BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036779
         (440 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6PIF6|MYO7B_HUMAN Unconventional myosin-VIIb OS=Homo sapiens GN=MYO7B PE=2 SV=2
          Length = 2116

 Score = 33.9 bits (76), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 10  RAAVKLQKVYRGYRTRRRLADS--AVVAEELWWR 41
           RAA+ +QKV RGYR R+       A V  + WWR
Sbjct: 765 RAALSIQKVLRGYRYRKEFLRQRRAAVTLQAWWR 798


>sp|Q6AE59|MURE_LEIXX UDP-N-acetylmuramyl-tripeptide synthetase OS=Leifsonia xyli subsp.
           xyli (strain CTCB07) GN=murE PE=3 SV=1
          Length = 514

 Score = 32.3 bits (72), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 13/77 (16%)

Query: 194 TSTSKKLYAGVKKKGIFHHSSFLAGGATIAAGRLVAEHGVLKTISAYSGHYRPTEDRLHS 253
           TS    LYA + + GI         G T  A R + EH +  T++       P    LH+
Sbjct: 134 TSVVYLLYAILGQLGIV-------AGLTSTAERRIGEHAITSTLTT------PEATELHA 180

Query: 254 FLSFLKENGVNMDEVEV 270
            L+ ++E GV    +EV
Sbjct: 181 LLARMREEGVRAAAIEV 197


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.132    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,033,609
Number of Sequences: 539616
Number of extensions: 7932858
Number of successful extensions: 19057
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 19037
Number of HSP's gapped (non-prelim): 48
length of query: 440
length of database: 191,569,459
effective HSP length: 121
effective length of query: 319
effective length of database: 126,275,923
effective search space: 40282019437
effective search space used: 40282019437
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)