BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036777
         (66 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
 pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
 pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
          Cysteine Substrate Bound
 pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
          Cysteine Substrate Bound
 pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary
          Complex With Trnacys
          Length = 461

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 38/49 (77%)

Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYIL 64
          L I+N++T+QKE F PI  G+VGMYVCG+T YDL H+GH R  ++F ++
Sbjct: 2  LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVV 50


>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From
          Coxiella Burnetii
          Length = 462

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/44 (59%), Positives = 33/44 (75%)

Query: 18 IYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF 61
          I+NS+T+QKE+F PI  GKV +YVCG T YD  H+GH R+ I F
Sbjct: 7  IFNSLTKQKEIFKPIESGKVKLYVCGXTVYDYXHIGHGRSWIIF 50


>pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
          Enzyme In The Mycothiol Biosynthetic Pathway
 pdb|3C8Z|B Chain B, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
          Enzyme In The Mycothiol Biosynthetic Pathway
          Length = 414

 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 31 PIVPGKVG-MYVCGVTAYDLSHLGHARAAISFYILY 65
          P+ PG    MYVCG+T YD +HLGHA   ++F +++
Sbjct: 33 PVTPGPTATMYVCGITPYDATHLGHAATYLTFDLVH 68


>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss)
          From Borrelia Burgdorferi
 pdb|3SP1|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss)
          From Borrelia Burgdorferi
          Length = 501

 Score = 31.6 bits (70), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 1  METSKETTAAAPKMDLIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAI 59
          M T +  T     M L +YN+ T+     T     KV  Y CG T Y+ +H+G+ R  I
Sbjct: 9  MGTLEAQTQGPGSMILKLYNTRTKDFSELTNFENVKV--YACGPTVYNYAHIGNFRTYI 65


>pdb|1OI7|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase Alpha
          Subunit From Thermus Thermophilus
          Length = 288

 Score = 25.4 bits (54), Expect = 9.0,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 22 MTQQKELFTPIVPGKVGMYVCGVTAYD 48
          +T   ++   + PGK GM V GV  YD
Sbjct: 28 LTYGTKIVAGVTPGKGGMEVLGVPVYD 54


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.132    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,704,220
Number of Sequences: 62578
Number of extensions: 48590
Number of successful extensions: 97
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92
Number of HSP's gapped (non-prelim): 5
length of query: 66
length of database: 14,973,337
effective HSP length: 37
effective length of query: 29
effective length of database: 12,657,951
effective search space: 367080579
effective search space used: 367080579
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)