Query 036775
Match_columns 293
No_of_seqs 408 out of 1288
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 08:35:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 5.7E-35 2E-39 245.1 23.3 185 6-193 26-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 6.6E-34 2.2E-38 238.7 20.7 200 23-225 7-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 3.2E-29 1.1E-33 216.8 27.0 274 4-286 303-588 (597)
4 2xpi_A Anaphase-promoting comp 100.0 3.4E-28 1.2E-32 210.3 26.5 265 2-274 80-435 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.8E-23 6.3E-28 171.4 29.8 264 4-274 65-367 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.7E-23 5.7E-28 171.7 28.0 248 6-261 101-388 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 2.9E-22 1E-26 167.3 29.3 263 5-274 25-357 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.8E-22 6.3E-27 168.5 27.9 248 6-258 94-375 (450)
9 3hym_B Cell division cycle pro 99.9 1.1E-21 3.9E-26 156.9 25.1 272 4-284 20-306 (330)
10 4eqf_A PEX5-related protein; a 99.9 3.5E-21 1.2E-25 156.5 22.2 262 4-271 63-352 (365)
11 1fch_A Peroxisomal targeting s 99.9 5.1E-21 1.7E-25 155.6 22.8 261 5-271 63-355 (368)
12 3ieg_A DNAJ homolog subfamily 99.9 1.5E-19 5.1E-24 146.0 29.9 269 5-282 36-340 (359)
13 3cv0_A Peroxisome targeting si 99.9 1.1E-20 3.9E-25 150.8 23.1 261 5-272 20-312 (327)
14 3ieg_A DNAJ homolog subfamily 99.9 7.4E-19 2.5E-23 142.0 31.1 269 5-282 2-306 (359)
15 2gw1_A Mitochondrial precursor 99.9 1E-19 3.4E-24 154.3 26.7 180 91-274 202-400 (514)
16 2gw1_A Mitochondrial precursor 99.9 3.9E-19 1.3E-23 150.7 25.4 263 5-275 5-367 (514)
17 3hym_B Cell division cycle pro 99.9 1.2E-18 4E-23 139.3 26.8 254 5-263 55-322 (330)
18 1fch_A Peroxisomal targeting s 99.9 9.8E-20 3.4E-24 148.0 19.8 258 15-275 34-314 (368)
19 3mkr_A Coatomer subunit epsilo 99.8 6E-19 2E-23 138.7 21.8 245 13-274 6-263 (291)
20 3spa_A Mtrpol, DNA-directed RN 99.8 3.8E-21 1.3E-25 167.5 9.2 130 76-206 125-262 (1134)
21 3fp2_A TPR repeat-containing p 99.8 4.4E-18 1.5E-22 145.1 27.7 262 7-276 26-408 (537)
22 4eqf_A PEX5-related protein; a 99.8 3E-19 1E-23 145.1 18.9 233 41-275 64-310 (365)
23 3spa_A Mtrpol, DNA-directed RN 99.8 3.4E-21 1.2E-25 167.7 7.0 146 110-260 128-286 (1134)
24 3mkr_A Coatomer subunit epsilo 99.8 5.1E-18 1.7E-22 133.4 22.3 232 7-250 35-273 (291)
25 3fp2_A TPR repeat-containing p 99.8 2.8E-17 9.6E-22 140.1 24.0 250 20-275 216-491 (537)
26 1b89_A Protein (clathrin heavy 99.8 4.4E-19 1.5E-23 143.5 11.6 234 5-269 31-266 (449)
27 3uq3_A Heat shock protein STI1 99.8 3.3E-17 1.1E-21 126.2 21.4 224 6-274 5-235 (258)
28 3cv0_A Peroxisome targeting si 99.8 2.5E-17 8.5E-22 131.4 20.1 230 41-275 20-269 (327)
29 3uq3_A Heat shock protein STI1 99.8 6.7E-17 2.3E-21 124.5 21.5 187 79-275 6-202 (258)
30 2pl2_A Hypothetical conserved 99.8 2E-17 7E-22 124.4 18.1 197 1-206 1-211 (217)
31 2pl2_A Hypothetical conserved 99.8 3.2E-17 1.1E-21 123.4 19.0 196 75-273 2-212 (217)
32 1xnf_A Lipoprotein NLPI; TPR, 99.8 6.9E-17 2.4E-21 125.7 19.3 243 17-269 16-269 (275)
33 3u4t_A TPR repeat-containing p 99.8 4.5E-16 1.5E-20 121.0 22.3 245 7-257 4-266 (272)
34 3u4t_A TPR repeat-containing p 99.7 1.4E-15 4.7E-20 118.2 23.9 233 43-282 4-255 (272)
35 2ho1_A Type 4 fimbrial biogene 99.7 5.4E-16 1.8E-20 119.2 20.4 205 42-250 37-247 (252)
36 2vq2_A PILW, putative fimbrial 99.7 5.3E-16 1.8E-20 116.9 19.9 194 79-274 9-210 (225)
37 3sf4_A G-protein-signaling mod 99.7 2.8E-16 9.4E-21 129.1 19.7 272 3-274 6-335 (406)
38 2vq2_A PILW, putative fimbrial 99.7 1E-15 3.5E-20 115.3 21.3 207 5-248 7-218 (225)
39 2ho1_A Type 4 fimbrial biogene 99.7 2E-15 6.8E-20 116.0 23.3 196 78-275 37-238 (252)
40 2h6f_A Protein farnesyltransfe 99.7 8.4E-16 2.9E-20 124.9 21.0 246 5-257 96-364 (382)
41 2q7f_A YRRB protein; TPR, prot 99.7 3.6E-16 1.2E-20 119.3 17.4 207 42-253 23-234 (243)
42 4a1s_A PINS, partner of inscut 99.7 6.8E-16 2.3E-20 127.2 19.9 268 7-274 49-371 (411)
43 1ouv_A Conserved hypothetical 99.7 1.9E-14 6.4E-19 112.0 26.9 226 4-245 4-255 (273)
44 3ro2_A PINS homolog, G-protein 99.7 6E-16 2.1E-20 123.6 18.7 271 5-275 4-332 (338)
45 1b89_A Protein (clathrin heavy 99.7 2E-17 6.9E-22 133.8 9.4 238 3-269 58-305 (449)
46 2h6f_A Protein farnesyltransfe 99.7 8.8E-16 3E-20 124.8 18.8 237 42-286 97-357 (382)
47 1ouv_A Conserved hypothetical 99.7 2E-14 6.9E-19 111.9 25.5 223 41-276 5-252 (273)
48 2q7f_A YRRB protein; TPR, prot 99.7 5.6E-16 1.9E-20 118.3 15.9 202 3-211 20-225 (243)
49 3nf1_A KLC 1, kinesin light ch 99.7 4.5E-15 1.5E-19 117.4 18.3 246 5-274 26-306 (311)
50 1xnf_A Lipoprotein NLPI; TPR, 99.7 6.4E-15 2.2E-19 114.5 16.7 219 52-275 15-244 (275)
51 4g1t_A Interferon-induced prot 99.6 1.3E-13 4.5E-18 115.6 25.2 270 5-277 50-365 (472)
52 2ond_A Cleavage stimulation fa 99.6 4.2E-13 1.4E-17 106.3 26.7 235 5-246 7-275 (308)
53 2xm6_A Protein corresponding t 99.6 1.9E-12 6.4E-17 109.3 32.1 254 5-275 38-325 (490)
54 3vtx_A MAMA; tetratricopeptide 99.6 1.4E-14 4.7E-19 105.9 16.3 171 109-284 5-177 (184)
55 4abn_A Tetratricopeptide repea 99.6 5E-15 1.7E-19 124.4 14.3 208 58-271 84-317 (474)
56 2xm6_A Protein corresponding t 99.6 5.1E-12 1.7E-16 106.7 31.1 257 6-276 75-397 (490)
57 3ulq_A Response regulator aspa 99.6 2.5E-13 8.6E-18 111.0 21.4 226 48-274 109-367 (383)
58 2ond_A Cleavage stimulation fa 99.6 1.2E-12 4.1E-17 103.7 23.4 211 59-275 33-270 (308)
59 2ooe_A Cleavage stimulation fa 99.6 6.5E-12 2.2E-16 107.1 29.1 152 122-276 292-455 (530)
60 3vtx_A MAMA; tetratricopeptide 99.6 5E-13 1.7E-17 97.5 19.3 163 5-172 4-169 (184)
61 4g1t_A Interferon-induced prot 99.6 2.7E-13 9.4E-18 113.7 19.8 263 7-277 137-461 (472)
62 3ulq_A Response regulator aspa 99.6 2.5E-12 8.5E-17 105.0 23.1 230 12-241 109-368 (383)
63 1hz4_A MALT regulatory protein 99.5 2.6E-11 8.8E-16 98.6 28.8 263 11-274 19-321 (373)
64 4abn_A Tetratricopeptide repea 99.5 2.1E-13 7.1E-18 114.5 16.0 208 22-236 84-316 (474)
65 4a1s_A PINS, partner of inscut 99.5 1.9E-13 6.5E-18 112.6 15.4 231 42-274 48-331 (411)
66 2ooe_A Cleavage stimulation fa 99.5 1.4E-11 4.9E-16 104.9 27.2 209 60-274 256-491 (530)
67 3sf4_A G-protein-signaling mod 99.5 9.1E-13 3.1E-17 108.1 18.9 235 38-274 5-295 (406)
68 3as5_A MAMA; tetratricopeptide 99.5 6.6E-13 2.3E-17 96.6 16.1 161 112-275 11-173 (186)
69 3ro2_A PINS homolog, G-protein 99.5 5.5E-13 1.9E-17 106.3 16.9 230 43-274 6-291 (338)
70 4i17_A Hypothetical protein; T 99.5 7E-12 2.4E-16 94.7 20.4 203 40-254 5-222 (228)
71 3q15_A PSP28, response regulat 99.5 1.6E-11 5.5E-16 100.1 23.8 192 81-273 144-363 (378)
72 3as5_A MAMA; tetratricopeptide 99.5 2.4E-12 8.1E-17 93.6 16.9 162 6-172 8-172 (186)
73 4gyw_A UDP-N-acetylglucosamine 99.5 6.6E-13 2.2E-17 116.2 15.5 162 77-241 8-174 (723)
74 1xi4_A Clathrin heavy chain; a 99.5 2.5E-11 8.5E-16 110.0 24.8 233 6-269 1105-1339(1630)
75 3edt_B KLC 2, kinesin light ch 99.5 5.7E-12 2E-16 97.9 18.2 234 17-274 12-280 (283)
76 3q15_A PSP28, response regulat 99.5 8.7E-12 3E-16 101.7 19.8 228 13-241 108-365 (378)
77 4gyw_A UDP-N-acetylglucosamine 99.5 5.5E-12 1.9E-16 110.4 18.8 163 5-172 8-173 (723)
78 4i17_A Hypothetical protein; T 99.4 7.4E-12 2.5E-16 94.6 16.2 194 76-281 5-213 (228)
79 1xi4_A Clathrin heavy chain; a 99.4 5.1E-11 1.7E-15 108.0 23.2 237 4-268 1132-1377(1630)
80 1qqe_A Vesicular transport pro 99.4 1.3E-10 4.3E-15 91.3 21.3 155 52-206 47-225 (292)
81 1hz4_A MALT regulatory protein 99.4 1.6E-10 5.6E-15 93.8 21.5 234 8-242 55-323 (373)
82 3mv2_B Coatomer subunit epsilo 99.4 4.6E-10 1.6E-14 87.3 22.0 173 97-274 85-281 (310)
83 3nf1_A KLC 1, kinesin light ch 99.4 5.2E-12 1.8E-16 99.7 11.1 199 5-205 68-303 (311)
84 3e4b_A ALGK; tetratricopeptide 99.3 4.9E-10 1.7E-14 93.5 22.8 185 80-276 178-388 (452)
85 3edt_B KLC 2, kinesin light ch 99.3 4E-11 1.4E-15 93.1 14.9 133 5-137 42-197 (283)
86 1qqe_A Vesicular transport pro 99.3 1.5E-10 5E-15 90.9 16.9 186 87-272 46-266 (292)
87 3qky_A Outer membrane assembly 99.3 2.1E-10 7.2E-15 88.4 17.0 103 4-106 13-125 (261)
88 2pzi_A Probable serine/threoni 99.3 8.2E-11 2.8E-15 103.1 16.3 181 17-206 402-602 (681)
89 3e4b_A ALGK; tetratricopeptide 99.3 1.2E-09 4E-14 91.2 22.5 257 6-274 141-420 (452)
90 2fo7_A Synthetic consensus TPR 99.3 1.9E-10 6.3E-15 78.7 14.7 127 147-275 4-132 (136)
91 3qky_A Outer membrane assembly 99.3 1.8E-10 6.1E-15 88.8 15.8 64 184-247 152-230 (261)
92 2fo7_A Synthetic consensus TPR 99.3 2.7E-10 9.3E-15 77.9 14.7 127 7-137 2-131 (136)
93 2pzi_A Probable serine/threoni 99.3 7.9E-11 2.7E-15 103.2 13.5 169 89-261 402-583 (681)
94 4e6h_A MRNA 3'-END-processing 99.2 5.4E-09 1.9E-13 90.7 24.6 233 7-246 303-575 (679)
95 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.4E-09 4.7E-14 81.9 17.9 182 78-276 4-214 (225)
96 3mv2_B Coatomer subunit epsilo 99.2 3.8E-09 1.3E-13 82.2 20.1 180 61-249 85-290 (310)
97 2ifu_A Gamma-SNAP; membrane fu 99.2 8.9E-10 3E-14 87.1 16.8 221 18-268 3-254 (307)
98 3urz_A Uncharacterized protein 99.2 1.6E-09 5.4E-14 80.6 16.4 186 7-219 5-197 (208)
99 3rjv_A Putative SEL1 repeat pr 99.2 4.1E-09 1.4E-13 78.5 18.1 159 109-276 18-198 (212)
100 3urz_A Uncharacterized protein 99.2 1.6E-09 5.5E-14 80.5 15.2 127 115-244 60-189 (208)
101 4ga2_A E3 SUMO-protein ligase 99.2 1.5E-10 5E-15 81.4 8.9 141 118-261 6-149 (150)
102 3qou_A Protein YBBN; thioredox 99.2 1.4E-09 4.7E-14 85.2 15.2 175 95-273 103-282 (287)
103 3dra_A Protein farnesyltransfe 99.2 3.5E-08 1.2E-12 77.3 22.6 148 123-273 124-285 (306)
104 2vsy_A XCC0866; transferase, g 99.2 9.6E-10 3.3E-14 94.5 15.1 160 91-253 2-169 (568)
105 3qou_A Protein YBBN; thioredox 99.1 2.6E-09 8.8E-14 83.6 16.2 163 74-240 113-283 (287)
106 3dra_A Protein farnesyltransfe 99.1 9.1E-08 3.1E-12 74.9 24.5 231 17-255 43-302 (306)
107 4ga2_A E3 SUMO-protein ligase 99.1 5.7E-10 1.9E-14 78.4 11.0 139 51-194 6-148 (150)
108 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.1E-08 3.8E-13 76.9 18.3 184 5-206 3-210 (225)
109 2r5s_A Uncharacterized protein 99.1 1.7E-09 5.9E-14 78.1 13.2 154 81-238 9-170 (176)
110 2vsy_A XCC0866; transferase, g 99.1 1.5E-09 5.3E-14 93.2 14.8 147 55-206 2-154 (568)
111 1hh8_A P67PHOX, NCF-2, neutrop 99.1 1E-08 3.5E-13 76.2 17.1 130 4-140 4-152 (213)
112 2r5s_A Uncharacterized protein 99.1 1.3E-09 4.5E-14 78.7 11.5 159 8-171 8-171 (176)
113 3rjv_A Putative SEL1 repeat pr 99.1 2.4E-08 8.2E-13 74.4 18.2 174 61-243 5-199 (212)
114 1hh8_A P67PHOX, NCF-2, neutrop 99.1 6.6E-09 2.3E-13 77.2 15.0 130 81-211 9-153 (213)
115 2ifu_A Gamma-SNAP; membrane fu 99.0 3.1E-08 1.1E-12 78.2 18.5 163 8-171 38-222 (307)
116 2qfc_A PLCR protein; TPR, HTH, 99.0 4.5E-08 1.5E-12 76.7 18.9 159 114-272 80-263 (293)
117 3u3w_A Transcriptional activat 99.0 2.4E-07 8.4E-12 72.5 22.0 160 115-274 81-265 (293)
118 3u3w_A Transcriptional activat 99.0 3.7E-08 1.3E-12 77.2 17.0 160 47-206 80-263 (293)
119 2qfc_A PLCR protein; TPR, HTH, 99.0 8E-08 2.7E-12 75.3 18.4 165 42-206 75-263 (293)
120 2c2l_A CHIP, carboxy terminus 98.9 2.5E-09 8.7E-14 83.4 8.6 188 77-274 3-198 (281)
121 2c2l_A CHIP, carboxy terminus 98.9 3E-08 1E-12 77.3 14.1 190 4-206 2-196 (281)
122 1na0_A Designed protein CTPR3; 98.9 4.3E-08 1.5E-12 65.7 12.9 98 5-106 8-105 (125)
123 1a17_A Serine/threonine protei 98.9 3.3E-08 1.1E-12 70.1 12.9 128 145-274 14-145 (166)
124 3gw4_A Uncharacterized protein 98.9 4.3E-08 1.5E-12 72.1 13.7 127 80-206 28-173 (203)
125 4e6h_A MRNA 3'-END-processing 98.9 1E-07 3.6E-12 82.8 17.4 214 60-276 327-571 (679)
126 3q7a_A Farnesyltransferase alp 98.9 3.5E-06 1.2E-10 66.8 24.2 174 15-195 63-257 (349)
127 1a17_A Serine/threonine protei 98.9 7.6E-08 2.6E-12 68.2 13.6 125 7-135 14-143 (166)
128 2lni_A Stress-induced-phosphop 98.9 7.8E-08 2.7E-12 65.4 13.1 114 4-121 14-130 (133)
129 3gyz_A Chaperone protein IPGC; 98.9 1.9E-08 6.5E-13 70.5 9.7 96 180-275 36-133 (151)
130 1na0_A Designed protein CTPR3; 98.9 5.9E-08 2E-12 65.0 11.7 109 146-256 11-121 (125)
131 3q7a_A Farnesyltransferase alp 98.9 6.6E-07 2.3E-11 71.0 19.2 227 53-285 65-340 (349)
132 4gco_A Protein STI-1; structur 98.8 5.1E-08 1.7E-12 66.1 11.1 105 146-252 15-121 (126)
133 4gco_A Protein STI-1; structur 98.8 8.5E-08 2.9E-12 65.0 12.1 94 181-274 14-109 (126)
134 4b4t_Q 26S proteasome regulato 98.8 8.7E-07 3E-11 73.2 20.3 190 85-274 11-244 (434)
135 2lni_A Stress-induced-phosphop 98.8 7.4E-08 2.5E-12 65.5 11.6 59 112-171 19-77 (133)
136 3gw4_A Uncharacterized protein 98.8 4.8E-08 1.6E-12 71.8 11.2 152 89-240 3-175 (203)
137 2vgx_A Chaperone SYCD; alterna 98.8 2E-08 6.7E-13 70.3 8.5 99 145-245 22-122 (148)
138 3gyz_A Chaperone protein IPGC; 98.8 8.1E-08 2.8E-12 67.2 11.6 119 9-139 12-134 (151)
139 4f3v_A ESX-1 secretion system 98.8 1.1E-07 3.6E-12 73.1 13.0 121 151-274 109-236 (282)
140 2vyi_A SGTA protein; chaperone 98.8 6.5E-08 2.2E-12 65.4 10.8 115 145-261 13-129 (131)
141 2vgx_A Chaperone SYCD; alterna 98.8 6.5E-08 2.2E-12 67.6 10.9 94 78-172 21-117 (148)
142 2e2e_A Formate-dependent nitri 98.8 3.9E-08 1.3E-12 70.8 10.1 122 121-245 22-148 (177)
143 2vyi_A SGTA protein; chaperone 98.8 1.2E-07 4.1E-12 64.1 12.0 97 5-105 11-107 (131)
144 4f3v_A ESX-1 secretion system 98.8 8.2E-08 2.8E-12 73.7 11.3 182 18-206 18-234 (282)
145 2fbn_A 70 kDa peptidylprolyl i 98.8 6.3E-09 2.1E-13 76.6 5.0 169 85-274 11-185 (198)
146 4b4t_Q 26S proteasome regulato 98.8 3.2E-07 1.1E-11 75.8 15.7 194 13-206 11-242 (434)
147 2e2e_A Formate-dependent nitri 98.8 2.2E-07 7.7E-12 66.8 12.8 117 53-172 21-143 (177)
148 2uy1_A Cleavage stimulation fa 98.8 9.2E-06 3.2E-10 68.3 24.3 86 185-271 291-379 (493)
149 1p5q_A FKBP52, FK506-binding p 98.8 1.2E-07 4E-12 75.9 12.2 92 181-272 197-291 (336)
150 1p5q_A FKBP52, FK506-binding p 98.7 1.6E-07 5.4E-12 75.1 12.5 127 42-171 147-292 (336)
151 2xcb_A PCRH, regulatory protei 98.7 1.8E-07 6.2E-12 64.7 10.1 99 146-246 20-120 (142)
152 3dss_A Geranylgeranyl transfer 98.7 9.2E-06 3.1E-10 64.1 20.7 92 58-152 90-187 (331)
153 3upv_A Heat shock protein STI1 98.7 2.7E-07 9.2E-12 62.3 10.7 96 145-242 5-102 (126)
154 2kck_A TPR repeat; tetratricop 98.7 1.8E-07 6.3E-12 61.3 9.6 95 181-275 7-106 (112)
155 2fbn_A 70 kDa peptidylprolyl i 98.7 4.4E-08 1.5E-12 72.0 6.9 119 79-200 39-176 (198)
156 2xcb_A PCRH, regulatory protei 98.7 4.7E-07 1.6E-11 62.6 11.7 94 43-138 19-115 (142)
157 3sz7_A HSC70 cochaperone (SGT) 98.7 6.3E-07 2.2E-11 63.6 12.4 94 78-172 11-107 (164)
158 1elw_A TPR1-domain of HOP; HOP 98.6 8.3E-07 2.8E-11 58.6 12.2 90 113-205 8-97 (118)
159 3q49_B STIP1 homology and U bo 98.6 8.8E-07 3E-11 60.6 12.6 98 4-105 7-104 (137)
160 1elw_A TPR1-domain of HOP; HOP 98.6 1.4E-06 4.9E-11 57.4 13.1 98 5-106 3-100 (118)
161 3q49_B STIP1 homology and U bo 98.6 6.1E-07 2.1E-11 61.3 11.4 98 143-242 8-107 (137)
162 2kck_A TPR repeat; tetratricop 98.6 4.8E-07 1.6E-11 59.2 10.4 98 5-106 5-105 (112)
163 4gcn_A Protein STI-1; structur 98.6 7.4E-07 2.5E-11 60.4 11.3 57 80-136 10-69 (127)
164 3ro3_A PINS homolog, G-protein 98.6 1E-06 3.6E-11 61.7 12.3 99 6-104 9-115 (164)
165 3upv_A Heat shock protein STI1 98.6 1.2E-06 4E-11 59.1 12.0 96 6-105 4-99 (126)
166 3dss_A Geranylgeranyl transfer 98.6 1.4E-05 4.9E-10 63.0 19.7 222 54-282 41-309 (331)
167 3sz7_A HSC70 cochaperone (SGT) 98.6 1E-06 3.5E-11 62.5 12.2 98 5-106 10-107 (164)
168 2dba_A Smooth muscle cell asso 98.6 9.3E-07 3.2E-11 61.2 11.4 110 143-255 27-142 (148)
169 2dba_A Smooth muscle cell asso 98.6 1.5E-06 5.1E-11 60.1 12.4 96 5-105 27-126 (148)
170 1hxi_A PEX5, peroxisome target 98.6 5.5E-07 1.9E-11 60.4 9.2 93 9-105 20-112 (121)
171 1hxi_A PEX5, peroxisome target 98.5 5.2E-07 1.8E-11 60.5 8.2 93 182-274 19-113 (121)
172 3ro3_A PINS homolog, G-protein 98.5 1.7E-06 5.7E-11 60.7 11.0 129 146-274 11-157 (164)
173 4gcn_A Protein STI-1; structur 98.5 2.9E-06 9.8E-11 57.4 11.6 91 45-137 11-111 (127)
174 1elr_A TPR2A-domain of HOP; HO 98.5 1.9E-06 6.4E-11 58.1 10.6 25 9-33 7-31 (131)
175 1elr_A TPR2A-domain of HOP; HO 98.5 7.5E-07 2.6E-11 60.1 8.6 94 112-206 7-105 (131)
176 2xev_A YBGF; tetratricopeptide 98.5 1.2E-06 4.1E-11 59.2 9.0 100 149-250 7-114 (129)
177 1wao_1 Serine/threonine protei 98.4 5.8E-07 2E-11 75.4 7.8 86 118-206 15-100 (477)
178 1wao_1 Serine/threonine protei 98.4 2.3E-06 7.8E-11 71.8 11.3 121 9-133 9-134 (477)
179 2xev_A YBGF; tetratricopeptide 98.4 4.5E-06 1.5E-10 56.2 10.9 99 111-212 4-109 (129)
180 3n71_A Histone lysine methyltr 98.4 3.1E-06 1E-10 70.9 11.8 123 153-275 318-464 (490)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 3.6E-06 1.2E-10 70.3 11.7 86 181-266 318-405 (457)
182 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 5.6E-06 1.9E-10 69.1 12.7 93 78-171 317-413 (457)
183 1ihg_A Cyclophilin 40; ppiase 98.4 7.8E-06 2.7E-10 66.2 13.0 119 80-201 225-362 (370)
184 3k9i_A BH0479 protein; putativ 98.3 1.4E-06 4.9E-11 57.9 7.1 83 122-206 3-87 (117)
185 2hr2_A Hypothetical protein; a 98.3 4.1E-06 1.4E-10 58.3 9.4 61 214-274 59-130 (159)
186 3n71_A Histone lysine methyltr 98.3 5.9E-06 2E-10 69.2 12.1 121 52-172 319-463 (490)
187 2if4_A ATFKBP42; FKBP-like, al 98.3 3.4E-06 1.2E-10 67.5 9.6 144 7-172 180-327 (338)
188 2uy1_A Cleavage stimulation fa 98.3 0.00025 8.4E-09 59.7 21.3 203 23-240 196-412 (493)
189 3k9i_A BH0479 protein; putativ 98.3 1.2E-06 3.9E-11 58.4 5.8 92 156-248 2-97 (117)
190 3rkv_A Putative peptidylprolyl 98.3 6E-06 2.1E-10 58.3 9.7 104 143-246 10-131 (162)
191 1ihg_A Cyclophilin 40; ppiase 98.3 7.2E-06 2.5E-10 66.3 10.9 122 147-268 226-363 (370)
192 2hr2_A Hypothetical protein; a 98.3 1.4E-05 4.8E-10 55.7 10.5 90 82-171 15-129 (159)
193 2if4_A ATFKBP42; FKBP-like, al 98.2 3.3E-06 1.1E-10 67.5 7.7 93 182-274 232-327 (338)
194 3rkv_A Putative peptidylprolyl 98.2 5.3E-05 1.8E-09 53.3 12.8 108 6-138 11-126 (162)
195 1dce_A Protein (RAB geranylger 98.2 0.00017 5.9E-09 61.7 17.2 168 94-264 45-244 (567)
196 2l6j_A TPR repeat-containing p 98.1 3.1E-06 1.1E-10 55.3 4.8 95 4-102 2-102 (111)
197 2l6j_A TPR repeat-containing p 98.1 7E-06 2.4E-10 53.6 6.1 59 112-171 7-65 (111)
198 1na3_A Designed protein CTPR2; 98.1 6E-05 2.1E-09 47.0 9.9 82 5-90 8-89 (91)
199 1dce_A Protein (RAB geranylger 98.0 0.00022 7.5E-09 61.0 15.6 174 18-198 40-244 (567)
200 1klx_A Cysteine rich protein B 98.0 0.00033 1.1E-08 47.9 12.9 110 20-139 9-127 (138)
201 2kat_A Uncharacterized protein 97.9 3.8E-05 1.3E-09 50.6 7.2 74 61-136 4-80 (115)
202 1na3_A Designed protein CTPR2; 97.9 5.7E-05 2E-09 47.1 7.8 76 182-257 11-88 (91)
203 3ma5_A Tetratricopeptide repea 97.9 8.5E-05 2.9E-09 47.6 8.1 61 180-240 7-69 (100)
204 2kat_A Uncharacterized protein 97.9 6E-05 2.1E-09 49.6 7.3 81 161-243 2-84 (115)
205 3ma5_A Tetratricopeptide repea 97.8 7.6E-05 2.6E-09 47.8 7.5 60 77-136 6-68 (100)
206 1klx_A Cysteine rich protein B 97.8 0.00028 9.5E-09 48.2 10.2 109 124-241 10-126 (138)
207 3ly7_A Transcriptional activat 97.7 0.0015 5.1E-08 52.0 14.6 72 108-184 276-347 (372)
208 1zu2_A Mitochondrial import re 97.7 2.5E-05 8.5E-10 54.3 3.5 88 155-244 13-123 (158)
209 1wy6_A Hypothetical protein ST 97.7 0.0031 1.1E-07 41.9 12.7 84 193-278 74-157 (172)
210 3qww_A SET and MYND domain-con 97.6 0.00017 5.9E-09 59.4 7.9 82 193-274 311-410 (433)
211 1zu2_A Mitochondrial import re 97.5 0.00054 1.8E-08 47.6 8.1 85 17-105 13-118 (158)
212 3qwp_A SET and MYND domain-con 97.5 0.0006 2E-08 56.2 9.8 88 187-274 294-399 (429)
213 3qww_A SET and MYND domain-con 97.4 0.00038 1.3E-08 57.3 7.6 61 111-171 342-409 (433)
214 3mkq_A Coatomer beta'-subunit; 97.4 0.002 6.7E-08 57.7 11.9 98 89-207 610-708 (814)
215 3bee_A Putative YFRE protein; 97.3 0.002 6.7E-08 40.5 8.5 67 210-276 4-73 (93)
216 3qwp_A SET and MYND domain-con 97.3 0.0009 3.1E-08 55.1 8.6 88 85-172 294-399 (429)
217 3mkq_A Coatomer beta'-subunit; 97.3 0.0047 1.6E-07 55.2 13.7 156 14-207 607-763 (814)
218 2kc7_A BFR218_protein; tetratr 97.3 0.0004 1.4E-08 44.0 5.0 62 188-249 8-72 (99)
219 3ly7_A Transcriptional activat 97.1 0.0074 2.5E-07 48.1 11.7 66 178-243 275-341 (372)
220 2kc7_A BFR218_protein; tetratr 97.1 0.0013 4.5E-08 41.5 6.2 63 218-282 6-69 (99)
221 3mkq_B Coatomer subunit alpha; 97.0 0.053 1.8E-06 38.3 14.1 129 86-238 13-141 (177)
222 2v5f_A Prolyl 4-hydroxylase su 96.9 0.011 3.9E-07 37.8 9.1 71 180-250 5-84 (104)
223 3mkq_B Coatomer subunit alpha; 96.8 0.075 2.6E-06 37.5 12.9 130 116-272 12-141 (177)
224 1pc2_A Mitochondria fission pr 96.5 0.031 1.1E-06 38.4 9.3 84 125-211 14-103 (152)
225 4b4t_P 26S proteasome regulato 96.3 0.4 1.4E-05 39.7 18.3 252 19-270 29-319 (445)
226 3lvg_A Clathrin heavy chain 1; 96.2 6.5E-07 2.2E-11 72.8 -17.4 240 7-271 55-316 (624)
227 3bee_A Putative YFRE protein; 96.2 0.096 3.3E-06 32.6 9.8 65 4-70 4-71 (93)
228 4ady_A RPN2, 26S proteasome re 96.2 0.5 1.7E-05 42.7 17.3 254 15-273 383-656 (963)
229 3u64_A Protein TP_0956; tetrat 96.2 0.032 1.1E-06 42.8 8.6 66 213-278 200-272 (301)
230 1pc2_A Mitochondria fission pr 96.1 0.052 1.8E-06 37.2 8.7 89 159-249 13-108 (152)
231 1qsa_A Protein (soluble lytic 96.0 0.7 2.4E-05 39.9 19.4 56 218-273 291-346 (618)
232 2v5f_A Prolyl 4-hydroxylase su 95.9 0.11 3.9E-06 33.0 9.3 66 5-70 4-74 (104)
233 1v54_E Cytochrome C oxidase po 95.8 0.079 2.7E-06 33.2 7.4 63 124-188 25-87 (109)
234 4h7y_A Dual specificity protei 95.8 0.27 9.2E-06 33.5 11.0 52 92-143 74-128 (161)
235 3u64_A Protein TP_0956; tetrat 95.8 0.13 4.6E-06 39.4 10.4 90 94-184 179-281 (301)
236 3ffl_A Anaphase-promoting comp 95.7 0.1 3.5E-06 36.2 8.8 69 2-70 16-91 (167)
237 4h7y_A Dual specificity protei 95.6 0.2 6.7E-06 34.2 9.6 110 143-254 12-136 (161)
238 1wy6_A Hypothetical protein ST 95.4 0.34 1.2E-05 32.4 13.7 140 16-176 17-156 (172)
239 3lvg_A Clathrin heavy chain 1; 95.2 0.0039 1.3E-07 51.3 0.5 211 3-232 80-324 (624)
240 1v54_E Cytochrome C oxidase po 95.2 0.25 8.4E-06 31.0 8.3 62 21-85 25-86 (109)
241 4b4t_P 26S proteasome regulato 95.1 1.1 3.9E-05 36.9 15.6 92 183-274 140-246 (445)
242 2ff4_A Probable regulatory pro 95.1 0.088 3E-06 42.7 8.1 68 216-283 175-247 (388)
243 1nzn_A CGI-135 protein, fissio 95.0 0.39 1.3E-05 31.7 9.5 84 124-210 16-105 (126)
244 4gns_B Protein CSD3, chitin bi 95.0 0.2 7E-06 44.1 10.4 51 222-272 347-397 (754)
245 3lpz_A GET4 (YOR164C homolog); 94.7 1.2 4.1E-05 35.0 22.5 169 80-274 37-215 (336)
246 2y69_E Cytochrome C oxidase su 94.7 0.22 7.4E-06 33.1 7.4 63 124-188 68-130 (152)
247 2wpv_A GET4, UPF0363 protein Y 94.7 1.2 4.1E-05 34.7 20.9 169 80-274 35-216 (312)
248 4fhn_B Nucleoporin NUP120; pro 94.2 1.3 4.3E-05 41.6 14.2 182 47-240 817-1049(1139)
249 4gns_B Protein CSD3, chitin bi 94.1 0.62 2.1E-05 41.1 11.4 123 10-135 252-397 (754)
250 2ff4_A Probable regulatory pro 94.1 0.32 1.1E-05 39.4 9.1 57 47-105 176-232 (388)
251 2y69_E Cytochrome C oxidase su 93.8 0.68 2.3E-05 30.8 8.3 57 60-117 71-130 (152)
252 1nzn_A CGI-135 protein, fissio 93.6 0.97 3.3E-05 29.8 9.3 90 159-250 16-112 (126)
253 3ffl_A Anaphase-promoting comp 93.3 1.1 3.7E-05 31.1 9.3 113 81-207 23-149 (167)
254 4b4t_R RPN7, 26S proteasome re 92.6 2.1 7.2E-05 35.2 11.8 94 79-172 132-236 (429)
255 4fhn_B Nucleoporin NUP120; pro 92.1 1.8 6.1E-05 40.6 11.9 122 149-276 817-968 (1139)
256 3o48_A Mitochondria fission 1 91.4 2.1 7.3E-05 28.4 9.3 73 139-212 35-111 (134)
257 1zbp_A Hypothetical protein VP 89.5 1.3 4.5E-05 33.5 6.9 52 153-206 6-57 (273)
258 4ady_A RPN2, 26S proteasome re 88.3 15 0.00051 33.5 20.6 222 14-240 419-657 (963)
259 1y8m_A FIS1; mitochondria, unk 87.9 4.6 0.00016 27.2 9.8 69 141-210 36-108 (144)
260 2p58_C Putative type III secre 87.7 3.6 0.00012 25.8 7.6 86 56-147 21-106 (116)
261 3o48_A Mitochondria fission 1 87.4 4.1 0.00014 27.1 7.5 51 56-107 57-107 (134)
262 3esl_A Checkpoint serine/threo 86.0 7.8 0.00027 27.9 10.9 57 58-115 95-152 (202)
263 1y8m_A FIS1; mitochondria, unk 86.0 6.1 0.00021 26.6 10.4 72 177-248 36-113 (144)
264 4b4t_R RPN7, 26S proteasome re 85.8 7.8 0.00027 31.8 10.2 62 44-105 133-195 (429)
265 3lpz_A GET4 (YOR164C homolog); 85.4 12 0.0004 29.5 17.7 129 8-157 37-180 (336)
266 1zbp_A Hypothetical protein VP 85.1 11 0.00036 28.6 11.3 118 117-246 5-134 (273)
267 2uwj_G Type III export protein 84.8 5.4 0.00018 25.0 7.9 86 57-148 21-106 (115)
268 2wpv_A GET4, UPF0363 protein Y 84.8 12 0.00042 29.1 14.3 62 72-133 86-158 (312)
269 1wdy_A 2-5A-dependent ribonucl 84.7 6.3 0.00022 29.5 8.8 248 10-282 6-282 (285)
270 3ltm_A Alpha-REP4; protein eng 83.0 11 0.00037 27.0 17.5 168 40-222 31-198 (211)
271 3kea_A K1L; tropism, ANK repea 83.0 9.9 0.00034 28.9 9.2 19 85-103 66-84 (285)
272 3txn_A 26S proteasome regulato 81.8 19 0.00065 29.1 24.6 163 8-172 21-209 (394)
273 3esl_A Checkpoint serine/threo 80.0 14 0.00049 26.5 9.8 47 196-242 95-145 (202)
274 3ltj_A Alpharep-4; protein eng 79.8 14 0.00047 26.2 18.5 110 77-195 58-167 (201)
275 2nsz_A Programmed cell death p 79.2 11 0.00038 24.8 8.0 62 82-143 11-77 (129)
276 4a1g_A Mitotic checkpoint seri 78.8 13 0.00045 25.4 11.0 50 95-144 82-136 (152)
277 2uwj_G Type III export protein 78.4 9.9 0.00034 23.8 8.7 54 188-244 47-100 (115)
278 2ion_A PDCD4, programmed cell 78.0 9.4 0.00032 26.1 6.6 62 82-143 13-79 (152)
279 3txn_A 26S proteasome regulato 76.9 28 0.00095 28.2 21.0 164 43-206 20-207 (394)
280 2d2s_A Exocyst complex compone 74.0 18 0.00061 26.8 7.7 84 187-272 25-117 (235)
281 2d2s_A Exocyst complex compone 71.9 28 0.00095 25.8 9.7 91 11-105 23-118 (235)
282 4aez_C MAD3, mitotic spindle c 71.7 27 0.00092 25.6 8.4 29 214-242 152-180 (223)
283 3ltj_A Alpharep-4; protein eng 71.0 24 0.00084 24.8 19.6 144 76-229 26-169 (201)
284 1oai_A Nuclear RNA export fact 70.8 4.6 0.00016 22.4 3.0 24 20-43 34-57 (59)
285 2nsz_A Programmed cell death p 70.7 20 0.00068 23.6 6.9 61 8-70 9-71 (129)
286 4aez_C MAD3, mitotic spindle c 70.2 29 0.001 25.4 9.6 49 95-143 131-184 (223)
287 2ion_A PDCD4, programmed cell 69.0 24 0.00084 24.0 7.1 26 8-33 11-36 (152)
288 2wvi_A Mitotic checkpoint seri 68.6 26 0.0009 24.2 8.4 33 247-279 97-129 (164)
289 2p58_C Putative type III secre 68.2 19 0.00067 22.6 9.4 74 124-206 22-95 (116)
290 3hra_A Ankyrin repeat family p 66.5 16 0.00054 25.6 6.1 21 85-105 9-29 (201)
291 2wvi_A Mitotic checkpoint seri 66.2 30 0.001 24.0 10.3 48 97-144 79-131 (164)
292 2fe3_A Peroxide operon regulat 66.0 21 0.00073 23.9 6.3 62 134-197 12-73 (145)
293 1qsa_A Protein (soluble lytic 65.6 67 0.0023 27.8 21.6 113 124-240 229-347 (618)
294 4b4t_S RPN3, 26S proteasome re 65.4 38 0.0013 28.5 8.6 64 7-70 232-298 (523)
295 4a1g_A Mitotic checkpoint seri 65.2 30 0.001 23.6 8.9 51 229-279 82-134 (152)
296 3eu9_A Huntingtin-interacting 64.8 36 0.0012 24.4 8.0 206 51-274 15-235 (240)
297 3ltm_A Alpha-REP4; protein eng 64.3 35 0.0012 24.2 19.3 145 75-229 30-174 (211)
298 4b4t_S RPN3, 26S proteasome re 62.1 71 0.0024 26.9 12.0 60 79-138 232-299 (523)
299 4gq2_M Nucleoporin NUP120; bet 61.9 79 0.0027 29.1 10.8 51 150-206 816-866 (950)
300 4ets_A Ferric uptake regulatio 60.7 24 0.00083 24.3 5.8 70 126-197 14-86 (162)
301 3ygs_P Procaspase 9; apoptosis 60.4 22 0.00074 22.0 5.0 37 93-129 52-88 (97)
302 2qx5_A Nucleoporin NIC96; mRNA 59.4 91 0.0031 27.3 15.5 91 187-281 450-570 (661)
303 1ug3_A EIF4GI, eukaryotic prot 58.6 41 0.0014 26.5 7.5 60 9-70 14-74 (339)
304 2o03_A Probable zinc uptake re 57.6 22 0.00076 23.3 5.0 42 117-158 18-59 (131)
305 2rg8_A Programmed cell death p 57.5 42 0.0014 23.2 6.5 26 9-34 13-38 (165)
306 2qq8_A TBC1 domain family memb 56.2 54 0.0019 25.7 7.8 36 136-171 220-255 (334)
307 2xig_A Ferric uptake regulatio 56.1 31 0.0011 23.3 5.7 62 133-196 16-77 (150)
308 1wdy_A 2-5A-dependent ribonucl 55.8 59 0.002 24.0 8.0 214 47-281 7-248 (285)
309 1bpo_A Protein (clathrin); cla 54.3 94 0.0032 25.8 10.2 43 139-183 356-398 (494)
310 3ljn_A Hypothetical protein; a 54.2 35 0.0012 26.8 6.6 216 39-270 15-265 (364)
311 3mwm_A ZUR, putative metal upt 53.2 19 0.00067 24.0 4.2 47 149-196 18-64 (139)
312 2zu6_B Programmed cell death p 52.9 78 0.0027 24.5 13.1 27 8-34 5-31 (307)
313 3eu9_A Huntingtin-interacting 52.9 50 0.0017 23.6 6.9 211 5-237 6-232 (240)
314 3ljn_A Hypothetical protein; a 52.3 48 0.0016 26.0 7.1 213 5-237 17-266 (364)
315 3bqo_A Telomeric repeat-bindin 52.2 53 0.0018 23.5 6.2 45 160-206 94-143 (211)
316 3hra_A Ankyrin repeat family p 52.0 56 0.0019 22.6 7.1 82 15-103 11-94 (201)
317 2zu6_B Programmed cell death p 51.5 51 0.0018 25.5 6.8 60 82-141 170-234 (307)
318 3jxi_A Vanilloid receptor-rela 51.5 30 0.001 25.4 5.6 56 13-69 9-73 (260)
319 3utm_A Tankyrase-1; tankyrase, 50.8 82 0.0028 24.1 11.0 113 12-132 27-144 (351)
320 2ijq_A Hypothetical protein; s 50.8 58 0.002 22.4 7.2 54 16-70 42-103 (161)
321 1wgl_A TOLL-interacting protei 49.7 32 0.0011 19.0 4.6 25 257-281 34-58 (59)
322 3eiq_C Programmed cell death p 49.5 97 0.0033 24.6 13.5 27 8-34 56-82 (358)
323 3no6_A Transcriptional activat 48.9 80 0.0027 23.5 7.8 27 2-28 125-152 (248)
324 1k1a_A B-cell lymphoma 3-encod 47.7 69 0.0024 22.9 7.0 12 19-30 19-30 (241)
325 3eyy_A Putative iron uptake re 47.2 36 0.0012 22.8 4.8 60 134-196 9-68 (145)
326 1mzb_A Ferric uptake regulatio 46.9 29 0.00098 23.0 4.2 62 134-197 8-70 (136)
327 1k1a_A B-cell lymphoma 3-encod 44.9 83 0.0028 22.5 9.5 16 221-236 156-171 (241)
328 2fe3_A Peroxide operon regulat 43.8 70 0.0024 21.3 7.4 18 189-206 30-47 (145)
329 3bu8_A Telomeric repeat-bindin 43.8 92 0.0031 22.7 8.1 23 84-106 120-142 (235)
330 2xig_A Ferric uptake regulatio 43.6 72 0.0025 21.5 8.0 55 174-229 21-78 (150)
331 3ygs_P Procaspase 9; apoptosis 42.8 57 0.002 20.1 6.6 36 124-163 52-87 (97)
332 2w57_A Ferric uptake regulatio 42.3 46 0.0016 22.4 4.8 62 134-197 7-69 (150)
333 3eyy_A Putative iron uptake re 41.0 77 0.0026 21.2 5.7 54 174-229 13-69 (145)
334 4fn6_A Thiaminase-2, thiaminas 40.8 1E+02 0.0035 22.5 8.6 26 2-27 106-132 (229)
335 2dod_A Transcription elongatio 40.7 38 0.0013 20.2 3.6 31 160-191 16-46 (82)
336 1mzb_A Ferric uptake regulatio 40.6 76 0.0026 20.9 6.6 55 174-229 12-70 (136)
337 3aji_A 26S proteasome non-ATPa 39.9 98 0.0034 21.9 8.7 18 50-67 11-28 (231)
338 2b7e_A PRE-mRNA processing pro 39.7 20 0.00067 19.9 2.0 29 126-154 3-31 (59)
339 4fjo_A DNA repair protein REV1 39.7 55 0.0019 20.2 4.4 30 5-34 32-61 (97)
340 2w57_A Ferric uptake regulatio 39.1 86 0.003 21.1 6.6 34 125-158 33-66 (150)
341 2f6m_A Suppressor protein STP2 38.5 44 0.0015 18.9 3.3 45 111-156 4-48 (65)
342 2cwy_A Hypothetical protein TT 38.2 69 0.0024 19.6 5.3 52 16-70 11-67 (94)
343 1oxz_A ADP-ribosylation factor 37.8 1.1E+02 0.0036 21.7 8.3 23 12-34 37-62 (186)
344 3ibx_A TENA, HP1287, putative 37.7 1.1E+02 0.0039 22.0 7.1 26 2-27 109-134 (221)
345 2p1h_A APAF-1, apoptotic prote 37.1 64 0.0022 19.5 4.5 34 92-125 50-83 (94)
346 3bqo_A Telomeric repeat-bindin 36.9 67 0.0023 23.0 4.8 19 50-68 125-143 (211)
347 2crb_A Nuclear receptor bindin 36.8 47 0.0016 20.3 3.5 26 247-272 16-41 (97)
348 2qx5_A Nucleoporin NIC96; mRNA 36.7 2.2E+02 0.0074 25.0 16.3 22 190-211 548-569 (661)
349 2yru_A Steroid receptor RNA ac 36.3 86 0.003 20.2 6.5 33 38-70 57-89 (118)
350 1uzc_A Hypothetical protein FL 36.2 46 0.0016 19.2 3.3 32 159-191 13-44 (71)
351 1ug3_A EIF4GI, eukaryotic prot 35.6 1.6E+02 0.0054 23.1 10.0 73 46-120 15-88 (339)
352 3aji_A 26S proteasome non-ATPa 34.6 1.2E+02 0.0041 21.4 7.4 85 12-103 9-95 (231)
353 2etb_A Transient receptor pote 34.3 1.2E+02 0.004 22.1 6.4 90 12-104 5-113 (256)
354 3m0z_A Putative aldolase; MCSG 34.2 1E+02 0.0034 22.7 5.4 79 196-274 147-246 (249)
355 2etb_A Transient receptor pote 34.2 61 0.0021 23.7 4.8 55 49-105 6-70 (256)
356 2o03_A Probable zinc uptake re 34.0 57 0.002 21.3 4.1 24 12-35 16-39 (131)
357 2rg8_A Programmed cell death p 33.5 85 0.0029 21.6 5.0 26 82-107 14-39 (165)
358 3b7b_A Euchromatic histone-lys 33.3 83 0.0028 22.5 5.4 22 253-274 214-235 (237)
359 3mv2_A Coatomer subunit alpha; 33.3 1.7E+02 0.0059 22.8 11.5 31 111-141 209-239 (325)
360 3f3f_C Nucleoporin NUP85; stru 33.2 54 0.0018 27.9 4.5 86 8-98 481-569 (570)
361 4ets_A Ferric uptake regulatio 33.0 1.2E+02 0.004 20.8 7.3 71 22-94 13-85 (162)
362 1bd8_A P19INK4D CDK4/6 inhibit 33.0 93 0.0032 20.3 5.3 19 13-31 6-24 (156)
363 3r88_A Anthranilate phosphorib 32.6 1.5E+02 0.0053 23.7 7.0 67 212-278 23-91 (377)
364 2fu4_A Ferric uptake regulatio 32.5 75 0.0026 18.4 7.0 61 134-196 7-68 (83)
365 1jog_A Hypothetical protein HI 31.3 1.2E+02 0.0041 20.4 5.6 79 58-137 54-141 (146)
366 3l6a_A Eukaryotic translation 31.2 2E+02 0.0068 22.9 11.2 26 8-33 14-39 (364)
367 3mwm_A ZUR, putative metal upt 31.1 1E+02 0.0035 20.4 5.0 44 115-158 19-62 (139)
368 4gq2_M Nucleoporin NUP120; bet 30.7 3.2E+02 0.011 25.1 12.1 128 48-194 816-950 (950)
369 1n11_A Ankyrin; clathrin, BAND 30.4 2.1E+02 0.0072 22.9 8.3 84 12-105 17-104 (437)
370 3jxi_A Vanilloid receptor-rela 29.6 83 0.0028 23.0 4.9 54 50-104 10-72 (260)
371 2keb_A DNA polymerase subunit 29.6 1E+02 0.0036 19.1 6.6 58 127-186 27-88 (101)
372 3vu7_H DNA repair protein REV1 29.1 97 0.0033 20.2 4.4 30 5-34 59-88 (124)
373 2rfa_A Transient receptor pote 28.8 1.6E+02 0.0053 20.9 6.8 18 13-30 7-24 (232)
374 2yru_A Steroid receptor RNA ac 28.6 1.2E+02 0.0041 19.6 5.2 42 131-172 48-89 (118)
375 1n11_A Ankyrin; clathrin, BAND 28.2 2.1E+02 0.0071 22.9 7.4 110 48-168 17-134 (437)
376 1g1e_B SIN3A; four-helix bundl 28.0 84 0.0029 19.0 3.7 29 229-257 11-39 (89)
377 3sjs_A URE3-BP sequence specif 27.7 1.7E+02 0.0057 20.9 6.5 10 25-34 53-62 (220)
378 2pnn_A Transient receptor pote 27.4 1.2E+02 0.0043 22.2 5.6 55 13-68 17-80 (273)
379 2dzn_A Probable 26S proteasome 27.0 93 0.0032 22.0 4.7 20 13-32 6-25 (228)
380 3f3f_C Nucleoporin NUP85; stru 26.6 2.6E+02 0.0088 23.9 7.5 72 157-231 494-568 (570)
381 2ijq_A Hypothetical protein; s 26.6 1.6E+02 0.0054 20.3 7.1 51 122-172 45-103 (161)
382 3qil_A Clathrin heavy chain 1; 26.5 48 0.0016 21.6 2.5 44 13-60 39-82 (125)
383 3k1s_A PTS system, cellobiose- 25.4 67 0.0023 20.4 3.0 17 89-105 33-49 (109)
384 3m6y_A 4-hydroxy-2-oxoglutarat 24.9 1.1E+02 0.0038 22.8 4.4 79 196-274 170-269 (275)
385 3eiq_C Programmed cell death p 23.9 2.7E+02 0.0094 22.1 15.6 26 82-107 58-83 (358)
386 2dzn_A Probable 26S proteasome 23.8 1.4E+02 0.0047 21.1 5.1 15 89-103 10-24 (228)
387 3kea_A K1L; tropism, ANK repea 23.2 2.4E+02 0.008 21.0 9.3 205 13-239 35-245 (285)
388 3rm5_A Hydroxymethylpyrimidine 21.7 2.9E+02 0.01 23.4 7.2 53 2-54 437-499 (550)
389 1ixm_A SPO0B, protein (sporula 21.7 81 0.0028 22.4 3.3 26 249-274 35-60 (192)
390 3b7b_A Euchromatic histone-lys 21.2 2.2E+02 0.0076 20.1 6.9 23 254-280 182-204 (237)
391 3t5v_B Nuclear mRNA export pro 20.5 2.9E+02 0.0098 22.9 6.6 26 45-70 179-204 (455)
392 2r9g_A AAA ATPase, central reg 20.2 2.5E+02 0.0085 20.2 8.9 63 113-177 15-85 (204)
393 3lxu_X Tripeptidyl-peptidase 2 20.1 4.7E+02 0.016 25.3 8.5 79 113-194 1238-1331(1354)
394 3hzj_A Rabgap1L, RAB GTPase-ac 20.1 3E+02 0.01 21.1 6.5 40 166-206 176-215 (310)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.7e-35 Score=245.14 Aligned_cols=185 Identities=13% Similarity=0.163 Sum_probs=175.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCc---------chHHHHHHHHHHhhcCCCC
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA---------LSFGQYVHSYISTRYDLSV 76 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~ 76 (293)
...++.+|++|++.|++++|+++|++|.+.| ++||..+|+++|.+|++.+. ++.|.++|++|.. .|+.|
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~-~G~~P 103 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV-DKVVP 103 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH-TTCCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH-hCCCC
Confidence 3468889999999999999999999999999 99999999999999987654 6789999999999 89999
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHhhh----CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 036775 77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAY----KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152 (293)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 152 (293)
|..+|++||.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 999999999999999999999999999985 5899999999999999999999999999999999999999999999
Q ss_pred HHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc
Q 036775 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA 193 (293)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (293)
+|++.|++++|.+++++|++ .+..|+..||+.++..|+..
