BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036777
(66 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1VDQ5|SYC_DESVV Cysteine--tRNA ligase OS=Desulfovibrio vulgaris subsp. vulgaris
(strain DP4) GN=cysS PE=3 SV=1
Length = 485
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/47 (70%), Positives = 42/47 (89%)
Query: 18 IYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYIL 64
IYNS++++KELFTP VPGKV MYVCG+TAYDL H+GHAR+A+ F +L
Sbjct: 3 IYNSLSRRKELFTPAVPGKVNMYVCGITAYDLCHIGHARSAVVFDVL 49
>sp|Q72BQ5|SYC_DESVH Cysteine--tRNA ligase OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=cysS PE=3
SV=1
Length = 485
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/47 (70%), Positives = 42/47 (89%)
Query: 18 IYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYIL 64
IYNS++++KELFTP VPGKV MYVCG+TAYDL H+GHAR+A+ F +L
Sbjct: 3 IYNSLSRRKELFTPAVPGKVNMYVCGITAYDLCHIGHARSAVVFDVL 49
>sp|Q3A8C9|SYC_PELCD Cysteine--tRNA ligase OS=Pelobacter carbinolicus (strain DSM 2380
/ Gra Bd 1) GN=cysS PE=3 SV=1
Length = 481
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/52 (63%), Positives = 40/52 (76%)
Query: 14 MDLIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYILY 65
M L +YN+MT +KE F P+ PGKVGMYVCGVT YD H+GHARA + F I+Y
Sbjct: 1 MSLRVYNTMTGRKEEFEPLQPGKVGMYVCGVTVYDYCHIGHARANVVFDIIY 52
>sp|Q6LT67|SYC1_PHOPR Cysteine--tRNA ligase 1 OS=Photobacterium profundum GN=cysS1 PE=3
SV=1
Length = 464
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/56 (62%), Positives = 41/56 (73%), Gaps = 5/56 (8%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF-----YILYS 66
L IYNS+T+QKE F PI PGK+GMYVCGVT YDL H+GH R +SF Y+ YS
Sbjct: 2 LKIYNSLTKQKEEFKPIQPGKIGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYS 57
>sp|Q0HTK4|SYC_SHESR Cysteine--tRNA ligase OS=Shewanella sp. (strain MR-7) GN=cysS
PE=3 SV=1
Length = 461
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 32/46 (69%), Positives = 37/46 (80%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF 61
L IYNS+T+QK+ F PI PGKVGMYVCGVT YDL H+GH R +SF
Sbjct: 4 LKIYNSITRQKQEFKPITPGKVGMYVCGVTVYDLCHIGHGRTFVSF 49
>sp|Q0HH98|SYC_SHESM Cysteine--tRNA ligase OS=Shewanella sp. (strain MR-4) GN=cysS
PE=3 SV=1
Length = 461
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 32/46 (69%), Positives = 37/46 (80%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF 61
L IYNS+T+QK+ F PI PGKVGMYVCGVT YDL H+GH R +SF
Sbjct: 4 LKIYNSITRQKQEFKPITPGKVGMYVCGVTVYDLCHIGHGRTFVSF 49
>sp|A0KYM2|SYC_SHESA Cysteine--tRNA ligase OS=Shewanella sp. (strain ANA-3) GN=cysS
PE=3 SV=1
Length = 461
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 32/46 (69%), Positives = 37/46 (80%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF 61
L IYNS+T+QK+ F PI PGKVGMYVCGVT YDL H+GH R +SF
Sbjct: 4 LKIYNSITRQKQEFKPITPGKVGMYVCGVTVYDLCHIGHGRTFVSF 49
>sp|C3LNF1|SYC_VIBCM Cysteine--tRNA ligase OS=Vibrio cholerae serotype O1 (strain
M66-2) GN=cysS PE=3 SV=1
Length = 459
Score = 76.3 bits (186), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/49 (67%), Positives = 39/49 (79%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYIL 64
L IYNS+T+QKE F PIV GKVGMYVCGVT YDL H+GH R +SF ++
Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVV 50
>sp|Q9KQZ9|SYC_VIBCH Cysteine--tRNA ligase OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=cysS PE=3 SV=1
Length = 459
Score = 76.3 bits (186), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/49 (67%), Positives = 39/49 (79%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYIL 64
L IYNS+T+QKE F PIV GKVGMYVCGVT YDL H+GH R +SF ++
Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVV 50
>sp|A5F763|SYC_VIBC3 Cysteine--tRNA ligase OS=Vibrio cholerae serotype O1 (strain ATCC
39541 / Ogawa 395 / O395) GN=cysS PE=3 SV=1
Length = 459
Score = 76.3 bits (186), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/49 (67%), Positives = 39/49 (79%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYIL 64
L IYNS+T+QKE F PIV GKVGMYVCGVT YDL H+GH R +SF ++
Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVV 50
>sp|A8H617|SYC_SHEPA Cysteine--tRNA ligase OS=Shewanella pealeana (strain ATCC 700345
/ ANG-SQ1) GN=cysS PE=3 SV=1
Length = 459
Score = 76.3 bits (186), Expect = 6e-14, Method: Composition-based stats.
