Query 036777
Match_columns 66
No_of_seqs 161 out of 1005
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:38:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqo_A Cysteinyl-tRNA syntheta 99.9 4.7E-25 1.6E-29 165.3 -1.0 54 13-66 2-55 (462)
2 3sp1_A Cysteinyl-tRNA syntheta 99.9 3.5E-24 1.2E-28 162.3 -0.9 54 11-66 19-72 (501)
3 1li5_A Cysrs, cysteinyl-tRNA s 99.9 1.4E-23 5E-28 155.7 -1.0 51 16-66 2-52 (461)
4 3c8z_A Cysteinyl-tRNA syntheta 99.8 1.9E-21 6.5E-26 142.0 -0.5 54 11-66 16-69 (414)
5 3h99_A Methionyl-tRNA syntheta 98.6 5.3E-10 1.8E-14 83.5 -4.1 37 30-66 11-49 (560)
6 4dlp_A Aminoacyl-tRNA syntheta 98.6 1E-09 3.5E-14 81.6 -4.0 41 26-66 14-56 (536)
7 1f7u_A Arginyl-tRNA synthetase 98.4 1.8E-08 6.1E-13 77.3 -2.5 34 33-66 141-174 (607)
8 2d5b_A Methionyl-tRNA syntheta 98.3 9.9E-09 3.4E-13 75.1 -4.1 29 38-66 4-34 (500)
9 2csx_A Methionyl-tRNA syntheta 98.3 7.3E-09 2.5E-13 76.0 -5.0 30 37-66 5-36 (497)
10 2zue_A Arginyl-tRNA synthetase 98.3 2.6E-08 8.9E-13 76.4 -3.5 34 33-66 117-150 (629)
11 1iq0_A Arginyl-tRNA synthetase 98.2 2.7E-08 9.3E-13 75.5 -3.9 31 36-66 104-134 (592)
12 1irx_A Lysyl-tRNA synthetase; 98.2 2.2E-08 7.5E-13 74.7 -4.7 28 39-66 21-50 (523)
13 3kfl_A Methionyl-tRNA syntheta 98.1 2.9E-08 1E-12 74.6 -5.2 42 25-66 13-57 (564)
14 2x1l_A Methionyl-tRNA syntheta 97.7 5E-07 1.7E-11 66.7 -4.9 27 40-66 17-43 (524)
15 2v0c_A Aminoacyl-tRNA syntheta 97.0 2.9E-05 1E-09 61.6 -3.4 32 35-66 31-64 (878)
16 3u1f_A Methionyl-tRNA syntheta 96.8 1.9E-05 6.4E-10 58.2 -5.2 28 39-66 11-40 (542)
17 1rqg_A Methionyl-tRNA syntheta 96.6 7.8E-05 2.7E-09 57.8 -3.3 30 37-66 4-34 (722)
18 2hz7_A Glutaminyl-tRNA synthet 96.5 7.3E-05 2.5E-09 60.0 -4.4 31 34-64 61-93 (851)
19 4arc_A Leucine--tRNA ligase; l 96.5 0.00012 4E-09 58.5 -3.3 32 35-66 51-84 (880)
20 1qtq_A GLNRS, protein (glutami 95.3 0.00048 1.6E-08 53.0 -4.5 24 41-64 30-53 (553)
21 3aii_A Glutamyl-tRNA synthetas 94.6 0.00085 2.9E-08 51.7 -4.7 25 40-64 99-123 (553)
22 1nzj_A Hypothetical protein YA 92.0 0.014 4.7E-07 41.3 -1.6 18 43-60 11-28 (298)
23 1wkb_A Leucyl-tRNA synthetase; 91.3 0.0089 3E-07 46.5 -3.5 31 36-66 35-65 (810)
24 1gax_A Valrs, valyl-tRNA synth 90.9 0.011 3.8E-07 47.0 -3.4 31 36-66 35-65 (862)
25 2o5r_A Glutamyl-tRNA synthetas 90.8 0.0087 3E-07 44.8 -3.9 31 36-66 12-42 (481)
26 2cfo_A Glutamyl-tRNA synthetas 90.4 0.0071 2.4E-07 45.5 -4.7 20 42-61 6-25 (492)
27 1ile_A Ilers, isoleucyl-tRNA s 90.1 0.012 4E-07 46.1 -3.8 26 41-66 44-69 (821)
28 4g6z_A Glutamate-tRNA ligase; 85.5 0.021 7.3E-07 43.2 -4.8 23 42-64 30-52 (490)
29 1ffy_A Isoleucyl-tRNA syntheta 85.0 0.026 9E-07 45.0 -4.7 30 37-66 50-79 (917)
30 1wz2_A Leucyl-tRNA synthetase; 84.1 0.04 1.4E-06 44.0 -4.0 31 36-66 35-65 (967)
31 2qtd_A Uncharacterized protein 79.3 1.2 4.2E-05 25.9 2.3 16 48-63 16-31 (105)
32 3fnr_A Arginyl-tRNA synthetase 78.9 0.14 4.8E-06 38.1 -2.4 32 35-66 30-61 (464)
33 3a1f_A Cytochrome B-245 heavy 77.6 1.1 3.6E-05 27.3 1.7 12 35-46 146-157 (186)
34 1p90_A NAFY protein, hypotheti 76.7 1.4 4.9E-05 27.7 2.2 15 49-63 21-35 (145)
35 2wfb_A Putative uncharacterize 75.4 1.5 5.1E-05 26.1 1.9 17 47-63 19-35 (120)
36 3al0_C Glutamyl-tRNA(Gln) amid 74.8 0.085 2.9E-06 40.5 -4.7 21 44-64 136-156 (592)
37 1rdu_A Conserved hypothetical 73.6 1.5 5.3E-05 25.8 1.6 16 48-63 17-32 (116)
38 1eo1_A Hypothetical protein MT 72.7 3.2 0.00011 24.7 2.9 17 47-63 15-31 (124)
39 2yx6_A Hypothetical protein PH 71.1 2.5 8.7E-05 25.1 2.2 16 48-63 17-32 (121)
40 1j09_A Glutamyl-tRNA synthetas 70.2 0.45 1.5E-05 35.5 -1.6 18 43-60 7-24 (468)
41 3lyu_A Putative hydrogenase; t 68.9 1.7 5.8E-05 26.6 1.0 9 38-46 110-118 (142)
42 3lrx_A Putative hydrogenase; a 68.2 1.7 5.7E-05 27.1 0.9 11 37-47 114-124 (158)
43 3afh_A Glutamyl-tRNA synthetas 61.8 0.82 2.8E-05 34.3 -1.6 20 41-60 29-48 (488)
44 1o13_A Probable NIFB protein; 61.7 5.1 0.00018 24.7 2.3 15 49-63 30-44 (136)
45 1qfj_A Protein (flavin reducta 52.4 5.9 0.0002 25.1 1.4 12 35-46 193-204 (232)
46 1fdr_A Flavodoxin reductase; f 51.7 5.6 0.00019 25.5 1.2 12 35-46 205-216 (248)
47 2eix_A NADH-cytochrome B5 redu 50.8 6.9 0.00023 25.0 1.6 12 35-46 210-221 (243)
48 2re2_A Uncharacterized protein 50.4 9.5 0.00032 23.4 2.1 14 49-63 32-45 (136)
49 4fk8_A Ferredoxin--NADP reduct 49.1 6.5 0.00022 25.6 1.3 13 34-46 226-238 (271)
50 4eh1_A Flavohemoprotein; struc 48.1 6.4 0.00022 25.0 1.1 12 35-46 200-211 (243)
51 3vo2_A Putative uncharacterize 47.9 6.2 0.00021 26.6 1.0 12 35-46 261-272 (310)
52 2qdx_A Ferredoxin reductase; o 47.4 6.8 0.00023 25.3 1.2 12 35-46 211-222 (257)
53 1fnb_A Ferredoxin-NADP+ reduct 46.7 6.8 0.00023 26.3 1.1 12 35-46 265-276 (314)
54 2bmw_A Ferredoxin--NADP reduct 45.8 7.2 0.00025 25.9 1.1 12 35-46 255-266 (304)
55 1tvc_A Methane monooxygenase c 45.7 8.2 0.00028 24.8 1.3 12 35-46 209-220 (250)
56 2r6h_A NADH:ubiquinone oxidore 45.5 7 0.00024 25.6 1.0 12 35-46 254-265 (290)
57 2cnd_A NADH-dependent nitrate 45.4 9.8 0.00034 24.6 1.7 13 35-47 235-247 (270)
58 1umk_A B5R, NADH-cytochrome B5 44.6 7.6 0.00026 25.3 1.0 12 35-46 241-252 (275)
59 2bgi_A Ferredoxin-NADP(H) redu 43.7 8.4 0.00029 25.3 1.2 12 35-46 225-236 (272)
60 3lo8_A Ferredoxin--NADP reduct 42.9 7.3 0.00025 26.1 0.8 12 35-46 262-273 (311)
61 3jqq_A Ferredoxin NADP reducta 42.1 8.2 0.00028 26.3 0.9 12 35-46 277-288 (316)
62 4gri_A Glutamate--tRNA ligase; 42.0 2.7 9.1E-05 31.5 -1.7 17 44-60 31-47 (512)
63 1vr7_A Adometdc, samdc, S-aden 41.7 12 0.0004 23.9 1.6 10 36-45 89-98 (142)
64 2pia_A Phthalate dioxygenase r 38.4 13 0.00044 25.2 1.5 12 35-46 192-203 (321)
65 1gvh_A Flavohemoprotein; oxido 37.4 12 0.00041 25.8 1.2 11 36-46 356-366 (396)
66 2gpj_A Siderophore-interacting 36.8 11 0.00036 24.8 0.8 12 35-46 190-201 (252)
67 1cqx_A Flavohemoprotein; globi 36.4 13 0.00044 25.8 1.2 11 36-46 362-372 (403)
68 4g1v_A Flavohemoglobin; three 35.0 13 0.00043 25.9 1.0 11 36-46 356-366 (399)
69 2b5o_A FNR, ferredoxin--NADP r 33.2 14 0.00048 26.1 1.0 12 35-46 353-364 (402)
70 1f20_A Nitric-oxide synthase; 32.8 14 0.00049 26.6 1.0 11 35-45 380-390 (435)
71 1ep3_B Dihydroorotate dehydrog 31.9 16 0.00054 23.8 1.0 11 36-46 191-201 (262)
72 4dql_A Bifunctional P-450/NADP 31.1 12 0.0004 26.8 0.3 10 36-45 338-347 (393)
73 4ggc_A P55CDC, cell division c 30.2 56 0.0019 20.0 3.4 21 9-29 40-60 (318)
74 2iii_A S-adenosylmethionine de 28.1 24 0.00083 22.1 1.4 10 36-45 78-87 (135)
75 1krh_A Benzoate 1,2-dioxygenas 27.0 15 0.0005 24.8 0.2 12 35-46 300-311 (338)
76 1ddg_A Sulfite reductase (NADP 27.0 19 0.00063 25.5 0.7 10 36-45 321-331 (374)
77 2ja2_A Glutamyl-tRNA synthetas 26.0 7.1 0.00024 29.4 -1.6 17 44-60 13-29 (498)
78 2qtl_A MSR;, methionine syntha 25.9 19 0.00065 26.9 0.7 10 36-45 485-494 (539)
79 2ln7_A LPXTG-SITE transpeptida 24.8 1.3E+02 0.0043 18.4 4.5 15 33-49 113-127 (147)
80 3qfs_A CPR, P450R, NADPH--cyto 24.2 18 0.00062 26.6 0.3 9 36-44 404-412 (458)
81 1gff_3 Bacteriophage G4 capsid 23.9 47 0.0016 15.6 1.6 11 1-11 1-11 (26)
82 3rcc_A Sortase SRTA; sortase f 23.5 73 0.0025 19.9 3.0 21 34-61 120-140 (160)
83 3qe2_A CPR, P450R, NADPH--cyto 22.5 20 0.0007 27.1 0.3 9 37-45 565-573 (618)
84 4fyk_A Deoxyribonucleoside 5'- 22.1 33 0.0011 21.9 1.2 12 37-48 3-14 (152)