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred HHhhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999997 79999999999999998763
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6.6e-34 Score=238.72 Aligned_cols=200 Identities=11% Similarity=0.109 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHccCCCch-HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCC--------
Q 036775 23 EEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD-------- 93 (293)
Q Consensus 23 ~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------- 93 (293)
..+..+.+.+.+.+ ..+. ...++.+|.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~-~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~ 84 (501)
T 4g26_A 7 SPSENLSRKAKKKA-IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNP 84 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCH
T ss_pred chHHHHHHHHHHhc-ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcc
Confidence 34555666776666 5444 34688899999999999999999999999 8999999999999999998764
Q ss_pred -HHHHHHHHHHhhh----CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHH
Q 036775 94 -VGIAIQVFNMLAY----KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK 168 (293)
Q Consensus 94 -~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 168 (293)
+++|.++|++|.+ ||..||++||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|+
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 7899999999985 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC---CCCchHhHHHHHHHHHHhc
Q 036775 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM---PIEAEWSVWGALLNACRIH 225 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~ 225 (293)
+|.+ .|+.||..||++||.+|++.|++++|.++|++| +..|+..||+.++..|...
T Consensus 165 ~M~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 165 HMVE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9997 799999999999999999999999999999999 7899999999999998654
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.2e-29 Score=216.76 Aligned_cols=274 Identities=8% Similarity=-0.060 Sum_probs=247.7
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 83 (293)
+|..+|+.++..|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+ ..+.+..+++.
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~ 378 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKAVTWLA 378 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTSHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCcccHHHHHH
Confidence 789999999999999999999999999998864 45778899999999999999999999999987 45678889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhh---CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775 84 VINMYVKCGDVGIAIQVFNMLAY---KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160 (293)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 160 (293)
++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|..++.+|.+.|++
T Consensus 379 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCH
Confidence 99999999999999999999875 3577999999999999999999999999998754 3788999999999999999
Q ss_pred hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCch--HhHHHHHHHHHHhcCChhhc
Q 036775 161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-------PIEAE--WSVWGALLNACRIHRNDEMF 231 (293)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~~--~~~~~~l~~~~~~~~~~~~a 231 (293)
++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..+..+|...|++++|
T Consensus 458 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 458 LLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999873 3457889999999999999999999999998 44677 67999999999999999999
Q ss_pred hHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcccee
Q 036775 232 DPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWI 286 (293)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 286 (293)
...++++.+..|.++.+|..++.+|.+.|++++|.++|+++.+ +.|+....+.
T Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~ 588 (597)
T 2xpi_A 536 IDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASD 588 (597)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHH
Confidence 9999999999999999999999999999999999999999987 4566554443
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.4e-28 Score=210.32 Aligned_cols=265 Identities=7% Similarity=-0.112 Sum_probs=179.2
Q ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHH
Q 036775 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG 81 (293)
Q Consensus 2 p~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 81 (293)
|.|++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..+++.+.. .+++..++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 153 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACR 153 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHH
Confidence 567899999999999999999999999999986 567888999999999999999999999998854 47788899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhC-------------------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-
Q 036775 82 NAVINMYVKCGDVGIAIQVFNMLAYK-------------------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVF- 141 (293)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~- 141 (293)
+.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|.++|++|.+.+..
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 233 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchh
Confidence 99999999999999999999864433 3678999999999999999999999998764321
Q ss_pred ---------------------------------------------------------------------CcHhHHHHHHH
Q 036775 142 ---------------------------------------------------------------------PDDVTFIALIS 152 (293)
Q Consensus 142 ---------------------------------------------------------------------p~~~~~~~ll~ 152 (293)
++..+++.++.
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 313 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 45566666666
Q ss_pred HHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CchHhHHHHHHHHHHhcCChhh
Q 036775 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNACRIHRNDEM 230 (293)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~ 230 (293)
++.+.|++++|.++|+++.+. + +.+..++..++.+|.+.|++++|..+++++ .. ..+..+|..++..|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEI-D-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-C-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHc-C-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHH
Confidence 777777777777777766642 1 122333333333333333333333333333 11 1223344444444555555555
Q ss_pred chHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 231 FDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
|..+|+++.+..|.+..+|..++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555554444444444555555555555555555555554443
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.8e-23 Score=171.44 Aligned_cols=264 Identities=14% Similarity=0.059 Sum_probs=156.9
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 83 (293)
.+..+|..+...+.+.|++++|++.|+++.+.. +.+...|..+..++.+.|++++|.+.++.+.+ ..|.+...+..
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 140 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQ--YNPDLYCVRSD 140 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HCTTCTHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHH
Confidence 466778888888888888888888888887742 33455677788888888888888888888776 23344555667
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH------
Q 036775 84 VINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC------ 154 (293)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~------ 154 (293)
+...+...|++++|.+.|+++.+. +..+|..+...+...|++++|...|+++.+.+.. +...+..+...+
T Consensus 141 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCH
Confidence 777777778888888888777643 3456777777777777777777777776654322 233444444444
Q ss_pred ----------------------------hcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 155 ----------------------------SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 155 ----------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
.+.|++++|...++++.+ ..+.+..++..+..+|.+.|++++|...|+++
T Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 297 (388)
T 1w3b_A 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297 (388)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444443 11122334444444555555555555555444
Q ss_pred -C-CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 207 -P-IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 207 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
. ...+..++..+...+...|++++|...++++.+..|.+..++..+..++.+.|++++|.+.|+++.+
T Consensus 298 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 298 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 1223334444444555555555555555555544444455555555555555555555555555443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=1.7e-23 Score=171.68 Aligned_cols=248 Identities=11% Similarity=0.064 Sum_probs=181.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch-HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
..+|..+..++.+.|++++|++.|+++.+. .|+ ...+..+...+...|++++|.+.++.+.+ ..|.+..++..+
T Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 175 (388)
T 1w3b_A 101 IDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQPNFAVAWSNL 175 (388)
T ss_dssp HHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 345666666666666666666666665553 222 23344444445555555555555555544 223334444555
Q ss_pred HHHHHHcCCHHHHHHHHHH----------------------------------hhh--C-CcccHHHHHHHHHhcCCHHH
Q 036775 85 INMYVKCGDVGIAIQVFNM----------------------------------LAY--K-DMISWSTVISGLAMNGCGRQ 127 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~----------------------------------~~~--~-~~~~~~~li~~~~~~~~~~~ 127 (293)
...+.+.|++++|.+.|++ ..+ | +..++..+..++...|++++
T Consensus 176 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 255 (388)
T 1w3b_A 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL 255 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555444 432 2 45678889999999999999
Q ss_pred HHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036775 128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM- 206 (293)
Q Consensus 128 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~- 206 (293)
|.+.|+++.+.+.. +..++..+..++.+.|++++|...++++.+ ..+.+..++..+...+.+.|++++|...++++
T Consensus 256 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 256 AIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp HHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999987543 577899999999999999999999999997 34567789999999999999999999999998
Q ss_pred CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCC
Q 036775 207 PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADR 261 (293)
Q Consensus 207 ~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (293)
...|+ ..++..+...+...|++++|...++++.+..|.++..|..+...+...|+
T Consensus 333 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 55554 66899999999999999999999999999989899999999888776653
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.9e-22 Score=167.30 Aligned_cols=263 Identities=11% Similarity=0.007 Sum_probs=144.7
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
+...|..+...+.+.|++++|+.+|+++.+. .+.+...+..+..++...|++++|...++.+.+ ..+.+..++..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 100 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ--LKMDFTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcHHHHHHH
Confidence 5566667777777777777777777777654 244566666666777777777777777777666 234445566666
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCc------ccHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhH
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYKDM------ISWSTV------------ISGLAMNGCGRQALQLFSLMIINGVFPDDVT 146 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 146 (293)
..+|.+.|++++|.+.|+++.+.++ ..+..+ ...+...|++++|...|+++.+... .+..+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 179 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAEL 179 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Confidence 7777777777777777766654322 333333 2225555566666666655554322 14444
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc---------------
Q 036775 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA--------------- 210 (293)
Q Consensus 147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~--------------- 210 (293)
+..+..++.+.|++++|...|+.+.+. .+.+..++..+..+|...|++++|...|+++ ...|
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 555555555555555555555555431 1223444445555555555555555555444 1122
Q ss_pred -------------------------------h-----HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHH
Q 036775 211 -------------------------------E-----WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSN 254 (293)
Q Consensus 211 -------------------------------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 254 (293)
+ ...+..+...+...|++++|...++++.+..|.++.+|..+..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 2 2234444444555555555555555555544545555555555
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q 036775 255 TFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 255 ~~~~~g~~~~a~~~~~~m~~ 274 (293)
+|...|++++|.+.+++..+
T Consensus 338 ~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 55555555555555555443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.8e-22 Score=168.53 Aligned_cols=248 Identities=8% Similarity=-0.020 Sum_probs=173.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchH---HHHHHHHHH------------hcccCcchHHHHHHHHHHh
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNE---ATLVNVLSA------------CSSISALSFGQYVHSYIST 70 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~---~~~~~ll~~------------~~~~~~~~~a~~~~~~~~~ 70 (293)
..+|..+...|.+.|++++|.+.|+++.+.. +.+. ..+..+... +...|++++|...++.+.+
T Consensus 94 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 171 (450)
T 2y4t_A 94 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 171 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555555555555555555421 2222 344444222 4555555666666655554
Q ss_pred hcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh---CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHH
Q 036775 71 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY---KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147 (293)
Q Consensus 71 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 147 (293)
..+.+..++..++.+|.+.|++++|.++|+++.+ .+..+|..+..++...|++++|...|+++.+.... +...+
T Consensus 172 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 248 (450)
T 2y4t_A 172 --VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCF 248 (450)
T ss_dssp --HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred --hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHH
Confidence 2344556667777777777777777777777754 25677888888888999999999999888765322 33444
Q ss_pred HHH------------HHHHhcCCChhHHHHHHHHhhhhcCCCcc--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-h
Q 036775 148 IAL------------ISACSHGGLVDQGLILFKAMSTVYEIVPQ--TQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-E 211 (293)
Q Consensus 148 ~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~ 211 (293)
..+ ...+.+.|++++|...|+.+.+...-.+. ...+..+..++.+.|++++|...++++ ...| +
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 328 (450)
T 2y4t_A 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 444 67888899999999999998863211111 347888999999999999999999997 4444 5
Q ss_pred HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhc
Q 036775 212 WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG 258 (293)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 258 (293)
...|..+..+|...|+++.|...++++.+..|.++..+..+..+...
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 77899999999999999999999999999989888888887665443
No 9
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=1.1e-21 Score=156.88 Aligned_cols=272 Identities=9% Similarity=-0.038 Sum_probs=233.3
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 83 (293)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|...++.+.+ ..+.+...+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~ 95 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVD--LYPSNPVSWFA 95 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTSTHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHH
Confidence 356677788889999999999999999998863 45556777788888999999999999999988 45567788899
Q ss_pred HHHHHHHcC-CHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC
Q 036775 84 VINMYVKCG-DVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159 (293)
Q Consensus 84 l~~~~~~~~-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 159 (293)
+...+...| ++++|.+.|++..+. +...|..+...+...|++++|...|+++.+.... +...+..+...+...|+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 999999999 999999999998854 5678999999999999999999999999886543 45677778999999999
Q ss_pred hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CC----------CchHhHHHHHHHHHHhcCCh
Q 036775 160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PI----------EAEWSVWGALLNACRIHRND 228 (293)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~----------~~~~~~~~~l~~~~~~~~~~ 228 (293)
+++|...++++.+ ..+.+...+..+...|...|++++|...+++. .. ..+...+..+...+...|++
T Consensus 175 ~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999986 33456788999999999999999999999887 11 23356888999999999999
Q ss_pred hhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccc
Q 036775 229 EMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCS 284 (293)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 284 (293)
+.|...+++..+..|.+...+..+..++.+.|++++|.+.|++..+ +.|+....
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~ 306 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFS 306 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHH
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHH
Confidence 9999999999999999999999999999999999999999998665 45655433
No 10
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=3.5e-21 Score=156.52 Aligned_cols=262 Identities=9% Similarity=-0.147 Sum_probs=217.0
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 83 (293)
.+...|..+...+.+.|++++|++.|+++.+. .+.+...+..+..++...|++++|...++++.+ ..+.+..++..
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 138 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLE--LQPNNLKALMA 138 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHHH
Confidence 45667889999999999999999999999886 355678899999999999999999999999988 34566888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhC---C----------cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CcHhHHHH
Q 036775 84 VINMYVKCGDVGIAIQVFNMLAYK---D----------MISWSTVISGLAMNGCGRQALQLFSLMIINGVF-PDDVTFIA 149 (293)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~~---~----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ 149 (293)
+..+|...|++++|...|+++.+. + ...+..+...+...|++++|...|+++.+.... ++..++..
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 999999999999999999998753 1 223344588899999999999999999886433 26788999
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCC
Q 036775 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRN 227 (293)
Q Consensus 150 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~ 227 (293)
+...+...|++++|...++++.+. .+.+..++..+..+|...|++++|...|++. ...| +...+..+...|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 999999999999999999999872 3456788999999999999999999999998 4445 46688999999999999
Q ss_pred hhhchHHHHHHHhhcCC------------chhhHHHHHHHHhcCCCHHHHHHHHHH
Q 036775 228 DEMFDPIRQELVNKKGV------------SVGTFALMSNTFAGADRWEDANKIRDE 271 (293)
Q Consensus 228 ~~~a~~~~~~~~~~~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~ 271 (293)
+++|...+++..+..|. +..+|..+..++...|+.+.+.++.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998876543 367899999999999999999887754
No 11
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=5.1e-21 Score=155.57 Aligned_cols=261 Identities=10% Similarity=-0.068 Sum_probs=219.2
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
+...|..+...+.+.|++++|+..|+++.+. .+.+...+..+..++...|++++|...++.+.+ ..+.+..++..+
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l 138 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLE--LKPDNQTALMAL 138 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHh--cCCCCHHHHHHH
Confidence 4667888999999999999999999999886 355677888999999999999999999999988 345678889999
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCC---cccHHH---------------HHHHHHhcCCHHHHHHHHHHHHhCCCCC-cHh
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYKD---MISWST---------------VISGLAMNGCGRQALQLFSLMIINGVFP-DDV 145 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~---------------li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~ 145 (293)
...|...|++++|.+.|+++.+.+ ...+.. .+..+...|++++|...|+++.+..... +..
T Consensus 139 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 218 (368)
T 1fch_A 139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD 218 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHH
Confidence 999999999999999999987642 222211 2333448899999999999998764332 578
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHH
Q 036775 146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACR 223 (293)
Q Consensus 146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~ 223 (293)
++..+...+.+.|++++|...++++.+. .+.+...+..+...|...|++++|...|++. ...| +...+..+...|.
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 8999999999999999999999999862 2445778999999999999999999999998 3344 4668888999999
Q ss_pred hcCChhhchHHHHHHHhhcCCc-----------hhhHHHHHHHHhcCCCHHHHHHHHHH
Q 036775 224 IHRNDEMFDPIRQELVNKKGVS-----------VGTFALMSNTFAGADRWEDANKIRDE 271 (293)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~ 271 (293)
..|+++.|...+++..+..|.+ ..+|..+..++...|++++|..++++
T Consensus 297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 9999999999999998877655 78899999999999999999998763
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.5e-19 Score=146.04 Aligned_cols=269 Identities=9% Similarity=-0.001 Sum_probs=181.1
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCC---CchhHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLS---VSNLVG 81 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ 81 (293)
+..+|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+ ..+ .+...+
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~ 111 (359)
T 3ieg_A 36 NYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK--SNPSEQEEKEAE 111 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--SCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCcccChHHHH
Confidence 45566666667777777777777777766642 23455666666667777777777777777655 222 233334
Q ss_pred HHH------------HHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhH
Q 036775 82 NAV------------INMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT 146 (293)
Q Consensus 82 ~~l------------~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 146 (293)
..+ ...+...|++++|.+.++++.+. +...+..+..++...|++++|...++++.+... .+..+
T Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 190 (359)
T 3ieg_A 112 SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEA 190 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHH
Confidence 333 46666777777777777766542 445666777777777777777777777776543 25667
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHH------------HHHHHHHhcCChHHHHHHHHhC-CCCchH-
Q 036775 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA------------CVVDMYGRAGLLEEAEAFIREM-PIEAEW- 212 (293)
Q Consensus 147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~-~~~~~~- 212 (293)
+..+...+...|++++|...++...+.. +.+...+. .+...+.+.|++++|...+++. ...|+.
T Consensus 191 ~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 268 (359)
T 3ieg_A 191 FYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVA 268 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Confidence 7777777777788888888877777521 22222222 2255677788888888888776 222322
Q ss_pred ----hHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775 213 ----SVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG 282 (293)
Q Consensus 213 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 282 (293)
..+..+...+...|+++.|...+++..+..|.++.++..+..++...|++++|.+.|++..+ +.|+..
T Consensus 269 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~ 340 (359)
T 3ieg_A 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQ 340 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCh
Confidence 22445666788888888888888888888888888888888888888899999888888775 345543
No 13
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=1.1e-20 Score=150.82 Aligned_cols=261 Identities=8% Similarity=-0.115 Sum_probs=220.7
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
+...|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++.+.+ ..+.+..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCcCCHHHHHHH
Confidence 55667788889999999999999999998863 45677888899999999999999999999988 345677888999
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhC---CcccHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhCCCCCcHhH
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYK---DMISWSTV--------------IS-GLAMNGCGRQALQLFSLMIINGVFPDDVT 146 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 146 (293)
...+...|++++|.+.++++.+. +...+..+ .. .+...|++++|...++++.+.... +...
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 174 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQL 174 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHH
Confidence 99999999999999999998864 33334433 22 377789999999999999876543 7788
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHh
Q 036775 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRI 224 (293)
Q Consensus 147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~ 224 (293)
+..+...+...|++++|...++.+.+. .+.+...+..+...|...|++++|...+++. ...| +...+..+...+..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999862 2445778999999999999999999999997 3334 56688889999999
Q ss_pred cCChhhchHHHHHHHhhcCC------------chhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775 225 HRNDEMFDPIRQELVNKKGV------------SVGTFALMSNTFAGADRWEDANKIRDEI 272 (293)
Q Consensus 225 ~~~~~~a~~~~~~~~~~~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m 272 (293)
.|+++.|...+++..+..|. +..++..+..++.+.|++++|..++++.
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999988777 6889999999999999999999998753
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=7.4e-19 Score=141.99 Aligned_cols=269 Identities=11% Similarity=0.006 Sum_probs=224.1
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
|+..|..+...+...|++++|+..|+++.+. .+.+...+..+..++...|++++|...++.+.+ ..+.+...+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA--LKMDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCcchHHHHH
Confidence 5678888999999999999999999999886 355678899999999999999999999999987 345567888999
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCc------ccHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhH
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYKDM------ISWSTV------------ISGLAMNGCGRQALQLFSLMIINGVFPDDVT 146 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 146 (293)
...+...|++++|...|+++.+.++ ..+..+ ...+...|++++|.+.++++.+... .+...
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 156 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAEL 156 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHH
Confidence 9999999999999999999986544 233333 5788999999999999999988654 36788
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchH-hHHH--------
Q 036775 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW-SVWG-------- 216 (293)
Q Consensus 147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~-~~~~-------- 216 (293)
+..+...+...|++++|...++.+.+ ..+.+..++..+...|...|++++|...+++. ...|+. ..+.
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence 99999999999999999999999986 33556788999999999999999999999988 323332 2222
Q ss_pred ----HHHHHHHhcCChhhchHHHHHHHhhcCCchh----hHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775 217 ----ALLNACRIHRNDEMFDPIRQELVNKKGVSVG----TFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG 282 (293)
Q Consensus 217 ----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 282 (293)
.+...+...|+++.|...+++..+..|.++. .+..+..++...|++++|.+.+++..+. .|+..
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~ 306 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNV 306 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccH
Confidence 2255588999999999999999998877653 3566889999999999999999998874 45443
No 15
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1e-19 Score=154.31 Aligned_cols=180 Identities=10% Similarity=-0.098 Sum_probs=117.1
Q ss_pred cCCHHHHHHHHHHhhh----------------C-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHH
Q 036775 91 CGDVGIAIQVFNMLAY----------------K-DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153 (293)
Q Consensus 91 ~~~~~~A~~~~~~~~~----------------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 153 (293)
.|++++|..+|+++.+ + +..++..+...+...|++++|...|+++.+.... ..++..+..+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHH
Confidence 5566666666665544 1 2345556666666677777777777766655332 5666666666
Q ss_pred HhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhc
Q 036775 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMF 231 (293)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a 231 (293)
+...|++++|...++.+.+ ..+.+...+..+...|...|++++|...+++. ...| +...+..+...+...|+++.|
T Consensus 280 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALK--LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHT--TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHhh--cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777776664 22334556666777777777777777777766 2222 344566666667777777777
Q ss_pred hHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 232 DPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
...++++.+..|.++.++..+...+...|++++|.+.++++.+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 358 ETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777776666667777777777777777777777776655
No 16
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.9e-19 Score=150.68 Aligned_cols=263 Identities=8% Similarity=-0.079 Sum_probs=222.4
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
....|......+.+.|++++|+..|+++.+. .|+...|..+..++...|++++|...++.+.+ ..|.+..++..+
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 79 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALE--LKPDYSKVLLRR 79 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCSCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhc--cChHHHHHHHHH
Confidence 4566778888999999999999999999984 47999999999999999999999999999988 346677889999
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCc-------------------------------------------------------
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYKDM------------------------------------------------------- 109 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~------------------------------------------------------- 109 (293)
..+|.+.|++++|...|+++.+.+.
T Consensus 80 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 80 ASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 9999999999999999998864321
Q ss_pred ---------------------------ccHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCcHhH
Q 036775 110 ---------------------------ISWSTVISGLAM---NGCGRQALQLFSLMII-----NGV--------FPDDVT 146 (293)
Q Consensus 110 ---------------------------~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~g~--------~p~~~~ 146 (293)
..+......+.. .|++++|...|+++.+ ... +.+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 112222333333 7999999999999987 311 123567
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHh
Q 036775 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRI 224 (293)
Q Consensus 147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~ 224 (293)
+..+...+...|++++|...++.+.+. . |+...+..+..+|...|++++|...+++. ...| +...+..+...+..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~-~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIEL-F--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh-C--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH
Confidence 888888999999999999999999873 3 33778889999999999999999999988 4444 55678888999999
Q ss_pred cCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775 225 HRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM 275 (293)
Q Consensus 225 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 275 (293)
.|+++.|...+++..+..|.+...+..+...+...|++++|.++++++.+.
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999889999999999999999999999999998874
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.2e-18 Score=139.31 Aligned_cols=254 Identities=10% Similarity=-0.035 Sum_probs=216.3
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccC-cchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALSFGQYVHSYISTRYDLSVSNLVGNA 83 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ 83 (293)
+...+..++..+...|++++|..+++++.+. .+.+...+..+...+...| ++++|...++.+.+ ..+.+...+..
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~ 130 (330)
T 3hym_B 55 HASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATT--LEKTYGPAWIA 130 (330)
T ss_dssp CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHT--TCTTCTHHHHH
T ss_pred ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCccHHHHHH
Confidence 4556777888999999999999999999886 3456778888889999999 99999999999987 34556788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775 84 VINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160 (293)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 160 (293)
+...+...|++++|.+.|+++.+. +...+..+...+...|++++|.+.+++..+.... +...+..+...+...|++
T Consensus 131 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~ 209 (330)
T 3hym_B 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEW 209 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccH
Confidence 999999999999999999998753 4667888999999999999999999999887543 678899999999999999
Q ss_pred hHHHHHHHHhhhhcC-------CCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhc
Q 036775 161 DQGLILFKAMSTVYE-------IVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMF 231 (293)
Q Consensus 161 ~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a 231 (293)
++|...++++.+... .+....++..+..+|...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 210 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence 999999999886321 1334578999999999999999999999988 3333 556788899999999999999
Q ss_pred hHHHHHHHhhcCCchhhHHHHHHHH-hcCCCHH
Q 036775 232 DPIRQELVNKKGVSVGTFALMSNTF-AGADRWE 263 (293)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~ 263 (293)
...+++..+..|.++..+..+..++ ...|+.+
T Consensus 290 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 290 VDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999999999988 5666654
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=9.8e-20 Score=147.97 Aligned_cols=258 Identities=8% Similarity=-0.028 Sum_probs=203.6
Q ss_pred HHHHcCCHHHHHH-HHHHHHHccCCCc--hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHc
Q 036775 15 GYAERGFCEEAVS-VFQEMEKTKEAEP--NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC 91 (293)
Q Consensus 15 ~~~~~~~~~~a~~-~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 91 (293)
++...|++++|++ .|++.....+..| +...+..+...+...|++++|...++.+.+ ..+.+..++..+..++.+.
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ--QDPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHC
Confidence 3445678888888 8887655321222 345677888899999999999999999988 4566788899999999999
Q ss_pred CCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHH---------------HHHH
Q 036775 92 GDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA---------------LISA 153 (293)
Q Consensus 92 ~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~---------------ll~~ 153 (293)
|++++|.+.|+++.+. +..++..+..++...|++++|...|+++...... +...+.. .+..
T Consensus 112 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 112 EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 9999999999998753 5678999999999999999999999999886543 2222211 2334
Q ss_pred HhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhc
Q 036775 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMF 231 (293)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a 231 (293)
+...|++++|...++.+.+.....++..++..+...|...|++++|...+++. ...| +...+..+...+...|+++.|
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 44889999999999999873222225788999999999999999999999998 3344 466889999999999999999
Q ss_pred hHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775 232 DPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM 275 (293)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 275 (293)
...+++..+..|.+..++..+..++.+.|++++|...|++..+.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998763
No 19
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=6e-19 Score=138.74 Aligned_cols=245 Identities=9% Similarity=-0.036 Sum_probs=177.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCchH--HHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHH
Q 036775 13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNE--ATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK 90 (293)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 90 (293)
|......|+++.|+..++.... ..|+. .....+.+++...|+++.|...++. ..+|+..++..+...+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcC
Confidence 3445667888888888777644 34443 3455667788888888887764432 245666777788888888
Q ss_pred cCCHHHHHHHHHHhhh----C-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHH
Q 036775 91 CGDVGIAIQVFNMLAY----K-DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI 165 (293)
Q Consensus 91 ~~~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 165 (293)
.++.++|++.++++.. | +...+..+..++...|++++|++.+++ +.+...+..+...+.+.|++++|.+
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 8888888888888753 3 344566667788888888888888877 3567778888888888888888888
Q ss_pred HHHHhhhhcCCCcchhHH---HHHHHHHHhcCChHHHHHHHHhC--CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775 166 LFKAMSTVYEIVPQTQHY---ACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240 (293)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (293)
.++.+.+. .|+.... ..++..+...|++++|..+|+++ ....+...++.+..++...|++++|...+++..+
T Consensus 152 ~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888762 2443211 22334444558888888888887 2234566788888888888888888888888888
Q ss_pred hcCCchhhHHHHHHHHhcCCCHHH-HHHHHHHHHH
Q 036775 241 KKGVSVGTFALMSNTFAGADRWED-ANKIRDEIRR 274 (293)
Q Consensus 241 ~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~ 274 (293)
..|.++.++..++..+...|+.++ +.++++++.+
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 888888888888888888888865 5678777765
No 20
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.84 E-value=3.8e-21 Score=167.46 Aligned_cols=130 Identities=13% Similarity=0.104 Sum_probs=116.1
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHHhh-------hCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHH
Q 036775 76 VSNLVGNAVINMYVKCGDVGIAIQVFNMLA-------YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFI 148 (293)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 148 (293)
.-..+|++||++||+.|++++|.++|++|. .||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345689999999999999999999998875 4699999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCh-hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 149 ALISACSHGGLV-DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 149 ~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
++|.++++.|+. ++|.++|++|.+ .|+.||..+|++++....+.+-++.+.++...+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999985 789999999998 799999999999998887776665555554444
No 21
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=4.4e-18 Score=145.10 Aligned_cols=262 Identities=11% Similarity=-0.040 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN 86 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (293)
..|..+...+.+.|++++|++.|+++.+. .+.+...+..+..++...|++++|.+.++.+.+ ..|.+...+..+..
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALE--IKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHH
Confidence 44555566666666666666666666654 234455666666666666666666666666655 23445555666666
Q ss_pred HHHHcCCHHHHHHHH-----------------------------------------------------------------
Q 036775 87 MYVKCGDVGIAIQVF----------------------------------------------------------------- 101 (293)
Q Consensus 87 ~~~~~~~~~~A~~~~----------------------------------------------------------------- 101 (293)
++...|++++|...|
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 666666666665554
Q ss_pred --------------------------------------------HHhhhCCc----------ccHHHHHHHHHhcCCHHH
Q 036775 102 --------------------------------------------NMLAYKDM----------ISWSTVISGLAMNGCGRQ 127 (293)
Q Consensus 102 --------------------------------------------~~~~~~~~----------~~~~~li~~~~~~~~~~~ 127 (293)
+++.+.++ .++..+...+...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 33332211 135566677788899999
Q ss_pred HHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036775 128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM- 206 (293)
Q Consensus 128 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~- 206 (293)
|...|+++.+. .|+..++..+...+...|++++|...++.+.+. .+.+..++..+...|...|++++|...+++.
T Consensus 262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999876 455788888999999999999999999999862 2445778899999999999999999999988
Q ss_pred CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775 207 PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG 276 (293)
Q Consensus 207 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 276 (293)
...| +...+..+...+...|+++.|...++++.+..|.++.++..+...+...|++++|.+.|++..+..
T Consensus 338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 3333 456788888889999999999999999999999899999999999999999999999999987643
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=3e-19 Score=145.09 Aligned_cols=233 Identities=6% Similarity=-0.090 Sum_probs=193.2
Q ss_pred hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHH
Q 036775 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVIS 117 (293)
Q Consensus 41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~ 117 (293)
+...+..+...+.+.|++++|...++.+.+ ..|.+..++..+...|.+.|++++|+..|+++.+. +..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAIL--QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 345588888999999999999999999988 45667888999999999999999999999998753 5678999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC---------cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHH
Q 036775 118 GLAMNGCGRQALQLFSLMIINGVFP---------DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188 (293)
Q Consensus 118 ~~~~~~~~~~a~~~~~~m~~~g~~p---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (293)
++...|++++|...|+++.+..... ....+..+...+...|++++|...++++.+.....++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999998753210 1223334577889999999999999999974322226788999999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHH
Q 036775 189 MYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDAN 266 (293)
Q Consensus 189 ~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 266 (293)
.|...|++++|...|++. ...| +..+|..+...|...|++++|...+++..+..|.+..++..+..+|.+.|++++|.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999998 3334 56789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc
Q 036775 267 KIRDEIRRM 275 (293)
Q Consensus 267 ~~~~~m~~~ 275 (293)
..|++..+.
T Consensus 302 ~~~~~al~~ 310 (365)
T 4eqf_A 302 SNFLTALSL 310 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998763
No 23
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=3.4e-21 Score=167.75 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=121.7
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHH
Q 036775 110 ISWSTVISGLAMNGCGRQALQLFSLMII---NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV 186 (293)
Q Consensus 110 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 186 (293)
.|||+||++|++.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+ .|+.||..||+++
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHHHHHH
Confidence 4899999999999999999999988764 58999999999999999999999999999999997 7999999999999
Q ss_pred HHHHHhcCCh-HHHHHHHHhC---CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCC------chhhHHHHHHHH
Q 036775 187 VDMYGRAGLL-EEAEAFIREM---PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV------SVGTFALMSNTF 256 (293)
Q Consensus 187 ~~~~~~~g~~-~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~li~~~ 256 (293)
|.++++.|+. ++|.++|++| |+.||..+|++++.++.+.+-.+.+. ++.....| ...+-..|...|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vr----kv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH----KVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHG----GGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHH----HhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999985 7899999999 89999999999987665543333333 33222222 234556677777
Q ss_pred hcCC
Q 036775 257 AGAD 260 (293)
Q Consensus 257 ~~~g 260 (293)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 7665
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=5.1e-18 Score=133.42 Aligned_cols=232 Identities=10% Similarity=-0.021 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCC-CCchhHHHHHH
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDL-SVSNLVGNAVI 85 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~ 85 (293)
...-.+..+|...|+++.|+..++. . .+|+..++..+...+...++.++|.+.++.+.. .+. |.+...+..+.
T Consensus 35 e~~~~l~r~yi~~g~~~~al~~~~~---~--~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~-~~~~P~~~~~~~~la 108 (291)
T 3mkr_A 35 ERDVFLYRAYLAQRKYGVVLDEIKP---S--SAPELQAVRMFAEYLASHSRRDAIVAELDREMS-RSVDVTNTTFLLMAA 108 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSCT---T--SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHH-SCCCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHhcc---c--CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHh-cccCCCCHHHHHHHH
Confidence 3455678899999999999986654 2 567888999999999999999999999999887 454 44666778888
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHH---HHHHHHHhcCCChhH
Q 036775 86 NMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF---IALISACSHGGLVDQ 162 (293)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~~~~~~ 162 (293)
..+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.|+++.+.. |+.... ...+..+...|++++
T Consensus 109 ~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~e 184 (291)
T 3mkr_A 109 SIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQD 184 (291)
T ss_dssp HHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHH
T ss_pred HHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHH
Confidence 999999999999999998 4577789999999999999999999999998864 443211 223344556799999
Q ss_pred HHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhh-chHHHHHHH
Q 036775 163 GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEM-FDPIRQELV 239 (293)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~ 239 (293)
|..+|+++.+. .+.+...++.+..++.+.|++++|...|++. ...| +..++..++..+...|+.++ +..+++++.
T Consensus 185 A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 185 AYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999973 4667889999999999999999999999997 4444 56688889989989999865 678999999
Q ss_pred hhcCCchhhHH
Q 036775 240 NKKGVSVGTFA 250 (293)
Q Consensus 240 ~~~~~~~~~~~ 250 (293)
+..|.++.+..
T Consensus 263 ~~~P~~~~~~d 273 (291)
T 3mkr_A 263 DAHRSHPFIKE 273 (291)
T ss_dssp HHCTTCHHHHH
T ss_pred HhCCCChHHHH
Confidence 99988876543
No 25
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.80 E-value=2.8e-17 Score=140.10 Aligned_cols=250 Identities=6% Similarity=-0.085 Sum_probs=206.5
Q ss_pred CCHHHHHHHHHHHHHccCCCch-----HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCH
Q 036775 20 GFCEEAVSVFQEMEKTKEAEPN-----EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 94 (293)
Q Consensus 20 ~~~~~a~~~~~~m~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 94 (293)
|++++|+.+|+++.+..+..++ ..++..+...+...|++++|...++.+.+ ..|+...+..+...+...|++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN---LHPTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhcCH
Confidence 5899999999999875311111 23466667778889999999999999987 345578888999999999999
Q ss_pred HHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775 95 GIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171 (293)
Q Consensus 95 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 171 (293)
++|.+.|+++.+. +..+|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...++.+.
T Consensus 293 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998753 5678999999999999999999999999886543 56788899999999999999999999998
Q ss_pred hhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-------hHhHHHHHHHHHHhc----------CChhhchH
Q 036775 172 TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-------EWSVWGALLNACRIH----------RNDEMFDP 233 (293)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-------~~~~~~~l~~~~~~~----------~~~~~a~~ 233 (293)
+. .+.+...+..+...|...|++++|...|+++ ...| ....+......+... |+++.|..
T Consensus 372 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~ 449 (537)
T 3fp2_A 372 LK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449 (537)
T ss_dssp HH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred Hh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHH
Confidence 73 3455678899999999999999999999987 1111 122234445567777 99999999
Q ss_pred HHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775 234 IRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM 275 (293)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 275 (293)
.+++..+..|.+..++..+..++.+.|++++|.+.|++..+.
T Consensus 450 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 450 LLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998774
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=4.4e-19 Score=143.47 Aligned_cols=234 Identities=12% Similarity=0.075 Sum_probs=116.9
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
+..+|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++...+ . .+++.+.+.|
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark-~--~~~~~i~~~L 100 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK-K--ARESYVETEL 100 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-h--CccchhHHHH
Confidence 335999999999999999999999964 35777999999999999999999998887766 2 4557778999
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHH
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 164 (293)
+.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|..+..++.+.|++++|.
T Consensus 101 i~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 101 IFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp --------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHH
Confidence 999999999999998885 477789999999999999999999999987 47999999999999999999
Q ss_pred HHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCC
Q 036775 165 ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 244 (293)
+.++.+. ++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.++++..+++......+.
T Consensus 169 ea~~KA~-------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le~a 239 (449)
T 1b89_A 169 DGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALGLERA 239 (449)
T ss_dssp HHHHHHT-------CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHcC-------CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCcHH
Confidence 9999872 5788999999999999999998888777656655 446888899999999999999999988887
Q ss_pred chhhHHHHHHHHhcC--CCHHHHHHHH
Q 036775 245 SVGTFALMSNTFAGA--DRWEDANKIR 269 (293)
Q Consensus 245 ~~~~~~~li~~~~~~--g~~~~a~~~~ 269 (293)
....|.-|..+|++- ++..+..+.|
T Consensus 240 h~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 240 HMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 888888888888765 3444444443
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.3e-17 Score=126.23 Aligned_cols=224 Identities=10% Similarity=-0.039 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhc-CCCCc----hhH
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRY-DLSVS----NLV 80 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~ 80 (293)
...|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...++.+.+.. ...++ ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 3445555666666666666666666665542 444555555555556666666666555554411 00011 244
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775 81 GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160 (293)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 160 (293)
+..+...+.+.|++++|...|++..+.+.. ...+...|++++|...++++....
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~--------------------- 135 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN--------------------- 135 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC---------------------
Confidence 455555555555555555555554432211 122333444444444444444331
Q ss_pred hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-chHhHHHHHHHHHHhcCChhhchHHHHHH
Q 036775 161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIE-AEWSVWGALLNACRIHRNDEMFDPIRQEL 238 (293)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 238 (293)
+.+...+..+...+...|++++|...+++. ... .+...+..+...+...|+++.|...+++.
T Consensus 136 ----------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 136 ----------------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp ----------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 122334444444555555555555555444 111 12334444445555555555555555555
Q ss_pred HhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 239 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
.+..|.++..+..+..++...|++++|.+.+++..+
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555443
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=2.5e-17 Score=131.40 Aligned_cols=230 Identities=10% Similarity=0.003 Sum_probs=193.2
Q ss_pred hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHH
Q 036775 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVIS 117 (293)
Q Consensus 41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~ 117 (293)
+...+......+...|++++|..+++.+.+ ..+.+...+..+...+...|++++|.+.|+++.+. +..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQ--AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 445567778889999999999999999988 44567788899999999999999999999998753 5667888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHH--------------HH-HHhcCCChhHHHHHHHHhhhhcCCCcchhH
Q 036775 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL--------------IS-ACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182 (293)
Q Consensus 118 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 182 (293)
.+...|++++|.+.++++.+.... +...+..+ .. .+...|++++|...++.+.+. .+.+...
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 174 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQL 174 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHH
Confidence 999999999999999999876432 22333332 22 377889999999999999862 3446788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCC
Q 036775 183 YACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGAD 260 (293)
Q Consensus 183 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 260 (293)
+..+...|...|++++|...+++. ...| +...+..+...+...|++++|...+++..+..|.+..++..+..++...|
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999988 3334 46688889999999999999999999999999989999999999999999
Q ss_pred CHHHHHHHHHHHHHc
Q 036775 261 RWEDANKIRDEIRRM 275 (293)
Q Consensus 261 ~~~~a~~~~~~m~~~ 275 (293)
++++|.+.+++..+.
T Consensus 255 ~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYM 269 (327)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999998774
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=6.7e-17 Score=124.47 Aligned_cols=187 Identities=11% Similarity=-0.004 Sum_probs=142.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhh--CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--Cc----HhHHHHH
Q 036775 79 LVGNAVINMYVKCGDVGIAIQVFNMLAY--KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF--PD----DVTFIAL 150 (293)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~----~~~~~~l 150 (293)
..+..+...+...|++++|...|++..+ .+..+|..+..++...|++++|...+++..+.... |+ ..++..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3455666666666777777666666543 34555666667777777777777777766553211 11 4677788
Q ss_pred HHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCCh
Q 036775 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRND 228 (293)
Q Consensus 151 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~ 228 (293)
...+...|++++|...++...+. .|+. ..+...|++++|...+++. ...| +...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 88888888888888888888762 3442 3566778899999999988 3344 445788888889999999
Q ss_pred hhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775 229 EMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM 275 (293)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 275 (293)
+.|...+++..+..|.++.++..+..++...|++++|.+.+++..+.
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998874
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.78 E-value=2e-17 Score=124.43 Aligned_cols=197 Identities=12% Similarity=-0.061 Sum_probs=151.0
Q ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH
Q 036775 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV 80 (293)
Q Consensus 1 ~p~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (293)
|| ++...|..+...+.+.|++++|+..|++..+. .+.+...+..+..++.+.|++++|...+++..+ ..|.+...
T Consensus 1 ~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a 75 (217)
T 2pl2_A 1 MQ-TAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGG 75 (217)
T ss_dssp ----CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHH
Confidence 44 67788889999999999999999999999885 355677888888899999999999999999987 34556778
Q ss_pred HHHHHHHHHHc-----------CCHHHHHHHHHHhhh--C-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhH
Q 036775 81 GNAVINMYVKC-----------GDVGIAIQVFNMLAY--K-DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT 146 (293)
Q Consensus 81 ~~~l~~~~~~~-----------~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 146 (293)
+..+...+.+. |++++|+..|++..+ | +...|..+..++...|++++|+..|++..+.. .+...
T Consensus 76 ~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 153 (217)
T 2pl2_A 76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEI 153 (217)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHH
Confidence 88899999998 999999999988875 3 45678888888889999999999999888876 57788
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
+..+..++...|++++|...|+...+. .+.+...+..+..++...|++++|...+++.
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 888888888999999999999888862 2345677888888888899999998888765
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.78 E-value=3.2e-17 Score=123.38 Aligned_cols=196 Identities=12% Similarity=-0.008 Sum_probs=147.3
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHH
Q 036775 75 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151 (293)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 151 (293)
|++...+..+...+.+.|++++|...|++..+. +...|..+..++.+.|++++|+..|++..+..+. +...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 566677778888888888888888888887754 4556777888888888888888888888776433 566777788
Q ss_pred HHHhcC-----------CChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhHHHHHH
Q 036775 152 SACSHG-----------GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALL 219 (293)
Q Consensus 152 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~ 219 (293)
.++... |++++|...+++..+. -+-+...+..+..+|...|++++|+..|++. ....+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 9999999999998862 2345677888999999999999999999887 2226677888888
Q ss_pred HHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775 220 NACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR 273 (293)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 273 (293)
..+...|++++|...+++..+..|.++..+..+..++.+.|++++|.+.|++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999988653
No 32
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.77 E-value=6.9e-17 Score=125.71 Aligned_cols=243 Identities=8% Similarity=-0.085 Sum_probs=192.8
Q ss_pred HHcCCHHHHHHHHHHHHHccCC--CchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCH
Q 036775 17 AERGFCEEAVSVFQEMEKTKEA--EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 94 (293)
Q Consensus 17 ~~~~~~~~a~~~~~~m~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 94 (293)
...|++++|++.|+++.+.... +.+...+..+...+...|++++|...++.+.+ ..+.+..++..+...|...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHccCH
Confidence 3468899999999999885311 22467888889999999999999999999988 3456788899999999999999
Q ss_pred HHHHHHHHHhhh--C-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775 95 GIAIQVFNMLAY--K-DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171 (293)
Q Consensus 95 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 171 (293)
++|.+.|++..+ | +..+|..+..++...|++++|...|+++.+.. |+.......+..+...|++++|...++...
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999886 3 67789999999999999999999999998753 444444455556677799999999998887
Q ss_pred hhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-----HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCc
Q 036775 172 TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-----WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS 245 (293)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 245 (293)
. ..+++...+. ++..+...++.++|...+++. ...|+ ...+..+...|...|++++|...+++..+..|.+
T Consensus 172 ~--~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 172 E--KSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp H--HSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred h--cCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 6 2344444444 777788888899999999887 43342 4678888888999999999999999999887766
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHH
Q 036775 246 VGTFALMSNTFAGADRWEDANKIR 269 (293)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~a~~~~ 269 (293)
...+ ..++...|++++|.+.+
T Consensus 249 ~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHH---HHHHHHHHHHHHC----
T ss_pred HHHH---HHHHHHHHHHHhhHHHH
Confidence 4444 55677788888888776
No 33
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.75 E-value=4.5e-16 Score=121.00 Aligned_cols=245 Identities=11% Similarity=-0.013 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc--hhHHHHH
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS--NLVGNAV 84 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 84 (293)
..+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+ ....++ ...+..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 344556667778888888888888887742 23344677777777888888888888887766 332222 2236777
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChh
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 161 (293)
...+...|++++|++.|++..+. +..+|..+...+...|++++|...|++..+... .+...+..+...+...++++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHH
Confidence 77777888888888888777642 455677777777777777777777777766522 24455555552333344777
Q ss_pred HHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC---hHHHHHHHHhC----CCCch------HhHHHHHHHHHHhcCCh
Q 036775 162 QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL---LEEAEAFIREM----PIEAE------WSVWGALLNACRIHRND 228 (293)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~----~~~~~------~~~~~~l~~~~~~~~~~ 228 (293)
+|...++.+.+. .+.+...+..+..++...|+ +++|...+++. ...|+ ...|..+...|...|++
T Consensus 160 ~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 160 KADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 777777777652 22334556666666666666 65666666555 11232 13455566666677777
Q ss_pred hhchHHHHHHHhhcCCchhhHHHHHHHHh
Q 036775 229 EMFDPIRQELVNKKGVSVGTFALMSNTFA 257 (293)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 257 (293)
+.|...+++..+..|.++.....+.....
T Consensus 238 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 238 VKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 77777777777766666666555544433
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.75 E-value=1.4e-15 Score=118.21 Aligned_cols=233 Identities=8% Similarity=-0.005 Sum_probs=188.2
Q ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh--CCccc----HHHHH
Q 036775 43 ATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDMIS----WSTVI 116 (293)
Q Consensus 43 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~----~~~li 116 (293)
..+......+...|++++|...++.+.+ ..|.+...+..+..+|...|++++|++.+++..+ ++... |..+.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEA--KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHH--TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455566778899999999999999987 4455666889999999999999999999999886 23333 88999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCCh
Q 036775 117 SGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLL 196 (293)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 196 (293)
..+...|++++|...|++..+.... +..++..+...+...|++++|...+++..+ ..+.+...+..+...+...+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999886443 667899999999999999999999999986 2344567777787344455699
Q ss_pred HHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCC---hhhchHHHHHHHhhc---CCc-----hhhHHHHHHHHhcCCCHH
Q 036775 197 EEAEAFIREM-PIEAE-WSVWGALLNACRIHRN---DEMFDPIRQELVNKK---GVS-----VGTFALMSNTFAGADRWE 263 (293)
Q Consensus 197 ~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---~~~-----~~~~~~li~~~~~~g~~~ 263 (293)
++|...|++. ...|+ ...+..+...+...|+ .+.|...+++..+.. +.. ..+|..+...|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999998 44444 5567777778888888 888999998888754 221 257888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCc
Q 036775 264 DANKIRDEIRRMGLKKKTG 282 (293)
Q Consensus 264 ~a~~~~~~m~~~~~~p~~~ 282 (293)
+|.+.|++..+. .|+..
T Consensus 239 ~A~~~~~~al~~--~p~~~ 255 (272)
T 3u4t_A 239 KADAAWKNILAL--DPTNK 255 (272)
T ss_dssp HHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHhc--CccHH
Confidence 999999998873 45544
No 35
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.74 E-value=5.4e-16 Score=119.21 Aligned_cols=205 Identities=8% Similarity=-0.096 Sum_probs=163.4
Q ss_pred HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHH
Q 036775 42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISG 118 (293)
Q Consensus 42 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~ 118 (293)
...+..+...+...|++++|...++.+.+ ..+.+..++..+...|...|++++|.+.|+++.+. +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE--IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 46677777888888999999998888877 34556777888888899999999999999887653 55678888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChH
Q 036775 119 LAMNGCGRQALQLFSLMIINGVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLE 197 (293)
Q Consensus 119 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 197 (293)
+...|++++|.+.|+++.+.+..| +...+..+...+...|++++|...++++.+. .+.+...+..+...|...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHH
Confidence 899999999999999887733344 4567788888888999999999999988862 2345677888889999999999
Q ss_pred HHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHH
Q 036775 198 EAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFA 250 (293)
Q Consensus 198 ~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 250 (293)
+|...+++. ...| +...+..+...+...|+.+.|...++++.+..|.++....
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999887 3333 4556777778888999999999999999888877766544
No 36
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.74 E-value=5.3e-16 Score=116.89 Aligned_cols=194 Identities=8% Similarity=-0.025 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh
Q 036775 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155 (293)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 155 (293)
..+..+...+...|++++|.+.|+++.+. +...|..+...+...|++++|.+.++++.+... .+..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHH
Confidence 34444444555555555555555544431 233444455555555555555555555544322 13444555555555
Q ss_pred cC-CChhHHHHHHHHhhhhcCCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhc
Q 036775 156 HG-GLVDQGLILFKAMSTVYEIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMF 231 (293)
Q Consensus 156 ~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a 231 (293)
.. |++++|...++.+.+ .+..| +...+..+..++...|++++|...++++ ...| +...+..+...+...|+++.|
T Consensus 88 ~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence 55 555555555555553 21222 2344555555555555555555555554 2222 234455555555566666666
Q ss_pred hHHHHHHHhhcC-CchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 232 DPIRQELVNKKG-VSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 232 ~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
...++...+..| .+...+..+...+...|+.++|..+++.+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666665555555 5555555555556666666666666665544
No 37
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.74 E-value=2.8e-16 Score=129.11 Aligned_cols=272 Identities=12% Similarity=0.034 Sum_probs=211.6
Q ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch--HHHHHHHHHHhcccCcchHHHHHHHHHHhh---cCCCC-
Q 036775 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN--EATLVNVLSACSSISALSFGQYVHSYISTR---YDLSV- 76 (293)
Q Consensus 3 ~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~- 76 (293)
++....+......+...|++++|+..|++..+..+..|. ...+..+...+...|++++|...+++.... .+.+|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 456667778888999999999999999999886422222 356778888899999999999999987652 12222
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----C----cccHHHHHHHHHhcCC--------------------HHH
Q 036775 77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-----D----MISWSTVISGLAMNGC--------------------GRQ 127 (293)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~--------------------~~~ 127 (293)
...++..+...|...|++++|...+++..+. + ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 3456788899999999999999999988642 2 3478889999999999 999
Q ss_pred HHHHHHHHHhC----CCCC-cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc----hhHHHHHHHHHHhcCChHH
Q 036775 128 ALQLFSLMIIN----GVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----TQHYACVVDMYGRAGLLEE 198 (293)
Q Consensus 128 a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 198 (293)
|...+++.... +..| ...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999887542 2122 2357888888899999999999999988753221122 2378889999999999999
Q ss_pred HHHHHHhC-------CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCC------chhhHHHHHHHHhcCCCHHH
Q 036775 199 AEAFIREM-------PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV------SVGTFALMSNTFAGADRWED 264 (293)
Q Consensus 199 a~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 264 (293)
|...+++. +..+ ...++..+...|...|+++.|...+++..+..+. ...++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999887 1111 1446778888899999999999999988775421 25678899999999999999
Q ss_pred HHHHHHHHHH
Q 036775 265 ANKIRDEIRR 274 (293)
Q Consensus 265 a~~~~~~m~~ 274 (293)
|.+.+++..+
T Consensus 326 A~~~~~~al~ 335 (406)
T 3sf4_A 326 AMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 38
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.74 E-value=1e-15 Score=115.33 Aligned_cols=207 Identities=10% Similarity=-0.023 Sum_probs=103.1
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++.+.+ ..+.+..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l 82 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALS--IKPDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChHHHHHH
Confidence 45555566666666666666666666655532 23344555555555555555555555555544 122333444444
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC-cHhHHHHHHHHHhcCCChhH
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN-GCGRQALQLFSLMIINGVFP-DDVTFIALISACSHGGLVDQ 162 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~ 162 (293)
...+ ... |++++|...++++.+.+..| +...+..+..++...|++++
T Consensus 83 ~~~~-------------------------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 83 GWFL-------------------------------CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHH-------------------------------HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHH-------------------------------HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 4444 444 55555555555444421112 13444455555555555555
Q ss_pred HHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCC--chHhHHHHHHHHHHhcCChhhchHHHHHHH
Q 036775 163 GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIE--AEWSVWGALLNACRIHRNDEMFDPIRQELV 239 (293)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (293)
|...++++.+. .+.+...+..+...|...|++++|...+++. ... .+...+..+...+...|+.+.+..+++.+.
T Consensus 132 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 132 AEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 55555555431 1223444555555555555555555555554 111 233334444444555555666655555555
Q ss_pred hhcCCchhh
Q 036775 240 NKKGVSVGT 248 (293)
Q Consensus 240 ~~~~~~~~~ 248 (293)
+..|.++..
T Consensus 210 ~~~p~~~~~ 218 (225)
T 2vq2_A 210 ANFPYSEEL 218 (225)
T ss_dssp HHCTTCHHH
T ss_pred HhCCCCHHH
Confidence 555544443
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.74 E-value=2e-15 Score=115.99 Aligned_cols=196 Identities=7% Similarity=-0.054 Sum_probs=163.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 036775 78 NLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154 (293)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 154 (293)
...+..+...+...|++++|.+.|+++.+. +..++..+...+...|++++|.+.|+++.+.... +...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 566788888899999999999999988753 5567888888999999999999999998876433 677888888889
Q ss_pred hcCCChhHHHHHHHHhhhhcCCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhc
Q 036775 155 SHGGLVDQGLILFKAMSTVYEIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMF 231 (293)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a 231 (293)
...|++++|..+++++.+ .+..| +...+..+...|...|++++|...+++. ...| +...+..+...+...|+++.|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999875 33344 4567888888999999999999999887 3233 466788888889999999999
Q ss_pred hHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775 232 DPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM 275 (293)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 275 (293)
...++...+..|.+...+..+...+...|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999998888888888999999999999999999999988774
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=8.4e-16 Score=124.91 Aligned_cols=246 Identities=8% Similarity=-0.021 Sum_probs=184.9
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCc-chHHHHHHHHHHhhcCCCCchhHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA-LSFGQYVHSYISTRYDLSVSNLVGNA 83 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~ 83 (293)
+...|+.+...+.+.|++++|++.|++..+.. +-+...|..+..++...|+ +++|...++++.+ ..+.+..+|..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~--l~P~~~~a~~~ 171 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH--HCCCCHHHHHH
Confidence 35667778888888888999999998888752 3446677888888888886 8889888888877 45557778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhc-CCC
Q 036775 84 VINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH-GGL 159 (293)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~ 159 (293)
+..++...|++++|+..|+++.+. +..+|..+..++.+.|++++|+..|+++.+.... +...|+.+..++.+ .|.