Identities = 34/56 (60%), Positives = 41/56 (73%), Gaps = 5/56 (8%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF-----YILYS 66
L +YNS+T+QKE F P+ PGKVGMYVCGVT YDL H+GH R +SF Y+ YS
Sbjct: 2 LKLYNSLTRQKEQFVPLQPGKVGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYS 57
>sp|B0TLV2|SYC_SHEHH Cysteine--tRNA ligase OS=Shewanella halifaxensis (strain HAW-EB4)
GN=cysS PE=3 SV=1
Length = 459
Score = 76.3 bits (186), Expect = 6e-14, Method: Composition-based stats.
Identities = 34/56 (60%), Positives = 41/56 (73%), Gaps = 5/56 (8%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF-----YILYS 66
L +YNS+T+QKE F P+ PGKVGMYVCGVT YDL H+GH R +SF Y+ YS
Sbjct: 2 LKLYNSLTRQKEQFVPLQPGKVGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYS 57
>sp|A0LIR9|SYC_SYNFM Cysteine--tRNA ligase OS=Syntrophobacter fumaroxidans (strain DSM
10017 / MPOB) GN=cysS PE=3 SV=1
Length = 493
Score = 75.9 bits (185), Expect = 6e-14, Method: Composition-based stats.
Identities = 32/52 (61%), Positives = 41/52 (78%)
Query: 14 MDLIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYILY 65
M L +YN++T+ KE F P+ PGKV YVCGVT YDLSH+GHAR+AI F ++Y
Sbjct: 1 MVLHVYNTLTKSKEEFIPLEPGKVKFYVCGVTVYDLSHIGHARSAIVFDVIY 52
>sp|B8DKL0|SYC_DESVM Cysteine--tRNA ligase OS=Desulfovibrio vulgaris (strain Miyazaki
F / DSM 19637) GN=cysS PE=3 SV=1
Length = 485
Score = 75.9 bits (185), Expect = 7e-14, Method: Composition-based stats.
Identities = 30/47 (63%), Positives = 40/47 (85%)
Query: 18 IYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYIL 64
+YN++T++KE F P VPGKV MYVCG+TAYDL H+GHAR+A+ F +L
Sbjct: 3 LYNTLTRKKEHFEPAVPGKVNMYVCGITAYDLCHIGHARSAVVFDVL 49
>sp|A9KWH4|SYC_SHEB9 Cysteine--tRNA ligase OS=Shewanella baltica (strain OS195)
GN=cysS PE=3 SV=1
Length = 459
Score = 75.9 bits (185), Expect = 8e-14, Method: Composition-based stats.
Identities = 31/46 (67%), Positives = 37/46 (80%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF 61
L IYNS+T+QK+ F PI PGK+GMYVCGVT YDL H+GH R +SF
Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSF 47
>sp|A6WLP8|SYC_SHEB8 Cysteine--tRNA ligase OS=Shewanella baltica (strain OS185)
GN=cysS PE=3 SV=1
Length = 459
Score = 75.9 bits (185), Expect = 8e-14, Method: Composition-based stats.
Identities = 31/46 (67%), Positives = 37/46 (80%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF 61
L IYNS+T+QK+ F PI PGK+GMYVCGVT YDL H+GH R +SF
Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSF 47
>sp|A3D302|SYC_SHEB5 Cysteine--tRNA ligase OS=Shewanella baltica (strain OS155 / ATCC
BAA-1091) GN=cysS PE=3 SV=1
Length = 459
Score = 75.9 bits (185), Expect = 8e-14, Method: Composition-based stats.
