Query 036780
Match_columns 231
No_of_seqs 157 out of 206
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:25:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04450 BSP: Peptidase of pla 100.0 2.4E-72 5.3E-77 487.5 20.2 195 22-225 2-205 (205)
2 PF13485 Peptidase_MA_2: Pepti 98.4 5.1E-07 1.1E-11 69.0 5.7 58 89-153 3-62 (128)
3 PF13699 DUF4157: Domain of un 97.2 0.00039 8.4E-09 52.2 3.7 53 75-133 17-76 (79)
4 PF10263 SprT-like: SprT-like 96.6 0.0041 8.9E-08 50.7 5.6 52 79-134 20-76 (157)
5 PF01433 Peptidase_M1: Peptida 96.6 0.017 3.8E-07 52.9 9.9 98 49-155 229-334 (390)
6 TIGR02412 pepN_strep_liv amino 96.3 0.11 2.4E-06 53.8 14.9 169 49-227 223-440 (831)
7 PRK04860 hypothetical protein; 96.2 0.0073 1.6E-07 51.1 4.5 50 78-132 28-77 (160)
8 COG3091 SprT Zn-dependent meta 96.1 0.005 1.1E-07 51.9 3.3 89 50-157 7-95 (156)
9 PF13203 DUF2201_N: Putative m 95.8 0.011 2.5E-07 53.2 4.4 38 90-131 36-73 (292)
10 PRK04351 hypothetical protein; 95.7 0.034 7.3E-07 46.6 6.4 58 78-141 25-84 (149)
11 PRK03072 heat shock protein Ht 95.2 0.03 6.5E-07 51.1 4.9 52 77-135 88-144 (288)
12 smart00731 SprT SprT homologue 95.0 0.016 3.4E-07 47.7 2.2 51 78-133 23-74 (146)
13 PF01435 Peptidase_M48: Peptid 95.0 0.069 1.5E-06 45.2 6.2 41 92-136 63-107 (226)
14 PRK01345 heat shock protein Ht 94.9 0.047 1E-06 50.6 5.3 41 90-134 95-140 (317)
15 PRK05457 heat shock protein Ht 94.8 0.056 1.2E-06 49.3 5.5 53 75-134 93-150 (284)
16 PRK03001 M48 family peptidase; 94.8 0.055 1.2E-06 49.0 5.4 41 90-134 95-140 (283)
17 COG4783 Putative Zn-dependent 94.7 0.088 1.9E-06 51.6 6.8 50 78-132 93-144 (484)
18 PF10026 DUF2268: Predicted Zn 94.6 0.22 4.9E-06 42.8 8.5 49 114-163 61-118 (195)
19 PRK04897 heat shock protein Ht 94.2 0.069 1.5E-06 48.9 4.7 53 75-134 96-153 (298)
20 KOG1046 Puromycin-sensitive am 94.2 0.19 4.1E-06 52.6 8.4 106 48-162 257-371 (882)
21 PRK03982 heat shock protein Ht 94.0 0.11 2.4E-06 47.2 5.6 41 90-134 96-141 (288)
22 COG0501 HtpX Zn-dependent prot 93.8 0.055 1.2E-06 48.1 3.2 35 97-135 140-174 (302)
23 PRK02391 heat shock protein Ht 93.8 0.096 2.1E-06 48.1 4.8 42 89-134 103-149 (296)
24 PF10460 Peptidase_M30: Peptid 93.5 1.1 2.3E-05 42.8 11.5 113 115-229 136-285 (366)
25 TIGR02414 pepN_proteo aminopep 93.0 0.28 6.1E-06 51.4 7.4 96 48-152 216-319 (863)
26 PRK02870 heat shock protein Ht 93.0 0.14 3.1E-06 48.0 4.8 52 76-134 133-189 (336)
27 PF07607 DUF1570: Protein of u 93.0 0.058 1.3E-06 44.2 1.8 32 120-151 3-38 (128)
28 PRK01265 heat shock protein Ht 91.5 0.28 6.1E-06 45.9 4.7 40 90-133 111-155 (324)
29 PRK14015 pepN aminopeptidase N 90.7 0.72 1.6E-05 48.5 7.3 96 48-151 229-331 (875)
30 PF05569 Peptidase_M56: BlaR1 89.3 0.61 1.3E-05 42.0 4.8 104 77-208 158-265 (299)
31 PF08325 WLM: WLM domain; Int 88.4 1.8 3.8E-05 37.5 6.8 101 47-158 15-122 (186)
32 PF12315 DUF3633: Protein of u 88.3 0.46 9.9E-06 42.2 3.1 34 119-153 94-128 (212)
33 PHA02456 zinc metallopeptidase 85.4 0.58 1.3E-05 38.1 2.0 32 97-136 66-97 (141)
34 TIGR02411 leuko_A4_hydro leuko 82.6 0.92 2E-05 45.6 2.6 33 119-153 280-316 (601)
35 COG0308 PepN Aminopeptidase N 82.2 4.6 0.0001 42.3 7.6 171 48-228 241-462 (859)
36 PF05299 Peptidase_M61: M61 gl 80.0 0.65 1.4E-05 37.7 0.4 41 117-159 3-62 (122)
37 PF01863 DUF45: Protein of unk 79.5 7.4 0.00016 32.7 6.7 59 80-147 131-191 (205)
38 PF09768 Peptidase_M76: Peptid 77.7 1.5 3.2E-05 37.7 1.9 49 76-131 35-84 (173)
39 PF14891 Peptidase_M91: Effect 76.0 1.3 2.8E-05 37.4 1.1 12 120-131 105-116 (174)
40 COG4784 Putative Zn-dependent 69.3 17 0.00037 35.1 6.9 52 75-131 84-137 (479)
41 COG3864 Uncharacterized protei 65.6 5.3 0.00011 37.9 2.7 34 94-131 49-82 (396)
42 PF08434 CLCA_N: Calcium-activ 64.6 40 0.00087 30.9 8.2 33 96-129 128-160 (262)
43 PTZ00337 surface protease GP63 64.5 18 0.00038 36.6 6.4 27 98-130 215-241 (567)
44 COG1451 Predicted metal-depend 64.4 18 0.00039 32.1 5.8 58 81-147 143-202 (223)
45 PF13402 M60-like: Peptidase M 64.4 37 0.0008 30.4 7.9 81 52-133 150-234 (307)
46 PF07580 Peptidase_M26_C: M26 63.7 3.4 7.3E-05 42.9 1.2 31 92-130 372-403 (737)
47 COG3824 Predicted Zn-dependent 61.0 5.9 0.00013 32.7 1.9 59 73-132 33-123 (136)
48 PF06114 DUF955: Domain of unk 60.6 23 0.0005 26.1 5.1 32 96-135 28-59 (122)
49 PF02102 Peptidase_M35: Deuter 56.5 12 0.00027 35.6 3.6 59 78-136 248-315 (359)
50 PF02128 Peptidase_M36: Fungal 55.1 4.2 9E-05 39.1 0.1 37 119-155 186-231 (378)
51 PF10023 DUF2265: Predicted am 54.9 11 0.00024 35.8 2.8 35 115-153 162-196 (337)
52 cd04268 ZnMc_MMP_like Zinc-dep 54.2 9.6 0.00021 30.7 2.1 36 97-132 73-108 (165)
53 KOG1047 Bifunctional leukotrie 54.0 7.1 0.00015 39.4 1.5 33 119-151 289-323 (613)
54 COG3227 LasB Zinc metalloprote 54.0 5.9 0.00013 39.3 1.0 33 120-152 339-374 (507)
55 PF08014 DUF1704: Domain of un 51.7 21 0.00045 33.8 4.2 71 78-156 132-214 (349)
56 COG1458 Predicted DNA-binding 51.6 13 0.00028 33.1 2.6 88 121-230 54-155 (221)
57 smart00235 ZnMc Zinc-dependent 50.1 13 0.00027 29.5 2.2 31 92-131 67-99 (140)
58 cd04278 ZnMc_MMP Zinc-dependen 49.4 12 0.00027 30.4 2.1 37 96-132 85-121 (157)
59 COG3975 Predicted protease wit 47.7 56 0.0012 33.0 6.6 72 75-151 205-293 (558)
60 PF01457 Peptidase_M8: Leishma 46.3 18 0.00038 35.8 3.0 99 98-203 194-328 (521)
61 PF12725 DUF3810: Protein of u 46.1 34 0.00073 31.9 4.6 80 120-222 198-289 (318)
62 COG5504 Predicted Zn-dependent 43.9 51 0.0011 30.5 5.2 75 73-156 94-185 (280)
63 KOG3314 Ku70-binding protein [ 43.4 23 0.0005 30.8 2.8 48 77-131 57-104 (194)
64 PF14521 Aspzincin_M35: Lysine 42.6 14 0.0003 30.5 1.4 35 91-128 67-106 (148)
65 cd04272 ZnMc_salivary_gland_MP 42.0 93 0.002 26.8 6.5 78 50-136 75-165 (220)
66 PF04228 Zn_peptidase: Putativ 41.1 20 0.00044 33.2 2.3 38 92-132 140-184 (292)
67 KOG2661 Peptidase family M48 [ 41.0 1.5E+02 0.0033 28.7 8.0 34 95-131 255-288 (424)
68 COG1644 RPB10 DNA-directed RNA 39.6 23 0.00049 25.8 1.9 16 214-229 10-25 (63)
69 PF14247 DUF4344: Domain of un 39.4 96 0.0021 27.6 6.2 73 52-132 20-106 (220)
70 COG4219 MecR1 Antirepressor re 37.1 43 0.00093 31.8 3.8 55 75-134 150-206 (337)
71 PF01447 Peptidase_M4: Thermol 36.8 20 0.00043 29.9 1.4 36 92-130 112-147 (150)
72 cd04277 ZnMc_serralysin_like Z 36.6 1.6E+02 0.0035 24.4 7.0 54 77-132 63-127 (186)
73 PF00413 Peptidase_M10: Matrix 36.3 19 0.00042 28.5 1.2 33 98-132 87-119 (154)
74 cd04279 ZnMc_MMP_like_1 Zinc-d 35.9 22 0.00048 28.8 1.5 20 116-135 102-121 (156)
75 PF12388 Peptidase_M57: Dual-a 35.1 21 0.00046 31.7 1.4 27 98-130 119-145 (211)
76 PF13076 DUF3940: Protein of u 33.9 49 0.0011 21.6 2.6 30 197-227 7-37 (38)
77 KOG3624 M13 family peptidase [ 31.9 66 0.0014 32.6 4.5 36 94-130 488-530 (687)
78 KOG1675 Predicted cyclin [Gene 31.6 34 0.00074 32.4 2.2 65 159-229 231-297 (343)
79 PTZ00257 Glycoprotein GP63 (le 29.2 38 0.00082 34.7 2.2 31 98-132 240-270 (622)
80 PTZ00391 transport protein par 28.6 31 0.00067 29.5 1.3 47 173-222 34-83 (168)
81 PRK04016 DNA-directed RNA poly 28.2 46 0.001 24.2 1.9 16 214-229 10-25 (62)
82 PF04298 Zn_peptidase_2: Putat 28.2 81 0.0017 28.3 3.9 51 96-153 72-122 (222)
83 PF01401 Peptidase_M2: Angiote 27.8 46 0.001 33.8 2.6 36 120-155 351-393 (595)
84 cd04327 ZnMc_MMP_like_3 Zinc-d 25.8 41 0.00088 28.7 1.6 15 117-131 91-105 (198)
85 PF04530 Viral_Beta_CD: Viral 25.8 1.6E+02 0.0034 24.2 4.9 17 125-142 106-122 (122)
86 PLN00032 DNA-directed RNA poly 24.9 55 0.0012 24.4 1.9 16 214-229 10-25 (71)
87 PF06262 DUF1025: Possibl zinc 24.8 59 0.0013 25.3 2.2 22 113-134 68-89 (97)
88 PF02130 UPF0054: Uncharacteri 24.7 1E+02 0.0022 25.3 3.7 61 74-135 59-125 (145)
89 PRK15435 bifunctional DNA-bind 24.2 2E+02 0.0043 27.1 5.9 74 152-226 61-136 (353)
90 PF10005 DUF2248: Uncharacteri 24.0 1.6E+02 0.0034 28.2 5.2 58 75-134 126-194 (343)
91 TIGR02421 QEGLA conserved hypo 23.8 4.4E+02 0.0096 25.3 8.2 74 78-159 155-240 (366)
92 smart00528 HNS Domain in histo 23.8 42 0.0009 22.8 1.0 17 131-148 20-36 (46)
93 cd04281 ZnMc_BMP1_TLD Zinc-dep 23.7 36 0.00077 29.7 0.8 12 119-130 88-99 (200)
94 PF02163 Peptidase_M50: Peptid 23.6 48 0.001 27.5 1.6 14 119-132 8-21 (192)
95 COG4307 Uncharacterized protei 23.4 5.3E+02 0.012 24.3 8.3 55 88-151 131-195 (349)
96 cd04273 ZnMc_ADAMTS_like Zinc- 23.3 94 0.002 26.5 3.3 86 50-141 69-165 (207)
97 PF01431 Peptidase_M13: Peptid 23.2 82 0.0018 26.5 2.9 34 97-131 9-49 (206)
98 COG2321 Predicted metalloprote 23.2 58 0.0013 30.4 2.1 38 92-132 137-181 (295)
99 cd04283 ZnMc_hatching_enzyme Z 21.3 43 0.00093 28.8 0.8 12 119-130 78-89 (182)
100 KOG3714 Meprin A metalloprotea 21.0 41 0.00088 32.4 0.7 12 119-130 160-171 (411)
101 TIGR00868 hCaCC calcium-activa 20.6 8E+02 0.017 26.4 10.0 33 96-129 128-160 (863)
102 COG5664 Predicted secreted Zn- 20.3 6E+02 0.013 22.4 9.7 24 19-42 26-49 (201)
103 KOG2719 Metalloprotease [Gener 20.1 58 0.0013 31.9 1.5 33 97-130 260-292 (428)
No 1
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=100.00 E-value=2.4e-72 Score=487.46 Aligned_cols=195 Identities=47% Similarity=0.915 Sum_probs=184.9
Q ss_pred ceEEEEEecCCCCCccchhHhhhhchHHHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEEEeccCCCceEEeeC----C
Q 036780 22 HAVDYTVSNRAATTPGGMRFDKEIGAEYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSN----N 97 (231)
Q Consensus 22 ~~~~~~v~n~a~~t~gg~rF~~~i~~~~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~l~d~~~~GVA~t~g----~ 97 (231)
++|+|++.| ++||||+||++.|+ +++++|.+|+.+|+++|+++ |.++|+|++|||+|++| +|||||+| .