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCc
Confidence 888888888888888888888753 5567888888888888888888888888876554 67788888888887 555
Q ss_pred hhHH-----HHHHHHhhhhcCCCcchhHHHHHHHHHHhcC--ChHHHHHHHHhCCCCch-HhHHHHHHHHHHhcC-----
Q 036775 160 VDQG-----LILFKAMSTVYEIVPQTQHYACVVDMYGRAG--LLEEAEAFIREMPIEAE-WSVWGALLNACRIHR----- 226 (293)
Q Consensus 160 ~~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~~----- 226 (293)
.++| +..+++..+. -+-+...|..+..++...| ++++|++.++++...|+ ...+..+...|...|
T Consensus 251 ~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred chHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccc
Confidence 5777 4777777752 2335567888888888877 57888888877744443 446667777776653
Q ss_pred ----ChhhchHHHHHH-HhhcCCchhhHHHHHHHHh
Q 036775 227 ----NDEMFDPIRQEL-VNKKGVSVGTFALMSNTFA 257 (293)
Q Consensus 227 ----~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~ 257 (293)
..++|..+++++ .+.+|.....|..+...+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 247888888888 6777777777777666554
No 41
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.73 E-value=3.6e-16 Score=119.33 Aligned_cols=207 Identities=8% Similarity=-0.010 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHH
Q 036775 42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISG 118 (293)
Q Consensus 42 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~ 118 (293)
...|..+...+...|++++|...++.+.+ ..+.+...+..+...+...|++++|.+.|+++.+. +..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIE--ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34455555556666666666666666655 33444555566666666666666666666665532 34455566666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHH
Q 036775 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE 198 (293)
Q Consensus 119 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 198 (293)
+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666655432 24555666666666666666666666666642 22344556666666666666666
Q ss_pred HHHHHHhC-CCC-chHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHH
Q 036775 199 AEAFIREM-PIE-AEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMS 253 (293)
Q Consensus 199 a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 253 (293)
|...+++. ... .+..++..+...+...|+++.|...+++..+..|.+...+..+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 66666665 212 23445566666666666666666666666666665555554443
No 42
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.72 E-value=6.8e-16 Score=127.24 Aligned_cols=268 Identities=10% Similarity=-0.035 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch--HHHHHHHHHHhcccCcchHHHHHHHHHHhhc---C-CCCchhH
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN--EATLVNVLSACSSISALSFGQYVHSYISTRY---D-LSVSNLV 80 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~ 80 (293)
..+..+...+...|++++|+..|+++.+..+..+. ...+..+...+...|++++|...+++..+.. + .+....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34555667889999999999999999886422221 1467788888999999999999999887621 1 2334566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhC---------CcccHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 036775 81 GNAVINMYVKCGDVGIAIQVFNMLAYK---------DMISWSTVISGLAMNGC-----------------GRQALQLFSL 134 (293)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~ 134 (293)
+..+...|...|++++|...+++..+. ...++..+...+...|+ +++|.+.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 788999999999999999999987642 23478888999999999 9999999988
Q ss_pred HHhC----CCCC-cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc----hhHHHHHHHHHHhcCChHHHHHHHHh
Q 036775 135 MIIN----GVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----TQHYACVVDMYGRAGLLEEAEAFIRE 205 (293)
Q Consensus 135 m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 205 (293)
..+. +..+ ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 7542 1111 2357888888999999999999999988763211112 23788899999999999999999988
Q ss_pred C-CCC-------chHhHHHHHHHHHHhcCChhhchHHHHHHHhhcC------CchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 036775 206 M-PIE-------AEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG------VSVGTFALMSNTFAGADRWEDANKIRDE 271 (293)
Q Consensus 206 ~-~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~ 271 (293)
. ... ....++..+...+...|+++.|...+++..+..+ ....++..+..+|...|++++|.+.+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 7 111 1245677888889999999999999998877532 1245788899999999999999999998
Q ss_pred HHH
Q 036775 272 IRR 274 (293)
Q Consensus 272 m~~ 274 (293)
..+
T Consensus 369 al~ 371 (411)
T 4a1s_A 369 HLQ 371 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.72 E-value=1.9e-14 Score=112.03 Aligned_cols=226 Identities=11% Similarity=-0.039 Sum_probs=174.3
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcc----cCcchHHHHHHHHHHhhcCCCCchh
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS----ISALSFGQYVHSYISTRYDLSVSNL 79 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 79 (293)
-+..++..+-..+...|++++|++.|++..+.+ +...+..+...+.. .+++++|...+++..+ .+ +..
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~ 75 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LN---YSN 75 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH-CC---CHH
Confidence 366778888888899999999999999887732 34566677777777 8899999999998877 33 667
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHhhhC-CcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCcHhHHHHH
Q 036775 80 VGNAVINMYVK----CGDVGIAIQVFNMLAYK-DMISWSTVISGLAM----NGCGRQALQLFSLMIINGVFPDDVTFIAL 150 (293)
Q Consensus 80 ~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 150 (293)
.+..+...|.. .+++++|++.|++..+. +..++..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77888888888 88999999999888765 55677888888888 888999999998888765 45566667
Q ss_pred HHHHhc----CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHh----cCChHHHHHHHHhC-CCCchHhHHHHHHHH
Q 036775 151 ISACSH----GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR----AGLLEEAEAFIREM-PIEAEWSVWGALLNA 221 (293)
Q Consensus 151 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~ 221 (293)
...+.. .+++++|...++...+ .+ +...+..+...|.. .+++++|...|++. ...| ...+..+...
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~ 227 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACD-LK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAM 227 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 777776 8888888888888876 22 45667778888888 88888888888877 2222 5556667777
Q ss_pred HHh----cCChhhchHHHHHHHhhcCCc
Q 036775 222 CRI----HRNDEMFDPIRQELVNKKGVS 245 (293)
Q Consensus 222 ~~~----~~~~~~a~~~~~~~~~~~~~~ 245 (293)
|.. .++.++|...+++..+.++++
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 777 788888888888887776644
No 44
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.72 E-value=6e-16 Score=123.56 Aligned_cols=271 Identities=13% Similarity=0.037 Sum_probs=208.1
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch--HHHHHHHHHHhcccCcchHHHHHHHHHHhh---cCCC-Cch
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN--EATLVNVLSACSSISALSFGQYVHSYISTR---YDLS-VSN 78 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~-~~~ 78 (293)
+...+......+...|++++|+..|+++.+..+..|. ...+..+...+...|++++|...++...+. .+.+ ...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3455666677889999999999999999886422222 357778888899999999999999987652 1222 235
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----C----cccHHHHHHHHHhcCC--------------------HHHHH
Q 036775 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYK-----D----MISWSTVISGLAMNGC--------------------GRQAL 129 (293)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~--------------------~~~a~ 129 (293)
.++..+...|...|++++|...+++..+. + ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 56788999999999999999999987642 2 2378888899999999 99999
Q ss_pred HHHHHHHhC----CCCC-cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc----hhHHHHHHHHHHhcCChHHHH
Q 036775 130 QLFSLMIIN----GVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----TQHYACVVDMYGRAGLLEEAE 200 (293)
Q Consensus 130 ~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~ 200 (293)
+.+++.... +..| ...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999886542 2111 2356788888899999999999999988752211111 237888999999999999999
Q ss_pred HHHHhC-CC------Cc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcC------CchhhHHHHHHHHhcCCCHHHHH
Q 036775 201 AFIREM-PI------EA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKG------VSVGTFALMSNTFAGADRWEDAN 266 (293)
Q Consensus 201 ~~~~~~-~~------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~ 266 (293)
..+++. .. .+ ...++..+...+...|+++.|...+++..+..+ ....++..+...+...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999887 11 11 144677788889999999999999998876532 12457888999999999999999
Q ss_pred HHHHHHHHc
Q 036775 267 KIRDEIRRM 275 (293)
Q Consensus 267 ~~~~~m~~~ 275 (293)
+.+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999988763
No 45
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=2e-17 Score=133.84 Aligned_cols=238 Identities=13% Similarity=0.079 Sum_probs=132.1
Q ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHH
Q 036775 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN 82 (293)
Q Consensus 3 ~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (293)
.||..+|..++.++...|++++|+..++..++ ..+++.+.+.++.++.+.|++.++.++++ .|+..+|+
T Consensus 58 a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark---~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~ 126 (449)
T 1b89_A 58 ADDPSSYMEVVQAANTSGNWEELVKYLQMARK---KARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQ 126 (449)
T ss_dssp ------------------------------------------------------CHHHHTTTTT--------CC------
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHH
Confidence 46888999999999999999999998887776 34667889999999999999999887764 36667999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhH
Q 036775 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ 162 (293)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 162 (293)
.++..|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.
T Consensus 127 ~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~l 195 (449)
T 1b89_A 127 QVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 195 (449)
T ss_dssp ----------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHH
Confidence 9999999999999999999988 58999999999999999999999998 278999999999999999999
Q ss_pred HHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775 163 GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVN 240 (293)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (293)
|......+. ..|+. ...++..|.+.|++++|..+++.. +..+ ....|+-|.-.|++. .++...+.++....
T Consensus 196 A~~~~l~L~----~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 196 AQMCGLHIV----VHADE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWS 268 (449)
T ss_dssp HHHTTTTTT----TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHST
T ss_pred HHHHHHHHH----hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 966554432 23433 557999999999999999999887 4443 455677666666544 33333333333332
Q ss_pred hc---C-----CchhhHHHHHHHHhcCCCHHHHHHHH
Q 036775 241 KK---G-----VSVGTFALMSNTFAGADRWEDANKIR 269 (293)
Q Consensus 241 ~~---~-----~~~~~~~~li~~~~~~g~~~~a~~~~ 269 (293)
.. + -+...|.-+...|...++++.|..++
T Consensus 269 ~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 269 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 22 2 35778999999999999999998864
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.71 E-value=8.8e-16 Score=124.79 Aligned_cols=237 Identities=8% Similarity=-0.027 Sum_probs=198.4
Q ss_pred HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCC-HHHHHHHHHHhhhC---CcccHHHHHH
Q 036775 42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD-VGIAIQVFNMLAYK---DMISWSTVIS 117 (293)
Q Consensus 42 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~---~~~~~~~li~ 117 (293)
...|..+..++...|++++|...++++.+ -.|.+..+|+.+..++...|+ +++|+..|+++.+. +..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 45677888889999999999999999988 456677889999999999997 99999999999863 5678999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHh-cCCh
Q 036775 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR-AGLL 196 (293)
Q Consensus 118 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 196 (293)
++...|++++|+..|+++.+.... +...|..+..++.+.|++++|+..++++.+. -+-+...|+.+..+|.. .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999987654 7889999999999999999999999999973 24467889999999999 6665
Q ss_pred HHH-----HHHHHhC-CCCc-hHhHHHHHHHHHHhcC--ChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCC-------
Q 036775 197 EEA-----EAFIREM-PIEA-EWSVWGALLNACRIHR--NDEMFDPIRQELVNKKGVSVGTFALMSNTFAGAD------- 260 (293)
Q Consensus 197 ~~a-----~~~~~~~-~~~~-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g------- 260 (293)
++| +..+++. ...| +...|+.+...+...| +.++|...++.+ +..+.++..+..+..+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 887 4677766 4455 4557888888888877 688999999888 667888899999999998874
Q ss_pred --CHHHHHHHHHHH-HHcCCCCCCcccee
Q 036775 261 --RWEDANKIRDEI-RRMGLKKKTGCSWI 286 (293)
Q Consensus 261 --~~~~a~~~~~~m-~~~~~~p~~~~~~~ 286 (293)
.+++|.++++++ .+ +.|....+|.
T Consensus 331 ~~~~~~A~~~~~~l~~~--~DP~r~~~w~ 357 (382)
T 2h6f_A 331 EDILNKALELCEILAKE--KDTIRKEYWR 357 (382)
T ss_dssp HHHHHHHHHHHHHHHHT--TCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hCchhHHHHH
Confidence 358999999997 44 5676666664
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.71 E-value=2e-14 Score=111.85 Aligned_cols=223 Identities=9% Similarity=-0.088 Sum_probs=191.5
Q ss_pred hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHhhhC-CcccHHHH
Q 036775 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK----CGDVGIAIQVFNMLAYK-DMISWSTV 115 (293)
Q Consensus 41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l 115 (293)
++..+..+...+...|++++|...+++..+ +.+...+..+...|.. .+++++|.+.|++..+. +...+..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 556777888889999999999999999887 3455678889999999 99999999999998875 66788889
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhc----CCChhHHHHHHHHhhhhcCCCcchhHHHHHH
Q 036775 116 ISGLAM----NGCGRQALQLFSLMIINGVFPDDVTFIALISACSH----GGLVDQGLILFKAMSTVYEIVPQTQHYACVV 187 (293)
Q Consensus 116 i~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 187 (293)
...|.. .+++++|...|++..+.+ +...+..+...+.. .+++++|...|++..+ .+ +...+..+.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg 153 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHH
Confidence 999999 999999999999999875 67788888888988 9999999999999987 33 566788888
Q ss_pred HHHHh----cCChHHHHHHHHhCCCCchHhHHHHHHHHHHh----cCChhhchHHHHHHHhhcCCchhhHHHHHHHHhc-
Q 036775 188 DMYGR----AGLLEEAEAFIREMPIEAEWSVWGALLNACRI----HRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG- 258 (293)
Q Consensus 188 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~- 258 (293)
..|.. .+++++|...|++.-...+...+..+...|.. .+++++|...+++..+..+ +..+..+..+|.+
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcC
Confidence 89998 99999999999988222355677778888888 9999999999999888765 5678888999998
Q ss_pred ---CCCHHHHHHHHHHHHHcC
Q 036775 259 ---ADRWEDANKIRDEIRRMG 276 (293)
Q Consensus 259 ---~g~~~~a~~~~~~m~~~~ 276 (293)
.+++++|.+.|++..+.|
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHT
T ss_pred CCcccCHHHHHHHHHHHHHcC
Confidence 999999999999987755
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.70 E-value=5.6e-16 Score=118.30 Aligned_cols=202 Identities=14% Similarity=0.054 Sum_probs=155.4
Q ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHH
Q 036775 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN 82 (293)
Q Consensus 3 ~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (293)
..+...|..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|...++.+.+ ..+.+..++.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~ 95 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALE--LDSSAATAYY 95 (243)
T ss_dssp ----------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCcchHHHH
Confidence 346677888888999999999999999999885 355678888899999999999999999999987 3455778889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC
Q 036775 83 AVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159 (293)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 159 (293)
.+...+...|++++|.+.++++.+. +...+..+...+...|++++|...++++.+... .+...+..+...+...|+
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCC
Confidence 9999999999999999999988753 566788899999999999999999999987643 367888999999999999
Q ss_pred hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch
Q 036775 160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE 211 (293)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~ 211 (293)
+++|...++.+.+. .+.+..++..+..+|...|++++|...+++. ...|+
T Consensus 175 ~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 175 LDEALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 99999999999863 3455778999999999999999999999988 33443
No 49
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=4.5e-15 Score=117.42 Aligned_cols=246 Identities=11% Similarity=0.055 Sum_probs=134.1
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc------CCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhc-----C
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK------EAEPNEATLVNVLSACSSISALSFGQYVHSYISTRY-----D 73 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~ 73 (293)
+..+|..+...+...|++++|+.+|+++.+.. ..+.....+..+...+...|++++|...++.+.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 56678888888888999999998888887630 023334566667777777777777777777766521 1
Q ss_pred -CCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 036775 74 -LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152 (293)
Q Consensus 74 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 152 (293)
.+....++..+...|...|++++|...|++..+. ...............+..+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------------------~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI------------------------REKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------------------------HHHHHCTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH------------------------HHHhcCCCChHHHHHHHHHHH
Confidence 1223445566666666666666666666554421 000000000112233444444
Q ss_pred HHhcCCChhHHHHHHHHhhhhc-----CCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC-CC---------Cc------
Q 036775 153 ACSHGGLVDQGLILFKAMSTVY-----EIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM-PI---------EA------ 210 (293)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~---------~~------ 210 (293)
.+...|++++|..+++++.+.. +..| ...++..+..+|...|++++|...+++. .. .+
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 4555555555555555444310 1011 2234455555555555555555555544 10 00
Q ss_pred -hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 211 -EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 211 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
....+..+...+...+.+..+...++......+....++..+..+|.+.|++++|.++|++..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1112223333356677778888888888777777788899999999999999999999988765
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=6.4e-15 Score=114.52 Aligned_cols=219 Identities=9% Similarity=-0.074 Sum_probs=175.8
Q ss_pred hcccCcchHHHHHHHHHHhhcCC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHH
Q 036775 52 CSSISALSFGQYVHSYISTRYDL--SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGR 126 (293)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~ 126 (293)
....+++++|...++.+.+.... +.+..++..+...+...|++++|...|+++.+. +..+|..+..++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 45668999999999999882111 235677889999999999999999999998753 5678999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 127 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
+|...|+++.+.... +..++..+...+.+.|++++|...++.+.+. .|+..........+...|++++|...+++.
T Consensus 95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999886433 6788999999999999999999999999863 344444444555667789999999999776
Q ss_pred -C-CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcC----CchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775 207 -P-IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG----VSVGTFALMSNTFAGADRWEDANKIRDEIRRM 275 (293)
Q Consensus 207 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 275 (293)
. ..++...+ .+...+...++.+.|...++...+..+ .+..++..+..++.+.|++++|...|++..+.
T Consensus 171 ~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 171 FEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2 22333333 466667888888889998888776553 23678999999999999999999999998764
No 51
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=1.3e-13 Score=115.62 Aligned_cols=270 Identities=13% Similarity=-0.016 Sum_probs=189.8
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----c--CCCc-hHHHHHHHHHHhcccCcchHHHHHHHHHHhhc---C-
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKT----K--EAEP-NEATLVNVLSACSSISALSFGQYVHSYISTRY---D- 73 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~--~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~- 73 (293)
....||.|-..+...|++++|++.|++..+. . ...| ...+|+.+..++...|++++|...+++..+.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567999999999999999999999987542 1 0123 35688999999999999999999998876521 1
Q ss_pred --CCCchhHHHHHHHHHHHc--CCHHHHHHHHHHhhh--C-CcccHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCCc
Q 036775 74 --LSVSNLVGNAVINMYVKC--GDVGIAIQVFNMLAY--K-DMISWSTVISG---LAMNGCGRQALQLFSLMIINGVFPD 143 (293)
Q Consensus 74 --~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g~~p~ 143 (293)
......++..+..++.+. +++++|++.|++..+ | +...+..+..+ +...++.++|++.+++..+.... +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-N 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-C
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-c
Confidence 112344566666566654 469999999999875 3 34445555444 44567888999999888775433 4
Q ss_pred HhHHHHHHHHHh----cCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHH
Q 036775 144 DVTFIALISACS----HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGA 217 (293)
Q Consensus 144 ~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~ 217 (293)
..++..+...+. ..++.++|.+++++... ..+.+..++..+...|...|++++|...+++. ...|+ ...+..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALE--KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 555555544443 45678899999998876 23455677888999999999999999999887 44444 345555
Q ss_pred HHHHHHh-------------------cCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 036775 218 LLNACRI-------------------HRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGL 277 (293)
Q Consensus 218 l~~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 277 (293)
+...|.. .+..+.|...+++..+..|.+..++..+...+...|++++|.+.|++..+...
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 5444422 12356677777777777788888888888888888888888888888776443
No 52
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.65 E-value=4.2e-13 Score=106.34 Aligned_cols=235 Identities=6% Similarity=-0.038 Sum_probs=181.3
Q ss_pred chHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHccCCCchHHHHHHHHHHhc-------ccCcc-------hHHH
Q 036775 5 DVVSWTTMIGGYAER----GFC----EEAVSVFQEMEKTKEAEPNEATLVNVLSACS-------SISAL-------SFGQ 62 (293)
Q Consensus 5 ~~~~y~~li~~~~~~----~~~----~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~ 62 (293)
+...|...+....+. ++. ++|..+|++.... .+.++..|..+...+. +.|++ ++|.
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 456677777765554 233 6888999999886 3556677777777665 34776 8999
Q ss_pred HHHHHHHhhcCCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---Ccc-cHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036775 63 YVHSYISTRYDLSV-SNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMI-SWSTVISGLAMNGCGRQALQLFSLMII 137 (293)
Q Consensus 63 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~ 137 (293)
.++++..+ .+.| +...|..++..+.+.|++++|.++|++..+. +.. +|..++..+.+.|++++|..+|++..+
T Consensus 85 ~~~~rAl~--~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 162 (308)
T 2ond_A 85 NIYERAIS--TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162 (308)
T ss_dssp HHHHHHHT--TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred HHHHHHHH--HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999876 3344 5568899999999999999999999998863 333 799999999999999999999999987
Q ss_pred CCCCCcHhHHHHHHHHH-hcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCch-
Q 036775 138 NGVFPDDVTFIALISAC-SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-P---IEAE- 211 (293)
Q Consensus 138 ~g~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~---~~~~- 211 (293)
.+. ++...|....... ...|+.++|..+|+...+. .+.+...|..++..+.+.|++++|..+|++. . ..|+
T Consensus 163 ~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~ 239 (308)
T 2ond_A 163 DAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp STT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred cCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence 643 3445554443332 2379999999999999863 2346678888999999999999999999988 2 3543
Q ss_pred -HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCch
Q 036775 212 -WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSV 246 (293)
Q Consensus 212 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 246 (293)
...|..++......|+.+.|..+++++.+..|.+.
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 45788888888899999999999999988877544
No 53
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.65 E-value=1.9e-12 Score=109.31 Aligned_cols=254 Identities=8% Similarity=-0.081 Sum_probs=164.7
Q ss_pred chHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcc----cCcchHHHHHHHHHHhhcCCCC
Q 036775 5 DVVSWTTMIGGYAE----RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS----ISALSFGQYVHSYISTRYDLSV 76 (293)
Q Consensus 5 ~~~~y~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 76 (293)
|...+..+-..|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+.|+...+ .+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~--- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL-KG--- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---
Confidence 55566666667776 778888888888877653 34455556666666 7778888888887766 32
Q ss_pred chhHHHHHHHHHHH----cCCHHHHHHHHHHhhhC-CcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCcHhHH
Q 036775 77 SNLVGNAVINMYVK----CGDVGIAIQVFNMLAYK-DMISWSTVISGLAM----NGCGRQALQLFSLMIINGVFPDDVTF 147 (293)
Q Consensus 77 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~ 147 (293)
+...+..|...|.. .+++++|.++|++..+. +...+..+...|.. .++.++|.+.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45556667777777 67788888888777655 45566667777766 667778888877777654 45566
Q ss_pred HHHHHHHhc----CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHh----cCChHHHHHHHHhCCCCchHhHHHHHH
Q 036775 148 IALISACSH----GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR----AGLLEEAEAFIREMPIEAEWSVWGALL 219 (293)
Q Consensus 148 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~l~ 219 (293)
..+...|.. .++.++|.+.|+...+ .+ +...+..+...|.. .+++++|..+|++.-...+...+..+.
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 262 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSAT-SG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666666665 6777777777777765 22 34456666666665 667777777777662223344444555
Q ss_pred HHHHh----cCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcC-----CCHHHHHHHHHHHHHc
Q 036775 220 NACRI----HRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGA-----DRWEDANKIRDEIRRM 275 (293)
Q Consensus 220 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~ 275 (293)
..|.. .++.++|...+++..+.+ ++..+..|...|... +++++|.++|++..+.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~ 325 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQG--NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ 325 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc
Confidence 55555 666777777776665543 334555566666555 6667777666665554
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.64 E-value=1.4e-14 Score=105.92 Aligned_cols=171 Identities=9% Similarity=0.000 Sum_probs=114.7
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHH
Q 036775 109 MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188 (293)
Q Consensus 109 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (293)
..+|..+...+...|++++|++.|++..+..+. +..++..+..++.+.|++++|...++.... ..+.+...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 345666666666666666666666666655332 456666666667777777777777766664 22334455666666
Q ss_pred HHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHH
Q 036775 189 MYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDAN 266 (293)
Q Consensus 189 ~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 266 (293)
.+...++++.|...+++. ...| +...+..+...+...|++++|...+++..+..|.++.+|..+..+|.+.|++++|.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 677777777777777666 2223 34456666777777788888888888888878888888888888888888888888
Q ss_pred HHHHHHHHcCCCCCCccc
Q 036775 267 KIRDEIRRMGLKKKTGCS 284 (293)
Q Consensus 267 ~~~~~m~~~~~~p~~~~~ 284 (293)
+.|++..+ +.|+...+
T Consensus 162 ~~~~~al~--~~p~~a~~ 177 (184)
T 3vtx_A 162 KYFKKALE--KEEKKAKY 177 (184)
T ss_dssp HHHHHHHH--TTHHHHHH
T ss_pred HHHHHHHh--CCccCHHH
Confidence 88887765 34444333
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.63 E-value=5e-15 Score=124.36 Aligned_cols=208 Identities=8% Similarity=-0.104 Sum_probs=178.3
Q ss_pred chHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCH-HHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHH
Q 036775 58 LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV-GIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFS 133 (293)
Q Consensus 58 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~ 133 (293)
++.+...++.... ..+.+...+..+...+...|++ ++|++.|++..+. +..+|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555556665443 3445778889999999999999 9999999998753 46689999999999999999999999
Q ss_pred HHHhCCCCCcHhHHHHHHHHHhcC---------CChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc--------CCh
Q 036775 134 LMIINGVFPDDVTFIALISACSHG---------GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA--------GLL 196 (293)
Q Consensus 134 ~m~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~ 196 (293)
+..+.. |+...+..+...+... |++++|...+++..+. .+.+...|..+..+|... |++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 998864 6678899999999999 9999999999999873 244577899999999998 999
Q ss_pred HHHHHHHHhC-CCCc----hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 036775 197 EEAEAFIREM-PIEA----EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDE 271 (293)
Q Consensus 197 ~~a~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 271 (293)
++|+..|++. ...| +...|..+..+|...|++++|...+++..+..|.+...+..+..++...|++++|.+.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999998 4455 6678999999999999999999999999999999999999999999999999999876543
No 56
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.61 E-value=5.1e-12 Score=106.66 Aligned_cols=257 Identities=9% Similarity=-0.020 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcc----cCcchHHHHHHHHHHhhcCCCCc
Q 036775 6 VVSWTTMIGGYAE----RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS----ISALSFGQYVHSYISTRYDLSVS 77 (293)
Q Consensus 6 ~~~y~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 77 (293)
...+..|-..|.. .+++++|++.|++....| ++..+..+...+.. .+++++|...++...+ .+ +
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~ 146 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE-QG---R 146 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---C
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---C
Confidence 3445555555555 566666666666665532 23333444444444 4566666666666554 22 3
Q ss_pred hhHHHHHHHHHHH----cCCHHHHHHHHHHhhhC-CcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCcHhHHH
Q 036775 78 NLVGNAVINMYVK----CGDVGIAIQVFNMLAYK-DMISWSTVISGLAM----NGCGRQALQLFSLMIINGVFPDDVTFI 148 (293)
Q Consensus 78 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~ 148 (293)
...+..|...|.. .++.++|.++|++..+. +...+..+...|.. .++.++|.+.|++..+.| +...+.
T Consensus 147 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 223 (490)
T 2xm6_A 147 DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQL 223 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444555555554 45566666666555443 34444555555554 455555555555554432 223333
Q ss_pred HHHHHHhc----CCChhHHHHHHHHhhhhcCC---------------------------------CcchhHHHHHHHHHH
Q 036775 149 ALISACSH----GGLVDQGLILFKAMSTVYEI---------------------------------VPQTQHYACVVDMYG 191 (293)
Q Consensus 149 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~ 191 (293)
.+...+.. .++.++|..+|+...+ .+. ..+...+..+...|.
T Consensus 224 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~ 302 (490)
T 2xm6_A 224 HLADMYYFGIGVTQDYTQSRVLFSQSAE-QGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYD 302 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333332 3444444444444443 110 012233344444444
Q ss_pred hc-----CChHHHHHHHHhCCCCchHhHHHHHHHHHHhcC---ChhhchHHHHHHHhhcCCchhhHHHHHHHHhc----C
Q 036775 192 RA-----GLLEEAEAFIREMPIEAEWSVWGALLNACRIHR---NDEMFDPIRQELVNKKGVSVGTFALMSNTFAG----A 259 (293)
Q Consensus 192 ~~-----g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 259 (293)
.. +++++|..+|++.-...+...+..+...|...| +.++|...+++..+. .++..+..|...|.. .
T Consensus 303 ~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~ 380 (490)
T 2xm6_A 303 KGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVK 380 (490)
T ss_dssp HCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred cCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCC
Confidence 44 455555555544411122233344444444333 445555555555444 234455556666655 5
Q ss_pred CCHHHHHHHHHHHHHcC
Q 036775 260 DRWEDANKIRDEIRRMG 276 (293)
Q Consensus 260 g~~~~a~~~~~~m~~~~ 276 (293)
+++++|.++|++..+.|
T Consensus 381 ~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 381 KDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 66666666666655543
No 57
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.60 E-value=2.5e-13 Score=110.96 Aligned_cols=226 Identities=8% Similarity=-0.068 Sum_probs=172.2
Q ss_pred HHHHhcccCcchHHHHHHHHHHhhcCCCC----chhHHHHHHHHHHHcCCHHHHHHHHHHhhhC----------CcccHH
Q 036775 48 VLSACSSISALSFGQYVHSYISTRYDLSV----SNLVGNAVINMYVKCGDVGIAIQVFNMLAYK----------DMISWS 113 (293)
Q Consensus 48 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~ 113 (293)
....+...|++++|...++...+.....+ ...++..+...|...|++++|...+++..+- ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44557889999999999999977322112 3456888999999999999999999988642 124788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhc---CC-CcchhHHH
Q 036775 114 TVISGLAMNGCGRQALQLFSLMIIN----GVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVY---EI-VPQTQHYA 184 (293)
Q Consensus 114 ~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~ 184 (293)
.+..+|...|++++|.+.|++..+. +..+ ...++..+...|...|++++|...+++..+.. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999988753 1111 12478888999999999999999999887521 22 33456788
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CC-----Cch-HhHHHHHHHHHHhcCC---hhhchHHHHHHHhhcCCchhhHHHHHH
Q 036775 185 CVVDMYGRAGLLEEAEAFIREM-PI-----EAE-WSVWGALLNACRIHRN---DEMFDPIRQELVNKKGVSVGTFALMSN 254 (293)
Q Consensus 185 ~l~~~~~~~g~~~~a~~~~~~~-~~-----~~~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~li~ 254 (293)
.+..+|.+.|++++|...+++. .. .|. ...+..+...+...|+ .+.|..++++. ...+.....+..+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 9999999999999999999887 11 222 2235566666888888 66666666655 112334567889999
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q 036775 255 TFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 255 ~~~~~g~~~~a~~~~~~m~~ 274 (293)
.|...|++++|.+.+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998865
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=1.2e-12 Score=103.71 Aligned_cols=211 Identities=9% Similarity=-0.040 Sum_probs=170.5
Q ss_pred hHHHHHHHHHHhhcCCCCchhHHHHHHHHHHH-------cCCH-------HHHHHHHHHhhh---C-CcccHHHHHHHHH
Q 036775 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVK-------CGDV-------GIAIQVFNMLAY---K-DMISWSTVISGLA 120 (293)
Q Consensus 59 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~ 120 (293)
++|..+|+++.+ ..|.+...|..++..+.. .|++ ++|..+|++..+ | +...|..++..+.
T Consensus 33 ~~a~~~~~~al~--~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLL--VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 678889999887 456777888888877763 5886 999999999876 2 4457999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCc-Hh-HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHH-hcCChH
Q 036775 121 MNGCGRQALQLFSLMIINGVFPD-DV-TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYG-RAGLLE 197 (293)
Q Consensus 121 ~~~~~~~a~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~ 197 (293)
+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+ ..+++...|........ ..|+.+
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999985 443 33 799999999999999999999999986 22344555554443322 379999
Q ss_pred HHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhc--CC--chhhHHHHHHHHhcCCCHHHHHHHHHH
Q 036775 198 EAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKK--GV--SVGTFALMSNTFAGADRWEDANKIRDE 271 (293)
Q Consensus 198 ~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 271 (293)
+|..+|++. ...| +...|..++..+...|+.+.|..+|++..... +| ....|..++..+.+.|+.++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988 3333 45678888889999999999999999999863 43 456889999999999999999999999
Q ss_pred HHHc
Q 036775 272 IRRM 275 (293)
Q Consensus 272 m~~~ 275 (293)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8774
No 59
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=6.5e-12 Score=107.07 Aligned_cols=152 Identities=9% Similarity=0.023 Sum_probs=108.9
Q ss_pred cCCHH-------HHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc-h-hHHHHHHHHHHh
Q 036775 122 NGCGR-------QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-T-QHYACVVDMYGR 192 (293)
Q Consensus 122 ~~~~~-------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~ 192 (293)
.|+++ +|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+.+.+ ..|+ . ..|..++..+.+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~ 368 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARR 368 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHH
Confidence 56665 7777777776521222466777777777778888888888888775 2343 2 467777777777
Q ss_pred cCChHHHHHHHHhC-CCCch-HhHHHHHHHH-HHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHH
Q 036775 193 AGLLEEAEAFIREM-PIEAE-WSVWGALLNA-CRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIR 269 (293)
Q Consensus 193 ~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 269 (293)
.|++++|..+|++. ...|+ ...|...... +...|+.+.|..+|+...+..|.++..|..++..+.+.|+.++|..+|
T Consensus 369 ~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 369 AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 88888888888777 33332 2222222222 346889999999999998888888899999999999999999999999
Q ss_pred HHHHHcC
Q 036775 270 DEIRRMG 276 (293)
Q Consensus 270 ~~m~~~~ 276 (293)
++....+
T Consensus 449 ~~al~~~ 455 (530)
T 2ooe_A 449 ERVLTSG 455 (530)
T ss_dssp HHHHHSC
T ss_pred HHHHhcc
Confidence 9988753
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.58 E-value=5e-13 Score=97.52 Aligned_cols=163 Identities=12% Similarity=-0.010 Sum_probs=105.1
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
++..|..+-..|.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|...+..... ..+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHH
Confidence 45667777777777777777777777777642 33455666667777777777777777777665 334445555666
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChh
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 161 (293)
...+...++++.|...+++..+. +...+..+..++.+.|++++|++.|++..+.... +..+|..+..++.+.|+++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 66666677777777766665532 3445566666666666666666666666654332 4555666666666666666
Q ss_pred HHHHHHHHhhh
Q 036775 162 QGLILFKAMST 172 (293)
Q Consensus 162 ~a~~~~~~~~~ 172 (293)
+|.+.|++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66666666654
No 61
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.57 E-value=2.7e-13 Score=113.70 Aligned_cols=263 Identities=10% Similarity=-0.070 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHHccCCCch-HHHHHHHHHH---hcccCcchHHHHHHHHHHhhcCCCCchhH
Q 036775 7 VSWTTMIGGYAER--GFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSA---CSSISALSFGQYVHSYISTRYDLSVSNLV 80 (293)
Q Consensus 7 ~~y~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (293)
.+|+.+-.++... +++++|++.|++..+. .|+ +..+..+..+ +...++.++|.+.+++..+ -.|.+..+
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~--l~p~~~~~ 211 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR--LNPDNQYL 211 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH--HCSSCHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh--cCCcchHH
Confidence 4555555555544 5799999999999885 344 3444444433 4456777889999988877 33455666
Q ss_pred HHHHHHHHHHc----CCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHH
Q 036775 81 GNAVINMYVKC----GDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153 (293)
Q Consensus 81 ~~~l~~~~~~~----~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 153 (293)
+..+...+... |++++|.+.+++..+. +..++..+...+...|++++|...|++..+..+. +..++..+..+
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 290 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Confidence 66666555554 5788999999987753 5567888999999999999999999999876433 45566666555
Q ss_pred HhcC-------------------CChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHh
Q 036775 154 CSHG-------------------GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS 213 (293)
Q Consensus 154 ~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~ 213 (293)
|... +..+.|...++...+. .+.+...+..+...|...|++++|+..|++. ...|+..
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~ 368 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence 4321 2356777788877752 2345567888999999999999999999987 3333322
Q ss_pred ----HHHHHHHH-HHhcCChhhchHHHHHHHh------------------------hcCCchhhHHHHHHHHhcCCCHHH
Q 036775 214 ----VWGALLNA-CRIHRNDEMFDPIRQELVN------------------------KKGVSVGTFALMSNTFAGADRWED 264 (293)
Q Consensus 214 ----~~~~l~~~-~~~~~~~~~a~~~~~~~~~------------------------~~~~~~~~~~~li~~~~~~g~~~~ 264 (293)
.+..+... ....|+.++|...+++..+ ..|.++.+|..|..+|...|++++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~ 448 (472)
T 4g1t_A 369 AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQ 448 (472)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 22222222 3567888888887776553 346678899999999999999999
Q ss_pred HHHHHHHHHHcCC
Q 036775 265 ANKIRDEIRRMGL 277 (293)
Q Consensus 265 a~~~~~~m~~~~~ 277 (293)
|.+.|++..+.|-
T Consensus 449 A~~~y~kALe~~~ 461 (472)
T 4g1t_A 449 ADEDSERGLESGS 461 (472)
T ss_dssp -------------
T ss_pred HHHHHHHHHhcCC
Confidence 9999999887543
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=2.5e-12 Score=105.04 Aligned_cols=230 Identities=8% Similarity=-0.054 Sum_probs=179.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccC---CCc-hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC-----chhHHH
Q 036775 12 MIGGYAERGFCEEAVSVFQEMEKTKE---AEP-NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSV-----SNLVGN 82 (293)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~---~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ 82 (293)
....+...|++++|+..|++..+.-. .++ ...++..+..++...|+++.|...+.+..+...-.+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44567788999999999999876411 122 346788888899999999999999999887322222 235678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhC-----C----cccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCcHhHHH
Q 036775 83 AVINMYVKCGDVGIAIQVFNMLAYK-----D----MISWSTVISGLAMNGCGRQALQLFSLMIIN----GV-FPDDVTFI 148 (293)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~ 148 (293)
.+...|...|++++|+..|++..+. + ..++..+..+|...|++++|...|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999988742 1 247888999999999999999999998762 33 33467888
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhhcC---CCcchhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCchHh-HHHHHHHH
Q 036775 149 ALISACSHGGLVDQGLILFKAMSTVYE---IVPQTQHYACVVDMYGRAGL---LEEAEAFIREMPIEAEWS-VWGALLNA 221 (293)
Q Consensus 149 ~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~l~~~ 221 (293)
.+...+.+.|++++|...+++..+... .+.....+..+...|...|+ +++|..++++.+..|+.. .+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999998875221 11122345678888888999 999999999996555544 67778888
Q ss_pred HHhcCChhhchHHHHHHHhh
Q 036775 222 CRIHRNDEMFDPIRQELVNK 241 (293)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~ 241 (293)
|...|+++.|...+++..+.
T Consensus 349 y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999887764
No 63
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.55 E-value=2.6e-11 Score=98.59 Aligned_cols=263 Identities=11% Similarity=-0.062 Sum_probs=188.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCchH----HHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc----hhHHH
Q 036775 11 TMIGGYAERGFCEEAVSVFQEMEKTKEAEPNE----ATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS----NLVGN 82 (293)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 82 (293)
.....+...|++++|...+++..... ...+. ..+..+...+...|+++.|...+++......-..+ ..++.
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34456678899999999999987753 11122 24556667788899999999999988762111122 22356
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhC-----C------cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--C--cHhHH
Q 036775 83 AVINMYVKCGDVGIAIQVFNMLAYK-----D------MISWSTVISGLAMNGCGRQALQLFSLMIINGVF--P--DDVTF 147 (293)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~~ 147 (293)
.+...+...|++++|...+++..+. + ...+..+...+...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 7888899999999999999887642 1 134566778899999999999999998754221 1 23567
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHH-----HHHHHHHhcCChHHHHHHHHhC-CCCch-----HhHHH
Q 036775 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA-----CVVDMYGRAGLLEEAEAFIREM-PIEAE-----WSVWG 216 (293)
Q Consensus 148 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~-~~~~~-----~~~~~ 216 (293)
..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++. ...|. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7788889999999999999998875322111111121 2334577999999999999988 22221 22456
Q ss_pred HHHHHHHhcCChhhchHHHHHHHhhcC-----Cc-hhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 217 ALLNACRIHRNDEMFDPIRQELVNKKG-----VS-VGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 217 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
.+...+...|++++|...++......+ ++ ..++..+..++...|+.++|...+++...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 677778999999999999988776431 12 23677788889999999999999988654
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.54 E-value=2.1e-13 Score=114.54 Aligned_cols=208 Identities=13% Similarity=0.000 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcc-hHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHH
Q 036775 22 CEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL-SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 100 (293)
Q Consensus 22 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 100 (293)
++++++.++..... .+.+...+..+..++...|++ ++|.+.+++..+ ..+.+...+..+..+|.+.|++++|.+.
T Consensus 84 ~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55666777766553 344678888899999999999 999999999988 3455678899999999999999999999
Q ss_pred HHHhhh--CCcccHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcC--------CChh
Q 036775 101 FNMLAY--KDMISWSTVISGLAMN---------GCGRQALQLFSLMIINGVFPDDVTFIALISACSHG--------GLVD 161 (293)
Q Consensus 101 ~~~~~~--~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------~~~~ 161 (293)
|++..+ |+...+..+..++... |++++|.+.|++..+.... +...|..+..++... |+++
T Consensus 160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999986 4556788888899999 9999999999999887543 678899999999888 9999
Q ss_pred HHHHHHHHhhhhcCCC---cchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHH
Q 036775 162 QGLILFKAMSTVYEIV---PQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQ 236 (293)
Q Consensus 162 ~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 236 (293)
+|...|++..+. . + .+...|..+..+|...|++++|...|++. ...|+ ...+..+...+...|+.++|...+.
T Consensus 239 ~A~~~~~~al~~-~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKV-D-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHH-C-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh-C-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999873 1 2 36788999999999999999999999998 44454 4467778888888888877776543
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=1.9e-13 Score=112.57 Aligned_cols=231 Identities=12% Similarity=-0.016 Sum_probs=180.9
Q ss_pred HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch----hHHHHHHHHHHHcCCHHHHHHHHHHhhhC---------C
Q 036775 42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN----LVGNAVINMYVKCGDVGIAIQVFNMLAYK---------D 108 (293)
Q Consensus 42 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~ 108 (293)
...+..+...+...|++++|...++.+.+ . .+.+. .++..+...|...|++++|...+++..+. .
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~-~-~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQ-A-GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHH-h-cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 34455566778899999999999999988 3 22232 46788999999999999999999987642 3
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCcHhHHHHHHHHHhcCCC-----------------hhHHHHH
Q 036775 109 MISWSTVISGLAMNGCGRQALQLFSLMIIN----GV-FPDDVTFIALISACSHGGL-----------------VDQGLIL 166 (293)
Q Consensus 109 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~ll~~~~~~~~-----------------~~~a~~~ 166 (293)
..++..+...+...|++++|...|++..+. +- .....++..+...+...|+ +++|...
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 457888999999999999999999987653 11 1234578888888999999 9999999
Q ss_pred HHHhhhhc---CCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc---h----HhHHHHHHHHHHhcCChhhchHH
Q 036775 167 FKAMSTVY---EIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA---E----WSVWGALLNACRIHRNDEMFDPI 234 (293)
Q Consensus 167 ~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~---~----~~~~~~l~~~~~~~~~~~~a~~~ 234 (293)
+++..+.. +..+ ...++..+...|...|++++|...+++. ...+ + ...+..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 88876421 1112 2357888999999999999999999887 1111 1 22677888889999999999999
Q ss_pred HHHHHhhcCC------chhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 235 RQELVNKKGV------SVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 235 ~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
+++..+..+. ...++..+...+...|++++|.+++++..+
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9988875532 256788999999999999999999998765
No 66
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.53 E-value=1.4e-11 Score=104.93 Aligned_cols=209 Identities=9% Similarity=-0.019 Sum_probs=163.0
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHHHHH-------cCCHH-------HHHHHHHHhhh---C-CcccHHHHHHHHHh
Q 036775 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVK-------CGDVG-------IAIQVFNMLAY---K-DMISWSTVISGLAM 121 (293)
Q Consensus 60 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~ 121 (293)
.+..+|++... ..|.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+
T Consensus 256 ~a~~~y~~al~--~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 256 RVMFAYEQCLL--VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 34445555555 345566777777777775 68887 99999999875 3 46689999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCc--HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHH-HHhcCChHH
Q 036775 122 NGCGRQALQLFSLMIINGVFPD--DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDM-YGRAGLLEE 198 (293)
Q Consensus 122 ~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 198 (293)
.|++++|..+|+++.+. .|+ ...|...+..+.+.|++++|.++|+...+. .+.+...|...... +...|+.++
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhH
Confidence 99999999999999985 443 357888888889999999999999999862 22233333333222 346899999
Q ss_pred HHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchh----hHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775 199 AEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVG----TFALMSNTFAGADRWEDANKIRDEI 272 (293)
Q Consensus 199 a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m 272 (293)
|..+|++. ...| +...|..++..+...|+.+.|..+|++.....+.++. .|...+......|+.+.+.++++++
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 3344 4678888999999999999999999999987654444 7888888888999999999999988
Q ss_pred HH
Q 036775 273 RR 274 (293)
Q Consensus 273 ~~ 274 (293)
.+
T Consensus 490 ~~ 491 (530)
T 2ooe_A 490 FT 491 (530)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 67
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=9.1e-13 Score=108.06 Aligned_cols=235 Identities=10% Similarity=-0.042 Sum_probs=183.1
Q ss_pred CCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc----hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC------
Q 036775 38 AEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS----NLVGNAVINMYVKCGDVGIAIQVFNMLAYK------ 107 (293)
Q Consensus 38 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------ 107 (293)
..+....+......+...|++++|...++.+.+ . .+.+ ..++..+...|...|++++|...+++..+.
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~-~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 82 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQ-V-GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 82 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh-c-CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Confidence 345556667777889999999999999999988 3 2223 356788999999999999999999887532
Q ss_pred ---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----C-CcHhHHHHHHHHHhcCCC--------------------
Q 036775 108 ---DMISWSTVISGLAMNGCGRQALQLFSLMIINGV----F-PDDVTFIALISACSHGGL-------------------- 159 (293)
Q Consensus 108 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~-p~~~~~~~ll~~~~~~~~-------------------- 159 (293)
...++..+...+...|++++|...+++..+... . ....++..+...+...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 245788889999999999999999998865311 1 114478888888999999
Q ss_pred hhHHHHHHHHhhhhc---CCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC----CCCch----HhHHHHHHHHHHhcCC
Q 036775 160 VDQGLILFKAMSTVY---EIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM----PIEAE----WSVWGALLNACRIHRN 227 (293)
Q Consensus 160 ~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~ 227 (293)
+++|...+++..+.. +..+ ...++..+...|...|++++|...+++. +..++ ...+..+...+...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 999999988876421 1112 2357888999999999999999999887 11111 2367778888999999
Q ss_pred hhhchHHHHHHHhhcCCc------hhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 228 DEMFDPIRQELVNKKGVS------VGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
++.|...+++..+..+.. ..++..+...+...|++++|.+.+++..+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 999999999887654322 56788999999999999999999998765
No 68
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.53 E-value=6.6e-13 Score=96.55 Aligned_cols=161 Identities=13% Similarity=-0.014 Sum_probs=103.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHH
Q 036775 112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYG 191 (293)
Q Consensus 112 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 191 (293)
|..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++.+.+. .+.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 34444555555555555555555544322 24455556666666666666666666666542 2334455666666666
Q ss_pred hcCChHHHHHHHHhC-CC-CchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHH
Q 036775 192 RAGLLEEAEAFIREM-PI-EAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIR 269 (293)
Q Consensus 192 ~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 269 (293)
..|++++|...+++. .. ..+...+..+...+...|+++.|...+++..+..|.++..+..+...+...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 667777777666665 11 2344556666666777777777777777777777777788888888888888888888888
Q ss_pred HHHHHc
Q 036775 270 DEIRRM 275 (293)
Q Consensus 270 ~~m~~~ 275 (293)
++..+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 877663
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=5.5e-13 Score=106.28 Aligned_cols=230 Identities=12% Similarity=-0.011 Sum_probs=178.0
Q ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc----hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---------Cc
Q 036775 43 ATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS----NLVGNAVINMYVKCGDVGIAIQVFNMLAYK---------DM 109 (293)
Q Consensus 43 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~ 109 (293)
..+......+...|++++|...++.+.+ . .+.+ ..++..+...|...|++++|.+.+++..+. ..
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~-~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQ-V-GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh-h-CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3445556668899999999999999988 3 2223 356788999999999999999999887532 24
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCc----HhHHHHHHHHHhcCCC--------------------hhHHH
Q 036775 110 ISWSTVISGLAMNGCGRQALQLFSLMIINGV-FPD----DVTFIALISACSHGGL--------------------VDQGL 164 (293)
Q Consensus 110 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~ 164 (293)
.++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 5788889999999999999999998765311 112 3478888888999999 99999
Q ss_pred HHHHHhhhhc---CCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC-CC------Cc-hHhHHHHHHHHHHhcCChhhch
Q 036775 165 ILFKAMSTVY---EIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM-PI------EA-EWSVWGALLNACRIHRNDEMFD 232 (293)
Q Consensus 165 ~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~------~~-~~~~~~~l~~~~~~~~~~~~a~ 232 (293)
..+++..... +..+ ...++..+...|...|++++|...+++. .. .+ ....+..+...+...|+++.|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9988875421 1112 2356788899999999999999999887 11 11 1236777888899999999999
Q ss_pred HHHHHHHhhcCCc------hhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 233 PIRQELVNKKGVS------VGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 233 ~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
..+++..+..+.. ..++..+...+...|++++|.+.+++..+
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999887654222 56788899999999999999999998765
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.50 E-value=7e-12 Score=94.71 Aligned_cols=203 Identities=7% Similarity=-0.050 Sum_probs=125.5
Q ss_pred chHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHH
Q 036775 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVI 116 (293)
Q Consensus 40 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li 116 (293)
.|+..+......+...|++++|...|+...+ ...+++...+..+..++...|++++|++.|++..+. +..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLK-LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 4556677777777777888888888887776 332256666666777777778888888777777654 334566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcH-------hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc---hhHHHHH
Q 036775 117 SGLAMNGCGRQALQLFSLMIINGVFPDD-------VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ---TQHYACV 186 (293)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 186 (293)
.++...|++++|...|++..+.... +. ..|..+...+...|++++|...|++..+ ..|+ ...+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 7777777777777777777664322 33 3466666666777777777777777764 1343 4566666
Q ss_pred HHHHHhcCCh--HHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHH
Q 036775 187 VDMYGRAGLL--EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSN 254 (293)
Q Consensus 187 ~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 254 (293)
..+|...|+. +++..+. ..+...|.... ....+.++.|...+++..+..|.++.+...+..
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 6666554432 2221111 11122222222 233455677777777777777766665555543
No 71
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.50 E-value=1.6e-11 Score=100.08 Aligned_cols=192 Identities=9% Similarity=-0.036 Sum_probs=86.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhC-----C-----cccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-cHh
Q 036775 81 GNAVINMYVKCGDVGIAIQVFNMLAYK-----D-----MISWSTVISGLAMNGCGRQALQLFSLMIIN----GVFP-DDV 145 (293)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~ 145 (293)
+..+...|...|++++|...+++..+- + ..+++.+..+|...|++++|.+.|++..+. +..+ ...
T Consensus 144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 223 (378)
T 3q15_A 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344444455555555554444443320 1 123444445555555555555555444321 1111 123
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhc---CCCcchhHHHHHHHHHHhcCChHHHHHHHHhC----CC--Cc-hHhHH
Q 036775 146 TFIALISACSHGGLVDQGLILFKAMSTVY---EIVPQTQHYACVVDMYGRAGLLEEAEAFIREM----PI--EA-EWSVW 215 (293)
Q Consensus 146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~--~~-~~~~~ 215 (293)
++..+..++...|++++|...+++..+.. +.+....++..+..+|.+.|++++|...+++. .. .| ....+
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 303 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44445555555555555555555554310 11222344555555555556655555555544 10 11 11223
Q ss_pred HHHHHHHHhcCC---hhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775 216 GALLNACRIHRN---DEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR 273 (293)
Q Consensus 216 ~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 273 (293)
..+...+...++ ...|..+++... ..+.....+..+...|...|++++|.+.|++..
T Consensus 304 ~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 304 LFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333333444444 344444443311 112223345566666666666666666666553
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.50 E-value=2.4e-12 Score=93.56 Aligned_cols=162 Identities=14% Similarity=0.070 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI 85 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 85 (293)
...|..+...+...|++++|++.|+++.+. .+.+...+..+...+...|++++|...++.+.+ ..+.+...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a 83 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLA--DAPDNVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHH
Confidence 445666777778888888888888877664 234566677777777777778777777777766 2344556666777
Q ss_pred HHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhH
Q 036775 86 NMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ 162 (293)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 162 (293)
..+...|++++|.+.++++.+. +...+..+..++...|++++|.+.++++.+... .+...+..+...+...|++++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777766542 344566666666666777777777766665432 245566666666666666666
Q ss_pred HHHHHHHhhh
Q 036775 163 GLILFKAMST 172 (293)
Q Consensus 163 a~~~~~~~~~ 172 (293)
|...++.+.+
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.49 E-value=6.6e-13 Score=116.18 Aligned_cols=162 Identities=14% Similarity=0.065 Sum_probs=100.5
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHH
Q 036775 77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153 (293)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 153 (293)
+...++.|...|.+.|++++|++.|++..+. +..+|+.+..+|.+.|++++|++.|++..+.... +...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4566777777777777777777777776642 3456666777777777777777777776654332 45566666666
Q ss_pred HhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhc
Q 036775 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMF 231 (293)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a 231 (293)
+.+.|++++|++.|++..+. -+-+...|+.+..+|...|++++|+..|++. ...|+ ...+..+...+...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 66777777777777666652 1223455666666666666666666666655 33332 33555555666666666666
Q ss_pred hHHHHHHHhh
Q 036775 232 DPIRQELVNK 241 (293)
Q Consensus 232 ~~~~~~~~~~ 241 (293)
...++++.+.
