BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036780
         (231 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FAF|A Chain A, The Structure Of Chicken Mitochondrial Pepck.
 pdb|2FAF|B Chain B, The Structure Of Chicken Mitochondrial Pepck.
 pdb|2FAH|A Chain A, The Structure Of Mitochondrial Pepck, Complex With Mn And
           Gdp
 pdb|2FAH|B Chain B, The Structure Of Mitochondrial Pepck, Complex With Mn And
           Gdp
 pdb|2FAH|C Chain C, The Structure Of Mitochondrial Pepck, Complex With Mn And
           Gdp
 pdb|2FAH|D Chain D, The Structure Of Mitochondrial Pepck, Complex With Mn And
           Gdp
 pdb|2QZY|A Chain A, The Structure Of Chicken Mitochondrial Pepck In Complex
           With Pep
 pdb|2QZY|B Chain B, The Structure Of Chicken Mitochondrial Pepck In Complex
           With Pep
          Length = 608

 Score = 29.3 bits (64), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 124 HEMTHVWQWNGNNAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSVAARFL 183
           +E   VW   G+NA  + W+   I    R  A   P GW  P EG +   G   V     
Sbjct: 507 NEGRFVWPGFGHNARVLAWIFGRIQG--RDTARPTPIGWV-PKEGDLDLGGLPGV----- 558

Query: 184 DYCN--DLRNGFVAELNKKMRDGYNDNFFMEL 213
           DY     +  GF  E  +++R+ Y +NF  +L
Sbjct: 559 DYSQLFPMEKGFWEEECRQLREYYGENFGADL 590


>pdb|3ZS6|A Chain A, The Structural Characterization Of Burkholderia
           Pseudomallei Oppa
          Length = 506

 Score = 28.1 bits (61), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 185 YCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDY 225
           YCN   +  VAE N+K+ DG        LL ++ D   NDY
Sbjct: 431 YCNPKVDSLVAEANQKLDDGAR----AALLTQAHDLAMNDY 467


>pdb|3TOV|A Chain A, The Crystal Structure Of The Glycosyl Transferase Family 9
           From Veillonella Parvula Dsm 2008
 pdb|3TOV|B Chain B, The Crystal Structure Of The Glycosyl Transferase Family 9
           From Veillonella Parvula Dsm 2008
          Length = 349

 Score = 27.3 bits (59), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 55  TAATDFIWRLFQQN-TEADRKNIPQVDLFIDDMKPGEIAFTSNNGIH 100
           T  + F++R F    T  DRK     D +I+ ++   +  TSN+G+H
Sbjct: 115 TGXSHFLFRPFXTKYTRLDRKTRHAADXYINVLEQLGVTDTSNSGLH 161


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,759,102
Number of Sequences: 62578
Number of extensions: 342119
Number of successful extensions: 792
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 792
Number of HSP's gapped (non-prelim): 8
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)