Query 036779
Match_columns 440
No_of_seqs 161 out of 186
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 08:40:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l53_B CAM, voltage-gated sodi 96.3 0.0021 7.2E-08 44.5 2.4 24 7-30 4-27 (31)
2 2kxw_B Sodium channel protein 96.2 0.0024 8.4E-08 42.8 2.3 22 7-28 4-25 (27)
3 1n2d_C IQ2 and IQ3 motifs from 92.6 0.054 1.9E-06 38.7 2.2 19 9-27 28-46 (48)
4 2ix7_C Myosin-5A; contractIle 92.0 0.067 2.3E-06 39.7 2.0 35 8-42 4-40 (58)
5 2ix7_C Myosin-5A; contractIle 84.1 0.43 1.5E-05 35.3 1.8 23 8-30 27-49 (58)
6 1n2d_C IQ2 and IQ3 motifs from 81.9 0.59 2E-05 33.2 1.7 22 9-30 3-24 (48)
7 3dve_B Voltage-dependent N-typ 61.1 2.8 9.5E-05 27.3 1.0 17 10-26 6-22 (23)
8 3ohg_A Uncharacterized protein 59.5 12 0.00042 36.4 5.6 65 161-234 109-173 (285)
9 3bxl_B CAM, voltage-dependent 55.6 5.5 0.00019 26.6 1.7 18 10-27 3-20 (26)
10 3dvk_B Voltage-dependent R-typ 54.8 5.4 0.00018 26.0 1.5 19 8-26 5-23 (23)
11 2dfs_A Myosin-5A; myosin-V, in 49.3 6.8 0.00023 44.3 2.3 19 10-28 792-810 (1080)
12 3q7m_A Lipoprotein YFGL, BAMB; 41.9 35 0.0012 31.2 5.5 57 188-244 277-340 (376)
13 2dfs_A Myosin-5A; myosin-V, in 34.8 22 0.00076 40.3 3.4 19 10-28 840-858 (1080)
14 3gn4_A Myosin-VI; unconvention 34.4 18 0.00062 32.6 2.2 21 8-28 44-64 (148)
15 3q7m_A Lipoprotein YFGL, BAMB; 34.1 54 0.0018 30.0 5.4 51 188-238 318-375 (376)
16 1kk8_A Myosin heavy chain, str 33.9 16 0.00055 40.4 2.1 34 8-41 778-816 (837)
17 2be1_A Serine/threonine-protei 32.9 43 0.0015 32.9 4.8 75 169-243 28-132 (339)
18 3g43_E Voltage-dependent L-typ 30.3 19 0.00064 29.7 1.4 18 10-27 64-81 (81)
19 2bl0_A Major plasmodial myosin 30.0 28 0.00096 26.0 2.3 20 8-27 29-48 (63)
20 1f8p_A Neuropeptide Y (PNPY); 27.7 26 0.00088 25.1 1.6 28 79-107 9-37 (37)
21 3sao_A Extracellular fatty aci 27.3 2.3E+02 0.0078 23.7 7.8 38 236-273 110-147 (160)
22 1wdc_A Scallop myosin; calcium 26.0 37 0.0013 25.4 2.3 20 8-27 31-50 (64)
23 2l60_A Peptide YY; GPCR ligand 25.8 47 0.0016 24.3 2.7 28 79-107 13-41 (41)
24 3no2_A Uncharacterized protein 23.7 1.1E+02 0.0039 27.6 5.6 14 370-383 255-268 (276)
25 1yiq_A Quinohemoprotein alcoho 22.4 1.5E+02 0.0051 31.0 6.8 56 188-243 121-194 (689)
26 3kff_A MUP 4, major urinary pr 21.3 3.4E+02 0.012 22.6 7.8 36 238-273 118-153 (162)
27 2l5p_A Lipocalin 12; beta barr 20.6 1.6E+02 0.0054 25.3 5.6 37 237-273 130-166 (184)
28 2vnl_A Bifunctional tail prote 20.5 29 0.00099 31.5 0.9 23 220-243 65-87 (151)
No 1
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=96.27 E-value=0.0021 Score=44.48 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHhhhhhhhhhhccC
Q 036779 7 SESRAAVKLQKVYRGYRTRRRLAD 30 (440)
Q Consensus 7 ~~~~AA~~iQK~YRgyRtRR~Lad 30 (440)
.++.||++||+.||+|+.||.+..