T Consensus 2 p~~~l~v~n--~~s~Gg~~F~~~~~--~a~~~L~~a~~~V~~~ly~~-~~~~~~v~~Vt~~~~~~--~gVA~t~gd~~~~ 74 (205)
T PF04450_consen 2 PKFRLEVNN--LDSPGGRRFDRFIP--DAEQVLRDASRFVWRLLYQS-PADRKPVRSVTLILDDM--DGVAYTSGDDDHK 74 (205)
T ss_pred CeEEEEeeC--CCCHHHHHHHHHhc--CHHHHHHHHHHHHHHHhCCC-CCCCCcccEEEEEEECC--CeeEEEecCCCcc
Confidence 478899988 99999999999994 58899999999999999877 99999999999999999 99999999 7
Q ss_pred eEEEcchhhhcCCc-hhhhhHHHHHHHHhhhhhhccCCCCCCCCcchhhhHHHHHHHhhCcCCCCCCCCCCCCCcccCcc
Q 036780 98 GIHYGDDFIQNIPV-DLIKQEFSGVMYHEMTHVWQWNGNNAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHS 176 (231)
Q Consensus 98 ~I~~s~~~i~~~~~-d~~~~ei~Gvl~HE~~Hv~Q~~~~g~~aP~~liEGIADyVRl~ag~~~~~w~~p~~g~~wd~gY~ 176 (231)
+||||++||++++. ++++.||+|||+|||||||||+++|. +|+|||||||||||++|||+|+||++|+++++||+||
T Consensus 75 ~I~~S~~~i~~~~~~~~~~~Ei~Gvl~HE~~H~~Q~~~~~~-~P~~liEGIADyVRl~aG~~~~~w~~p~~~~~wd~gY- 152 (205)
T PF04450_consen 75 EIHFSARYIAKYPADGDVRDEIIGVLYHEMVHCWQWDGRGT-APGGLIEGIADYVRLKAGYAPPHWKRPGGGDSWDDGY- 152 (205)
T ss_pred EEEEeHHHHhhcccccchHHHHHHHHHHHHHHHhhcCCCCC-CChhheecHHHHHHHHcCCCCccccCCCCCCCccccc-
Confidence 99999999999984 34899999999999999999999998 9999999999999999999999999999888999999
Q ss_pred hhHhHHHHHHhc--cCCcHHHHHHHHHhc-cC-CHHHHHHHhCCCHHHHHHHH
Q 036780 177 SVAARFLDYCND--LRNGFVAELNKKMRD-GY-NDNFFMELLGKSIDQLWNDY 225 (231)
Q Consensus 177 ~~TA~FL~wle~--~~~gfV~~LN~~mr~-~y-s~~~~~~~~G~~v~~LW~eY 225 (231)
++|||||+|||+ +++|||++||++||+ +| ++++|+++||++|++||+||
T Consensus 153 ~~TA~FL~wle~~~~~~gfV~~LN~~m~~~~y~~~~~~~~l~G~~v~~LW~eY 205 (205)
T PF04450_consen 153 RTTARFLDWLEDNRYGKGFVRRLNEAMRRDKYSSDDFWKELLGKPVDELWAEY 205 (205)
T ss_pred HHHHHHHHHHHhcccCccHHHHHHHHHhhCCCCcHhHHHHHHCcCHHHHHhhC
Confidence 999999999997 789999999999955 59 99999999999999999998
No 2
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=98.41 E-value=5.1e-07 Score=69.02 Aligned_cols=58 Identities=26% Similarity=0.337 Sum_probs=42.2
Q ss_pred CceEEeeCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCCCC--CCCCcchhhhHHHHHHH
Q 036780 89 GEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNN--APNIGWLIEGIADFVRL 153 (231)
Q Consensus 89 ~GVA~t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~~g--~~aP~~liEGIADyVRl 153 (231)
.||++...+.|.+.. ... -.+.+..+|.||++|.|+.+-.+ ...|.|+.||+|+|+--
T Consensus 3 ~G~~~~~~~~i~~~~---~~~----~~~~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~ 62 (128)
T PF13485_consen 3 GGVYYPGFNRIVVYF---QGS----DEDWLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEG 62 (128)
T ss_pred eEEEecCCCEEEEec---CCC----CHHHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhc
Confidence 578887677776432 122 12334589999999999986665 34999999999999974
No 3
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=97.21 E-value=0.00039 Score=52.23 Aligned_cols=53 Identities=25% Similarity=0.369 Sum_probs=36.8
Q ss_pred CCCeEEEEEecc------CCCceEEeeCCeEEEcchhhh-cCCchhhhhHHHHHHHHhhhhhhccC
Q 036780 75 NIPQVDLFIDDM------KPGEIAFTSNNGIHYGDDFIQ-NIPVDLIKQEFSGVMYHEMTHVWQWN 133 (231)
Q Consensus 75 ~v~~Vtl~l~d~------~~~GVA~t~g~~I~~s~~~i~-~~~~d~~~~ei~Gvl~HE~~Hv~Q~~ 133 (231)
+...|++..... .+.-.|+|.|+.|+|.+.-.. +.+.+ ..+|.||++|++|..
T Consensus 17 dl~~Vrvh~~~~a~~~~~~~~A~A~T~G~~I~f~~g~~~~~s~~~------~~llaHEl~Hv~Qq~ 76 (79)
T PF13699_consen 17 DLSDVRVHTGPAASRAAAALGARAFTVGNDIYFAPGKYNPDSPEG------RALLAHELAHVVQQR 76 (79)
T ss_pred CccceEEEeCCchhhhhhccCCeEEEECCEEEEcCCCcCCCCCCc------chhHhHHHHHHHhhc
Confidence 356677766511 124479999999999776433 33334 579999999999964
No 4
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=96.64 E-value=0.0041 Score=50.73 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=38.0
Q ss_pred EEEEEe-cc-CCCceEEeeCC---eEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCC
Q 036780 79 VDLFID-DM-KPGEIAFTSNN---GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNG 134 (231)
Q Consensus 79 Vtl~l~-d~-~~~GVA~t~g~---~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~ 134 (231)
+++++. .+ .--|.....+. +|.+|+.++...+ ..++..+|.|||+|.|+|.-
T Consensus 20 ~~i~~~~~~~~~~G~~~~~~~~~~~I~ls~~~~~~~~----~~~~~~tL~HEm~H~~~~~~ 76 (157)
T PF10263_consen 20 IPITWSKRMKRTAGRCRYKRRSPCEIRLSPKLLDRNP----EEELIDTLLHEMAHAAAYVF 76 (157)
T ss_pred eEEEEECCCCCceEEEEECCCCceEEEECHHHHHhhH----HHHHHHHHHHHHHHHHhhhc
Confidence 666666 44 11355544555 8999999998853 45899999999999999744
No 5
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=96.58 E-value=0.017 Score=52.94 Aligned_cols=98 Identities=22% Similarity=0.310 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEEEe-ccCCCceEEeeCCeEEEcchhhhcCC---chhhhhHHHHHHHH
Q 036780 49 YAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFID-DMKPGEIAFTSNNGIHYGDDFIQNIP---VDLIKQEFSGVMYH 124 (231)
Q Consensus 49 ~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~l~-d~~~~GVA~t~g~~I~~s~~~i~~~~---~d~~~~ei~Gvl~H 124 (231)
++.+....+..+.+..|..+- |..+..++.- ++ ..-+.-.=+-|.++.+++-..+ ....+.++..++.|
T Consensus 229 ~~~~~~~~~l~~~~~~~g~~y-----p~~k~~~v~~p~~--~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iah 301 (390)
T PF01433_consen 229 FALDIAPKALEYYEEYFGIPY-----PFKKLDIVAVPDF--PFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAH 301 (390)
T ss_dssp HHHHHHHHHHHHHHHHHTS-------SSSEEEEEEEST---SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHhhccccc-----eecceeEEEEecc--ccccccccccccccccccccCcccccchhhhhhHHHHHH
Confidence 455666667777777774332 3446666544 43 2123323345777777663322 22346788899999
Q ss_pred hhhhhhccCCCCC----CCCcchhhhHHHHHHHhh
Q 036780 125 EMTHVWQWNGNNA----PNIGWLIEGIADFVRLKA 155 (231)
Q Consensus 125 E~~Hv~Q~~~~g~----~aP~~liEGIADyVRl~a 155 (231)
||+|-|- |.-. ..--||-||+|.|.....
T Consensus 302 ElahqWf--Gn~vt~~~w~d~WL~Eg~a~y~~~~~ 334 (390)
T PF01433_consen 302 ELAHQWF--GNLVTPKWWSDLWLNEGFATYLEYLI 334 (390)
T ss_dssp HHHTTTB--TTTEEESSGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--ccCCccccchhhhHHHHHHHHHHHHh
Confidence 9999763 4332 123589999999997753
No 6
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=96.33 E-value=0.11 Score=53.84 Aligned_cols=169 Identities=18% Similarity=0.318 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEE-EeccCCCceEEeeCCeEEEcchhhhcCC-chhhhhHHHHHHHHhh
Q 036780 49 YAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLF-IDDMKPGEIAFTSNNGIHYGDDFIQNIP-VDLIKQEFSGVMYHEM 126 (231)
Q Consensus 49 ~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~-l~d~~~~GVA~t~g~~I~~s~~~i~~~~-~d~~~~ei~Gvl~HE~ 126 (231)
++.++...+..+.+..|..+=|. .+..++ +.++ .+-|.-.=+-|.++..++-... .+..+..+..|+.|||
T Consensus 223 ~al~~~~~~l~~~e~~fg~pYP~-----~k~d~V~vP~f--~~GaMEn~Glit~~e~~l~~~~~~~~~~~~~~~viaHEl 295 (831)
T TIGR02412 223 AIFTITRQGLAFFHRKFGYPYPF-----KKYDQIFVPEF--NAGAMENAGCVTFAENFLHRAEATRAEKENRAGVILHEM 295 (831)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCc-----ccCCEEEcCCC--CCCcccccceeeechhhccCCcCCHHHHHHHHHHHHHHH
Confidence 45566677778888887543333 233332 2333 2113322346777766663321 1223455778999999
Q ss_pred hhhhccCCCCC----CCCcchhhhHHHHHHHhhC--cCC--CCCC-------------------CCCC---------CCC
Q 036780 127 THVWQWNGNNA----PNIGWLIEGIADFVRLKAN--YVP--EGWA-------------------KPGE---------GTM 170 (231)
Q Consensus 127 ~Hv~Q~~~~g~----~aP~~liEGIADyVRl~ag--~~~--~~w~-------------------~p~~---------g~~ 170 (231)
+|-| -|+-. ..--||-||.|.|.-..+= ..| ..|. .|-. ...
T Consensus 296 AHqW--FGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~ 373 (831)
T TIGR02412 296 AHMW--FGDLVTMRWWNDLWLNESFAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVADLADALSN 373 (831)
T ss_pred HHHH--hCCEeccccccchhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCCHHHHHHh
Confidence 9977 34332 0234899999999865421 011 1110 1110 011
Q ss_pred cc-cCcchhHhHHHHHHhc-cCC-cHHHHHHHHHhcc-CC----HHHH---HHHhCCCHHHHHHHHHH
Q 036780 171 WN-QGHSSVAARFLDYCND-LRN-GFVAELNKKMRDG-YN----DNFF---MELLGKSIDQLWNDYKA 227 (231)
Q Consensus 171 wd-~gY~~~TA~FL~wle~-~~~-gfV~~LN~~mr~~-ys----~~~~---~~~~G~~v~~LW~eY~~ 227 (231)
.+ -.| .-.|-+|.-|+. .+. .|-+-|..=++.. |. +++| .+..|+++.++++.+-.