T Consensus 165 ~~~~~kal~l 174 (723)
T 4gyw_A 165 DERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666555543
No 74
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.48 E-value=2.5e-11 Score=110.03 Aligned_cols=233 Identities=11% Similarity=0.050 Sum_probs=142.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI 85 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 85 (293)
..+|..+..++...|++++|++.|.+. -|...|.-++.+|.+.|++++|.+.+....+ .. ++..+.+.++
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk-~~--~e~~Idt~La 1174 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARK-KA--RESYVETELI 1174 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hc--ccccccHHHH
Confidence 455666666677777777777666442 3445566666667777777777777766655 22 3333334466
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHH
Q 036775 86 NMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI 165 (293)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 165 (293)
.+|++.+++++...+. ..++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+
T Consensus 1175 faYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred HHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHH
Confidence 6666666666433332 2334455556666677777777777777663 266667777777777777777
Q ss_pred HHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCc
Q 036775 166 LFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS 245 (293)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 245 (293)
.+++.. +..+|..+..+|...|++..|......+ ..+...+..++..|...|.+++|..+++......+..
T Consensus 1243 aarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A 1243 GARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred HHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH
Confidence 666553 2356666666666677777666665543 2333445567777777777777777777776666666
Q ss_pred hhhHHHHHHHHhcC--CCHHHHHHHH
Q 036775 246 VGTFALMSNTFAGA--DRWEDANKIR 269 (293)
Q Consensus 246 ~~~~~~li~~~~~~--g~~~~a~~~~ 269 (293)
...|.-|...+++. ++..++.++|
T Consensus 1314 ~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1314 MGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666665555543 3344444444
No 75
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.47 E-value=5.7e-12 Score=97.92 Aligned_cols=234 Identities=11% Similarity=0.046 Sum_probs=112.5
Q ss_pred HHcCCHHHHHHHHHHHHHc-----c-CCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhc-----CC-CCchhHHHHH
Q 036775 17 AERGFCEEAVSVFQEMEKT-----K-EAEPNEATLVNVLSACSSISALSFGQYVHSYISTRY-----DL-SVSNLVGNAV 84 (293)
Q Consensus 17 ~~~~~~~~a~~~~~~m~~~-----~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~-~~~~~~~~~l 84 (293)
...|++++|+..|++.... + ..+....++..+...+...|++++|...++.+.+.. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666665442 0 012234456666666677777777777766665521 11 2233445556
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHH
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 164 (293)
...|...|++++|.+.|++..+. +++......+....++..+...+...|++++|.
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 147 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEI------------------------REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHH------------------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHH------------------------HHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666666554321 000000000112334444555555555555555
Q ss_pred HHHHHhhhhc-----CCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC-C---------CCch-HhHHHHHHHHHHhcCC
Q 036775 165 ILFKAMSTVY-----EIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM-P---------IEAE-WSVWGALLNACRIHRN 227 (293)
Q Consensus 165 ~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~---------~~~~-~~~~~~l~~~~~~~~~ 227 (293)
..+++..+.. +..| ...++..+..+|...|++++|...+++. . ..+. ...|..+...+...+.
T Consensus 148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (283)
T 3edt_B 148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK 227 (283)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc
Confidence 5555554310 0011 2334555555566666666666555544 0 1111 1122222222222222
Q ss_pred hhhchH------HHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 228 DEMFDP------IRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 228 ~~~a~~------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
...+.. .++......+....++..+..+|...|++++|.++|++..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 228 RRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222222 11111112233455778888888888888888888887654
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.47 E-value=8.7e-12 Score=101.67 Aligned_cols=228 Identities=9% Similarity=-0.001 Sum_probs=176.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCch----HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC-----chhHHHH
Q 036775 13 IGGYAERGFCEEAVSVFQEMEKTKEAEPN----EATLVNVLSACSSISALSFGQYVHSYISTRYDLSV-----SNLVGNA 83 (293)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 83 (293)
-..+...|++++|+..|++..+.....++ ..++..+..++...|+++.|...+.+..+...-.+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 34567889999999999998764211222 45677888889999999999999999877322212 2456788
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhC-----C----cccHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCcHhHHHH
Q 036775 84 VINMYVKCGDVGIAIQVFNMLAYK-----D----MISWSTVISGLAMNGCGRQALQLFSLMII-----NGVFPDDVTFIA 149 (293)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 149 (293)
+...|...|++++|.+.|++..+. + ..++..+..++...|++++|...|++..+ .... ...++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence 999999999999999999887642 2 34688899999999999999999999986 4332 4678888
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhhcCC---CcchhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCchHh-HHHHHHHHH
Q 036775 150 LISACSHGGLVDQGLILFKAMSTVYEI---VPQTQHYACVVDMYGRAGL---LEEAEAFIREMPIEAEWS-VWGALLNAC 222 (293)
Q Consensus 150 ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~l~~~~ 222 (293)
+...+.+.|++++|...+++..+...- +.....+..+...|...++ +.+|+..+++.+..|+.. .+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 999999999999999999998863222 1123456666677777888 999999999986555443 566777889
Q ss_pred HhcCChhhchHHHHHHHhh
Q 036775 223 RIHRNDEMFDPIRQELVNK 241 (293)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~ 241 (293)
...|+++.|...+++..+.
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999887653
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.46 E-value=5.5e-12 Score=110.39 Aligned_cols=163 Identities=13% Similarity=-0.069 Sum_probs=143.4
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
+..+|+.|-..|.+.|++++|++.|++..+.. +-+...|..+..++.+.|++++|...|++..+ -.+.+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 57789999999999999999999999998852 34477899999999999999999999999987 345567889999
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChh
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 161 (293)
..+|.+.|++++|++.|++..+. +..+|+.+..++...|++++|++.|++..+.... +...+..+..++...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 99999999999999999998753 5678999999999999999999999999886443 5788999999999999999
Q ss_pred HHHHHHHHhhh
Q 036775 162 QGLILFKAMST 172 (293)
Q Consensus 162 ~a~~~~~~~~~ 172 (293)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888765
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=7.4e-12 Score=94.57 Aligned_cols=194 Identities=10% Similarity=-0.013 Sum_probs=150.5
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHHhhh----CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHH
Q 036775 76 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAY----KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151 (293)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 151 (293)
.++..+......+...|++++|++.|++..+ ++...+..+..++...|++++|+..|++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567788899999999999999999998875 45667777899999999999999999999886543 667889999
Q ss_pred HHHhcCCChhHHHHHHHHhhhhcCCCcch-------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCch---HhHHHHHHH
Q 036775 152 SACSHGGLVDQGLILFKAMSTVYEIVPQT-------QHYACVVDMYGRAGLLEEAEAFIREM-PIEAE---WSVWGALLN 220 (293)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~---~~~~~~l~~ 220 (293)
.++...|++++|...+++..+.. +.+. ..|..+...+...|++++|+..|++. ...|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 99999999999999999998732 2334 45888888999999999999999988 66776 446777777
Q ss_pred HHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 036775 221 ACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT 281 (293)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 281 (293)
.|...| ...++.+....+.+...|..... ...+.+++|...+++..+ +.|+.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~--l~p~~ 213 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLASSNKEKYASEKA--KADAAFKKAVDYLGEAVT--LSPNR 213 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTTTCHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHH-----HHHHHHHHhcccCCHHHHHHHHH--HHHHHHHHHHHHHHHHhh--cCCCC
Confidence 775544 34455555555555555554433 345678999999998877 34544
No 79
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.43 E-value=5.1e-11 Score=108.04 Aligned_cols=237 Identities=14% Similarity=0.073 Sum_probs=183.8
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 83 (293)
.|...|..++.++.+.|++++|++.|...++.. +++.....++.+|++.++++....+. . .++...+..
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI----~----~~n~ad~~~ 1200 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI----N----GPNNAHIQQ 1200 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH----h----CCCHHHHHH
Confidence 467788999999999999999999999887743 44433445888899998887544332 2 345566778
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHH
Q 036775 84 VINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163 (293)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 163 (293)
+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. -+..+|..+-.+|...|++..|
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999999999986 48999999999999999999999987 3678999999999999999999
Q ss_pred HHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHh--cCChhhchHHHHHHH
Q 036775 164 LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRI--HRNDEMFDPIRQELV 239 (293)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~ 239 (293)
......+. .+...+..++..|.+.|.+++|+.+++.. +..+ +...|.-+...|++ .++..++.+.|..-.
T Consensus 1270 ~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A 1270 QMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred HHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 98766533 34556789999999999999999999877 5444 33456555555544 344444555554332
Q ss_pred hhcC-----CchhhHHHHHHHHhcCCCHHHHHHH
Q 036775 240 NKKG-----VSVGTFALMSNTFAGADRWEDANKI 268 (293)
Q Consensus 240 ~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~ 268 (293)
...+ -+...|.-++..|.+.|+++.|...
T Consensus 1344 ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1344 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 2222 3567899999999999999999854
No 80
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.40 E-value=1.3e-10 Score=91.30 Aligned_cols=155 Identities=8% Similarity=-0.156 Sum_probs=72.6
Q ss_pred hcccCcchHHHHHHHHHHhh---cCCCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----C----cccHHHHHHH
Q 036775 52 CSSISALSFGQYVHSYISTR---YDLSVS-NLVGNAVINMYVKCGDVGIAIQVFNMLAYK-----D----MISWSTVISG 118 (293)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~li~~ 118 (293)
+...|++++|...+.+..+. .+.++. ..+++.+..+|.+.|++++|+..|++..+- + ..+++.+..+
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33445555555555544431 111111 334555555555555555555555554421 1 1245555555
Q ss_pred HHhc-CCHHHHHHHHHHHHhCCCC----Cc-HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcch-----hHHHHHH
Q 036775 119 LAMN-GCGRQALQLFSLMIINGVF----PD-DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT-----QHYACVV 187 (293)
Q Consensus 119 ~~~~-~~~~~a~~~~~~m~~~g~~----p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~ 187 (293)
|... |++++|+..|++..+.... +. ..++..+...+.+.|++++|...|++..+...-.+.. ..+..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 5553 5555555555555432100 00 2345555555555566666665555555411111111 1344455
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 036775 188 DMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 188 ~~~~~~g~~~~a~~~~~~~ 206 (293)
.++...|++++|...|++.
T Consensus 207 ~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 5555556666666555555
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=1.6e-10 Score=93.82 Aligned_cols=234 Identities=8% Similarity=-0.054 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch----HHHHHHHHHHhcccCcchHHHHHHHHHHhhc---CCC--C-c
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN----EATLVNVLSACSSISALSFGQYVHSYISTRY---DLS--V-S 77 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~--~-~ 77 (293)
+++.+...+...|++++|.+.+++........++ ..++..+...+...|++++|...++...+.. +.+ | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 5667778889999999999999988663211112 2335566777889999999999999887622 221 2 3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC--------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH-hHHH
Q 036775 78 NLVGNAVINMYVKCGDVGIAIQVFNMLAYK--------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD-VTFI 148 (293)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~ 148 (293)
...+..+...+...|++++|...+++..+. ...++..+...+...|++++|...+++.......++. ..+.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 345677888999999999999999987642 1235777888899999999999999998753212111 1121
Q ss_pred -----HHHHHHhcCCChhHHHHHHHHhhhhcCCCc---chhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCchHh
Q 036775 149 -----ALISACSHGGLVDQGLILFKAMSTVYEIVP---QTQHYACVVDMYGRAGLLEEAEAFIREM-------PIEAEWS 213 (293)
Q Consensus 149 -----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~~~~ 213 (293)
..+..+...|++++|...++..... ...+ ....+..+...+...|++++|...+++. +..++..
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 293 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN 293 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHH
Confidence 2334477899999999999998752 2111 1234667888999999999999999876 2122232
Q ss_pred -HHHHHHHHHHhcCChhhchHHHHHHHhhc
Q 036775 214 -VWGALLNACRIHRNDEMFDPIRQELVNKK 242 (293)
Q Consensus 214 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 242 (293)
.+..+..++...|+.++|...+++.....
T Consensus 294 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 294 RNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 55566677899999999999998887644
No 82
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.36 E-value=4.6e-10 Score=87.27 Aligned_cols=173 Identities=12% Similarity=0.037 Sum_probs=94.9
Q ss_pred HHHHHHHhhh---CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcHhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775 97 AIQVFNMLAY---KDMISWSTVISGLAMNGCGRQALQLFSLMIINGV-FPDDVTFIALISACSHGGLVDQGLILFKAMST 172 (293)
Q Consensus 97 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 172 (293)
|+..|++..+ ++..++..+..++...|++++|++++.+....|. .-+...+...+..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555555543 2333344555666666666666666666655443 12445566666666666666666666666654
Q ss_pred hcCCCc-----chhHHHHHHHH--HHhcC--ChHHHHHHHHhC-CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhh-
Q 036775 173 VYEIVP-----QTQHYACVVDM--YGRAG--LLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK- 241 (293)
Q Consensus 173 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 241 (293)
. .| +..+...|..+ ....| +..+|..+|+++ ...|+..+-..++.++.+.|++++|...++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 1 34 23344444444 22223 666666666666 33344233333344566666666666666655543
Q ss_pred ---------cCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 242 ---------KGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 242 ---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
.|.++.+...+|......|+ +|.+++.++++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 25566666555555555555 56666666655
No 83
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=5.2e-12 Score=99.68 Aligned_cols=199 Identities=13% Similarity=0.018 Sum_probs=123.1
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------cCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhc-----C
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKT------KEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRY-----D 73 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~ 73 (293)
...++..+...|...|++++|...+++.... +..+.....+..+...+...|++++|...++.+.+.. +
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 147 (311)
T 3nf1_A 68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 4567888999999999999999999998764 2123346678888899999999999999999988731 2
Q ss_pred C-CCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC--
Q 036775 74 L-SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-----------DMISWSTVISGLAMNGCGRQALQLFSLMIING-- 139 (293)
Q Consensus 74 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-- 139 (293)
. +....++..+...+...|++++|.++|+++.+. ...++..+..++...|++++|...|+++.+..
T Consensus 148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 234456788888899999999999988877642 22357777788888888888888888776421
Q ss_pred -----CCCcH-------hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHh
Q 036775 140 -----VFPDD-------VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205 (293)
Q Consensus 140 -----~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 205 (293)
..+.. ..+......+...+.+.++...++.... ..+....++..+..+|.+.|++++|...|++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 303 (311)
T 3nf1_A 228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV--DSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303 (311)
T ss_dssp HHHC------CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 11111 1111112222233344444444444432 1122334455555555556666666555554
No 84
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.34 E-value=4.9e-10 Score=93.47 Aligned_cols=185 Identities=12% Similarity=0.007 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHhhhCC-cccH--HHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCcHhHHHH
Q 036775 80 VGNAVINMYVKCG---DVGIAIQVFNMLAYKD-MISW--STVISGLAMN----GCGRQALQLFSLMIINGVFPDDVTFIA 149 (293)
Q Consensus 80 ~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-~~~~--~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~ 149 (293)
.+..|...|.+.| +.++|++.|++..+.+ .... ..+...|... +++++|...|++.. .| +...+..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~ 253 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVS 253 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHH
Confidence 5556666666666 6666666666665442 2222 4455555443 56666777666665 22 2333334
Q ss_pred HHHH-H--hcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcC-----ChHHHHHHHHhCCCCchHhHHHHHHHH
Q 036775 150 LISA-C--SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAG-----LLEEAEAFIREMPIEAEWSVWGALLNA 221 (293)
Q Consensus 150 ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~l~~~ 221 (293)
+... + ...++.++|...|++..+ .| +...+..|...|. .| ++++|..+|++.- ..+...+..|...
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~ 327 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQI 327 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHH
Confidence 4433 2 346677777777776665 23 4445556666665 34 6777777777766 4455555555555
Q ss_pred HHh----cCChhhchHHHHHHHhhcCCchhhHHHHHHHHhc----CCCHHHHHHHHHHHHHcC
Q 036775 222 CRI----HRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG----ADRWEDANKIRDEIRRMG 276 (293)
Q Consensus 222 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 276 (293)
|.. ..+.++|...+++..+.+. +.....|..+|.. ..+.++|..+|+...+.|
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAARNGQ--NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHHTTTC--TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHCCCCCCcCHHHHHHHHHHHHhhCh--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 544 3366677777766665443 3345555555553 446777777777666555
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.34 E-value=4e-11 Score=93.10 Aligned_cols=133 Identities=11% Similarity=-0.019 Sum_probs=102.6
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------cCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhc-----C
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKT------KEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRY-----D 73 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~ 73 (293)
+..+|..+...|...|++++|+..|++.... +..+....++..+..++...|++++|...++++.... .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 4677889999999999999999999998764 2123345688889999999999999999999987721 1
Q ss_pred -CCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----------CcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036775 74 -LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-----------DMISWSTVISGLAMNGCGRQALQLFSLMII 137 (293)
Q Consensus 74 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 137 (293)
.+....++..+...|...|++++|...|++..+. ...++..+..++...|++++|...|++..+
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2334566788888888999999999888877642 134566777777777888888777777654
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.31 E-value=1.5e-10 Score=90.93 Aligned_cols=186 Identities=10% Similarity=0.011 Sum_probs=101.3
Q ss_pred HHHHcCCHHHHHHHHHHhhhC-----C----cccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-cHhHHHHHHH
Q 036775 87 MYVKCGDVGIAIQVFNMLAYK-----D----MISWSTVISGLAMNGCGRQALQLFSLMIIN----GVFP-DDVTFIALIS 152 (293)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~ 152 (293)
.|...|++++|.+.|++..+- + ..+|+.+..+|...|++++|+..|++..+. |-.+ -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666777776666655431 1 345666666777777777777766665532 1110 1245666666
Q ss_pred HHhcC-CChhHHHHHHHHhhhhcCCCcc----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch---H-----hHHHHH
Q 036775 153 ACSHG-GLVDQGLILFKAMSTVYEIVPQ----TQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE---W-----SVWGAL 218 (293)
Q Consensus 153 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~---~-----~~~~~l 218 (293)
.|... |++++|...|++..+...-..+ ..++..+...|.+.|++++|+..|++. ...|+ . ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 66664 7777777777666542110001 235666666777777777777777665 11111 1 134555
Q ss_pred HHHHHhcCChhhchHHHHHHHhhcCCchh-----hHHHHHHHHh--cCCCHHHHHHHHHHH
Q 036775 219 LNACRIHRNDEMFDPIRQELVNKKGVSVG-----TFALMSNTFA--GADRWEDANKIRDEI 272 (293)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~li~~~~--~~g~~~~a~~~~~~m 272 (293)
..++...|+++.|...+++..+..|.... .+..++.++. ..+++++|.+.|+++
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 55566677777777777666654433222 2333444443 445666666666543
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.30 E-value=2.1e-10 Score=88.43 Aligned_cols=103 Identities=11% Similarity=0.010 Sum_probs=68.8
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch-HHHHHHHHHHhcccCcchHHHHHHHHHHhhcC-CCCchhHH
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGQYVHSYISTRYD-LSVSNLVG 81 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 81 (293)
.+...+-.+...+.+.|++++|+..|+++.+..+..|. ...+..+..++...|++++|...++...+... .+.....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 35556666677777888888888888888774311111 45666777777888888888888888776211 11223456
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHhhh
Q 036775 82 NAVINMYVK--------CGDVGIAIQVFNMLAY 106 (293)
Q Consensus 82 ~~l~~~~~~--------~~~~~~A~~~~~~~~~ 106 (293)
..+..++.. .|++++|+..|+++.+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 666777777 7778888888877764
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.30 E-value=8.2e-11 Score=103.10 Aligned_cols=181 Identities=7% Similarity=-0.051 Sum_probs=101.1
Q ss_pred HHcCCHHHHHHHHHHHH--------HccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036775 17 AERGFCEEAVSVFQEME--------KTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMY 88 (293)
Q Consensus 17 ~~~~~~~~a~~~~~~m~--------~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 88 (293)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|...++++.+ ..+.+...+..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHH
Confidence 45566666666666665 21 133344555555666666666666666666655 2334455566666666
Q ss_pred HHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHH
Q 036775 89 VKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI 165 (293)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 165 (293)
...|++++|++.|++..+. +...|..+..++.+.|++++ .+.|++..+.+.. +...|..+..++.+.|++++|..
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666665532 44556666666666666666 6666666554332 44556666666666666666666
Q ss_pred HHHHhhhhcCCCcc-hhHHHHHHHHHHhcCC--------hHHHHHHHHhC
Q 036775 166 LFKAMSTVYEIVPQ-TQHYACVVDMYGRAGL--------LEEAEAFIREM 206 (293)
Q Consensus 166 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~--------~~~a~~~~~~~ 206 (293)
.|++..+ ..|+ ...+..+..++...++ +++|.+.+..+
T Consensus 556 ~~~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 556 TLDEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 6666653 1232 3445555555544332 45555555555
No 89
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.30 E-value=1.2e-09 Score=91.22 Aligned_cols=257 Identities=9% Similarity=-0.036 Sum_probs=185.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccC---cchHHHHHHHHHHhhcCCCCchhHHH
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS---ALSFGQYVHSYISTRYDLSVSNLVGN 82 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (293)
...+..|...|...+.++++......+.+.- ...++..+..+...+...| +.++|.+.|+...+ .-+++...+.
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a-~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~--~g~~~a~~~~ 217 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAA-LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS--RGTVTAQRVD 217 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHH-TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--TTCSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH--CCCHHHHHHH
Confidence 3455556666666665554444433332221 2233347777888888888 99999999999987 3455556556
Q ss_pred HHHHHHHHc----CCHHHHHHHHHHhhhCCcccHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh
Q 036775 83 AVINMYVKC----GDVGIAIQVFNMLAYKDMISWSTVISG-L--AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155 (293)
Q Consensus 83 ~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 155 (293)
.|...|... +++++|.++|++....+...+..+... + ...+++++|.+.|++..+.| +...+..+...|.
T Consensus 218 ~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 218 SVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY 294 (452)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 777777665 799999999999983377788888877 4 56899999999999999876 5556666666666
Q ss_pred cCC-----ChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHh----cCChHHHHHHHHhCCCCchHhHHHHHHHHHHh--
Q 036775 156 HGG-----LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR----AGLLEEAEAFIREMPIEAEWSVWGALLNACRI-- 224 (293)
Q Consensus 156 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~-- 224 (293)
.| +.++|...|+... +.+...+..|...|.. ..+.++|..+|++.-...+......|...|..
T Consensus 295 -~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~ 368 (452)
T 3e4b_A 295 -EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGK 368 (452)
T ss_dssp -HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCT
T ss_pred -cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCC
Confidence 44 8999999999876 3456677788888877 34899999999998323344555666666653
Q ss_pred --cCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 225 --HRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 225 --~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
..+.+.|..+++...+.+.+........+......++..+|.++.++.++
T Consensus 369 g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 369 GTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp TBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 56889999999999988876655555555555666788888888887655
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.29 E-value=1.9e-10 Score=78.72 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=76.5
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CchHhHHHHHHHHHHh
Q 036775 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNACRI 224 (293)
Q Consensus 147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~ 224 (293)
+..+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|..+++++ .. ..+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444445555555555555555431 1223344555555555555555555555554 11 1233445556666666
Q ss_pred cCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775 225 HRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM 275 (293)
Q Consensus 225 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 275 (293)
.|+++.|...++++.+..|.+..++..+...+.+.|++++|.+.++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777777666667777788888888888888888888877653
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.29 E-value=1.8e-10 Score=88.84 Aligned_cols=64 Identities=13% Similarity=-0.035 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCch----HhHHHHHHHHHHhc----------CChhhchHHHHHHHhhcCCchh
Q 036775 184 ACVVDMYGRAGLLEEAEAFIREM-PIEAE----WSVWGALLNACRIH----------RNDEMFDPIRQELVNKKGVSVG 247 (293)
Q Consensus 184 ~~l~~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~ 247 (293)
..+...|.+.|++++|+..|++. ...|+ ...+..+..+|... |++++|...++++.+..|.++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 45677788888888888888776 22232 33566666666654 7778888888888887776643
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.27 E-value=2.7e-10 Score=77.88 Aligned_cols=127 Identities=15% Similarity=0.111 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN 86 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (293)
..|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.. ..+.+...+..+..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~ 77 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH--HCCCchHHHHHHHH
Confidence 356677777788888888888888876642 33455666666667777777777777777765 23344555566666
Q ss_pred HHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036775 87 MYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMII 137 (293)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 137 (293)
.+...|++++|.+.++++.+. +..++..+...+...|++++|...++++..
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666666665432 334455555555666666666666655544
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.25 E-value=7.9e-11 Score=103.22 Aligned_cols=169 Identities=9% Similarity=-0.100 Sum_probs=121.9
Q ss_pred HHcCCHHHHHHHHHHhh--------h---CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcC
Q 036775 89 VKCGDVGIAIQVFNMLA--------Y---KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157 (293)
Q Consensus 89 ~~~~~~~~A~~~~~~~~--------~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 157 (293)
...|++++|++.+++.. + .+...+..+..++...|++++|.+.|++..+.... +...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 56778888888888776 2 25566777777888888888888888887765433 566777777778888
Q ss_pred CChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHH
Q 036775 158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIR 235 (293)
Q Consensus 158 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 235 (293)
|++++|...|++..+. -+.+...+..+..+|.+.|++++ +..|++. ...| +...|..+..++...|++++|...+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888887752 13345667778888888888888 7777776 3344 4456777777788888888888888
Q ss_pred HHHHhhcCCchhhHHHHHHHHhcCCC
Q 036775 236 QELVNKKGVSVGTFALMSNTFAGADR 261 (293)
Q Consensus 236 ~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (293)
++..+..|.+...+..+..++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 88877777777778777777766554
No 94
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.25 E-value=5.4e-09 Score=90.71 Aligned_cols=233 Identities=5% Similarity=-0.085 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHcC-------CHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHH-HHHHHHHhhcCCCCch
Q 036775 7 VSWTTMIGGYAERG-------FCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ-YVHSYISTRYDLSVSN 78 (293)
Q Consensus 7 ~~y~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~ 78 (293)
..|...+..--..+ ..+.+..+|++.... .+-+...|......+...|+.+.|. .+++.... .+|.+.
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~--~~P~s~ 378 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ--CIPNSA 378 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hCCCCH
Confidence 45666665433322 134567789998876 5667888888888888889999996 99999987 567788
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhh-------------CC------------cccHHHHHHHHHhcCCHHHHHHHHH
Q 036775 79 LVGNAVINMYVKCGDVGIAIQVFNMLAY-------------KD------------MISWSTVISGLAMNGCGRQALQLFS 133 (293)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~~~~~~a~~~~~ 133 (293)
..|...+....+.|++++|.++|+++.+ |+ ..+|...++...+.|+.+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888899999999999999999998874 21 2358888888888999999999999
Q ss_pred HHHhC-CCCCcHhHHHHHHHHHhc-CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc
Q 036775 134 LMIIN-GVFPDDVTFIALISACSH-GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA 210 (293)
Q Consensus 134 ~m~~~-g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~ 210 (293)
+..+. +. +....|......-.+ .++.+.|.++|+...+. ++-+...+...++.....|+.+.|..+|++. ...|
T Consensus 459 ~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 459 KCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 99876 22 123334333322233 35599999999999873 4445666778888888899999999999997 3333
Q ss_pred ----hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCch
Q 036775 211 ----EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSV 246 (293)
Q Consensus 211 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 246 (293)
....|...+.--...|+.+.+..+.+++.+..|.+.
T Consensus 536 ~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 345788888888899999999999999999887653
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.23 E-value=1.4e-09 Score=81.92 Aligned_cols=182 Identities=9% Similarity=-0.115 Sum_probs=121.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhhh--CCc----ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH--hHHHH
Q 036775 78 NLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDM----ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD--VTFIA 149 (293)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ 149 (293)
...+..+...+.+.|++++|+..|+++.+ |+. ..+..+..++.+.|++++|...|+++.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34556677788888999999999998875 322 35777888889999999999999998875433111 13334
Q ss_pred HHHHHhc------------------CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCch
Q 036775 150 LISACSH------------------GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 211 (293)
Q Consensus 150 ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 211 (293)
+..++.. .|+.++|...|+.+.+. .+-+...+........-.+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~--------------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRL--------------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHH---------------
Confidence 4444433 45677777777777652 222222222211110000000
Q ss_pred HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCch---hhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775 212 WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSV---GTFALMSNTFAGADRWEDANKIRDEIRRMG 276 (293)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 276 (293)
......+...|...|+++.|...++.+.+..|.++ ..+..+..++.+.|++++|.+.++.+...+
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 00112345568899999999999999999887765 568889999999999999999999888754
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.22 E-value=3.8e-09 Score=82.17 Aligned_cols=180 Identities=8% Similarity=-0.011 Sum_probs=134.1
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----CcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 036775 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-----DMISWSTVISGLAMNGCGRQALQLFSLM 135 (293)
Q Consensus 61 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m 135 (293)
+...+++..+ .+ +++......+..++...|++++|++++.+.... +...+..+++.+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~-~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLK-DK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTT-TS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455555544 22 455666678889999999999999999998654 3456778899999999999999999999
Q ss_pred HhCCCCC-----cHhHHHHHHHHHh--c--CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 136 IINGVFP-----DDVTFIALISACS--H--GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 136 ~~~g~~p-----~~~~~~~ll~~~~--~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
.+. .| +..+...+..++. . .++..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 875 55 3666677776633 2 34899999999999752 355333344555899999999999999876
Q ss_pred -CC-----------CchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhH
Q 036775 207 -PI-----------EAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTF 249 (293)
Q Consensus 207 -~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 249 (293)
.. ..|..+...++......|+ .+.++++++.+..|.++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 22 3356666566666555676 88999999999998877554
No 97
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.22 E-value=8.9e-10 Score=87.12 Aligned_cols=221 Identities=10% Similarity=-0.031 Sum_probs=142.6
Q ss_pred HcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHH
Q 036775 18 ERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 97 (293)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 97 (293)
..|++++|.+++++..+.. +.. .+...++++.|...|... ...|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~~---------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KTS---------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CCC---------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--ccc---------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHH
Confidence 3577888999988887642 111 011135666666666553 3456677888888
Q ss_pred HHHHHHhhhC-----C----cccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-cHhHHHHHHHHHhcCCChhHH
Q 036775 98 IQVFNMLAYK-----D----MISWSTVISGLAMNGCGRQALQLFSLMIIN----GVFP-DDVTFIALISACSHGGLVDQG 163 (293)
Q Consensus 98 ~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a 163 (293)
...|.+..+- + ..+|+.+..+|...|++++|...|++..+. |-.. ...++..+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 8887776532 1 346777788888888888888888876542 2111 13567777777877 888888
Q ss_pred HHHHHHhhhhcCCC---c-chhHHHHHHHHHHhcCChHHHHHHHHhC-CC------Cch-HhHHHHHHHHHHhcCChhhc
Q 036775 164 LILFKAMSTVYEIV---P-QTQHYACVVDMYGRAGLLEEAEAFIREM-PI------EAE-WSVWGALLNACRIHRNDEMF 231 (293)
Q Consensus 164 ~~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~------~~~-~~~~~~l~~~~~~~~~~~~a 231 (293)
...|++..+...-. + ...++..+...|.+.|++++|+..|++. .. .+. ...+..+...+...|+++.|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 88888876522111 0 1356777888888889988888888876 11 111 12455566667778889999
Q ss_pred hHHHHHHHhhcCCchh-----hHHHHHHHHhcCCCHHHHHHH
Q 036775 232 DPIRQELVNKKGVSVG-----TFALMSNTFAGADRWEDANKI 268 (293)
Q Consensus 232 ~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~a~~~ 268 (293)
...+++.. ..|.... ....++.++ ..|+.+.+.++
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 88888887 5543222 244455555 46676666553
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.20 E-value=1.6e-09 Score=80.57 Aligned_cols=186 Identities=12% Similarity=-0.021 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHH-HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA-TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI 85 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 85 (293)
..+-.....+...|++++|+..|++..+. .|+.. .|.. .. .. ............+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~-~~-~~------------------~~~~~~~~~~~~lg 61 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYW-TN-VD------------------KNSEISSKLATELA 61 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHH-HH-SC------------------TTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHH-hh-hc------------------chhhhhHHHHHHHH
Confidence 33444556778899999999999998884 45533 3332 00 00 00111122334566
Q ss_pred HHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC--h
Q 036775 86 NMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL--V 160 (293)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~ 160 (293)
.+|.+.|++++|+..|++..+. +...|..+..++...|++++|...|++..+..+. +..++..+..++...|+ .
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHH
Confidence 7777777777777777776642 4556777777777777777777777777765432 45666666666554443 3
Q ss_pred hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhHHHHHH
Q 036775 161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALL 219 (293)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~ 219 (293)
+.+...++.... ..|....+.....++...|++++|...|++. ...|+......+.
T Consensus 141 ~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 141 KKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 334444444332 1222333444555666677777777777776 5666655444433
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.18 E-value=4.1e-09 Score=78.54 Aligned_cols=159 Identities=9% Similarity=-0.120 Sum_probs=72.6
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC----ChhHHHHHHHHhhhhcCCCcchhHHH
Q 036775 109 MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG----LVDQGLILFKAMSTVYEIVPQTQHYA 184 (293)
Q Consensus 109 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ 184 (293)
...+..+...|...+++++|.+.|++..+.| +...+..+-..|.. + +.++|...|+...+ . .+...+.
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~---g~~~a~~ 89 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-A---GSKSGEI 89 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-T---TCHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-C---CCHHHHH
Confidence 3344444444444444444444444444432 22333333333433 3 45555555555443 1 1233344
Q ss_pred HHHHHHHh----cCChHHHHHHHHhC-CCCch---HhHHHHHHHHHHh----cCChhhchHHHHHHHhhcCCchhhHHHH
Q 036775 185 CVVDMYGR----AGLLEEAEAFIREM-PIEAE---WSVWGALLNACRI----HRNDEMFDPIRQELVNKKGVSVGTFALM 252 (293)
Q Consensus 185 ~l~~~~~~----~g~~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l 252 (293)
.|...|.. .+++++|+.+|++. ...|. ...+..|...|.. .++.+.|...+++..+. +.++..+..|
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~L 168 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWA 168 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHH
Confidence 44444444 44555555555554 22221 3344444444444 44555555555555544 2233345555
Q ss_pred HHHHhcC-C-----CHHHHHHHHHHHHHcC
Q 036775 253 SNTFAGA-D-----RWEDANKIRDEIRRMG 276 (293)
Q Consensus 253 i~~~~~~-g-----~~~~a~~~~~~m~~~~ 276 (293)
..+|... | ++++|.++|++..+.|
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5555432 2 5666666666555544
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.17 E-value=1.6e-09 Score=80.54 Aligned_cols=127 Identities=7% Similarity=-0.077 Sum_probs=99.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcC
Q 036775 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAG 194 (293)
Q Consensus 115 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 194 (293)
+..++.+.|++++|...|++..+..+. +...+..+..++...|++++|...|++..+. -+.+...+..+..+|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 888999999999999999999987544 6788999999999999999999999999873 2445678888988887665
Q ss_pred C--hHHHHHHHHhCC-CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCC
Q 036775 195 L--LEEAEAFIREMP-IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244 (293)
Q Consensus 195 ~--~~~a~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 244 (293)
. .+.+...++... ..|....+.....++...|++++|...+++..+..|.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4 455667777663 2333334444555677789999999999999988774
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.17 E-value=1.5e-10 Score=81.44 Aligned_cols=141 Identities=5% Similarity=-0.125 Sum_probs=90.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChH
Q 036775 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLE 197 (293)
Q Consensus 118 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 197 (293)
.+...|++++|+..+........ -+...+..+...|.+.|++++|.+.|++..+. -+-+..+|..+..+|...|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence 33445666777776666544311 12344556666677777777777777777652 1334566777777777777777
Q ss_pred HHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchH-HHHHHHhhcCCchhhHHHHHHHHhcCCC
Q 036775 198 EAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDP-IRQELVNKKGVSVGTFALMSNTFAGADR 261 (293)
Q Consensus 198 ~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (293)
+|+..|++. ...| +...|..+...|...|+.+++.. ++++..+..|.++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777776 3444 34566777777777777765444 4577777777777788777777766664
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.16 E-value=1.4e-09 Score=85.17 Aligned_cols=175 Identities=6% Similarity=-0.138 Sum_probs=115.7
Q ss_pred HHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhc
Q 036775 95 GIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174 (293)
Q Consensus 95 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 174 (293)
+...+.+......+...+..+...+.+.|++++|...|++..+.... +...+..+...+.+.|++++|...++.+...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 33444444444334455666667777778888888888777765433 5566777777777888888888887777642
Q ss_pred CCCcchhHH-HHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCc--hhhH
Q 036775 175 EIVPQTQHY-ACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS--VGTF 249 (293)
Q Consensus 175 ~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 249 (293)
.|+.... ......+...++.++|...+++. ...| +...+..+...+...|++++|...++++.+..|.+ ...+
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 2443322 22233455666777777777666 3334 44567777777788888888888888877777655 6677
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH
Q 036775 250 ALMSNTFAGADRWEDANKIRDEIR 273 (293)
Q Consensus 250 ~~li~~~~~~g~~~~a~~~~~~m~ 273 (293)
..++..+...|+.++|...+++-.
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 888888888888888777776543
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.15 E-value=3.5e-08 Score=77.33 Aligned_cols=148 Identities=7% Similarity=0.096 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChh--HHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC-----
Q 036775 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD--QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL----- 195 (293)
Q Consensus 123 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 195 (293)
+++++++++++++.+...+ +-.+|..-...+.+.|.++ ++++.++.+.+. -+-|...|+.....+...++
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 3444444444444443322 3444444444444444444 444444444431 12233344433333333333
Q ss_pred -hHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhh-chHHHHHHHhhc---CCchhhHHHHHHHHhcCCCHHHHHHH
Q 036775 196 -LEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEM-FDPIRQELVNKK---GVSVGTFALMSNTFAGADRWEDANKI 268 (293)
Q Consensus 196 -~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~ 268 (293)
++++++.++++ ...| |...|+.+-..+...|+... +..+.+.+.+.. +.++..+..++.++.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 44444444444 1122 33344444444444444222 333444433322 44555666666666666666666666
Q ss_pred HHHHH
Q 036775 269 RDEIR 273 (293)
Q Consensus 269 ~~~m~ 273 (293)
++.+.
T Consensus 281 ~~~l~ 285 (306)
T 3dra_A 281 YDLLK 285 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.15 E-value=9.6e-10 Score=94.49 Aligned_cols=160 Identities=14% Similarity=0.030 Sum_probs=122.1
Q ss_pred cCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHH
Q 036775 91 CGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF 167 (293)
Q Consensus 91 ~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 167 (293)
.|++++|++.|++..+. +...|..+...+...|++++|.+.|++..+.... +...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999988753 4567889999999999999999999999886543 6788999999999999999999999
Q ss_pred HHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhc---CChhhchHHHHHHHhhc
Q 036775 168 KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIH---RNDEMFDPIRQELVNKK 242 (293)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 242 (293)
++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...+++..+..
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999873 2445678899999999999999999999988 3344 456788888889999 99999999999999998
Q ss_pred CCchhhHHHHH
Q 036775 243 GVSVGTFALMS 253 (293)
Q Consensus 243 ~~~~~~~~~li 253 (293)
|.+...|..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 88877777665
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.15 E-value=2.6e-09 Score=83.59 Aligned_cols=163 Identities=6% Similarity=-0.099 Sum_probs=121.9
Q ss_pred CCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhH-HHH
Q 036775 74 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT-FIA 149 (293)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ 149 (293)
.+.+...+..+...+.+.|++++|+..|++..+. +...+..+...+.+.|++++|...++++.... |+... ...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 4556667778888888899999999999888743 45678888888899999999999998886653 34332 222
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch---HhHHHHHHHHHHhc
Q 036775 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE---WSVWGALLNACRIH 225 (293)
Q Consensus 150 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~~~ 225 (293)
....+...++.+.|...+++.... -+.+...+..+...|...|++++|...|+++ ...|+ ...+..+...+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 233356777788888888888762 2455677888888999999999999998888 33343 55788888888888
Q ss_pred CChhhchHHHHHHHh
Q 036775 226 RNDEMFDPIRQELVN 240 (293)
Q Consensus 226 ~~~~~a~~~~~~~~~ 240 (293)
|+.+.+...+++...
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 988888888876543
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.14 E-value=9.1e-08 Score=74.95 Aligned_cols=231 Identities=8% Similarity=-0.027 Sum_probs=179.1
Q ss_pred HHcCC-HHHHHHHHHHHHHccCCCch-HHHHHHHHHHhcccC--cchHHHHHHHHHHhhcCCCCchhHHHHHHHHH----
Q 036775 17 AERGF-CEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSIS--ALSFGQYVHSYISTRYDLSVSNLVGNAVINMY---- 88 (293)
Q Consensus 17 ~~~~~-~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---- 88 (293)
.+.|. .++|+++++.+... .|+ ...|+.--.++...+ +++++.++++.+.. ..|.+..+|+.-...+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~---nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~--~nPk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE---LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIAL--DNEKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH--HCTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH---CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH--HCcccHHHHHHHHHHHHHHH
Confidence 34444 56899999999984 455 456777777777777 99999999999988 4566666776554444
Q ss_pred HHc---CCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC-
Q 036775 89 VKC---GDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGR--QALQLFSLMIINGVFPDDVTFIALISACSHGGL- 159 (293)
Q Consensus 89 ~~~---~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~- 159 (293)
... +++++++++++++.+. +..+|+.-.-++.+.|.++ ++++.++++.+..+. |-..|+.-...+.+.+.
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGG
T ss_pred HhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 555 7899999999999865 5567777777788889888 999999999988766 77888877777777776
Q ss_pred -----hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CchHhHHHHHHHHHHhcCCh
Q 036775 160 -----VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE-AEAFIREM-PI----EAEWSVWGALLNACRIHRND 228 (293)
Q Consensus 160 -----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~ 228 (293)
++++++.++.+.. -.+-|...|+.+...+.+.|+..+ +..+.+++ .. ..+...+..+...|.+.|+.
T Consensus 197 ~~~~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp CCHHHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred chhhhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 8899999999886 335677889989888988888544 55676666 22 23566788888899999999
Q ss_pred hhchHHHHHHHh-hcCCchhhHHHHHHH
Q 036775 229 EMFDPIRQELVN-KKGVSVGTFALMSNT 255 (293)
Q Consensus 229 ~~a~~~~~~~~~-~~~~~~~~~~~li~~ 255 (293)
++|..+++.+.+ .+|.....|+..+..
T Consensus 275 ~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 275 NESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 999999999987 568777777766543
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.14 E-value=5.7e-10 Score=78.39 Aligned_cols=139 Identities=6% Similarity=-0.017 Sum_probs=77.6
Q ss_pred HhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHH
Q 036775 51 ACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQ 127 (293)
Q Consensus 51 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~ 127 (293)
.+...|++++|...++.... ..+.+...+..+...|.+.|++++|++.|++..+. +..+|..+..++.+.|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 34455666666666665543 22223444555666666666666666666666532 44566666666666666666
Q ss_pred HHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHH-HHHhhhhcCCCcchhHHHHHHHHHHhcC
Q 036775 128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL-FKAMSTVYEIVPQTQHYACVVDMYGRAG 194 (293)
Q Consensus 128 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g 194 (293)
|...|++..+.... +..++..+...+.+.|+.++|.+. ++...+. .+-+..+|......+...|
T Consensus 84 A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 66666666654332 455666666666666666554443 3555541 1223445555555554444
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.12 E-value=1.1e-08 Score=76.91 Aligned_cols=184 Identities=9% Similarity=-0.013 Sum_probs=112.5
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCc-hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch-hHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEP-NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN-LVGN 82 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 82 (293)
+...+..+...+.+.|++++|+..|+++.+..+..| ....+..+..++.+.|++++|...++.+.+...-.+.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 345566677788999999999999999987532222 23577778888999999999999999998722111211 2344
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHhhhCCc---ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 036775 83 AVINMYVK------------------CGDVGIAIQVFNMLAYKDM---ISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141 (293)
Q Consensus 83 ~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 141 (293)
.+..++.+ .|+.++|...|+++.+.++ ..+....... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~----------~~~~~~------ 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV----------FLKDRL------ 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH----------HHHHHH------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH----------HHHHHH------
Confidence 45555544 3556666666666654321 1221111000 000000
Q ss_pred CcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 142 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
......+...+.+.|++++|...|+.+.+...-.| ....+..+..+|.+.|+.++|.+.++.+
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 00112345567778888888888888876321111 1245777788888888888888888776
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.12 E-value=1.7e-09 Score=78.08 Aligned_cols=154 Identities=10% Similarity=-0.012 Sum_probs=85.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHH-Hhc
Q 036775 81 GNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA-CSH 156 (293)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~ 156 (293)
...+...+.+.|++++|...|++..+. +...+..+..++...|++++|...|++...... +...+...... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence 345556666777777777777766532 455666677777777777777777776654322 33222211111 112
Q ss_pred CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch---HhHHHHHHHHHHhcCChhhch
Q 036775 157 GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE---WSVWGALLNACRIHRNDEMFD 232 (293)
Q Consensus 157 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~ 232 (293)
.+...+|...+++..+. .+.+...+..+..++...|++++|...|++. ...|+ ...+..+...+...|+.+.|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22233456666666541 1223556666666666677777776666665 33443 335555556666666666666
Q ss_pred HHHHHH
Q 036775 233 PIRQEL 238 (293)
Q Consensus 233 ~~~~~~ 238 (293)
..+++.
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.11 E-value=1.5e-09 Score=93.22 Aligned_cols=147 Identities=8% Similarity=-0.103 Sum_probs=112.7
Q ss_pred cCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHH
Q 036775 55 ISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQL 131 (293)
Q Consensus 55 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~ 131 (293)
.|++++|.+.+++..+ ..+.+...+..+...+.+.|++++|.+.|++..+. +...|..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999999876 34556788899999999999999999999998864 456788899999999999999999
Q ss_pred HHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc---CChHHHHHHHHhC
Q 036775 132 FSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA---GLLEEAEAFIREM 206 (293)
Q Consensus 132 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~ 206 (293)
|++..+.... +...+..+..++.+.|++++|.+.+++..+. .+.+...+..+..++... |+.++|.+.+++.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999886443 6788999999999999999999999999873 234567888999999999 9999999999988
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.10 E-value=1e-08 Score=76.22 Aligned_cols=130 Identities=9% Similarity=-0.014 Sum_probs=107.4
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 83 (293)
.+...+..+...+...|++++|++.|++. +.|+...+..+..++...|++++|...++...+ ..+.+...+..
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~ 76 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHH
Confidence 34556667778888999999999999876 456788888999999999999999999999887 34566778889
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhC---Cc----------------ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 036775 84 VINMYVKCGDVGIAIQVFNMLAYK---DM----------------ISWSTVISGLAMNGCGRQALQLFSLMIINGV 140 (293)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~~---~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 140 (293)
+..+|...|++++|.+.|++..+. +. ..+..+..++...|++++|...|++..+...
T Consensus 77 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999999999988763 22 5678888889999999999999998887643
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.09 E-value=1.3e-09 Score=78.68 Aligned_cols=159 Identities=9% Similarity=0.023 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINM 87 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 87 (293)
.+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.. ..|+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHH
Confidence 34555667777888888888888776642 34456677777777788888888888877655 12233322222111
Q ss_pred -HHHcCCHHHHHHHHHHhhh--C-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-cHhHHHHHHHHHhcCCChhH
Q 036775 88 -YVKCGDVGIAIQVFNMLAY--K-DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP-DDVTFIALISACSHGGLVDQ 162 (293)
Q Consensus 88 -~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~ 162 (293)
+...++..+|...|++..+ | +...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 1122222345666665553 2 34556666666666777777777776666654332 23456666666666666666
Q ss_pred HHHHHHHhh
Q 036775 163 GLILFKAMS 171 (293)
Q Consensus 163 a~~~~~~~~ 171 (293)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=2.4e-08 Score=74.35 Aligned_cols=174 Identities=10% Similarity=-0.101 Sum_probs=95.8
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-CcccHHHHHHHHHhcC----CHHHHHHHHHHH
Q 036775 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGLAMNG----CGRQALQLFSLM 135 (293)
Q Consensus 61 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~----~~~~a~~~~~~m 135 (293)
|.+.|+...+ . -+...+..|...|...+++++|+++|++..+. +...+..|...|.. + ++++|.+.|++.
T Consensus 5 A~~~~~~aa~-~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAE-A---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHH-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-C---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4444444444 1 34445555666666666666666666665544 44455555555555 4 666666666666
Q ss_pred HhCCCCCcHhHHHHHHHHHhc----CCChhHHHHHHHHhhhhcCCC-cchhHHHHHHHHHHh----cCChHHHHHHHHhC
Q 036775 136 IINGVFPDDVTFIALISACSH----GGLVDQGLILFKAMSTVYEIV-PQTQHYACVVDMYGR----AGLLEEAEAFIREM 206 (293)
Q Consensus 136 ~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~ 206 (293)
.+.| +...+..+-..|.. .+++++|...|++..+ .+.. .+...+..|...|.. .+++++|..+|++.
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 5543 34445555555554 5666666666666664 2211 014455666666666 56666676666666
Q ss_pred -CCCchHhHHHHHHHHHHhc-C-----ChhhchHHHHHHHhhcC
Q 036775 207 -PIEAEWSVWGALLNACRIH-R-----NDEMFDPIRQELVNKKG 243 (293)
Q Consensus 207 -~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~ 243 (293)
....+...+..|...|... | +.++|...+++..+.+.
T Consensus 156 ~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 2223334455555555432 2 66666666666665543
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.07 E-value=6.6e-09 Score=77.24 Aligned_cols=130 Identities=11% Similarity=-0.050 Sum_probs=94.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775 81 GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160 (293)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 160 (293)
+..+...+...|++++|.+.|++...++..+|..+..++...|++++|...|++..+... .+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcccH
Confidence 455666777788888888888887777777788888888888888888888888776543 2566777777888888888
Q ss_pred hHHHHHHHHhhhhcC-------------CCc-chhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch
Q 036775 161 DQGLILFKAMSTVYE-------------IVP-QTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE 211 (293)
Q Consensus 161 ~~a~~~~~~~~~~~~-------------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~ 211 (293)
++|...|+...+... ..| ....+..+..+|...|++++|...|++. ...|+
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 888888888775211 111 1256777788888888888888888776 44453
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.04 E-value=3.1e-08 Score=78.18 Aligned_cols=163 Identities=8% Similarity=-0.043 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccC---CCc-hHHHHHHHHHHhcccCcchHHHHHHHHHHhhc---CCCC-chh
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKE---AEP-NEATLVNVLSACSSISALSFGQYVHSYISTRY---DLSV-SNL 79 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~ 79 (293)
.|+.....|...|++++|.+.|.+...... ..+ -..+|..+..++...|++++|...+++..+.. |.+. ...
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555666666666766666666544210 001 12355555666666666666666666655411 1111 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhC-----C----cccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCc-Hh
Q 036775 80 VGNAVINMYVKCGDVGIAIQVFNMLAYK-----D----MISWSTVISGLAMNGCGRQALQLFSLMIIN----GVFPD-DV 145 (293)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~ 145 (293)
++..+...|.. |++++|+..|++..+- + ..+++.+...+.+.|++++|+..|++.... +..++ ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 44555555655 6666666666655421 0 234555555666666666666666655432 11111 12
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775 146 TFIALISACSHGGLVDQGLILFKAMS 171 (293)
Q Consensus 146 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 171 (293)
++..+..++...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34444444555566666666665554
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.03 E-value=4.5e-08 Score=76.73 Aligned_cols=159 Identities=6% Similarity=-0.062 Sum_probs=83.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH-----hHHHHHHHHHhcCCChhHHHHHHHHhhhhcC--CCcc--hhHHH
Q 036775 114 TVISGLAMNGCGRQALQLFSLMIINGVFPDD-----VTFIALISACSHGGLVDQGLILFKAMSTVYE--IVPQ--TQHYA 184 (293)
Q Consensus 114 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~~~~ 184 (293)
..+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+++..+... ..+. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 3444555566666666666555443221110 1122333444555666666666665543111 0111 23556
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-------CCCc--hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcC------CchhhH
Q 036775 185 CVVDMYGRAGLLEEAEAFIREM-------PIEA--EWSVWGALLNACRIHRNDEMFDPIRQELVNKKG------VSVGTF 249 (293)
Q Consensus 185 ~l~~~~~~~g~~~~a~~~~~~~-------~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~ 249 (293)
.+...|...|++++|...+++. +..+ ...++..+...|...|++++|...+++..+..+ .-..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 6666666666666666666554 1111 113555566666666666666666666554321 114556
Q ss_pred HHHHHHHhcCCCHHHH-HHHHHHH
Q 036775 250 ALMSNTFAGADRWEDA-NKIRDEI 272 (293)
Q Consensus 250 ~~li~~~~~~g~~~~a-~~~~~~m 272 (293)
..+..+|.+.|++++| ...+++.
