BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036780
(231 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B2GA61|HTPX_LACF3 Protease HtpX homolog OS=Lactobacillus fermentum (strain NBRC 3956
/ LMG 18251) GN=htpX PE=3 SV=1
Length = 299
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 61 IWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSG 120
+W + + R +P+V IDD P A T NN H + + ++E
Sbjct: 83 LWHIVEDMALVARVPMPRV-FIIDDPSPNAFA-TGNNPQHAAVAATTGLLAIMNREELES 140
Query: 121 VMYHEMTHVWQWN 133
VM HEMTHV ++
Sbjct: 141 VMAHEMTHVRNYD 153
>sp|Q88Z48|HTPX_LACPL Protease HtpX homolog OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=htpX PE=3 SV=1
Length = 299
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 61 IWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSG 120
+W + + + +P+V IDD P A T N+ H I L ++E G
Sbjct: 83 LWHIVEDMALVAKVPMPRV-FIIDDESPNAFA-TGNDPEHAAVAVTTGIQARLTREEMEG 140
Query: 121 VMYHEMTHVWQWN 133
V+ HEM+HV ++
Sbjct: 141 VIGHEMSHVRNYD 153
>sp|Q03T13|HTPX_LACBA Protease HtpX homolog OS=Lactobacillus brevis (strain ATCC 367 /
JCM 1170) GN=htpX PE=3 SV=1
Length = 298
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 61 IWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSG 120
+W L + + +P+V IDD P A T N+ H I L ++E G
Sbjct: 83 LWHLIEDMALVAQVPMPRV-FIIDDPSPNAFA-TGNDPKHAAVAVTTGIMERLNREELEG 140
Query: 121 VMYHEMTHV 129
V+ HEM+HV
Sbjct: 141 VIGHEMSHV 149
>sp|Q5FMS7|HTPX_LACAC Protease HtpX homolog OS=Lactobacillus acidophilus (strain ATCC
700396 / NCK56 / N2 / NCFM) GN=htpX PE=3 SV=1
Length = 298
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 49 YAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQN 108
+A++ A +W + + R +P+V I D P A T + H Q
Sbjct: 70 HAQEIQEADNPELWHIVEDMAMVARVPMPRV-FIIPDPSPNAFA-TGRDPEHSAVAVTQG 127
Query: 109 IPVDLIKQEFSGVMYHEMTHVWQWNGNNAPNIGWLIEGIADFV 151
I + ++E GV+ HE++HV ++ + IG ++ G+ F+
Sbjct: 128 ILELMNREELEGVLGHELSHVRNYDILLS-TIGVVLVGVISFI 169
>sp|B2G5L7|HTPX_LACRJ Protease HtpX homolog OS=Lactobacillus reuteri (strain JCM 1112)
GN=htpX PE=3 SV=1
Length = 298
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 61 IWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSG 120
+W + + R +P+V I D P A T N+ H + + ++E G
Sbjct: 83 LWHIVEDMALVARVPMPKV-YIIHDPSPNAFA-TGNDPEHAAVAATTGLMEKMNREELEG 140
Query: 121 VMYHEMTHVWQWN 133
VM HEMTHV ++
Sbjct: 141 VMAHEMTHVRNYD 153
>sp|A5VI38|HTPX_LACRD Protease HtpX homolog OS=Lactobacillus reuteri (strain DSM 20016)
GN=htpX PE=3 SV=1
Length = 298
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 61 IWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSG 120
+W + + R +P+V I D P A T N+ H + + ++E G
Sbjct: 83 LWHIVEDMALVARVPMPKV-YIIHDPSPNAFA-TGNDPEHAAVAATTGLMEKMNREELEG 140
Query: 121 VMYHEMTHVWQWN 133
VM HEMTHV ++
Sbjct: 141 VMAHEMTHVRNYD 153
>sp|Q8IS20|GEFC_DICDI Ras guanine nucleotide exchange factor C OS=Dictyostelium
discoideum GN=gefC PE=2 SV=1
Length = 1457
Score = 32.3 bits (72), Expect = 2.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 105 FIQNIPVDLIKQEFSG----VMYHEMTHVWQWNGNNAPNIGWLIE 145
F++N P++ IKQ G V+ E +VW W N+ +G+L++
Sbjct: 326 FLENSPLNTIKQVALGNYHIVLLTEGGNVWTWGSNSNGQLGYLVD 370