85 3fn5_A Sortase A; sortase-fold 21.7 99 0.0034 20.0 3.5 11 34-44 138-148 (187)
86 1tll_A Nitric-oxide synthase, 21.3 26 0.0009 26.9 0.7 10 36-45 602-611 (688)
87 2bpo_A CPR, P450R, NADPH-cytoc 20.9 30 0.001 26.5 0.9 9 36-44 629-637 (682)
88 1t1j_A Hypothetical protein; s 20.9 37 0.0013 21.1 1.2 10 38-47 10-19 (125)
89 4b4t_U RPN8, 26S proteasome re 20.0 49 0.0017 23.2 1.8 14 35-48 88-101 (338)
No 1
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.89 E-value=4.7e-25 Score=165.32 Aligned_cols=54 Identities=50% Similarity=0.916 Sum_probs=52.1
Q ss_pred CcceEEEeCCCCceEEeeecCCCeeeeEEeCCccCCCCCCCccceEEEEEeeeC
Q 036777 13 KMDLIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYILYS 66 (66)
Q Consensus 13 ~~~l~lyntltr~ke~f~p~~~~~v~~Y~CGPTvYd~~HiGhaR~~V~~Dvl~R 66 (66)
.|.|+||||+||+||+|+|.++++|+||+||||||+.+||||+|++|++|+|+|
T Consensus 2 ~m~l~~yntlt~~ke~f~p~~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R 55 (462)
T 3tqo_A 2 AMSVKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVR 55 (462)
T ss_dssp CCCCEEEETTTTEEEECCCSSTTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCceeccccCCCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999999987
No 2
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.87 E-value=3.5e-24 Score=162.27 Aligned_cols=54 Identities=31% Similarity=0.473 Sum_probs=49.5
Q ss_pred CCCcceEEEeCCCCceEEeeecCCCeeeeEEeCCccCCCCCCCccceEEEEEeeeC
Q 036777 11 APKMDLIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYILYS 66 (66)
Q Consensus 11 ~~~~~l~lyntltr~ke~f~p~~~~~v~~Y~CGPTvYd~~HiGhaR~~V~~Dvl~R 66 (66)
-..|+|+||||+||+||+|+|++ +|+||+||||||+.+||||||+||+||+|+|
T Consensus 19 ~~~m~l~lyntltr~ke~f~p~~--~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R 72 (501)
T 3sp1_A 19 PGSMILKLYNTRTKDFSELTNFE--NVKVYACGPTVYNYAHIGNFRTYIFGDLLIK 72 (501)
T ss_dssp ---CCEEEEETTTTEEEEECCCS--CEEEEECCCBCSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCccccccccC--cceEEeCCCcCCCCcchhhhHHHHHHHHHHH
Confidence 34578999999999999999987 9999999999999999999999999999987
No 3
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.86 E-value=1.4e-23 Score=155.68 Aligned_cols=51 Identities=53% Similarity=1.021 Sum_probs=50.0
Q ss_pred eEEEeCCCCceEEeeecCCCeeeeEEeCCccCCCCCCCccceEEEEEeeeC
Q 036777 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYILYS 66 (66)
Q Consensus 16 l~lyntltr~ke~f~p~~~~~v~~Y~CGPTvYd~~HiGhaR~~V~~Dvl~R 66 (66)
|+||||+||+||+|+|+++|+|+||+||||||+.+||||+|++|++|+|+|
T Consensus 2 l~~ynt~t~~~~~f~p~~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R 52 (461)
T 1li5_A 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVAR 52 (461)
T ss_dssp CEEEETTTTEEEECCCSSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHH
T ss_pred cEEEeCCCCCccccccCCCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999987
No 4
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.80 E-value=1.9e-21 Score=142.02 Aligned_cols=54 Identities=35% Similarity=0.627 Sum_probs=51.2
Q ss_pred CCCcceEEEeCCCCceEEeeecCCCeeeeEEeCCccCCCCCCCccceEEEEEeeeC
Q 036777 11 APKMDLIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYILYS 66 (66)
Q Consensus 11 ~~~~~l~lyntltr~ke~f~p~~~~~v~~Y~CGPTvYd~~HiGhaR~~V~~Dvl~R 66 (66)
+..++|+||||+|+++++|.| +++++||+||||||+.+||||+|++|.+|+|+|
T Consensus 16 ~~~~~~~lynt~~~~~~~f~p--~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR 69 (414)
T 3c8z_A 16 GRGPALRLFDSADRQVRPVTP--GPTATMYVCGITPYDATHLGHAATYLTFDLVHR 69 (414)
T ss_dssp SCCCCCEEEETTTTEEEECCC--CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEeeccCCcccccC--CCCceEEeCCCcCCCCcCccccHHHHHHHHHHH
Confidence 566789999999999999999 789999999999999999999999999999986
No 5
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=98.65 E-value=5.3e-10 Score=83.53 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=30.0
Q ss_pred eecCCCeeeeEEeCCccC--CCCCCCccceEEEEEeeeC
Q 036777 30 TPIVPGKVGMYVCGVTAY--DLSHLGHARAAISFYILYS 66 (66)
Q Consensus 30 ~p~~~~~v~~Y~CGPTvY--d~~HiGhaR~~V~~Dvl~R 66 (66)
.|.+++++++|+|+|++| +.+||||+|++|..|+|+|
T Consensus 11 ~~~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR 49 (560)
T 3h99_A 11 GSMTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVR 49 (560)
T ss_dssp ------CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHH
Confidence 466789999999999999 9999999999999999986
No 6
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=98.59 E-value=1e-09 Score=81.63 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=28.9
Q ss_pred eEEeeecCCCeeeeEEeCCccC--CCCCCCccceEEEEEeeeC
Q 036777 26 KELFTPIVPGKVGMYVCGVTAY--DLSHLGHARAAISFYILYS 66 (66)
Q Consensus 26 ke~f~p~~~~~v~~Y~CGPTvY--d~~HiGhaR~~V~~Dvl~R 66 (66)
..|+.|.+-++-++|+|||++| +.+||||+|++|..|+|+|
T Consensus 14 ~~~~~~~~~~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR 56 (536)
T 4dlp_A 14 AQTQGPGSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMAR 56 (536)
T ss_dssp ----------CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHH
T ss_pred ccccCCCcCCCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHH
Confidence 3455554434458999999999 9999999999999999876
No 7
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=98.36 E-value=1.8e-08 Score=77.34 Aligned_cols=34 Identities=24% Similarity=0.090 Sum_probs=31.7
Q ss_pred CCCeeeeEEeCCccCCCCCCCccceEEEEEeeeC
Q 036777 33 VPGKVGMYVCGVTAYDLSHLGHARAAISFYILYS 66 (66)
Q Consensus 33 ~~~~v~~Y~CGPTvYd~~HiGhaR~~V~~Dvl~R 66 (66)
.+++|.+|.|||+|++..||||+|+.|..|+|+|
T Consensus 141 ~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laR 174 (607)
T 1f7u_A 141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLAN 174 (607)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCCCCCCCccchHHHHHHHHHHHH
Confidence 4678999999999999999999999999999876
No 8
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=98.34 E-value=9.9e-09 Score=75.12 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=27.3
Q ss_pred eeEEeCCccC--CCCCCCccceEEEEEeeeC
Q 036777 38 GMYVCGVTAY--DLSHLGHARAAISFYILYS 66 (66)
Q Consensus 38 ~~Y~CGPTvY--d~~HiGhaR~~V~~Dvl~R 66 (66)
++|+|||++| +..||||+|+++..|+++|
T Consensus 4 ~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R 34 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLAR 34 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHH
Confidence 6899999997 9999999999999999986
No 9
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=98.33 E-value=7.3e-09 Score=76.03 Aligned_cols=30 Identities=33% Similarity=0.475 Sum_probs=28.2
Q ss_pred eeeEEeCCccC--CCCCCCccceEEEEEeeeC
Q 036777 37 VGMYVCGVTAY--DLSHLGHARAAISFYILYS 66 (66)
Q Consensus 37 v~~Y~CGPTvY--d~~HiGhaR~~V~~Dvl~R 66 (66)
-++|+|||++| +.+||||+|+++..|+++|
T Consensus 5 ~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R 36 (497)
T 2csx_A 5 KKFYVTTPIYYVNDVPHLGHAYTTIAADTIAR 36 (497)
T ss_dssp CEEEEEEEEEETTSCCCHHHHHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCCccchhhHHHHHHHHHHHH
Confidence 47999999999 9999999999999999986
No 10
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=98.26 E-value=2.6e-08 Score=76.44 Aligned_cols=34 Identities=29% Similarity=0.207 Sum_probs=31.6
Q ss_pred CCCeeeeEEeCCccCCCCCCCccceEEEEEeeeC
Q 036777 33 VPGKVGMYVCGVTAYDLSHLGHARAAISFYILYS 66 (66)