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHH
Confidence 6777777777777777 5555554
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.00 E-value=2.4e-07 Score=72.50 Aligned_cols=160 Identities=6% Similarity=-0.079 Sum_probs=109.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCcHh----HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc----hhHHHH
Q 036775 115 VISGLAMNGCGRQALQLFSLMIINGV-FPDDV----TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----TQHYAC 185 (293)
Q Consensus 115 li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 185 (293)
.+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|...++.......-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35567777888888888888766422 22211 2334555666777888888888887752111222 235778
Q ss_pred HHHHHHhcCChHHHHHHHHhC--------CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhc------CCchhhHH
Q 036775 186 VVDMYGRAGLLEEAEAFIREM--------PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKK------GVSVGTFA 250 (293)
Q Consensus 186 l~~~~~~~g~~~~a~~~~~~~--------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~ 250 (293)
+..+|...|++++|...|++. ...+. ..++..+...|...|++++|...+++..+.. ..-..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888888776 11122 2267777788888999999988888777643 11256789
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHH
Q 036775 251 LMSNTFAGADR-WEDANKIRDEIRR 274 (293)
Q Consensus 251 ~li~~~~~~g~-~~~a~~~~~~m~~ 274 (293)
.+..++.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999994 6999999887654
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.00 E-value=3.7e-08 Score=77.19 Aligned_cols=160 Identities=11% Similarity=-0.057 Sum_probs=109.1
Q ss_pred HHHHHhcccCcchHHHHHHHHHHhhcCCCCchh----HHHHHHHHHHHcCCHHHHHHHHHHhhhC-----Cc----ccHH
Q 036775 47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNL----VGNAVINMYVKCGDVGIAIQVFNMLAYK-----DM----ISWS 113 (293)
Q Consensus 47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~----~~~~ 113 (293)
..+..+...|++++|..+++...+.....|+.. .+..+...+...|++++|+..|++..+. +. .+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 345667778888888888888776333334422 3345666777777888888888877652 21 2577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCc-HhHHHHHHHHHhcCCChhHHHHHHHHhhhhc---CCCcc-hhHH
Q 036775 114 TVISGLAMNGCGRQALQLFSLMII----N-GVFPD-DVTFIALISACSHGGLVDQGLILFKAMSTVY---EIVPQ-TQHY 183 (293)
Q Consensus 114 ~li~~~~~~~~~~~a~~~~~~m~~----~-g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~ 183 (293)
.+..+|...|++++|...|+++.+ . +..+. ..++..+...|.+.|++++|...+++..+.. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888888888888888888888763 1 12222 2477788888888888888888888776521 11122 4678
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHhC
Q 036775 184 ACVVDMYGRAGL-LEEAEAFIREM 206 (293)
Q Consensus 184 ~~l~~~~~~~g~-~~~a~~~~~~~ 206 (293)
..+..+|.+.|+ +++|...+++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHH
Confidence 888888888884 58887777665
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.98 E-value=8e-08 Score=75.29 Aligned_cols=165 Identities=11% Similarity=-0.028 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch----hHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----C----
Q 036775 42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN----LVGNAVINMYVKCGDVGIAIQVFNMLAYK-----D---- 108 (293)
Q Consensus 42 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~---- 108 (293)
...+...+..+...|++++|.+.+....+.....++. ..+..+...+...|++++|+..+++..+. +
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 4455566777778888888888887776621111111 22345666777788888888888877632 2
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCC--cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhc---CCCc-
Q 036775 109 MISWSTVISGLAMNGCGRQALQLFSLMII---N-GVFP--DDVTFIALISACSHGGLVDQGLILFKAMSTVY---EIVP- 178 (293)
Q Consensus 109 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~-g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~- 178 (293)
..+|+.+...|...|++++|...|++..+ . +..+ ...++..+...|...|++++|...+++..+.. +...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 23677888888888888888888888762 1 1111 12577888888889999999998888876521 1111
Q ss_pred chhHHHHHHHHHHhcCChHHH-HHHHHhC
Q 036775 179 QTQHYACVVDMYGRAGLLEEA-EAFIREM 206 (293)
Q Consensus 179 ~~~~~~~l~~~~~~~g~~~~a-~~~~~~~ 206 (293)
-..+|..+..+|.+.|++++| ...+++.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 156778888889999988888 6656554
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.95 E-value=2.5e-09 Score=83.36 Aligned_cols=188 Identities=10% Similarity=-0.085 Sum_probs=102.1
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHhhh--C-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHH
Q 036775 77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAY--K-DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153 (293)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 153 (293)
+...+..+...+.+.|++++|+..|++..+ | +...|..+..++.+.|++++|...+++..+.... +...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 344555666666777777777777766654 2 4455666667777777777777777776655332 45666666777
Q ss_pred HhcCCChhHHHHHHHHhhhhcCCCcch-hHHHHHHH---HHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChh
Q 036775 154 CSHGGLVDQGLILFKAMSTVYEIVPQT-QHYACVVD---MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229 (293)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (293)
+...|++++|...|+...+.. |+. ..+...+. ...+...+.. ........+..... .+..+ ..|+.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~-~l~~l-~~~~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHS-YLTRL-IAAERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHH-HHHHH-HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHH-HHHHH-HHHHHH
Confidence 777777777777777665421 211 01111111 1111111111 11112122222222 22222 256667
Q ss_pred hchHHHHHHHhhcCCchhhHHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 036775 230 MFDPIRQELVNKKGVSVGTFALMSNTFAGA-DRWEDANKIRDEIRR 274 (293)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~ 274 (293)
.|...++...+..|.+......+...+.+. +++++|.++|.+..+
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777766666666666655555555555554 667778888876654
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.93 E-value=3e-08 Score=77.29 Aligned_cols=190 Identities=5% Similarity=-0.108 Sum_probs=129.8
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 83 (293)
.+...+..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++...+ ..+.+...+..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~ 77 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFF 77 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 356778888999999999999999999998853 44677888899999999999999999999987 45567788899
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775 84 VINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160 (293)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 160 (293)
+..+|...|++++|...|++..+. +...+...+....+.. ++. -+..........+..... .+..+ ..|+.
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~i~~-~l~~l-~~~~~ 151 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA---KKK-RWNSIEERRIHQESELHS-YLTRL-IAAER 151 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH---HHH-HHHHHHHTCCCCCCHHHH-HHHHH-HHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH---HHH-HHHHHHHHHHhhhHHHHH-HHHHH-HHHHH
Confidence 999999999999999999988643 2222222222222111 111 112222233333333333 33333 26888
Q ss_pred hHHHHHHHHhhhhcCCCcc-hhHHHHHHHHHHhc-CChHHHHHHHHhC
Q 036775 161 DQGLILFKAMSTVYEIVPQ-TQHYACVVDMYGRA-GLLEEAEAFIREM 206 (293)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~a~~~~~~~ 206 (293)
++|.+.++...+ . .|+ ......+...+.+. +.+++|.++|...
T Consensus 152 ~~A~~~~~~al~--~-~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 152 ERELEECQRNHE--G-HEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHHTTTSGGGT--T-TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhc--c-ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 899888888775 2 344 33444454455554 6788999999876
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.92 E-value=4.3e-08 Score=65.71 Aligned_cols=98 Identities=16% Similarity=0.099 Sum_probs=60.4
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
+...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+ ..+.+..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l 83 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHH
Confidence 35566667777777777777777777766542 33455566666666666666666666666655 233445555566
Q ss_pred HHHHHHcCCHHHHHHHHHHhhh
Q 036775 85 INMYVKCGDVGIAIQVFNMLAY 106 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~ 106 (293)
...+...|++++|...|+++.+
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 6666666666666666665543
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.92 E-value=3.3e-08 Score=70.12 Aligned_cols=128 Identities=7% Similarity=-0.092 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHH
Q 036775 145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNAC 222 (293)
Q Consensus 145 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 222 (293)
..+..+...+...|++++|...++...+. .+.+...+..+..++...|++++|...+++. ...| +...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555555666667777777777666642 2334556666677777777777777777665 2223 344666666677
Q ss_pred HhcCChhhchHHHHHHHhhcCCchhhHHHHHHH--HhcCCCHHHHHHHHHHHHH
Q 036775 223 RIHRNDEMFDPIRQELVNKKGVSVGTFALMSNT--FAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~ 274 (293)
...|+++.|...+++..+..|.+...+..+..+ +...|++++|.+.+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 777777777777777777776666666443333 6677888888888876543
No 124
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.91 E-value=4.3e-08 Score=72.08 Aligned_cols=127 Identities=13% Similarity=-0.028 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhh------C---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC--cH
Q 036775 80 VGNAVINMYVKCGDVGIAIQVFNMLAY------K---DMISWSTVISGLAMNGCGRQALQLFSLMIIN----GVFP--DD 144 (293)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p--~~ 144 (293)
++..+...+...|++++|...+++..+ . ...++..+...+...|++++|...+++..+. +..| ..
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 334444444444444444444444332 0 1223444444455555555555555444321 1111 12
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc----hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----TQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 145 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
..+..+...+...|++++|...+++......-..+ ..++..+...+...|++++|.+.+++.
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444555555556666665555554431100011 123345555555566666655555443
No 125
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.89 E-value=1e-07 Score=82.77 Aligned_cols=214 Identities=7% Similarity=-0.088 Sum_probs=162.9
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHH-HHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 036775 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI-QVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLM 135 (293)
Q Consensus 60 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m 135 (293)
.+..+|++... ..+-...+|...+..+.+.|+.++|. ++|++.... +...|...+....+.|++++|.++|+++
T Consensus 327 Rv~~~Ye~aL~--~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQ--HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHH--HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34567888777 46667888888888888999999996 999988753 4445777888888999999999999998
Q ss_pred HhCCC---------CCc------------HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc-
Q 036775 136 IINGV---------FPD------------DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA- 193 (293)
Q Consensus 136 ~~~g~---------~p~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 193 (293)
.+... .|+ ...|...+....+.|..+.|..+|....+. ........|...+..-.+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhC
Confidence 86410 132 346888888888899999999999999862 1112233444433333444
Q ss_pred CChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCC---chhhHHHHHHHHhcCCCHHHHHHH
Q 036775 194 GLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV---SVGTFALMSNTFAGADRWEDANKI 268 (293)
Q Consensus 194 g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~ 268 (293)
++.+.|..+|+.. ...| +...|...+......|+.+.|..+|++.....++ ....|...+.--.+.|+.+.+.++
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4589999999988 2223 4445667777778889999999999999988763 456788889888999999999999
Q ss_pred HHHHHHcC
Q 036775 269 RDEIRRMG 276 (293)
Q Consensus 269 ~~~m~~~~ 276 (293)
.+++.+.-
T Consensus 564 ~~R~~~~~ 571 (679)
T 4e6h_A 564 EKRFFEKF 571 (679)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 99998753
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.88 E-value=3.5e-06 Score=66.83 Aligned_cols=174 Identities=10% Similarity=-0.036 Sum_probs=111.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccC-cchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHc-C
Q 036775 15 GYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC-G 92 (293)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 92 (293)
...+.+..++|+++++.+...+ +-+...|+.--.++...+ .++++.++++.+.. ..|.+..+|+.-...+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--~nPKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--QNLKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcC
Confidence 3344455567888888887742 333445666555555666 47888888888876 5566677777666666665 6
Q ss_pred -CHHHHHHHHHHhhhCCc---ccHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC-
Q 036775 93 -DVGIAIQVFNMLAYKDM---ISWSTVISGLAMNGCGR--------QALQLFSLMIINGVFPDDVTFIALISACSHGGL- 159 (293)
Q Consensus 93 -~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~- 159 (293)
++++++++++++.+.|. .+|+.-.-++.+.|.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 77888888888876544 44554444444444444 777777777776554 66777777666666665
Q ss_pred ------hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC
Q 036775 160 ------VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL 195 (293)
Q Consensus 160 ------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 195 (293)
++++++.+++... -.+-|...|+.+-..+.+.|+
T Consensus 218 ~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCC
Confidence 5677777777665 224455666666656655554
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.88 E-value=7.6e-08 Score=68.22 Aligned_cols=125 Identities=9% Similarity=-0.086 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN 86 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (293)
..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+ ..+.+...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence 345555566666677777777666665542 33455555566666666666666666666655 23334455555555
Q ss_pred HHHHcCCHHHHHHHHHHhhhC---CcccHHH--HHHHHHhcCCHHHHHHHHHHH
Q 036775 87 MYVKCGDVGIAIQVFNMLAYK---DMISWST--VISGLAMNGCGRQALQLFSLM 135 (293)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~--li~~~~~~~~~~~a~~~~~~m 135 (293)
++...|++++|.+.|++..+. +...+.. +...+...|++++|.+.+...
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666666555432 2222211 222244445555555555443
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.87 E-value=7.8e-08 Score=65.36 Aligned_cols=114 Identities=7% Similarity=-0.116 Sum_probs=73.7
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 83 (293)
.+...|..+...+...|++++|++.|++..+. .+.+...+..+..++...|++++|...++...+ ..+.+...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~ 89 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ--LEPTFIKGYTR 89 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCchHHHHH
Confidence 35666777777777777777777777777664 233556666677777777777777777777766 23445566666
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHh
Q 036775 84 VINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAM 121 (293)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~ 121 (293)
+..++.+.|++++|.+.|++..+. +...+..+..++..
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 777777777777777777666542 23344444444443
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.86 E-value=1.9e-08 Score=70.45 Aligned_cols=96 Identities=10% Similarity=-0.038 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHh
Q 036775 180 TQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFA 257 (293)
Q Consensus 180 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 257 (293)
...+..+...+.+.|++++|...|++. ...| +...|..+..+|...|++++|...|++..+..|.++..|..+..+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 345666777777777777777777777 3334 45567777777777888888888888887777777778888888888
Q ss_pred cCCCHHHHHHHHHHHHHc
Q 036775 258 GADRWEDANKIRDEIRRM 275 (293)
Q Consensus 258 ~~g~~~~a~~~~~~m~~~ 275 (293)
..|++++|.+.|++..+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888777663
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.85 E-value=5.9e-08 Score=65.04 Aligned_cols=109 Identities=13% Similarity=0.106 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CchHhHHHHHHHHHH
Q 036775 146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNACR 223 (293)
Q Consensus 146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~ 223 (293)
.+..+...+...|++++|.+.++++.+. .+.+..++..+...+...|++++|..+++++ .. ..+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 3444444444444444444444444431 1223334444444444455555554444444 11 112334444444455
Q ss_pred hcCChhhchHHHHHHHhhcCCchhhHHHHHHHH
Q 036775 224 IHRNDEMFDPIRQELVNKKGVSVGTFALMSNTF 256 (293)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 256 (293)
..|+++.|...++++.+..|.++..+..+...+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 555555555555555544444444444444333
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.85 E-value=6.6e-07 Score=70.97 Aligned_cols=227 Identities=11% Similarity=0.058 Sum_probs=161.4
Q ss_pred cccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcC-CHHHHHHHHHHhhhCC---cccHHHHHHHHHhc-C-CHH
Q 036775 53 SSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG-DVGIAIQVFNMLAYKD---MISWSTVISGLAMN-G-CGR 126 (293)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~-~-~~~ 126 (293)
.+.+..++|.++++.+.. -.|.+..+|+.--..+...| .+++++++++.+...+ ..+|+.-..++.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence 344455689999999987 44556667887777778888 5999999999998764 45666666666666 6 899
Q ss_pred HHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChh--------HHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC---
Q 036775 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVD--------QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL--- 195 (293)
Q Consensus 127 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 195 (293)
+++++++++.+...+ |-..|+.-...+.+.|.++ ++++.++++.+. .+-|...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcccccc
Confidence 999999999987655 7778777666666666666 899999999872 34577788888888888776
Q ss_pred ----hHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCCh--------------------hhchHHHHHHHhhc------C
Q 036775 196 ----LEEAEAFIREM-PIEA-EWSVWGALLNACRIHRND--------------------EMFDPIRQELVNKK------G 243 (293)
Q Consensus 196 ----~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------~ 243 (293)
++++++.+++. ...| |...|+-+-..+.+.|.. .....+...+.... .
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 67888888776 3344 555677666666655554 22333333333222 4
Q ss_pred CchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccce
Q 036775 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSW 285 (293)
Q Consensus 244 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 285 (293)
+++.....|+..|...|+.++|.++++.+.+ ...|-...||
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~dpir~~yw 340 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSS-EYDQMRAGYW 340 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGGGHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hhChHHHHHH
Confidence 6777889999999999999999999999864 3445444454
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.84 E-value=5.1e-08 Score=66.10 Aligned_cols=105 Identities=4% Similarity=-0.161 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHH
Q 036775 146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACR 223 (293)
Q Consensus 146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~ 223 (293)
.+......+.+.|++++|++.|++..+. .+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3444444555555555555555555431 1223444555555555555555555555544 2222 2334444444455
Q ss_pred hcCChhhchHHHHHHHhhcCCchhhHHHH
Q 036775 224 IHRNDEMFDPIRQELVNKKGVSVGTFALM 252 (293)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 252 (293)
..|++++|...|++..+..|.+...+..|
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 55555555555555555554444444443
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.84 E-value=8.5e-08 Score=64.98 Aligned_cols=94 Identities=7% Similarity=0.002 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhc
Q 036775 181 QHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG 258 (293)
Q Consensus 181 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 258 (293)
..+......|.+.|++++|+..|++. ...| +...|..+..++...|+++.|...+++..+..|.++..|..+..++..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 45556666677777777777776665 3333 344566666666677777777777777666666666667777777777
Q ss_pred CCCHHHHHHHHHHHHH
Q 036775 259 ADRWEDANKIRDEIRR 274 (293)
Q Consensus 259 ~g~~~~a~~~~~~m~~ 274 (293)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7777777777766655
No 134
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.83 E-value=8.7e-07 Score=73.21 Aligned_cols=190 Identities=11% Similarity=-0.076 Sum_probs=125.3
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCc--------------------ccHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCc
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYKDM--------------------ISWSTVISGLAMNGCGRQALQLFSLMIING-VFPD 143 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~--------------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~ 143 (293)
...+.+.|++++|++.|.++.+.+. .++..+...|...|++++|.+.+.++...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3445666777777777776654211 125667788888888888888887765421 1112
Q ss_pred H----hHHHHHHHHHhcCCChhHHHHHHHHhhhh---cCCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC-------CC
Q 036775 144 D----VTFIALISACSHGGLVDQGLILFKAMSTV---YEIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM-------PI 208 (293)
Q Consensus 144 ~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~ 208 (293)
. .+.+.+-..+...|+.+.+..+++..... .+..+ -..++..+...|...|++++|..++++. ..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 12223333345667888888888776542 12122 2456778888899999999998888776 11
Q ss_pred Cc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhc---CCc----hhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 209 EA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKK---GVS----VGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 209 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
.+ ...++..++..|...|+++.|..++++..... +.+ ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22 23467778888999999999999988776532 211 24567778888889999999888876644
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.82 E-value=7.4e-08 Score=65.46 Aligned_cols=59 Identities=10% Similarity=-0.093 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775 112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171 (293)
Q Consensus 112 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 171 (293)
|..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECI 77 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333444444444444444444444433211 33334444444444444444444444443
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.82 E-value=4.8e-08 Score=71.83 Aligned_cols=152 Identities=11% Similarity=-0.042 Sum_probs=83.6
Q ss_pred HHcCCHHHHHHHHHHhhh---CCcccHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-cHhHHHHHHHHHhcCCCh
Q 036775 89 VKCGDVGIAIQVFNMLAY---KDMISWSTVISGLAMNGCGRQALQLFSLMII----NGVFP-DDVTFIALISACSHGGLV 160 (293)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~~~~ 160 (293)
...|++++|.+.++.+.. ....++..+...+...|++++|...+++..+ .+..| ...++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345677777773332222 2344566677777777777777777777654 11111 234566666667777777
Q ss_pred hHHHHHHHHhhhhcCCCc-----chhHHHHHHHHHHhcCChHHHHHHHHhC------CCCch--HhHHHHHHHHHHhcCC
Q 036775 161 DQGLILFKAMSTVYEIVP-----QTQHYACVVDMYGRAGLLEEAEAFIREM------PIEAE--WSVWGALLNACRIHRN 227 (293)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~------~~~~~--~~~~~~l~~~~~~~~~ 227 (293)
++|...+++..+...-.+ ....+..+...+...|++++|...+++. ...+. ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 777777776654211111 1234566666777777777777766655 00111 1233445555666666
Q ss_pred hhhchHHHHHHHh
Q 036775 228 DEMFDPIRQELVN 240 (293)
Q Consensus 228 ~~~a~~~~~~~~~ 240 (293)
++.|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655544
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.82 E-value=2e-08 Score=70.27 Aligned_cols=99 Identities=7% Similarity=-0.120 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHH
Q 036775 145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNAC 222 (293)
Q Consensus 145 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 222 (293)
..+..+...+.+.|++++|...|+..... -+.+...|..+..+|...|++++|+..|++. ...| +...+..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34444445555555555555555555531 1234444555555555555555555555554 2222 233444455555
Q ss_pred HhcCChhhchHHHHHHHhhcCCc
Q 036775 223 RIHRNDEMFDPIRQELVNKKGVS 245 (293)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~~~~ 245 (293)
...|++++|...+++..+..|.+
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHHCcCC
Confidence 55555555555555555544433
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.81 E-value=8.1e-08 Score=67.21 Aligned_cols=119 Identities=8% Similarity=-0.016 Sum_probs=93.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch-HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036775 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINM 87 (293)
Q Consensus 9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 87 (293)
++.+.+.+...+-+ ++... ..|+ ...+..+...+.+.|++++|...|+.+.+ -.|.+...|..+..+
T Consensus 12 ~~~l~~~~~~~~~l-------~~al~---l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~ 79 (151)
T 3gyz_A 12 STAVIDAINSGATL-------KDINA---IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAI 79 (151)
T ss_dssp HHHHHHHHHTSCCT-------GGGCC---SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCH-------HHHhC---CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 34455555444443 33333 3444 55777788889999999999999999987 456678888999999
Q ss_pred HHHcCCHHHHHHHHHHhhh--C-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036775 88 YVKCGDVGIAIQVFNMLAY--K-DMISWSTVISGLAMNGCGRQALQLFSLMIING 139 (293)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 139 (293)
|...|++++|+..|++..+ | +...|..+..+|...|++++|...|++..+..
T Consensus 80 ~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 80 YQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998875 3 67789999999999999999999999998764
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.81 E-value=1.1e-07 Score=73.09 Aligned_cols=121 Identities=7% Similarity=-0.114 Sum_probs=56.8
Q ss_pred HHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCch----HhHHHHHHHHHHhcC
Q 036775 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE----WSVWGALLNACRIHR 226 (293)
Q Consensus 151 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~l~~~~~~~~ 226 (293)
...+...|++++|.++|+.+.. + .|+......+...+.+.+++++|+..|+.....|+ ...+..+..++...|
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~--~-~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPV--A-GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCC--T-TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHh--c-CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC
Confidence 3344455555555555555543 1 12222333444455555555555555554422221 123444444455555
Q ss_pred ChhhchHHHHHHHhhcC-C--chhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 227 NDEMFDPIRQELVNKKG-V--SVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 227 ~~~~a~~~~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
++++|...|++...+.. | .+........++.+.|+.++|..+|+++..
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555543321 2 223344445555555555555555555554
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.81 E-value=6.5e-08 Score=65.41 Aligned_cols=115 Identities=5% Similarity=-0.102 Sum_probs=56.1
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHH
Q 036775 145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNAC 222 (293)
Q Consensus 145 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 222 (293)
..+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|...+++. ...| +...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34444444445555555555555554431 1223344445555555555555555555544 1122 233444445555
Q ss_pred HhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCC
Q 036775 223 RIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADR 261 (293)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (293)
...|+++.|...+++..+..|.+...+..+..++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555544443
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.80 E-value=6.5e-08 Score=67.57 Aligned_cols=94 Identities=11% Similarity=-0.066 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 036775 78 NLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154 (293)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 154 (293)
...+..+...+.+.|++++|+..|++.... +...|..+..++...|++++|...|++....... +...+..+..++
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 344455555566666666666666655432 3445555555666666666666666665554322 344555555566
Q ss_pred hcCCChhHHHHHHHHhhh
Q 036775 155 SHGGLVDQGLILFKAMST 172 (293)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~ 172 (293)
...|++++|...|+...+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665554
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.80 E-value=3.9e-08 Score=70.83 Aligned_cols=122 Identities=12% Similarity=0.102 Sum_probs=66.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHH-HHhcCCh--H
Q 036775 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDM-YGRAGLL--E 197 (293)
Q Consensus 121 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 197 (293)
..|++++|...+++..+... .+...+..+...+...|++++|...|+...+.. +.+...+..+..+ |...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 44566666666666555432 245556666666666666666666666665421 2244455555555 5556665 6
Q ss_pred HHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCc
Q 036775 198 EAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS 245 (293)
Q Consensus 198 ~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 245 (293)
+|...+++. ...| +...+..+...+...|+++.|...+++..+..|.+
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 666666655 2223 23445555555666666666666666666555544
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.80 E-value=1.2e-07 Score=64.06 Aligned_cols=97 Identities=9% Similarity=-0.096 Sum_probs=48.2
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
+...|..+...+...|++++|+..|++.... .+.+...+..+..++...|++++|...++...+ ..+.+...+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~ 86 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC--IDPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh--cCccCHHHHHHH
Confidence 3444555555555556666666665555543 122344444555555555555555555555544 122334444444
Q ss_pred HHHHHHcCCHHHHHHHHHHhh
Q 036775 85 INMYVKCGDVGIAIQVFNMLA 105 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~ 105 (293)
...+...|++++|...|++..
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 445555555555555554443
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.77 E-value=8.2e-08 Score=73.72 Aligned_cols=182 Identities=8% Similarity=-0.116 Sum_probs=89.9
Q ss_pred HcCCHHHHHHHHHHHHHccCCCchHHHHHHH-------HHHhcccCcchHHHHHHHHHHhhcCCCCchh-----------
Q 036775 18 ERGFCEEAVSVFQEMEKTKEAEPNEATLVNV-------LSACSSISALSFGQYVHSYISTRYDLSVSNL----------- 79 (293)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------- 79 (293)
..++...|.+.|.+..... +-....|..+ ..++.+.++..++...+.... ++.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l---~l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV---QISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT---TCCGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh---cCChhhhhhhhccCCccc
Confidence 5677788888888877742 3335566655 344444444444444444332 2333211
Q ss_pred -----------HHHHHHHHHHHcCCHHHHHHHHHHhhhC--CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--H
Q 036775 80 -----------VGNAVINMYVKCGDVGIAIQVFNMLAYK--DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPD--D 144 (293)
Q Consensus 80 -----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~ 144 (293)
....+...+...|++++|.++|+.+... +......+...+.+.+++++|+..|+...... .|. .
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1123445555566666666666555432 11133444445555566666666665333211 110 1
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc--hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ--TQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 145 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
..+..+-.++.+.|++++|+..|++... ....|. .........++.+.|+.++|..+|+++
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2444455555556666666666665543 221132 223444455555556666666665555
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.77 E-value=6.3e-09 Score=76.61 Aligned_cols=169 Identities=5% Similarity=-0.126 Sum_probs=81.8
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChh
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 161 (293)
+......|+++++.+.++.-.+. ....+..+...+...|++++|...|++..+.... +. .+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~-~~~~~----------- 77 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TE-EWDDQ----------- 77 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CT-TCCCH-----------
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-cc-ccchh-----------
Confidence 34444455555555555432221 3344556666666667777777777666653211 10 00000
Q ss_pred HHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHH
Q 036775 162 QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELV 239 (293)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (293)
....-.. ......+..+..+|...|++++|+..+++. ...| +...+..+..++...|+++.|...+++..
T Consensus 78 ----~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 78 ----ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp ----HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ----hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 0000000 001245556666666677777777666665 2223 34456666666777777777777777777
Q ss_pred hhcCCchhhHHHHHHHHhcCCCHHHHH-HHHHHHHH
Q 036775 240 NKKGVSVGTFALMSNTFAGADRWEDAN-KIRDEIRR 274 (293)
Q Consensus 240 ~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~ 274 (293)
+..|.+...+..+..++...++.+++. ..+..|..
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777767777777777777766666666 44554443
No 146
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.76 E-value=3.2e-07 Score=75.80 Aligned_cols=194 Identities=8% Similarity=-0.094 Sum_probs=140.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCch---------------HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc
Q 036775 13 IGGYAERGFCEEAVSVFQEMEKTKEAEPN---------------EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS 77 (293)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 77 (293)
...+.+.|++++|++.|..+.+......+ ...+..+...|...|++++|.+.+..+.+..+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 35678899999999999999875311111 124677888999999999999999988774333333
Q ss_pred hh----HHHHHHHHHHHcCCHHHHHHHHHHhhhC-----C----cccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 036775 78 NL----VGNAVINMYVKCGDVGIAIQVFNMLAYK-----D----MISWSTVISGLAMNGCGRQALQLFSLMIIN----GV 140 (293)
Q Consensus 78 ~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~ 140 (293)
.. +.+.+...+...|+.++|..+++..... + ..++..+...+...|++++|..++.++... +-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 2334444555668999999999887632 2 236778899999999999999999987643 11
Q ss_pred CC-cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhc---CCCcc--hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 141 FP-DDVTFIALISACSHGGLVDQGLILFKAMSTVY---EIVPQ--TQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 141 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
.| ...++..++..|...|++++|..+++...... +.++. ...+..+...+...|++++|...|.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22 24578889999999999999999998876522 11111 245667777888899999998877655
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.76 E-value=2.2e-07 Score=66.79 Aligned_cols=117 Identities=7% Similarity=-0.055 Sum_probs=66.7
Q ss_pred cccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh--C-CcccHHHHHHH-HHhcCCH--H
Q 036775 53 SSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--K-DMISWSTVISG-LAMNGCG--R 126 (293)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~-~~~~~~~--~ 126 (293)
...|++++|...++...+ ..+.+...+..+...|...|++++|...|++..+ | +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 345566666666666555 2344555666666666666666666666666553 2 34455555555 5566666 6
Q ss_pred HHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST 172 (293)
Q Consensus 127 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 172 (293)
+|...|++..+.... +...+..+...+...|++++|...++.+.+
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 666666666654322 345555666666666666666666666654
No 148
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.76 E-value=9.2e-06 Score=68.33 Aligned_cols=86 Identities=10% Similarity=-0.160 Sum_probs=41.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCc--hHhHHHHHHHH-HHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCC
Q 036775 185 CVVDMYGRAGLLEEAEAFIREMPIEA--EWSVWGALLNA-CRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADR 261 (293)
Q Consensus 185 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (293)
..+..+.+.+..+.|..+|++.. .| +...|...... +...++.+.|..+|+...+..|.++..+...+....+.|+
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~ 369 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIELG-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD 369 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhh-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Confidence 33333444556666777776662 22 12222221111 1223356667777766666555444444444444444555
Q ss_pred HHHHHHHHHH
Q 036775 262 WEDANKIRDE 271 (293)
Q Consensus 262 ~~~a~~~~~~ 271 (293)
.+.|..+|+.
T Consensus 370 ~~~aR~l~er 379 (493)
T 2uy1_A 370 EENARALFKR 379 (493)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.75 E-value=1.2e-07 Score=75.89 Aligned_cols=92 Identities=7% Similarity=-0.117 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhc
Q 036775 181 QHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG 258 (293)
Q Consensus 181 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 258 (293)
..|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|+++.|...|++..+..|.+...+..+..++.+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 56666777777777777777777766 3233 445666677777777777777777777777777777777777777777
Q ss_pred CCCHHHH-HHHHHHH
Q 036775 259 ADRWEDA-NKIRDEI 272 (293)
Q Consensus 259 ~g~~~~a-~~~~~~m 272 (293)
.|++++| .+.++.|
T Consensus 277 ~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 277 IRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 7777777 3355544
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.74 E-value=1.6e-07 Score=75.14 Aligned_cols=127 Identities=9% Similarity=-0.143 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc---------------hhHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 036775 42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS---------------NLVGNAVINMYVKCGDVGIAIQVFNMLAY 106 (293)
Q Consensus 42 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (293)
...+..+...+.+.|++++|...|++..+ . .+.+ ..++..+..+|.+.|++++|+..|++..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~-~-~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVS-W-LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-H-hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444455555555555555555555544 1 1111 35667777777777777777777777664
Q ss_pred C---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHH-HHHHHHhh
Q 036775 107 K---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-LILFKAMS 171 (293)
Q Consensus 107 ~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~ 171 (293)
. +...|..+..++...|++++|...|++..+.... +...+..+..++.+.|+.++| ...++.|.
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 4456667777777777777777777777665332 455666677777777777766 34555554
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.69 E-value=1.8e-07 Score=64.75 Aligned_cols=99 Identities=11% Similarity=-0.084 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHH
Q 036775 146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACR 223 (293)
Q Consensus 146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~ 223 (293)
.+..+...+.+.|++++|...|+..... -+.+...|..+..+|...|++++|...|++. ...| +...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444444555555555555555555541 1223444555555555555555555555554 2222 2234444555555
Q ss_pred hcCChhhchHHHHHHHhhcCCch
Q 036775 224 IHRNDEMFDPIRQELVNKKGVSV 246 (293)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~ 246 (293)
..|+++.|...+++..+..|.++
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HcCCHHHHHHHHHHHHHhCCCCc
Confidence 55555555555555555444333
No 152
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.68 E-value=9.2e-06 Score=64.14 Aligned_cols=92 Identities=5% Similarity=-0.103 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcC--CHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCC-HHHHHHH
Q 036775 58 LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG--DVGIAIQVFNMLAYK---DMISWSTVISGLAMNGC-GRQALQL 131 (293)
Q Consensus 58 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~-~~~a~~~ 131 (293)
++++..+++.+.. ..|.+..+|+.-.-.+.+.+ .+++++.+++++.+. +..+|+.-.-++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~--~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 3445555555544 33444445544444444444 255555555555543 23344444444444444 3555555
Q ss_pred HHHHHhCCCCCcHhHHHHHHH
Q 036775 132 FSLMIINGVFPDDVTFIALIS 152 (293)
Q Consensus 132 ~~~m~~~g~~p~~~~~~~ll~ 152 (293)
++++.+..+. |...|+....
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ 187 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSC 187 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHH
T ss_pred HHHHHHHCCC-CHHHHHHHHH
Confidence 5555554433 4444443333
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.68 E-value=2.7e-07 Score=62.31 Aligned_cols=96 Identities=7% Similarity=-0.147 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHH
Q 036775 145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNAC 222 (293)
Q Consensus 145 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 222 (293)
..+......+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34445555555666666666666655541 1233455555555566666666665555555 2222 233455555555
Q ss_pred HhcCChhhchHHHHHHHhhc
Q 036775 223 RIHRNDEMFDPIRQELVNKK 242 (293)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~ 242 (293)
...|+++.|...+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 55555555555555555544
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.68 E-value=1.8e-07 Score=61.29 Aligned_cols=95 Identities=12% Similarity=0.002 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCC-chHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCC--chhhHHHHHHHH
Q 036775 181 QHYACVVDMYGRAGLLEEAEAFIREM-PIE-AEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV--SVGTFALMSNTF 256 (293)
Q Consensus 181 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~ 256 (293)
..+..+...+...|++++|...+++. ... .+...+..+...+...|+++.|...+++..+..|. +...+..+..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 34455555666666666666666555 212 23445555666666666677777777666666666 666777777777
Q ss_pred hcC-CCHHHHHHHHHHHHHc
Q 036775 257 AGA-DRWEDANKIRDEIRRM 275 (293)
Q Consensus 257 ~~~-g~~~~a~~~~~~m~~~ 275 (293)
... |++++|.+.+++....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 777 7777777777766553
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.67 E-value=4.4e-08 Score=72.00 Aligned_cols=119 Identities=8% Similarity=-0.092 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhC---Cc----------------ccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036775 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYK---DM----------------ISWSTVISGLAMNGCGRQALQLFSLMIING 139 (293)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 139 (293)
..+..+...+.+.|++++|...|++..+. +. .+|..+..++...|++++|+..+++..+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34556666777777777777777776642 22 456666677777777777777777766653
Q ss_pred CCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHH
Q 036775 140 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200 (293)
Q Consensus 140 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 200 (293)
. .+...+..+..++...|++++|...|+...+. .+.+...+..+..++...++.+++.
T Consensus 119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 25566666777777777777777777776652 1234455566666666555555544
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.67 E-value=4.7e-07 Score=62.61 Aligned_cols=94 Identities=10% Similarity=-0.218 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHH
Q 036775 43 ATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGL 119 (293)
Q Consensus 43 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~ 119 (293)
..+..+...+...|++++|...|+.... ..|.+...|..+..+|.+.|++++|+..|++..+. +...|..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3444445555666666666666666655 23445555566666666666666666666665532 444556666666
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 036775 120 AMNGCGRQALQLFSLMIIN 138 (293)
Q Consensus 120 ~~~~~~~~a~~~~~~m~~~ 138 (293)
...|++++|...|++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666543
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.66 E-value=6.3e-07 Score=63.57 Aligned_cols=94 Identities=11% Similarity=-0.083 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 036775 78 NLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154 (293)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 154 (293)
...+..+...+.+.|++++|+..|++..+. +...|..+..++.+.|++++|+..|++..+.... +...|..+..++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344455555566666666666666655432 3445555556666666666666666665554322 455555666666
Q ss_pred hcCCChhHHHHHHHHhhh
Q 036775 155 SHGGLVDQGLILFKAMST 172 (293)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~ 172 (293)
...|++++|...|++..+
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 666666666666666654
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.65 E-value=8.3e-07 Score=58.64 Aligned_cols=90 Identities=16% Similarity=-0.013 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHh
Q 036775 113 STVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR 192 (293)
Q Consensus 113 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (293)
..+...+...|++++|...|++....... +...+..+...+...|++++|...++...+. .+.+...+..+..++..
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHH
Confidence 33344444444444444444444433211 3333344444444444444444444444331 11123333334444444
Q ss_pred cCChHHHHHHHHh
Q 036775 193 AGLLEEAEAFIRE 205 (293)
Q Consensus 193 ~g~~~~a~~~~~~ 205 (293)
.|++++|...+++
T Consensus 85 ~~~~~~A~~~~~~ 97 (118)
T 1elw_A 85 LNRFEEAKRTYEE 97 (118)
T ss_dssp TTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHH
Confidence 4444444444433
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.65 E-value=8.8e-07 Score=60.55 Aligned_cols=98 Identities=6% Similarity=-0.193 Sum_probs=61.9
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 83 (293)
.+...|..+...+...|++++|+..|+...... +.+...+..+..++...|++++|...++...+ ..+.+...+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~ 82 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFF 82 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCchhHHHHHH
Confidence 456666667777777777777777777766642 33455666666666666677777666666665 22334555666
Q ss_pred HHHHHHHcCCHHHHHHHHHHhh
Q 036775 84 VINMYVKCGDVGIAIQVFNMLA 105 (293)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~ 105 (293)
+..++...|++++|...|++..
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666666666666666554
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.64 E-value=1.4e-06 Score=57.44 Aligned_cols=98 Identities=9% Similarity=-0.129 Sum_probs=62.9
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
+...|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...++...+ ..+.+...+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~ 78 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 44566667777777777777777777776642 33455666666666677777777777776665 233345555666
Q ss_pred HHHHHHcCCHHHHHHHHHHhhh
Q 036775 85 INMYVKCGDVGIAIQVFNMLAY 106 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~ 106 (293)
..++...|++++|.+.|++..+
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666666554
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.63 E-value=6.1e-07 Score=61.35 Aligned_cols=98 Identities=10% Similarity=-0.140 Sum_probs=52.8
Q ss_pred cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHH
Q 036775 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLN 220 (293)
Q Consensus 143 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~ 220 (293)
+...+..+...+...|++++|...|+...+. .+.+...+..+..+|...|++++|...+++. ...| +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4455555555666666666666666665541 1223445555555666666666666655555 2222 2334555555
Q ss_pred HHHhcCChhhchHHHHHHHhhc
Q 036775 221 ACRIHRNDEMFDPIRQELVNKK 242 (293)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~ 242 (293)
++...|+++.|...+++..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHC
Confidence 5555555555555555555444
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.62 E-value=4.8e-07 Score=59.24 Aligned_cols=98 Identities=9% Similarity=-0.074 Sum_probs=61.2
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC--chhHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSV--SNLVGN 82 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ 82 (293)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+ ..+. +...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVIN--VIEDEYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSCCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccchHHHHH
Confidence 45556666677777777777777777766642 33455566666666666677777666666655 2233 455556
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHhhh
Q 036775 83 AVINMYVKC-GDVGIAIQVFNMLAY 106 (293)
Q Consensus 83 ~l~~~~~~~-~~~~~A~~~~~~~~~ 106 (293)
.+..++.+. |++++|.+.+++...
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 666666666 666666666665554
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.62 E-value=7.4e-07 Score=60.35 Aligned_cols=57 Identities=9% Similarity=-0.046 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036775 80 VGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMI 136 (293)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 136 (293)
.+..|...+.+.|++++|++.|++..+. +...|+.+..+|...|++++|++.|++..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444555555555555555555554431 33344445555555555555555555544
No 164
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.60 E-value=1e-06 Score=61.71 Aligned_cols=99 Identities=10% Similarity=-0.097 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch----HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc----
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN----EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS---- 77 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 77 (293)
..++..+...+...|++++|+..+++........++ ..++..+...+...|++++|...++...+.....++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345666777777778888888877776553100011 124445555556666666666666555441110011
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHh
Q 036775 78 NLVGNAVINMYVKCGDVGIAIQVFNML 104 (293)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~ 104 (293)
..++..+...+...|++++|.+.+++.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 223344444455555555555555443
No 165
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.60 E-value=1.2e-06 Score=59.07 Aligned_cols=96 Identities=9% Similarity=-0.049 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI 85 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 85 (293)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...++...+ -.+.+...+..+.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHH
Confidence 4455566666666677777777776666542 33445555556666666666666666666555 2233444555555
Q ss_pred HHHHHcCCHHHHHHHHHHhh
Q 036775 86 NMYVKCGDVGIAIQVFNMLA 105 (293)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~ 105 (293)
.++...|++++|...|++..
T Consensus 80 ~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHH
Confidence 55555555555555555544
No 166
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.60 E-value=1.4e-05 Score=63.05 Aligned_cols=222 Identities=7% Similarity=-0.079 Sum_probs=152.9
Q ss_pred ccCcch-HHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCC----------HHHHHHHHHHhhhC---CcccHHHHHHHH
Q 036775 54 SISALS-FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD----------VGIAIQVFNMLAYK---DMISWSTVISGL 119 (293)
Q Consensus 54 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~---~~~~~~~li~~~ 119 (293)
+.|.++ +|.++.+.+.. -.|.+..+|+.--..+...+. +++++.+++.+... +..+|+.-..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 445544 67777777765 333344445443333332222 67888999888764 556777777777
Q ss_pred HhcC--CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC-hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc---
Q 036775 120 AMNG--CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL-VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA--- 193 (293)
Q Consensus 120 ~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 193 (293)
.+.+ ++++++++++++.+.... |-..|+.-...+...|. ++++++.++.+.+. -+-|...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhc
Confidence 7777 489999999999988665 78888887777788888 58999999999972 345677787776666655
Q ss_pred -----------CChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhc-----------CChhhchHHHHHHHhhcCCchhhH
Q 036775 194 -----------GLLEEAEAFIREM-PIEA-EWSVWGALLNACRIH-----------RNDEMFDPIRQELVNKKGVSVGTF 249 (293)
Q Consensus 194 -----------g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~ 249 (293)
+.++++++.++.. ...| |...|+-+-..+... +..+++...++++.+..|.+..++
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 4577888888877 3344 445565444444333 356788888999998888887666
Q ss_pred HHHHH---HHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775 250 ALMSN---TFAGADRWEDANKIRDEIRRMGLKKKTG 282 (293)
Q Consensus 250 ~~li~---~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 282 (293)
..++. +....|..+++...+.++++ +.|-..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~ 309 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRA 309 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchh
Confidence 55443 23357888999999999886 444443
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.60 E-value=1e-06 Score=62.47 Aligned_cols=98 Identities=9% Similarity=-0.084 Sum_probs=63.0
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
+...|..+...+.+.|++++|++.|++..+.. +.+...|..+..++...|++++|...++...+ -.+.+...+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 45566666677777777777777777776642 33455666666666677777777777776665 233445566666
Q ss_pred HHHHHHcCCHHHHHHHHHHhhh
Q 036775 85 INMYVKCGDVGIAIQVFNMLAY 106 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~ 106 (293)
..+|...|++++|...|++..+
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 6666666666666666666653
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=9.3e-07 Score=61.17 Aligned_cols=110 Identities=7% Similarity=-0.169 Sum_probs=64.5
Q ss_pred cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHH
Q 036775 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----TQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWG 216 (293)
Q Consensus 143 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~ 216 (293)
+...+..+...+...|++++|...|+...+ ..|+ ...+..+..+|...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 445566666666666677777766666654 1233 455556666666666666666666655 2222 344555
Q ss_pred HHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHH
Q 036775 217 ALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNT 255 (293)
Q Consensus 217 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 255 (293)
.+..++...|+++.|...+++..+..|.+...+..+...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 555566666666666666666666665555555544444
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=1.5e-06 Score=60.09 Aligned_cols=96 Identities=8% Similarity=-0.080 Sum_probs=55.7
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch----HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN----EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV 80 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (293)
+...+..+...+...|++++|++.|++..+. .|+ ...+..+..++...|++++|...++...+ ..+.+...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE--KDGGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTSCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCccCHHH
Confidence 4556666666667777777777777766653 343 34555555556666666666666666554 12334445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhh
Q 036775 81 GNAVINMYVKCGDVGIAIQVFNMLA 105 (293)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~ 105 (293)
+..+..++...|++++|...|++..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555555555554
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.55 E-value=5.5e-07 Score=60.45 Aligned_cols=93 Identities=8% Similarity=-0.122 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036775 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMY 88 (293)
Q Consensus 9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 88 (293)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...+++..+ -.|.+...+..+..+|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 3344445555666666666666655531 23444555555555555666666665555554 2233444555555555
Q ss_pred HHcCCHHHHHHHHHHhh
Q 036775 89 VKCGDVGIAIQVFNMLA 105 (293)
Q Consensus 89 ~~~~~~~~A~~~~~~~~ 105 (293)
.+.|++++|+..|++..
T Consensus 96 ~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 96 TNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555555544
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.51 E-value=5.2e-07 Score=60.53 Aligned_cols=93 Identities=10% Similarity=-0.086 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcC
Q 036775 182 HYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGA 259 (293)
Q Consensus 182 ~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 259 (293)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|+++.|...+++..+..|.++..+..+..++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3555677788888888888888887 3344 5557777777788888888888888888888888888888888899999
Q ss_pred CCHHHHHHHHHHHHH
Q 036775 260 DRWEDANKIRDEIRR 274 (293)
Q Consensus 260 g~~~~a~~~~~~m~~ 274 (293)
|++++|...+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998888765
No 172
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.50 E-value=1.7e-06 Score=60.66 Aligned_cols=129 Identities=12% Similarity=0.031 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc----hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCc-hHh
Q 036775 146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----TQHYACVVDMYGRAGLLEEAEAFIREM-------PIEA-EWS 213 (293)
Q Consensus 146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~-~~~ 213 (293)
++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|...+++. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444455555555555555544431100011 124455555566666666666655554 1001 122
Q ss_pred HHHHHHHHHHhcCChhhchHHHHHHHhhc------CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 214 VWGALLNACRIHRNDEMFDPIRQELVNKK------GVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 214 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
.+..+...+...|+++.|...+++..+.. +....++..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44555555666666666666666555432 11245677788888888899999888887655
No 173
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.50 E-value=2.9e-06 Score=57.41 Aligned_cols=91 Identities=9% Similarity=-0.095 Sum_probs=48.7
Q ss_pred HHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---Cc-------ccHHH
Q 036775 45 LVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DM-------ISWST 114 (293)
Q Consensus 45 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~-------~~~~~ 114 (293)
+..+...+.+.|++++|...|++..+ -.|.+...|..+..+|.+.|++++|++.+++..+. +. .+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34444445555555555555555544 22334445555566666666666666666555431 11 13444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 036775 115 VISGLAMNGCGRQALQLFSLMII 137 (293)
Q Consensus 115 li~~~~~~~~~~~a~~~~~~m~~ 137 (293)
+..++...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55556666666666666666554
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.49 E-value=1.9e-06 Score=58.07 Aligned_cols=25 Identities=4% Similarity=0.005 Sum_probs=10.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 036775 9 WTTMIGGYAERGFCEEAVSVFQEME 33 (293)
Q Consensus 9 y~~li~~~~~~~~~~~a~~~~~~m~ 33 (293)
|..+...+...|++++|+..|++..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~ 31 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAK 31 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3333333444444444444444433
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.49 E-value=7.5e-07 Score=60.09 Aligned_cols=94 Identities=11% Similarity=-0.038 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCC-Ccc----hhHHHHH
Q 036775 112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI-VPQ----TQHYACV 186 (293)
Q Consensus 112 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~~l 186 (293)
|..+...+...|++++|...|++..+... .+...+..+...+...|++++|...++...+...- .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 44445555555555555555555544321 13444455555555555555555555555431100 011 3344444
Q ss_pred HHHHHhcCChHHHHHHHHhC
Q 036775 187 VDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 187 ~~~~~~~g~~~~a~~~~~~~ 206 (293)
..+|...|++++|...|++.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHH
Confidence 44455555555555544444
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.46 E-value=1.2e-06 Score=59.18 Aligned_cols=100 Identities=13% Similarity=-0.001 Sum_probs=64.2
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhhcCCCcch---hHHHHHHHHHHhcCChHHHHHHHHhC-CCCch----HhHHHHHHH
Q 036775 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQT---QHYACVVDMYGRAGLLEEAEAFIREM-PIEAE----WSVWGALLN 220 (293)
Q Consensus 149 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~~l~~ 220 (293)
.+...+...|++++|...|+.+.+.. +.+. ..+..+..+|...|++++|...|++. ...|+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 44556667778888888777776521 2222 35666777777777777777777776 22232 345566666
Q ss_pred HHHhcCChhhchHHHHHHHhhcCCchhhHH
Q 036775 221 ACRIHRNDEMFDPIRQELVNKKGVSVGTFA 250 (293)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 250 (293)
++...|+++.|...++.+.+..|.++....
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 677777777777777777776665554433
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.41 E-value=5.8e-07 Score=75.37 Aligned_cols=86 Identities=9% Similarity=-0.139 Sum_probs=42.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChH
Q 036775 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLE 197 (293)
Q Consensus 118 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 197 (293)
.+.+.|++++|.+.|++..+.... +..++..+..++.+.|++++|.+.+++..+ -.+.+...+..+..+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 344455555555555555543221 344555555555555555555555555554 11223344555555555555555
Q ss_pred HHHHHHHhC
Q 036775 198 EAEAFIREM 206 (293)
Q Consensus 198 ~a~~~~~~~ 206 (293)
+|...|++.
T Consensus 92 eA~~~~~~a 100 (477)
T 1wao_1 92 AALRDYETV 100 (477)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.41 E-value=2.3e-06 Score=71.79 Aligned_cols=121 Identities=9% Similarity=-0.082 Sum_probs=96.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036775 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMY 88 (293)
Q Consensus 9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 88 (293)
|..+...+.+.|++++|++.|++..+. .+.+...|..+..++.+.|++++|...+++..+ ..+.+...+..+..+|
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASN 84 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 444445677889999999999999885 244578899999999999999999999999988 4556778889999999
Q ss_pred HHcCCHHHHHHHHHHhhhC---CcccHHHHHHH--HHhcCCHHHHHHHHH
Q 036775 89 VKCGDVGIAIQVFNMLAYK---DMISWSTVISG--LAMNGCGRQALQLFS 133 (293)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~--~~~~~~~~~a~~~~~ 133 (293)
.+.|++++|++.|++..+. +...+..+..+ +.+.|++++|.+.++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999998753 45566666666 888899999999998
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.41 E-value=4.5e-06 Score=56.25 Aligned_cols=99 Identities=13% Similarity=-0.060 Sum_probs=71.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH---hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc---hhHHH
Q 036775 111 SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD---VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ---TQHYA 184 (293)
Q Consensus 111 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ 184 (293)
.+..+...+...|++++|...|++..+.... +. ..+..+..++.+.|++++|...++...+.. +.+ ...+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~ 80 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLL 80 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHH
Confidence 3455667788888888888888888775332 22 467777778888888888888888887622 222 45677
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCchH
Q 036775 185 CVVDMYGRAGLLEEAEAFIREM-PIEAEW 212 (293)
Q Consensus 185 ~l~~~~~~~g~~~~a~~~~~~~-~~~~~~ 212 (293)
.+..+|...|++++|...|++. ...|+.
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 7888888888888888888877 333443
No 180
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.40 E-value=3.1e-06 Score=70.86 Aligned_cols=123 Identities=11% Similarity=-0.026 Sum_probs=98.1
Q ss_pred HHhcCCChhHHHHHHHHhhhhcC-----CCcc-hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCchHh-HHH
Q 036775 153 ACSHGGLVDQGLILFKAMSTVYE-----IVPQ-TQHYACVVDMYGRAGLLEEAEAFIREM---------PIEAEWS-VWG 216 (293)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~---------~~~~~~~-~~~ 216 (293)
.+...|++++|..++++..+... -.|+ ..+++.|..+|...|++++|+.++++. +..|+.. +++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35688999999999988765221 1233 468899999999999999999998876 3456654 789
Q ss_pred HHHHHHHhcCChhhchHHHHHHHhh-----cCCc---hhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775 217 ALLNACRIHRNDEMFDPIRQELVNK-----KGVS---VGTFALMSNTFAGADRWEDANKIRDEIRRM 275 (293)
Q Consensus 217 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 275 (293)
.|...|...|++++|..++++..+. ++.. ..+.+.+..++...+++++|..+|..+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887763 2333 345678888899999999999999999874
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.38 E-value=3.6e-06 Score=70.25 Aligned_cols=86 Identities=7% Similarity=-0.080 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhc
Q 036775 181 QHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG 258 (293)
Q Consensus 181 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 258 (293)
..|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|+++.|...|++..+..|.+...+..+..++.+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK 397 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44555555666666666666666555 2222 344555555556666666666666666666555555666666666666
Q ss_pred CCCHHHHH
Q 036775 259 ADRWEDAN 266 (293)
Q Consensus 259 ~g~~~~a~ 266 (293)
.|+++++.
T Consensus 398 ~~~~~~a~ 405 (457)
T 1kt0_A 398 AKEHNERD 405 (457)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655554
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.37 E-value=5.6e-06 Score=69.05 Aligned_cols=93 Identities=6% Similarity=-0.104 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 036775 78 NLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154 (293)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 154 (293)
..+|..+..+|.+.|++++|+..+++..+. +...|..+..+|...|++++|...|++..+.... +...+..+..++
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~ 395 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 355666667777777777777777766542 4455666667777777777777777776654322 445566666666
Q ss_pred hcCCChhHHH-HHHHHhh
Q 036775 155 SHGGLVDQGL-ILFKAMS 171 (293)
Q Consensus 155 ~~~~~~~~a~-~~~~~~~ 171 (293)
.+.++.+++. ..+..|.
T Consensus 396 ~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 396 KKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 6666666554 3344443
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.36 E-value=7.8e-06 Score=66.17 Aligned_cols=119 Identities=9% Similarity=-0.042 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhh----------------C---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 036775 80 VGNAVINMYVKCGDVGIAIQVFNMLAY----------------K---DMISWSTVISGLAMNGCGRQALQLFSLMIINGV 140 (293)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 140 (293)
.+..+...+.+.|++++|++.|++..+ . +..+|..+..++.+.|++++|++.+++..+...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 356677778888888888888877664 1 334566666677777777777777777666533
Q ss_pred CCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHH
Q 036775 141 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201 (293)
Q Consensus 141 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 201 (293)
. +...+..+..++...|++++|...|++..+. .+.+...+..+..++...++.+++.+
T Consensus 305 ~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 S-NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 4566666666677777777777777766652 12244455556666666665555543
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.35 E-value=1.4e-06 Score=57.91 Aligned_cols=83 Identities=12% Similarity=0.050 Sum_probs=40.1
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHH
Q 036775 122 NGCGRQALQLFSLMIING--VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199 (293)
Q Consensus 122 ~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 199 (293)
.|++++|+..|++..+.+ -+-+...+..+..++...|++++|...+++..+. .+-+...+..+..+|...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 345555555555555442 1112344555555555555555555555555541 122344455555555555555555
Q ss_pred HHHHHhC
Q 036775 200 EAFIREM 206 (293)
Q Consensus 200 ~~~~~~~ 206 (293)
...+++.