T Consensus 374 fd~isY-~KGa~vL~mL~~~lGee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~dl~~~~~~W~~ 440 (831)
T TIGR02412 374 FDGITY-AKGASVLKQLVAWVGEEAFFAGVNAYFKRHAFGNATLDDLIDSLAKASGRDLSAWSDAWLE 440 (831)
T ss_pred ccCccc-hhHHHHHHHHHHHHCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 22 467 788888888884 343 3444444444332 43 3444 55789999998887654
No 7
>PRK04860 hypothetical protein; Provisional
Probab=96.17 E-value=0.0073 Score=51.14 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=40.0
Q ss_pred eEEEEEeccCCCceEEeeCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhcc
Q 036780 78 QVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQW 132 (231)
Q Consensus 78 ~Vtl~l~d~~~~GVA~t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~ 132 (231)
.|++..+--. .|.|.-..++|.|||..+...+. .++.+||.|||+|.+.|
T Consensus 28 ~~~f~~R~rt-aG~~~l~~~~I~~Np~ll~~~~~----~~l~~~v~HEl~H~~~~ 77 (160)
T PRK04860 28 KVSYTQRGTS-AGTAWLQSNEIRLNPVLLLENQQ----AFIDEVVPHELAHLLVY 77 (160)
T ss_pred EEEEeecchh-hcchhHhcCCeeeCHHHHhhCcH----HHHHhHHHHHHHHHHHH
Confidence 6777776542 56777667899999999988753 46889999999999988
No 8
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=96.13 E-value=0.005 Score=51.94 Aligned_cols=89 Identities=12% Similarity=0.081 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEEEeccCCCceEEeeCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhh
Q 036780 50 AKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHV 129 (231)
Q Consensus 50 a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~l~d~~~~GVA~t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv 129 (231)
-.+.+.+|+.. |+. +.+-.++.+..+-.. .|+||=.-++|.|||.++..+.. +.|.+|+-||++|-
T Consensus 7 L~~~~~~as~~----~~r-----~~~~p~~~~n~Rg~t-aG~ayL~~~~I~lNP~ll~en~~----~f~~~vV~HELaHl 72 (156)
T COG3091 7 LQQCVEQASLK----FFR-----KFFRPKASYNQRGRT-AGGAYLLKSEIRLNPKLLEENGE----DFIEQVVPHELAHL 72 (156)
T ss_pred HHHHHHHHHHH----hcC-----CCCCcceehhhhhhh-cchhhccccccccCHHHHHHccH----HHHHHHHHHHHHHH
Confidence 34666666654 221 112235666666542 69999776699999999998854 47899999999998
Q ss_pred hccCCCCCCCCcchhhhHHHHHHHhhCc
Q 036780 130 WQWNGNNAPNIGWLIEGIADFVRLKANY 157 (231)
Q Consensus 130 ~Q~~~~g~~aP~~liEGIADyVRl~ag~ 157 (231)
.-|.-.|...|-+ .||=.+....
T Consensus 73 ~ly~~~gr~~phg-----~ewk~lm~qV 95 (156)
T COG3091 73 HLYQEFGRYKPHG-----KEWKLLMQQV 95 (156)
T ss_pred HHHHHcCCCCCCc-----hhHHHHHHHh
Confidence 7664444336654 4666555443
No 9
>PF13203 DUF2201_N: Putative metallopeptidase domain
Probab=95.82 E-value=0.011 Score=53.18 Aligned_cols=38 Identities=24% Similarity=0.469 Sum_probs=32.4
Q ss_pred ceEEeeCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhc
Q 036780 90 EIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQ 131 (231)
Q Consensus 90 GVA~t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q 131 (231)
..++|.|..|.|||.|+.+.+ ..|+.+||.||+.||.-
T Consensus 36 ~t~~tDg~~l~~nP~~~~~l~----~~~~~~~l~HevlH~~~ 73 (292)
T PF13203_consen 36 PTAATDGRRLYYNPEFLESLS----PEERVGLLLHEVLHCLL 73 (292)
T ss_pred ceeeEcCcEEEECcHHHhcCC----HHHHHHHHHHHHHHHHc
Confidence 567888999999999998875 34788999999999983
No 10
>PRK04351 hypothetical protein; Provisional
Probab=95.67 E-value=0.034 Score=46.57 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=41.5
Q ss_pred eEEEEEeccCCCceEE-eeCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccC-CCCCCCCc
Q 036780 78 QVDLFIDDMKPGEIAF-TSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWN-GNNAPNIG 141 (231)
Q Consensus 78 ~Vtl~l~d~~~~GVA~-t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~-~~g~~aP~ 141 (231)
+|++..+-. -.|.+| -....|.|||..+..++. .++.+||.|||+|...|. |.|. .|.
T Consensus 25 ~v~~n~Rlr-ttgG~~~l~~~~I~lnp~ll~~~~~----~~l~~vv~HElcH~~~~~~g~g~-~h~ 84 (149)
T PRK04351 25 QAYFNKRLR-TTGGRYLLKDHHIEFNPKMLEEYGL----EELIGIIKHELCHYHLHLEGKGY-QHR 84 (149)
T ss_pred EEEEeccch-hhhheeecCCCeEEeCHHHHhhccH----HHHHhhHHHHHHHHHHHHHCCCC-CCC
Confidence 677665532 146666 456799999999988764 368899999999998874 4443 443
No 11
>PRK03072 heat shock protein HtpX; Provisional
Probab=95.19 E-value=0.03 Score=51.08 Aligned_cols=52 Identities=21% Similarity=0.420 Sum_probs=36.6
Q ss_pred CeEEEEEeccCCCceEEeeCC-----eEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCCC
Q 036780 77 PQVDLFIDDMKPGEIAFTSNN-----GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGN 135 (231)
Q Consensus 77 ~~Vtl~l~d~~~~GVA~t~g~-----~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~~ 135 (231)
.+| +++++- ..-|+++|. .|.++...++..+ .+|+.|||.||+.|+-+++-.
T Consensus 88 p~v-yv~~~~--~~NAFa~G~~~~~~~v~vt~gLl~~l~----~~El~aVlAHElgHi~~~d~~ 144 (288)
T PRK03072 88 PRL-YISPTA--APNAFATGRNPRNAAVCCTEGILQILN----ERELRGVLGHELSHVYNRDIL 144 (288)
T ss_pred CCE-EEecCC--CCceEEecCCCCCcEEEecHHHHHhCC----HHHHHHHHHHHHHHHhcCCHH
Confidence 344 334443 345888774 4777888777764 469999999999999986643
No 12
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=94.98 E-value=0.016 Score=47.65 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=35.2
Q ss_pred eEEEEEeccCCCceEEee-CCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccC
Q 036780 78 QVDLFIDDMKPGEIAFTS-NNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWN 133 (231)
Q Consensus 78 ~Vtl~l~d~~~~GVA~t~-g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~ 133 (231)
.|++.-+ |.-.|-++.. ..+|.||+..+...+. .++.+||.|||+|.+.+.
T Consensus 23 ~i~w~~r-~~~~~G~~~~~~~~I~ln~~l~~~~~~----~~l~~~l~HEm~H~~~~~ 74 (146)
T smart00731 23 KVVWNKR-LRKTGGRCLLKSAEIRLNPKLLTENGR----DRLRETLLHELCHAALYL 74 (146)
T ss_pred EEEEehh-hhhhhHHhhcCCCEEEeCHHHHhhccH----HHHHhhHHHHHHHHHHHH
Confidence 5555533 2112334443 5699999999987653 357889999999999873
No 13
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=94.98 E-value=0.069 Score=45.17 Aligned_cols=41 Identities=20% Similarity=0.375 Sum_probs=31.9
Q ss_pred EEeeC-Ce---EEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCCCC
Q 036780 92 AFTSN-NG---IHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNN 136 (231)
Q Consensus 92 A~t~g-~~---I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~~g 136 (231)
|++.| +. |.++...+...+ .+|+.+||.||+.|+.+++..-
T Consensus 63 A~~~g~~~~~~I~v~~~ll~~~~----~~el~aVlaHElgH~~~~h~~~ 107 (226)
T PF01435_consen 63 AFATGGGPRKRIVVTSGLLESLS----EDELAAVLAHELGHIKHRHILK 107 (226)
T ss_dssp EEEETTTC--EEEEEHHHHHHSS----HHHHHHHHHHHHHHHHTTHCCC
T ss_pred EEEEccCCCcEEEEeChhhhccc----HHHHHHHHHHHHHHHHcCCcch
Confidence 56554 34 999999986654 4599999999999999876644
No 14
>PRK01345 heat shock protein HtpX; Provisional
Probab=94.88 E-value=0.047 Score=50.59 Aligned_cols=41 Identities=27% Similarity=0.461 Sum_probs=33.2
Q ss_pred ceEEeeCC-----eEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCC
Q 036780 90 EIAFTSNN-----GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNG 134 (231)
Q Consensus 90 GVA~t~g~-----~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~ 134 (231)
--|+++|. .|.++...++..+ .+|+.+||.|||.|+-+++.
T Consensus 95 ~NAFa~G~~~~~~~V~vt~gLL~~L~----~dEL~aVlAHElgHi~~~d~ 140 (317)
T PRK01345 95 PNAFATGRNPENAAVAATTGLLQRLS----PEEVAGVMAHELAHVKNRDT 140 (317)
T ss_pred cceEEecCCCCCeEEEechHHHhhCC----HHHHHHHHHHHHHHHHcCCH
Confidence 35777753 6999999998774 35999999999999998664
No 15
>PRK05457 heat shock protein HtpX; Provisional
Probab=94.80 E-value=0.056 Score=49.32 Aligned_cols=53 Identities=21% Similarity=0.410 Sum_probs=37.6
Q ss_pred CCCeEEEEEeccCCCceEEeeCC-----eEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCC
Q 036780 75 NIPQVDLFIDDMKPGEIAFTSNN-----GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNG 134 (231)
Q Consensus 75 ~v~~Vtl~l~d~~~~GVA~t~g~-----~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~ 134 (231)
|..+|-+. ++- .--|+++|. .|.++...++..+ ++|+.||+.||+.|+-.++-
T Consensus 93 p~p~v~v~-~~~--~~NAfa~G~~~~~~~V~vt~gLl~~L~----~~El~aVlAHElgHi~~~d~ 150 (284)
T PRK05457 93 GMPEVAIY-HSP--EINAFATGASKNNSLVAVSTGLLQNMS----RDEVEAVLAHEISHIANGDM 150 (284)
T ss_pred CCCCEEEE-eCC--CceEEEecCCCCCeEEEeehHHhhhCC----HHHHHHHHHHHHHHHHcCCH
Confidence 34455433 332 346777762 5789988888874 46999999999999988653
No 16
>PRK03001 M48 family peptidase; Provisional
Probab=94.78 E-value=0.055 Score=48.97 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=33.2
Q ss_pred ceEEeeCC-----eEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCC
Q 036780 90 EIAFTSNN-----GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNG 134 (231)
Q Consensus 90 GVA~t~g~-----~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~ 134 (231)
--|++.|. .|.++...++..+ .+|+.+||.||+.|+-.++-
T Consensus 95 ~NAfa~G~~~~~~~Ivvt~gLl~~l~----~~El~aVlAHElgHi~~~h~ 140 (283)
T PRK03001 95 PNAFATGRNPEHAAVAATTGILRVLS----EREIRGVMAHELAHVKHRDI 140 (283)
T ss_pred cceEEecCCCCCeEEEecHHHHhhCC----HHHHHHHHHHHHHHHhCCCh
Confidence 35777652 6999999998874 46999999999999997654
No 17
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.69 E-value=0.088 Score=51.60 Aligned_cols=50 Identities=24% Similarity=0.374 Sum_probs=39.5
Q ss_pred eEEEEEeccCCCce-EEe-eCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhcc
Q 036780 78 QVDLFIDDMKPGEI-AFT-SNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQW 132 (231)
Q Consensus 78 ~Vtl~l~d~~~~GV-A~t-~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~ 132 (231)
.+||++-+- +.+ |++ .|+.|.+++..+-... -..|+.|||.||+.||-|.
T Consensus 93 ~f~f~lV~d--~~iNAFA~~Gg~v~vntGLll~ae---~esElagViAHEigHv~qr 144 (484)
T COG4783 93 PFTFFLVND--DSINAFATPGGYVVVNTGLLLTAE---NESELAGVIAHEIGHVAQR 144 (484)
T ss_pred CeEEEEecC--CccchhhcCCceEEEehHHHHhcC---CHHHHHHHHHHHHHHHhhh
Confidence 478877654 666 665 4999999999887652 3568999999999999984
No 18
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=94.60 E-value=0.22 Score=42.75 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHhhhhhhccCCCCCCCC-------cchhhhHHHHHHH-hhCcCC-CCCC
Q 036780 114 IKQEFSGVMYHEMTHVWQWNGNNAPNI-------GWLIEGIADFVRL-KANYVP-EGWA 163 (231)
Q Consensus 114 ~~~ei~Gvl~HE~~Hv~Q~~~~g~~aP-------~~liEGIADyVRl-~ag~~~-~~w~ 163 (231)
...+|..+|.||..|++++...+. .| .-+.||+|++.-. ..|-.+ +.|.
T Consensus 61 ~~~~l~~~iaHE~hH~~r~~~~~~-~~~~~TLld~~I~EGlAe~f~~~~~g~~~~~~w~ 118 (195)
T PF10026_consen 61 SLEELPALIAHEYHHNCRYEQIGW-DPEDTTLLDSLIMEGLAEYFAEELYGEEYLGPWV 118 (195)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCC-CCCCCCHHHHHHHhhHHHHHHHHHcCCCCCchhh
Confidence 455899999999999998876553 22 3478999998644 445433 4444
No 19
>PRK04897 heat shock protein HtpX; Provisional
Probab=94.18 E-value=0.069 Score=48.92 Aligned_cols=53 Identities=25% Similarity=0.495 Sum_probs=38.6
Q ss_pred CCCeEEEEEeccCCCceEEeeC-----CeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCC
Q 036780 75 NIPQVDLFIDDMKPGEIAFTSN-----NGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNG 134 (231)
Q Consensus 75 ~v~~Vtl~l~d~~~~GVA~t~g-----~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~ 134 (231)
|..+|-+ +++- ..-|+++| ..|.++...++..+ ++|+.+||.||+.|+-.++-
T Consensus 96 p~p~v~v-~~~~--~~NAfa~G~~~~~~~v~vt~gLl~~l~----~~El~aVlAHElgHi~~~d~ 153 (298)
T PRK04897 96 PMPRVFI-IDDP--SPNAFATGSSPKNAAVAVTTGLLAIMN----REELEGVIGHEISHIRNYDI 153 (298)
T ss_pred CCCcEEE-ecCC--CCceEEeccCCCCcEEEeehHHHhhCC----HHHHHHHHHHHHHHHhcCCH
Confidence 3445643 3443 45688776 26889988888874 46999999999999987654
No 20
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.19 Score=52.63 Aligned_cols=106 Identities=25% Similarity=0.368 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEE-EeccCCCceEEeeCCeEEEcchhhhc---CCchhhhhHHHHHHH
Q 036780 48 EYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLF-IDDMKPGEIAFTSNNGIHYGDDFIQN---IPVDLIKQEFSGVMY 123 (231)
Q Consensus 48 ~~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~-l~d~~~~GVA~t~g~~I~~s~~~i~~---~~~d~~~~ei~Gvl~ 123 (231)
.+|-++-.....|.+.+|.-+- |-+ ++-++ |-|+ ..-|.-.-+-|++....+-- .+....+..|.+|+.