Q Consensus 33 ~~~~v~~Y~CGPTvYd~~HiGhaR~~V~~Dvl~R 66 (66)
.+++|.+|.|||+|++..||||+|+.|+.|+|+|
T Consensus 117 ~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR 150 (629)
T 2zue_A 117 KGKKVIVEHTSVNPTKPLHMGHARNAILGDVMAR 150 (629)
T ss_dssp TTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHH
Confidence 4578999999999999999999999999999876
No 11
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=98.23 E-value=2.7e-08 Score=75.49 Aligned_cols=31 Identities=19% Similarity=0.045 Sum_probs=29.8
Q ss_pred eeeeEEeCCccCCCCCCCccceEEEEEeeeC
Q 036777 36 KVGMYVCGVTAYDLSHLGHARAAISFYILYS 66 (66)
Q Consensus 36 ~v~~Y~CGPTvYd~~HiGhaR~~V~~Dvl~R 66 (66)
+|.+|.|||+|++.+||||+|++|..|+|+|
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR 134 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIAR 134 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHH
Confidence 8999999999999999999999999999876
No 12
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=98.21 E-value=2.2e-08 Score=74.74 Aligned_cols=28 Identities=32% Similarity=0.547 Sum_probs=26.5
Q ss_pred eEEe--CCccCCCCCCCccceEEEEEeeeC
Q 036777 39 MYVC--GVTAYDLSHLGHARAAISFYILYS 66 (66)
Q Consensus 39 ~Y~C--GPTvYd~~HiGhaR~~V~~Dvl~R 66 (66)
.|+| |||+++++||||+|++|+.|+++|
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR 50 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGH 50 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHH
Confidence 7999 999999999999999999999865
No 13
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=98.15 E-value=2.9e-08 Score=74.65 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=29.3
Q ss_pred ceEEeeecCC-CeeeeEEeCCccC--CCCCCCccceEEEEEeeeC
Q 036777 25 QKELFTPIVP-GKVGMYVCGVTAY--DLSHLGHARAAISFYILYS 66 (66)
Q Consensus 25 ~ke~f~p~~~-~~v~~Y~CGPTvY--d~~HiGhaR~~V~~Dvl~R 66 (66)
+..+|.|..+ +.-++|+|+|++| +.+||||+|++|..|+|+|
T Consensus 13 ~~~~~~~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR 57 (564)
T 3kfl_A 13 EAQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGR 57 (564)
T ss_dssp -----------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHH
T ss_pred hhhhcCCccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHH
Confidence 4456666543 3468999999999 9999999999999999976
No 14
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=97.73 E-value=5e-07 Score=66.65 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=21.6
Q ss_pred EEeCCccCCCCCCCccceEEEEEeeeC
Q 036777 40 YVCGVTAYDLSHLGHARAAISFYILYS 66 (66)
Q Consensus 40 Y~CGPTvYd~~HiGhaR~~V~~Dvl~R 66 (66)
.++.|+|.+.+||||+|+++..|+|+|
T Consensus 17 ~t~~P~~ng~lHiGHa~~~i~~D~l~R 43 (524)
T 2x1l_A 17 TTAIAYPNGVPHIGHAYEYIATDAIAR 43 (524)
T ss_dssp EECCBCCSSCCCHHHHHHHHHHHHHHH
T ss_pred eeCCCCCCCCcccchhHHHHHHHHHHH
Confidence 334444459999999999999999986
No 15
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=96.97 E-value=2.9e-05 Score=61.57 Aligned_cols=32 Identities=22% Similarity=0.147 Sum_probs=25.7
Q ss_pred CeeeeEEe-C-CccCCCCCCCccceEEEEEeeeC
Q 036777 35 GKVGMYVC-G-VTAYDLSHLGHARAAISFYILYS 66 (66)
Q Consensus 35 ~~v~~Y~C-G-PTvYd~~HiGhaR~~V~~Dvl~R 66 (66)
++-+.|++ | |+++...||||+|+++..|+|.|
T Consensus 31 ~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~R 64 (878)
T 2v0c_A 31 GRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLAR 64 (878)
T ss_dssp ---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHH
Confidence 44456666 4 99999999999999999999976
No 16
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=96.83 E-value=1.9e-05 Score=58.25 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=23.2
Q ss_pred eEEeCC--ccCCCCCCCccceEEEEEeeeC
Q 036777 39 MYVCGV--TAYDLSHLGHARAAISFYILYS 66 (66)
Q Consensus 39 ~Y~CGP--TvYd~~HiGhaR~~V~~Dvl~R 66 (66)
.|++-| .|.+.+|||||+++|.+|+++|
T Consensus 11 f~Ittp~pY~nG~lHiGHa~~~~~~Dii~R 40 (542)
T 3u1f_A 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGR 40 (542)
T ss_dssp EEEEEEEEECSSCCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCchhhHHHHHHHHHHHHHH
Confidence 455554 5569999999999999999987
No 17
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=96.63 E-value=7.8e-05 Score=57.83 Aligned_cols=30 Identities=17% Similarity=0.005 Sum_probs=26.3
Q ss_pred eeeEEeCCccCCCCCCCccce-EEEEEeeeC
Q 036777 37 VGMYVCGVTAYDLSHLGHARA-AISFYILYS 66 (66)
Q Consensus 37 v~~Y~CGPTvYd~~HiGhaR~-~V~~Dvl~R 66 (66)
.-+.+..|+|++.+||||+++ +|..|++.|
T Consensus 4 ~~itt~~Py~nG~lHiGHa~~~~i~~DiiaR 34 (722)
T 1rqg_A 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVR 34 (722)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHTHHHHHHHH
T ss_pred EEEecCCCCCCCchhhchhhccHHHHHHHHH
Confidence 445677899999999999998 999999986
No 18
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=96.49 E-value=7.3e-05 Score=59.98 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=26.1
Q ss_pred CCeeeeEEe--CCccCCCCCCCccceEEEEEee
Q 036777 34 PGKVGMYVC--GVTAYDLSHLGHARAAISFYIL 64 (66)
Q Consensus 34 ~~~v~~Y~C--GPTvYd~~HiGhaR~~V~~Dvl 64 (66)
+|+++.|+| +|+++++.||||||++++..++
T Consensus 61 ~g~~~~v~tRFaPSPtG~LHIGhARtAL~n~l~ 93 (851)
T 2hz7_A 61 AGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNT 93 (851)
T ss_dssp TTSCSSCEEEECCCSSSCCBHHHHHHHHHHHHH
T ss_pred cCCcCceEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 567778888 9999999999999998865443
No 19
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=96.48 E-value=0.00012 Score=58.51 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=27.6
Q ss_pred CeeeeEEe--CCccCCCCCCCccceEEEEEeeeC
Q 036777 35 GKVGMYVC--GVTAYDLSHLGHARAAISFYILYS 66 (66)
Q Consensus 35 ~~v~~Y~C--GPTvYd~~HiGhaR~~V~~Dvl~R 66 (66)
++-+.|+| .|++....||||+|+++..|+|.|
T Consensus 51 ~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaR 84 (880)
T 4arc_A 51 SKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIAR 84 (880)
T ss_dssp TSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHH
Confidence 45567776 789999999999999999999976
No 20
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=95.25 E-value=0.00048 Score=53.03 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.1
Q ss_pred EeCCccCCCCCCCccceEEEEEee
Q 036777 41 VCGVTAYDLSHLGHARAAISFYIL 64 (66)
Q Consensus 41 ~CGPTvYd~~HiGhaR~~V~~Dvl 64 (66)
-.+|+++.+.||||||++++.+++
T Consensus 30 RFaPSPtG~LHIGhaRtal~n~l~ 53 (553)
T 1qtq_A 30 RFPPEPNGYLHIGHAKSICLNFGI 53 (553)
T ss_dssp EECCCTTSCCBHHHHHHHHHHHHH
T ss_pred EeCCCCCCCccHHHHHHHHHHHHH
Confidence 468999999999999998865544
No 21
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.59 E-value=0.00085 Score=51.65 Aligned_cols=25 Identities=32% Similarity=0.238 Sum_probs=20.5
Q ss_pred EEeCCccCCCCCCCccceEEEEEee
Q 036777 40 YVCGVTAYDLSHLGHARAAISFYIL 64 (66)
Q Consensus 40 Y~CGPTvYd~~HiGhaR~~V~~Dvl 64 (66)
---.||++++.||||||++++..++
T Consensus 99 tRFaPsPtG~LHIGhaRtal~n~l~ 123 (553)
T 3aii_A 99 LRFAPNPSGPLHIGHARAAILNHEY 123 (553)
T ss_dssp EEECCCSSSSCBHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHH
Confidence 4567999999999999998865544
No 22
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=92.01 E-value=0.014 Score=41.31 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=15.8
Q ss_pred CCccCCCCCCCccceEEE
Q 036777 43 GVTAYDLSHLGHARAAIS 60 (66)
Q Consensus 43 GPTvYd~~HiGhaR~~V~ 60 (66)
-|+++.+.||||+|+++.