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~~~~ 27 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRSLKH 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 367899999999999999998764
No 2
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=96.17 E-value=0.0024 Score=42.83 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHhhhhhhhhhhc
Q 036779 7 SESRAAVKLQKVYRGYRTRRRL 28 (440)
Q Consensus 7 ~~~~AA~~iQK~YRgyRtRR~L 28 (440)
.++.||++||+.||+|..||.+
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~~~ 25 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQKV 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4678999999999999999865
No 3
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=92.65 E-value=0.054 Score=38.67 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=15.4
Q ss_pred hHHHHHHHHhhhhhhhhhh
Q 036779 9 SRAAVKLQKVYRGYRTRRR 27 (440)
Q Consensus 9 ~~AA~~iQK~YRgyRtRR~ 27 (440)
..||++||+.+|||..|+.
T Consensus 28 ~~aai~IQ~~~Rg~~~Rk~ 46 (48)
T 1n2d_C 28 VNCATLLQAAYRGHSIRAN 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHh
Confidence 4588899999999888864
No 4
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=91.99 E-value=0.067 Score=39.72 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=24.9
Q ss_pred hhHHHHHHHHhhhhhhhhhhccCc--cccHHHHHHHH
Q 036779 8 ESRAAVKLQKVYRGYRTRRRLADS--AVVAEELWWRA 42 (440)
Q Consensus 8 ~~~AA~~iQK~YRgyRtRR~Lad~--~v~~e~rW~~a 42 (440)
...||++||+.||||..|+..... +++.-+.||..
T Consensus 4 ~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg 40 (58)
T 2ix7_C 4 LRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRG 40 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999876543 23334445443
No 5
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=84.09 E-value=0.43 Score=35.28 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=19.3
Q ss_pred hhHHHHHHHHhhhhhhhhhhccC
Q 036779 8 ESRAAVKLQKVYRGYRTRRRLAD 30 (440)
Q Consensus 8 ~~~AA~~iQK~YRgyRtRR~Lad 30 (440)
...||++||..+|||..|+.+..
T Consensus 27 ~r~aai~IQ~~~Rg~~aR~~~~~ 49 (58)
T 2ix7_C 27 MQRAAITVQRYVRGYQARCYAKF 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34699999999999999987643
No 6
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=81.91 E-value=0.59 Score=33.18 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.1
Q ss_pred hHHHHHHHHhhhhhhhhhhccC
Q 036779 9 SRAAVKLQKVYRGYRTRRRLAD 30 (440)
Q Consensus 9 ~~AA~~iQK~YRgyRtRR~Lad 30 (440)
..||+.||+.+|||-.|+....
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~ 24 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVND 24 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999998754
No 7
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=61.11 E-value=2.8 Score=27.35 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhhhhhhh
Q 036779 10 RAAVKLQKVYRGYRTRR 26 (440)
Q Consensus 10 ~AA~~iQK~YRgyRtRR 26 (440)
=||..||..||.++.||
T Consensus 6 YAallI~d~~r~~k~~~ 22 (23)
T 3dve_B 6 YAALMIFDFYKQNKTSR 22 (26)
