Query 036779
Match_columns 440
No_of_seqs 161 out of 186
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 05:24:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00612 IQ: IQ calmodulin-bin 95.9 0.0055 1.2E-07 38.8 1.9 19 10-28 2-20 (21)
2 smart00015 IQ Short calmodulin 94.8 0.02 4.4E-07 37.7 2.1 21 8-28 2-22 (26)
3 TIGR03300 assembly_YfgL outer 65.3 21 0.00045 35.4 7.0 50 188-237 320-376 (377)
4 PF13360 PQQ_2: PQQ-like domai 62.6 24 0.00052 31.8 6.3 76 169-244 11-98 (238)
5 PF02375 JmjN: jmjN domain; I 60.7 4.3 9.3E-05 29.3 0.9 17 244-260 3-19 (34)
6 PRK11138 outer membrane biogen 59.7 26 0.00057 35.3 6.6 51 188-238 335-392 (394)
7 PF08763 Ca_chan_IQ: Voltage g 56.7 8.1 0.00018 28.4 1.8 20 9-28 9-28 (35)
8 cd02885 IPP_Isomerase Isopente 56.5 37 0.0008 30.5 6.4 77 174-270 6-95 (165)
9 PRK11138 outer membrane biogen 52.4 41 0.0009 33.9 6.7 56 188-243 294-356 (394)
10 KOG0377 Protein serine/threoni 50.2 9.3 0.0002 41.8 1.8 22 9-30 17-38 (631)
11 TIGR03300 assembly_YfgL outer 47.5 58 0.0013 32.3 6.8 56 188-243 279-341 (377)
12 PF13344 Hydrolase_6: Haloacid 46.7 8.5 0.00018 32.5 0.7 63 192-270 1-63 (101)
13 smart00545 JmjN Small domain f 40.7 18 0.00039 27.2 1.5 30 244-273 5-37 (42)
14 smart00701 PGRP Animal peptido 39.7 86 0.0019 28.4 6.1 56 190-259 65-122 (142)
15 TIGR02150 IPP_isom_1 isopenten 38.4 1.8E+02 0.0038 26.2 7.8 60 188-269 29-89 (158)
16 PF13360 PQQ_2: PQQ-like domai 38.2 1E+02 0.0022 27.8 6.2 75 169-243 54-143 (238)
17 COG4632 EpsL Exopolysaccharide 36.7 44 0.00096 34.7 4.0 63 165-233 156-220 (320)
18 KOG4427 E3 ubiquitin protein l 35.1 19 0.00042 41.7 1.4 23 8-30 29-51 (1096)
19 KOG0942 E3 ubiquitin protein l 34.4 18 0.00039 42.3 1.1 22 8-29 28-49 (1001)
20 PRK03759 isopentenyl-diphospha 33.8 1.8E+02 0.0038 26.8 7.2 61 188-268 36-97 (184)
21 cd00148 PROF Profilin binds ac 33.7 43 0.00093 29.6 3.1 57 214-273 9-72 (127)
22 cd04970 Ig6_Contactin_like Six 32.2 98 0.0021 24.3 4.6 59 172-230 18-82 (85)
23 PF00235 Profilin: Profilin; 31.2 20 0.00043 30.6 0.5 56 214-273 9-71 (121)
24 COG2335 Secreted and surface p 31.0 93 0.002 30.4 5.0 61 163-239 115-177 (187)
25 PF10161 DDDD: Putative mitoch 30.8 53 0.0012 28.1 3.0 29 235-263 19-69 (79)
26 PRK14464 ribosomal RNA large s 29.5 74 0.0016 33.2 4.4 33 239-274 283-315 (344)
27 PF15537 Toxin_59: Putative to 29.3 43 0.00093 30.8 2.3 57 188-245 50-115 (125)
28 PF15638 Tox-MPTase2: Metallop 26.9 1.7E+02 0.0037 28.8 6.1 86 169-261 5-114 (194)
29 PF13128 DUF3954: Protein of u 26.6 66 0.0014 25.4 2.6 20 224-243 10-30 (50)
30 PF01453 B_lectin: D-mannose b 23.8 2.7E+02 0.0059 24.0 6.3 64 162-226 19-90 (114)
31 cd04904 ACT_AAAH ACT domain of 22.8 77 0.0017 25.2 2.5 27 245-273 10-36 (74)
32 PF10411 DsbC_N: Disulfide bon 22.2 1.2E+02 0.0026 23.5 3.4 13 163-175 25-37 (57)
33 PRK10477 outer membrane lipopr 21.8 2.2E+02 0.0047 26.3 5.6 39 234-272 135-173 (177)
34 COG4337 Uncharacterized protei 21.1 1.6E+02 0.0034 28.8 4.5 23 188-216 180-202 (206)
35 cd04678 Nudix_Hydrolase_19 Mem 20.8 3.4E+02 0.0075 22.6 6.2 63 188-273 4-67 (129)
36 cd05853 Ig6_Contactin-4 Sixth 20.8 1.9E+02 0.004 24.0 4.4 58 172-230 18-82 (85)
No 1
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=95.89 E-value=0.0055 Score=38.76 Aligned_cols=19 Identities=42% Similarity=0.819 Sum_probs=17.6
Q ss_pred HHHHHHHHhhhhhhhhhhc
Q 036779 10 RAAVKLQKVYRGYRTRRRL 28 (440)
Q Consensus 10 ~AA~~iQK~YRgyRtRR~L 28 (440)
.||++||+.||||..|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6999999999999999875
No 2
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.84 E-value=0.02 Score=37.71 Aligned_cols=21 Identities=43% Similarity=0.763 Sum_probs=19.0
Q ss_pred hhHHHHHHHHhhhhhhhhhhc
Q 036779 8 ESRAAVKLQKVYRGYRTRRRL 28 (440)
Q Consensus 8 ~~~AA~~iQK~YRgyRtRR~L 28 (440)
...||++||+.||||..|++.
