RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 036777
         (66 letters)



>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
          {Escherichia coli [TaxId: 562]}
          Length = 315

 Score = 83.1 bits (204), Expect = 1e-21
 Identities = 27/50 (54%), Positives = 38/50 (76%)

Query: 16 LIIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYILY 65
          L I+N++T+QKE F PI  G+VGMYVCG+T YDL H+GH R  ++F ++ 
Sbjct: 2  LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVA 51


>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase
          {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
          Length = 317

 Score = 41.3 bits (95), Expect = 1e-06
 Identities = 7/40 (17%), Positives = 16/40 (40%)

Query: 26 KELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAISFYILY 65
           ++       +  +   G+T     H+G+ R   + YI+ 
Sbjct: 8  DKIIRERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVG 47


>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
          (MetRS) {Escherichia coli [TaxId: 562]}
          Length = 350

 Score = 24.9 bits (53), Expect = 0.91
 Identities = 6/21 (28%), Positives = 7/21 (33%)

Query: 45 TAYDLSHLGHARAAISFYILY 65
           A    HLGH    I   +  
Sbjct: 12 YANGSIHLGHMLEHIQADVWV 32


>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
          {Thermus thermophilus [TaxId: 274]}
          Length = 348

 Score = 24.6 bits (52), Expect = 1.1
 Identities = 6/14 (42%), Positives = 7/14 (50%)

Query: 51 HLGHARAAISFYIL 64
          HLGHA   +    L
Sbjct: 19 HLGHAYTTVVADFL 32


>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
          {Escherichia coli [TaxId: 562]}
          Length = 286

 Score = 24.4 bits (52), Expect = 1.1
 Identities = 4/9 (44%), Positives = 5/9 (55%)

Query: 51 HLGHARAAI 59
          H G   AA+
Sbjct: 16 HFGSLIAAL 24


>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
          {Escherichia coli [TaxId: 562]}
          Length = 331

 Score = 24.4 bits (52), Expect = 1.2
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 51 HLGHARAAI 59
          H+GHA++  
Sbjct: 33 HIGHAKSIC 41


>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
          {Thermus thermophilus [TaxId: 274]}
          Length = 305

 Score = 24.4 bits (52), Expect = 1.3
 Identities = 4/9 (44%), Positives = 6/9 (66%)

Query: 51 HLGHARAAI 59
          H+G A  A+
Sbjct: 15 HVGTAYIAL 23


>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase
          (ValRS) {Thermus thermophilus [TaxId: 274]}
          Length = 425

 Score = 23.0 bits (48), Expect = 4.0
 Identities = 5/14 (35%), Positives = 6/14 (42%)

Query: 51 HLGHARAAISFYIL 64
          H+GHA        L
Sbjct: 50 HMGHALDNSLQDAL 63


>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus
          horikoshii [TaxId: 53953]}
          Length = 227

 Score = 22.4 bits (47), Expect = 5.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 31 PIVPGKVGMYVCGVTAYDLSHL 52
          PI PGK  +Y+   +    SH+
Sbjct: 70 PIKPGKSVLYLGIASGTTASHV 91


>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 348

 Score = 22.2 bits (46), Expect = 7.8
 Identities = 6/15 (40%), Positives = 7/15 (46%)

Query: 51 HLGHARAAISFYILY 65
          H GH R+ I    L 
Sbjct: 24 HAGHLRSTIIGGFLA 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0413    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 223,392
Number of extensions: 7562
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 10
Length of query: 66
Length of database: 2,407,596
Length adjustment: 35
Effective length of query: 31
Effective length of database: 1,927,046
Effective search space: 59738426
Effective search space used: 59738426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)