T ss_dssp HHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 48999999999999886
No 8
>3ohg_A Uncharacterized protein from DUF2233 family; structural genomics, unknown function, joint center for STRU genomics, JCSG; HET: MSE; 1.80A {Bacteroides ovatus}
Probab=59.49 E-value=12 Score=36.35 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=38.2
Q ss_pred ccceeEEEeCCEEEeccCCCeeecCCCCEEEEEEeCCCceEEeeccCCccccccCCCCCcccceeeEEEeccee
Q 036779 161 REHYEYVVVDGRIIHKKTGDFLDTQHGGKYIFVTSTSKKLYAGVKKKGIFHHSSFLAGGATIAAGRLVAEHGVL 234 (440)
Q Consensus 161 Re~YeViI~dGrL~~k~sG~lvdTt~~~kwIFVmdtsg~LYVG~KkkG~FqHSSFLaGg~V~AAG~I~V~nG~I 234 (440)
+...-++|+||++++...+. ....+|.++.+|+++|+.... ++-.. ..=.-++++|-+.|+||++
T Consensus 109 ~~P~G~~I~nG~~i~~~~~~------~~~~~f~i~~dG~~~I~~~~~--~~~~~-~~~~~av~~gp~Lv~nG~~ 173 (285)
T 3ohg_A 109 RRVMGLFYKDGVCINSQYFE------GHDEVLYQLKNGETYVGQADE--ALAHE-ANLLHALGGYGLLVKDGVV 173 (285)
T ss_dssp TEESSCEEETTEEEECCCCT------TCCEEEEEETTSCEEEEEHHH--HHTTG-GGEEEEEEESCEEEETTEE
T ss_pred CceeEEEEECCEEEecCCCC------CcceEEEEeeCCeEEEEecch--hhhhh-cCccEEEEcchhheECCeE
Confidence 45566777888887654321 133689999999999996421 10000 0001355566777777776
No 9
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=55.64 E-value=5.5 Score=26.63 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=16.6
Q ss_pred HHHHHHHHhhhhhhhhhh
Q 036779 10 RAAVKLQKVYRGYRTRRR 27 (440)
Q Consensus 10 ~AA~~iQK~YRgyRtRR~ 27 (440)
=||..||-.||.+..||+
T Consensus 3 YAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hHHHHHHHHHHHHHhhhh
Confidence 389999999999999987
No 10
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=54.83 E-value=5.4 Score=26.00 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=15.8
Q ss_pred hhHHHHHHHHhhhhhhhhh...
Q 036779 8 ESRAAVKLQKVYRGYRTRR... 26 (440)
Q Consensus 8 ~~~AA~~iQK~YRgyRtRR... 26 (440)
--=||..||..||.++.|+
T Consensus 5 KiYA~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 5 KIYAAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHHHHhccC...
Confidence 3458999999999999874
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=49.27 E-value=6.8 Score=44.34 Aligned_cols=19 Identities=37% Similarity=0.516 Sum_probs=10.8
Q ss_pred HHHHHHHHhhhhhhhhhhc
Q 036779 10 RAAVKLQKVYRGYRTRRRL 28 (440)
Q Consensus 10 ~AA~~iQK~YRgyRtRR~L 28 (440)
.||+.||+.||||..|+..
T Consensus 792 ~aai~IQ~~~Rg~~aR~~~ 810 (1080)
T 2dfs_A 792 RAAITIQRYVRGHQARCYA 810 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 4556666666666555543
No 12
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=41.87 E-value=35 Score=31.21 Aligned_cols=57 Identities=21% Similarity=0.353 Sum_probs=38.7
Q ss_pred CEEEEEEeCCCceEEeeccCCccccccC-----CCCCcccceeeEEEe--cceeEEecCCCCCC
Q 036779 188 GKYIFVTSTSKKLYAGVKKKGIFHHSSF-----LAGGATIAAGRLVAE--HGVLKTISAYSGHY 244 (440)
Q Consensus 188 ~kwIFVmdtsg~LYVG~KkkG~FqHSSF-----LaGg~V~AAG~I~V~--nG~Ik~Isp~SGHY 244 (440)
+..|||.+.+|.||+=..+.|......- ....++++-|.|.+- +|.|..+++.+|..