T Consensus 257 ~~al~~~~~~L~~~e~~f~i~y--PLp---K~D~iavPdf--~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIa 329 (882)
T KOG1046|consen 257 QFALEVATKVLEFYEDYFGIPY--PLP---KLDLVAVPDF--SAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIA 329 (882)
T ss_pred HHHHHHHHHHHHHHHHHhCCCC--CCc---cccEEecCCc--cccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHH
Confidence 4455665666777777775333 223 34433 2243 22233233455555444422 222236888999999
Q ss_pred HhhhhhhccCCCCCCCCc----chhhhHHHHHHHhh-CcCCCCC
Q 036780 124 HEMTHVWQWNGNNAPNIG----WLIEGIADFVRLKA-NYVPEGW 162 (231)
Q Consensus 124 HE~~Hv~Q~~~~g~~aP~----~liEGIADyVRl~a-g~~~~~w 162 (231)
||++|-| -|+=....+ ||=||.|+|+-..+ ....+.|
T Consensus 330 HElAHQW--FGNLVTm~wW~dLWLnEGfAt~~~~~~v~~~~p~~ 371 (882)
T KOG1046|consen 330 HELAHQW--FGNLVTMKWWNDLWLNEGFATYVEYLAVDHLFPEW 371 (882)
T ss_pred HHHHHHH--hcCcccHhhhhhhhhcccHHHHHHHHhhccCCcch
Confidence 9999955 454321444 59999999998876 2234555
No 21
>PRK03982 heat shock protein HtpX; Provisional
Probab=94.01 E-value=0.11 Score=47.19 Aligned_cols=41 Identities=22% Similarity=0.409 Sum_probs=32.9
Q ss_pred ceEEeeC-----CeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCC
Q 036780 90 EIAFTSN-----NGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNG 134 (231)
Q Consensus 90 GVA~t~g-----~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~ 134 (231)
--|+++| ..|.++...++..+ ++|+.+||.||+.|+-..+.
T Consensus 96 ~NAfa~G~~~~~~~V~vt~gLl~~l~----~~El~AVlAHElgHi~~~h~ 141 (288)
T PRK03982 96 PNAFATGRDPKHAVVAVTEGILNLLN----EDELEGVIAHELTHIKNRDT 141 (288)
T ss_pred cceEEeccCCCCeEEEeehHHHhhCC----HHHHHHHHHHHHHHHHcCCH
Confidence 3678775 25779999998774 46999999999999998654
No 22
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.055 Score=48.08 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=29.2
Q ss_pred CeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCCC
Q 036780 97 NGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGN 135 (231)
Q Consensus 97 ~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~~ 135 (231)
..|.++...++..+ .+|+.+||.||+.|+-..+..
T Consensus 140 ~~V~vt~gLl~~l~----~dEl~aVlaHElgHi~~rd~~ 174 (302)
T COG0501 140 GRVVVTTGLLDLLN----DDELEAVLAHELGHIKNRHTL 174 (302)
T ss_pred eeEEecHHHHhhCC----HHHHHHHHHHHHHHHhcccHH
Confidence 49999999999664 459999999999999875543
No 23
>PRK02391 heat shock protein HtpX; Provisional
Probab=93.79 E-value=0.096 Score=48.11 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=33.6
Q ss_pred CceEEeeCC-----eEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCC
Q 036780 89 GEIAFTSNN-----GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNG 134 (231)
Q Consensus 89 ~GVA~t~g~-----~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~ 134 (231)
..-|+++|. .|.++...++..+ .+|+.+|+.||+.|+-+.+-
T Consensus 103 ~~NAfa~G~~~~~~~V~vt~gLl~~L~----~~El~aVlaHElgHi~~~di 149 (296)
T PRK02391 103 VPNAFATGRSPKNAVVCVTTGLMRRLD----PDELEAVLAHELSHVKNRDV 149 (296)
T ss_pred CCceEEecCCCCCcEEEecHHHHhhCC----HHHHHHHHHHHHHHHHcCCH
Confidence 457888763 5888888888774 46999999999999998764
No 24
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=93.54 E-value=1.1 Score=42.84 Aligned_cols=113 Identities=13% Similarity=0.125 Sum_probs=65.6
Q ss_pred hhHHHHHHHHhhhhhhccCCCC------CCCCcchhhhHHHHHHHhhCcCC------------CCCCC------------
Q 036780 115 KQEFSGVMYHEMTHVWQWNGNN------APNIGWLIEGIADFVRLKANYVP------------EGWAK------------ 164 (231)
Q Consensus 115 ~~ei~Gvl~HE~~Hv~Q~~~~g------~~aP~~liEGIADyVRl~ag~~~------------~~w~~------------ 164 (231)
...+.+.|.||..|+.-++-++ ..-.-||=||++...-.-++..+ +.|..
T Consensus 136 ~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~i~d~R~~~y~~~~~~~~~~~l~~ 215 (366)
T PF10460_consen 136 PDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNNIRDSRIPYYNNYTSGNYNCSLTA 215 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCccccccHHHHhhccccCCCcceee
Confidence 3457899999999999665432 11578999998866433332221 01111
Q ss_pred -CCCCCCcccCcchhHhHHHHHHh-ccCCcHHHHHHHHHhccCCHHHH----HHH-hCCCHHHHHHHHHHHh
Q 036780 165 -PGEGTMWNQGHSSVAARFLDYCN-DLRNGFVAELNKKMRDGYNDNFF----MEL-LGKSIDQLWNDYKAKY 229 (231)
Q Consensus 165 -p~~g~~wd~gY~~~TA~FL~wle-~~~~gfV~~LN~~mr~~ys~~~~----~~~-~G~~v~~LW~eY~~~~ 229 (231)
+..+..+ .+| ..+.-|..||. ..+.+|++++=..-...=+.+.. +.+ .|.+.++|-.++..+.
T Consensus 216 w~~~g~~l-~sY-s~s~~Fg~~L~rQ~G~~~~~~~l~~~~~tds~avl~aa~~~~~~~~sf~~~l~~w~~A~ 285 (366)
T PF10460_consen 216 WSSFGDSL-ASY-SSSYSFGAYLYRQYGGDFYKKLLTNSSSTDSEAVLDAAIKQAGPGNSFGELLRRWGVAL 285 (366)
T ss_pred cCCCcccc-ccc-hhHHHHHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 1112222 469 89999999998 67788877643322111111222 223 2467777777776654
No 25
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=93.04 E-value=0.28 Score=51.35 Aligned_cols=96 Identities=20% Similarity=0.304 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEE-EeccCCCceEEeeCCeEEEcchhhhcC---CchhhhhHHHHHHH
Q 036780 48 EYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLF-IDDMKPGEIAFTSNNGIHYGDDFIQNI---PVDLIKQEFSGVMY 123 (231)
Q Consensus 48 ~~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~-l~d~~~~GVA~t~g~~I~~s~~~i~~~---~~d~~~~ei~Gvl~ 123 (231)
+++.+.+..+..+.+..|.++=|. + +..++ +.+++.. |.-.-+-|.|+..++-.. ..+.-...+.+|+.
T Consensus 216 ~~al~~~~~~L~~~E~~fG~pYPl--~---k~diVavpdf~~G--aMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIa 288 (863)
T TIGR02414 216 DHAMESLKKAMKWDEEVFGLEYDL--D---IFMIVAVDDFNMG--AMENKGLNIFNSKYVLADPETATDADYERIESVIA 288 (863)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCh--h---hccEEecCCCCCc--cccccceeccccceEEeCCCCCCHHHHHHHHHHHH
Confidence 456778888888888888643322 2 33333 2333112 221122444554444211 12323456789999
Q ss_pred HhhhhhhccCCCCCCCCc----chhhhHHHHHH
Q 036780 124 HEMTHVWQWNGNNAPNIG----WLIEGIADFVR 152 (231)
Q Consensus 124 HE~~Hv~Q~~~~g~~aP~----~liEGIADyVR 152 (231)
||++|-| .|+-..+-+ ||-||.|.|.-
T Consensus 289 HElaHqW--fGNlVT~~~W~~LWLnEGfAty~e 319 (863)
T TIGR02414 289 HEYFHNW--TGNRVTCRDWFQLSLKEGLTVFRD 319 (863)
T ss_pred HHHHHHH--hcceeeecchhhhhhhhhHHHHHH
Confidence 9999966 455431222 58999998763
No 26
>PRK02870 heat shock protein HtpX; Provisional
Probab=93.01 E-value=0.14 Score=47.99 Aligned_cols=52 Identities=25% Similarity=0.403 Sum_probs=37.5
Q ss_pred CCeEEEEEeccCCCceEEeeC-----CeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCC
Q 036780 76 IPQVDLFIDDMKPGEIAFTSN-----NGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNG 134 (231)
Q Consensus 76 v~~Vtl~l~d~~~~GVA~t~g-----~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~ 134 (231)
..+|-+ +++- .--|+++| ..|.++...++..+ ++|+.|||.|||.|+-.++-
T Consensus 133 ~p~V~v-i~~~--~~NAFA~G~~~~~~~Ivvt~GLL~~L~----~dEL~aVlAHELgHik~~di 189 (336)
T PRK02870 133 MPKVYI-IDAP--YMNAFASGYSEKSAMVAITTGLLEKLD----RDELQAVMAHELSHIRHGDI 189 (336)
T ss_pred CCeEEE-EcCC--CCceEEecCCCCCcEEEEehHHhhhCC----HHHHHHHHHHHHHHHHcccH
Confidence 345544 3432 34577765 38999999998774 46999999999999976554
No 27
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=92.99 E-value=0.058 Score=44.17 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=24.0
Q ss_pred HHHHHhhhhhhccCCCC----CCCCcchhhhHHHHH
Q 036780 120 GVMYHEMTHVWQWNGNN----APNIGWLIEGIADFV 151 (231)
Q Consensus 120 Gvl~HE~~Hv~Q~~~~g----~~aP~~liEGIADyV 151 (231)
..+.||.+|-.-.|-.- ...|-|+.||||.|-
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yF 38 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADWPRWVSEGLATYF 38 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCCchHHHHhHHHHc
Confidence 47899999987543321 128999999999984
No 28
>PRK01265 heat shock protein HtpX; Provisional
Probab=91.50 E-value=0.28 Score=45.90 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=31.3
Q ss_pred ceEEeeC-----CeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccC
Q 036780 90 EIAFTSN-----NGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWN 133 (231)
Q Consensus 90 GVA~t~g-----~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~ 133 (231)
.-|+++| ..|.++...++..+ ++|+.+|+.||+.|+-..+
T Consensus 111 ~NAfa~G~~~~~~~Ivvt~gLl~~l~----~~El~aVlAHElgHik~~d 155 (324)
T PRK01265 111 PNAFAYGSPIAGKRIAITLPLLKILN----RDEIKAVAGHELGHLKHRD 155 (324)
T ss_pred CCeEEeccCCCCCEEEEehHHHhhCC----HHHHHHHHHHHHHHHHccc
Confidence 4566654 38999999998875 4699999999999976543
No 29
>PRK14015 pepN aminopeptidase N; Provisional
Probab=90.74 E-value=0.72 Score=48.45 Aligned_cols=96 Identities=21% Similarity=0.283 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEEEeccCCCceEEeeCCeEEEcchhhhcCC---chhhhhHHHHHHHH
Q 036780 48 EYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIP---VDLIKQEFSGVMYH 124 (231)
Q Consensus 48 ~~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~l~d~~~~GVA~t~g~~I~~s~~~i~~~~---~d~~~~ei~Gvl~H 124 (231)
+++.+.+..+..+.+.+|.++=|. +...-| .+.+++.. |.-.-+-|.|+..++-..+ .+.-...+.+|+.|
T Consensus 229 ~~al~~~~~~L~~~E~~FG~pYP~--~k~diV--avp~f~~G--aMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaH 302 (875)
T PRK14015 229 DHAMDSLKKSMKWDEERFGLEYDL--DIFMIV--AVDDFNMG--AMENKGLNIFNSKYVLADPETATDADYERIESVIAH 302 (875)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCh--hhhCEE--eCCCCCCc--ccccccccccccceEecCcccCCHHHHHHHHHHHHH
Confidence 345667777888888888643322 222222 23343112 2222224445555442111 12123457899999
Q ss_pred hhhhhhccCCCCCCCC----cchhhhHHHHH
Q 036780 125 EMTHVWQWNGNNAPNI----GWLIEGIADFV 151 (231)
Q Consensus 125 E~~Hv~Q~~~~g~~aP----~~liEGIADyV 151 (231)
|++|-| .|+...+- -||-||.|-|.
T Consensus 303 ElaHqW--FGNlVT~~~W~dLWLnEGFAty~ 331 (875)
T PRK14015 303 EYFHNW--TGNRVTCRDWFQLSLKEGLTVFR 331 (875)
T ss_pred HHHHHH--HhCcceecchhhhhhhhHHHHHH
Confidence 999976 45554122 36899999887
No 30
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.
Probab=89.34 E-value=0.61 Score=42.01 Aligned_cols=104 Identities=14% Similarity=0.256 Sum_probs=62.1
Q ss_pred CeEEEEEeccCCCceEEeeC---CeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCCCCCCCCcchhhhHHHHHHH
Q 036780 77 PQVDLFIDDMKPGEIAFTSN---NGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNNAPNIGWLIEGIADFVRL 153 (231)
Q Consensus 77 ~~Vtl~l~d~~~~GVA~t~g---~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~~g~~aP~~liEGIADyVRl 153 (231)
+++.+.+.+. --..++.| -.|.++.+..++.++ .|+.-||.||++|+-+.|. +..-++..+..