T Consensus 11 APsPtG~LHiG~~rtal~ 28 (298)
T 1nzj_A 11 APSPSGELHFGSLIAALG 28 (298)
T ss_dssp CCCTTSCCCHHHHHHHHH
T ss_pred CcCCCCCccHHHHHHHHH
Confidence 479999999999999763
No 23
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=91.25 E-value=0.0089 Score=46.45 Aligned_cols=31 Identities=23% Similarity=0.091 Sum_probs=25.4
Q ss_pred eeeeEEeCCccCCCCCCCccceEEEEEeeeC
Q 036777 36 KVGMYVCGVTAYDLSHLGHARAAISFYILYS 66 (66)
Q Consensus 36 ~v~~Y~CGPTvYd~~HiGhaR~~V~~Dvl~R 66 (66)
+.-+..--|.+-...||||+|+++.-|++.|
T Consensus 35 ~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R 65 (810)
T 1wkb_A 35 KFYITVAFPYLSGHLHVGHARTYTIPDVIAR 65 (810)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCccccchhHHHHHHHHH
Confidence 3455556677889999999999999999876
No 24
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=90.85 E-value=0.011 Score=46.97 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=27.6
Q ss_pred eeeeEEeCCccCCCCCCCccceEEEEEeeeC
Q 036777 36 KVGMYVCGVTAYDLSHLGHARAAISFYILYS 66 (66)
Q Consensus 36 ~v~~Y~CGPTvYd~~HiGhaR~~V~~Dvl~R 66 (66)
+.-++..-|.+-...||||+++++.-|++.|
T Consensus 35 ~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~R 65 (862)
T 1gax_A 35 PFVIFMPPPNVTGSLHMGHALDNSLQDALIR 65 (862)
T ss_dssp EEEEECCCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCCCCCCcchhhhHHHHHHHHHHH
Confidence 4677788899999999999999999999876
No 25
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=90.79 E-value=0.0087 Score=44.82 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=24.8
Q ss_pred eeeeEEeCCccCCCCCCCccceEEEEEeeeC
Q 036777 36 KVGMYVCGVTAYDLSHLGHARAAISFYILYS 66 (66)
Q Consensus 36 ~v~~Y~CGPTvYd~~HiGhaR~~V~~Dvl~R 66 (66)
.|-...+.|++..+.||||+|+.++.|++.|
T Consensus 12 ~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar 42 (481)
T 2o5r_A 12 HMVRVRFAPSPTGFLHVGGARTALFNFLFAR 42 (481)
T ss_dssp -CCEEEECCCCCSCCBHHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCCcCHHHHHHHHHHHHHHH
Confidence 4556677888889999999999988877654
No 26
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=90.38 E-value=0.0071 Score=45.52 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=17.4
Q ss_pred eCCccCCCCCCCccceEEEE
Q 036777 42 CGVTAYDLSHLGHARAAISF 61 (66)
Q Consensus 42 CGPTvYd~~HiGhaR~~V~~ 61 (66)
..|+++.+.||||+|++++-
T Consensus 6 FAPSPtG~lHiG~artal~n 25 (492)
T 2cfo_A 6 LAPSPTGNLHIGTARTAVFN 25 (492)
T ss_dssp ECCCTTSCCBHHHHHHHHHH
T ss_pred eCCCCCCCccHHHHHHHHHH
Confidence 46899999999999998753
No 27
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=90.14 E-value=0.012 Score=46.07 Aligned_cols=26 Identities=31% Similarity=0.239 Sum_probs=21.2
Q ss_pred EeCCccCCCCCCCccceEEEEEeeeC
Q 036777 41 VCGVTAYDLSHLGHARAAISFYILYS 66 (66)
Q Consensus 41 ~CGPTvYd~~HiGhaR~~V~~Dvl~R 66 (66)
.--|.+-...||||+++++.-|++.|
T Consensus 44 ~~pPy~nG~lHiGH~~~~~~~D~i~R 69 (821)
T 1ile_A 44 EGPPTANGLPHVGHAQARSYKDLFPR 69 (821)
T ss_dssp CCCCCTTSCCCTTHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCchhhhHhHHHHHHHHH
Confidence 33455668999999999999999876
No 28
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=85.53 E-value=0.021 Score=43.19 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=18.5
Q ss_pred eCCccCCCCCCCccceEEEEEee
Q 036777 42 CGVTAYDLSHLGHARAAISFYIL 64 (66)
Q Consensus 42 CGPTvYd~~HiGhaR~~V~~Dvl 64 (66)
--|++..+.||||+|++++.+++
T Consensus 30 FAPSPTG~lHiG~~rtal~n~l~ 52 (490)
T 4g6z_A 30 FAPSPTGFIHLGNIRSALYPWAF 52 (490)
T ss_dssp ECCCCCSCCBHHHHHHHHHHHHH
T ss_pred eCCCCCCCccHHHHHHHHHHHHH
Confidence 34789999999999998865543
No 29
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=84.97 E-value=0.026 Score=45.00 Aligned_cols=30 Identities=20% Similarity=0.016 Sum_probs=24.2
Q ss_pred eeeEEeCCccCCCCCCCccceEEEEEeeeC
Q 036777 37 VGMYVCGVTAYDLSHLGHARAAISFYILYS 66 (66)
Q Consensus 37 v~~Y~CGPTvYd~~HiGhaR~~V~~Dvl~R 66 (66)
.-+..--|.+-...||||+++++.-|++.|
T Consensus 50 f~i~~~pPY~nG~lHiGHa~n~~~~Dii~R 79 (917)
T 1ffy_A 50 FILHDGPPYANGNLHMGHALNKILKDFIVR 79 (917)
T ss_dssp CCEECCCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred eeeCCCCCCCCCcchHHHHHHHHHHHHHHH
Confidence 334445578889999999999999999876
No 30
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=84.08 E-value=0.04 Score=43.97 Aligned_cols=31 Identities=23% Similarity=0.091 Sum_probs=26.1
Q ss_pred eeeeEEeCCccCCCCCCCccceEEEEEeeeC
Q 036777 36 KVGMYVCGVTAYDLSHLGHARAAISFYILYS 66 (66)
Q Consensus 36 ~v~~Y~CGPTvYd~~HiGhaR~~V~~Dvl~R 66 (66)
+.-++.--|.+-...||||+++++.-|++.|
T Consensus 35 kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~R 65 (967)
T 1wz2_A 35 KFYITVAFPYLSGHLHVGHARTYTIPDVIAR 65 (967)
T ss_dssp CCBEEECCCBCSSCCBHHHHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCcchhhhHHHHHHHHHHH
Confidence 3456667788889999999999999999876
No 31
>2qtd_A Uncharacterized protein MJ0327; ribonuclease H-like motif fold, iron-molybdenum cofactor, ST genomics; HET: MSE PG4; 1.70A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 2kla_A
Probab=79.25 E-value=1.2 Score=25.93 Aligned_cols=16 Identities=6% Similarity=-0.031 Sum_probs=14.5
Q ss_pred CCCCCCccceEEEEEe
Q 036777 48 DLSHLGHARAAISFYI 63 (66)
Q Consensus 48 d~~HiGhaR~~V~~Dv 63 (66)
-..|.|||+.|+++|+
T Consensus 16 V~~hFG~a~~F~I~d~ 31 (105)
T 2qtd_A 16 ISNSFEDCKYFLIVRI 31 (105)
T ss_dssp BCSCTTTCSEEEEEEE
T ss_pred cCccCccCCEEEEEEe
Confidence 4689999999999997
No 32
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=78.90 E-value=0.14 Score=38.11 Aligned_cols=32 Identities=22% Similarity=0.149 Sum_probs=25.5
Q ss_pred CeeeeEEeCCccCCCCCCCccceEEEEEeeeC
Q 036777 35 GKVGMYVCGVTAYDLSHLGHARAAISFYILYS 66 (66)
Q Consensus 35 ~~v~~Y~CGPTvYd~~HiGhaR~~V~~Dvl~R 66 (66)
.+|-+=...|.+-...|+||+|+.+.-|.|.|
T Consensus 30 ~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r 61 (464)
T 3fnr_A 30 ESFLLEYVSANPTGPLHIGHARGAVFGDTLTR 61 (464)
T ss_dssp CEEEEECCCCCSSSSCBGGGHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCCCCccchhHHHHHHHHHHH
Confidence 45555566788999999999999998887754
No 33
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=77.64 E-value=1.1 Score=27.33 Aligned_cols=12 Identities=33% Similarity=1.066 Sum_probs=10.0
Q ss_pred CeeeeEEeCCcc
Q 036777 35 GKVGMYVCGVTA 46 (66)
Q Consensus 35 ~~v~~Y~CGPTv 46 (66)
+.+.+|+|||..