T Consensus 277 ~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 277 GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcE
Confidence 4467888888888877666676553321 123466667777774 68899999888853
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=34.81 E-value=22 Score=40.29 Aligned_cols=19 Identities=37% Similarity=0.669 Sum_probs=9.3
Q ss_pred HHHHHHHHhhhhhhhhhhc
Q 036779 10 RAAVKLQKVYRGYRTRRRL 28 (440)
Q Consensus 10 ~AA~~iQK~YRgyRtRR~L 28 (440)
.||+.||..+|||..||++
T Consensus 840 ~aai~IQs~~Rg~laRr~~ 858 (1080)
T 2dfs_A 840 DATIALQALLRGYLVRNKY 858 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555443
No 14
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=34.42 E-value=18 Score=32.60 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.2
Q ss_pred hhHHHHHHHHhhhhhhhhhhc
Q 036779 8 ESRAAVKLQKVYRGYRTRRRL 28 (440)
Q Consensus 8 ~~~AA~~iQK~YRgyRtRR~L 28 (440)
...|+++||++-|+|-+||.-
T Consensus 44 R~~~~i~iQktvR~~L~rkkh 64 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRRH 64 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999764
No 15
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=34.12 E-value=54 Score=29.96 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=32.4
Q ss_pred CEEEEEEeCCCceEEeeccCCccccccCC-----CCCcccceeeEEEe--cceeEEec
Q 036779 188 GKYIFVTSTSKKLYAGVKKKGIFHHSSFL-----AGGATIAAGRLVAE--HGVLKTIS 238 (440)
Q Consensus 188 ~kwIFVmdtsg~LYVG~KkkG~FqHSSFL-----aGg~V~AAG~I~V~--nG~Ik~Is 238 (440)
+..+||.+.+|.||+=..+.|.+....-+ ...++.+-|.|.|- +|.|..+.
T Consensus 318 ~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 318 NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 44688888889898877667776543323 23345556666663 57666653
No 16
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=33.91 E-value=16 Score=40.41 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=23.6
Q ss_pred hhHHHHHHHHhhhhhhhhhhccCc-----cccHHHHHHH
Q 036779 8 ESRAAVKLQKVYRGYRTRRRLADS-----AVVAEELWWR 41 (440)
Q Consensus 8 ~~~AA~~iQK~YRgyRtRR~Lad~-----~v~~e~rW~~ 41 (440)
...+|++||+.+|||..||+..-. ++..=+++|.
T Consensus 778 l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R 816 (837)
T 1kk8_A 778 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIR 816 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999887532 3444444444
No 17
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=32.93 E-value=43 Score=32.87 Aligned_cols=75 Identities=13% Similarity=0.233 Sum_probs=41.6
Q ss_pred eCCEEEeccCCC----eeecCCC----CEEEEEE--eCCCceEEeeccCCc---------ccccc-CC-CCCccc-----
Q 036779 169 VDGRIIHKKTGD----FLDTQHG----GKYIFVT--STSKKLYAGVKKKGI---------FHHSS-FL-AGGATI----- 222 (440)
Q Consensus 169 ~dGrL~~k~sG~----lvdTt~~----~kwIFVm--dtsg~LYVG~KkkG~---------FqHSS-FL-aGg~V~----- 222 (440)
++|+++|..... ++.+... +..+||. ..+|+||+-....|. .-.+| |. .|.+|+
T Consensus 28 ~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~ 107 (339)
T 2be1_A 28 RNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGK 107 (339)
T ss_dssp TTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC--------
T ss_pred CCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccc
Confidence 467777765443 2322111 2256776 469999987643332 11232 43 466677
Q ss_pred --ceeeEEE--ecceeEEecCCCCC
Q 036779 223 --AAGRLVA--EHGVLKTISAYSGH 243 (440)
Q Consensus 223 --AAG~I~V--~nG~Ik~Isp~SGH 243 (440)
.-|.+.+ .+|.|-+|...+|-
T Consensus 108 ~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 108 IVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp --CCEEEEECEEEEEEEEEETTTCC
T ss_pred cccCCEEEEEecCCEEEEEECCCCc
Confidence 6776665 47888888888774
No 18
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=30.29 E-value=19 Score=29.72 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhhhhhhhh
Q 036779 10 RAAVKLQKVYRGYRTRRR 27 (440)
Q Consensus 10 ~AA~~iQK~YRgyRtRR~ 27 (440)
=||..||..||.||.|++
T Consensus 64 YA~llI~d~~r~~k~r~~ 81 (81)
T 3g43_E 64 YATFLIQEYFRKFKKREQ 81 (81)
T ss_dssp HHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 399999999999999874
No 19
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=29.98 E-value=28 Score=26.02 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=15.8