T Consensus 158 ~~~~i~~s~~--i~sP~~~G~~~p~I~lP~~~~~~~~~----~el~~il~HEl~Hikr~D~--------~~~~l~~l~~~ 223 (299)
T PF05569_consen 158 RPIRIRVSSG--ISSPFVFGFLRPVIVLPESLLEDLSE----EELRAILLHELAHIKRRDL--------LWKLLAELLCA 223 (299)
T ss_pred CceEEEEcCC--CCCCeeecCcceEEEecCccccccCH----HHHHHHHHHHHHHHHCCCh--------HHHHHHHHHHH
Confidence 4566665543 22345556 389999888777753 3677899999999998776 44455555554
Q ss_pred hhCcCCCCCCCCCCCCCcccCcchhHhHHHHHHh-ccCCcHHHHHHHHHhccCCHH
Q 036780 154 KANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCN-DLRNGFVAELNKKMRDGYNDN 208 (231)
Q Consensus 154 ~ag~~~~~w~~p~~g~~wd~gY~~~TA~FL~wle-~~~~gfV~~LN~~mr~~ys~~ 208 (231)
- ||-.|.- | -...++-..+| ..|...++.+|..-+..|...
T Consensus 224 l------~WfnP~~-------~-~~~~~~~~~~E~~cD~~vl~~l~~~~~~~Y~~~ 265 (299)
T PF05569_consen 224 L------HWFNPLV-------W-LLRRRIRRDRELACDEAVLRNLGKEERKAYAET 265 (299)
T ss_pred H------HHhhHHH-------H-HHHHHHHHHHHHhhhHHHHHhcCchhHHHHHHH
Confidence 3 4545531 2 23334444555 456666666555444445443
No 31
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=88.43 E-value=1.8 Score=37.48 Aligned_cols=101 Identities=14% Similarity=0.166 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEEEeccCC-----CceEEeeCCeEEEcchhhhcCCchhhhhHHHHH
Q 036780 47 AEYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFIDDMKP-----GEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGV 121 (231)
Q Consensus 47 ~~~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~l~d~~~-----~GVA~t~g~~I~~s~~~i~~~~~d~~~~ei~Gv 121 (231)
.++|.++|......|..+.... +-.|.+ |..|.| -|.-+-.|.+|.+-.+.=.. ..=.--..|.+|
T Consensus 15 ~~~A~~lL~rlA~~v~pIM~~~----~~~V~~----L~E~~P~~~~llG~N~N~G~~I~lrLR~~~~-~~fl~~~~i~~t 85 (186)
T PF08325_consen 15 EEEALELLERLAADVKPIMRKH----GWRVGS----LEEFYPNGERLLGLNVNKGEKICLRLRTPDD-GGFLPYETILGT 85 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc----CcccCe----eeccCCCCCCCcceecCCCcEEEEEeCCCCC-CCEeeHHHHHHH
Confidence 4678888888877777666311 011111 222211 34444457788876554332 111124579999
Q ss_pred HHHhhhhhhccCCCCCCCCcchhhhH-HHHHHHhh-CcC
Q 036780 122 MYHEMTHVWQWNGNNAPNIGWLIEGI-ADFVRLKA-NYV 158 (231)
Q Consensus 122 l~HE~~Hv~Q~~~~g~~aP~~liEGI-ADyVRl~a-g~~ 158 (231)
+.|||+||+ +.+.+. .++-+..-| .++..+.. ||.
T Consensus 86 ~lHELaH~~-~~~H~~-~F~~l~~~l~~e~~~l~~~G~~ 122 (186)
T PF08325_consen 86 MLHELAHNV-HGPHDD-KFWKLLDELRKECEELDAKGYT 122 (186)
T ss_pred HHHHHHhcc-cCCccH-HHHHHHHHHHHHHHHHHhcCCc
Confidence 999999998 455665 555444333 23444444 554
No 32
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=88.27 E-value=0.46 Score=42.16 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=27.7
Q ss_pred HHHHHHhhhhhhcc-CCCCCCCCcchhhhHHHHHHH
Q 036780 119 SGVMYHEMTHVWQW-NGNNAPNIGWLIEGIADFVRL 153 (231)
Q Consensus 119 ~Gvl~HE~~Hv~Q~-~~~g~~aP~~liEGIADyVRl 153 (231)
-.+|.|||+|+|.+ +|... -|..+-|||...+.+
T Consensus 94 gsiLAHE~mHa~Lrl~g~~~-L~~~vEEGiCqvla~ 128 (212)
T PF12315_consen 94 GSILAHELMHAWLRLNGFPN-LSPEVEEGICQVLAY 128 (212)
T ss_pred hhHHHHHHHHHHhcccCCCC-CChHHHHHHHHHHHH
Confidence 45899999999986 44444 688999999998865
No 33
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=85.36 E-value=0.58 Score=38.14 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=22.7
Q ss_pred CeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCCCC
Q 036780 97 NGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNN 136 (231)
Q Consensus 97 ~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~~g 136 (231)
.=|.++|+|-++-. +.-|.||+.|+||+...|
T Consensus 66 ~~i~IDP~~~~KGC--------~~TL~HEL~H~WQ~RsYG 97 (141)
T PHA02456 66 GWIEIDPDYANKGC--------RDTLAHELNHAWQFRTYG 97 (141)
T ss_pred eEEEECCcccccch--------HHHHHHHHHHHHhhhccc
Confidence 35666676644433 347999999999987765
No 34
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=82.65 E-value=0.92 Score=45.56 Aligned_cols=33 Identities=33% Similarity=0.584 Sum_probs=23.8
Q ss_pred HHHHHHhhhhhhccCCCCC----CCCcchhhhHHHHHHH
Q 036780 119 SGVMYHEMTHVWQWNGNNA----PNIGWLIEGIADFVRL 153 (231)
Q Consensus 119 ~Gvl~HE~~Hv~Q~~~~g~----~aP~~liEGIADyVRl 153 (231)
..|+.|||+|.|= |+-. ..--||=||.|.|+-.
T Consensus 280 ~~viaHElAHqWf--GNlVT~~~W~d~WLnEGfaty~e~ 316 (601)
T TIGR02411 280 VDVIAHELAHSWS--GNLVTNCSWEHFWLNEGWTVYLER 316 (601)
T ss_pred hhhHHHHHHhhcc--CceeecCCchHHHHHhhHHHHHHH
Confidence 4799999999764 4432 1234899999999744
No 35
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=82.19 E-value=4.6 Score=42.31 Aligned_cols=171 Identities=18% Similarity=0.303 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEEEeccCCCceEEeeCCeEEEcchhhhcCC---chhhhhHHHHHHHH
Q 036780 48 EYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIP---VDLIKQEFSGVMYH 124 (231)
Q Consensus 48 ~~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~l~d~~~~GVA~t~g~~I~~s~~~i~~~~---~d~~~~ei~Gvl~H 124 (231)
.++-..+.....|.+..|..+-|-++ .-+.+.+++..| .=.-+-|.|...|+-..+ .|....-+.-|+.|
T Consensus 241 ~~~~~~~~~~~~~~e~~fg~~y~l~~-----~~V~v~~f~~Ga--MEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaH 313 (859)
T COG0308 241 KYALDETKRSIEFYEEYFGLPYALPI-----DIVAVPDFSAGA--MENWGLVTFREKYLLADPETATDSDYENVEEVIAH 313 (859)
T ss_pred hhhHHHHHHHhhhHHHhcCCCCCCcc-----cEEeccCCCCcc--ccccceeEEeeeEEeeCcccchhHHHHHHHHHHHH
Confidence 45566777777888887765544444 333344442111 111124455555442221 22233455669999
Q ss_pred hhhhhhccCCCCCCC----CcchhhhHHHHHHHh--hCcCCCCC----------------------CCCCC---------
Q 036780 125 EMTHVWQWNGNNAPN----IGWLIEGIADFVRLK--ANYVPEGW----------------------AKPGE--------- 167 (231)
Q Consensus 125 E~~Hv~Q~~~~g~~a----P~~liEGIADyVRl~--ag~~~~~w----------------------~~p~~--------- 167 (231)
|+.|-| .|+-.-+ --||=||.|-|+-.+ ..+.+.+| ..|-.
T Consensus 314 ElaHqW--fGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~~~~~~~~ei 391 (859)
T COG0308 314 ELAHQW--FGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIRVDVYDPKEI 391 (859)
T ss_pred HHhhhc--ccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhccccccCCcccCCCCccch
Confidence 999966 4442113 368999999996332 12222222 11211
Q ss_pred CCCcc-cCcchhHhHHHHHHhcc--CCcHHHHHHHHHhcc-C----CHHH---HHHHhCCCHHHHHHHHHHH
Q 036780 168 GTMWN-QGHSSVAARFLDYCNDL--RNGFVAELNKKMRDG-Y----NDNF---FMELLGKSIDQLWNDYKAK 228 (231)
Q Consensus 168 g~~wd-~gY~~~TA~FL~wle~~--~~gfV~~LN~~mr~~-y----s~~~---~~~~~G~~v~~LW~eY~~~ 228 (231)
.+.|| -.| .-.|..|.=++.+ ...|.+-|-.-++.. | .+++ ..+..|+++...+..|...
T Consensus 392 ~~~fD~i~Y-~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~sg~dl~~~~~~w~~q 462 (859)
T COG0308 392 NDFFDAIVY-EKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDASGKDLSAFFESWLSQ 462 (859)
T ss_pred hhhcchhhc-chhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHhC
Confidence 22344 246 5667777777732 334555455444432 2 3444 4677899999888777654
No 36
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=79.99 E-value=0.65 Score=37.74 Aligned_cols=41 Identities=24% Similarity=0.643 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhhhhccCCCCCC---------------CCcchhhhHHHHH----HHhhCcCC
Q 036780 117 EFSGVMYHEMTHVWQWNGNNAP---------------NIGWLIEGIADFV----RLKANYVP 159 (231)
Q Consensus 117 ei~Gvl~HE~~Hv~Q~~~~g~~---------------aP~~liEGIADyV----Rl~ag~~~ 159 (231)
+..|++.||..|.|. ++-.+ .--|+-||+-+|. -.++|+..
T Consensus 3 ~~l~l~sHEffH~Wn--vkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~RaGl~~ 62 (122)
T PF05299_consen 3 RFLGLLSHEFFHSWN--VKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVRAGLIS 62 (122)
T ss_pred chhhhhhhhcccccc--ceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHHcCCCC
Confidence 357999999999984 44220 2258999987775 34677643
No 37
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=79.48 E-value=7.4 Score=32.66 Aligned_cols=59 Identities=22% Similarity=0.257 Sum_probs=36.6
Q ss_pred EEEEeccCCCc--eEEeeCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCCCCCCCCcchhhhH
Q 036780 80 DLFIDDMKPGE--IAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNNAPNIGWLIEGI 147 (231)
Q Consensus 80 tl~l~d~~~~G--VA~t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~~g~~aP~~liEGI 147 (231)
.+.+++| .. -.++..+.|.||...+. .|.. -|.=|+.|||+|...-| .+. ..+.+++-+
T Consensus 131 ~i~ir~~--ksrWGsc~~~~~I~ln~~L~~-~P~~----~idYVvvHEL~Hl~~~n-Hs~-~Fw~~v~~~ 191 (205)
T PF01863_consen 131 KIKIRDM--KSRWGSCSSKGNITLNWRLVM-APPE----VIDYVVVHELCHLRHPN-HSK-RFWALVEKY 191 (205)
T ss_pred eEEEeeh--hhccccCCCCCcEEeeccccc-CCcc----HHHHHHHHHHHHhccCC-CCH-HHHHHHHHH
Confidence 3445677 32 12245679999988765 3322 24569999999999743 343 555555543
No 38
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=77.69 E-value=1.5 Score=37.71 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=32.3
Q ss_pred CCeEEEEEeccCCCceEEee-CCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhc
Q 036780 76 IPQVDLFIDDMKPGEIAFTS-NNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQ 131 (231)
Q Consensus 76 v~~Vtl~l~d~~~~GVA~t~-g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q 131 (231)
-+.|....-+.+..| .|.. ...|.+-.+++.+ +.++..+|+|||+|+|-
T Consensus 35 ~~~i~c~~C~~~~~G-gf~p~~~~I~lC~N~~~~------~~~l~~~l~HELIHayD 84 (173)
T PF09768_consen 35 PRHIKCEPCDSSVSG-GFDPSKKGIVLCQNRIRS------QGHLEDTLTHELIHAYD 84 (173)
T ss_pred CCCeEEEECcCCCcC-CccCCCCCEEEeeCCCCC------HHHHHHHHHHHHHHHHH
Confidence 345665555442112 2444 6689988888744 45688999999999994
No 39
>PF14891 Peptidase_M91: Effector protein
Probab=75.99 E-value=1.3 Score=37.36 Aligned_cols=12 Identities=42% Similarity=0.933 Sum_probs=10.8
Q ss_pred HHHHHhhhhhhc
Q 036780 120 GVMYHEMTHVWQ 131 (231)
Q Consensus 120 Gvl~HE~~Hv~Q 131 (231)
=+|+|||+|+|-
T Consensus 105 v~L~HEL~HA~~ 116 (174)
T PF14891_consen 105 VVLYHELIHAYD 116 (174)
T ss_pred HHHHHHHHHHHH
Confidence 399999999995
No 40
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=69.29 E-value=17 Score=35.14 Aligned_cols=52 Identities=23% Similarity=0.242 Sum_probs=32.8
Q ss_pred CCCeEEEEEeccCCCce-EEe-eCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhc
Q 036780 75 NIPQVDLFIDDMKPGEI-AFT-SNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQ 131 (231)
Q Consensus 75 ~v~~Vtl~l~d~~~~GV-A~t-~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q 131 (231)
|-++-+++|-|. +-| |++ .|+-|.+--..++=. +| ..|+..||.|||.||--
T Consensus 84 p~q~YriTilnS--P~INAFALPGGYlYitRGLlAla-nd--~sEvAAVl~HEmgHVtA 137 (479)
T COG4784 84 PQQTYRITILNS--PNINAFALPGGYLYITRGLLALA-ND--SSEVAAVLAHEMGHVTA 137 (479)
T ss_pred CCceEEEEEecC--CCccccccCCceEEEehhHHHHc-CC--HHHHHHHHHhhhhheec
Confidence 344455545454 333 554 577777765555433 23 56899999999999973
No 41
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.57 E-value=5.3 Score=37.95 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=28.5
Q ss_pred eeCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhc
Q 036780 94 TSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQ 131 (231)
Q Consensus 94 t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q 131 (231)
|++-.+.+||.-+.+.|.+ ++.++|.||+.|+..