Identities = 31/46 (67%), Positives = 37/46 (80%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF 61
L IYNS+T+QK+ F PI PGK+GMYVCGVT YDL H+GH R +SF
Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSF 47
>sp|B8E5F2|SYC_SHEB2 Cysteine--tRNA ligase OS=Shewanella baltica (strain OS223)
GN=cysS PE=3 SV=1
Length = 459
Score = 75.9 bits (185), Expect = 8e-14, Method: Composition-based stats.
Identities = 31/46 (67%), Positives = 37/46 (80%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF 61
L IYNS+T+QK+ F PI PGK+GMYVCGVT YDL H+GH R +SF
Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSF 47
>sp|B8CRG0|SYC_SHEPW Cysteine--tRNA ligase OS=Shewanella piezotolerans (strain WP3 /
JCM 13877) GN=cysS PE=3 SV=1
Length = 459
Score = 75.5 bits (184), Expect = 8e-14, Method: Composition-based stats.
Identities = 33/56 (58%), Positives = 41/56 (73%), Gaps = 5/56 (8%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF-----YILYS 66
L +YN++T+QKE F PI PGK+GMYVCGVT YDL H+GH R +SF Y+ YS
Sbjct: 2 LKLYNTLTRQKEQFVPIQPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYS 57
>sp|Q8EG22|SYC_SHEON Cysteine--tRNA ligase OS=Shewanella oneidensis (strain MR-1)
GN=cysS PE=3 SV=1
Length = 459
Score = 75.5 bits (184), Expect = 9e-14, Method: Composition-based stats.
Identities = 32/46 (69%), Positives = 37/46 (80%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF 61
L IYNS+T+QK+ F PI PGKVGMYVCGVT YDL H+GH R +SF
Sbjct: 2 LKIYNSITRQKQEFKPINPGKVGMYVCGVTVYDLCHIGHGRTFVSF 47
>sp|A8FTH6|SYC_SHESH Cysteine--tRNA ligase OS=Shewanella sediminis (strain HAW-EB3)
GN=cysS PE=3 SV=1
Length = 459
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/56 (58%), Positives = 41/56 (73%), Gaps = 5/56 (8%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF-----YILYS 66
L +YNS+T+QKE F P+ PGKVGMYVCG+T YDL H+GH R +SF Y+ YS
Sbjct: 2 LKLYNSLTRQKEEFKPLQPGKVGMYVCGITIYDLCHIGHGRTFVSFDMIVRYLRYS 57
>sp|C6E7P0|SYC_GEOSM Cysteine--tRNA ligase OS=Geobacter sp. (strain M21) GN=cysS PE=3
SV=1
Length = 480
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/52 (61%), Positives = 39/52 (75%)
Query: 14 MDLIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYILY 65
M L +YN++T KE F PI PGKVGMYVCGVT YD H+GHARA + F ++Y
Sbjct: 1 MPLRVYNTLTGSKEEFVPINPGKVGMYVCGVTVYDHCHIGHARANVVFDMIY 52
>sp|B5EEK6|SYC_GEOBB Cysteine--tRNA ligase OS=Geobacter bemidjiensis (strain Bem /
ATCC BAA-1014 / DSM 16622) GN=cysS PE=3 SV=1
Length = 480
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/52 (61%), Positives = 39/52 (75%)
Query: 14 MDLIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYILY 65
M L +YN++T KE F PI PGKVGMYVCGVT YD H+GHARA + F ++Y
Sbjct: 1 MPLRVYNTLTGSKEEFVPINPGKVGMYVCGVTVYDHCHIGHARANVVFDMIY 52
>sp|A3QFX9|SYC_SHELP Cysteine--tRNA ligase OS=Shewanella loihica (strain ATCC BAA-1088
/ PV-4) GN=cysS PE=3 SV=1
Length = 459
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/46 (67%), Positives = 37/46 (80%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF 61
L +YNS+T+QKE F PI PGKVGMYVCGVT YDL H+GH R ++F
Sbjct: 2 LKLYNSLTRQKEEFKPIQPGKVGMYVCGVTIYDLCHIGHGRTFVAF 47
>sp|Q5E4F1|SYC_VIBF1 Cysteine--tRNA ligase OS=Vibrio fischeri (strain ATCC 700601 /
ES114) GN=cysS PE=3 SV=1
Length = 461
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/49 (65%), Positives = 38/49 (77%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYIL 64
L IYNS+T+QKE F PI GKVGMYVCGVT YDL H+GH R +SF ++
Sbjct: 2 LKIYNSLTRQKEEFKPITEGKVGMYVCGVTIYDLCHIGHGRTFVSFDVI 50
>sp|B6EH43|SYC_ALISL Cysteine--tRNA ligase OS=Aliivibrio salmonicida (strain LFI1238)