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 357999999999999999986
No 3
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=65.26 E-value=21 Score=35.38 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=30.9
Q ss_pred CEEEEEEeCCCceEEeeccCCcccc-----ccCCCCCcccceeeEEEe--cceeEEe
Q 036779 188 GKYIFVTSTSKKLYAGVKKKGIFHH-----SSFLAGGATIAAGRLVAE--HGVLKTI 237 (440)
Q Consensus 188 ~kwIFVmdtsg~LYVG~KkkG~FqH-----SSFLaGg~V~AAG~I~V~--nG~Ik~I 237 (440)
+..+||.+.+|.||+-...+|.+.- .+-....++++-|.|.|- ||.|..+
T Consensus 320 g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 4477888888888887766666653 222333455555666553 6777654
No 4
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=62.60 E-value=24 Score=31.82 Aligned_cols=76 Identities=24% Similarity=0.326 Sum_probs=50.4
Q ss_pred eCCEEEecc-----CCCeee-cCCCCEEEEEEeCCCceEEeeccCCccccccCCC----CCcccceeeEEEe--cceeEE
Q 036779 169 VDGRIIHKK-----TGDFLD-TQHGGKYIFVTSTSKKLYAGVKKKGIFHHSSFLA----GGATIAAGRLVAE--HGVLKT 236 (440)
Q Consensus 169 ~dGrL~~k~-----sG~lvd-Tt~~~kwIFVmdtsg~LYVG~KkkG~FqHSSFLa----Gg~V~AAG~I~V~--nG~Ik~ 236 (440)
.+|+.+|.. .+..+. +...+..+||.+.++.||+=..+.|....+.=+. +.++...|+|.|- +|.|..
T Consensus 11 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~ 90 (238)
T PF13360_consen 11 RTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYA 90 (238)
T ss_dssp TTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEE
T ss_pred CCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEe
Confidence 378888865 233332 2223667899999999998887666655433332 2245666777654 688999
Q ss_pred ecCCCCCC
Q 036779 237 ISAYSGHY 244 (440)
Q Consensus 237 Isp~SGHY 244 (440)
|...+|+-
T Consensus 91 ~d~~tG~~ 98 (238)
T PF13360_consen 91 LDAKTGKV 98 (238)
T ss_dssp EETTTSCE
T ss_pred cccCCcce
Confidence 99899986
No 5
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=60.68 E-value=4.3 Score=29.26 Aligned_cols=17 Identities=12% Similarity=0.489 Sum_probs=11.6
Q ss_pred CCCCHHHHHHHHHHHHH
Q 036779 244 YRPTEDRLHSFLSFLKE 260 (440)
Q Consensus 244 YRPt~enf~~Fi~~L~e 260 (440)
|+||.++|.+|++|++.
T Consensus 3 f~Pt~eEF~dp~~yi~~ 19 (34)
T PF02375_consen 3 FYPTMEEFKDPIKYISS 19 (34)
T ss_dssp E---HHHHS-HHHHHHH
T ss_pred ccCCHHHHhCHHHHHHH
Confidence 68999999999999886
No 6
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=59.74 E-value=26 Score=35.34 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=35.0
Q ss_pred CEEEEEEeCCCceEEeeccCCccccccCC-----CCCcccceeeEEEe--cceeEEec
Q 036779 188 GKYIFVTSTSKKLYAGVKKKGIFHHSSFL-----AGGATIAAGRLVAE--HGVLKTIS 238 (440)
Q Consensus 188 ~kwIFVmdtsg~LYVG~KkkG~FqHSSFL-----aGg~V~AAG~I~V~--nG~Ik~Is 238 (440)
+-.+||.+.+|.||+=....|.+--+.-+ ...+++.-|+|.|- +|.|..|.
T Consensus 335 ~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 335 NGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEe
Confidence 45789999999999766566665433322 23567777888774 78888775
No 7
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=56.67 E-value=8.1 Score=28.41 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=17.5
Q ss_pred hHHHHHHHHhhhhhhhhhhc
Q 036779 9 SRAAVKLQKVYRGYRTRRRL 28 (440)
Q Consensus 9 ~~AA~~iQK~YRgyRtRR~L 28 (440)
-=||..||..||.|+.||+-
T Consensus 9 ~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 9 FYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999863
No 8
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=56.47 E-value=37 Score=30.50 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=49.2
Q ss_pred EeccCCCeeecCCC------------CEEEEEEeCCCceEEeeccCCccccccCCCCCcccceeeEEEecceeEEecCCC
Q 036779 174 IHKKTGDFLDTQHG------------GKYIFVTSTSKKLYAGVKKKGIFHHSSFLAGGATIAAGRLVAEHGVLKTISAYS 241 (440)
Q Consensus 174 ~~k~sG~lvdTt~~------------~kwIFVmdtsg~LYVG~KkkG~FqHSSFLaGg~V~AAG~I~V~nG~Ik~Isp~S 241 (440)
+++++|+++.+... ...++|.+.+|++++.+...+...+ .|.... +-+
T Consensus 6 ~~d~~~~~~g~~~r~~~~~~~~~~~~~v~v~i~~~~~~iLl~kR~~~~~~~----Pg~w~~----------------~~g 65 (165)
T cd02885 6 LVDEDDNPIGTAEKLEAHLKGTLLHRAFSVFLFNSKGRLLLQRRALSKYTF----PGLWTN----------------TCC 65 (165)
T ss_pred EECCCCCCccccCHHHHhhcCCcceeEEEEEEEcCCCcEEEEeccCCCccC----CCcccc----------------ccc
Confidence 45666666554421 3358899999999998654322211 121111 125
Q ss_pred CCCCCCHHHHHHHHHHHHH-cCCCCCceEE
Q 036779 242 GHYRPTEDRLHSFLSFLKE-NGVNMDEVEV 270 (440)
Q Consensus 242 GHYRPt~enf~~Fi~~L~e-~GVDLs~V~v 270 (440)
||-.|.+.-....++.++| -|+..+.+.+
T Consensus 66 G~ie~GEt~~eaa~REl~EEtGl~~~~~~~ 95 (165)
T cd02885 66 SHPLPGEGVKDAAQRRLREELGITGDLLEL 95 (165)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCccchhh
Confidence 8888998888899998886 6998765554
No 9
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=52.35 E-value=41 Score=33.91 Aligned_cols=56 Identities=25% Similarity=0.394 Sum_probs=40.0
Q ss_pred CEEEEEEeCCCceEEeeccCCccc--cccC---CCCCcccceeeEEEe--cceeEEecCCCCC
Q 036779 188 GKYIFVTSTSKKLYAGVKKKGIFH--HSSF---LAGGATIAAGRLVAE--HGVLKTISAYSGH 243 (440)
Q Consensus 188 ~kwIFVmdtsg~LYVG~KkkG~Fq--HSSF---LaGg~V~AAG~I~V~--nG~Ik~Isp~SGH 243 (440)
+..|||.+.+|.||+=..+.|... ...+ ....++++-|.|.+- +|.|..|++.+|.
