RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 036777
(66 letters)
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 102 bits (257), Expect = 4e-28
Identities = 27/52 (51%), Positives = 38/52 (73%)
Query: 14 MDLIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYILY 65
M + I+NS+T+QKE+F PI GKV +YVCG+T YD H+GH R+ I F ++
Sbjct: 3 MSVKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVV 54
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 98.8 bits (247), Expect = 1e-26
Identities = 27/46 (58%), Positives = 36/46 (78%)
Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF 61
L I+N++T+QKE F PI G+VGMYVCG+T YDL H+GH R ++F
Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAF 47
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia
burgdorferi}
Length = 501
Score = 98.5 bits (246), Expect = 2e-26
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 1 METSKETTAAAPKMDLIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAIS 60
M T + T M L +YN+ T+ T V +Y CG T Y+ +H+G+ R I
Sbjct: 9 MGTLEAQTQGPGSMILKLYNTRTKDFSELTNF--ENVKVYACGPTVYNYAHIGNFRTYIF 66
Query: 61 FYILY 65
+L
Sbjct: 67 GDLLI 71
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 86.9 bits (216), Expect = 2e-22
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 14 MDLIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISF 61
L +++S +Q TP MYVCG+T YD +HLGHA ++F
Sbjct: 19 PALRLFDSADRQVRPVTP--GPTATMYVCGITPYDATHLGHAATYLTF 64
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold,
phospholipid synthesis, phosphatidylcholine,
phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A
{Rattus norvegicus}
Length = 236
Score = 29.6 bits (66), Expect = 0.048
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 19 YNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARA 57
Y +T ++ V +Y G+ +DL H GHARA
Sbjct: 59 YVRVTMEEACRGTPCERPVRVYADGI--FDLFHSGHARA 95
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway,
CMP, CTP, phosphoethanolamine, cytidylyltra SGC,
structural genomics consortium; HET: C5P; 2.00A {Homo
sapiens}
Length = 341
Score = 27.4 bits (61), Expect = 0.28
Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 2/18 (11%)
Query: 40 YVCGVTAYDLSHLGHARA 57
+ G YD+ H GH+
Sbjct: 11 WCDGC--YDMVHYGHSNQ 26
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 26.1 bits (58), Expect = 0.78
Identities = 8/14 (57%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Query: 51 HLGHARAAI-SFYI 63
H+GHARAAI +
Sbjct: 110 HIGHARAAILNHEY 123
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 0.89
Identities = 9/39 (23%), Positives = 9/39 (23%), Gaps = 23/39 (58%)
Query: 19 YNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARA 57
YN QQ YV G RA
Sbjct: 1846 YNVENQQ--------------YVAA---------GDLRA 1861
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP;
2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Length = 129
Score = 24.7 bits (55), Expect = 1.7
Identities = 7/22 (31%), Positives = 9/22 (40%), Gaps = 3/22 (13%)
Query: 36 KVGMYVCGVTAYDLSHLGHARA 57
K G +DL H GH +
Sbjct: 2 KKV-ITYGT--FDLLHWGHIKL 20
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A
{Staphylococcus aureus}
Length = 132
Score = 24.8 bits (55), Expect = 1.9
Identities = 8/22 (36%), Positives = 8/22 (36%), Gaps = 3/22 (13%)
Query: 36 KVGMYVCGVTAYDLSHLGHARA 57
K G YDL H GH
Sbjct: 2 KRV-ITYGT--YDLLHYGHIEL 20
>3eb8_A Cysteine protease-like VIRA; beta sheet, alpha helix, hydrolase,
secreted, THIO protease, virulence; 2.40A {Shigella
flexneri}
Length = 358
Score = 23.9 bits (51), Expect = 4.2
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 6 ETTAAAPKMDLIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHA 55
+ A PK D I S + E+ + I+P + G+ + S+L HA
Sbjct: 280 KINAVVPKNDTAISASGGRAYEVSSSILPSHITCNGVGINKIETSYLVHA 329
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.132 0.381
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 952,352
Number of extensions: 41896
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 11
Length of query: 66
Length of database: 6,701,793
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,668,716
Effective search space: 164392764
Effective search space used: 164392764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)