GN=cysS PE=3 SV=1
Length = 462
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/49 (65%), Positives = 38/49 (77%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYIL 64
L IYNS+T+QKE F PI GKVGMYVCGVT YDL H+GH R +SF ++
Sbjct: 2 LKIYNSLTRQKEEFKPITEGKVGMYVCGVTIYDLCHIGHGRTFVSFDVI 50
>sp|A1RL92|SYC_SHESW Cysteine--tRNA ligase OS=Shewanella sp. (strain W3-18-1) GN=cysS
PE=3 SV=1
Length = 461
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/46 (67%), Positives = 37/46 (80%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF 61
L IYNS+T+QK+ F PI PGK+GMYVCGVT YDL H+GH R +SF
Sbjct: 4 LKIYNSITRQKQEFKPINPGKIGMYVCGVTIYDLCHIGHGRTFVSF 49
>sp|A4Y5H9|SYC_SHEPC Cysteine--tRNA ligase OS=Shewanella putrefaciens (strain CN-32 /
ATCC BAA-453) GN=cysS PE=3 SV=1
Length = 461
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/46 (67%), Positives = 37/46 (80%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF 61
L IYNS+T+QK+ F PI PGK+GMYVCGVT YDL H+GH R +SF
Sbjct: 4 LKIYNSITRQKQEFKPINPGKIGMYVCGVTIYDLCHIGHGRTFVSF 49
>sp|C4LG04|SYC_TOLAT Cysteine--tRNA ligase OS=Tolumonas auensis (strain DSM 9187 /
TA4) GN=cysS PE=3 SV=1
Length = 463
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/49 (63%), Positives = 39/49 (79%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYIL 64
L IYN++T+QKE F PI PGKVGMYVCGVT YDL H+GH R ++F ++
Sbjct: 2 LKIYNTLTRQKEEFKPIHPGKVGMYVCGVTIYDLCHIGHGRTFVAFDVV 50
>sp|Q12L98|SYC_SHEDO Cysteine--tRNA ligase OS=Shewanella denitrificans (strain OS217 /
ATCC BAA-1090 / DSM 15013) GN=cysS PE=3 SV=1
Length = 459
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 37/46 (80%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF 61
L IYNSM+++K+ F PI PGK+GMYVCG+T YDL H+GH R +SF
Sbjct: 2 LKIYNSMSREKQEFKPITPGKIGMYVCGITIYDLCHIGHGRTFVSF 47
>sp|Q7NX82|SYC_CHRVO Cysteine--tRNA ligase OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131
/ NCTC 9757) GN=cysS PE=3 SV=2
Length = 457
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/50 (60%), Positives = 39/50 (78%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYILY 65
L +YN++T+QKE F PI PGKV MYVCG+T YDL H+GHAR +F ++Y
Sbjct: 2 LSLYNTLTRQKEAFKPIEPGKVSMYVCGMTVYDLCHIGHARMLAAFDVIY 51
>sp|B8J0S2|SYC_DESDA Cysteine--tRNA ligase OS=Desulfovibrio desulfuricans (strain ATCC
27774 / DSM 6949) GN=cysS PE=3 SV=1
Length = 483
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/49 (59%), Positives = 41/49 (83%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYIL 64
+++YN++ +QKE FTP+ PGKV MYVCG+TAYD H+GHAR+A+ F +L
Sbjct: 1 MLLYNTLGRQKEEFTPLRPGKVHMYVCGITAYDYCHIGHARSALVFDVL 49
>sp|Q39ZL8|SYC_GEOMG Cysteine--tRNA ligase OS=Geobacter metallireducens (strain GS-15
/ ATCC 53774 / DSM 7210) GN=cysS PE=3 SV=1
Length = 485
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 40/52 (76%)
Query: 14 MDLIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYILY 65
M L +YN+++ KE FTP+VPG+V MYVCGVT YD H+GHARA + F ++Y
Sbjct: 1 MSLRVYNTLSGTKEEFTPLVPGRVSMYVCGVTVYDHCHIGHARANVVFDMIY 52
>sp|B1KLU0|SYC_SHEWM Cysteine--tRNA ligase OS=Shewanella woodyi (strain ATCC 51908 /
MS32) GN=cysS PE=3 SV=1
Length = 459
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/56 (57%), Positives = 41/56 (73%), Gaps = 5/56 (8%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF-----YILYS 66
L +YNS+T+QKE F P+ PGKVGMYVCG+T YDL H+GH R ++F Y+ YS
Sbjct: 2 LKLYNSLTRQKEEFKPLQPGKVGMYVCGITIYDLCHIGHGRTFVAFDMIVRYLRYS 57
>sp|A1AK01|SYC_PELPD Cysteine--tRNA ligase OS=Pelobacter propionicus (strain DSM 2379)
GN=cysS PE=3 SV=1
Length = 493