T Consensus 294 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 294 GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCC
Confidence 558999999999998877666543 1111 124567777888774 7899999888875
No 10
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=50.17 E-value=9.3 Score=41.79 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.2
Q ss_pred hHHHHHHHHhhhhhhhhhhccC
Q 036779 9 SRAAVKLQKVYRGYRTRRRLAD 30 (440)
Q Consensus 9 ~~AA~~iQK~YRgyRtRR~Lad 30 (440)
-+||..|||-||+|-+|+++.-
T Consensus 17 ikaAilIQkWYRr~~ARle~rr 38 (631)
T KOG0377|consen 17 IKAAILIQKWYRRYEARLEARR 38 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999988753
No 11
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=47.54 E-value=58 Score=32.29 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=37.8
Q ss_pred CEEEEEEeCCCceEEeeccCCccccc--cCC---CCCcccceeeEEE--ecceeEEecCCCCC
Q 036779 188 GKYIFVTSTSKKLYAGVKKKGIFHHS--SFL---AGGATIAAGRLVA--EHGVLKTISAYSGH 243 (440)
Q Consensus 188 ~kwIFVmdtsg~LYVG~KkkG~FqHS--SFL---aGg~V~AAG~I~V--~nG~Ik~Isp~SGH 243 (440)
+..|||.+.+|.||+=....|....+ .+- ...++++.|.|.+ .+|.|..++..+|-
T Consensus 279 ~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 279 DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCC
Confidence 55789999999999987776755422 221 2344556666666 37888888877664
No 12
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=46.70 E-value=8.5 Score=32.50 Aligned_cols=63 Identities=24% Similarity=0.295 Sum_probs=41.4
Q ss_pred EEEeCCCceEEeeccCCccccccCCCCCcccceeeEEEecceeEEecCCCCCCCCCHHHHHHHHHHHHHcCCCCCceEE
Q 036779 192 FVTSTSKKLYAGVKKKGIFHHSSFLAGGATIAAGRLVAEHGVLKTISAYSGHYRPTEDRLHSFLSFLKENGVNMDEVEV 270 (440)
Q Consensus 192 FVmdtsg~LYVG~KkkG~FqHSSFLaGg~V~AAG~I~V~nG~Ik~Isp~SGHYRPt~enf~~Fi~~L~e~GVDLs~V~v 270 (440)
|++|.+|.||.|.+ .+-| ++-+--.|.-.+-.+..++|.|.. .-..+.+.|+..|++.+.=+|
T Consensus 1 ~l~D~dGvl~~g~~---------~ipg-a~e~l~~L~~~g~~~~~lTNns~~------s~~~~~~~L~~~Gi~~~~~~i 63 (101)
T PF13344_consen 1 FLFDLDGVLYNGNE---------PIPG-AVEALDALRERGKPVVFLTNNSSR------SREEYAKKLKKLGIPVDEDEI 63 (101)
T ss_dssp EEEESTTTSEETTE---------E-TT-HHHHHHHHHHTTSEEEEEES-SSS-------HHHHHHHHHHTTTT--GGGE
T ss_pred CEEeCccEeEeCCC---------cCcC-HHHHHHHHHHcCCCEEEEeCCCCC------CHHHHHHHHHhcCcCCCcCEE
Confidence 78999999998743 2323 344555555566789999999874 335677888999998654333
No 13
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=40.69 E-value=18 Score=27.18 Aligned_cols=30 Identities=13% Similarity=0.310 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHHHHH---cCCCCCceEEecC
Q 036779 244 YRPTEDRLHSFLSFLKE---NGVNMDEVEVEKA 273 (440)
Q Consensus 244 YRPt~enf~~Fi~~L~e---~GVDLs~V~v~~~ 273 (440)
|+||.++|..|+.|++. .|-..-=|+|.+.
T Consensus 5 f~Pt~eEF~Dp~~yi~~i~~~~~~yGi~KIvPP 37 (42)
T smart00545 5 FYPTMEEFKDPLAYISKIRPQAEKYGICKVVPP 37 (42)
T ss_pred EcCCHHHHHCHHHHHHHHHHHHhhCCEEEEECC
Confidence 79999999998888874 4666666777666
No 14
>smart00701 PGRP Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. The bacteriophage molecule, but not its moth homologue, has been shown to have N-acetylmuramoyl-L-alanine amidase activity. One member of this family, Tag7, is a cytokine.