T Consensus 146 ~~~~v~~CGP~~ 157 (186)
T 3a1f_A 146 TRIGVFLCGPEA 157 (186)
T ss_dssp CEEEEEEESCHH
T ss_pred CcEEEEEeCCHH
Confidence 478899999964
No 34
>1p90_A NAFY protein, hypothetical protein; ribonuclease H motif, protein binding; 1.80A {Azotobacter vinelandii} SCOP: c.55.5.2
Probab=76.69 E-value=1.4 Score=27.68 Aligned_cols=15 Identities=13% Similarity=0.324 Sum_probs=13.9
Q ss_pred CCCCCccceEEEEEe
Q 036777 49 LSHLGHARAAISFYI 63 (66)
Q Consensus 49 ~~HiGhaR~~V~~Dv 63 (66)
..|.||++.|+++|+
T Consensus 21 ~~HFG~a~~F~Iydv 35 (145)
T 1p90_A 21 DGHFGSCLRFLVYQV 35 (145)
T ss_dssp CCBTTTCSEEEEEEE
T ss_pred cccCCcCCEEEEEEE
Confidence 489999999999997
No 35
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=75.38 E-value=1.5 Score=26.09 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=14.7
Q ss_pred CCCCCCCccceEEEEEe
Q 036777 47 YDLSHLGHARAAISFYI 63 (66)
Q Consensus 47 Yd~~HiGhaR~~V~~Dv 63 (66)
.-..|.|||+.|+++|+
T Consensus 19 ~V~~hFG~a~~F~I~d~ 35 (120)
T 2wfb_A 19 LVDPRFGRAAGFVVVDA 35 (120)
T ss_dssp BBCSCSTTCSEEEEEET
T ss_pred cccCccccCCEEEEEEe
Confidence 34589999999999996
No 36
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=74.76 E-value=0.085 Score=40.54 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=17.7
Q ss_pred CccCCCCCCCccceEEEEEee
Q 036777 44 VTAYDLSHLGHARAAISFYIL 64 (66)
Q Consensus 44 PTvYd~~HiGhaR~~V~~Dvl 64 (66)
|++..+.||||+|+.++-+++
T Consensus 136 PsPTG~LHiG~artAl~n~l~ 156 (592)
T 3al0_C 136 PSPTGHLHVGGARTALFNWMF 156 (592)
T ss_dssp CCSSSCCBHHHHHHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHH
Confidence 999999999999998765443
No 37
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=73.57 E-value=1.5 Score=25.81 Aligned_cols=16 Identities=13% Similarity=0.032 Sum_probs=14.2
Q ss_pred CCCCCCccceEEEEEe
Q 036777 48 DLSHLGHARAAISFYI 63 (66)
Q Consensus 48 d~~HiGhaR~~V~~Dv 63 (66)
-..|.|||+.|+++|+
T Consensus 17 V~~hFG~a~~F~I~d~ 32 (116)
T 1rdu_A 17 VSDRFARAEYFIIYDT 32 (116)
T ss_dssp BCSCGGGCSEEEEEET
T ss_pred ccCccccCCEEEEEEc
Confidence 3579999999999996
No 38
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=72.73 E-value=3.2 Score=24.73 Aligned_cols=17 Identities=12% Similarity=-0.021 Sum_probs=14.9
Q ss_pred CCCCCCCccceEEEEEe
Q 036777 47 YDLSHLGHARAAISFYI 63 (66)
Q Consensus 47 Yd~~HiGhaR~~V~~Dv 63 (66)
.-..|.|||+.|+++|+
T Consensus 15 ~V~~HFG~a~~F~Iyd~ 31 (124)
T 1eo1_A 15 EVSRFFGRAPYFMIVEM 31 (124)
T ss_dssp SSCSCCSSCSCEEEEEE
T ss_pred cCcCccccCCEEEEEEe
Confidence 44679999999999997
No 39
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=71.07 E-value=2.5 Score=25.07 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=14.2
Q ss_pred CCCCCCccceEEEEEe
Q 036777 48 DLSHLGHARAAISFYI 63 (66)
Q Consensus 48 d~~HiGhaR~~V~~Dv 63 (66)
-..|.|+|+.|+++|+
T Consensus 17 V~~hFG~a~~F~I~d~ 32 (121)
T 2yx6_A 17 VSKHFGRSRYFVFVDI 32 (121)
T ss_dssp BCSBTTTCCEEEEEEE
T ss_pred ccccccCCCEEEEEEe
Confidence 3589999999999997
No 40
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=70.17 E-value=0.45 Score=35.52 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=15.6
Q ss_pred CCccCCCCCCCccceEEE
Q 036777 43 GVTAYDLSHLGHARAAIS 60 (66)
Q Consensus 43 GPTvYd~~HiGhaR~~V~ 60 (66)
.|++..+.||||+|+.++
T Consensus 7 aPsPtG~LHiG~~rtal~ 24 (468)
T 1j09_A 7 APSPTGDPHVGTAYIALF 24 (468)
T ss_dssp CCCCSSSCBHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHH
Confidence 578999999999998764
No 41
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=68.85 E-value=1.7 Score=26.64 Aligned_cols=9 Identities=11% Similarity=0.342 Sum_probs=7.7
Q ss_pred eeEEeCCcc
Q 036777 38 GMYVCGVTA 46 (66)
Q Consensus 38 ~~Y~CGPTv 46 (66)
.+|+|||..
T Consensus 110 ~vy~CGP~~ 118 (142)
T 3lyu_A 110 LVFMVGPVG 118 (142)
T ss_dssp EEEEESCHH
T ss_pred EEEEECCHH
Confidence 599999975
No 42
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=68.24 E-value=1.7 Score=27.06 Aligned_cols=11 Identities=9% Similarity=0.108 Sum_probs=8.6
Q ss_pred eeeEEeCCccC
Q 036777 37 VGMYVCGVTAY 47 (66)
Q Consensus 37 v~~Y~CGPTvY 47 (66)
-.+|+|||...
T Consensus 114 ~~vy~CGP~~m 124 (158)
T 3lrx_A 114 DLVFMVGPVGD 124 (158)
T ss_dssp SEEEEESCHHH
T ss_pred CEEEEECCHHH
Confidence 36999999753
No 43
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=61.83 E-value=0.82 Score=34.32 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=16.5
Q ss_pred EeCCccCCCCCCCccceEEE
Q 036777 41 VCGVTAYDLSHLGHARAAIS 60 (66)
Q Consensus 41 ~CGPTvYd~~HiGhaR~~V~ 60 (66)
-..|++..+.||||+|+.+.
T Consensus 29 RFAPsPtG~LHiG~~rtal~ 48 (488)
T 3afh_A 29 RFAPSPTGHLHVGGARTALF 48 (488)
T ss_dssp EECCCCSSSCBHHHHHHHHH
T ss_pred EECCCCCCCccHHHHHHHHH
Confidence 34589999999999998763
No 44
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=61.69 E-value=5.1 Score=24.66 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=14.0
Q ss_pred CCCCCccceEEEEEe
Q 036777 49 LSHLGHARAAISFYI 63 (66)
Q Consensus 49 ~~HiGhaR~~V~~Dv 63 (66)
..|.|+|+.|+++|+
T Consensus 30 ~~HFG~A~~F~Iydv 44 (136)
T 1o13_A 30 SEHFGRAPYFAFVKV 44 (136)
T ss_dssp CSCSTTCSEEEEEEE
T ss_pred cccccCCCEEEEEEe
Confidence 689999999999997
No 45
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=52.38 E-value=5.9 Score=25.12 Aligned_cols=12 Identities=17% Similarity=0.448 Sum_probs=9.2
Q ss_pred CeeeeEEeCCcc
Q 036777 35 GKVGMYVCGVTA 46 (66)
Q Consensus 35 ~~v~~Y~CGPTv 46 (66)
....+|+|||..
