BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036779
         (440 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2NXF|A Chain A, Crystal Structure Of A Dimetal Phosphatase From Danio
           Rerio Loc 393393
          Length = 322

 Score = 32.0 bits (71), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 10  RAAVKLQKVYRGYRTRRRLADSAV--VAEELWWRAIDFARLSHSTVSFFNFSKPESVASR 67
           +  V+L  +  G+  RR  +D A+  V  EL   ++D   +      F+NFS+P  ++SR
Sbjct: 53  QCVVQLGDIIDGHNRRRDASDRALDTVXAELDACSVDVHHVW-GNHEFYNFSRPSLLSSR 111

Query: 68  WNRVTLNASKVGKGLSKD 85
            N      +  G  L  D
Sbjct: 112 LNSAQRTGTDTGSDLIGD 129


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,339,441
Number of Sequences: 62578
Number of extensions: 635239
Number of successful extensions: 1355
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1354
Number of HSP's gapped (non-prelim): 3
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)