T Consensus 81 ~~~~~~a 87 (117)
T 3k9i_A 81 VELLLKI 87 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.34 E-value=4.1e-06 Score=58.32 Aligned_cols=61 Identities=10% Similarity=-0.069 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCChhhchHHHHHHHhh-------cCCchhhH----HHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 214 VWGALLNACRIHRNDEMFDPIRQELVNK-------KGVSVGTF----ALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 214 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
.|..+..++...|++++|...+++..+. .|.+...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666666677777777777777777776 77777788 8888888888888888888887755
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.34 E-value=5.9e-06 Score=69.15 Aligned_cols=121 Identities=6% Similarity=-0.175 Sum_probs=66.5
Q ss_pred hcccCcchHHHHHHHHHHhhc--CC----CCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----------CcccHHH
Q 036775 52 CSSISALSFGQYVHSYISTRY--DL----SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-----------DMISWST 114 (293)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~ 114 (293)
+...|++++|..++++..+.. -+ +....+++.|...|...|++++|+.++++..+. ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 335566666665555554411 11 112344566666666666666666666655421 1234666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----CCCC-Cc-HhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775 115 VISGLAMNGCGRQALQLFSLMII-----NGVF-PD-DVTFIALISACSHGGLVDQGLILFKAMST 172 (293)
Q Consensus 115 li~~~~~~~~~~~a~~~~~~m~~-----~g~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 172 (293)
|...|...|++++|+.++++..+ .|.. |+ ..+...+-.++...+.+++|+.++..+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666776666666666542 1221 22 23344444555566777777777777765
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.31 E-value=3.4e-06 Score=67.46 Aligned_cols=144 Identities=11% Similarity=-0.070 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN 86 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (293)
..|..+-..+.+.|++++|+..|++... ..|+...+ ...++..++...+ ....|..+..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~-------~~~~~~~~~~~~l-----------~~~~~~nla~ 238 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFMF-------QLYGKYQDMALAV-----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHHH-------TCCHHHHHHHHHH-----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccchhh-------hhcccHHHHHHHH-----------HHHHHHHHHH
Confidence 3455555666667777777777777665 33443311 1122222221111 0125677777
Q ss_pred HHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHH-HhcCCChhH
Q 036775 87 MYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA-CSHGGLVDQ 162 (293)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~ 162 (293)
+|.+.|++++|+..+++..+. +...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888777642 4556777778888888888888888887654321 33344444333 234456667
Q ss_pred HHHHHHHhhh
Q 036775 163 GLILFKAMST 172 (293)
Q Consensus 163 a~~~~~~~~~ 172 (293)
+...|..+..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 7777777764
No 188
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.31 E-value=0.00025 Score=59.69 Aligned_cols=203 Identities=11% Similarity=-0.050 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHH-HHH
Q 036775 23 EEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI-QVF 101 (293)
Q Consensus 23 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~ 101 (293)
+.+..+|+++... .+.++..|...+.-+.+.|+.+.|..++++... . |.+...+.. |+...+.++.. .+.
T Consensus 196 ~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~-~--P~~~~l~~~----y~~~~e~~~~~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE-M--SDGMFLSLY----YGLVMDEEAVYGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CCSSHHHHH----HHHHTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-C--CCcHHHHHH----HHhhcchhHHHHHHH
Confidence 4567788888775 456677888888888889999999999999998 3 555444432 22222212211 111
Q ss_pred HHhh------------hCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhc-CCChhHHHHHHH
Q 036775 102 NMLA------------YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH-GGLVDQGLILFK 168 (293)
Q Consensus 102 ~~~~------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~ 168 (293)
+... ......|...+....+.++.+.|..+|++. +. ...+...|......-.. .++.+.|..+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 1110 001245666777777788899999999998 32 12344444432222222 336999999999
Q ss_pred HhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (293)
...+.. +-+...+...++.....|+.+.|..+|++.. .....|...+.--...|+.+.+..++++..+
T Consensus 345 ~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 988733 2234456667787888999999999999983 3466788777777788999999988877764
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.31 E-value=1.2e-06 Score=58.37 Aligned_cols=92 Identities=10% Similarity=-0.050 Sum_probs=64.3
Q ss_pred cCCChhHHHHHHHHhhhhcC--CCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhc
Q 036775 156 HGGLVDQGLILFKAMSTVYE--IVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMF 231 (293)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a 231 (293)
..|++++|+..|++..+ .+ -+.+...+..+..+|...|++++|...|++. ...| +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 45788888888888875 22 1234567778888888888888888888887 3334 355677777778888888888
Q ss_pred hHHHHHHHhhcCCchhh
Q 036775 232 DPIRQELVNKKGVSVGT 248 (293)
Q Consensus 232 ~~~~~~~~~~~~~~~~~ 248 (293)
...+++.....|.++..
T Consensus 81 ~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 81 VELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHhCCCcHHH
Confidence 88888888777666543
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.29 E-value=6e-06 Score=58.29 Aligned_cols=104 Identities=13% Similarity=-0.041 Sum_probs=72.5
Q ss_pred cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC----------------CCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYE----------------IVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 143 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
....+......+.+.|++++|...|....+... .+.+...|..+..+|.+.|++++|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345677777788888888888888888876200 1122356777777777888888887777776
Q ss_pred -CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCch
Q 036775 207 -PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSV 246 (293)
Q Consensus 207 -~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 246 (293)
...| +...|..+..++...|+++.|...+++..+..|.+.
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 3334 345677777777778888888888877777777665
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.27 E-value=7.2e-06 Score=66.35 Aligned_cols=122 Identities=5% Similarity=-0.162 Sum_probs=88.8
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhhc--------------CCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-
Q 036775 147 FIALISACSHGGLVDQGLILFKAMSTVY--------------EIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA- 210 (293)
Q Consensus 147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~- 210 (293)
+..+...+.+.|++++|...|++..+.. ..+.+...|..+..+|.+.|++++|+..+++. ...|
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 4444445555555555555555554300 11224567888888999999999999999887 5555
Q ss_pred hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHH
Q 036775 211 EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKI 268 (293)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 268 (293)
+...|..+..+|...|++++|...+++..+..|.+...+..+..++...++.+++.+.
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557888888899999999999999999998888888888888888888877777553
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.26 E-value=1.4e-05 Score=55.65 Aligned_cols=90 Identities=11% Similarity=-0.050 Sum_probs=43.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCcc---------------cHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCC
Q 036775 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMI---------------SWSTVISGLAMNGCGRQALQLFSLMIIN-----GVF 141 (293)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~ 141 (293)
......+.+.|++++|+..|++..+-++. .|+.+..++.+.|++++|+..+++..+. .+.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 34445555556666666666655432111 4555555555555555555555555442 012
Q ss_pred C-cHhHH----HHHHHHHhcCCChhHHHHHHHHhh
Q 036775 142 P-DDVTF----IALISACSHGGLVDQGLILFKAMS 171 (293)
Q Consensus 142 p-~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~ 171 (293)
| +...| .....++...|++++|+..|+...
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 22333 444444445555555555554444
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.22 E-value=3.3e-06 Score=67.51 Aligned_cols=93 Identities=5% Similarity=-0.170 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHH-Hhc
Q 036775 182 HYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNT-FAG 258 (293)
Q Consensus 182 ~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~ 258 (293)
.|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|+++.|...|++..+..|.+...+..+... ...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 5666777777777777777777766 3333 445666677777777777777777777777666666666666655 334
Q ss_pred CCCHHHHHHHHHHHHH
Q 036775 259 ADRWEDANKIRDEIRR 274 (293)
Q Consensus 259 ~g~~~~a~~~~~~m~~ 274 (293)
.+..+++.+.|+.|..
T Consensus 312 ~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 312 KALYQKQKEMYKGIFK 327 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHhhC
Confidence 5566667777776654
No 194
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.19 E-value=5.3e-05 Score=53.33 Aligned_cols=108 Identities=11% Similarity=0.009 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC-----CCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKE-----AEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV 80 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (293)
...+...-..+.+.|++++|+..|.+....-. ..|+...+ .. ..+.+..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~-----~~~~~~~~ 65 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VE-----LDRKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HH-----HHHTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HH-----HHHHHHHH
Confidence 45577777888999999999999998876300 01111000 00 11233445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 036775 81 GNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIIN 138 (293)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 138 (293)
|..+..+|.+.|++++|+..+++..+. +...|..+..++...|++++|...|++....
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 566666666666666666666666542 3445666666666777777777777666654
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.15 E-value=0.00017 Score=61.70 Aligned_cols=168 Identities=9% Similarity=-0.086 Sum_probs=123.2
Q ss_pred HHHHHHHHHHhhhCCc---ccHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC--
Q 036775 94 VGIAIQVFNMLAYKDM---ISWSTVISGLAMNGC----------GRQALQLFSLMIINGVFPDDVTFIALISACSHGG-- 158 (293)
Q Consensus 94 ~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-- 158 (293)
.++|++.++++.+.++ .+|+.--.++...|+ ++++++.++++.+...+ +..+|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 4577888888776433 345555555555555 78888888888877655 6777877777777888
Q ss_pred ChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhc----------
Q 036775 159 LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAG-LLEEAEAFIREM-PIEA-EWSVWGALLNACRIH---------- 225 (293)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~---------- 225 (293)
+++++.+.++.+.+. -+-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 668888888888862 2446677877777777888 788888888887 4444 455676666655442
Q ss_pred ----CChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHH
Q 036775 226 ----RNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWED 264 (293)
Q Consensus 226 ----~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 264 (293)
+.++++...+++.....|.+...|..+-..+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 456888888988888899999999999888888887554
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.12 E-value=3.1e-06 Score=55.32 Aligned_cols=95 Identities=12% Similarity=0.047 Sum_probs=62.6
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc------
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS------ 77 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------ 77 (293)
++...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...++...+ ..+.+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 77 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIR 77 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHH
Confidence 356677778888888888888888888887752 44566777777778888888888888888765 22222
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHH
Q 036775 78 NLVGNAVINMYVKCGDVGIAIQVFN 102 (293)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~ 102 (293)
...+..+..++...|+.+.|.+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 3344455555555555554444433
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.09 E-value=7e-06 Score=53.60 Aligned_cols=59 Identities=15% Similarity=0.069 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775 112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171 (293)
Q Consensus 112 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 171 (293)
|..+...+...|++++|.+.|++..+.... +...+..+..++.+.|++++|...++...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 334444444444444444444444433221 33344444444444444444444444444
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.06 E-value=6e-05 Score=46.98 Aligned_cols=82 Identities=13% Similarity=0.050 Sum_probs=52.9
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+ ..+.+...+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l 83 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCHHHHHHH
Confidence 45567777777777788888887777776642 33455666666777777777777777777766 233344555555
Q ss_pred HHHHHH
Q 036775 85 INMYVK 90 (293)
Q Consensus 85 ~~~~~~ 90 (293)
...+.+
T Consensus 84 ~~~~~~ 89 (91)
T 1na3_A 84 GNAKQK 89 (91)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555443
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.03 E-value=0.00022 Score=61.04 Aligned_cols=174 Identities=7% Similarity=-0.070 Sum_probs=130.0
Q ss_pred HcCC-HHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCc----------chHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775 18 ERGF-CEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA----------LSFGQYVHSYISTRYDLSVSNLVGNAVIN 86 (293)
Q Consensus 18 ~~~~-~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (293)
+.|. .++|++.++++.... +-+...|+.--.++...++ ++++.+.++.+.+ ..|-+..+|+.-.-
T Consensus 40 ~~~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w 115 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCW 115 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 3444 567899999998853 3334566665555555555 8899999999987 56777888888888
Q ss_pred HHHHcC--CHHHHHHHHHHhhhC---CcccHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcC---
Q 036775 87 MYVKCG--DVGIAIQVFNMLAYK---DMISWSTVISGLAMNG-CGRQALQLFSLMIINGVFPDDVTFIALISACSHG--- 157 (293)
Q Consensus 87 ~~~~~~--~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--- 157 (293)
.+.+.+ +++++++.++++.+. +..+|+.-..++.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccc
Confidence 888888 779999999999875 5567877777788888 899999999999887665 777777776666552
Q ss_pred -----------CChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHH
Q 036775 158 -----------GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE 198 (293)
Q Consensus 158 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 198 (293)
+.++++.+.++..... .+-+...|..+...+.+.++.++
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 4578888888888762 24567788888888877777444
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.97 E-value=0.00033 Score=47.85 Aligned_cols=110 Identities=13% Similarity=-0.082 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHH----cCCHH
Q 036775 20 GFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK----CGDVG 95 (293)
Q Consensus 20 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 95 (293)
+++++|++.|++..+.| .|+.. +-..+...+.++.|.+.|+...+ . -+...+..|...|.. .++++
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHcCC--CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHH
Confidence 45666666666666554 22222 44445555556666666666655 2 234455555555655 55666
Q ss_pred HHHHHHHHhhhC-CcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 036775 96 IAIQVFNMLAYK-DMISWSTVISGLAM----NGCGRQALQLFSLMIING 139 (293)
Q Consensus 96 ~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g 139 (293)
+|.++|++..+. +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666666655543 44455555555555 556666666666555544
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.92 E-value=3.8e-05 Score=50.56 Aligned_cols=74 Identities=11% Similarity=-0.013 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036775 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMI 136 (293)
Q Consensus 61 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 136 (293)
+...++...+ ..+.+...+..+...|...|++++|+..|++..+. +...|..+..++...|++++|...|++..
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444433 22334444455555555555555555555544431 22334444444555555555555554443
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.92 E-value=5.7e-05 Score=47.09 Aligned_cols=76 Identities=13% Similarity=0.109 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHh
Q 036775 182 HYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFA 257 (293)
Q Consensus 182 ~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 257 (293)
.+..+...+...|++++|...+++. ...| +...+..+...+...|+++.|...+++..+..|.++..+..+..++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3444444555555555555555444 1112 23344444445555555555555555555555555555554444443
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.88 E-value=8.5e-05 Score=47.60 Aligned_cols=61 Identities=7% Similarity=-0.102 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775 180 TQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVN 240 (293)
Q Consensus 180 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (293)
...+..+..+|...|++++|+..|++. ...| +...|..+..+|...|++++|...+++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555555555555555554 2222 223445555555555555555555555444
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.85 E-value=6e-05 Score=49.60 Aligned_cols=81 Identities=9% Similarity=-0.018 Sum_probs=62.2
Q ss_pred hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHH
Q 036775 161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQEL 238 (293)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 238 (293)
+.|...|+...+ ..+.+...+..+...|...|++++|+..|++. ...| +...|..+..++...|+++.|...+++.
T Consensus 2 ~~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 457777887775 22445677888888999999999999999887 3334 4557778888888999999999999888
Q ss_pred HhhcC
Q 036775 239 VNKKG 243 (293)
Q Consensus 239 ~~~~~ 243 (293)
.+..|
T Consensus 80 l~~~~ 84 (115)
T 2kat_A 80 LAAAQ 84 (115)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 77553
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.85 E-value=7.6e-05 Score=47.83 Aligned_cols=60 Identities=12% Similarity=0.062 Sum_probs=31.2
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036775 77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMI 136 (293)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 136 (293)
+...+..+...|.+.|++++|+..|++..+. +...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555555555431 33445555555555555555555555543
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.81 E-value=0.00028 Score=48.24 Aligned_cols=109 Identities=8% Similarity=-0.101 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHh----cCChHHH
Q 036775 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR----AGLLEEA 199 (293)
Q Consensus 124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 199 (293)
++++|.+.|++..+.|. |+.. +-..|...+.+++|.+.|+...+ . .+...+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45555666665555542 2222 44444444555556666655554 2 234445555555555 4555555
Q ss_pred HHHHHhCCCCchHhHHHHHHHHHHh----cCChhhchHHHHHHHhh
Q 036775 200 EAFIREMPIEAEWSVWGALLNACRI----HRNDEMFDPIRQELVNK 241 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 241 (293)
..+|++.-...+...+..|...|.. .++.++|...+++..+.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555554111233333334444433 44444444444444443
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.75 E-value=0.0015 Score=52.01 Aligned_cols=72 Identities=10% Similarity=0.028 Sum_probs=43.4
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHH
Q 036775 108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184 (293)
Q Consensus 108 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 184 (293)
+..+|..+...+...|++++|...++++...+ |+...|..+-..+.-.|+.++|.+.+++..+. .|...+|.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL---~P~~~t~~ 347 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL---RPGANTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCSHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCcChHH
Confidence 44555555555555667777777777666654 56556656666666667777777776666542 34444443
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.70 E-value=2.5e-05 Score=54.28 Aligned_cols=88 Identities=13% Similarity=-0.075 Sum_probs=52.3
Q ss_pred hcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChH----------HHHHHHHhC-CCCch-HhHHHHHHHHH
Q 036775 155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLE----------EAEAFIREM-PIEAE-WSVWGALLNAC 222 (293)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~a~~~~~~~-~~~~~-~~~~~~l~~~~ 222 (293)
.+.+.+++|.+.++...+. -+.+...|..+..++...++++ +|+..|++. .+.|+ ...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 3455677788888777752 2345667777777777776653 566666555 33443 33555565555
Q ss_pred HhcC-----------ChhhchHHHHHHHhhcCC
Q 036775 223 RIHR-----------NDEMFDPIRQELVNKKGV 244 (293)
Q Consensus 223 ~~~~-----------~~~~a~~~~~~~~~~~~~ 244 (293)
...| ++++|...|++..+..|.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 5443 566666666666555554
No 209
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.67 E-value=0.0031 Score=41.95 Aligned_cols=84 Identities=15% Similarity=0.106 Sum_probs=64.7
Q ss_pred cCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775 193 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEI 272 (293)
Q Consensus 193 ~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 272 (293)
+|++......+-.++ .+....+.-+......|.-+.-.+++..+....++++.....+..+|.+.|+..+|.+++++.
T Consensus 74 C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 344444444444443 233445667777889999999999999887778889999999999999999999999999999
Q ss_pred HHcCCC
Q 036775 273 RRMGLK 278 (293)
Q Consensus 273 ~~~~~~ 278 (293)
.+.|++
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 998875
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.62 E-value=0.00017 Score=59.37 Aligned_cols=82 Identities=7% Similarity=-0.024 Sum_probs=60.7
Q ss_pred cCChHHHHHHHHhC---------CCCchH-hHHHHHHHHHHhcCChhhchHHHHHHHhh-----cCC---chhhHHHHHH
Q 036775 193 AGLLEEAEAFIREM---------PIEAEW-SVWGALLNACRIHRNDEMFDPIRQELVNK-----KGV---SVGTFALMSN 254 (293)
Q Consensus 193 ~g~~~~a~~~~~~~---------~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~---~~~~~~~li~ 254 (293)
.|++++|+.++++. ...|+. .+++.|..+|...|++++|..++++..+. ++. ...+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46778888777665 234544 37888888888889999888888877753 122 2346888999
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q 036775 255 TFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 255 ~~~~~g~~~~a~~~~~~m~~ 274 (293)
.|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999998887644
No 211
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.52 E-value=0.00054 Score=47.58 Aligned_cols=85 Identities=11% Similarity=-0.035 Sum_probs=52.1
Q ss_pred HHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcch----------HHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775 17 AERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS----------FGQYVHSYISTRYDLSVSNLVGNAVIN 86 (293)
Q Consensus 17 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (293)
.+.+++++|++.++...+.. +.+...|..+..++...++++ +|...|++..+ -.|.+..+|..+..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence 45567788888888877753 445666666666766666544 66666666655 23334455666666
Q ss_pred HHHHcC-----------CHHHHHHHHHHhh
Q 036775 87 MYVKCG-----------DVGIAIQVFNMLA 105 (293)
Q Consensus 87 ~~~~~~-----------~~~~A~~~~~~~~ 105 (293)
+|...| ++++|++.|++..
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl 118 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAV 118 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHH
Confidence 666553 4555555555554
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.51 E-value=0.0006 Score=56.18 Aligned_cols=88 Identities=11% Similarity=-0.057 Sum_probs=60.0
Q ss_pred HHHHHhcCChHHHHHHHHhC---------CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhc-----CC---chhh
Q 036775 187 VDMYGRAGLLEEAEAFIREM---------PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKK-----GV---SVGT 248 (293)
Q Consensus 187 ~~~~~~~g~~~~a~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~---~~~~ 248 (293)
+..+.+.|++++|+.++++. ...|+ ..+++.+..+|...|++++|..++++..+.. +. ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44455677888888777655 12333 2367777777888888888888887766531 22 2345
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 249 FALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 249 ~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 78888888888888888888876543
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.43 E-value=0.00038 Score=57.31 Aligned_cols=61 Identities=11% Similarity=-0.128 Sum_probs=29.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCc-HhHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775 111 SWSTVISGLAMNGCGRQALQLFSLMIIN-----GV-FPD-DVTFIALISACSHGGLVDQGLILFKAMS 171 (293)
Q Consensus 111 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 171 (293)
+++.|..+|...|++++|+.++++..+. |. -|+ ..+++.+...|...|++++|..++++..
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3445555555555555555555544321 11 122 2345555555555566555555555544
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.35 E-value=0.002 Score=57.65 Aligned_cols=98 Identities=13% Similarity=0.019 Sum_probs=47.2
Q ss_pred HHcCCHHHHHH-HHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHH
Q 036775 89 VKCGDVGIAIQ-VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF 167 (293)
Q Consensus 89 ~~~~~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 167 (293)
...+++++|.+ ++..+. +......++..+.+.|.++.|+++.+. |. .-.......|+++.|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHHH
Confidence 34556666655 442221 011124455555556666665554421 10 0112233456666666554
Q ss_pred HHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036775 168 KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207 (293)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 207 (293)
+.+ .+...|..+...+.+.|+++.|.+.|.+++
T Consensus 676 ~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 676 TDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp TTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred Hhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 332 233456666666666666666666666654
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.34 E-value=0.002 Score=40.53 Aligned_cols=67 Identities=7% Similarity=0.008 Sum_probs=50.0
Q ss_pred chHhHHHHHHHHHHhcCC---hhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775 210 AEWSVWGALLNACRIHRN---DEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG 276 (293)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 276 (293)
.+...+..+..++...++ .+.|..++++..+..|.++.....+...+.+.|++++|...|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 345556666666533333 6788888888888888888888888888888888888888888887643
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.32 E-value=0.0009 Score=55.13 Aligned_cols=88 Identities=10% Similarity=0.007 Sum_probs=54.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhC-----------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCc-HhH
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYK-----------DMISWSTVISGLAMNGCGRQALQLFSLMIIN-----GV-FPD-DVT 146 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~-~~~ 146 (293)
+..+.+.|++++|+.++++..+. ...+++.+..+|...|++++|+.++++.... |. -|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33445566777777777666532 1235666777777777777777777766431 21 122 356
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775 147 FIALISACSHGGLVDQGLILFKAMST 172 (293)
Q Consensus 147 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 172 (293)
++.+...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777777777777777777776654
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.30 E-value=0.0047 Score=55.22 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=100.1
Q ss_pred HHHHHcCCHHHHHH-HHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcC
Q 036775 14 GGYAERGFCEEAVS-VFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG 92 (293)
Q Consensus 14 ~~~~~~~~~~~a~~-~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 92 (293)
......+++++|.+ ++.. ++ +......++..+.+.|..+.|.++.+... .-.......|
T Consensus 607 ~~~~~~~~~~~a~~~~l~~------i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~-------------~~f~~~l~~~ 666 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN------VE-GKDSLTKIARFLEGQEYYEEALNISPDQD-------------QKFELALKVG 666 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG------CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH-------------HHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhc------CC-chHHHHHHHHHHHhCCChHHheecCCCcc-------------hheehhhhcC
Confidence 34456788888866 4422 12 01122666677777788777776543221 1134456789
Q ss_pred CHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST 172 (293)
Q Consensus 93 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 172 (293)
++++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++-+....
T Consensus 667 ~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 667 QLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp CHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999876653 557899999999999999999999998753 33444455556777666665555543
Q ss_pred hcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036775 173 VYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207 (293)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 207 (293)
.| -++.-..+|.+.|++++|++++.+++
T Consensus 736 -~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 736 -TG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp -TT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred -cC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 22 13334445666777777777777665
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.28 E-value=0.0004 Score=44.04 Aligned_cols=62 Identities=16% Similarity=-0.030 Sum_probs=30.4
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCc-hHh-HHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhH
Q 036775 188 DMYGRAGLLEEAEAFIREM-PIEA-EWS-VWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTF 249 (293)
Q Consensus 188 ~~~~~~g~~~~a~~~~~~~-~~~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 249 (293)
..+...|++++|...+++. ...| +.. .+..+..++...|+++.|...+++..+..|.+...+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3444555555555555544 2222 223 444444455555555555555555555555444443
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.14 E-value=0.0074 Score=48.07 Aligned_cols=66 Identities=12% Similarity=0.014 Sum_probs=35.3
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcC
Q 036775 178 PQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243 (293)
Q Consensus 178 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 243 (293)
.+..+|..+...+...|++++|...+++. ...|+...|..+...+...|+.++|...+++.....|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 34445555554455556666666665555 3334544444444445556666666666655555544
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.13 E-value=0.0013 Score=41.53 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=55.0
Q ss_pred HHHHHHhcCChhhchHHHHHHHhhcCCchh-hHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775 218 LLNACRIHRNDEMFDPIRQELVNKKGVSVG-TFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG 282 (293)
Q Consensus 218 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 282 (293)
....+...|+++.|...+++..+..|.++. .+..+..++...|++++|.+.|++..+. .|+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 69 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSP 69 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcH
Confidence 345578899999999999999999999999 9999999999999999999999998874 44443
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.053 Score=38.26 Aligned_cols=129 Identities=13% Similarity=0.110 Sum_probs=78.2
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHH
Q 036775 86 NMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI 165 (293)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 165 (293)
......|+++.|.++.+.+ .+...|..|.....+.|+++-|...|.+..+ +..+.-.|.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445677888887776655 3556788888888888888888888877642 2334444555666666555
Q ss_pred HHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHH
Q 036775 166 LFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238 (293)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 238 (293)
+-+.... .| -++.-...+.-.|+++++.++|.+.+.-|.... .....|-.+.|.++.+.+
T Consensus 82 la~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 5444443 22 144455566677888888888877764343221 123355556666655444
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.90 E-value=0.011 Score=37.78 Aligned_cols=71 Identities=8% Similarity=-0.065 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-----C----CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHH
Q 036775 180 TQHYACVVDMYGRAGLLEEAEAFIREM-----P----IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFA 250 (293)
Q Consensus 180 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 250 (293)
..-+..|...+.+.|+++.|..+|+.. + -.+....+..+..++.+.|+++.|...++++.+..|.+..+.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 333445555666666666666666554 0 0123445666666666666666666666666666665554433
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.075 Score=37.47 Aligned_cols=130 Identities=12% Similarity=0.099 Sum_probs=86.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC
Q 036775 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL 195 (293)
Q Consensus 116 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 195 (293)
.......|+++.|.++.+++ -+...|..+.......|+++-|.+.|..... +..+.-.|.-.|+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCC
Confidence 34456788888888887765 3778888888888888999888888888764 4456666777788
Q ss_pred hHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775 196 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEI 272 (293)
Q Consensus 196 ~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 272 (293)
.++...+-+....+.+ ++.-...+...|+++++.+++.+..+ +.--.......|-.+.|.++.+++
T Consensus 76 ~e~L~kla~iA~~~g~---~n~af~~~l~lGdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRED---FGSMLLNTFYNNSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcc---HHHHHHHHHHcCCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 7776655444421111 44555667788888888888754422 111112222366778888887765
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.52 E-value=0.031 Score=38.39 Aligned_cols=84 Identities=13% Similarity=0.060 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC---ChhHHHHHHHHhhhhcCCCc--chhHHHHHHHHHHhcCChHHH
Q 036775 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGG---LVDQGLILFKAMSTVYEIVP--QTQHYACVVDMYGRAGLLEEA 199 (293)
Q Consensus 125 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 199 (293)
...+.+-|.+..+.|. ++..+...+..++++++ +.++++.+++...+ .. .| +...+..|.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~-~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP-KG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-HS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455566666655555 57777777777777777 55688888888776 22 24 344555677777888888888
Q ss_pred HHHHHhC-CCCch
Q 036775 200 EAFIREM-PIEAE 211 (293)
Q Consensus 200 ~~~~~~~-~~~~~ 211 (293)
.+.++.+ .+.|+
T Consensus 91 ~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCC
Confidence 8888877 45554
No 225
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.4 Score=39.67 Aligned_cols=252 Identities=11% Similarity=0.125 Sum_probs=153.2
Q ss_pred cCCHHHHHHHHHHHHHcc----CCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHH--HHHHHHHHHcC
Q 036775 19 RGFCEEAVSVFQEMEKTK----EAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG--NAVINMYVKCG 92 (293)
Q Consensus 19 ~~~~~~a~~~~~~m~~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~ 92 (293)
.|+++.|++.+-.+.+.. ...........++..|...++++...+.+..+.+.+|..+...+. +.++.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 367888988887776532 134456678889999999999999988888877755654444322 23333333333
Q ss_pred CHH--HHHHHHHHhhhC-Cc---------ccHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCc---HhHHHHHHHHHh
Q 036775 93 DVG--IAIQVFNMLAYK-DM---------ISWSTVISGLAMNGCGRQALQLFSLMIIN--GVFPD---DVTFIALISACS 155 (293)
Q Consensus 93 ~~~--~A~~~~~~~~~~-~~---------~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~ll~~~~ 155 (293)
..+ .-..+.+....- .. .....|...+...|++.+|.+++.++... |.... ...+..-+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 322 223333333211 11 12356788899999999999999998642 32222 356777888899
Q ss_pred cCCChhHHHHHHHHhhhh---cCCCcch--hHHHHHHHHHHhcCChHHHHHHHHhC----CCCchHhHHHH----HHHHH
Q 036775 156 HGGLVDQGLILFKAMSTV---YEIVPQT--QHYACVVDMYGRAGLLEEAEAFIREM----PIEAEWSVWGA----LLNAC 222 (293)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~---~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~----l~~~~ 222 (293)
..+++..|..+++.+... ...+|+. ..+...+..+...+++.+|.+.|.+. ....+...+.. ++...
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 999999999999887431 1222322 35667788888999999998888777 11112222221 12222
Q ss_pred HhcCChhhchHHHHHHHhhc-CCchhhHHHHHHHHhcC--CCHHHHHHHHH
Q 036775 223 RIHRNDEMFDPIRQELVNKK-GVSVGTFALMSNTFAGA--DRWEDANKIRD 270 (293)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~li~~~~~~--g~~~~a~~~~~ 270 (293)
.-.+....-..+........ .++...|..++.+|... .+++...+.|.
T Consensus 269 iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 269 VLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred HhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 22222233333444333332 34566788888888653 56676666554
No 226
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.22 E-value=6.5e-07 Score=72.78 Aligned_cols=240 Identities=11% Similarity=0.097 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN 86 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (293)
..|..|-.+....+++.+|++.|=+ .-|+..|..++.++.+.|.++.-...+...++ ..- ++.+=+.|+.
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIk-------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK-KAR--ESYVETELIF 124 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCC-------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST-TCC--STTTTHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHh-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-Hhc--ccccHHHHHH
Confidence 3466677777777777777655432 23455778899999999999999998888876 333 3344478999
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------------------CCCcHhH
Q 036775 87 MYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING--------------------VFPDDVT 146 (293)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------------------~~p~~~~ 146 (293)
+|++.+++.+-++++. .|+..-...+..-|...|.++.|.-+|..+.... -.-+..|
T Consensus 125 ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 9999988766544432 3455555666666666777776666665542110 0125567
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CchHhHHHHHHHHHHh
Q 036775 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNACRI 224 (293)
Q Consensus 147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~ 224 (293)
|..+-.+|...+.+..|...--.++- .++. ...++.-|...|.+++.+.+++.- +. +...-+++-|.-.|++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv----hade--L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV----HADE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC----CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc----cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 77777777777777666554333332 1222 334666677777777777777765 32 3455566666666655
Q ss_pred cCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 036775 225 HRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDE 271 (293)
Q Consensus 225 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 271 (293)
. .+++..+.++.... ..----+|++|.+..-|.++.=++..
T Consensus 276 Y-~PeKlmEHlklf~s-----riNipKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 276 F-KPQKMREHLELFWS-----RVNIPKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp S-CTTHHHHHHTTSSS-----SSCCTTTHHHHTTTTCHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHHHH-----hccHHHHHHHHHHHhhHHHHHHHHhc
Confidence 4 33333322222111 11122357788888888877776653
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.22 E-value=0.096 Score=32.62 Aligned_cols=65 Identities=8% Similarity=-0.091 Sum_probs=36.4
Q ss_pred cchHHHHHHHHHHHHcCC---HHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHh
Q 036775 4 RDVVSWTTMIGGYAERGF---CEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIST 70 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 70 (293)
+|...+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|...|+.+.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555555555544433 566666666666632 33344555555556666666666666666655
No 228
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.18 E-value=0.5 Score=42.69 Aligned_cols=254 Identities=11% Similarity=-0.053 Sum_probs=112.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHcc-CCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcC-C-----CCchhHHHHHHHH
Q 036775 15 GYAERGFCEEAVSVFQEMEKTK-EAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYD-L-----SVSNLVGNAVINM 87 (293)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~-----~~~~~~~~~l~~~ 87 (293)
+....|+.++++.+++.....+ ...+....=..+.-+....|..+++..++........ + .+....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3455666666666666543311 0111222222222223344444456665555444111 0 0112222333333
Q ss_pred HHHcCC-HHHHHHHHHHhhhCCc-cc--HH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHH--HHHhcCCC
Q 036775 88 YVKCGD-VGIAIQVFNMLAYKDM-IS--WS--TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI--SACSHGGL 159 (293)
Q Consensus 88 ~~~~~~-~~~A~~~~~~~~~~~~-~~--~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll--~~~~~~~~ 159 (293)
++-.|. -+++.+.+..+...+. .. .. +|...+.-.|+.+....++..+.+.. +......+. -++...|+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 333332 2344555554443322 11 11 22223345566666666666665431 222222233 33446677
Q ss_pred hhHHHHHHHHhhhhcCCCcchhHH--HHHHHHHHhcCChHHHHHHHHhCCCC--chHhHHHHHHHHHHhcCChhhchHHH
Q 036775 160 VDQGLILFKAMSTVYEIVPQTQHY--ACVVDMYGRAGLLEEAEAFIREMPIE--AEWSVWGALLNACRIHRNDEMFDPIR 235 (293)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~ 235 (293)
.+.+..+.+.+.. ...|....- .++.-+|+..|+.....++++.+... .++.....+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~--~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLA--SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 7777777777765 222322211 23344566677766666677766212 22222222222344556666666666
Q ss_pred HHHHhhcCCchhhHHHHHHHHhcCCCH-HHHHHHHHHHH
Q 036775 236 QELVNKKGVSVGTFALMSNTFAGADRW-EDANKIRDEIR 273 (293)
Q Consensus 236 ~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~ 273 (293)
+.+.+...+...--..+.-+....|.. .++.+++..+.
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 555444433333223333333333332 45555555553
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.15 E-value=0.032 Score=42.76 Aligned_cols=66 Identities=9% Similarity=0.064 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHh-----cCChhhchHHHHHHHhhcCC-chhhHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCC
Q 036775 213 SVWGALLNACRI-----HRNDEMFDPIRQELVNKKGV-SVGTFALMSNTFAGA-DRWEDANKIRDEIRRMGLK 278 (293)
Q Consensus 213 ~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~ 278 (293)
..|..+...|.. .|+.++|...|++..+..|. +..++......+++. |+.+++.+++++.......
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 345555555544 35666666666666665553 355566666666553 6666666666665554433
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.11 E-value=0.052 Score=37.25 Aligned_cols=89 Identities=8% Similarity=-0.133 Sum_probs=65.8
Q ss_pred ChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-c--hHhHHHHHHHHHHhcCChhhc
Q 036775 159 LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAG---LLEEAEAFIREM-PIE-A--EWSVWGALLNACRIHRNDEMF 231 (293)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~-~~~-~--~~~~~~~l~~~~~~~~~~~~a 231 (293)
....+.+.|.+... .+ +++..+...+..++++.+ ++++++.+|++. ... | +...+..+.-+|.+.|+++.|
T Consensus 13 ~l~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 34455666666554 23 367778888888999988 667999999888 323 5 344566677778999999999
Q ss_pred hHHHHHHHhhcCCchhhH
Q 036775 232 DPIRQELVNKKGVSVGTF 249 (293)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~ 249 (293)
.+.++.+.+..|.+....
T Consensus 91 ~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhcCCCCHHHH
Confidence 999999999998775543
No 231
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.96 E-value=0.7 Score=39.89 Aligned_cols=56 Identities=7% Similarity=-0.065 Sum_probs=40.9
Q ss_pred HHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775 218 LLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR 273 (293)
Q Consensus 218 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 273 (293)
.+....+.|+++.+...++.+.........-.-.+..++...|+.++|..+|..+.
T Consensus 291 ~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 291 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 33444567899999888887766444345556677788888899999999888764
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.87 E-value=0.11 Score=32.96 Aligned_cols=66 Identities=5% Similarity=-0.156 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc-----CCCchHHHHHHHHHHhcccCcchHHHHHHHHHHh
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK-----EAEPNEATLVNVLSACSSISALSFGQYVHSYIST 70 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 70 (293)
+..-+..|-..+.+.|++..|...|+...+.. ...+....+..+..++.+.|+++.|...++.+.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44455667777888888888888888776531 0123455666666666677777777776666655
No 233
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.77 E-value=0.079 Score=33.19 Aligned_cols=63 Identities=11% Similarity=0.189 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHH
Q 036775 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188 (293)
Q Consensus 124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (293)
+.-++.+-++.+....+.|++....+.+.+|.+.+++..|.++++.++.+.+ +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 5667788888888889999999999999999999999999999999986433 44556877764
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.76 E-value=0.27 Score=33.54 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHhhhCC---cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 036775 92 GDVGIAIQVFNMLAYKD---MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPD 143 (293)
Q Consensus 92 ~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 143 (293)
+++++|.++|+.+.+.. ...|....+--.+.|+.+.|.+++.+....+.+|.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 45555555555543210 11233333344556777777777777666665543
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.76 E-value=0.13 Score=39.42 Aligned_cols=90 Identities=12% Similarity=-0.016 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhhhCCc-----ccHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcC-CChhH
Q 036775 94 VGIAIQVFNMLAYKDM-----ISWSTVISGLAMN-----GCGRQALQLFSLMIINGVFPDDVTFIALISACSHG-GLVDQ 162 (293)
Q Consensus 94 ~~~A~~~~~~~~~~~~-----~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~ 162 (293)
...|...+++..+-|. ..|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 5667777777776544 3788888888884 89999999999988864432366677777777774 88999
Q ss_pred HHHHHHHhhhhcCCC--cchhHHH
Q 036775 163 GLILFKAMSTVYEIV--PQTQHYA 184 (293)
Q Consensus 163 a~~~~~~~~~~~~~~--~~~~~~~ 184 (293)
+.+.+++... .... |+....+
T Consensus 259 a~~~L~kAL~-a~p~~~P~~~lan 281 (301)
T 3u64_A 259 FDEALDRALA-IDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHH-CCGGGCSSCHHHH
T ss_pred HHHHHHHHHc-CCCCCCCChhHHH
Confidence 9999998886 3433 4443333
No 236
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.73 E-value=0.1 Score=36.24 Aligned_cols=69 Identities=9% Similarity=0.000 Sum_probs=40.7
Q ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchH-------HHHHHHHHHhcccCcchHHHHHHHHHHh
Q 036775 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNE-------ATLVNVLSACSSISALSFGQYVHSYIST 70 (293)
Q Consensus 2 p~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 70 (293)
|+.+...+-.-+..+...|.++.|+-+.+.+....+..|+. .++..+..++...+++..|...|++..+
T Consensus 16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 33344445556677777888888877777654432122331 2455566667778888888888877644
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.64 E-value=0.2 Score=34.19 Aligned_cols=110 Identities=7% Similarity=0.042 Sum_probs=52.5
Q ss_pred cHhHHHHHHHHHhcCCCh------hHHHHHHHHhhhhcCCCcchh-HHHHHHH------HHHhcCChHHHHHHHHhC-CC
Q 036775 143 DDVTFIALISACSHGGLV------DQGLILFKAMSTVYEIVPQTQ-HYACVVD------MYGRAGLLEEAEAFIREM-PI 208 (293)
Q Consensus 143 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~a~~~~~~~-~~ 208 (293)
|..+|-..+...-+.|+. ++..++|++... .++|+.. .|...+. .+...++.++|.++|+.+ .+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 455666666666666766 666677776664 4555421 1111111 112235555555555555 11
Q ss_pred -CchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHH
Q 036775 209 -EAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSN 254 (293)
Q Consensus 209 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 254 (293)
+.-...|.....--.++|+...|.+++.+.....|.+.......+.
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 0002233333333355566666666655555555444444444433
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.42 E-value=0.34 Score=32.43 Aligned_cols=140 Identities=11% Similarity=0.058 Sum_probs=81.4
Q ss_pred HHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHH
Q 036775 16 YAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 95 (293)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 95 (293)
+.-.|.+++-.++..+..+.. +..-|+-+|--....-+-+-..++++.+-+ -.|.. .+|++.
T Consensus 17 ~ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGk----iFDis----------~C~NlK 78 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGS----YFDLD----------KCQNLK 78 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG----GSCGG----------GCSCTH
T ss_pred HHHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhh----hcCcH----------hhhcHH
Confidence 445577777777777776542 333444444444444444445555555433 22322 233333
Q ss_pred HHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC
Q 036775 96 IAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175 (293)
Q Consensus 96 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 175 (293)
.....+-.+- .+....+..+..+...|.-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.+.-+ .|
T Consensus 79 rVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~-kG 155 (172)
T 1wy6_A 79 SVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK-KG 155 (172)
T ss_dssp HHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH-hh
Confidence 3333332221 2334455666677777888888888877543 3456777777788888888888888888887776 45
Q ss_pred C
Q 036775 176 I 176 (293)
Q Consensus 176 ~ 176 (293)
+
T Consensus 156 ~ 156 (172)
T 1wy6_A 156 E 156 (172)
T ss_dssp C
T ss_pred h
Confidence 4
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.25 E-value=0.0039 Score=51.28 Aligned_cols=211 Identities=13% Similarity=0.078 Sum_probs=152.5
Q ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHH
Q 036775 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN 82 (293)
Q Consensus 3 ~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (293)
..|+..|..+|.+..+.|.+++-+..+...++.. ..|... +.++-+|++.++..+.+++ -..|+..-..
T Consensus 80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-ke~~ID--teLi~ayAk~~rL~elEef--------l~~~N~A~iq 148 (624)
T 3lvg_A 80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVE--TELIFALAKTNRLAELEEF--------INGPNNAHIQ 148 (624)
T ss_dssp CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-CSTTTT--HHHHHHHHTSCSSSTTTST--------TSCCSSSCTH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccH--HHHHHHHHhhCcHHHHHHH--------HcCCCcccHH
Confidence 4577788999999999999999999988877754 445444 5788899999988764333 3346666667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhh------------------------CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 036775 83 AVINMYVKCGDVGIAIQVFNMLAY------------------------KDMISWSTVISGLAMNGCGRQALQLFSLMIIN 138 (293)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 138 (293)
.+.+-|...|.++.|.-+|..+.. .++.||..+-.+|...+.+.-|.-.--.+.-.
T Consensus 149 ~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh 228 (624)
T 3lvg_A 149 QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH 228 (624)
T ss_dssp HHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC
T ss_pred HHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc
Confidence 889999999999999988877651 27789999999999999998887766555532
Q ss_pred CCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC----CCC-----
Q 036775 139 GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM----PIE----- 209 (293)
Q Consensus 139 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~----- 209 (293)
|| -...++..|-..|.+++-+.+++.-.. --.....+|+-|.-.|++- +.++..+-++.. .+.
T Consensus 229 ---ad--eL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvira 300 (624)
T 3lvg_A 229 ---AD--ELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRA 300 (624)
T ss_dssp ---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHH
T ss_pred ---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHH
Confidence 22 233467778899999999999998773 2345677888888888875 456666655554 211
Q ss_pred -chHhHHHHHHHHHHhcCChhhch
Q 036775 210 -AEWSVWGALLNACRIHRNDEMFD 232 (293)
Q Consensus 210 -~~~~~~~~l~~~~~~~~~~~~a~ 232 (293)
-....|.-++-.|.+..+++.|.
T Consensus 301 cE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 301 AEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhhHHHHHHHHhcchhHHHHH
Confidence 12234666666666666666543
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.22 E-value=0.25 Score=30.99 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775 21 FCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI 85 (293)
Q Consensus 21 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 85 (293)
+.-+..+-++.+.... ..|++....+.+++|.+.+++..|.++++.++.+ ......+|..++
T Consensus 25 D~~e~rrglN~l~~~D-lVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYD-LVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSS-BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccc-cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHH
Confidence 3445556666666555 6777777777777777777777777777777663 223344454444
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.14 E-value=1.1 Score=36.91 Aligned_cols=92 Identities=10% Similarity=0.113 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-----CCCch---HhHHHHHHHHHHhcCChhhchHHHHHHHhh---cCCc----hh
Q 036775 183 YACVVDMYGRAGLLEEAEAFIREM-----PIEAE---WSVWGALLNACRIHRNDEMFDPIRQELVNK---KGVS----VG 247 (293)
Q Consensus 183 ~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~ 247 (293)
...|...|...|++.+|.+++..+ +.... ...+...++.|...+++..|..+++++... .+++ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345677777888888888877776 21111 234555566677888888888887776532 1222 23
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 248 TFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 248 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
.|...+..+...++|.+|.+.|.+..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 456667777777888888777766543
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.09 E-value=0.088 Score=42.69 Aligned_cols=68 Identities=12% Similarity=0.034 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH-----cCCCCCCcc
Q 036775 216 GALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR-----MGLKKKTGC 283 (293)
Q Consensus 216 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 283 (293)
..++..+...|+...+...++.+....|.+...|..++.++.+.|+..+|.+.|++..+ .|+.|.+.+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34556677888888888888888888888888888889999999999999888887643 488887653
No 243
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.04 E-value=0.39 Score=31.71 Aligned_cols=84 Identities=14% Similarity=0.048 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhH---HHHHHHHhhhhcCCCc--chhHHHHHHHHHHhcCChHH
Q 036775 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ---GLILFKAMSTVYEIVP--QTQHYACVVDMYGRAGLLEE 198 (293)
Q Consensus 124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 198 (293)
....+.+-|.+....|. |+..+-..+..++.++++... ++.+++.+.+ .+ .| .....-.|.-++.+.|++++
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-KG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-TS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 34455555555544444 566666666677777776555 7777777765 22 23 23344456667777777777
Q ss_pred HHHHHHhC-CCCc
Q 036775 199 AEAFIREM-PIEA 210 (293)
Q Consensus 199 a~~~~~~~-~~~~ 210 (293)
|.+.++.+ .+.|
T Consensus 93 A~~~~~~lL~~eP 105 (126)
T 1nzn_A 93 ALKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCC
Confidence 77777776 4444
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.98 E-value=0.2 Score=44.10 Aligned_cols=51 Identities=8% Similarity=-0.028 Sum_probs=48.3
Q ss_pred HHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775 222 CRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEI 272 (293)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 272 (293)
+...|+++.|..+-++.....|.+..+|..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 678999999999999999999999999999999999999999999999986
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.72 E-value=1.2 Score=35.01 Aligned_cols=169 Identities=14% Similarity=0.052 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHH----HHHHHhCCCCCcHhHHHHHHHHHh
Q 036775 80 VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQL----FSLMIINGVFPDDVTFIALISACS 155 (293)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~ 155 (293)
.|.++..-|.+.+++++|++++-.- ...+.+.|+...|-++ ++-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4455666788999999999987543 2345556766555444 355566788888888888888776
Q ss_pred cCCChh-HHHHHHHHhhh---hcC--CCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChh
Q 036775 156 HGGLVD-QGLILFKAMST---VYE--IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229 (293)
Q Consensus 156 ~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (293)
....-+ .=.++.+.+.. ..| ..-++.....+...|.+.+++.+|+.-|- .+..+....+..++..+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCc
Confidence 654321 11223333322 122 23456677788999999999999999885 354555566666655554444322
Q ss_pred hchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 230 MFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
++..+ ....+--|.-.++...|..+++...+
T Consensus 185 e~dlf--------------iaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 TAPLY--------------CARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GHHHH--------------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHH--------------HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22211 22234456667788999888777654
No 246
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=94.71 E-value=0.22 Score=33.10 Aligned_cols=63 Identities=11% Similarity=0.176 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHH
Q 036775 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188 (293)
Q Consensus 124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (293)
|.-+..+-++.+....+.|++......+.+|.+.+++..|.++|+.++.+. .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 455677788888888999999999999999999999999999999998743 344667877763
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.67 E-value=1.2 Score=34.72 Aligned_cols=169 Identities=12% Similarity=0.087 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHH----HHHHHHhCCCCCcHhHHHHHHHHHh
Q 036775 80 VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQ----LFSLMIINGVFPDDVTFIALISACS 155 (293)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~~~~ 155 (293)
.|.++..-|.+.+++++|.+++... ...+.+.|+...|-+ +.+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456677788889999999887644 234556677666555 4556667788999888888888776
Q ss_pred cCCChh-HHHHHHHHhhh---hcC--CCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhc---C
Q 036775 156 HGGLVD-QGLILFKAMST---VYE--IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH---R 226 (293)
Q Consensus 156 ~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~---~ 226 (293)
....-+ .-.++++.+.. ..| ...++.....+...|.+.|++.+|+.-|- .+..-+...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCC
Confidence 533211 22333333332 012 22466778889999999999999999887 33223455555555544333 4
Q ss_pred ChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 227 NDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
...++..+ ....+--|.-.|+...|..+|+...+
T Consensus 183 ~~~e~dlf--------------~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAEF--------------FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHH--------------HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHHH--------------HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33332221 12223445567888999998887654
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.16 E-value=1.3 Score=41.57 Aligned_cols=182 Identities=12% Similarity=0.095 Sum_probs=109.5
Q ss_pred HHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-------------------
Q 036775 47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK------------------- 107 (293)
Q Consensus 47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------- 107 (293)
.++..+...+..+.+.++.... +.+....-.+..+|...|++++|.++|++....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 4555566667776666554432 233333455667777888888888888765311
Q ss_pred -----C--cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C-CcH--hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCC
Q 036775 108 -----D--MISWSTVISGLAMNGCGRQALQLFSLMIINGV-F-PDD--VTFIALISACSHGGLVDQGLILFKAMSTVYEI 176 (293)
Q Consensus 108 -----~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~-p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 176 (293)
+ ..=|..++..+.+.+.++.+.++-....+... . ++. ..|..+.+++...|++++|...+-.+.. ...
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~~ 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TPL 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SSS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HHH
Confidence 0 01266788888888988888887776654321 1 111 2577888888999999999888877654 222
Q ss_pred CcchhHHHHHHHHHHhc------------CChHHHHHHHHhC-------CCCchHhHHHHHHHH-HHhcCChhh-chHHH
Q 036775 177 VPQTQHYACVVDMYGRA------------GLLEEAEAFIREM-------PIEAEWSVWGALLNA-CRIHRNDEM-FDPIR 235 (293)
Q Consensus 177 ~~~~~~~~~l~~~~~~~------------g~~~~a~~~~~~~-------~~~~~~~~~~~l~~~-~~~~~~~~~-a~~~~ 235 (293)
+ ......|+...+.. |..++..+++..- ...| .|..++.+ +..+|++.. |..+|
T Consensus 970 r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p---~Yy~iLYs~ri~r~dyR~AA~vmY 1044 (1139)
T 4fhn_B 970 K--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQP---CWYNILFSWRYKHQNYRDAAAIIY 1044 (1139)
T ss_dssp C--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCST---HHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred H--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCC---CHHHHhHhhhhccCChHHHHHHHH
Confidence 2 23344555544443 5566777776543 1122 34455555 566666654 45555
Q ss_pred HHHHh
Q 036775 236 QELVN 240 (293)
Q Consensus 236 ~~~~~ 240 (293)
+.+.+
T Consensus 1045 e~~~R 1049 (1139)
T 4fhn_B 1045 EKLSR 1049 (1139)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.13 E-value=0.62 Score=41.14 Aligned_cols=123 Identities=15% Similarity=0.074 Sum_probs=77.2
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHccCCCchHHH-H-HHHHHHhcccC-cchHHHHHHHHHHhh-----cCCCCch--
Q 036775 10 TTMIGGYAERGF-CEEAVSVFQEMEKTKEAEPNEAT-L-VNVLSACSSIS-ALSFGQYVHSYISTR-----YDLSVSN-- 78 (293)
Q Consensus 10 ~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~p~~~~-~-~~ll~~~~~~~-~~~~a~~~~~~~~~~-----~~~~~~~-- 78 (293)
..|+..+...++ .+.|+++|+++.+. .|.... + ..++......+ .--+|.+++.+..+. ...++..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 445555555666 58899999999885 344333 2 23333333322 122233333333220 1122211
Q ss_pred ---------hHHHHHHHHHHHcCCHHHHHHHHHHhhh--C-CcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 036775 79 ---------LVGNAVINMYVKCGDVGIAIQVFNMLAY--K-DMISWSTVISGLAMNGCGRQALQLFSLM 135 (293)
Q Consensus 79 ---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 135 (293)
.....-...+...|+++-|+++-++... | +-.+|..|..+|...|+++.|+-.++.+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1222334556778999999999998875 4 5679999999999999999999999987
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.09 E-value=0.32 Score=39.38 Aligned_cols=57 Identities=9% Similarity=-0.037 Sum_probs=29.8
Q ss_pred HHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 036775 47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 105 (293)
Q Consensus 47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 105 (293)
.++..+...|+..++...+..+.. ..|.+...+..||.++.+.|+..+|++.|++..
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444455555555555555544 334455555555555555555555555555543
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.77 E-value=0.68 Score=30.79 Aligned_cols=57 Identities=16% Similarity=0.157 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHH
Q 036775 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVIS 117 (293)
Q Consensus 60 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~ 117 (293)
+..+-++.+.. ..+-|++.+..+.+.+|-+.+++..|.++|+.++.+ ...+|..+++
T Consensus 71 ElrrglN~l~~-~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 34445555555 566777777777777777777777777777777643 3345666654
No 252
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.62 E-value=0.97 Score=29.81 Aligned_cols=90 Identities=8% Similarity=-0.125 Sum_probs=60.0
Q ss_pred ChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-c--hHhHHHHHHHHHHhcCChhhc
Q 036775 159 LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE---AEAFIREM-PIE-A--EWSVWGALLNACRIHRNDEMF 231 (293)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~-~~~-~--~~~~~~~l~~~~~~~~~~~~a 231 (293)
.+..+.+-|..... .+ .++..+-..+..++.+..+... ++.++++. ... | .......|.-++.+.|+++.|
T Consensus 16 ~l~~~~~~y~~e~~-~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHH-HS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34455555555543 23 2666666677778888776655 88888877 323 4 223444556668899999999
Q ss_pred hHHHHHHHhhcCCchhhHH
Q 036775 232 DPIRQELVNKKGVSVGTFA 250 (293)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~ 250 (293)
.+.++.+.+..|.+.....