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 39/52 (75%)
Query: 14 MDLIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYILY 65
M L IYN++T +K+ F P+ PGK GMYVCGVT YD H+GHARA + F ++Y
Sbjct: 1 MALRIYNTLTGEKDTFVPLHPGKAGMYVCGVTVYDYCHIGHARANVVFDVIY 52
>sp|Q7MLR5|SYC_VIBVY Cysteine--tRNA ligase OS=Vibrio vulnificus (strain YJ016) GN=cysS
PE=3 SV=2
Length = 460
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/49 (63%), Positives = 38/49 (77%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYIL 64
L IYN++T+QKE F PI GKVGMYVCGVT YDL H+GH R +SF ++
Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVV 50
>sp|Q8D8R1|SYC_VIBVU Cysteine--tRNA ligase OS=Vibrio vulnificus (strain CMCP6) GN=cysS
PE=3 SV=2
Length = 460
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/49 (63%), Positives = 38/49 (77%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYIL 64
L IYN++T+QKE F PI GKVGMYVCGVT YDL H+GH R +SF ++
Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVV 50
>sp|B7VGZ1|SYC_VIBSL Cysteine--tRNA ligase OS=Vibrio splendidus (strain LGP32) GN=cysS
PE=3 SV=1
Length = 461
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/49 (63%), Positives = 38/49 (77%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYIL 64
L IYN++T+QKE F PI GKVGMYVCGVT YDL H+GH R +SF ++
Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVV 50
>sp|Q87QJ9|SYC_VIBPA Cysteine--tRNA ligase OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=cysS PE=3 SV=1
Length = 460
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/49 (63%), Positives = 38/49 (77%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYIL 64
L IYN++T+QKE F PI GKVGMYVCGVT YDL H+GH R +SF ++
Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVV 50
>sp|Q2W7Y5|SYC_MAGSA Cysteine--tRNA ligase OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=cysS PE=3 SV=1
Length = 459
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/52 (55%), Positives = 41/52 (78%)
Query: 14 MDLIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYILY 65
M L++YN++T+ K++F P+VPG VGMYVCG T YD +H+G+AR I F +LY
Sbjct: 1 MPLVLYNTLTRTKDVFEPLVPGHVGMYVCGPTVYDRAHIGNARPVIVFDVLY 52
>sp|A0L4P8|SYC_MAGSM Cysteine--tRNA ligase OS=Magnetococcus sp. (strain MC-1) GN=cysS
PE=3 SV=1
Length = 490
Score = 72.8 bits (177), Expect = 5e-13, Method: Composition-based stats.
Identities = 28/49 (57%), Positives = 39/49 (79%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYIL 64
+ IYN++ ++KE F P++PGKVGMYVCGVT YD SH+GHAR + F ++
Sbjct: 10 ITIYNTLGRKKEPFVPMIPGKVGMYVCGVTVYDYSHIGHARVMVVFDVI 58
>sp|B3E1P0|SYC_GEOLS Cysteine--tRNA ligase OS=Geobacter lovleyi (strain ATCC BAA-1151
/ DSM 17278 / SZ) GN=cysS PE=3 SV=1
Length = 487
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 31/52 (59%), Positives = 39/52 (75%)
Query: 14 MDLIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYILY 65
M L +YN+++ +KE F P V GKVGMYVCGVT YD H+GHARA I F ++Y
Sbjct: 1 MALRLYNTLSGEKEPFVPRVAGKVGMYVCGVTVYDFCHIGHARAGIVFDMIY 52
>sp|A1S4X2|SYC_SHEAM Cysteine--tRNA ligase OS=Shewanella amazonensis (strain ATCC
BAA-1098 / SB2B) GN=cysS PE=3 SV=1
Length = 459
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 30/46 (65%), Positives = 36/46 (78%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF 61
L IYNS+++QKE F PI PGK+GMYVCGVT YDL H+GH R + F
Sbjct: 2 LKIYNSISRQKEEFKPIQPGKIGMYVCGVTIYDLCHIGHGRTFVCF 47
>sp|Q31H54|SYC_THICR Cysteine--tRNA ligase OS=Thiomicrospira crunogena (strain XCL-2)
GN=cysS PE=3 SV=1
Length = 456
Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats.