T Consensus 49 t~~~~~y~NPei~~~~p~~----~~~aLl~HEV~Hi~l 82 (396)
T COG3864 49 TSYFTMYFNPEIFLNCPIS----EMKALLKHEVYHIML 82 (396)
T ss_pred CCceEEEeCHHHHccCCHH----HHHHHHHHHHHHHHH
Confidence 4455999999999999744 789999999999973
No 42
>PF08434 CLCA_N: Calcium-activated chloride channel; InterPro: IPR013642 The CLCA family of calcium-activated chloride channels has been identified in many epithelial and endothelial cell types as well as in smooth muscle cells [] and has four or five putative transmembrane regions. Additionally to their role as chloride channels some CLCA proteins function as adhesion molecules and may also have roles as tumour suppressors []. The domain described here is found at the N terminus of CLCAs.
Probab=64.58 E-value=40 Score=30.90 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=20.2
Q ss_pred CCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhh
Q 036780 96 NNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHV 129 (231)
Q Consensus 96 g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv 129 (231)
|.-||+.|+|+-+...+... --.=||.||-+|-
T Consensus 128 G~yIhltp~fl~~~~~~~yG-~~grv~VhEWAhl 160 (262)
T PF08434_consen 128 GEYIHLTPDFLLGDNLSQYG-PRGRVFVHEWAHL 160 (262)
T ss_pred CeeEEechhhhcCCchhhcC-Ccceeeeehhhhh
Confidence 34999999999764311000 0113788888885
No 43
>PTZ00337 surface protease GP63; Provisional
Probab=64.52 E-value=18 Score=36.59 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=21.7
Q ss_pred eEEEcchhhhcCCchhhhhHHHHHHHHhhhhhh
Q 036780 98 GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVW 130 (231)
Q Consensus 98 ~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~ 130 (231)
.|.|+|++|.... +...++.|||+|+-
T Consensus 215 ~in~np~~i~~~~------~~~~v~~HEi~HAL 241 (567)
T PTZ00337 215 AVNFDPRQIAVTN------GDVRVAAHELGHAL 241 (567)
T ss_pred EEEECHHHccchh------HHHHHHHHHHHHHH
Confidence 8889999986542 34579999999997
No 44
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=64.43 E-value=18 Score=32.06 Aligned_cols=58 Identities=17% Similarity=0.285 Sum_probs=35.8
Q ss_pred EEEeccCCCc--eEEeeCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCCCCCCCCcchhhhH
Q 036780 81 LFIDDMKPGE--IAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNNAPNIGWLIEGI 147 (231)
Q Consensus 81 l~l~d~~~~G--VA~t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~~g~~aP~~liEGI 147 (231)
+.|.+| .. -.++..+.|.+|...+.. | ...|.=|+.|||+|.-.-+ .+. .++.++|-+
T Consensus 143 ~~ik~~--k~~WGScs~~~~i~~~~~l~~~-p----~~~i~YVvvHELaHLke~n-Hs~-~Fw~lv~~~ 202 (223)
T COG1451 143 IKLKNM--KRRWGSCSKAGEIRFNWRLVMA-P----EEVIDYVVVHELAHLKEKN-HSK-RFWRLVEKY 202 (223)
T ss_pred eeeeec--cceeeeecCCCcEEeehhhhcC-C----HHHHHHHHHHHHHHHhhhh-ccH-HHHHHHHHH
Confidence 334477 43 233334488888775433 2 2346679999999999755 554 566665543
No 45
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=64.39 E-value=37 Score=30.36 Aligned_cols=81 Identities=12% Similarity=0.148 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhccCCCCC---CCCCCeEEEEEeccCCCceEEeeCCeEEEcchhhhcCC-chhhhhHHHHHHHHhhh
Q 036780 52 QTMTAATDFIWRLFQQNTEAD---RKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIP-VDLIKQEFSGVMYHEMT 127 (231)
Q Consensus 52 ~vl~~A~~~v~~~l~~~~~~~---r~~v~~Vtl~l~d~~~~GVA~t~g~~I~~s~~~i~~~~-~d~~~~ei~Gvl~HE~~ 127 (231)
+..++.......+.-.+.+.+ +++.....+..+..-..|.++++|..|.+...+....- .+.++..- =-+.||+-
T Consensus 150 ~~~D~ii~~~~el~Gl~~~~~~~~~~~~~~~r~v~~v~~~~g~m~a~g~~i~~~~~~~~~~l~~~~~~~~~-WG~~HE~G 228 (307)
T PF13402_consen 150 RFWDRIIDAEYELAGLDKSSPGPENNPMPNNRFVFDVQISAGYMHASGYPIGFPPNWMNELLNPNPLRKGG-WGPWHELG 228 (307)
T ss_dssp HHHHHHHHHHHHHTT-BSS--GGGB--S--EEEEEETT----SEEEETTEEEEETT--HHHH-HHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCCccccCcccceEEEeccccccceeecCCcEEeeCcHHhcccCHhHcCCCC-eeehhhhh
Confidence 334444444444443333222 23444445544432123789999999999888655431 12121111 14899999
Q ss_pred hhhccC
Q 036780 128 HVWQWN 133 (231)
Q Consensus 128 Hv~Q~~ 133 (231)
|..|..
T Consensus 229 H~~Q~~ 234 (307)
T PF13402_consen 229 HNHQQG 234 (307)
T ss_dssp HHH-BG
T ss_pred hhcCcc
Confidence 999965
No 46
>PF07580 Peptidase_M26_C: M26 IgA1-specific Metallo-endopeptidase C-terminal region; InterPro: IPR011505 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry represents metallopeptidases belonging to MEROPS peptidase family M26 (IgA1-specific metallopeptidase, clan MA). They are extracellular enzymes, which cleave mammalian IgA. They are only found in Gram-positive bacteria and are often found associated with IPR001899 from INTERPRO; they may be attached to the cell wall. This entry also contains the metallopeptidases ZmpB and ZmpC from Streptococcus pneumoniae. These metallopeptidases are thought to contribute to the inflammatory response to Streptococcal infection [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0005576 extracellular region, 0005618 cell wall
Probab=63.75 E-value=3.4 Score=42.89 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=21.6
Q ss_pred EEeeCCeEEEc-chhhhcCCchhhhhHHHHHHHHhhhhhh
Q 036780 92 AFTSNNGIHYG-DDFIQNIPVDLIKQEFSGVMYHEMTHVW 130 (231)
Q Consensus 92 A~t~g~~I~~s-~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~ 130 (231)
||+.|..|++. .+.|..+. ..+++|||||+-
T Consensus 372 AyA~g~~V~y~~~~ml~d~G--------~s~yTHEmTH~~ 403 (737)
T PF07580_consen 372 AYANGYAVYYVAYRMLDDYG--------ISTYTHEMTHNN 403 (737)
T ss_pred ceeeeeeEEEehhhhccccc--------hhhheeeccccc
Confidence 66777777765 45554442 369999999994
No 47
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=61.03 E-value=5.9 Score=32.69 Aligned_cols=59 Identities=22% Similarity=0.370 Sum_probs=39.4
Q ss_pred CCCCCeEEEEEeccCCC-------------------ceEEee------C---CeEEEc----chhhhcCCchhhhhHHHH
Q 036780 73 RKNIPQVDLFIDDMKPG-------------------EIAFTS------N---NGIHYG----DDFIQNIPVDLIKQEFSG 120 (231)
Q Consensus 73 r~~v~~Vtl~l~d~~~~-------------------GVA~t~------g---~~I~~s----~~~i~~~~~d~~~~ei~G 120 (231)
|+-...|++.|.|++++ ||+.|. | ++|.+= .+|.+.. .+.+.+-|+-
T Consensus 33 r~l~~~vvi~i~dfp~d~v~~d~~le~pf~LlGlyeGv~l~eR~~~~~G~~P~rItlYRrailDywae~-eetlgd~vth 111 (136)
T COG3824 33 RDLMGNVVILIADFPPDEVLDDLGLETPFDLLGLYEGVALTERGSLYTGELPDRITLYRRALLDYWAEN-EETLGDQVTH 111 (136)
T ss_pred HHHhcCeEEEeccCChHHhhhhcccCChHHHhhHhhccchhhccccccCCCCceeeeeHHHHHHHHhhh-hhhHhhHhhh
Confidence 44556778877766543 677654 2 377775 3444442 3458888999
Q ss_pred HHHHhhhhhhcc
Q 036780 121 VMYHEMTHVWQW 132 (231)
Q Consensus 121 vl~HE~~Hv~Q~ 132 (231)
||.||+.|-+--
T Consensus 112 vliHEIgHhFGL 123 (136)
T COG3824 112 VLIHEIGHHFGL 123 (136)
T ss_pred hhhhhhhhhcCC
Confidence 999999997743
No 48
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=60.64 E-value=23 Score=26.07 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=21.0
Q ss_pred CCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCCC
Q 036780 96 NNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGN 135 (231)
Q Consensus 96 g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~~ 135 (231)
...|.+|+.. .. -+. .=++.||+.|++.....
T Consensus 28 ~~~I~in~~~-~~-----~~~--~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 28 NPIIFINSNL-SP-----ERQ--RFTLAHELGHILLHHGD 59 (122)
T ss_dssp TTEEEEESSS--H-----HHH--HHHHHHHHHHHHHHH-H
T ss_pred CCEEEECCCC-CH-----HHH--HHHHHHHHHHHHhhhcc
Confidence 5588888772 11 122 33899999999986553
No 49
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=56.51 E-value=12 Score=35.61 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=30.4
Q ss_pred eEEEEEecc----CCCceEEee--CCeEEEcchhhhcCCc---hhhhhHHHHHHHHhhhhhhccCCCC
Q 036780 78 QVDLFIDDM----KPGEIAFTS--NNGIHYGDDFIQNIPV---DLIKQEFSGVMYHEMTHVWQWNGNN 136 (231)
Q Consensus 78 ~Vtl~l~d~----~~~GVA~t~--g~~I~~s~~~i~~~~~---d~~~~ei~Gvl~HE~~Hv~Q~~~~g 136 (231)
.+++.-.|. +++-+|||. .+.|...|.|....|. ..-...-.+++.|||+|.-+=..+|
T Consensus 248 ~~t~~C~D~~~~C~~~vlAYT~p~~~~I~~Cp~ff~~lp~~~~~C~~qDqatt~LHE~TH~~~V~~pg 315 (359)
T PF02102_consen 248 STTYYCTDPYGYCSSGVLAYTLPSQNQIVNCPIFFSDLPALSNRCHAQDQATTTLHEMTHAPAVYSPG 315 (359)
T ss_dssp S-EEESS-SSS---TT--EEEEGGGTEEEE-HHHHHH--SS--STT---HHHHHHHHHHT-TTTSSS-
T ss_pred ceEEEEECCCCccCCCeEEEEEcCCCeEEECchhhccCCCccccccCCCccchhhhhhhccccccCCC
Confidence 455554443 122368985 5699999999976542 1112224589999999997643333
No 50
>PF02128 Peptidase_M36: Fungalysin metallopeptidase (M36); InterPro: IPR001842 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M36 (fungalysin family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Fungalysin is produced by fungi, Aspergillus and other species, to aid degradation of host lung cell walls on infection. The enzyme is a 42kDa single chain protein, with a pH optimum of 7.5-8.0 and optimal temperature of 60 celcius [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0005615 extracellular space
Probab=55.11 E-value=4.2 Score=39.09 Aligned_cols=37 Identities=30% Similarity=0.375 Sum_probs=28.8
Q ss_pred HHHHHHhhhhhhccCCCCCC---------CCcchhhhHHHHHHHhh
Q 036780 119 SGVMYHEMTHVWQWNGNNAP---------NIGWLIEGIADFVRLKA 155 (231)
Q Consensus 119 ~Gvl~HE~~Hv~Q~~~~g~~---------aP~~liEGIADyVRl~a 155 (231)
.||+.||.+|-....-.|.+ ..+++=||..||+.+.-
T Consensus 186 ~~Ii~HEy~HGiSnRLvgG~~~s~cL~~~e~~~mGEGWsD~~Al~~ 231 (378)
T PF02128_consen 186 NGIIAHEYGHGISNRLVGGPANSSCLQNLESGGMGEGWSDFFALMM 231 (378)
T ss_pred cCeeEEeecccccccccCCCcccccccccccCCCcccHHHHHHHHh
Confidence 58999999999987554422 25788999999998743
No 51
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=54.87 E-value=11 Score=35.77 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=26.9
Q ss_pred hhHHHHHHHHhhhhhhccCCCCCCCCcchhhhHHHHHHH
Q 036780 115 KQEFSGVMYHEMTHVWQWNGNNAPNIGWLIEGIADFVRL 153 (231)
Q Consensus 115 ~~ei~Gvl~HE~~Hv~Q~~~~g~~aP~~liEGIADyVRl 153 (231)
..|+.++|.|||+|-.-+=...+ -+=|..|.+|--
T Consensus 162 ~~~LA~LIfHELaHq~~Yv~~dt----~FNEsfAtfVe~ 196 (337)
T PF10023_consen 162 DGELARLIFHELAHQTLYVKGDT----AFNESFATFVER 196 (337)
T ss_pred chHHHHHHHHHHhhceeecCCCc----hhhHHHHHHHHH
Confidence 46799999999999988744333 478888888843
No 52
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=54.16 E-value=9.6 Score=30.72 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=23.7
Q ss_pred CeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhcc
Q 036780 97 NGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQW 132 (231)
Q Consensus 97 ~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~ 132 (231)
++|+++...+.....+.......+++.||+.|+.--
T Consensus 73 g~i~~~~~~~~~~~~~~~~~~~~~~~~HEiGHaLGL 108 (165)
T cd04268 73 GEILLARVYLYSSFVEYSGARLRNTAEHELGHALGL 108 (165)
T ss_pred ccEEeeEEEEchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 488887766543210112345789999999999843
No 53
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=54.02 E-value=7.1 Score=39.45 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=25.7
Q ss_pred HHHHHHhhhhhhccCCCCC--CCCcchhhhHHHHH
Q 036780 119 SGVMYHEMTHVWQWNGNNA--PNIGWLIEGIADFV 151 (231)
Q Consensus 119 ~Gvl~HE~~Hv~Q~~~~g~--~aP~~liEGIADyV 151 (231)
..||.||++|.|--+--+. ..--||-||.+-|+
T Consensus 289 ~~vIaHEIAHSWtGNlVTN~sWehfWLNEGfTvyl 323 (613)
T KOG1047|consen 289 VDVIAHEIAHSWTGNLVTNASWEHFWLNEGFTVYL 323 (613)
T ss_pred hhHHHHHhhhhhcccccccCccchhhhcccchhhh
Confidence 4699999999997544332 24579999999998
No 54
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=53.96 E-value=5.9 Score=39.26 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=25.3
Q ss_pred HHHHHhhhhhhccCCCC---CCCCcchhhhHHHHHH
Q 036780 120 GVMYHEMTHVWQWNGNN---APNIGWLIEGIADFVR 152 (231)
Q Consensus 120 Gvl~HE~~Hv~Q~~~~g---~~aP~~liEGIADyVR 152 (231)
.|+.|||+|-+.-+.-| .+-||+|=|.++|-..