Q ss_pred hhHHHHHHHHhhhhhhhhhh
Q 036779 8 ESRAAVKLQKVYRGYRTRRR 27 (440)
Q Consensus 8 ~~~AA~~iQK~YRgyRtRR~ 27 (440)
+..|+..||+..|+|=.+|+
T Consensus 29 ~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 29 KSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 45677799999999988774
No 20
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=27.72 E-value=26 Score=25.14 Aligned_cols=28 Identities=32% Similarity=0.606 Sum_probs=20.9
Q ss_pred cCCCChhHHHHHH-HHHHHHHhcCcccccc
Q 036779 79 GKGLSKDSKAQKL-AFQHWIEAIDPRHRYG 107 (440)
Q Consensus 79 gkgls~d~kAqkl-a~qhwLE~iD~rHRYG 107 (440)
|.+.+.++-||=+ +|+|+|-+|- |+|||
T Consensus 9 g~~a~pEela~Y~~~Lr~YinlvT-RqRyG 37 (37)
T 1f8p_A 9 GEDAPAEDLARYYSALRHYINLIT-RQRYX 37 (37)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHHH-HHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhc-ccccC
Confidence 5667778877765 6999998774 88887
No 21
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A*
Probab=27.34 E-value=2.3e+02 Score=23.69 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=29.6
Q ss_pred EecCCCCCCCCCHHHHHHHHHHHHHcCCCCCceEEecC
Q 036779 236 TISAYSGHYRPTEDRLHSFLSFLKENGVNMDEVEVEKA 273 (440)
Q Consensus 236 ~Isp~SGHYRPt~enf~~Fi~~L~e~GVDLs~V~v~~~ 273 (440)
.+|=+|--=.++.+-+..|.+++++.|++.+++-+.+-
T Consensus 110 ~~~llsR~~~~~~e~~~~f~~~~~~~G~~~~~i~~~~~ 147 (160)
T 3sao_A 110 MMRLYSRSREVSPTAMAIFRKLARERNYTDEMVAVLPS 147 (160)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHHHTTTCCGGGEEECCC
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHcCCCHHHEEECCC
Confidence 33444555557889999999999999999999876544
No 22
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=26.02 E-value=37 Score=25.38 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=14.6
Q ss_pred hhHHHHHHHHhhhhhhhhhh
Q 036779 8 ESRAAVKLQKVYRGYRTRRR 27 (440)
Q Consensus 8 ~~~AA~~iQK~YRgyRtRR~ 27 (440)
+..|+..||+..|+|=.+|+
T Consensus 31 ~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 31 QRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 35567788888888877764
No 23
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=25.81 E-value=47 Score=24.28 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=21.6
Q ss_pred cCCCChhHHHHHH-HHHHHHHhcCcccccc
Q 036779 79 GKGLSKDSKAQKL-AFQHWIEAIDPRHRYG 107 (440)
Q Consensus 79 gkgls~d~kAqkl-a~qhwLE~iD~rHRYG 107 (440)
|.+.|.++-||=+ +|+|+|-+|- |+|||
T Consensus 13 g~~aspEela~Y~~~Lr~YinlvT-R~RyG 41 (41)
T 2l60_A 13 LKKLSPEELNRYYASLRHYLNLVT-RQRYX 41 (41)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHT-TTCC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhc-ccccC
Confidence 6777888888765 5999998875 89998
No 24
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=23.73 E-value=1.1e+02 Score=27.61 Aligned_cols=14 Identities=14% Similarity=0.541 Sum_probs=10.1
Q ss_pred cccccCCCCceeee
Q 036779 370 LKWTTGAGPRIGCV 383 (440)
Q Consensus 370 ~kWstgaGpRIgcv 383 (440)
+.|+-...+++|-+
T Consensus 255 ~~W~~~~~~~~~~~ 268 (276)
T 3no2_A 255 VVWQLNDKVKFGMI 268 (276)
T ss_dssp EEEEECCTTTSCCC
T ss_pred EEEEecCcccccce
Confidence 57887777777754
No 25
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=22.41 E-value=1.5e+02 Score=30.97 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=38.3
Q ss_pred CEEEEEEeCCCceEEeeccCCccc----------cccCCCCCcccceeeEEEe--------cceeEEecCCCCC
Q 036779 188 GKYIFVTSTSKKLYAGVKKKGIFH----------HSSFLAGGATIAAGRLVAE--------HGVLKTISAYSGH 243 (440)
Q Consensus 188 ~kwIFVmdtsg~LYVG~KkkG~Fq----------HSSFLaGg~V~AAG~I~V~--------nG~Ik~Isp~SGH 243 (440)
+..|||.+.+++||+=..+.|... +.....+.+++.-|.+.|- +|.|..++..+|-
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~ 194 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGK 194 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCc
Confidence 346788888888887765555432 1134456677777888774 5789999988886
No 26
>3kff_A MUP 4, major urinary protein 4; pheromone, lipocalin, beta barrel, DI bond, pheromone-binding, secreted, transport, transport Pro; 0.96A {Mus musculus} SCOP: b.60.1.1 PDB: 3kfg_A 3kfh_A 3kfi_A 2l9c_A 2lb6_A 1i06_A 1i05_A* 1i04_A 1mup_A 1znd_A 1qy0_A* 1qy2_A* 1qy1_A 1zne_A 1zng_A 1znh_A 1znk_A* 1znl_A* 2dm5_A* 2ozq_A ...