Identities = 31/48 (64%), Positives = 36/48 (75%)
Query: 14 MDLIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF 61
M L IYN+ T+QKE FTPI P KVG+YVCGVT YD H+GHAR + F
Sbjct: 1 MALKIYNTETRQKETFTPIQPNKVGLYVCGVTVYDYCHVGHARVMVVF 48
>sp|Q7N0S5|SYC_PHOLL Cysteine--tRNA ligase OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=cysS PE=3 SV=1
Length = 461
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 29/49 (59%), Positives = 39/49 (79%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYIL 64
L I+N++++QKE F PI PGKVGMYVCG+T YDL H+GH R +SF ++
Sbjct: 2 LKIFNTLSRQKEEFKPIHPGKVGMYVCGITIYDLCHIGHGRTFVSFDVV 50
>sp|Q1MQR5|SYC_LAWIP Cysteine--tRNA ligase OS=Lawsonia intracellularis (strain
PHE/MN1-00) GN=cysS PE=3 SV=1
Length = 485
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 29/47 (61%), Positives = 39/47 (82%)
Query: 18 IYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYIL 64
+YN+M ++KE PI+ GK+G+YVCG+TAYD SH+GHAR+AI F IL
Sbjct: 3 LYNTMEKKKEPLIPIISGKLGIYVCGITAYDFSHIGHARSAIVFDIL 49
>sp|A5G949|SYC_GEOUR Cysteine--tRNA ligase OS=Geobacter uraniireducens (strain Rf4)
GN=cysS PE=3 SV=1
Length = 494
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/52 (59%), Positives = 38/52 (73%)
Query: 14 MDLIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYILY 65
M L +YN++T KE F PI PGKV MYVCGVT YD H+GHARA + F ++Y
Sbjct: 1 MALRVYNTLTGTKEDFVPIEPGKVKMYVCGVTVYDHCHIGHARANVVFDVIY 52
>sp|Q5QYP3|SYC_IDILO Cysteine--tRNA ligase OS=Idiomarina loihiensis (strain ATCC
BAA-735 / DSM 15497 / L2-TR) GN=cysS PE=3 SV=1
Length = 459
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/51 (54%), Positives = 40/51 (78%)
Query: 14 MDLIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYIL 64
M L ++N++T++K+LF PI PG VG+YVCGVT YD H+GHAR ++F I+
Sbjct: 1 MALTVFNTLTRKKQLFEPIQPGHVGIYVCGVTTYDYCHIGHARTYVAFDIV 51
>sp|C4XSW5|SYC_DESMR Cysteine--tRNA ligase OS=Desulfovibrio magneticus (strain ATCC
700980 / DSM 13731 / RS-1) GN=cysS PE=3 SV=1
Length = 485
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/47 (61%), Positives = 38/47 (80%)
Query: 18 IYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYIL 64
+YN+MT+ KE F VPGKV MYVCG+TAYDL H+GHAR+++ F +L
Sbjct: 3 LYNTMTRTKEPFVSRVPGKVAMYVCGITAYDLCHIGHARSSVVFDVL 49
>sp|Q47XL5|SYC_COLP3 Cysteine--tRNA ligase OS=Colwellia psychrerythraea (strain 34H /
ATCC BAA-681) GN=cysS PE=3 SV=1
Length = 469
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/46 (65%), Positives = 36/46 (78%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF 61
L IYN++++QKE FTPI GKVG+YVCG T YDL H+GH R ISF
Sbjct: 2 LQIYNTLSRQKETFTPINAGKVGLYVCGCTVYDLCHIGHGRTYISF 47
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,825,846
Number of Sequences: 539616
Number of extensions: 642951
Number of successful extensions: 1843
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1032
Number of HSP's gapped (non-prelim): 804
length of query: 66
length of database: 191,569,459
effective HSP length: 38
effective length of query: 28
effective length of database: 171,064,051
effective search space: 4789793428
effective search space used: 4789793428
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)