Probab=39.70 E-value=86 Score=28.38 Aligned_cols=56 Identities=23% Similarity=0.287 Sum_probs=31.2
Q ss_pred EEEEEeCCCceEEeecc--CCccccccCCCCCcccceeeEEEecceeEEecCCCCCCCCCHHHHHHHHHHHH
Q 036779 190 YIFVTSTSKKLYAGVKK--KGIFHHSSFLAGGATIAAGRLVAEHGVLKTISAYSGHYRPTEDRLHSFLSFLK 259 (440)
Q Consensus 190 wIFVmdtsg~LYVG~Kk--kG~FqHSSFLaGg~V~AAG~I~V~nG~Ik~Isp~SGHYRPt~enf~~Fi~~L~ 259 (440)
+=|+++.+|++|.|..- .|. |.. | .-++.|.|. +-.....+.||.+.+......|.
T Consensus 65 YhflI~~dG~IyeGR~~~~~ga--h~~---g---~N~~sigI~------~iG~~~~~~pt~~q~~al~~Li~ 122 (142)
T smart00701 65 YNFLVGGDGKVYEGRGWNVVGA--HTG---G---YNDISLGIA------FIGNFTDKLPTDAALDAAQDLLA 122 (142)
T ss_pred CeEEEcCCCEEEECCCCCcccc--ccc---C---CCCCeEEEE------EEeCCCCCCCcHHHHHHHHHHHH
Confidence 56999999999999642 121 111 1 011222222 22223457999888776665554
No 15
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=38.37 E-value=1.8e+02 Score=26.17 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=37.3
Q ss_pred CEEEEEEeCCCceEEeeccCCccccccCCCCCcccceeeEEEecceeEEecCCCCCCCCCHHHHHHHHHHHH-HcCCCCC
Q 036779 188 GKYIFVTSTSKKLYAGVKKKGIFHHSSFLAGGATIAAGRLVAEHGVLKTISAYSGHYRPTEDRLHSFLSFLK-ENGVNMD 266 (440)
Q Consensus 188 ~kwIFVmdtsg~LYVG~KkkG~FqHSSFLaGg~V~AAG~I~V~nG~Ik~Isp~SGHYRPt~enf~~Fi~~L~-e~GVDLs 266 (440)
+..++|+|.+|++++.+...+.+. ..|..... -+||--+++ ....++.|+ |-|+++.
T Consensus 29 ~v~v~v~~~~g~vLl~kR~~~k~~----~PG~W~~~----------------~gG~v~~GE--~eaa~REl~EE~Gl~~~ 86 (158)
T TIGR02150 29 AFSVFLFNEEGQLLLQRRALSKIT----WPGVWTNS----------------CCSHPLPGE--LEAAIRRLREELGIPAD 86 (158)
T ss_pred EEEEEEEcCCCeEEEEeccCCCcC----CCCCcccc----------------ccCCCCccc--HHHHHHHHHHHHCCCcc
Confidence 667899999999999865432221 12222211 135555665 377777776 4799988
Q ss_pred ceE
Q 036779 267 EVE 269 (440)
Q Consensus 267 ~V~ 269 (440)
.+.
T Consensus 87 ~~~ 89 (158)
T TIGR02150 87 DVP 89 (158)
T ss_pred ccc
Confidence 775
No 16
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=38.19 E-value=1e+02 Score=27.83 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=40.6
Q ss_pred eCCEEEeccCC-CeeecC--CCCEEEEEEeCCCceEEeeccCCccccccCC---------CCCccccee-eEEE-e-cce
Q 036779 169 VDGRIIHKKTG-DFLDTQ--HGGKYIFVTSTSKKLYAGVKKKGIFHHSSFL---------AGGATIAAG-RLVA-E-HGV 233 (440)
Q Consensus 169 ~dGrL~~k~sG-~lvdTt--~~~kwIFVmdtsg~LYVG~KkkG~FqHSSFL---------aGg~V~AAG-~I~V-~-nG~ 233 (440)
.+|+++|..+- ..+... -.+..+||.+.++.||+=..+.|........ ........| .+.+ . +|.
T Consensus 54 ~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 133 (238)
T PF13360_consen 54 KTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK 133 (238)
T ss_dssp TTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE
T ss_pred CCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCc
Confidence 46777775542 111111 0144678888888888877677777665311 112222222 2333 2 677
Q ss_pred eEEecCCCCC
Q 036779 234 LKTISAYSGH 243 (440)
Q Consensus 234 Ik~Isp~SGH 243 (440)
|..|.+.+|.