T Consensus 193 ~~~~vyvCGp~~ 204 (232)
T 1qfj_A 193 AEHDIYIAGRFE 204 (232)
T ss_dssp TTCEEEEESCHH
T ss_pred cccEEEEECCHH
Confidence 446799999964
No 46
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=51.67 E-value=5.6 Score=25.49 Aligned_cols=12 Identities=17% Similarity=0.443 Sum_probs=9.6
Q ss_pred CeeeeEEeCCcc
Q 036777 35 GKVGMYVCGVTA 46 (66)
Q Consensus 35 ~~v~~Y~CGPTv 46 (66)
....+|+|||..
T Consensus 205 ~~~~vy~CGp~~ 216 (248)
T 1fdr_A 205 ETSHVMLCGNPQ 216 (248)
T ss_dssp TTEEEEEEECHH
T ss_pred cCCEEEEeCCHH
Confidence 557899999964
No 47
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=50.83 E-value=6.9 Score=24.97 Aligned_cols=12 Identities=17% Similarity=0.600 Sum_probs=9.4
Q ss_pred CeeeeEEeCCcc
Q 036777 35 GKVGMYVCGVTA 46 (66)
Q Consensus 35 ~~v~~Y~CGPTv 46 (66)
....+|+|||..
T Consensus 210 ~~~~vy~CGp~~ 221 (243)
T 2eix_A 210 SDIKVMMCGPPM 221 (243)
T ss_dssp SSEEEEEESSHH
T ss_pred CCeEEEEECCHH
Confidence 456799999963
No 48
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=50.41 E-value=9.5 Score=23.41 Aligned_cols=14 Identities=7% Similarity=0.074 Sum_probs=12.3
Q ss_pred CCCCCccceEEEEEe
Q 036777 49 LSHLGHARAAISFYI 63 (66)
Q Consensus 49 ~~HiGhaR~~V~~Dv 63 (66)
..| |+|..|+++|+
T Consensus 32 ~~H-G~A~~F~I~dv 45 (136)
T 2re2_A 32 NGP-GESEEVQIYET 45 (136)
T ss_dssp CCT-TTCSEEEEEEE
T ss_pred ccC-cccCEEEEEEe
Confidence 457 99999999997
No 49
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=49.12 E-value=6.5 Score=25.65 Aligned_cols=13 Identities=38% Similarity=0.759 Sum_probs=10.2
Q ss_pred CCeeeeEEeCCcc
Q 036777 34 PGKVGMYVCGVTA 46 (66)
Q Consensus 34 ~~~v~~Y~CGPTv 46 (66)
++...+|+|||..
T Consensus 226 ~~~~~v~vCGp~~ 238 (271)
T 4fk8_A 226 PEQDRVMLCGSTA 238 (271)
T ss_dssp TTTEEEEEEECHH
T ss_pred CCCCEEEEECCHH
Confidence 4567899999963
No 50
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=48.09 E-value=6.4 Score=25.03 Aligned_cols=12 Identities=25% Similarity=0.664 Sum_probs=9.8
Q ss_pred CeeeeEEeCCcc
Q 036777 35 GKVGMYVCGVTA 46 (66)
Q Consensus 35 ~~v~~Y~CGPTv 46 (66)
+...+|+|||..
T Consensus 200 ~~~~vyvCGp~~ 211 (243)
T 4eh1_A 200 EDGDFYLCGPIG 211 (243)
T ss_dssp TTCEEEEEECHH
T ss_pred CCcEEEEECCHH
Confidence 567899999974
No 51
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=47.85 E-value=6.2 Score=26.58 Aligned_cols=12 Identities=25% Similarity=0.789 Sum_probs=9.7
Q ss_pred CeeeeEEeCCcc
Q 036777 35 GKVGMYVCGVTA 46 (66)
Q Consensus 35 ~~v~~Y~CGPTv 46 (66)
....+|+|||..
T Consensus 261 ~~~~vyvCGp~~ 272 (310)
T 3vo2_A 261 DNTYVYMCGLKG 272 (310)
T ss_dssp TTEEEEEEESTT
T ss_pred CCcEEEEeCCHH
Confidence 467899999963
No 52
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=47.42 E-value=6.8 Score=25.33 Aligned_cols=12 Identities=17% Similarity=0.448 Sum_probs=9.6
Q ss_pred CeeeeEEeCCcc
Q 036777 35 GKVGMYVCGVTA 46 (66)
Q Consensus 35 ~~v~~Y~CGPTv 46 (66)
....+|+|||.-
T Consensus 211 ~~~~vyvCGp~~ 222 (257)
T 2qdx_A 211 QDDRAMICGSPS 222 (257)
T ss_dssp TTEEEEEEECHH
T ss_pred CCCEEEEECCHH
Confidence 557899999963
No 53
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=46.71 E-value=6.8 Score=26.29 Aligned_cols=12 Identities=25% Similarity=0.789 Sum_probs=9.3
Q ss_pred CeeeeEEeCCcc
Q 036777 35 GKVGMYVCGVTA 46 (66)
Q Consensus 35 ~~v~~Y~CGPTv 46 (66)
+...+|+|||..
T Consensus 265 ~~~~vyvCGp~~ 276 (314)
T 1fnb_A 265 DNTYVYMCGLKG 276 (314)
T ss_dssp TTEEEEEEECTT
T ss_pred CCeEEEEECCHH
Confidence 456799999964
No 54
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=45.81 E-value=7.2 Score=25.92 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=9.3
Q ss_pred CeeeeEEeCCcc
Q 036777 35 GKVGMYVCGVTA 46 (66)
Q Consensus 35 ~~v~~Y~CGPTv 46 (66)
....+|+|||..
T Consensus 255 ~~~~vyvCGp~~ 266 (304)
T 2bmw_A 255 QKTHTYICGPPP 266 (304)
T ss_dssp TTEEEEEEECTT
T ss_pred CCcEEEEECCHH
Confidence 346799999964
No 55
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=45.69 E-value=8.2 Score=24.85 Aligned_cols=12 Identities=25% Similarity=0.794 Sum_probs=9.3
Q ss_pred CeeeeEEeCCcc
Q 036777 35 GKVGMYVCGVTA 46 (66)
Q Consensus 35 ~~v~~Y~CGPTv 46 (66)
....+|+|||..
T Consensus 209 ~~~~vyvCGp~~ 220 (250)
T 1tvc_A 209 ANPDIYLCGPPG 220 (250)
T ss_dssp SSSEEEEESSHH
T ss_pred CCcEEEEeCCHH
Confidence 356799999964
No 56
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=45.48 E-value=7 Score=25.60 Aligned_cols=12 Identities=25% Similarity=0.742 Sum_probs=9.2
Q ss_pred CeeeeEEeCCcc
Q 036777 35 GKVGMYVCGVTA 46 (66)
Q Consensus 35 ~~v~~Y~CGPTv 46 (66)
....+|+|||..
T Consensus 254 ~~~~vyvCGp~~ 265 (290)
T 2r6h_A 254 EDIEYYMCGPGP 265 (290)
T ss_dssp GGEEEEEECCHH
T ss_pred CCcEEEEECCHH
Confidence 356799999963
No 57
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=45.36 E-value=9.8 Score=24.61 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=9.6
Q ss_pred CeeeeEEeCCccC
Q 036777 35 GKVGMYVCGVTAY 47 (66)
Q Consensus 35 ~~v~~Y~CGPTvY 47 (66)
....+|+|||...
T Consensus 235 ~~~~vyvCGp~~m 247 (270)
T 2cnd_A 235 DDTLALACGPPPM 247 (270)
T ss_dssp SSEEEEEECCHHH
T ss_pred CCEEEEEECCHHH
Confidence 3456899999753
No 58
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=44.61 E-value=7.6 Score=25.31 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=9.3
Q ss_pred CeeeeEEeCCcc
Q 036777 35 GKVGMYVCGVTA 46 (66)
Q Consensus 35 ~~v~~Y~CGPTv 46 (66)
....+|+|||..
T Consensus 241 ~~~~vyvCGp~~ 252 (275)
T 1umk_A 241 EEPLVLMCGPPP 252 (275)
T ss_dssp GCCEEEEESCHH
T ss_pred CCeEEEEECCHH
Confidence 346799999964
No 59
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=43.74 E-value=8.4 Score=25.31 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=9.6
Q ss_pred CeeeeEEeCCcc
Q 036777 35 GKVGMYVCGVTA 46 (66)
Q Consensus 35 ~~v~~Y~CGPTv 46 (66)
....+|+|||..
T Consensus 225 ~~~~vyvCGp~~ 236 (272)
T 2bgi_A 225 ETDRAMVCGSLA 236 (272)
T ss_dssp TTEEEEEEECHH
T ss_pred CCcEEEEECCHH
Confidence 557799999974
No 60
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=42.86 E-value=7.3 Score=26.06 Aligned_cols=12 Identities=33% Similarity=0.974 Sum_probs=9.3
Q ss_pred CeeeeEEeCCcc
Q 036777 35 GKVGMYVCGVTA 46 (66)
Q Consensus 35 ~~v~~Y~CGPTv 46 (66)
....+|+|||..