>sp|P31352|L_MABVM RNA-directed RNA polymerase L OS=Lake Victoria marburgvirus (strain
Musoke-80) GN=L PE=3 SV=2
Length = 2331
Score = 32.3 bits (72), Expect = 3.0, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 173 QGHSSVAARFLDYCN-----DLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQ 220
QG + + LDY N DLRN F+ L K+ YND + L+ K++++
Sbjct: 2206 QGKQHLHSLMLDYENNSPLLDLRNHFICSLRGKITKYYNDILKLNLVIKAVEK 2258
>sp|Q6UY63|L_MABVO RNA-directed RNA polymerase L OS=Lake Victoria marburgvirus (strain
Ozolin-75) GN=L PE=3 SV=1
Length = 2331
Score = 32.3 bits (72), Expect = 3.1, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 173 QGHSSVAARFLDYCN-----DLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQ 220
QG + + LDY N DLRN F+ L K+ YND + L+ K++++
Sbjct: 2206 QGKQHLHSLMLDYENNSPLLDLRNHFICSLRGKITKYYNDILKLNLVIKAVEK 2258
>sp|Q1PD54|L_MABVA RNA-directed RNA polymerase L OS=Lake Victoria marburgvirus (strain
Angola/2005) GN=L PE=3 SV=1
Length = 2331
Score = 32.3 bits (72), Expect = 3.1, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 173 QGHSSVAARFLDYCN-----DLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQ 220
QG + + LDY N DLRN F+ L K+ YND + L+ K++++
Sbjct: 2206 QGKQHLHSLMLDYENNSPLLDLRNHFICSLRGKITKYYNDILKLNLVIKAVEK 2258
>sp|P35262|L_MABVP RNA-directed RNA polymerase L OS=Lake Victoria marburgvirus (strain
Popp-67) GN=L PE=3 SV=1
Length = 2331
Score = 32.0 bits (71), Expect = 3.3, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 173 QGHSSVAARFLDYCN-----DLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQ 220
QG + + LDY N DLRN F+ L K+ YND + L+ K++++
Sbjct: 2206 QGKQHLHSLMLDYENNSPLLDLRNHFICSLRGKITKYYNDILKLNLVIKAVEK 2258
>sp|Q1PDC4|L_MABVR RNA-directed RNA polymerase L OS=Lake Victoria marburgvirus (strain
Ravn-87) GN=L PE=3 SV=1
Length = 2327
Score = 31.6 bits (70), Expect = 4.7, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 173 QGHSSVAARFLDYCN-----DLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQ 220
QG + + LDY N DLRN F+ L K+ YND + L+ +++++
Sbjct: 2206 QGRQHLHSLMLDYENNSPLLDLRNHFICSLRGKITKYYNDILKLNLVVRAVER 2258
>sp|Q5ZJF4|PRDX6_CHICK Peroxiredoxin-6 OS=Gallus gallus GN=PRDX6 PE=2 SV=3
Length = 224
Score = 30.8 bits (68), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 18 MHGIHAVDYTVSNRAATTPGGMRFDKEIGA------EYAKQTMTAATDFIWRLFQQNTEA 71
M G+ D + A TT GG+RF +G + + T + R + E
Sbjct: 1 MPGLLLGDEAPNFEADTTQGGIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEF 60
Query: 72 DRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLI 114
++N+ + L ID + P +A++ + + GD ++ +P +I
Sbjct: 61 SKRNVKMIALSIDSV-PDHLAWSKDINAYNGDQPVEKLPFPII 102
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,724,090
Number of Sequences: 539616
Number of extensions: 4003461
Number of successful extensions: 8511
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 8504
Number of HSP's gapped (non-prelim): 22
length of query: 231
length of database: 191,569,459
effective HSP length: 114
effective length of query: 117
effective length of database: 130,053,235
effective search space: 15216228495
effective search space used: 15216228495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)