T Consensus 94 ~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHH
Confidence 9999999988887765543
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.34 E-value=1.1 Score=31.13 Aligned_cols=113 Identities=9% Similarity=0.005 Sum_probs=62.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhh-----CCc-------ccHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcH-hH
Q 036775 81 GNAVINMYVKCGDVGIAIQVFNMLAY-----KDM-------ISWSTVISGLAMNGCGRQALQLFSLMIING-VFPDD-VT 146 (293)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-~~ 146 (293)
+..-+..+...|.++.|+-+.+.+.. ++. .+...+.+++...|++..|...|++..+.. .-+.. .+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34557777788888888877766542 222 145566777888888888888888864321 11111 11
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036775 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207 (293)
Q Consensus 147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 207 (293)
...+- ....... . .....+.+.-..+..+|.+.+++++|+.+++.++
T Consensus 103 ~~~~~----~~ss~p~---------s-~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 103 RPSTG----NSASTPQ---------S-QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccccc----ccCCCcc---------c-ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 11110 0000000 0 1122344455557788888999999999988884
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.63 E-value=2.1 Score=35.16 Aligned_cols=94 Identities=10% Similarity=-0.118 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhC------CcccHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCcHhHH--
Q 036775 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYK------DMISWSTVISGLAMNGCGRQALQLFSLMII---NGVFPDDVTF-- 147 (293)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~-- 147 (293)
.+...+...|.+.|++++|.+.|.++... -...+-.+++.+...+++..+...+++... .+..|+...-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35678999999999999999999999864 234677888999999999999999998753 3333333211
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhh
Q 036775 148 IALISACSHGGLVDQGLILFKAMST 172 (293)
Q Consensus 148 ~~ll~~~~~~~~~~~a~~~~~~~~~ 172 (293)
..-...+...+++..|.+.|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1112224567889999888887765
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.07 E-value=1.8 Score=40.59 Aligned_cols=122 Identities=7% Similarity=-0.127 Sum_probs=80.5
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC--CCCc----------------
Q 036775 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--PIEA---------------- 210 (293)
Q Consensus 149 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~---------------- 210 (293)
.++..+...+..+.+.++..... .+...--.+..+|...|++++|.+.|++. ++..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34445556666666655443332 23333345677888899999999999887 1100
Q ss_pred -------hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCch-----hhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775 211 -------EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSV-----GTFALMSNTFAGADRWEDANKIRDEIRRMG 276 (293)
Q Consensus 211 -------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 276 (293)
-..-|..++..+.+.+.++.+.++-+...+...++. ..|..+...+...|++++|...+-.+.+..
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 012356667778888888888888877766442221 257888899999999999988886665443
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.42 E-value=2.1 Score=28.43 Aligned_cols=73 Identities=8% Similarity=-0.020 Sum_probs=46.2
Q ss_pred CCCCcHhHHHHHHHHHhcCCCh---hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchH
Q 036775 139 GVFPDDVTFIALISACSHGGLV---DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW 212 (293)
Q Consensus 139 g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~ 212 (293)
+..|+..|--....++.++.+. .+++.+++.+.+ .+..-....+-.|.-++.+.|++++|.+..+.+ .+.|+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 4455666655666666666554 457777777775 231112345556777888888888888888877 556643
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.46 E-value=1.3 Score=33.51 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=33.6
Q ss_pred HHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
...+.|+++++++....-++ .-+.|...-..++..+|-.|++++|..-++..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34566777777776666654 33455555666777777777777777666665
No 258
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.28 E-value=15 Score=33.52 Aligned_cols=222 Identities=9% Similarity=-0.083 Sum_probs=116.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHccCC------CchHHHHHHHHHHhcccCc-chHHHHHHHHHHhhcCCCCchhHH--HHH
Q 036775 14 GGYAERGFCEEAVSVFQEMEKTKEA------EPNEATLVNVLSACSSISA-LSFGQYVHSYISTRYDLSVSNLVG--NAV 84 (293)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~~~~~------~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~~l 84 (293)
-+....|.-+++..++......... .+....-.++.-+.+-.|. -+++...+..+.. .. .+..... .+|
T Consensus 419 LGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~-dd-~~~~~~~AalAL 496 (963)
T 4ady_A 419 LGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLY-ND-SATSGEAAALGM 496 (963)
T ss_dssp HHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH-TC-CHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHh-cC-CHHHHHHHHHHH
Confidence 3455666666788877776654310 1112222222222322332 2344444444443 11 1111112 233
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhC-Cccc--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHH--HHHHHHHhcCCC
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYK-DMIS--WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF--IALISACSHGGL 159 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~ 159 (293)
...+.-.|+.+....++..+.+. +... .-.+.-++...|+.+.+..+.+.+... ..|....- .++.-+|+..|+
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCC
T ss_pred hhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCC
Confidence 44455667777777777766543 2222 223334455789999999999888764 22222222 233446778899
Q ss_pred hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC--CCCchHhHHHHHHHHHHhcCCh-hhchHHHH
Q 036775 160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRND-EMFDPIRQ 236 (293)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~ 236 (293)
.....+++..+.+ ....+..-...+.-++...|+.+.+.++++.+ ...|.+..-..+.-+....|+. ..+...+.
T Consensus 576 ~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 8888889999886 22333333333444555567777777777765 2344444333444444445444 45666666
Q ss_pred HHHh
Q 036775 237 ELVN 240 (293)
Q Consensus 237 ~~~~ 240 (293)
.+..
T Consensus 654 ~L~~ 657 (963)
T 4ady_A 654 PLTK 657 (963)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 6654
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.91 E-value=4.6 Score=27.22 Aligned_cols=69 Identities=7% Similarity=-0.031 Sum_probs=37.5
Q ss_pred CCcHhHHHHHHHHHhcCCCh---hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc
Q 036775 141 FPDDVTFIALISACSHGGLV---DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA 210 (293)
Q Consensus 141 ~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~ 210 (293)
.|+..+--....++.++.+. .+++.+++.+.+ .+..-.....-.|.-++.+.|++++|.+..+.+ ...|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~-~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH-HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 45555555555566655543 356666666664 221112233344555666777777776666666 3444
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.74 E-value=3.6 Score=25.77 Aligned_cols=86 Identities=19% Similarity=0.184 Sum_probs=49.7
Q ss_pred CcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 036775 56 SALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM 135 (293)
Q Consensus 56 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 135 (293)
...++|..+-+.+.. .+. ...+--+-+..+.+.|++++|..+.+...-||...|-+|-. .+.|..+++..-+.++
T Consensus 21 H~HqEA~tIAdwL~~-~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 21 HYHEEANCIAEWLHL-KGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp TCHHHHHHHHHHHHH-TTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh-CCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 345566666666554 222 22222333445667777777777777777777777766543 4567777777666666
Q ss_pred HhCCCCCcHhHH
Q 036775 136 IINGVFPDDVTF 147 (293)
Q Consensus 136 ~~~g~~p~~~~~ 147 (293)
...|- |....|
T Consensus 96 a~sg~-p~~q~F 106 (116)
T 2p58_C 96 ARSQD-PRIQTF 106 (116)
T ss_dssp TTCCC-HHHHHH
T ss_pred HhCCC-HHHHHH
Confidence 65543 344444
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.44 E-value=4.1 Score=27.07 Aligned_cols=51 Identities=14% Similarity=-0.020 Sum_probs=33.3
Q ss_pred CcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC
Q 036775 56 SALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107 (293)
Q Consensus 56 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 107 (293)
.+...+..+++.+.+ .+........--|.-++.+.|++++|.+..+.+.+.
T Consensus 57 ~d~~~GI~LLe~l~~-~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 57 NDERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHHHH-HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh-cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 356677777777766 331122333455666788888888888888887754
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=86.01 E-value=7.8 Score=27.88 Aligned_cols=57 Identities=7% Similarity=0.043 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHhhcCCCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHH
Q 036775 58 LSFGQYVHSYISTRYDLSVS-NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115 (293)
Q Consensus 58 ~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 115 (293)
...+..+|..|.. .|+-.. ...|..-...+...|++.+|.++|+...+....-...|
T Consensus 95 ~~~p~~if~~L~~-~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL 152 (202)
T 3esl_A 95 FHESENTFKYMFN-KGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRL 152 (202)
T ss_dssp HHHHHHHHHHHHH-HTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred cCCHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 3344555555544 333322 22344444444455555555555554444443333333
No 263
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.97 E-value=6.1 Score=26.64 Aligned_cols=72 Identities=7% Similarity=-0.086 Sum_probs=46.3
Q ss_pred CcchhHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCc--hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhh
Q 036775 177 VPQTQHYACVVDMYGRAGLL---EEAEAFIREM-PIEA--EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGT 248 (293)
Q Consensus 177 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 248 (293)
.|+..+-..+..++.+..+. .+++.+++++ ...| .......|.-++.+.|+++.|.++.+.+.+..|.+...
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 46666666666677776654 4566677766 2223 22334445566778888888888888888877776543
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.85 E-value=7.8 Score=31.76 Aligned_cols=62 Identities=6% Similarity=-0.068 Sum_probs=33.1
Q ss_pred HHHHHHHHhcccCcchHHHHHHHHHHhh-cCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 036775 44 TLVNVLSACSSISALSFGQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 105 (293)
Q Consensus 44 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 105 (293)
+...+...+.+.|+++.|.+.+.++... .+...-...+-.++..+...+++..+...+++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444555555666666666666666551 1112223344555666666666666666665554
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.43 E-value=12 Score=29.47 Aligned_cols=129 Identities=9% Similarity=-0.029 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHH----HHHHHHhhcCCCCchhHHHH
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY----VHSYISTRYDLSVSNLVGNA 83 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~ 83 (293)
+|-++..-|.+.+++++|++++..-.. .+.+.|+...+-+ +.+-..+ .+.++|......
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~----------------~ll~~~Q~~sg~DL~~llvevy~~-~~~~~~~~~~~r 99 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ----------------TLLRSGQGGSGGDLAVLLVDTFRQ-AGQRVDGASRGK 99 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHHTTCHHHHHHHHHHHHHHHHH-HTCCCCHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH----------------HHHHCCCcchHHHHHHHHHHHHHH-cCCCCCHHHHHH
Confidence 455556666666666666665543211 1222233333222 2233333 566666666666
Q ss_pred HHHHHHHcCCHH-HHHHHHHHhhh----------CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 036775 84 VINMYVKCGDVG-IAIQVFNMLAY----------KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152 (293)
Q Consensus 84 l~~~~~~~~~~~-~A~~~~~~~~~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 152 (293)
|+..+.....-+ .=..+.+++.+ -|......+...|.+.+++.+|..-|- .|-.++..+|..++.
T Consensus 100 L~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 100 LLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEY 175 (336)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHH
Confidence 666665554311 11222222221 155666777888888888888877762 233444456655555
Q ss_pred HHhcC
Q 036775 153 ACSHG 157 (293)
Q Consensus 153 ~~~~~ 157 (293)
-+...
T Consensus 176 ew~~~ 180 (336)
T 3lpz_A 176 EWYKQ 180 (336)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 44443
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.09 E-value=11 Score=28.64 Aligned_cols=118 Identities=14% Similarity=0.081 Sum_probs=71.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchh----HHHHHHHHHHh
Q 036775 117 SGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ----HYACVVDMYGR 192 (293)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 192 (293)
..+.+.|++++|++....-++..+. |...-..++..+|-.|+++.|.+-++...+. .|+.. .|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH---
Confidence 3456778888888888877776543 7777778888888899999998888877752 34432 33333322
Q ss_pred cCChHHHHH-HHHhC-----CCCchHhHHHHHHHH--HHhcCChhhchHHHHHHHhhcCCch
Q 036775 193 AGLLEEAEA-FIREM-----PIEAEWSVWGALLNA--CRIHRNDEMFDPIRQELVNKKGVSV 246 (293)
Q Consensus 193 ~g~~~~a~~-~~~~~-----~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~ 246 (293)
+.... +|.-- --.|.. -...++.+ ....|+.+.|..+-..+.+.-|..+
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 11111 22211 011222 23344455 3456888888888877776654443
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.78 E-value=5.4 Score=24.97 Aligned_cols=86 Identities=9% Similarity=0.030 Sum_probs=50.9
Q ss_pred cchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036775 57 ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMI 136 (293)
Q Consensus 57 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 136 (293)
..++|..+-+.+.. .+. ...+--+-+..+.+.|++++|..+.+...-||...|-+|- -.+.|..+++..-+.++.
T Consensus 21 ~HqEA~tIAdwL~~-~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 21 CHEEALCIAEWLER-LGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLG 95 (115)
T ss_dssp CHHHHHHHHHHHHH-TTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHH
Confidence 45566666666554 222 2222233344566777777777777777777777776654 356677777777776766
Q ss_pred hCCCCCcHhHHH
Q 036775 137 INGVFPDDVTFI 148 (293)
Q Consensus 137 ~~g~~p~~~~~~ 148 (293)
..|- |....|.
T Consensus 96 ~sg~-p~~q~Fa 106 (115)
T 2uwj_G 96 GSSD-PALADFA 106 (115)
T ss_dssp TCSS-HHHHHHH
T ss_pred hCCC-HHHHHHH
Confidence 6543 3444443
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.77 E-value=12 Score=29.08 Aligned_cols=62 Identities=11% Similarity=0.016 Sum_probs=35.3
Q ss_pred cCCCCchhHHHHHHHHHHHcCC--------HHHHHHHHHHhhh---CCcccHHHHHHHHHhcCCHHHHHHHHH
Q 036775 72 YDLSVSNLVGNAVINMYVKCGD--------VGIAIQVFNMLAY---KDMISWSTVISGLAMNGCGRQALQLFS 133 (293)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 133 (293)
.+.+++......++..+..... +.+|+++-.+... -|+.....+...|.+.|++.+|..-|-
T Consensus 86 ~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 86 AEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 5666666666666666655332 1222222222211 155667777788888888888777663
No 269
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=84.69 E-value=6.3 Score=29.53 Aligned_cols=248 Identities=9% Similarity=-0.007 Sum_probs=111.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHH---HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH--HHHH
Q 036775 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA---TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV--GNAV 84 (293)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l 84 (293)
+..+...++.|+.+.+..+++. | ..++.. .-.+.+...+..|+.+-+..++ + .|..++... -...
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~----g-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~-~g~~~~~~~~~g~t~ 75 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEG----G-ANVNFQEEEGGWTPLHNAVQMSREDIVELLL----R-HGADPVLRKKNGATP 75 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT----T-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH----H-TTCCTTCCCTTCCCH
T ss_pred chHHHHHHHcCCHHHHHHHHHc----C-CCcccccCCCCCcHHHHHHHcCCHHHHHHHH----H-cCCCCcccCCCCCCH
Confidence 3456667788888766665543 3 222211 1113344445556665444444 3 354443221 1234
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhH------------HHH
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT------------FIA 149 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~------------~~~ 149 (293)
+...+..|+.+-+..+++.-... +...++.+. ..+..|+.+-+ +.+.+.|..++... -.+
T Consensus 76 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t 150 (285)
T 1wdy_A 76 FLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFM-EAAVYGKVKAL----KFLYKRGANVNLRRKTKEDQERLRKGGAT 150 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHH-HHHHTTCHHHH----HHHHHTTCCTTCCCCCCHHHHHTTCCCCC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHH-HHHHhCCHHHH----HHHHHhCCCcccccccHHHHHhhccCCCc
Confidence 45556678877776666653332 333333333 34456665544 44444554443220 112
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhhcCCCcc---hhHHHHHHHHHHhcCCh---HHHHHHHHhCCCCchHh--HHHHHHHH
Q 036775 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQ---TQHYACVVDMYGRAGLL---EEAEAFIREMPIEAEWS--VWGALLNA 221 (293)
Q Consensus 150 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~--~~~~l~~~ 221 (293)
.+...+..|+.+-+..+++.. +..++ ..-.+.+..+ +..++. .+..+++-+.+..++.. .-.+.+..
T Consensus 151 ~L~~A~~~~~~~~v~~Ll~~~----~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~ 225 (285)
T 1wdy_A 151 ALMDAAEKGHVEVLKILLDEM----GADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTS----CCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhc----CCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 333344566666555555431 22222 2222333333 333442 44555554443333221 11123344
Q ss_pred HHhcCChhhchHHHHHH-HhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775 222 CRIHRNDEMFDPIRQEL-VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG 282 (293)
Q Consensus 222 ~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 282 (293)
....|+.+.+..+++.. ......+..-.+. +....+.|+.+ +.+-+.+.|..|+..
T Consensus 226 A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~-l~~A~~~~~~~----i~~~Ll~~Ga~~~~~ 282 (285)
T 1wdy_A 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTA-LLLAVELKLKK----IAELLCKRGASTDCG 282 (285)
T ss_dssp HHHTTCHHHHHHHHHSSSCCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHHSSCSCCS
T ss_pred HHHcCCHHHHHHHHhccCCCccccCCCCCcH-HHHHHHcCcHH----HHHHHHHcCCCCCcc
Confidence 45567666555554411 1111112212222 33334455553 444556678877764
No 270
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=82.97 E-value=11 Score=27.00 Aligned_cols=168 Identities=13% Similarity=-0.034 Sum_probs=95.7
Q ss_pred chHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHH
Q 036775 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119 (293)
Q Consensus 40 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 119 (293)
++...-...+..+.+.+..+....+.+ +.. .++..+-...+.++.+.++.+....+.+.+..++..+-...+.++
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~----~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL 105 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIK-ALK----DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVAL 105 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT----CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHH-HHc----CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 455555555666666665433333333 322 346666677777888887765555555556666777777777888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHH
Q 036775 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199 (293)
Q Consensus 120 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 199 (293)
.+.++.+.. ..+.++.. .++...-...+.++.+.+..+ +...+..+.. .++..+-...+.++.+.+. .++
T Consensus 106 ~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~-~~~ 175 (211)
T 3ltm_A 106 GQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGG-ERV 175 (211)
T ss_dssp HHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCS-HHH
T ss_pred HHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCc-hhH
Confidence 887775443 44444443 356666666777777777654 3444444443 3556666667777777776 445
Q ss_pred HHHHHhCCCCchHhHHHHHHHHH
Q 036775 200 EAFIREMPIEAEWSVWGALLNAC 222 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~l~~~~ 222 (293)
...+..+-..++...-...+.++
T Consensus 176 ~~~L~~~l~d~~~~vr~~A~~aL 198 (211)
T 3ltm_A 176 RAAMEKLAETGTGFARKVAVNYL 198 (211)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Confidence 55555441133443333334443
No 271
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=82.96 E-value=9.9 Score=28.89 Aligned_cols=19 Identities=11% Similarity=0.032 Sum_probs=9.3
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 036775 85 INMYVKCGDVGIAIQVFNM 103 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~ 103 (293)
+...+..|+.+-+..+++.
T Consensus 66 L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 66 LHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHHTTSSSCHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHC
Confidence 3444455555555555443
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.78 E-value=19 Score=29.09 Aligned_cols=163 Identities=7% Similarity=-0.046 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchH---HHHHHHHHHhcccC-cchHHHHHHHHHHhhcCCCCchhHH--
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNE---ATLVNVLSACSSIS-ALSFGQYVHSYISTRYDLSVSNLVG-- 81 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~---~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~-- 81 (293)
+...|...|.+.|+.++..+++...+..=+..|-. .....++..+.... ..+.-.++.....+ +.. .+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~-~a~-~~~r~flr 98 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIE-WAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH-HHH-HTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHH-HHHHHHHH
Confidence 45567788999999999999998875532123333 34567777776543 23333333333333 111 111222
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHhhhC----C-----cccHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCcHhH
Q 036775 82 ----NAVINMYVKCGDVGIAIQVFNMLAYK----D-----MISWSTVISGLAMNGCGRQALQLFSLMIIN--GVFPDDVT 146 (293)
Q Consensus 82 ----~~l~~~~~~~~~~~~A~~~~~~~~~~----~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~ 146 (293)
..|+..|...|++.+|.+++.++.+. | ..+|-.-++.|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 36899999999999999999888752 2 234666778888999999999999887543 22233322
Q ss_pred H--HHHH--HHHh-cCCChhHHHHHHHHhhh
Q 036775 147 F--IALI--SACS-HGGLVDQGLILFKAMST 172 (293)
Q Consensus 147 ~--~~ll--~~~~-~~~~~~~a~~~~~~~~~ 172 (293)
- .... ..+. ..+++..|...|-+..+
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 1 1111 2245 78999999888776653
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.03 E-value=14 Score=26.53 Aligned_cols=47 Identities=9% Similarity=-0.078 Sum_probs=22.8
Q ss_pred hHHHHHHHHhC---CC-CchHhHHHHHHHHHHhcCChhhchHHHHHHHhhc
Q 036775 196 LEEAEAFIREM---PI-EAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242 (293)
Q Consensus 196 ~~~a~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 242 (293)
..++.++|..| ++ ..-...|......+-..|++..|..+|+...+..
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44555555555 11 1223334444444555555555555555555544
No 274
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=79.77 E-value=14 Score=26.15 Aligned_cols=110 Identities=16% Similarity=0.007 Sum_probs=46.6
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhc
Q 036775 77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156 (293)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 156 (293)
+..+-...+.++.+.+..+....+.+.+..++...-...+.++.+.++.+....+ ..+.. .++...-...+.++.+
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L-~~~l~---d~~~~vr~~a~~aL~~ 133 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPL-IKALK---DEDWFVRIAAAFALGE 133 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHH-HHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHH-HHHHc---CCCHHHHHHHHHHHHH
Confidence 3334444444455555443333333334444444445555555555554322222 22222 2344444444555555
Q ss_pred CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC
Q 036775 157 GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL 195 (293)
Q Consensus 157 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 195 (293)
.++.+ +...+..+.. .++..+-...+.++.+.|.
T Consensus 134 ~~~~~-~~~~L~~~l~----d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 134 IGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HTCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCS
T ss_pred hCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCc
Confidence 44432 2223333322 1344444444555555544
No 275
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=79.18 E-value=11 Score=24.82 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCC---cccHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCc
Q 036775 82 NAVINMYVKCGDVGIAIQVFNMLAYKD---MISWSTVISGLAMNGC--GRQALQLFSLMIINGVFPD 143 (293)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 143 (293)
..++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 567777888888888888888887552 2234444455555432 4567777777777665533
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=78.77 E-value=13 Score=25.36 Aligned_cols=50 Identities=18% Similarity=0.111 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhhCCcc-----cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH
Q 036775 95 GIAIQVFNMLAYKDMI-----SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD 144 (293)
Q Consensus 95 ~~A~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 144 (293)
+++..+|..|....+- .|......+...|++.+|.++|+.-.+.+-+|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3367777777766433 3666777777788888888888887777777644
No 277
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.44 E-value=9.9 Score=23.80 Aligned_cols=54 Identities=20% Similarity=0.131 Sum_probs=26.4
Q ss_pred HHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCC
Q 036775 188 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244 (293)
Q Consensus 188 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 244 (293)
..+...|++++|..+.+... .||...|.+|-. .+.|-.+++..-+..+...+.|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~la~sg~p 100 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNP-WPALEPWFALCE--WHLGLGAALDRRLAGLGGSSDP 100 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCC-CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCSSH
T ss_pred HHHHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCCCH
Confidence 34555566666665555555 455555544432 2344444444444444444433
No 278
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=77.98 E-value=9.4 Score=26.09 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCC---cccHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCc
Q 036775 82 NAVINMYVKCGDVGIAIQVFNMLAYKD---MISWSTVISGLAMNGC--GRQALQLFSLMIINGVFPD 143 (293)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 143 (293)
..++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 567778888888888888888886552 2234444455554322 4566777777776665533
No 279
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=76.90 E-value=28 Score=28.15 Aligned_cols=164 Identities=8% Similarity=-0.048 Sum_probs=105.5
Q ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch---hHHHHHHHHHHHcC-CHHHHHHHHHHhhh---CCcccH---
Q 036775 43 ATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN---LVGNAVINMYVKCG-DVGIAIQVFNMLAY---KDMISW--- 112 (293)
Q Consensus 43 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~--- 112 (293)
.....+...+.+.|+.++..+++.......+.-+-. .....+++.+.... ..+.-.++..+..+ ..-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888999998888888876633333333 33467777777654 33444444444432 122334
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-----HhHHHHHHHHHhcCCChhHHHHHHHHhhhhc-CCCcchhHH
Q 036775 113 ---STVISGLAMNGCGRQALQLFSLMIINGVFPD-----DVTFIALISACSHGGLVDQGLILFKAMSTVY-EIVPQTQHY 183 (293)
Q Consensus 113 ---~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 183 (293)
..++..|...|++.+|.+++.++.+.=-..| ...+..-+..|...+++.++...+....... .+.+++.+-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2578899999999999999999876311112 2456667777889999999999998876532 222333222
Q ss_pred ----HHHHHHHH-hcCChHHHHHHHHhC
Q 036775 184 ----ACVVDMYG-RAGLLEEAEAFIREM 206 (293)
Q Consensus 184 ----~~l~~~~~-~~g~~~~a~~~~~~~ 206 (293)
..-...+. ..++|.+|...|-+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 22233456 789999998877654
No 280
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=73.98 E-value=18 Score=26.82 Aligned_cols=84 Identities=11% Similarity=0.027 Sum_probs=42.5
Q ss_pred HHHHHhcCChHHHHHHHHhC-----CCCc----hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHh
Q 036775 187 VDMYGRAGLLEEAEAFIREM-----PIEA----EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFA 257 (293)
Q Consensus 187 ~~~~~~~g~~~~a~~~~~~~-----~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 257 (293)
++.+....++++|..++++. +..+ ........+..-........+..+.+.+.. ...+......+..+.
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~--~~~~~~~r~~v~~L~ 102 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS--SNEIVHLKSGTENMI 102 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Confidence 44555666666666666554 1111 111222223333333334444444444422 334555566667777
Q ss_pred cCCCHHHHHHHHHHH
Q 036775 258 GADRWEDANKIRDEI 272 (293)
Q Consensus 258 ~~g~~~~a~~~~~~m 272 (293)
+.|+-++|.++|=+.
T Consensus 103 rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 103 KLGLPEQALDLFLQN 117 (235)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HCCChhHHHHHHHHH
Confidence 778888887777554
No 281
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=71.90 E-value=28 Score=25.80 Aligned_cols=91 Identities=18% Similarity=0.064 Sum_probs=51.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcc-CCCc----hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775 11 TMIGGYAERGFCEEAVSVFQEMEKTK-EAEP----NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI 85 (293)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~-~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 85 (293)
--++.+....++++|++++++..+.- +.++ +.......+..-.....-..+..+.+.+ . . .++.......+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~-~--~~~~~~~r~~v 98 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-L-S--SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-H-T--CSSHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-H-h--cCCHHHHHHHH
Confidence 34678888999999999998876531 0221 1122233344333333344444444444 2 1 33444445666
Q ss_pred HHHHHcCCHHHHHHHHHHhh
Q 036775 86 NMYVKCGDVGIAIQVFNMLA 105 (293)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~ 105 (293)
..+.+.|+-++|.++|-+..
T Consensus 99 ~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHHH
Confidence 77777788888877775543
No 282
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=71.72 E-value=27 Score=25.59 Aligned_cols=29 Identities=14% Similarity=-0.031 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhcCChhhchHHHHHHHhhc
Q 036775 214 VWGALLNACRIHRNDEMFDPIRQELVNKK 242 (293)
Q Consensus 214 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 242 (293)
.|......+-..|++..|..+|+...+..
T Consensus 152 fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 152 FYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34444444555555555555555555444
No 283
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=70.95 E-value=24 Score=24.79 Aligned_cols=144 Identities=16% Similarity=0.009 Sum_probs=79.0
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh
Q 036775 76 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155 (293)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 155 (293)
++..+....+..+.+.+..+....+.+.+..++...-...+.++...++.+....+. ++.. .++...-...+.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLI-KALK---DEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---CCCHHHHHHHHHHHH
Confidence 455555555666666666444445555555556656666666777777654443333 3333 356666667777777
Q ss_pred cCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChh
Q 036775 156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229 (293)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (293)
+.++.+....+.+ +.. .++..+-...+.++.+.+..+....+.+.+. .++...-...+.++...|..+
T Consensus 102 ~~~~~~~~~~L~~-~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~~~~~ 169 (201)
T 3ltj_A 102 QIGDERAVEPLIK-ALK----DEDWFVRIAAAFALGEIGDERAVEPLIKALK-DEDGWVRQSAADALGEIGGER 169 (201)
T ss_dssp HHCCGGGHHHHHH-HTT----CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCSHH
T ss_pred HhCcHHHHHHHHH-HHc----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCchh
Confidence 7776544333333 332 3455555566667777666443333333333 455555555566666665544
No 284
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=70.81 E-value=4.6 Score=22.44 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHccCCCchHH
Q 036775 20 GFCEEAVSVFQEMEKTKEAEPNEA 43 (293)
Q Consensus 20 ~~~~~a~~~~~~m~~~~~~~p~~~ 43 (293)
-+++.|...|.++...|.++|+..
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHh
Confidence 478999999999988876777653
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=70.70 E-value=20 Score=23.62 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccC--cchHHHHHHHHHHh
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS--ALSFGQYVHSYIST 70 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~ 70 (293)
..+.++.-|...|+.++|...++++.... -........+..+.-+.+ ..+.+..++..+.+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~--f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~ 71 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH--FHHELVYEAIVMVLESTGESAFKMILDLLKSLWK 71 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG--GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 35678899999999999999999885321 111223333333333332 23445555555554
No 286
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=70.22 E-value=29 Score=25.40 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhCCcc-----cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 036775 95 GIAIQVFNMLAYKDMI-----SWSTVISGLAMNGCGRQALQLFSLMIINGVFPD 143 (293)
Q Consensus 95 ~~A~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 143 (293)
+.+..+|..|....+- .|......+...|++.+|.++|..-.+.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3555666666555332 355566666666777777777776666665553
No 287
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=68.96 E-value=24 Score=24.00 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEME 33 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~ 33 (293)
..+.+|.-|...|+.++|...++++.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 35678889999999999999999884
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=68.59 E-value=26 Score=24.23 Aligned_cols=33 Identities=9% Similarity=0.141 Sum_probs=15.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 036775 247 GTFALMSNTFAGADRWEDANKIRDEIRRMGLKK 279 (293)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 279 (293)
..|......+-..|++.+|.++|+.=++.+-+|
T Consensus 97 lfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 97 QFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 334444444444555555555554444443333
No 289
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=68.17 E-value=19 Score=22.56 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHH
Q 036775 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFI 203 (293)
Q Consensus 124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 203 (293)
..++|.-+-+.+...+. ....-.+-+..+...|++++|..+.+.+- .||...|.+| +-.+.|..+++...+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~AL--ce~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLAL--CEYRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHH--HHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHH--HHHhcccHHHHHHHH
Confidence 34555555555444433 11111122233445556655555544332 3555555444 233455555555555
Q ss_pred HhC
Q 036775 204 REM 206 (293)
Q Consensus 204 ~~~ 206 (293)
.++
T Consensus 93 ~~l 95 (116)
T 2p58_C 93 NRL 95 (116)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 290
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=66.48 E-value=16 Score=25.62 Aligned_cols=21 Identities=5% Similarity=-0.054 Sum_probs=13.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhh
Q 036775 85 INMYVKCGDVGIAIQVFNMLA 105 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~ 105 (293)
+...+..|+.+....++..-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTT
T ss_pred HHHHHHhccHHHHHHHHHcCC
Confidence 344456677777777776443
No 291
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=66.21 E-value=30 Score=23.96 Aligned_cols=48 Identities=13% Similarity=0.099 Sum_probs=27.8
Q ss_pred HHHHHHHhhhCCcc-----cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH
Q 036775 97 AIQVFNMLAYKDMI-----SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD 144 (293)
Q Consensus 97 A~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 144 (293)
+..+|..|....+- .|......+...|++.+|.++|..-.+.+-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 44556555554332 2555555566666666666666666666666543
No 292
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=66.04 E-value=21 Score=23.93 Aligned_cols=62 Identities=11% Similarity=0.008 Sum_probs=35.3
Q ss_pred HHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChH
Q 036775 134 LMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLE 197 (293)
Q Consensus 134 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 197 (293)
.+++.|.+++.. -..++..+...+..-.|.++++.+.+ .+...+..|...-++.+...|-+.
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEG-KFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGG-GCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHH-hCCCCChhhHHHHHHHHHHCCCEE
Confidence 455666665543 23344444455566677777777765 344445555555666677666543
No 293
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=65.62 E-value=67 Score=27.82 Aligned_cols=113 Identities=11% Similarity=-0.028 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhCCCCCcHhHH----HHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHH
Q 036775 124 CGRQALQLFSLMIINGVFPDDVTF----IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199 (293)
Q Consensus 124 ~~~~a~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 199 (293)
+.+.|...+....+.+. .+.... ..+.......+...++...+..... . ..+.......+..-.+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-R--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-T--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc-c--CCChHHHHHHHHHHHHCCCHHHH
Confidence 66777777777654322 122222 2222222333424455555554332 1 12322233333444456777777
Q ss_pred HHHHHhCCCCc-h-HhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775 200 EAFIREMPIEA-E-WSVWGALLNACRIHRNDEMFDPIRQELVN 240 (293)
Q Consensus 200 ~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (293)
...|+.|...+ + ..-..-+.+++...|+.++|..+|+.+..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777774322 1 11122234455667777777777666543
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.44 E-value=38 Score=28.52 Aligned_cols=64 Identities=8% Similarity=0.013 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchH--HHH-HHHHHHhcccCcchHHHHHHHHHHh
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNE--ATL-VNVLSACSSISALSFGQYVHSYIST 70 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~--~~~-~~ll~~~~~~~~~~~a~~~~~~~~~ 70 (293)
..+|.++..|...+.++.|..+..+..--....+|. ..| ..+.+.+.-.+++.+|.+.+.....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 346666666666666666666666552100001111 112 1233445555666666666665543
No 295
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=65.20 E-value=30 Score=23.60 Aligned_cols=51 Identities=8% Similarity=0.026 Sum_probs=35.2
Q ss_pred hhchHHHHHHHhhc--CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 036775 229 EMFDPIRQELVNKK--GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKK 279 (293)
Q Consensus 229 ~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 279 (293)
+....+|..+...+ ......|......+...|++++|.++|+.=.+.+-+|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34667777776655 3345567777777778888888888887766666555
No 296
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=64.82 E-value=36 Score=24.41 Aligned_cols=206 Identities=6% Similarity=-0.054 Sum_probs=97.0
Q ss_pred HhcccCcchHHHHHHHHHHhhcCCCCchh--HHHHHHHHHHHcCCHHHHHHHHHHhhhCCc----ccHHHHHHHHHhcCC
Q 036775 51 ACSSISALSFGQYVHSYISTRYDLSVSNL--VGNAVINMYVKCGDVGIAIQVFNMLAYKDM----ISWSTVISGLAMNGC 124 (293)
Q Consensus 51 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~ 124 (293)
..++.|+.+....+++ .|..++.. .-...+...+..|+.+-+.-+++.-...+. ..++ .+...+..|+
T Consensus 15 ~A~~~g~~~~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t-~L~~A~~~~~ 88 (240)
T 3eu9_A 15 KATQYGIYERCRELVE-----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNST-PLHWATRQGH 88 (240)
T ss_dssp HHHHTTCHHHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBC-HHHHHHHHTC
T ss_pred HHHHcCChHHHHHHHH-----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCC-hhHHHHHcCC
Confidence 3456677666655554 34443322 123456667788888877777765543321 1223 3344455666
Q ss_pred HHHHHHHHHHHHhCCCCCcH---hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcch---hHHHHHHHHHHhcCChHH
Q 036775 125 GRQALQLFSLMIINGVFPDD---VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT---QHYACVVDMYGRAGLLEE 198 (293)
Q Consensus 125 ~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~ 198 (293)
.+-+ +.+.+.|..++. ...+.+ ...+..|+.+-+..+++ .|..++. .-.+.+..+ +..+...+
T Consensus 89 ~~~v----~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~Ll~-----~~~~~~~~~~~g~t~l~~a-~~~~~~~~ 157 (240)
T 3eu9_A 89 LSMV----VQLMKYGADPSLIDGEGCSCI-HLAAQFGHTSIVAYLIA-----KGQDVDMMDQNGMTPLMWA-AYRTHSVD 157 (240)
T ss_dssp HHHH----HHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHH-----TTCCTTCCCTTSCCHHHHH-HHHCCSST
T ss_pred HHHH----HHHHHcCCCCcccCCCCCCHH-HHHHHcCHHHHHHHHHh-----cCCCccccCCCCCcHHHHH-HHhCChHH
Confidence 5544 344455555442 222333 33445566654444443 2333322 222333333 33445455
Q ss_pred HHHHHHhCCCCchHh---HHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 199 AEAFIREMPIEAEWS---VWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 199 a~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
..+++.+.+..++.. .-.+.+......|+.+.+..+++.-......+..-. +-+....+.|+.+-+.-+++.-.+
T Consensus 158 ~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHhhhc
Confidence 556666553333211 111234455567777766655544221111121112 234555667777766666554433
No 297
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=64.29 E-value=35 Score=24.15 Aligned_cols=145 Identities=14% Similarity=-0.014 Sum_probs=85.9
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 036775 75 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154 (293)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 154 (293)
.++..+-...+..+.+.|..+....+.+.+..++...-...+.++.+.++.+.. ..+.++.. .++...-...+.++
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~~aL 105 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAVAL 105 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHHHH
Confidence 356666667777777777755555555555566666666777777777765443 33333332 35666666777777
Q ss_pred hcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChh
Q 036775 155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229 (293)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (293)
.+.++.+.. ..+..+.. .++..+-...+.++.+.|..+....+.+.+. .++...-...+.++...+..+
T Consensus 106 ~~~~~~~~~-~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~~ 174 (211)
T 3ltm_A 106 GQIGDERAV-EPLIKALK----DEDWFVRIAAAFALGEIGDERAVEPLIKALK-DEDGWVRQSAADALGEIGGER 174 (211)
T ss_dssp HHHCCGGGH-HHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCSHH
T ss_pred HHhCcHHHH-HHHHHHHh----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCchh
Confidence 777765444 33333433 3566666666777777776543333333333 555555555666666666533
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.11 E-value=71 Score=26.92 Aligned_cols=60 Identities=18% Similarity=0.146 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCc-ccHHH-------HHHHHHhcCCHHHHHHHHHHHHhC
Q 036775 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDM-ISWST-------VISGLAMNGCGRQALQLFSLMIIN 138 (293)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~-------li~~~~~~~~~~~a~~~~~~m~~~ 138 (293)
.++|.++..|...+.++.|..+..+..-|.. ..-+. +...+.-.+++.+|.+.+......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4457777777777777777777777765522 12111 234455567777777777766543
No 299
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=61.87 E-value=79 Score=29.08 Aligned_cols=51 Identities=8% Similarity=-0.077 Sum_probs=32.9
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 150 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
++..|...|..+-+.++...+ +.+...--.+..+|...|++++|.+.|++.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455556666666554433222 234433345778888999999999999887
No 300
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=60.71 E-value=24 Score=24.27 Aligned_cols=70 Identities=10% Similarity=0.092 Sum_probs=41.2
Q ss_pred HHHHHHHH-HHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhc--CCCcchhHHHHHHHHHHhcCChH
Q 036775 126 RQALQLFS-LMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY--EIVPQTQHYACVVDMYGRAGLLE 197 (293)
Q Consensus 126 ~~a~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 197 (293)
+.+++-+. .+++.|.+++. .-..++..+...+..-.|.++++.+.+ . +...+..|...-++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~-~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQ-AEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHH-HCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34444333 34556777554 334555666666677778888888775 3 33445555555566777777543
No 301
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=60.37 E-value=22 Score=22.02 Aligned_cols=37 Identities=22% Similarity=0.037 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHH
Q 036775 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL 129 (293)
Q Consensus 93 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 129 (293)
..++|.++++.+..++..+|..++.++...|+..-|.
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 4566666666666666666666666665555554443
No 302
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=59.44 E-value=91 Score=27.28 Aligned_cols=91 Identities=9% Similarity=0.047 Sum_probs=48.5
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCchHh--HHHHHHHHHHhcC---C-------------hhhchHHHHHHHhh-------
Q 036775 187 VDMYGRAGLLEEAEAFIREMPIEAEWS--VWGALLNACRIHR---N-------------DEMFDPIRQELVNK------- 241 (293)
Q Consensus 187 ~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~l~~~~~~~~---~-------------~~~a~~~~~~~~~~------- 241 (293)
..-+...|++++|..+|.-.+ ..|.+ ..|.++.-....- . ...|..+.+.....
T Consensus 450 A~~ae~~G~~~dAi~LY~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~ 528 (661)
T 2qx5_A 450 ARRADEDGRIYDSILLYQLAE-EYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQI 528 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTS
T ss_pred HHHHHHCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhc
Confidence 345667888888888888886 33322 4555544432111 1 12333333332221
Q ss_pred cCCchhhHHHHHHH-----HhcCCCHHHHHHHHHHHHHcCCCCCC
Q 036775 242 KGVSVGTFALMSNT-----FAGADRWEDANKIRDEIRRMGLKKKT 281 (293)
Q Consensus 242 ~~~~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~~~~~p~~ 281 (293)
.+.+..|+..|+.. +.+.|+++.|.+.++++ ++-|..
T Consensus 529 ~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L---~llPl~ 570 (661)
T 2qx5_A 529 HVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL---DLLPFS 570 (661)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT---SCSCC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCC
Confidence 01234455555443 26889999998877654 466644
No 303
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=58.61 E-value=41 Score=26.48 Aligned_cols=60 Identities=17% Similarity=-0.012 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcc-cCcchHHHHHHHHHHh
Q 036775 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS-ISALSFGQYVHSYIST 70 (293)
Q Consensus 9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~ 70 (293)
.+.++.-|...|+.++|...++++.... ..| ......+..+.-+ ....+.+..++..+.+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~-~~~-~~v~~~i~~~le~~~~~re~~~~Ll~~L~~ 74 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPS-LLF-IFVRHGVESTLERSAIAREHMGQLLHQLLC 74 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG-GHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcc-cHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999885322 111 2223333333322 2234555666666665
No 304
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=57.59 E-value=22 Score=23.32 Aligned_cols=42 Identities=17% Similarity=0.024 Sum_probs=18.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC
Q 036775 117 SGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158 (293)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 158 (293)
..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 18 ~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 18 TLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 333334444445555555544444444444444444444433
No 305
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=57.50 E-value=42 Score=23.21 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=22.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036775 9 WTTMIGGYAERGFCEEAVSVFQEMEK 34 (293)
Q Consensus 9 y~~li~~~~~~~~~~~a~~~~~~m~~ 34 (293)
...+|.-|...|+.++|...++++..
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 46688899999999999999999853
No 306
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=56.21 E-value=54 Score=25.66 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=17.0
Q ss_pred HhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775 136 IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171 (293)
Q Consensus 136 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 171 (293)
.+.|+.|...++.-++..+.+.=.++.+..+|+.+.
T Consensus 220 ~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l 255 (334)
T 2qq8_A 220 KKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFC 255 (334)
T ss_dssp HHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHH
T ss_pred HHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 344444444444444444444444445555555444
No 307
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=56.14 E-value=31 Score=23.33 Aligned_cols=62 Identities=6% Similarity=0.035 Sum_probs=34.3
Q ss_pred HHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCCh
Q 036775 133 SLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLL 196 (293)
Q Consensus 133 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 196 (293)
+.+++.|.+++. .-..++..+...+..-.|.++++.+.+ .+...+..|....++.+...|-+
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQ-KDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHH-HSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHH-hCCCCCHhhHHHHHHHHHHCCcE
Confidence 345566666443 233444455555566677777777765 34444555555556666766654
No 308
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=55.79 E-value=59 Score=23.98 Aligned_cols=214 Identities=13% Similarity=0.055 Sum_probs=103.8
Q ss_pred HHHHHhcccCcchHHHHHHHHHHhhcCCCCchh---HHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHH
Q 036775 47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNL---VGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLA 120 (293)
Q Consensus 47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~ 120 (293)
..+...++.|+.+....+++. |..++.. .-...+...+..|+.+-+..+++.-..+ +....+.+ ...+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~ 80 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEG-----GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF-LLAA 80 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHc-----CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHH-HHHH
Confidence 344555667777666655543 4333321 1124566667788888777777654333 22233333 3344
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCcH---hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchh------------HHHH
Q 036775 121 MNGCGRQALQLFSLMIINGVFPDD---VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ------------HYAC 185 (293)
Q Consensus 121 ~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------~~~~ 185 (293)
..|+.+- ++.+.+.|..++. ..++.+. ..+..|+.+-+..+++. |..++.. .-..
T Consensus 81 ~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~~~~~Ll~~-----g~~~~~~~~~~~~~~~~~~~g~t 150 (285)
T 1wdy_A 81 IAGSVKL----LKLFLSKGADVNECDFYGFTAFM-EAAVYGKVKALKFLYKR-----GANVNLRRKTKEDQERLRKGGAT 150 (285)
T ss_dssp HHTCHHH----HHHHHHTTCCTTCBCTTCCBHHH-HHHHTTCHHHHHHHHHT-----TCCTTCCCCCCHHHHHTTCCCCC
T ss_pred HcCCHHH----HHHHHHcCCCCCccCcccCCHHH-HHHHhCCHHHHHHHHHh-----CCCcccccccHHHHHhhccCCCc
Confidence 5566554 4444455655432 2223333 34456666554444433 3333211 0012
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCch---HhHHHHHHHHHHhcCChhhchHHHHHHHhhc-CCc---hhhHHHHHHHHhc
Q 036775 186 VVDMYGRAGLLEEAEAFIREMPIEAE---WSVWGALLNACRIHRNDEMFDPIRQELVNKK-GVS---VGTFALMSNTFAG 258 (293)
Q Consensus 186 l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~li~~~~~ 258 (293)
.+...+..|+.+-+..+++..+..++ ..-.+.+ ......+.......+.+.+.+.+ .++ ..-. +.+...++
T Consensus 151 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~-t~L~~A~~ 228 (285)
T 1wdy_A 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGK-TPLILAVE 228 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSC-CHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCC-cHHHHHHH
Confidence 33445567888888888877533322 1112222 33344555555556666665544 222 1112 23344455
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCC
Q 036775 259 ADRWEDANKIRDEIRRMGLKKKT 281 (293)
Q Consensus 259 ~g~~~~a~~~~~~m~~~~~~p~~ 281 (293)
.|+.+-+..+++ ..|..++.
T Consensus 229 ~~~~~~v~~Ll~---~~g~~~~~ 248 (285)
T 1wdy_A 229 KKHLGLVQRLLE---QEHIEIND 248 (285)
T ss_dssp TTCHHHHHHHHH---SSSCCTTC
T ss_pred cCCHHHHHHHHh---ccCCCccc
Confidence 677654444432 15655553
No 309
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=54.27 E-value=94 Score=25.83 Aligned_cols=43 Identities=9% Similarity=0.032 Sum_probs=20.0
Q ss_pred CCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHH
Q 036775 139 GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183 (293)
Q Consensus 139 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 183 (293)
|++--...|..-...+...|++++|-++--...+ |+--+..|+
T Consensus 356 ~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti 398 (494)
T 1bpo_A 356 NLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTI 398 (494)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHH
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHH
Confidence 3333334444445555555555555555444432 333344443
No 310
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=54.25 E-value=35 Score=26.75 Aligned_cols=216 Identities=10% Similarity=-0.032 Sum_probs=107.7
Q ss_pred CchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH--HHHHHHHHHHcCCHHHHHHHHHHhhhCCc-ccHHHH
Q 036775 39 EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV--GNAVINMYVKCGDVGIAIQVFNMLAYKDM-ISWSTV 115 (293)
Q Consensus 39 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l 115 (293)
..|..-+..|. ..+..|+.+.+..+++. |..++... -.+.+...+..|+.+-+.-+++.-...+. ..++ .
T Consensus 15 ~~d~~g~t~L~-~Aa~~g~~~~v~~Ll~~-----g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t-~ 87 (364)
T 3ljn_A 15 KSDDENMEKIH-VAARKGQTDEVRRLIET-----GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQK-P 87 (364)
T ss_dssp -CCHHHHHHHH-HHHHHTCHHHHHHHHHT-----TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBC-H
T ss_pred ccCCCCCCHHH-HHHHcCCHHHHHHHHHc-----CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCC-H
Confidence 34555554444 44566777666666543 44443321 12345566677888887777776554433 2233 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcH--------------------hHHHHHHHHHhcCC--ChhHHHHHHHHhhhh
Q 036775 116 ISGLAMNGCGRQALQLFSLMIINGVFPDD--------------------VTFIALISACSHGG--LVDQGLILFKAMSTV 173 (293)
Q Consensus 116 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~--------------------~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~ 173 (293)
+...+..|+.+-+..+++.....|..|+. .-.+.|..+ +..| +.+-+..+++.
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A-~~~g~~~~~~v~~Ll~~---- 162 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWC-VGLGPEYLEMIKILVQL---- 162 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHH-HHSCGGGHHHHHHHHHH----
T ss_pred HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHH-HHcCCchHHHHHHHHHc----
Confidence 44455678888888777776666766554 123344433 4445 44444433332
Q ss_pred cCCCcch---hHHHHHHHHHHhcCChHHHHHHHHhCCC----Cc---hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcC
Q 036775 174 YEIVPQT---QHYACVVDMYGRAGLLEEAEAFIREMPI----EA---EWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243 (293)
Q Consensus 174 ~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 243 (293)
|..++. .-.+.| ..-+..|+.+-+..+++.-.. .+ +..-. +.+...+..|+.+.+..+++.-.....
T Consensus 163 -ga~~~~~d~~g~t~L-~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~gad~~~ 239 (364)
T 3ljn_A 163 -GASPTAKDKADETPL-MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN-SHLHWAILINWEDVAMRFVEMGIDVNM 239 (364)
T ss_dssp -TCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC-CTTHHHHTTTCHHHHHHHHTTTCCTTC
T ss_pred -CCCCcccCCCCCCHH-HHHHHcCCHHHHHHHHhcccccccccccccCCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 433332 222333 344567787777777765311 01 11111 223334566766655554432211112
Q ss_pred CchhhHHHHHHHHhcCCCHHHHHHHHH
Q 036775 244 VSVGTFALMSNTFAGADRWEDANKIRD 270 (293)
Q Consensus 244 ~~~~~~~~li~~~~~~g~~~~a~~~~~ 270 (293)
.+..-.+. +...+..|+.+-+.-+++
T Consensus 240 ~d~~g~tp-L~~A~~~g~~~~v~~Ll~ 265 (364)
T 3ljn_A 240 EDNEHTVP-LYLSVRAAMVLLTKELLQ 265 (364)
T ss_dssp CCTTSCCH-HHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCH-HHHHHHhChHHHHHHHHH
Confidence 22222223 334445577665555554
No 311
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=53.24 E-value=19 Score=23.96 Aligned_cols=47 Identities=11% Similarity=-0.043 Sum_probs=24.2
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCCh
Q 036775 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLL 196 (293)
Q Consensus 149 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 196 (293)
.++..+...+..-.|.++++.+.+ .+...+..|...-++.+...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~-~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKH-KGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHCCCE
Confidence 344444444455556666666654 33334444444455555555544
No 312
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=52.91 E-value=78 Score=24.52 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEMEK 34 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~~ 34 (293)
....+|.-|...|+.++|...++++..
T Consensus 5 ~~~~ii~EYf~~~d~~Ea~~~l~el~~ 31 (307)
T 2zu6_B 5 TLTPIIQEYFEHGDTNEVAEMLRDLNL 31 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 346789999999999999999998743
No 313
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=52.87 E-value=50 Score=23.60 Aligned_cols=211 Identities=14% Similarity=0.096 Sum_probs=96.0
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHH--HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH--
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA--TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV-- 80 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-- 80 (293)
|....+.|.. .++.|+.+.+..+++ .| ..++.. .-.+.+...+..|+.+-+..+++. +..++...
T Consensus 6 d~~~~~~l~~-A~~~g~~~~~~~Ll~----~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----~~~~~~~~~~ 74 (240)
T 3eu9_A 6 DDYSTWDIVK-ATQYGIYERCRELVE----AG-YDVRQPDKENVTLLHWAAINNRIDLVKYYISK-----GAIVDQLGGD 74 (240)
T ss_dssp SCGGGCCHHH-HHHTTCHHHHHHHHH----TT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----TCCTTCCBTT
T ss_pred ccccchHHHH-HHHcCChHHHHHHHH----cC-CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHc-----CCcchhhcCC
Confidence 3333444444 566777766655544 33 333321 122345555666776655555443 33222111
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH---hHHHHHHHH
Q 036775 81 -GNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD---VTFIALISA 153 (293)
Q Consensus 81 -~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~ 153 (293)
-...+...+..|+.+-+..+++.-..+ +...++.+ ...+..|+.+- ++.+.+.|..++. ...+.+..+
T Consensus 75 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~----~~~Ll~~~~~~~~~~~~g~t~l~~a 149 (240)
T 3eu9_A 75 LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCI-HLAAQFGHTSI----VAYLIAKGQDVDMMDQNGMTPLMWA 149 (240)
T ss_dssp TTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHcCHHHH----HHHHHhcCCCccccCCCCCcHHHHH
Confidence 123455556677877766666543332 23333333 34455666553 4444445554432 333444444
Q ss_pred HhcCCChhHHHHHHHHhhhhcCCCcchh---HHHHHHHHHHhcCChHHHHHHHHhCCCCchHhH--HHHHHHHHHhcCCh
Q 036775 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQ---HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV--WGALLNACRIHRND 228 (293)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~ 228 (293)
+...+.. ...+++... +..++.. .-...+...+..|+.+-+..+++.- ..++... -.+-+....+.|+.
T Consensus 150 ~~~~~~~-~~~~~L~~~----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~ 223 (240)
T 3eu9_A 150 AYRTHSV-DPTRLLLTF----NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANVDAQNIKGESALDLAKQRKNV 223 (240)
T ss_dssp HHHCCSS-TTHHHHHHT----TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCBCTTSCBHHHHHHHTTCH
T ss_pred HHhCChH-HHHHHHHhc----CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcH
Confidence 4343333 333333332 2222211 1112344455677777666666553 2222110 01233344556666
Q ss_pred hhchHHHHH
Q 036775 229 EMFDPIRQE 237 (293)
Q Consensus 229 ~~a~~~~~~ 237 (293)
+.+..+.+.
T Consensus 224 ~~v~~L~~~ 232 (240)
T 3eu9_A 224 WMINHLQEA 232 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 655555443
No 314
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=52.33 E-value=48 Score=25.97 Aligned_cols=213 Identities=12% Similarity=0.028 Sum_probs=100.8
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHH--HHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEAT--LVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN 82 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (293)
|..-++.|. ..+..|+.+.+..+++ .| ..++... -.+.+...+..|+.+-+..+++. |..++...-.