Probab=21.27 E-value=3.4e+02 Score=22.60 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=28.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCCCCCceEEecC
Q 036779 238 SAYSGHYRPTEDRLHSFLSFLKENGVNMDEVEVEKA 273 (440)
Q Consensus 238 sp~SGHYRPt~enf~~Fi~~L~e~GVDLs~V~v~~~ 273 (440)
+=+|--=.++.+-+..|.+++++.|++.+++-..+-
T Consensus 118 ~ll~R~~~~~~~~~~~f~~~~~~~G~~~~~i~~~~~ 153 (162)
T 3kff_A 118 ELYGRKADLNSDIKEKFVKLCEEHGIIKENIIDLTK 153 (162)
T ss_dssp EEEESSSCCCHHHHHHHHHHHHHTTCCGGGEEEGGG
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCCHHHEEECCC
Confidence 334444456789999999999999999999976543
No 27
>2l5p_A Lipocalin 12; beta barrel, transport protein; NMR {Rattus norvegicus}
Probab=20.55 E-value=1.6e+02 Score=25.26 Aligned_cols=37 Identities=11% Similarity=0.290 Sum_probs=27.3
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHHcCCCCCceEEecC
Q 036779 237 ISAYSGHYRPTEDRLHSFLSFLKENGVNMDEVEVEKA 273 (440)
Q Consensus 237 Isp~SGHYRPt~enf~~Fi~~L~e~GVDLs~V~v~~~ 273 (440)
+|=+|--=.++.+-+..|.+++++.|+|.+++-+.+-
T Consensus 130 ~~llsR~~~~~~e~~~~f~~~~~~~G~~~~~ii~~~q 166 (184)
T 2l5p_A 130 VSLLGRDWKITHKTIDRFIALTKTQNLTKNNLLFPDL 166 (184)
T ss_dssp EEEEESSSCCCHHHHHHHHHHHHHTTCCGGGEECCCC
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHcCCChHHEEEcCC
Confidence 3333333345678899999999999999999866544
No 28
>2vnl_A Bifunctional tail protein, PIIGCN4; chimera, hydrolase, late protein, viral protein, phage P22 tailspike protein, mutant Y108WDEL; 1.80A {Enterobacteria phage P22} PDB: 2vky_B
Probab=20.50 E-value=29 Score=31.51 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=13.7
Q ss_pred cccceeeEEEecceeEEecCCCCC
Q 036779 220 ATIAAGRLVAEHGVLKTISAYSGH 243 (440)
Q Consensus 220 ~V~AAG~I~V~nG~Ik~Isp~SGH 243 (440)
..-+||..+ .||.|-.....+||
T Consensus 65 vin~ag~fv-~ng~l~~~vt~~gh 87 (151)
T 2vnl_A 65 IINAAGKIV-YNGQLVKIVTVQGH 87 (151)
T ss_dssp EECTTSCEE-ETTEECCEECCSSC
T ss_pred eeecCCcee-eCCEEEEEeccCCC
Confidence 334555444 78888555555666
Done!