T Consensus 262 ~~~~vyvCGp~~ 273 (311)
T 3lo8_A 262 GGAHIYFCGLKG 273 (311)
T ss_dssp TTCEEEEEECGG
T ss_pred CCcEEEEECCHH
Confidence 456799999964
No 61
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=42.07 E-value=8.2 Score=26.28 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=9.4
Q ss_pred CeeeeEEeCCcc
Q 036777 35 GKVGMYVCGVTA 46 (66)
Q Consensus 35 ~~v~~Y~CGPTv 46 (66)
....+|+|||..
T Consensus 277 ~~~~vyvCGP~~ 288 (316)
T 3jqq_A 277 YKCELYICGKKS 288 (316)
T ss_dssp TCCEEEEEECST
T ss_pred CCeEEEEeCCHH
Confidence 356899999963
No 62
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=41.97 E-value=2.7 Score=31.46 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=13.5
Q ss_pred CccCCCCCCCccceEEE
Q 036777 44 VTAYDLSHLGHARAAIS 60 (66)
Q Consensus 44 PTvYd~~HiGhaR~~V~ 60 (66)
|.+=.+.||||||+.++
T Consensus 31 PsPtG~LHiG~artAl~ 47 (512)
T 4gri_A 31 PSPTGLQHIGGIRTALF 47 (512)
T ss_dssp CCSSSCCBHHHHHHHHH
T ss_pred cCCCCcccHHHHHHHHH
Confidence 45667899999998764
No 63
>1vr7_A Adometdc, samdc, S-adenosylmethionine decarboxylase proenzyme; TM0655, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.156.1.2 PDB: 1tlu_A 1tmi_A 3iwc_A* 3iwb_A* 3iwd_A* 3iwc_B* 3iwb_B* 3iwd_B*
Probab=41.67 E-value=12 Score=23.93 Aligned_cols=10 Identities=20% Similarity=0.896 Sum_probs=8.6
Q ss_pred eeeeEEeCCc
Q 036777 36 KVGMYVCGVT 45 (66)
Q Consensus 36 ~v~~Y~CGPT 45 (66)
.|++|+||..
T Consensus 89 avDVftCg~~ 98 (142)
T 1vr7_A 89 AIDLFTCGED 98 (142)
T ss_dssp EEEEEEESTT
T ss_pred EEEEEccCCC
Confidence 4899999986
No 64
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=38.37 E-value=13 Score=25.16 Aligned_cols=12 Identities=33% Similarity=0.645 Sum_probs=9.6
Q ss_pred CeeeeEEeCCcc
Q 036777 35 GKVGMYVCGVTA 46 (66)
Q Consensus 35 ~~v~~Y~CGPTv 46 (66)
....+|+|||..
T Consensus 192 ~~~~vyvCGP~~ 203 (321)
T 2pia_A 192 PAQHVYCCGPQA 203 (321)
T ss_dssp TTEEEEEESCHH
T ss_pred CCCEEEEECCHH
Confidence 456799999974
No 65
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=37.45 E-value=12 Score=25.85 Aligned_cols=11 Identities=27% Similarity=0.869 Sum_probs=8.8
Q ss_pred eeeeEEeCCcc
Q 036777 36 KVGMYVCGVTA 46 (66)
Q Consensus 36 ~v~~Y~CGPTv 46 (66)
...+|+|||..
T Consensus 356 ~~~vyvCGp~~ 366 (396)
T 1gvh_A 356 TMQFYLCGPVG 366 (396)
T ss_dssp TCEEEEESCHH
T ss_pred CCEEEEeCCHH
Confidence 45799999974
No 66
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=36.80 E-value=11 Score=24.77 Aligned_cols=12 Identities=8% Similarity=0.263 Sum_probs=9.3
Q ss_pred CeeeeEEeCCcc
Q 036777 35 GKVGMYVCGVTA 46 (66)
Q Consensus 35 ~~v~~Y~CGPTv 46 (66)
+...+|+|||..
T Consensus 190 ~~~~vy~CGP~~ 201 (252)
T 2gpj_A 190 GEPAVWIACEFN 201 (252)
T ss_dssp SCEEEEEEEEHH
T ss_pred CCcEEEEEcCHH
Confidence 345799999975
No 67
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=36.39 E-value=13 Score=25.75 Aligned_cols=11 Identities=27% Similarity=0.830 Sum_probs=8.8
Q ss_pred eeeeEEeCCcc
Q 036777 36 KVGMYVCGVTA 46 (66)
Q Consensus 36 ~v~~Y~CGPTv 46 (66)
...+|+|||..
T Consensus 362 ~~~vyvCGp~~ 372 (403)
T 1cqx_A 362 DADYYICGPIP 372 (403)
T ss_dssp TCEEEEESSHH
T ss_pred CCEEEEeCCHH
Confidence 45789999974
No 68
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=34.98 E-value=13 Score=25.88 Aligned_cols=11 Identities=36% Similarity=0.860 Sum_probs=9.2
Q ss_pred eeeeEEeCCcc
Q 036777 36 KVGMYVCGVTA 46 (66)
Q Consensus 36 ~v~~Y~CGPTv 46 (66)
...+|+|||..
T Consensus 356 ~~~vyvCGp~~ 366 (399)
T 4g1v_A 356 HADVYTCGSLA 366 (399)
T ss_dssp SCEEEEEECHH
T ss_pred CCEEEEECCHH
Confidence 57899999964
No 69
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=33.18 E-value=14 Score=26.12 Aligned_cols=12 Identities=25% Similarity=0.814 Sum_probs=9.2
Q ss_pred CeeeeEEeCCcc
Q 036777 35 GKVGMYVCGVTA 46 (66)
Q Consensus 35 ~~v~~Y~CGPTv 46 (66)
....+|+|||..
T Consensus 353 ~~~~vyvCGP~~ 364 (402)
T 2b5o_A 353 PNTHVYMCGLKG 364 (402)
T ss_dssp TTEEEEEEECGG
T ss_pred CCcEEEEECCHH
Confidence 356799999964
No 70
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=32.83 E-value=14 Score=26.56 Aligned_cols=11 Identities=36% Similarity=0.670 Sum_probs=8.5
Q ss_pred CeeeeEEeCCc
Q 036777 35 GKVGMYVCGVT 45 (66)
Q Consensus 35 ~~v~~Y~CGPT 45 (66)
....+|+|||.
T Consensus 380 ~~~~vYvCGp~ 390 (435)
T 1f20_A 380 QGGHIYVCGDV 390 (435)
T ss_dssp SCCEEEEEECH
T ss_pred CCcEEEEeCCh
Confidence 34579999996
No 71
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=31.88 E-value=16 Score=23.79 Aligned_cols=11 Identities=36% Similarity=0.824 Sum_probs=8.5
Q ss_pred eeeeEEeCCcc
Q 036777 36 KVGMYVCGVTA 46 (66)
Q Consensus 36 ~v~~Y~CGPTv 46 (66)
...+|+|||..
T Consensus 191 ~~~vyvCGp~~ 201 (262)
T 1ep3_B 191 VDALYTCGAPA 201 (262)
T ss_dssp CSEEEEESCHH
T ss_pred CCEEEEECCHH
Confidence 35799999963
No 72
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=31.08 E-value=12 Score=26.81 Aligned_cols=10 Identities=30% Similarity=0.806 Sum_probs=8.1
Q ss_pred eeeeEEeCCc
Q 036777 36 KVGMYVCGVT 45 (66)
Q Consensus 36 ~v~~Y~CGPT 45 (66)
...+|+|||.
T Consensus 338 ~~~vYvCGp~ 347 (393)
T 4dql_A 338 GAHFYICGDG 347 (393)
T ss_dssp TCEEEEEEET
T ss_pred CcEEEEECCc
Confidence 4679999984
No 73
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=30.16 E-value=56 Score=19.99 Aligned_cols=21 Identities=10% Similarity=0.112 Sum_probs=15.4
Q ss_pred ccCCCcceEEEeCCCCceEEe
Q 036777 9 AAAPKMDLIIYNSMTQQKELF 29 (66)
Q Consensus 9 ~~~~~~~l~lyntltr~ke~f 29 (66)
|+|....++|||..|++....
T Consensus 40 Avg~D~tV~iWd~~tg~~~~~ 60 (318)
T 4ggc_A 40 AVALDNSVYLWSASSGDILQL 60 (318)
T ss_dssp EEEETTEEEEEETTTCCEEEE
T ss_pred EEEeCCEEEEEECCCCCEEEE
Confidence 455556799999999876543
No 74
>2iii_A S-adenosylmethionine decarboxylase proenzyme; two-layer alpha beta-sandwich, structural genomics, NPPSFA; 2.30A {Aquifex aeolicus}
Probab=28.11 E-value=24 Score=22.12 Aligned_cols=10 Identities=40% Similarity=0.943 Sum_probs=8.4
Q ss_pred eeeeEEeCCc
Q 036777 36 KVGMYVCGVT 45 (66)
Q Consensus 36 ~v~~Y~CGPT 45 (66)
.+++|+||..
T Consensus 78 avDvftCg~~ 87 (135)
T 2iii_A 78 TVDVYTCGDP 87 (135)
T ss_dssp EEEEEEESCH
T ss_pred EEEEEccCCC
Confidence 4899999974
No 75
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=26.97 E-value=15 Score=24.84 Aligned_cols=12 Identities=42% Similarity=1.085 Sum_probs=9.1
Q ss_pred CeeeeEEeCCcc
Q 036777 35 GKVGMYVCGVTA 46 (66)
Q Consensus 35 ~~v~~Y~CGPTv 46 (66)
+...+|+|||..