T Consensus 339 DVvAHElTHGvtq~tA~L~Y~~qsGALNEsfSDvfG 374 (507)
T COG3227 339 DVVAHELTHGVTQQTAGLIYRGQSGALNESFSDVFG 374 (507)
T ss_pred ceehhhhcchhhhhccCceecCCCCchhhHHHHHHH
Confidence 59999999988533333 1379999999999665
No 55
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=51.74 E-value=21 Score=33.81 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=43.1
Q ss_pred eEEEEEec-cCCCceEEeeCCeEEEcchhhhcCCchhhhhHHHHHHHHhh-hhhhcc-CCCCCC-------CC--cchhh
Q 036780 78 QVDLFIDD-MKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEM-THVWQW-NGNNAP-------NI--GWLIE 145 (231)
Q Consensus 78 ~Vtl~l~d-~~~~GVA~t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~-~Hv~Q~-~~~g~~-------aP--~~liE 145 (231)
.|++.++| + -.-|..+++.|.++.+.. ++ +.++.+++.||+ ||+... ||.-.+ .| -..-|
T Consensus 132 ~~~V~~sddl--~a~A~v~~~~l~I~~~~~--fs----~~~l~~L~~HEigvH~lt~~Ng~~QPl~~l~~Glp~~~~TQE 203 (349)
T PF08014_consen 132 EVKVELSDDL--LARAMVSGDRLKINKNAM--FS----ERDLEALLHHEIGVHLLTTLNGRAQPLKILSLGLPGYTPTQE 203 (349)
T ss_pred eEEEEEcCCc--chhhcccCCeeEEcCCCC--cC----HHHHHHHHHHhhhhhhccccccccCCcHHhCCCCCCCCCCch
Confidence 57777764 3 333556778898887642 21 346899999999 999864 444321 11 22446
Q ss_pred hHHHHHHHhhC
Q 036780 146 GIADFVRLKAN 156 (231)
Q Consensus 146 GIADyVRl~ag 156 (231)
|+|-+--+..|
T Consensus 204 GLAvl~E~l~g 214 (349)
T PF08014_consen 204 GLAVLSEYLSG 214 (349)
T ss_pred HHHHHHHHHhC
Confidence 66655555444
No 56
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=51.56 E-value=13 Score=33.05 Aligned_cols=88 Identities=24% Similarity=0.371 Sum_probs=57.7
Q ss_pred HHHHhhhhhhccCCCCCCCCcchhhhHHHHHHHhhCcCCCCCCCCCCCCCcccCcchhHhHHHHHHhccCCcHHHHHHHH
Q 036780 121 VMYHEMTHVWQWNGNNAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNGFVAELNKK 200 (231)
Q Consensus 121 vl~HE~~Hv~Q~~~~g~~aP~~liEGIADyVRl~ag~~~~~w~~p~~g~~wd~gY~~~TA~FL~wle~~~~gfV~~LN~~ 200 (231)
-+|.||+|.-..+| ||.-++--|=-||+.| | +.+++-.- -++-|-+|++.. =+|+|+.
T Consensus 54 sVY~El~~fm~r~g----c~~e~~~ki~twivkK----------t--Pnryevki--Pa~ifyeyV~di----R~RinkG 111 (221)
T COG1458 54 SVYRELMGFMERNG----CPEEVIAKIETWIVKK----------T--PNRYEVKI--PAAIFYEYVEDI----RERINKG 111 (221)
T ss_pred HHHHHHHHHHHhCC----CcHHHHHhhheeeEec----------C--CCceeecC--cHHHHHHHHHHH----HHHHHhh
Confidence 34666777666555 7777766666666554 2 23444422 567788999743 3578888
Q ss_pred Hhcc----CCHH----------HHHHHhCCCHHHHHHHHHHHhC
Q 036780 201 MRDG----YNDN----------FFMELLGKSIDQLWNDYKAKYG 230 (231)
Q Consensus 201 mr~~----ys~~----------~~~~~~G~~v~~LW~eY~~~~~ 230 (231)
||-. |... .-.+..|+.+..|-+.|.++.+
T Consensus 112 lRvAE~~i~eA~~~~~~~~~~~i~~e~igk~I~~lR~KYR~alR 155 (221)
T COG1458 112 LRVAEEAIREASIECYELEKEEIIREVVGKIIRKLREKYREALR 155 (221)
T ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8742 4322 2467789999999999998764
No 57
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=50.12 E-value=13 Score=29.48 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=19.8
Q ss_pred EEe--eCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhc
Q 036780 92 AFT--SNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQ 131 (231)
Q Consensus 92 A~t--~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q 131 (231)
|++ .++.++++. ...... .|++.||+.|+--
T Consensus 67 a~~g~~~g~~~~~~---~~~~~~------~~~~~HEigHaLG 99 (140)
T smart00235 67 SHAGRPGGDQHFSL---GNGCIN------TGVAAHELGHALG 99 (140)
T ss_pred eeeecCCCceEEEc---cCCcCC------cccHHHHHHHHhc
Confidence 554 367788764 111111 4799999999984
No 58
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=49.44 E-value=12 Score=30.37 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=23.9
Q ss_pred CCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhcc
Q 036780 96 NNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQW 132 (231)
Q Consensus 96 g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~ 132 (231)
.+.|+|+.+..-..+...-...+..|+.||+-|+.--
T Consensus 85 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~HEiGHaLGL 121 (157)
T cd04278 85 GGDIHFDDDEQWTLGSDSGGTDLFSVAAHEIGHALGL 121 (157)
T ss_pred ceeEEECCCcccccCCCCccchHHHHHHHHhcccccc
Confidence 5689998765433321001233778999999999853
No 59
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=47.74 E-value=56 Score=33.03 Aligned_cols=72 Identities=17% Similarity=0.319 Sum_probs=43.7
Q ss_pred CCCeEEEEEecc--CCCceEEeeCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCCCCC--------------C
Q 036780 75 NIPQVDLFIDDM--KPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNNA--------------P 138 (231)
Q Consensus 75 ~v~~Vtl~l~d~--~~~GVA~t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~~g~--------------~ 138 (231)
|..+-.|.+.-+ -+.|.-...++.|..+.-++... |. -....|.|.||.-|.|. .+-+ +
T Consensus 205 ~~~~Y~Fl~~~s~q~~GGlEH~~St~l~~~r~~~~~~--~k-y~~~l~llsHEyfH~WN--vKrIrpa~l~p~~~d~en~ 279 (558)
T COG3975 205 PFDKYVFLLHLSDQIYGGLEHRRSTALIYDRFGFTDQ--DK-YQDLLGLLSHEYFHAWN--VKRIRPAALEPFNLDKENY 279 (558)
T ss_pred CccceEEEEEecCCCCCCceeccccccccccccccch--hH-HHHHHHHHHHHHHHhcc--ceeccccccCCccccccCC
Confidence 444466666532 24566666666776666333222 21 13357999999999984 3321 1
Q ss_pred -CCcchhhhHHHHH
Q 036780 139 -NIGWLIEGIADFV 151 (231)
Q Consensus 139 -aP~~liEGIADyV 151 (231)
+--|+-||.-+|-
T Consensus 280 t~~lW~~EG~T~Yy 293 (558)
T COG3975 280 TPLLWFSEGFTSYY 293 (558)
T ss_pred CcceeeecCchHHH
Confidence 3369999998886
No 60
>PF01457 Peptidase_M8: Leishmanolysin This Prosite motif covers only the active site. This is family M8 in the peptidase classification. ; InterPro: IPR001577 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M8 (leishmanolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Leishmanolysin is an enzyme found in the eukaryotes including Leishmania and related parasitic protozoa []. The endopeptidase is the most abundant protein on the cell surface during the promastigote stage of the parasite, and is attached to the membrane by a glycosylphosphatidylinositol anchor []. In the amastigote form, the parasite lives in lysosomes of host macrophages, producing a form of the protease that has an acidic pH optimum []. This differs from most other metalloproteases and may be an adaptation to the environment in which the organism survives [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0007155 cell adhesion, 0016020 membrane; PDB: 1LML_A.
Probab=46.31 E-value=18 Score=35.79 Aligned_cols=99 Identities=17% Similarity=0.224 Sum_probs=44.7
Q ss_pred eEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCCC-----CC--------CCC--cc--hhhhHHHHHHHhhCc---
Q 036780 98 GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGN-----NA--------PNI--GW--LIEGIADFVRLKANY--- 157 (231)
Q Consensus 98 ~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~~-----g~--------~aP--~~--liEGIADyVRl~ag~--- 157 (231)
.|.|+|.+|.... ..+...++.|||+|+--.... +. +.| -. .+.-+..++|-..|-
T Consensus 194 ~in~~p~~i~~~~----~~~~~~~~~HEi~HaLGFs~~~~~~~~~~~~~~~~~~~~~~~~~l~tp~v~~~ar~hf~C~~l 269 (521)
T PF01457_consen 194 VININPSYIPSFY----FQEFFRTVIHEIAHALGFSSSFFRYYGMPRTVSNVRGKPTTVTVLVTPNVVEFARKHFGCPTL 269 (521)
T ss_dssp EEE--GGG---S------HHHHHHHHHHHHHHTT-SHHHHHHTT-EEEES-GGG-SS-EEEE--HHHHHHHHHHHT-TT-
T ss_pred EEEEchhHccchh----hhcccceeeeeeeeeeeecccccccccccccccceeecCceeEEEeCcHHHHHHHHHhCCCcc
Confidence 8999999988752 234568999999999743221 10 011 11 245577777775552
Q ss_pred -------------CCCCCCCCCCCCCcccCc---chhHhHHHHHHhccCCcHHHHHHHHHhc
Q 036780 158 -------------VPEGWAKPGEGTMWNQGH---SSVAARFLDYCNDLRNGFVAELNKKMRD 203 (231)
Q Consensus 158 -------------~~~~w~~p~~g~~wd~gY---~~~TA~FL~wle~~~~gfV~~LN~~mr~ 203 (231)
.-+||++.--.+..+.|+ +..|..-|+.|++- ||=+ .|.+|.+
T Consensus 270 ~G~eLEd~Gg~gt~~sHwe~r~~~~ElMtg~~~~~~~S~lTlA~l~Dt--G~Y~-vn~~~ae 328 (521)
T PF01457_consen 270 EGIELEDQGGSGTAGSHWERRIFYNELMTGSSSNGVYSRLTLALLEDT--GWYK-VNYSMAE 328 (521)
T ss_dssp --EEB--SS-TTTTTSSB-TTT-TTBTTSSS-SS-B--HHHHHHHHHT--TS-E-E-GGG--
T ss_pred ccceeecccCCCchhcCcccccccchhccccccccchhHHHHHHHhhc--cCcc-ccccccc
Confidence 247887643223333333 12555556666643 3322 3555544
No 61
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=46.06 E-value=34 Score=31.86 Aligned_cols=80 Identities=15% Similarity=0.250 Sum_probs=50.9
Q ss_pred HHHHHhhhhhhccCCCCCCCCcchhhhHHHHHHHhhCcCCCCCCCCCCCCCcccCcchhHhHHHHH--Hh----ccCCc-
Q 036780 120 GVMYHEMTHVWQWNGNNAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSVAARFLDY--CN----DLRNG- 192 (231)
Q Consensus 120 Gvl~HE~~Hv~Q~~~~g~~aP~~liEGIADyVRl~ag~~~~~w~~p~~g~~wd~gY~~~TA~FL~w--le----~~~~g- 192 (231)
-.+.|||+|---. . -|.=|+|+.+-+.-. +=|--+ +.+|++..| |- +.++.