T Consensus 134 l~~~d~~tG~ 143 (238)
T PF13360_consen 134 LVALDPKTGK 143 (238)
T ss_dssp EEEEETTTTE
T ss_pred EEEEecCCCc
Confidence 8777777764
No 17
>COG4632 EpsL Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase [Carbohydrate transport and metabolism]
Probab=36.67 E-value=44 Score=34.66 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=40.7
Q ss_pred eEEEeCCEEEeccCCCeeecCCCCEEEEEEeCCCceEEeeccCCccccccCCCC-Ccc-cceeeEEEecce
Q 036779 165 EYVVVDGRIIHKKTGDFLDTQHGGKYIFVTSTSKKLYAGVKKKGIFHHSSFLAG-GAT-IAAGRLVAEHGV 233 (440)
Q Consensus 165 eViI~dGrL~~k~sG~lvdTt~~~kwIFVmdtsg~LYVG~KkkG~FqHSSFLaG-g~V-~AAG~I~V~nG~ 233 (440)
-++|.||+|++.++..-+ |. .+-.|+++.+|+|-|+-.... -+-++.+ ..+ .+-|-+.|+||+
T Consensus 156 GfqisdGklvkp~dw~~~-t~--ae~~~aftkdG~lkVyg~~sp---a~ll~sngaeasf~fgp~LIkdgk 220 (320)
T COG4632 156 GFQISDGKLVKPYDWAGY-TG--AEACVAFTKDGTLKVYGRESP---ADLLISNGAEASFAFGPWLIKDGK 220 (320)
T ss_pred EEEEeCCeEeecCChhhh-cc--ccceEEEccCCcEEEcCCCCh---HHHHHhccceeeeeeccEEEecCC
Confidence 466788999987755543 22 445688888999999943111 1123333 333 678899999995
No 18
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.06 E-value=19 Score=41.69 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.5
Q ss_pred hhHHHHHHHHhhhhhhhhhhccC
Q 036779 8 ESRAAVKLQKVYRGYRTRRRLAD 30 (440)
Q Consensus 8 ~~~AA~~iQK~YRgyRtRR~Lad 30 (440)
..+||.+||++.|||=+|+.+++
T Consensus 29 r~~aa~~iq~~lrsyl~Rkk~~~ 51 (1096)
T KOG4427|consen 29 REAAALFIQRVLRSYLVRKKAQI 51 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999998764
No 19
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.36 E-value=18 Score=42.29 Aligned_cols=22 Identities=36% Similarity=0.709 Sum_probs=19.2
Q ss_pred hhHHHHHHHHhhhhhhhhhhcc
Q 036779 8 ESRAAVKLQKVYRGYRTRRRLA 29 (440)
Q Consensus 8 ~~~AA~~iQK~YRgyRtRR~La 29 (440)
+..+|++||+-.||||.|++-.
T Consensus 28 ~e~~av~vQs~~Rg~~~r~~~~ 49 (1001)
T KOG0942|consen 28 QEKNAVKVQSFWRGFRVRHNQK 49 (1001)
T ss_pred HhccchHHHHHHHHHHHHHHHH
Confidence 5679999999999999998753
No 20
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=33.81 E-value=1.8e+02 Score=26.82 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=39.0
Q ss_pred CEEEEEEeCCCceEEeeccCCccccccCCCCCcccceeeEEEecceeEEecCCCCCCCCCHHHHHHHHHHHHH-cCCCCC
Q 036779 188 GKYIFVTSTSKKLYAGVKKKGIFHHSSFLAGGATIAAGRLVAEHGVLKTISAYSGHYRPTEDRLHSFLSFLKE-NGVNMD 266 (440)
Q Consensus 188 ~kwIFVmdtsg~LYVG~KkkG~FqHSSFLaGg~V~AAG~I~V~nG~Ik~Isp~SGHYRPt~enf~~Fi~~L~e-~GVDLs 266 (440)
...++|++.+|++++.+...+.. +| -|.... +-.||-.|.+.-....++.|.| -|++..
T Consensus 36 av~v~i~~~~g~vLL~rR~~~~~---~~-PG~w~~----------------~~gG~ve~GEt~~~aa~REl~EEtGl~~~ 95 (184)
T PRK03759 36 AFSCYLFDADGRLLVTRRALSKK---TW-PGVWTN----------------SCCGHPQPGESLEDAVIRRCREELGVEIT 95 (184)
T ss_pred EEEEEEEcCCCeEEEEEccCCCC---CC-CCcccc----------------cccCCCCCCCCHHHHHHHHHHHHhCCCcc
Confidence 45678888888888876422211 11 121111 1249999998888888888875 799876
Q ss_pred ce
Q 036779 267 EV 268 (440)
Q Consensus 267 ~V 268 (440)
.+
T Consensus 96 ~~ 97 (184)
T PRK03759 96 DL 97 (184)
T ss_pred cc
Confidence 43
No 21
>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline. Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.
Probab=33.67 E-value=43 Score=29.59 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=45.6
Q ss_pred cCCCCCcccceeeEEEecceeEEecCCCCC-CCCCHHHHHHHHHHHHH------cCCCCCceEEecC
Q 036779 214 SFLAGGATIAAGRLVAEHGVLKTISAYSGH-YRPTEDRLHSFLSFLKE------NGVNMDEVEVEKA 273 (440)
Q Consensus 214 SFLaGg~V~AAG~I~V~nG~Ik~Isp~SGH-YRPt~enf~~Fi~~L~e------~GVDLs~V~v~~~ 273 (440)
++++.+.+..|..+..++|. +|..|.- +.++.+++..+++.+++ +|+-+..++..-.
T Consensus 9 ~L~~~g~~~~aAI~g~d~g~---vwA~s~~~f~~t~~E~~~i~~~f~d~~~~~~~Gi~l~G~KY~~l 72 (127)
T cd00148 9 NLLGTGKVDSAAIVGHDDGS---VWAASAGGFNLTPEEVGTLVAGFKDPDGVFSTGLTLGGQKYMVI 72 (127)
T ss_pred HHhhcCCcCEEEEEecCCCC---eEEecCCCCccCHHHHHHHHHHccCccccccCCEEECCeEEEEE
Confidence 46666678888888887686 5778888 99999999999997764 7777777777666
No 22
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=32.18 E-value=98 Score=24.28 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=39.6
Q ss_pred EEEeccCCCeeecCCC-CE--EEEEEeCCCceEEee---ccCCccccccCCCCCcccceeeEEEe
Q 036779 172 RIIHKKTGDFLDTQHG-GK--YIFVTSTSKKLYAGV---KKKGIFHHSSFLAGGATIAAGRLVAE 230 (440)
Q Consensus 172 rL~~k~sG~lvdTt~~-~k--wIFVmdtsg~LYVG~---KkkG~FqHSSFLaGg~V~AAG~I~V~ 230 (440)
.+.|.++|++++.... .. -+++...++.|.|-. ...|.+...-=...+.+.+...|.|.