T Consensus 17 d~~g~t~L~-~Aa~~g~~~~v~~Ll~----~g-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~g~ 85 (364)
T 3ljn_A 17 DDENMEKIH-VAARKGQTDEVRRLIE----TG-VSPTIQNRFGCTALHLACKFGCVDTAKYLASV-----GEVHSLWHGQ 85 (364)
T ss_dssp CHHHHHHHH-HHHHHTCHHHHHHHHH----TT-CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH-----CCCCCCBTTB
T ss_pred CCCCCCHHH-HHHHcCCHHHHHHHHH----cC-CCccccCCCCCcHHHHHHHcCCHHHHHHHHHC-----CCCccccCCC
Confidence 444455444 4556788776655554 34 4444321 12344455556766655555443 4444332223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhC------------------------CcccHHHHHHHHHhcC--CHHHHHHHHHHHH
Q 036775 83 AVINMYVKCGDVGIAIQVFNMLAYK------------------------DMISWSTVISGLAMNG--CGRQALQLFSLMI 136 (293)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~------------------------~~~~~~~li~~~~~~~--~~~~a~~~~~~m~ 136 (293)
..+...+..|+.+-+..+++..... +..-++.|. ..+..| +.+-+..++
T Consensus 86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~~~v~~Ll---- 160 (364)
T 3ljn_A 86 KPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALH-WCVGLGPEYLEMIKILV---- 160 (364)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHH-HHHHSCGGGHHHHHHHH----
T ss_pred CHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHH-HHHHcCCchHHHHHHHH----
Confidence 3455566778888888887764321 112233444 344556 444443333
Q ss_pred hCCCCCcH---hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc---hhHHHHHHHHHHhcCChHHHHHHHHhCCCCc
Q 036775 137 INGVFPDD---VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ---TQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210 (293)
Q Consensus 137 ~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 210 (293)
+.|..++. .-.+.|. ..+..|+.+-+..+++.-....+..++ ..-.+.| ..-+..|+.+-+..+++ .+..+
T Consensus 161 ~~ga~~~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~-~gad~ 237 (364)
T 3ljn_A 161 QLGASPTAKDKADETPLM-RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWEDVAMRFVE-MGIDV 237 (364)
T ss_dssp HHTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHHHHHHHHT-TTCCT
T ss_pred HcCCCCcccCCCCCCHHH-HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHHHHHHHHH-cCCCC
Confidence 33555443 2233444 445667777666666543211111121 1122223 23446676665555554 43333
Q ss_pred hH---hHHHHHHHHHHhcCChhhchHHHHH
Q 036775 211 EW---SVWGALLNACRIHRNDEMFDPIRQE 237 (293)
Q Consensus 211 ~~---~~~~~l~~~~~~~~~~~~a~~~~~~ 237 (293)
+. .-.+ -+......|+.+.+..+++.
T Consensus 238 ~~~d~~g~t-pL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 238 NMEDNEHTV-PLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TCCCTTSCC-HHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCC-HHHHHHHhChHHHHHHHHHc
Confidence 21 1112 23333455666555555443
No 315
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=52.20 E-value=53 Score=23.54 Aligned_cols=45 Identities=11% Similarity=0.253 Sum_probs=24.5
Q ss_pred hhHHHHHHHHhhhhcCCCcchhHHHHH-----HHHHHhcCChHHHHHHHHhC
Q 036775 160 VDQGLILFKAMSTVYEIVPQTQHYACV-----VDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~~a~~~~~~~ 206 (293)
++.|+.+|+.+.+.. ++-......| +-.|.+.|.+++|.++|++.
T Consensus 94 LESAl~v~~~I~~e~--~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 94 LESALMIWGSIEKEH--DKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERI 143 (211)
T ss_dssp HHHHHHHHTTSCSCC--CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 566777777776522 1111112222 23466777777777777773
No 316
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=52.02 E-value=56 Score=22.63 Aligned_cols=82 Identities=7% Similarity=-0.004 Sum_probs=35.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH--HHHHHHHHHHcC
Q 036775 15 GYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV--GNAVINMYVKCG 92 (293)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 92 (293)
..+..|+.+.+..++..-...- ...|..-++ .+...+..|+.+-+..++ + .|..++... -...+...+..|
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t-~L~~A~~~~~~~~v~~Ll----~-~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQV-DEVDTEGNT-PLNIAVHNNDIEIAKALI----D-RGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCT-TCCCTTSCC-HHHHHHHHTCHHHHHHHH----H-TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHcCCCCC-CCCCCCCCC-HHHHHHHcCCHHHHHHHH----H-cCCCCCCCCCCCCCHHHHHHHcC
Confidence 3456677777766665322110 111221122 223333445544443333 3 344433221 122344445566
Q ss_pred CHHHHHHHHHH
Q 036775 93 DVGIAIQVFNM 103 (293)
Q Consensus 93 ~~~~A~~~~~~ 103 (293)
+.+-+..+++.
T Consensus 84 ~~~~~~~Ll~~ 94 (201)
T 3hra_A 84 RTEILAYMLKH 94 (201)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 76666666643
No 317
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=51.46 E-value=51 Score=25.54 Aligned_cols=60 Identities=17% Similarity=0.272 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCC---cccHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 036775 82 NAVINMYVKCGDVGIAIQVFNMLAYKD---MISWSTVISGLAMNGC--GRQALQLFSLMIINGVF 141 (293)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~ 141 (293)
..++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+.+.|+-
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 455666666666666666666665441 1222333333333222 33445555555554443
No 318
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=51.45 E-value=30 Score=25.44 Aligned_cols=56 Identities=9% Similarity=-0.060 Sum_probs=33.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCchHH-------HHHHHHHHh--cccCcchHHHHHHHHHH
Q 036775 13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEA-------TLVNVLSAC--SSISALSFGQYVHSYIS 69 (293)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-------~~~~ll~~~--~~~~~~~~a~~~~~~~~ 69 (293)
+...++.|+.+....+++.+.+.+ ..++.. -...+..+. ++.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~-~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHK-KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHT-CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 445667788888888888776665 444422 223333332 25677777777766543
No 319
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=50.80 E-value=82 Score=24.14 Aligned_cols=113 Identities=11% Similarity=0.053 Sum_probs=55.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH--HHHHHHHHH
Q 036775 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV--GNAVINMYV 89 (293)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 89 (293)
.+...++.|+.+....++......- ...|..- .+.+...+..|+.+-+..+++ .|..++... -.+.+...+
T Consensus 27 ~L~~A~~~g~~~~v~~ll~~~~~~~-~~~d~~g-~t~L~~A~~~g~~~~v~~Ll~-----~g~~~~~~~~~g~t~L~~A~ 99 (351)
T 3utm_A 27 ELLEAARSGNEEKLMALLTPLNVNC-HASDGRK-STPLHLAAGYNRVRIVQLLLQ-----HGADVHAKDKGGLVPLHNAC 99 (351)
T ss_dssp HHHHHHHHTCHHHHHHHCCTTTTTC-CCSSTTC-CCHHHHHHHTTCHHHHHHHHH-----TTCCTTCCCTTCCCHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCC-CCHHHHHHHcCCHHHHHHHHH-----cCCCCCccCCCCCcHHHHHH
Confidence 3445667888888877776422110 1112211 223444445666655544443 344443221 123455566
Q ss_pred HcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHH
Q 036775 90 KCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLF 132 (293)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~ 132 (293)
..|+.+-+.-+++.-... +...++.|. ..+..|+.+-+..++
T Consensus 100 ~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~~v~~Ll 144 (351)
T 3utm_A 100 SYGHYEVTELLLKHGACVNAMDLWQFTPLH-EAASKNRVEVCSLLL 144 (351)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHHTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCCCCCCCCCCCCHHH-HHHHcCCHHHHHHHH
Confidence 778887777777654332 222333333 334567765444443
No 320
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=50.77 E-value=58 Score=22.43 Aligned_cols=54 Identities=9% Similarity=-0.047 Sum_probs=36.2
Q ss_pred HHHcCCHHHHHHHHHHHHHccCCCc--hHHHHHHHHH-H-----hcccCcchHHHHHHHHHHh
Q 036775 16 YAERGFCEEAVSVFQEMEKTKEAEP--NEATLVNVLS-A-----CSSISALSFGQYVHSYIST 70 (293)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~~~~~~p--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~ 70 (293)
+...|++-+|.++|+..-+.. ..+ +...|..+|. . +.+.|+...|..++.....
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~-~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNY-GRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTT-CSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334488888888888876654 344 5566777777 3 3456777777777777655
No 321
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=49.66 E-value=32 Score=19.04 Aligned_cols=25 Identities=8% Similarity=-0.126 Sum_probs=20.2
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCC
Q 036775 257 AGADRWEDANKIRDEIRRMGLKKKT 281 (293)
Q Consensus 257 ~~~g~~~~a~~~~~~m~~~~~~p~~ 281 (293)
...|+.+.|+..+-+|...+..|+.
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 4578899999999888887777765
No 322
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=49.49 E-value=97 Score=24.63 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEMEK 34 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~~ 34 (293)
....+|.-|...++.++|...++++..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 356788899999999999999999753
No 323
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=48.88 E-value=80 Score=23.49 Aligned_cols=27 Identities=4% Similarity=-0.277 Sum_probs=20.4
Q ss_pred CCcchHHHHHHHHHHHHc-CCHHHHHHH
Q 036775 2 PKRDVVSWTTMIGGYAER-GFCEEAVSV 28 (293)
Q Consensus 2 p~p~~~~y~~li~~~~~~-~~~~~a~~~ 28 (293)
|.|.+..|+..+...+.. |++.+++..
T Consensus 125 ~~p~~~aYt~~ll~~a~~~g~~~~~laA 152 (248)
T 3no6_A 125 WPPSGDHYIKHMYFNAFARENAAFTIAA 152 (248)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 457888899988888887 887766443
No 324
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.74 E-value=69 Score=22.95 Aligned_cols=12 Identities=8% Similarity=0.099 Sum_probs=4.6
Q ss_pred cCCHHHHHHHHH
Q 036775 19 RGFCEEAVSVFQ 30 (293)
Q Consensus 19 ~~~~~~a~~~~~ 30 (293)
.|+.+.+..+++
T Consensus 19 ~g~~~~v~~Ll~ 30 (241)
T 1k1a_A 19 QGNLPAVHRLVN 30 (241)
T ss_dssp TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 344333333333
No 325
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=47.22 E-value=36 Score=22.80 Aligned_cols=60 Identities=7% Similarity=-0.064 Sum_probs=32.6
Q ss_pred HHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCCh
Q 036775 134 LMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLL 196 (293)
Q Consensus 134 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 196 (293)
.+++.|++++..= ..++..+...+ .-.|.++++.+.+ .+...+..|...-++.+...|-+
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~-~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRK-TASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHT-TCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHh-hCCCCCHhHHHHHHHHHHHCCcE
Confidence 4455666655432 23333444444 5567777777765 34444555555555666666654
No 326
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=46.94 E-value=29 Score=22.98 Aligned_cols=62 Identities=11% Similarity=0.011 Sum_probs=36.3
Q ss_pred HHHhCCCCCcHhHHHHHHHHHhcCC-ChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChH
Q 036775 134 LMIINGVFPDDVTFIALISACSHGG-LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLE 197 (293)
Q Consensus 134 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 197 (293)
.+++.|.+++..= ..++..+...+ ..-.|.++++.+.+ .+...+..|...-++.+...|-+.
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALME-AGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHh-hCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3556676655432 34444555555 56677888887775 344455555555666777776654
No 327
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=44.86 E-value=83 Score=22.49 Aligned_cols=16 Identities=13% Similarity=0.000 Sum_probs=7.7
Q ss_pred HHHhcCChhhchHHHH
Q 036775 221 ACRIHRNDEMFDPIRQ 236 (293)
Q Consensus 221 ~~~~~~~~~~a~~~~~ 236 (293)
.....|+.+.+..+++
T Consensus 156 ~A~~~~~~~~v~~Ll~ 171 (241)
T 1k1a_A 156 HAVENNSLSMVQLLLQ 171 (241)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3345555555444443
No 328
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=43.82 E-value=70 Score=21.34 Aligned_cols=18 Identities=6% Similarity=0.027 Sum_probs=7.9
Q ss_pred HHHhcCChHHHHHHHHhC
Q 036775 189 MYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 189 ~~~~~g~~~~a~~~~~~~ 206 (293)
.+...+..-.|.++++.+
T Consensus 30 ~L~~~~~~~sa~ei~~~l 47 (145)
T 2fe3_A 30 YLVNSMAHPTADDIYKAL 47 (145)
T ss_dssp HHHHCSSCCCHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHH
Confidence 333334444444454444
No 329
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=43.78 E-value=92 Score=22.71 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=13.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhh
Q 036775 84 VINMYVKCGDVGIAIQVFNMLAY 106 (293)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~ 106 (293)
.+-.|.+.|.+++|.+++++...
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHhcchHHHHHHHHHHhc
Confidence 34455666666666666665544
No 330
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=43.59 E-value=72 Score=21.45 Aligned_cols=55 Identities=16% Similarity=0.036 Sum_probs=23.0
Q ss_pred cCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC---CCCchHhHHHHHHHHHHhcCChh
Q 036775 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM---PIEAEWSVWGALLNACRIHRNDE 229 (293)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 229 (293)
.|++++.. -..++..+...+..-.|.++++.+ .-..+..|...-+..+...|-..
T Consensus 21 ~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 21 NGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp CC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 44444432 122334444444444555555555 11233444444455555554443
No 331
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=42.81 E-value=57 Score=20.05 Aligned_cols=36 Identities=22% Similarity=0.083 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHH
Q 036775 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163 (293)
Q Consensus 124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 163 (293)
..+.|.++++.+...|. ..|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHH
Confidence 45555555555554432 2455555555544444433
No 332
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=42.34 E-value=46 Score=22.43 Aligned_cols=62 Identities=10% Similarity=0.044 Sum_probs=36.3
Q ss_pred HHHhCCCCCcHhHHHHHHHHHhcCC-ChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChH
Q 036775 134 LMIINGVFPDDVTFIALISACSHGG-LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLE 197 (293)
Q Consensus 134 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 197 (293)
.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+ .+...+..|...-++.+...|-+.
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLID-LGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4556676655432 33444555554 56677777777765 344455555555666777776653
No 333
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=41.02 E-value=77 Score=21.16 Aligned_cols=54 Identities=9% Similarity=-0.078 Sum_probs=23.8
Q ss_pred cCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-C--CCchHhHHHHHHHHHHhcCChh
Q 036775 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-P--IEAEWSVWGALLNACRIHRNDE 229 (293)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~--~~~~~~~~~~l~~~~~~~~~~~ 229 (293)
.|++++..= ..++..+...+ .-.|.++++.+ . -..+..|...-+..+...|-..
T Consensus 13 ~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 13 RGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp TTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred cCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 455554421 22333333444 44556665555 1 1223444444455555555443
No 334
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}
Probab=40.81 E-value=1e+02 Score=22.45 Aligned_cols=26 Identities=4% Similarity=-0.252 Sum_probs=19.7
Q ss_pred CCcchHHHHHHHHHHHHc-CCHHHHHH
Q 036775 2 PKRDVVSWTTMIGGYAER-GFCEEAVS 27 (293)
Q Consensus 2 p~p~~~~y~~li~~~~~~-~~~~~a~~ 27 (293)
|.|.+..|...+...+.. |++.+++.
T Consensus 106 ~~p~~~aY~~~l~~~a~~~~~~~~~~a 132 (229)
T 4fn6_A 106 WPPSGDHYIKHMYFQAHSRENAIYTIA 132 (229)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 567788898888888887 88776544
No 335
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=40.69 E-value=38 Score=20.25 Aligned_cols=31 Identities=10% Similarity=0.066 Sum_probs=17.4
Q ss_pred hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHH
Q 036775 160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYG 191 (293)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 191 (293)
.++|...|..|....++.|+. +|...+....
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~ 46 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFS-TWEKELHKIV 46 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHc
Confidence 456666666666656665544 4544444433
No 336
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=40.64 E-value=76 Score=20.85 Aligned_cols=55 Identities=9% Similarity=-0.026 Sum_probs=25.8
Q ss_pred cCCCcchhHHHHHHHHHHhcC-ChHHHHHHHHhC---CCCchHhHHHHHHHHHHhcCChh
Q 036775 174 YEIVPQTQHYACVVDMYGRAG-LLEEAEAFIREM---PIEAEWSVWGALLNACRIHRNDE 229 (293)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 229 (293)
.|++++..= ..++..+...+ ..-.|.++++.+ .-..+..|...-+..+...|-..
T Consensus 12 ~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 12 AGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp TTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred CCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 455554432 23444444444 455566666655 11234444445555555555443
No 337
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=39.95 E-value=98 Score=21.95 Aligned_cols=18 Identities=6% Similarity=-0.326 Sum_probs=8.8
Q ss_pred HHhcccCcchHHHHHHHH
Q 036775 50 SACSSISALSFGQYVHSY 67 (293)
Q Consensus 50 ~~~~~~~~~~~a~~~~~~ 67 (293)
...+..|+.+....++..
T Consensus 11 ~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 11 CNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 334445555555555444
No 338
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=39.73 E-value=20 Score=19.89 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 036775 126 RQALQLFSLMIINGVFPDDVTFIALISAC 154 (293)
Q Consensus 126 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 154 (293)
++|.+.|.+|++..-.++.-||...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34555555554332222334555555444
No 339
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=39.73 E-value=55 Score=20.23 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEK 34 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~ 34 (293)
|+......+..+...++.+++..+++.+..
T Consensus 32 DV~~l~~yL~~lv~~~~lek~~~vlk~l~r 61 (97)
T 4fjo_A 32 DILQVVRYCTDLIEEKDLEKLDLVIKYMKR 61 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHHHH
Confidence 666666667777777777777777666544
No 340
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=39.09 E-value=86 Score=21.06 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC
Q 036775 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158 (293)
Q Consensus 125 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 158 (293)
.-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444433333333333333333333
No 341
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=38.50 E-value=44 Score=18.94 Aligned_cols=45 Identities=13% Similarity=0.103 Sum_probs=28.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhc
Q 036775 111 SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156 (293)
Q Consensus 111 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 156 (293)
.++.+++.++...-.++++..++++.+.|.. +..+|..-++.+++
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~I-~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGTI-PLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 3455666666666677777777777777643 66666655555544
No 342
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=38.17 E-value=69 Score=19.64 Aligned_cols=52 Identities=12% Similarity=0.001 Sum_probs=36.5
Q ss_pred HHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHh-----cccCcchHHHHHHHHHHh
Q 036775 16 YAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSAC-----SSISALSFGQYVHSYIST 70 (293)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~ 70 (293)
+...|++-+|.++++..-+.. ..|....|..+|... .+.|+. |..++.....
T Consensus 11 lfn~g~~~eaHEvlE~~W~~~-~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 11 LWRAGRYYEVHEVLEPYWLKA-TGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHhCCChHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 345599999999999987765 345567788777763 245666 7777766655
No 343
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=37.79 E-value=1.1e+02 Score=21.73 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=11.6
Q ss_pred HHHHHHHcCCHH---HHHHHHHHHHH
Q 036775 12 MIGGYAERGFCE---EAVSVFQEMEK 34 (293)
Q Consensus 12 li~~~~~~~~~~---~a~~~~~~m~~ 34 (293)
.+..+.++|+.+ +|-++.+.|..
T Consensus 37 ~L~eLirs~~PeDL~~AN~LiK~m~~ 62 (186)
T 1oxz_A 37 MLARLLKSSHPEDLRAANKLIKEMVQ 62 (186)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCChhhHHHHHHHHHHHhc
Confidence 344555555443 55555555543
No 344
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=37.70 E-value=1.1e+02 Score=22.05 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=20.5
Q ss_pred CCcchHHHHHHHHHHHHcCCHHHHHH
Q 036775 2 PKRDVVSWTTMIGGYAERGFCEEAVS 27 (293)
Q Consensus 2 p~p~~~~y~~li~~~~~~~~~~~a~~ 27 (293)
|.|.+..|...+...+..|++.+++.
T Consensus 109 ~~p~~~aY~~~l~~~a~~~~~~~~~a 134 (221)
T 3ibx_A 109 PTLANKSYTSYMLAEGFKGSIKEVAA 134 (221)
T ss_dssp CCHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 56788889998888888888777644
No 345
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=37.08 E-value=64 Score=19.51 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCH
Q 036775 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125 (293)
Q Consensus 92 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 125 (293)
...++|.++++.+..++..+|..++.++...+..
T Consensus 50 t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYK 83 (94)
T ss_dssp SHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH
T ss_pred ChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHH
Confidence 3455566666655555555555555555555443
No 346
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=36.87 E-value=67 Score=23.02 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=10.4
Q ss_pred HHhcccCcchHHHHHHHHH
Q 036775 50 SACSSISALSFGQYVHSYI 68 (293)
Q Consensus 50 ~~~~~~~~~~~a~~~~~~~ 68 (293)
..|.+.|.+++|.+++++.
T Consensus 125 ~VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERI 143 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHH
Confidence 3455555555555555554
No 347
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=36.75 E-value=47 Score=20.34 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=19.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775 247 GTFALMSNTFAGADRWEDANKIRDEI 272 (293)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~m 272 (293)
..+......+.+.|+|++|++..+..
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 45667778888888888887776653
No 348
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=36.70 E-value=2.2e+02 Score=24.97 Aligned_cols=22 Identities=5% Similarity=-0.159 Sum_probs=17.6
Q ss_pred HHhcCChHHHHHHHHhCCCCch
Q 036775 190 YGRAGLLEEAEAFIREMPIEAE 211 (293)
Q Consensus 190 ~~~~g~~~~a~~~~~~~~~~~~ 211 (293)
+...|+++.|++.++++++-|.
T Consensus 548 ~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHcCCHHHHHHHHHhCCCCCC
Confidence 3678999999999999866664
No 349
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=36.27 E-value=86 Score=20.23 Aligned_cols=33 Identities=6% Similarity=-0.081 Sum_probs=16.6
Q ss_pred CCchHHHHHHHHHHhcccCcchHHHHHHHHHHh
Q 036775 38 AEPNEATLVNVLSACSSISALSFGQYVHSYIST 70 (293)
Q Consensus 38 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 70 (293)
+.|+...-..-+..+...+++..|.++...+..
T Consensus 57 Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 57 LSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444433333333445555666666666655544
No 350
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=36.17 E-value=46 Score=19.21 Aligned_cols=32 Identities=9% Similarity=0.105 Sum_probs=17.4
Q ss_pred ChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHH
Q 036775 159 LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYG 191 (293)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 191 (293)
..++|...|..|.+..++.|+. +|...+....
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~-tWe~~~~~i~ 44 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNA-SWEQAMKMII 44 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTC-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHc
Confidence 3456666666666655555543 4554444443
No 351
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=35.64 E-value=1.6e+02 Score=23.09 Aligned_cols=73 Identities=11% Similarity=0.050 Sum_probs=36.4
Q ss_pred HHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcC-CHHHHHHHHHHhhhCCcccHHHHHHHHH
Q 036775 46 VNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG-DVGIAIQVFNMLAYKDMISWSTVISGLA 120 (293)
Q Consensus 46 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~li~~~~ 120 (293)
..++.-|...|+.++|.+.++.+.. .... ...+...+..++-+.. ..+.+..++..+.+....+-..+..++.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~-p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~ 88 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELAS-PSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLY 88 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCC-GGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-cccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 4556666777777777777776643 1111 1111222222222211 2344455666666666666666665554
No 352
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=34.64 E-value=1.2e+02 Score=21.44 Aligned_cols=85 Identities=13% Similarity=0.125 Sum_probs=41.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH--HHHHHHHHH
Q 036775 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV--GNAVINMYV 89 (293)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 89 (293)
.+...+..|+.+....+++.-...- ..++..-.. .+...+..|+.+-+..++ + .|..++... -.+.+...+
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t-~L~~A~~~g~~~~v~~Ll----~-~g~~~~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLA-TRTDQDSRT-ALHWACSAGHTEIVEFLL----Q-LGVPVNDKDDAGWSPLHIAA 81 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGG-GCCCTTSCC-HHHHHHHHTCHHHHHHHH----H-TTCCSCCCCTTSCCHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhh-hcCCCCCCC-HHHHHHHcCcHHHHHHHH----H-hCCCCCCcCCCCCCHHHHHH
Confidence 4666778899998888887643321 122222222 223334455554444333 3 344433221 122334445
Q ss_pred HcCCHHHHHHHHHH
Q 036775 90 KCGDVGIAIQVFNM 103 (293)
Q Consensus 90 ~~~~~~~A~~~~~~ 103 (293)
..|+.+-+..+++.
T Consensus 82 ~~~~~~~v~~Ll~~ 95 (231)
T 3aji_A 82 SAGXDEIVKALLVK 95 (231)
T ss_dssp HHTCHHHHHHHHHT
T ss_pred HcCHHHHHHHHHHc
Confidence 55666655555543
No 353
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=34.30 E-value=1.2e+02 Score=22.10 Aligned_cols=90 Identities=7% Similarity=-0.042 Sum_probs=46.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCchH-------HHHHHHHHHhc--ccCcchHHHHHHHHHHhhcC-CC------
Q 036775 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNE-------ATLVNVLSACS--SISALSFGQYVHSYISTRYD-LS------ 75 (293)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-------~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~-~~------ 75 (293)
.+...+..|+.+.+..+++.+...| ..++. .-...+..++. ..|+.+-+..+++.-.. .. ..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g-~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~-~~~~~~~~~~~ 82 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNS-KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKD-SGNPKPLVNAQ 82 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHT-CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHH-TTCSSCGGGCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCc-ccchhhhcccc
Confidence 3455667788887777777766665 43332 22333333322 23777777777665443 11 11
Q ss_pred ---CchhHHHHHHHHHHHcCCHHHHHHHHHHh
Q 036775 76 ---VSNLVGNAVINMYVKCGDVGIAIQVFNML 104 (293)
Q Consensus 76 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 104 (293)
.+.. -.+.+...+..|+.+-+..+++.-
T Consensus 83 ~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g 113 (256)
T 2etb_A 83 CTDEFYQ-GHSALHIAIEKRSLQCVKLLVENG 113 (256)
T ss_dssp CCSTTTT-TCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred ccccccc-CCCHHHHHHHcCCHHHHHHHHHcC
Confidence 0011 123344455667776666666653
No 354
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=34.24 E-value=1e+02 Score=22.70 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=55.9
Q ss_pred hHHHHHHHHhCCCC----------chHhHHHHHHHHHHhcCC---------hhhchHHHHHHHhhc--CCchhhHHHHHH
Q 036775 196 LEEAEAFIREMPIE----------AEWSVWGALLNACRIHRN---------DEMFDPIRQELVNKK--GVSVGTFALMSN 254 (293)
Q Consensus 196 ~~~a~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~--~~~~~~~~~li~ 254 (293)
.+.|..++.+|+.. ....-|..+..+|.+.|- .+....+++...+.+ ..-|+.|.++|.
T Consensus 147 vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIID 226 (249)
T 3m0z_A 147 LETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIID 226 (249)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceecc
Confidence 57788888887311 234457777778877664 355666666666655 345678988888
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q 036775 255 TFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 255 ~~~~~g~~~~a~~~~~~m~~ 274 (293)
--...-+.++..++|..+++
T Consensus 227 k~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 227 KASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 87788899999999988765
No 355
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=34.17 E-value=61 Score=23.66 Aligned_cols=55 Identities=9% Similarity=-0.048 Sum_probs=29.7
Q ss_pred HHHhcccCcchHHHHHHHHHHhhcCCCCch-------hHHHHHHHHHHHc---CCHHHHHHHHHHhh
Q 036775 49 LSACSSISALSFGQYVHSYISTRYDLSVSN-------LVGNAVINMYVKC---GDVGIAIQVFNMLA 105 (293)
Q Consensus 49 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~---~~~~~A~~~~~~~~ 105 (293)
+...+..|+.+.+..+++.+.. .|..++. .-.+. +...+.. |+.+-+..+++.-.
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~-~g~~i~~~~~~~d~~g~t~-L~~A~~~~~~g~~~~v~~Ll~~g~ 70 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRW-NSKYLTDSAYTEGSTGKTC-LMKAVLNLQDGVNACIMPLLQIDK 70 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHH-HTCCTTSGGGSBTTTTBCH-HHHHHHTCBTTBCTTHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-cCCCcccccccCCCCCCCH-HHHHHHccccchHHHHHHHHhcCC
Confidence 3445566777777777776665 4554433 11223 3333444 66666666665443
No 356
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=34.01 E-value=57 Score=21.28 Aligned_cols=24 Identities=8% Similarity=0.021 Sum_probs=10.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 036775 12 MIGGYAERGFCEEAVSVFQEMEKT 35 (293)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~ 35 (293)
++..+...+..-.|.++++.+.+.
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~ 39 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRR 39 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHh
Confidence 333333333444444444444443
No 357
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=33.49 E-value=85 Score=21.63 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=13.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhC
Q 036775 82 NAVINMYVKCGDVGIAIQVFNMLAYK 107 (293)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 107 (293)
..++.-|...|+.++|...++++..|
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~~p 39 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLNLG 39 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 34455555555555555555555433
No 358
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=33.27 E-value=83 Score=22.48 Aligned_cols=22 Identities=5% Similarity=-0.065 Sum_probs=16.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH
Q 036775 253 SNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 253 i~~~~~~g~~~~a~~~~~~m~~ 274 (293)
+......|+...+.++.+.+++
T Consensus 214 l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 214 LQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4556677788888888877765
No 359
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=33.26 E-value=1.7e+02 Score=22.83 Aligned_cols=31 Identities=10% Similarity=-0.217 Sum_probs=22.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 036775 111 SWSTVISGLAMNGCGRQALQLFSLMIINGVF 141 (293)
Q Consensus 111 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 141 (293)
+...-+....+.+++..|-.+-+++.+.+..
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3455566777888888888888888877654
No 360
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=33.21 E-value=54 Score=27.94 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHHccCCCch-HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 8 SWTTMIGGYAER--GFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 8 ~y~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
-|..-|..+... .+.+.-....+++..+ ++.+ ..-.--++..|++.|-.+.|.++++.+-. ..-.+...+ ..
T Consensus 481 LW~vgI~yL~~~~~~~~~~gr~~IselLpr--~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~--k~l~~g~~g-eA 555 (570)
T 3f3f_C 481 LWPVAIGLIALSATGTRSAKKMVIAELLPH--YPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGN--QMLSAHNII-ES 555 (570)
T ss_dssp THHHHHHHHHHCSSSCHHHHHHHHHHHGGG--CCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------
T ss_pred chhHHHHHHhcCCccchhHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH--HHHHCccHH-HH
Confidence 355566666643 4456667777777665 3333 34567789999999999999999999876 333344444 67
Q ss_pred HHHHHHcCCHHHHH
Q 036775 85 INMYVKCGDVGIAI 98 (293)
Q Consensus 85 ~~~~~~~~~~~~A~ 98 (293)
+..|+++|+++...
T Consensus 556 L~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 556 IANFSRAGKYELVK 569 (570)
T ss_dssp --------------
T ss_pred HHHHHHcCChhhcc
Confidence 77899999887653
No 361
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=33.01 E-value=1.2e+02 Score=20.78 Aligned_cols=71 Identities=11% Similarity=0.040 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhc--CCCCchhHHHHHHHHHHHcCCH
Q 036775 22 CEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRY--DLSVSNLVGNAVINMYVKCGDV 94 (293)
Q Consensus 22 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 94 (293)
.+.+++-+.+..+..|.+++..= ..++..+...+..-.|.++++.+.+ . +...+..|.-.-++.+...|-+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~-~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQ-AEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHH-HCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 45555555554444336665432 3455566666677788888888877 4 4455555555566677776643
No 362
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=32.96 E-value=93 Score=20.33 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=11.6
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 036775 13 IGGYAERGFCEEAVSVFQE 31 (293)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~ 31 (293)
+...+..|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4445566777766666665
No 363
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=32.65 E-value=1.5e+02 Score=23.70 Aligned_cols=67 Identities=7% Similarity=0.045 Sum_probs=49.6
Q ss_pred HhHHHHHHHHHHhcCC--hhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 036775 212 WSVWGALLNACRIHRN--DEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLK 278 (293)
Q Consensus 212 ~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 278 (293)
..+|..++......++ .+++..+++.+..+..++...=..|+....+.-..+|-..+.+.|++.+.+
T Consensus 23 ~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~~~ 91 (377)
T 3r88_A 23 VPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHP 91 (377)
T ss_dssp -CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhCCc
Confidence 3467788887766665 467778888888887777777667777777777888888888888887644
No 364
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.50 E-value=75 Score=18.42 Aligned_cols=61 Identities=10% Similarity=0.050 Sum_probs=34.9
Q ss_pred HHHhCCCCCcHhHHHHHHHHHhcCC-ChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCCh
Q 036775 134 LMIINGVFPDDVTFIALISACSHGG-LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLL 196 (293)
Q Consensus 134 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 196 (293)
.+.+.|+.++..- ..++..+...+ ..-.+.++++.+.+ .+...+..|....+..+.+.|-+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~-~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLID-MGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHH-hCCCCCHhhHHHHHHHHHHCCCe
Confidence 4556676665543 34555555544 45667777777765 34344555555566666666543
No 365
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=31.33 E-value=1.2e+02 Score=20.36 Aligned_cols=79 Identities=5% Similarity=-0.046 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHhhcCCCC---chhHHHHHHHHHHHcCCHHHHHHHHHHhhh---CCcccHHHHHH--HHHh-cCCHHHH
Q 036775 58 LSFGQYVHSYISTRYDLSV---SNLVGNAVINMYVKCGDVGIAIQVFNMLAY---KDMISWSTVIS--GLAM-NGCGRQA 128 (293)
Q Consensus 58 ~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~--~~~~-~~~~~~a 128 (293)
++.+.++.....+..|..+ ++.++..++....+.|-++.. +.+..|.. ..+++|+.... .+.. .......
T Consensus 54 ~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~-~~w~~m~~~RN~tvH~Y~e~~a~~v~~~I~~~l~~f 132 (146)
T 1jog_A 54 YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM-SKWVAYRDMRNITSHTYDQEKAMAVYAQIDDFLIES 132 (146)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH-HHHHHHHHHHTTGGGTTSHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH-HHHHHHHHHhhHhcccccHhhHHHHHHHHHHHHHHH
Confidence 3455555555555456554 366667888888888877655 44544542 35556654332 2222 1144555
Q ss_pred HHHHHHHHh
Q 036775 129 LQLFSLMII 137 (293)
Q Consensus 129 ~~~~~~m~~ 137 (293)
..+.+.+.+
T Consensus 133 ~~l~~~l~~ 141 (146)
T 1jog_A 133 SFLLEQLRQ 141 (146)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 556565554
No 366
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=31.22 E-value=2e+02 Score=22.90 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEME 33 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~ 33 (293)
.-..+|.-|...|++++|...++++.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 45788999999999999999999984
No 367
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=31.08 E-value=1e+02 Score=20.37 Aligned_cols=44 Identities=18% Similarity=0.113 Sum_probs=19.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC
Q 036775 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158 (293)
Q Consensus 115 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 158 (293)
++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33444444444445555555554444444444444444444443
No 368
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.73 E-value=3.2e+02 Score=25.15 Aligned_cols=128 Identities=9% Similarity=-0.035 Sum_probs=76.4
Q ss_pred HHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCC
Q 036775 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGC 124 (293)
Q Consensus 48 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~ 124 (293)
++..|...+..+-+.++.. -.+.++..--.+..+|...|++++|..+|++.-.. +......
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~---------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV---------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGG----------
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccc----------
Confidence 5666777777776655432 34445555567888999999999999999987532 1111000
Q ss_pred HHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc----hhHHHHHHHHHHhcC
Q 036775 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----TQHYACVVDMYGRAG 194 (293)
Q Consensus 125 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g 194 (293)
.+....++..... ......-|..++..+-+.+.++.+.++-+...+... ..| ...|+.+.++.+..|
T Consensus 880 ~~~~~~ll~~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHHHTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCcccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 0111122221111 112334788888888888988888888877775211 112 236777777776655
No 369
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=30.43 E-value=2.1e+02 Score=22.89 Aligned_cols=84 Identities=12% Similarity=0.111 Sum_probs=39.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCchHH--HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchh--HHHHHHHH
Q 036775 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA--TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNL--VGNAVINM 87 (293)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~ 87 (293)
.+...+..|+.+-+..+++. | ..|+.. ...+.+...+..|+.+-+..+++. |..++.. .-.+.+..
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~----g-~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~~~g~t~L~~ 86 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQR----G-ASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-----KAKVNAKAKDDQTPLHC 86 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHT----T-CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-----TCCSSCCCTTSCCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHc----C-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-----CCCCCCCCCCCCCHHHH
Confidence 44455667777666555543 3 333321 111233344455666555544443 3322211 11233444
Q ss_pred HHHcCCHHHHHHHHHHhh
Q 036775 88 YVKCGDVGIAIQVFNMLA 105 (293)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~ 105 (293)
.+..|+.+-+.-+++.-.
T Consensus 87 A~~~g~~~~v~~Ll~~ga 104 (437)
T 1n11_A 87 AARIGHTNMVKLLLENNA 104 (437)
T ss_dssp HHHHTCHHHHHHHHHHTC
T ss_pred HHHCCCHHHHHHHHhCCC
Confidence 556677666666665433
No 370
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=29.60 E-value=83 Score=22.98 Aligned_cols=54 Identities=7% Similarity=-0.017 Sum_probs=28.6
Q ss_pred HHhcccCcchHHHHHHHHHHhhcCCCCchhH-------HHHHHHHHH--HcCCHHHHHHHHHHh
Q 036775 50 SACSSISALSFGQYVHSYISTRYDLSVSNLV-------GNAVINMYV--KCGDVGIAIQVFNML 104 (293)
Q Consensus 50 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~A~~~~~~~ 104 (293)
...++.|+.+....+++.+.+ .+..++... .+.|..+.. +.|+.+-+..+++..
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLT-HKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHH-HTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh-cCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 344566777777777776655 454444322 133333321 456666666665543
No 371
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=29.56 E-value=1e+02 Score=19.11 Aligned_cols=58 Identities=14% Similarity=0.148 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHh----hhhcCCCcchhHHHHH
Q 036775 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM----STVYEIVPQTQHYACV 186 (293)
Q Consensus 127 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~l 186 (293)
.|.++.++....|+.|+..+...++..|...+. + +.++.++. ....|..|+....+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 356666677777888887777777777665553 1 22222221 1234666666554443
No 372
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=29.11 E-value=97 Score=20.22 Aligned_cols=30 Identities=17% Similarity=0.125 Sum_probs=16.8
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEK 34 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~ 34 (293)
|+......+..+...++.+++..+++.+..
T Consensus 59 DV~~l~~yL~~lVeek~Lek~~~vlk~l~r 88 (124)
T 3vu7_H 59 DILQVVKYCTDLIEEKDLEKLDLVIKYMKR 88 (124)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 445555555555556666666666555533
No 373
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=28.82 E-value=1.6e+02 Score=20.89 Aligned_cols=18 Identities=6% Similarity=-0.060 Sum_probs=10.5
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 036775 13 IGGYAERGFCEEAVSVFQ 30 (293)
Q Consensus 13 i~~~~~~~~~~~a~~~~~ 30 (293)
+...++.|+.+.+..+++
T Consensus 7 L~~A~~~g~~~~v~~Ll~ 24 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLK 24 (232)
T ss_dssp HHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 444566677666655554
No 374
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.57 E-value=1.2e+02 Score=19.55 Aligned_cols=42 Identities=10% Similarity=-0.140 Sum_probs=23.6
Q ss_pred HHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775 131 LFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST 172 (293)
Q Consensus 131 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 172 (293)
+|+.+....+.|+...-..-+..+...++++.|.++...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555555544444444445566777777777666654
No 375
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=28.20 E-value=2.1e+02 Score=22.93 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=55.1
Q ss_pred HHHHhcccCcchHHHHHHHHHHhhcCCCCchhH--HHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhc
Q 036775 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLV--GNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMN 122 (293)
Q Consensus 48 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~ 122 (293)
.+...+..|+.+-+..+++ .|..++... ....+...+..|+.+-+.-+++.-... +....+. +...++.
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~-----~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~ 90 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQ-----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP-LHCAARI 90 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHH-----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH-HHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH-----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHC
Confidence 3444556677766655554 354444321 134456667788888887777754432 2222333 3344556
Q ss_pred CCHHHHHHHHHHHHhCCCCCcH---hHHHHHHHHHhcCCChhHHHHHHH
Q 036775 123 GCGRQALQLFSLMIINGVFPDD---VTFIALISACSHGGLVDQGLILFK 168 (293)
Q Consensus 123 ~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~ 168 (293)
|+.+-+.-+++ .|..|+. ...+. +...+..|+.+-+..+++
T Consensus 91 g~~~~v~~Ll~----~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 91 GHTNMVKLLLE----NNANPNLATTAGHTP-LHIAAREGHVETVLALLE 134 (437)
T ss_dssp TCHHHHHHHHH----HTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHh----CCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHh
Confidence 77654444443 3433322 11222 223344556555555444
No 376
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=28.03 E-value=84 Score=19.03 Aligned_cols=29 Identities=3% Similarity=-0.064 Sum_probs=14.4
Q ss_pred hhchHHHHHHHhhcCCchhhHHHHHHHHh
Q 036775 229 EMFDPIRQELVNKKGVSVGTFALMSNTFA 257 (293)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 257 (293)
+.|..++++++.....++..|...+..+.
T Consensus 11 ~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~ 39 (89)
T 1g1e_B 11 NHAINYVNKIKNRFQGQPDIYKAFLEILH 39 (89)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 34555555555555445555555444433
No 377
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=27.69 E-value=1.7e+02 Score=20.91 Aligned_cols=10 Identities=10% Similarity=0.265 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 036775 25 AVSVFQEMEK 34 (293)
Q Consensus 25 a~~~~~~m~~ 34 (293)
..++|+.+-.
T Consensus 53 l~~~F~~~D~ 62 (220)
T 3sjs_A 53 IYQWFMGVDR 62 (220)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHhCC
Confidence 3444444433
No 378
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=27.35 E-value=1.2e+02 Score=22.24 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=30.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCc-------hHHHHHHHHHHhc--ccCcchHHHHHHHHH
Q 036775 13 IGGYAERGFCEEAVSVFQEMEKTKEAEP-------NEATLVNVLSACS--SISALSFGQYVHSYI 68 (293)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 68 (293)
+...++.|+.+.+..+++.....+ ... +..-+..|..++. +.|+.+-+..+++.-
T Consensus 17 L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPFLQRSK-KRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHHHHHSC-CCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcc-cccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 334556788888888887765544 221 2233334444432 357777666666653
No 379
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=27.04 E-value=93 Score=22.00 Aligned_cols=20 Identities=0% Similarity=-0.119 Sum_probs=12.1
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 036775 13 IGGYAERGFCEEAVSVFQEM 32 (293)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m 32 (293)
+...++.|+.+.+..+++.-
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~ 25 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSK 25 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHhcC
Confidence 44455667777666666543
No 380
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=26.64 E-value=2.6e+02 Score=23.94 Aligned_cols=72 Identities=7% Similarity=0.022 Sum_probs=31.2
Q ss_pred CCChhHHHHHHHHhhhhcCCCcc-hhHHHHHHHHHHhcCChHHHHHHHHhCCCC--chHhHHHHHHHHHHhcCChhhc
Q 036775 157 GGLVDQGLILFKAMSTVYEIVPQ-TQHYACVVDMYGRAGLLEEAEAFIREMPIE--AEWSVWGALLNACRIHRNDEMF 231 (293)
Q Consensus 157 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a 231 (293)
..+.+...+...++.. .++.+ ..-...++..|.+.|-.+.|.++++.++.+ -+...+ .-+..|++.|+++.+
T Consensus 494 ~~~~~~gr~~IselLp--r~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 494 TGTRSAKKMVIAELLP--HYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SSCHHHHHHHHHHHGG--GCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred ccchhHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHHHHHHcCChhhc
Confidence 3445556666666665 22332 234566777788888888888888777322 223333 444556677766654
No 381
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=26.61 E-value=1.6e+02 Score=20.27 Aligned_cols=51 Identities=14% Similarity=-0.068 Sum_probs=30.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCC--cHhHHHHHHH-H-----HhcCCChhHHHHHHHHhhh
Q 036775 122 NGCGRQALQLFSLMIINGVFP--DDVTFIALIS-A-----CSHGGLVDQGLILFKAMST 172 (293)
Q Consensus 122 ~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~ 172 (293)
.|++-+|-++++..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 377777777777665544444 4445555555 2 2356777777777776654
No 382
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=26.47 E-value=48 Score=21.57 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=19.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchH
Q 036775 13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60 (293)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 60 (293)
|...+.+++.+-|.++++.....| +...|.+++-.|-..=+++-
T Consensus 39 ietAa~S~d~elaEeLL~yFVe~g----~kEcF~A~LytCYdLlrpDv 82 (125)
T 3qil_A 39 MQYASESKDTELAEELLQWFLQEE----KRECFGACLFTCYDLLRPDV 82 (125)
T ss_dssp HHTTTSSCCSHHHHHHHHHHTTSC----SHHHHHHHHHHHTTCSCTTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC----chHHHHHHHHHHHhccChHH
Confidence 333444455555555555544332 33344444444444333333
No 383
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=25.39 E-value=67 Score=20.41 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=9.0
Q ss_pred HHcCCHHHHHHHHHHhh
Q 036775 89 VKCGDVGIAIQVFNMLA 105 (293)
Q Consensus 89 ~~~~~~~~A~~~~~~~~ 105 (293)
++.|++++|.+.+++..
T Consensus 33 Ak~gdfe~A~~~l~eA~ 49 (109)
T 3k1s_A 33 AKQGKMAEADEAMVKAK 49 (109)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34555555555555443
No 384
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=24.87 E-value=1.1e+02 Score=22.77 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=54.9
Q ss_pred hHHHHHHHHhCCC----------CchHhHHHHHHHHHHhcCC---------hhhchHHHHHHHhhc--CCchhhHHHHHH
Q 036775 196 LEEAEAFIREMPI----------EAEWSVWGALLNACRIHRN---------DEMFDPIRQELVNKK--GVSVGTFALMSN 254 (293)
Q Consensus 196 ~~~a~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~--~~~~~~~~~li~ 254 (293)
.+.|..++.+|+. .....-|..+..+|.+.|- .+....+++...+.+ ..-|..|.++|.
T Consensus 170 vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSIID 249 (275)
T 3m6y_A 170 IKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIID 249 (275)
T ss_dssp HHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceecc
Confidence 5677777777731 1234457777777777654 355666666666655 334678888888
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q 036775 255 TFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 255 ~~~~~g~~~~a~~~~~~m~~ 274 (293)
--...-+.++..+++..+++
T Consensus 250 k~TG~TrpedV~~ll~~~K~ 269 (275)
T 3m6y_A 250 KETGNTKVEAVRELLAVVKK 269 (275)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 77778889999999988765
No 385
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=23.90 E-value=2.7e+02 Score=22.09 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhC
Q 036775 82 NAVINMYVKCGDVGIAIQVFNMLAYK 107 (293)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 107 (293)
..++.-|...++.++|...++++..|
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p 83 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLG 83 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCc
Confidence 56677777777888888877777654
No 386
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=23.85 E-value=1.4e+02 Score=21.05 Aligned_cols=15 Identities=0% Similarity=-0.108 Sum_probs=6.7
Q ss_pred HHcCCHHHHHHHHHH
Q 036775 89 VKCGDVGIAIQVFNM 103 (293)
Q Consensus 89 ~~~~~~~~A~~~~~~ 103 (293)
++.|+.+....+++.
T Consensus 10 ~~~g~~~~v~~Ll~~ 24 (228)
T 2dzn_A 10 CMENEFFKVQELLHS 24 (228)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhc
Confidence 344444444444443
No 387
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=23.15 E-value=2.4e+02 Score=21.04 Aligned_cols=205 Identities=12% Similarity=0.037 Sum_probs=98.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH--HHHHHHHHHH
Q 036775 13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV--GNAVINMYVK 90 (293)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 90 (293)
+...+..|+.+-+..+++. | ..++...-.+.+...+..|+.+-+..+++ .|..++... -.+.+...+.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~----g-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-----~ga~~~~~d~~g~t~L~~A~~ 104 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA----G-ALKNLLENEFPLHQAATLEDTKIVKILLF-----SGLDDSQFDDKGNTALYYAVD 104 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT----T-GGGSCCTTCCHHHHHTTSSSCHHHHHHHH-----TTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhC----C-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-----CCCCCCCcCCCCCcHHHHHHH
Confidence 3445567777666555543 3 33332212234455566677766555554 354443221 1234455667
Q ss_pred cCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHh-HHHHHHHHHhcCCChhHHHHH
Q 036775 91 CGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDV-TFIALISACSHGGLVDQGLIL 166 (293)
Q Consensus 91 ~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~ 166 (293)
.|+.+-+.-+++.-..+ +...+.+.+...+..|+.+-+. .+.+.|..+... .-.+.+...+..|+.+-+..+
T Consensus 105 ~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~L 180 (285)
T 3kea_A 105 SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS----YFLSEIPSTFDLAILLSCIHITIKNGHVDMMILL 180 (285)
T ss_dssp TTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHH----HHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCccccccCCccHHHHHHHcChHHHHHHH
Confidence 78888777777764433 3334344555556677765444 444445433221 223344455567777766666
Q ss_pred HHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHH
Q 036775 167 FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (293)
++.-.. -.. .+..-.+..+..-+..|+.+-+.-++ +.+..++.... .-...|+.+.+..+++.-.
T Consensus 181 l~~gad-~n~-~~~~g~t~~L~~A~~~~~~~~v~~Ll-~~gad~~~~~~-----~a~~~~~~~iv~~Ll~~g~ 245 (285)
T 3kea_A 181 LDYMTS-TNT-NNSLLFIPDIKLAIDNKDIEMLQALF-KYDINIYSANL-----ENVLLDDAEIAKMIIEKHV 245 (285)
T ss_dssp HHHHHH-TCT-TCCCBCCTTHHHHHHHTCHHHHHHHT-TSCBCSTTTTG-----GGGTTTCHHHHHHHHHHHH
T ss_pred HHcCCC-CCc-ccCCCCChHHHHHHHcCCHHHHHHHH-HcCCCCCCCCh-----hhhhcCCHHHHHHHHHcCC
Confidence 654332 111 11111122223334456655444444 44444443321 1133555555555554443
No 388
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae}
Probab=21.68 E-value=2.9e+02 Score=23.40 Aligned_cols=53 Identities=15% Similarity=0.210 Sum_probs=32.1
Q ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHc---cCCCchHHHHHHHHHHhcc
Q 036775 2 PKRDVVSWTTMIGGYAERGFCEEAVSV-------FQEMEKT---KEAEPNEATLVNVLSACSS 54 (293)
Q Consensus 2 p~p~~~~y~~li~~~~~~~~~~~a~~~-------~~~m~~~---~~~~p~~~~~~~ll~~~~~ 54 (293)
|.|....|...+...+..|++.+.+.. |.++-+. ....+....|...|..|..
T Consensus 437 ~~p~~~aYt~~l~~~a~~g~~~~~~aAl~pC~~~Y~~ig~~l~~~~~~~~~~~Y~~WI~~Y~~ 499 (550)
T 3rm5_A 437 RGPALRAYSRYFNDVSRRGNWQELVASLTPCLMGYGEALTKMKGKVTAPEGSVYHEWCETYAS 499 (550)
T ss_dssp CCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTTTCCCSCTTSHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHhCC
Confidence 457888899999888888888775432 2222211 0011223467777877774
No 389
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=21.68 E-value=81 Score=22.39 Aligned_cols=26 Identities=4% Similarity=0.032 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 249 FALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 249 ~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
.-.+|.++.+.|++++|.++.+++..
T Consensus 35 kLqvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 35 KLQLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34568888888888888888877643
No 390
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=21.23 E-value=2.2e+02 Score=20.07 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=10.8
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 036775 254 NTFAGADRWEDANKIRDEIRRMGLKKK 280 (293)
Q Consensus 254 ~~~~~~g~~~~a~~~~~~m~~~~~~p~ 280 (293)
...++.|+.+-+ +.+.+.|..++
T Consensus 182 ~~A~~~~~~~~v----~~Ll~~gad~~ 204 (237)
T 3b7b_A 182 HIAARENRYDCV----VLFLSRDSDVT 204 (237)
T ss_dssp HHHHHTTCHHHH----HHHHTTTCCTT
T ss_pred HHHHHhCCHhHH----HHHHHcCCCCC
Confidence 334445555433 33445565554
No 391
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.49 E-value=2.9e+02 Score=22.87 Aligned_cols=26 Identities=4% Similarity=0.013 Sum_probs=15.0
Q ss_pred HHHHHHHhcccCcchHHHHHHHHHHh
Q 036775 45 LVNVLSACSSISALSFGQYVHSYIST 70 (293)
Q Consensus 45 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 70 (293)
.+.+++.|.+.++...+..+++.+..
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~ 204 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQP 204 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 34455556666666666666665555
No 392
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.18 E-value=2.5e+02 Score=20.19 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=41.2
Q ss_pred HHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC-----hhHHHHHHHHhhhhcCCC
Q 036775 113 STVISGL---AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL-----VDQGLILFKAMSTVYEIV 177 (293)
Q Consensus 113 ~~li~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 177 (293)
--+|+++ .|..+++.|+-.+-+|.+.| .|.-..-..++-+.-.-|. +..|...++.... .|.+
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~-iG~P 85 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEK-LGLP 85 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHH-HCTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-hCCC
Confidence 3345554 45689999999999999999 7666666666666665554 3345555555554 4543
No 393
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=20.13 E-value=4.7e+02 Score=25.34 Aligned_cols=79 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHh---------------cCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCC
Q 036775 113 STVISGLAM---------------NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177 (293)
Q Consensus 113 ~~li~~~~~---------------~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 177 (293)
+.|+.++++ ....++..+.|.++.+---.-|.......+.-....+++-.|.+++.++.++ +
T Consensus 1238 ~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~---k 1314 (1354)
T 3lxu_X 1238 NTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE---K 1314 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---T
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc---c
Q ss_pred cchhHHHHHHHHHHhcC
Q 036775 178 PQTQHYACVVDMYGRAG 194 (293)
Q Consensus 178 ~~~~~~~~l~~~~~~~g 194 (293)
|+...|..++..+...|
T Consensus 1315 ~~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1315 RTRDHFVELAAINGALG 1331 (1354)
T ss_dssp CCHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHcC
No 394
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=20.11 E-value=3e+02 Score=21.06 Aligned_cols=40 Identities=10% Similarity=0.031 Sum_probs=26.3
Q ss_pred HHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 166 LFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
+++.+.+ .|+.|...++..++..+.+.=.++.+.++|+.+
T Consensus 176 L~~hL~~-~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~ 215 (310)
T 3hzj_A 176 LHSHFSD-LNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLL 215 (310)
T ss_dssp HHHHHHH-HTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHH-cCCChHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 4445544 566777767777776666666677777777766
Done!