T Consensus 300 ~~~~vy~CGp~~ 311 (338)
T 1krh_A 300 GEVDVYLCGPVP 311 (338)
T ss_dssp GCSEEEEEEEHH
T ss_pred CCcEEEEECCHH
Confidence 345799999964
No 76
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=26.95 E-value=19 Score=25.46 Aligned_cols=10 Identities=40% Similarity=0.999 Sum_probs=7.8
Q ss_pred eeeeEEeC-Cc
Q 036777 36 KVGMYVCG-VT 45 (66)
Q Consensus 36 ~v~~Y~CG-PT 45 (66)
...+|+|| |.
T Consensus 321 ~~~vYvCG~p~ 331 (374)
T 1ddg_A 321 GAHIYVCGDAN 331 (374)
T ss_dssp TCEEEEEECTT
T ss_pred CcEEEEECCCH
Confidence 35699999 75
No 77
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=26.03 E-value=7.1 Score=29.38 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=13.4
Q ss_pred CccCCCCCCCccceEEE
Q 036777 44 VTAYDLSHLGHARAAIS 60 (66)
Q Consensus 44 PTvYd~~HiGhaR~~V~ 60 (66)
|.+=.+.||||+|+.++
T Consensus 13 PsPTG~LHiG~~rtAL~ 29 (498)
T 2ja2_A 13 PSPTGTPHVGLVRTALF 29 (498)
T ss_dssp CCSSSSCBHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHH
Confidence 56668899999998653
No 78
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=25.85 E-value=19 Score=26.94 Aligned_cols=10 Identities=40% Similarity=0.853 Sum_probs=8.0
Q ss_pred eeeeEEeCCc
Q 036777 36 KVGMYVCGVT 45 (66)
Q Consensus 36 ~v~~Y~CGPT 45 (66)
...+|+|||.
T Consensus 485 ~a~vYVCGp~ 494 (539)
T 2qtl_A 485 NGHIYVCGDA 494 (539)
T ss_dssp CCEEEEEESC
T ss_pred CcEEEEECCC
Confidence 3569999995
No 79
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=24.77 E-value=1.3e+02 Score=18.45 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=10.9
Q ss_pred CCCeeeeEEeCCccCCC
Q 036777 33 VPGKVGMYVCGVTAYDL 49 (66)
Q Consensus 33 ~~~~v~~Y~CGPTvYd~ 49 (66)
....+++.+|.| |+.
T Consensus 113 ~~~~ltLiTC~P--~~~ 127 (147)
T 2ln7_A 113 EEPILTLTTCYP--FDY 127 (147)
T ss_dssp SSCEEEEEEECC--SSS
T ss_pred CCcEEEEEeCCC--cCC
Confidence 445699999976 553
No 80
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=24.17 E-value=18 Score=26.58 Aligned_cols=9 Identities=44% Similarity=0.981 Sum_probs=7.4
Q ss_pred eeeeEEeCC
Q 036777 36 KVGMYVCGV 44 (66)
Q Consensus 36 ~v~~Y~CGP 44 (66)
...+|+|||
T Consensus 404 ~~~vYvCGp 412 (458)
T 3qfs_A 404 GAHIYVCGD 412 (458)
T ss_dssp TCEEEEEEE
T ss_pred CCEEEEECC
Confidence 357999998
No 81
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=23.95 E-value=47 Score=15.60 Aligned_cols=11 Identities=18% Similarity=0.244 Sum_probs=4.9
Q ss_pred CcccccccccC
Q 036777 1 METSKETTAAA 11 (66)
Q Consensus 1 ~~~~~~~~~~~ 11 (66)
|.+|-.+++..
T Consensus 1 mk~s~rrs~~r 11 (26)
T 1gff_3 1 MKKSIRRSGGK 11 (26)
T ss_pred CCcccccCCCC
Confidence 44444444433
No 82
>3rcc_A Sortase SRTA; sortase fold, beta-barrel, housekeeping sortase, surface Pro anchoring, PILI anchoring, PILI biogenesis; 3.10A {Streptococcus agalactiae serogroup V}
Probab=23.48 E-value=73 Score=19.92 Aligned_cols=21 Identities=10% Similarity=0.200 Sum_probs=14.1
Q ss_pred CCeeeeEEeCCccCCCCCCCccceEEEE
Q 036777 34 PGKVGMYVCGVTAYDLSHLGHARAAISF 61 (66)
Q Consensus 34 ~~~v~~Y~CGPTvYd~~HiGhaR~~V~~ 61 (66)
...+++.+|+| |+ +..++|++
T Consensus 120 ~~~ltLiTC~p--~~-----~~~RliV~ 140 (160)
T 3rcc_A 120 KSQLTLVTCTD--PE-----ATERIIVH 140 (160)
T ss_dssp CCEEEEEECSC--TT-----TCCEEEEE
T ss_pred CCEEEEEeCCC--CC-----CCcEEEEE
Confidence 45799999997 53 44455544
No 83
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=22.53 E-value=20 Score=27.07 Aligned_cols=9 Identities=44% Similarity=1.043 Sum_probs=7.3
Q ss_pred eeeEEeCCc
Q 036777 37 VGMYVCGVT 45 (66)
Q Consensus 37 v~~Y~CGPT 45 (66)
..+|+|||.
T Consensus 565 a~vYvCGp~ 573 (618)
T 3qe2_A 565 AHIYVCGDA 573 (618)
T ss_dssp CEEEEEEET
T ss_pred cEEEEECCc
Confidence 479999984
No 84
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=22.08 E-value=33 Score=21.92 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=9.0
Q ss_pred eeeEEeCCccCC
Q 036777 37 VGMYVCGVTAYD 48 (66)
Q Consensus 37 v~~Y~CGPTvYd 48 (66)
.++|.|||--..
T Consensus 3 mkIYlAGP~f~~ 14 (152)
T 4fyk_A 3 RSVYFCGSIRGG 14 (152)
T ss_dssp CEEEEECCSTTC
T ss_pred ceEEEECCCCCc
Confidence 478999997553
No 85
>3fn5_A Sortase A; sortase-fold, hydrolase; HET: EPE; 1.50A {Streptococcus pyogenes serotype M1} PDB: 3fn6_A 3fn7_A
Probab=21.70 E-value=99 Score=20.04 Aligned_cols=11 Identities=18% Similarity=0.283 Sum_probs=9.3
Q ss_pred CCeeeeEEeCC
Q 036777 34 PGKVGMYVCGV 44 (66)
Q Consensus 34 ~~~v~~Y~CGP 44 (66)
...+++.+|+|
T Consensus 138 ~~~LTLiTC~p 148 (187)
T 3fn5_A 138 LKEVTLVTCTD 148 (187)
T ss_dssp CCEEEEEEESS
T ss_pred CCEEEEEeCCC
Confidence 35799999997
No 86
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=21.33 E-value=26 Score=26.87 Aligned_cols=10 Identities=40% Similarity=0.770 Sum_probs=8.2
Q ss_pred eeeeEEeCCc
Q 036777 36 KVGMYVCGVT 45 (66)
Q Consensus 36 ~v~~Y~CGPT 45 (66)
...+|+|||.
T Consensus 602 ~~~vYvCGp~ 611 (688)
T 1tll_A 602 GGHIYVCGDV 611 (688)
T ss_dssp CCEEEEEEEH
T ss_pred CcEEEEeCCH
Confidence 4579999996
No 87
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=20.93 E-value=30 Score=26.50 Aligned_cols=9 Identities=44% Similarity=0.840 Sum_probs=7.5
Q ss_pred eeeeEEeCC
Q 036777 36 KVGMYVCGV 44 (66)
Q Consensus 36 ~v~~Y~CGP 44 (66)
...+|+|||
T Consensus 629 ~~~vYvCGp 637 (682)
T 2bpo_A 629 GAFIYVCGD 637 (682)
T ss_dssp TCEEEEEEC
T ss_pred CcEEEEeCC
Confidence 356999999
No 88
>1t1j_A Hypothetical protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.14.2
Probab=20.90 E-value=37 Score=21.05 Aligned_cols=10 Identities=0% Similarity=0.069 Sum_probs=7.9
Q ss_pred eeEEeCCccC
Q 036777 38 GMYVCGVTAY 47 (66)
Q Consensus 38 ~~Y~CGPTvY 47 (66)
.+|.|||=--
T Consensus 10 ~IYIagPysg 19 (125)
T 1t1j_A 10 KIFLACPYSH 19 (125)
T ss_dssp EEEEECCCCC
T ss_pred heeEECCCCC
Confidence 5899999663
No 89
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.02 E-value=49 Score=23.22 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=11.6
Q ss_pred CeeeeEEeCCccCC
Q 036777 35 GKVGMYVCGVTAYD 48 (66)
Q Consensus 35 ~~v~~Y~CGPTvYd 48 (66)
.-|+||.-||.+..
T Consensus 88 ~iVGWY~tg~~~~~ 101 (338)
T 4b4t_U 88 KLIGWYHSGPKLRA 101 (338)
T ss_dssp EEEEEEECCSSCCS
T ss_pred CEEEEEecCCCCCc
Confidence 56999999998754
Done!