T Consensus 18 ~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 82 (85)
T cd04970 18 TFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVR 82 (85)
T ss_pred EEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEE
Confidence 4578888888865432 21 345666778999886 46799887655555556677777665
No 23
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=31.21 E-value=20 Score=30.61 Aligned_cols=56 Identities=13% Similarity=0.218 Sum_probs=43.8
Q ss_pred cCCCCCcccceeeEEEecceeEEecCCCCCC-CCCHHHHHHHHHHHHH------cCCCCCceEEecC
Q 036779 214 SFLAGGATIAAGRLVAEHGVLKTISAYSGHY-RPTEDRLHSFLSFLKE------NGVNMDEVEVEKA 273 (440)
Q Consensus 214 SFLaGg~V~AAG~I~V~nG~Ik~Isp~SGHY-RPt~enf~~Fi~~L~e------~GVDLs~V~v~~~ 273 (440)
.|++-+.+..|+.+- .||. +|..|+.+ .++++++..+++.|++ .|+.+..++-.-.
T Consensus 9 ~L~~~~~~~~aaI~~-~dG~---vwA~s~~f~~~~~~E~~~i~~~f~~~~~~~~~gi~l~G~kY~~~ 71 (121)
T PF00235_consen 9 QLIGTGNITKAAIIG-SDGS---VWASSPGFSNISPEEAKAIIKAFNNPSKFPSNGITLGGKKYIVL 71 (121)
T ss_dssp HHHTTSSESEEEEEE-TTSS---EEEEETTGGGCSHHHHHHHHHHHHSSSHHHHH-EEETTEEEEEE
T ss_pred HhcccCcEeEEEEEc-CCCC---EEEecCCCCCCCHHHHHHHHHHhcCchhcccCCeEEcCcEeEEE
Confidence 345556688888888 9994 66677779 9999999999998776 5888888887666
No 24
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=31.03 E-value=93 Score=30.36 Aligned_cols=61 Identities=23% Similarity=0.378 Sum_probs=41.4
Q ss_pred ceeEEEeCCEEEeccCC--CeeecCCCCEEEEEEeCCCceEEeeccCCccccccCCCCCcccceeeEEEecceeEEecC
Q 036779 163 HYEYVVVDGRIIHKKTG--DFLDTQHGGKYIFVTSTSKKLYAGVKKKGIFHHSSFLAGGATIAAGRLVAEHGVLKTISA 239 (440)
Q Consensus 163 ~YeViI~dGrL~~k~sG--~lvdTt~~~kwIFVmdtsg~LYVG~KkkG~FqHSSFLaGg~V~AAG~I~V~nG~Ik~Isp 239 (440)
--.++|.+|++.-.+.- .-+.|.+|...-+-++.+ ++||+ .+.....-|.+.||+|..|+.
T Consensus 115 iLtYHVv~Gk~~~~~l~~~~~v~t~~G~~~~i~~~~~-~~~Vn---------------~a~v~~~di~a~NgvIhvID~ 177 (187)
T COG2335 115 ILTYHVVEGKITAADLKSSGSVKTVQGADLKIKVTGG-GVYVN---------------DATVTIADINASNGVIHVIDK 177 (187)
T ss_pred eeEEEEEcCcccHHHhhccccceeecCceEEEEEcCC-cEEEe---------------eeEEEeccEeccCcEEEEEee
Confidence 34677889999754432 445677766665655554 49998 334455678889999999863
No 25
>PF10161 DDDD: Putative mitochondrial precursor protein; InterPro: IPR018782 This entry represents a family of small conserved proteins found from nematodes to humans. The C-terminal region is rich in asparagine. These proteins have been putatively designated as mitochondrial precursor proteins but this has not been confirmed.
Probab=30.76 E-value=53 Score=28.08 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=21.1
Q ss_pred EEecCCCCCCCCCHHHH----------------------HHHHHHHHHcCC
Q 036779 235 KTISAYSGHYRPTEDRL----------------------HSFLSFLKENGV 263 (440)
Q Consensus 235 k~Isp~SGHYRPt~enf----------------------~~Fi~~L~e~GV 263 (440)
..++..||+..|-++++ +++-.||+|+-+
T Consensus 19 s~~~~~sGAi~p~P~~~~fgl~~v~~vvip~l~~Ga~isk~~A~fLEe~di 69 (79)
T PF10161_consen 19 SVTTTRSGAILPKPEKMPFGLLRVLAVVIPGLYLGATISKNGAQFLEENDI 69 (79)
T ss_pred eeEeccCCccCCCCccccchhheeeeeeccHHHHHHHHHHHHHHHHHHhcc
Confidence 45667788887776653 567789999876
No 26
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.49 E-value=74 Score=33.22 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=29.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCceEEecCC
Q 036779 239 AYSGHYRPTEDRLHSFLSFLKENGVNMDEVEVEKAG 274 (440)
Q Consensus 239 p~SGHYRPt~enf~~Fi~~L~e~GVDLs~V~v~~~~ 274 (440)
+.+.|.+|+.+.+.+|.+.|+.+|| .|.|..+-
T Consensus 283 ~g~~~~rp~~~~i~~f~~~L~~~gi---~~tiR~~~ 315 (344)
T PRK14464 283 DGDAYRRPSGERIVAMARYLHRRGV---LTKVRNSA 315 (344)
T ss_pred CCCCccCCCHHHHHHHHHHHHHCCc---eEEEECCC
Confidence 3568999999999999999999999 77888773
No 27
>PF15537 Toxin_59: Putative toxin 59
Probab=29.25 E-value=43 Score=30.75 Aligned_cols=57 Identities=25% Similarity=0.477 Sum_probs=34.1
Q ss_pred CEEEEEEeCCCceE-Eeecc---CCccccccCCC----CCcccceeeEEE-ecceeEEecCCCCCCC
Q 036779 188 GKYIFVTSTSKKLY-AGVKK---KGIFHHSSFLA----GGATIAAGRLVA-EHGVLKTISAYSGHYR 245 (440)
Q Consensus 188 ~kwIFVmdtsg~LY-VG~Kk---kG~FqHSSFLa----Gg~V~AAG~I~V-~nG~Ik~Isp~SGHYR 245 (440)
+..-||.|...+.| +|..+ .+.-+|--++. -.+++--|+|.= -||.|. -.-+||||-
T Consensus 50 G~~eFVFDP~~~~Fa~G~~~~~~~~~~~H~~la~~iGA~~s~vvGGr~~R~~~G~l~-TnewSGHyg 115 (125)
T PF15537_consen 50 GSIEFVFDPKTNRFAVGSPRDYGIDVSGHDQLARAIGADESTVVGGRFSRGPNGELS-TNEWSGHYG 115 (125)
T ss_pred CCccEEEcCCcCeEeecCCcccccccchHHHHHHhcCCCCCeeEeeEEEecCCCCEe-ecccccccc
Confidence 44568888755544 44332 25555654443 345666677776 577653 356899994
No 28
>PF15638 Tox-MPTase2: Metallopeptidase toxin 2
Probab=26.85 E-value=1.7e+02 Score=28.79 Aligned_cols=86 Identities=20% Similarity=0.271 Sum_probs=52.0
Q ss_pred eCCEEEeccCCCeeecCCCCEEEEEEeCCCceEEee--------------------ccCCccccccCCC--CC-ccccee
Q 036779 169 VDGRIIHKKTGDFLDTQHGGKYIFVTSTSKKLYAGV--------------------KKKGIFHHSSFLA--GG-ATIAAG 225 (440)
Q Consensus 169 ~dGrL~~k~sG~lvdTt~~~kwIFVmdtsg~LYVG~--------------------KkkG~FqHSSFLa--Gg-~V~AAG 225 (440)
.+|++++..++ ....|||.+..|+.+... |..|.-+|.--.+ |. +.-.-|
T Consensus 5 ~~Gkfir~~~~-------~~~nIyI~~~~gnvl~s~y~~~~~~n~q~~ani~~hYAk~vgi~~~~~tvG~~g~~~~~~~~ 77 (194)
T PF15638_consen 5 GSGKFIRSVND-------KSPNIYIVTPKGNVLLSDYNFKIGRNLQIMANIVGHYAKAVGIKGGAGTVGTKGNIPTDTEA 77 (194)
T ss_pred CCCcEEEecCC-------CCccEEEEeCCCCEehhhccccccchHHHHHHHHHHHHHHhccccccccccccccCCCCccc
Confidence 35777764322 245799999998877443 2234433332222 11 122223
Q ss_pred eEEEe-cceeEEecCCCCCCCCCHHHHHHHHHHHHHc
Q 036779 226 RLVAE-HGVLKTISAYSGHYRPTEDRLHSFLSFLKEN 261 (440)
Q Consensus 226 ~I~V~-nG~Ik~Isp~SGHYRPt~enf~~Fi~~L~e~ 261 (440)
.+-+. +|.=-.++...||.-++..|.++|+..|.-.
T Consensus 78 ~~~a~t~g~~I~~~~~nG~~~~~l~NiYnl~stL~HE 114 (194)
T PF15638_consen 78 EYDAGTKGINIRPSVYNGHVDKSLDNIYNLMSTLFHE 114 (194)
T ss_pred ccccccCCceEEEEeecCccchhHHHHHHHHHHHHHH
Confidence 33333 4544457889999999999999999999744
No 29
>PF13128 DUF3954: Protein of unknown function (DUF3954)
Probab=26.55 E-value=66 Score=25.42 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=14.3
Q ss_pred eeeEEEecceeEEe-cCCCCC
Q 036779 224 AGRLVAEHGVLKTI-SAYSGH 243 (440)
Q Consensus 224 AG~I~V~nG~Ik~I-sp~SGH 243 (440)
-|..+|+||.|..| =|.|||
T Consensus 10 ngiYiV~~G~v~~i~pP~sGf 30 (50)
T PF13128_consen 10 NGIYIVKDGEVTFIEPPESGF 30 (50)
T ss_pred CeEEEEECCeEEEcCCCCCCc
Confidence 46677788888888 455665
No 30
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=23.84 E-value=2.7e+02 Score=24.00 Aligned_cols=64 Identities=19% Similarity=0.275 Sum_probs=38.7
Q ss_pred cceeEEE-eCCEE-EeccCCCeeecC---CC---CEEEEEEeCCCceEEeeccCCccccccCCCCCcccceee
Q 036779 162 EHYEYVV-VDGRI-IHKKTGDFLDTQ---HG---GKYIFVTSTSKKLYAGVKKKGIFHHSSFLAGGATIAAGR 226 (440)
Q Consensus 162 e~YeViI-~dGrL-~~k~sG~lvdTt---~~---~kwIFVmdtsg~LYVG~KkkG~FqHSSFLaGg~V~AAG~ 226 (440)
..|.+++ .||.| +|+.+|..+-.+ .+ .-..-+|..+|+|.+-.. .+..-=+||-....++..|+
T Consensus 19 ~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~-~~~~lW~Sf~~ptdt~L~~q 90 (114)
T PF01453_consen 19 GNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDS-SGNVLWQSFDYPTDTLLPGQ 90 (114)
T ss_dssp TTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEET-TSEEEEESTTSSS-EEEEEE
T ss_pred ccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEee-cceEEEeecCCCccEEEecc
Confidence 4588887 48877 455555555222 11 246667777899998874 45555566777666655554
No 31
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=22.75 E-value=77 Score=25.19 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCceEEecC
Q 036779 245 RPTEDRLHSFLSFLKENGVNMDEVEVEKA 273 (440)
Q Consensus 245 RPt~enf~~Fi~~L~e~GVDLs~V~v~~~ 273 (440)
+|+. +...++.|+++||+|++|+=.|+
T Consensus 10 ~pG~--L~~vL~~f~~~~iNlt~IeSRP~ 36 (74)
T cd04904 10 EVGA--LARALKLFEEFGVNLTHIESRPS 36 (74)
T ss_pred CCcH--HHHHHHHHHHCCCcEEEEECCCC
Confidence 5654 99999999999999999988888
No 32
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=22.19 E-value=1.2e+02 Score=23.48 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=8.3
Q ss_pred ceeEEEeCCEEEe
Q 036779 163 HYEYVVVDGRIIH 175 (440)
Q Consensus 163 ~YeViI~dGrL~~ 175 (440)
-|+|.+.+|.++|
T Consensus 25 lyeV~~~~~~i~Y 37 (57)
T PF10411_consen 25 LYEVVLKGGGILY 37 (57)
T ss_dssp EEEEEE-TTEEEE
T ss_pred eEEEEECCCeEEE
Confidence 5777776666665
No 33
>PRK10477 outer membrane lipoprotein Blc; Provisional
Probab=21.78 E-value=2.2e+02 Score=26.30 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=29.7
Q ss_pred eEEecCCCCCCCCCHHHHHHHHHHHHHcCCCCCceEEec
Q 036779 234 LKTISAYSGHYRPTEDRLHSFLSFLKENGVNMDEVEVEK 272 (440)
Q Consensus 234 Ik~Isp~SGHYRPt~enf~~Fi~~L~e~GVDLs~V~v~~ 272 (440)
-..+|=+|--=..+.+-...|+..++++|+|++++...+
T Consensus 135 ~~~~wIlsR~p~l~~~~~~~~~~~~~~~G~d~~~l~~~~ 173 (177)
T PRK10477 135 RDYLWILSRTPTISDEVKQQMLAVATREGFDVSKLIWVK 173 (177)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCHHHeEECC
Confidence 344455555555667889999999999999999987644
No 34
>COG4337 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.08 E-value=1.6e+02 Score=28.75 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.3
Q ss_pred CEEEEEEeCCCceEEeeccCCccccccCC
Q 036779 188 GKYIFVTSTSKKLYAGVKKKGIFHHSSFL 216 (440)
Q Consensus 188 ~kwIFVmdtsg~LYVG~KkkG~FqHSSFL 216 (440)
.+|.|--|..|.|-|- .||||+-
T Consensus 180 KtWaFkKdd~G~lRIv------~HHSSLP 202 (206)
T COG4337 180 KTWAFKKDDQGQLRIV------LHHSSLP 202 (206)
T ss_pred ceeeeeccCCCcEEEE------EecCCCC
Confidence 7899999999999775 4699985
No 35
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=20.82 E-value=3.4e+02 Score=22.62 Aligned_cols=63 Identities=22% Similarity=0.266 Sum_probs=41.1
Q ss_pred CEEEEEEeCCCceEEeeccCCccccccCCCCCcccceeeEEEecceeEEecCCCCCCCCCHHHHHHHHHHHH-HcCCCCC
Q 036779 188 GKYIFVTSTSKKLYAGVKKKGIFHHSSFLAGGATIAAGRLVAEHGVLKTISAYSGHYRPTEDRLHSFLSFLK-ENGVNMD 266 (440)
Q Consensus 188 ~kwIFVmdtsg~LYVG~KkkG~FqHSSFLaGg~V~AAG~I~V~nG~Ik~Isp~SGHYRPt~enf~~Fi~~L~-e~GVDLs 266 (440)
+..++|++.+|+|++.+..++. -.|....- -||=.|.+.-...+++.|+ |-|+++.
T Consensus 4 ~v~~ii~~~~~~iLl~~r~~~~------~~~~w~~P-----------------GG~ve~gEt~~~Aa~REl~EE~Gl~~~ 60 (129)
T cd04678 4 GVGVFVLNPKGKVLLGKRKGSH------GAGTWALP-----------------GGHLEFGESFEECAAREVLEETGLHIE 60 (129)
T ss_pred EEEEEEECCCCeEEEEeccCCC------CCCeEECC-----------------cccccCCCCHHHHHHHHHHHHhCCccc
Confidence 3468889998999999875431 11211111 1555777777778878777 5899988
Q ss_pred ceEEecC
Q 036779 267 EVEVEKA 273 (440)
Q Consensus 267 ~V~v~~~ 273 (440)
.+.....
T Consensus 61 ~~~~~~~ 67 (129)
T cd04678 61 NVQFLTV 67 (129)
T ss_pred ceEEEEE
Confidence 7766443
No 36
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=20.77 E-value=1.9e+02 Score=24.02 Aligned_cols=58 Identities=19% Similarity=0.211 Sum_probs=36.5
Q ss_pred EEEeccCCCeeecCCCCEEEEEE----eCCCceEEee---ccCCccccccCCCCCcccceeeEEEe
Q 036779 172 RIIHKKTGDFLDTQHGGKYIFVT----STSKKLYAGV---KKKGIFHHSSFLAGGATIAAGRLVAE 230 (440)
Q Consensus 172 rL~~k~sG~lvdTt~~~kwIFVm----dtsg~LYVG~---KkkG~FqHSSFLaGg~V~AAG~I~V~ 230 (440)
.+.|.++|++++....+. -|.+ +.++.|.|-. ...|.+...-=..=+.+.+...|.|.
T Consensus 18 ~~~W~~dg~~i~~~~~~~-~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~ 82 (85)
T cd05853 18 VFTWSFNGHLIDFQKDGD-HFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVR 82 (85)
T ss_pred EEEEEECCEECcccCCCc-cEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEe
Confidence 578999999997543232 2433 4568898885 35677666554445556666666654
Done!