T Consensus 198 ~T~~HElAHq~G~---a-------~E~EANFiayLac~~-----------s~d~~f-rYSgy~~~l~y~l~~l~~~d~e~ 255 (318)
T PF12725_consen 198 FTICHELAHQLGF---A-------SEDEANFIAYLACIN-----------SPDPYF-RYSGYLFALRYCLNALYRKDPEA 255 (318)
T ss_pred HHHHHHHHHHhCC---C-------CHHHHHHHHHHHHhc-----------CCChhe-eHHHHHHHHHHHHHHHHhcCHHH
Confidence 4899999996532 2 378899999987532 122235 777888766 32 33443
Q ss_pred ---HHHHHHHHHhccCCH--HHHHHHhCCCHHHHH
Q 036780 193 ---FVAELNKKMRDGYND--NFFMELLGKSIDQLW 222 (231)
Q Consensus 193 ---fV~~LN~~mr~~ys~--~~~~~~~G~~v~~LW 222 (231)
+..+||..++..+.+ .+|++.-| +++++=
T Consensus 256 ~~~l~~~l~~~v~~d~~~~~~fW~~y~~-~i~~~~ 289 (318)
T PF12725_consen 256 YKELYSQLSPGVKKDLKENRAFWQKYEG-PIEEVS 289 (318)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhcc-hHHHHH
Confidence 555666666554443 67888888 776653
No 62
>COG5504 Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=43.93 E-value=51 Score=30.47 Aligned_cols=75 Identities=17% Similarity=0.168 Sum_probs=43.2
Q ss_pred CCCCCeEEEEEeccCCC---------ceEEeeCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCCCCCCCC---
Q 036780 73 RKNIPQVDLFIDDMKPG---------EIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNNAPNI--- 140 (231)
Q Consensus 73 r~~v~~Vtl~l~d~~~~---------GVA~t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~~g~~aP--- 140 (231)
+++|.-|+|-+..-++. |+++-.-=.+.++|++ +. .+|...++||.=||--|..-+- .-
T Consensus 94 ~pnv~~v~f~V~~~dp~irlqkg~kggg~~~~ki~l~l~p~~--~~------~~v~aliaHE~HH~~R~~~i~~-~eg~v 164 (280)
T COG5504 94 GPNVPIVDFPVTPGDPQIRLQKGRKGGGGIPGKIMLWLVPSS--TI------TSVPALIAHEYHHNCRLRYIDY-GEGSV 164 (280)
T ss_pred CCCCceeeecccCCCchHHHhhcccCCCCcCceEEEEEecCC--Cc------cchHHHHHHHHHhhheeccccc-CCCce
Confidence 44777788776544322 1222111145566663 22 2367899999999987655432 11
Q ss_pred ----cchhhhHHHH-HHHhhC
Q 036780 141 ----GWLIEGIADF-VRLKAN 156 (231)
Q Consensus 141 ----~~liEGIADy-VRl~ag 156 (231)
.=++||+|++ |+-..|
T Consensus 165 tLle~lV~EGLAE~av~E~~G 185 (280)
T COG5504 165 TLLEALVMEGLAEHAVFELFG 185 (280)
T ss_pred eHHHHHHHHHHHHHHHHHHhC
Confidence 1267999997 555544
No 63
>KOG3314 consensus Ku70-binding protein [Replication, recombination and repair]
Probab=43.42 E-value=23 Score=30.77 Aligned_cols=48 Identities=17% Similarity=0.280 Sum_probs=32.2
Q ss_pred CeEEEEEeccCCCceEEeeCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhc
Q 036780 77 PQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQ 131 (231)
Q Consensus 77 ~~Vtl~l~d~~~~GVA~t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q 131 (231)
+.|.....+- +-+--|+.|..|.+-..++.. +.++..|++|||-|.+-
T Consensus 57 ~~isc~~C~~-~~~GGy~~~~gIvlCqN~l~~------q~h~n~vv~HElIH~fD 104 (194)
T KOG3314|consen 57 NFISCVVCTG-PVAGGYTPGRGIVLCQNRLTI------QDHVNQVVIHELIHAFD 104 (194)
T ss_pred CceEEeeCCC-CccCCccCCCceEEeccccch------HHHHHHHHHHHHHHHHH
Confidence 4455554432 123357778789998777543 45677899999999984
No 64
>PF14521 Aspzincin_M35: Lysine-specific metallo-endopeptidase ; PDB: 2X3C_A 2X3A_A 2X3B_A 1GE7_B 1GE6_A 1GE5_A 1G12_A.
Probab=42.57 E-value=14 Score=30.46 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=21.5
Q ss_pred eEEee-C---CeEEEcchhhhcCC-chhhhhHHHHHHHHhhhh
Q 036780 91 IAFTS-N---NGIHYGDDFIQNIP-VDLIKQEFSGVMYHEMTH 128 (231)
Q Consensus 91 VA~t~-g---~~I~~s~~~i~~~~-~d~~~~ei~Gvl~HE~~H 128 (231)
.||+. + ..|.|-+.+...-. +. -. -.|.|.||++|
T Consensus 67 ~a~~~~~~~~~~IyLc~~F~~~p~~g~-~S--k~~TLiHE~SH 106 (148)
T PF14521_consen 67 YAYVYPDSPTYTIYLCPAFFSAPTTGK-DS--KEGTLIHEWSH 106 (148)
T ss_dssp SEEE-TTST-TEEEE-HHHHHS-SSST-T---HHHHHHHHHHH
T ss_pred EEEEECCCCceEEEEChhhcCCCCCCC-Cc--hHHHHHHhhhh
Confidence 55653 3 27999999987321 11 12 25899999999
No 65
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=41.97 E-value=93 Score=26.75 Aligned_cols=78 Identities=19% Similarity=0.184 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEEEe-cc----------CCCceEEeeCCeEEEcchhhhcCCchhhhhHH
Q 036780 50 AKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFID-DM----------KPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEF 118 (231)
Q Consensus 50 a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~l~-d~----------~~~GVA~t~g~~I~~s~~~i~~~~~d~~~~ei 118 (231)
+.++|.+-..+..+.+. ..+-+.+.|+.. ++ ...|+||..|-=-..+...+++.+. ....
T Consensus 75 ~~~tL~~F~~~~~~~~~------~~~~D~~~LlT~~~~~~~~~g~~~~~~~G~A~~g~~C~~~~~~~~~d~~~---~~~~ 145 (220)
T cd04272 75 AAETLENFNEYVKKKRD------YFNPDVVFLVTGLDMSTYSGGSLQTGTGGYAYVGGACTENRVAMGEDTPG---SYYG 145 (220)
T ss_pred HHHHHHHHHHHHhccCC------CCcccEEEEEeccceeeccCcccccCccceEeecCccCCCceeEeecCCC---Cccc
Confidence 45677766666544332 224456666653 22 0137787654200111122222211 1123
Q ss_pred HHHHHHhhhhhh--ccCCCC
Q 036780 119 SGVMYHEMTHVW--QWNGNN 136 (231)
Q Consensus 119 ~Gvl~HE~~Hv~--Q~~~~g 136 (231)
.-+++|||.|.. ++|+.+
T Consensus 146 ~~~~AHElGH~lG~~HD~~~ 165 (220)
T cd04272 146 VYTMTHELAHLLGAPHDGSP 165 (220)
T ss_pred HHHHHHHHHHHhCCCCCCCC
Confidence 469999999998 666544
No 66
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=41.09 E-value=20 Score=33.15 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=25.9
Q ss_pred EEeeC-CeEEEcchhhhcCC------chhhhhHHHHHHHHhhhhhhcc
Q 036780 92 AFTSN-NGIHYGDDFIQNIP------VDLIKQEFSGVMYHEMTHVWQW 132 (231)
Q Consensus 92 A~t~g-~~I~~s~~~i~~~~------~d~~~~ei~Gvl~HE~~Hv~Q~ 132 (231)
-|.++ +.|.++.+++.... +| + .+.-||.||.-|-+|.
T Consensus 140 FYCp~D~tIYlD~~f~~~L~~~~ga~G~-~--a~ayVlAHEyGHHVQ~ 184 (292)
T PF04228_consen 140 FYCPADQTIYLDLSFFDELQQRFGASGD-F--AQAYVLAHEYGHHVQN 184 (292)
T ss_pred EeCCCCCEEEechHHHHHHHHHhCCccH-H--HHHHHHHHHHHHHHHH
Confidence 34544 39999988764332 23 3 3345999999999994
No 67
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=40.96 E-value=1.5e+02 Score=28.69 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=25.8
Q ss_pred eCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhc
Q 036780 95 SNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQ 131 (231)
Q Consensus 95 ~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q 131 (231)
.|+.|.+=...+....+| +++.-||.||.+|..-
T Consensus 255 PgGKvfVFtgiLn~ck~d---dglAtvLgHE~aHaVa 288 (424)
T KOG2661|consen 255 PGGKVFVFTGILNSCKDD---DGLATVLGHEIAHAVA 288 (424)
T ss_pred cCCeEEEEechhhcccCh---HHHHHHHHHHHHHHHH
Confidence 577777767777776544 6788899999999764
No 68
>COG1644 RPB10 DNA-directed RNA polymerase, subunit N (RpoN/RPB10) [Transcription]
Probab=39.57 E-value=23 Score=25.85 Aligned_cols=16 Identities=38% Similarity=0.839 Sum_probs=14.2
Q ss_pred hCCCHHHHHHHHHHHh
Q 036780 214 LGKSIDQLWNDYKAKY 229 (231)
Q Consensus 214 ~G~~v~~LW~eY~~~~ 229 (231)
+|+.+.++|++|++..
T Consensus 10 CGkvi~~~w~~y~~rv 25 (63)
T COG1644 10 CGKVIGHKWEEYKRRV 25 (63)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6999999999999754
No 69
>PF14247 DUF4344: Domain of unknown function (DUF4344)
Probab=39.42 E-value=96 Score=27.62 Aligned_cols=73 Identities=16% Similarity=0.265 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCeEEEEEeccCCCceEEee-CCeEEEcchhhhcC---------Cc----hhhhhH
Q 036780 52 QTMTAATDFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTS-NNGIHYGDDFIQNI---------PV----DLIKQE 117 (231)
Q Consensus 52 ~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~l~d~~~~GVA~t~-g~~I~~s~~~i~~~---------~~----d~~~~e 117 (231)
++|.+...++-..|. -| +.|+++...--.+|-=|-+ ..+|++.-.++... +. ..+..-
T Consensus 20 ~vlE~~~~~in~~f~----LP----~~l~i~~~~CGe~nA~ydPe~~~I~iCYEf~~~~~~~f~~~~~~~~~~~~~~~~~ 91 (220)
T PF14247_consen 20 RVLEDVADLINDYFP----LP----RDLTIRFAECGEDNAFYDPENRSITICYEFVDEILDRFAKANDPDEEYGQAAIGN 91 (220)
T ss_pred chHHHHHHHHhhcCC----CC----CCeEEEEeecCCCCCccCCCCCEEEECHHHHHHHHHHHHhCCcCcchHHHHHHHH
Confidence 566666666555542 12 3488888543002323333 45999986665421 11 124456
Q ss_pred HHHHHHHhhhhhhcc
Q 036780 118 FSGVMYHEMTHVWQW 132 (231)
Q Consensus 118 i~Gvl~HE~~Hv~Q~ 132 (231)
+.-+|+||+.|...-
T Consensus 92 ~~~~l~HE~GHAlI~ 106 (220)
T PF14247_consen 92 VLFTLYHELGHALID 106 (220)
T ss_pred HHHHHHHHHHHHHHH
Confidence 678999999999964
No 70
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]
Probab=37.12 E-value=43 Score=31.84 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=38.5
Q ss_pred CCCeEEEEEeccCCCceEEe--eCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCC
Q 036780 75 NIPQVDLFIDDMKPGEIAFT--SNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNG 134 (231)
Q Consensus 75 ~v~~Vtl~l~d~~~~GVA~t--~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~ 134 (231)
..++++++..+- -+|-..+ ..-.|.+..++.++.+ ..|+.=++.||++|.--.|.
T Consensus 150 ~~k~i~ir~s~~-i~~P~v~gl~kp~IvlP~d~~~r~~----~ee~~yIilHEl~Hlk~gD~ 206 (337)
T COG4219 150 YKKHILIRKSKA-IDGPMVFGLVKPCIVLPADFVERLT----DEELKYIILHELSHLKRGDA 206 (337)
T ss_pred hccCeeEeeccc-CCCceeeccCcceEEccHHHHhhcC----HHhhhhhHhHHHhhhhcccH
Confidence 345677776642 2554433 3459999999999985 45777899999999865443
No 71
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=36.80 E-value=20 Score=29.92 Aligned_cols=36 Identities=31% Similarity=0.356 Sum_probs=17.8
Q ss_pred EEeeCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhh
Q 036780 92 AFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVW 130 (231)
Q Consensus 92 A~t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~ 130 (231)
|+=.|+.+.|-...-..+. . +...+ .|+.|||+|-+
T Consensus 112 AfW~g~~m~yGdG~~~~f~-~-~~~~l-DVvaHEltHGV 147 (150)
T PF01447_consen 112 AFWNGSQMVYGDGDGQIFK-P-FASSL-DVVAHELTHGV 147 (150)
T ss_dssp EEE-SSSEEEE---SSSBS---GGG-H-HHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCcccc-c-Ccccc-ceeeecccccc
Confidence 4445667776543211110 1 22223 69999999976
No 72
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=36.61 E-value=1.6e+02 Score=24.41 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=31.3
Q ss_pred CeEEEEEeccC---CCceEEeeC--------CeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhcc
Q 036780 77 PQVDLFIDDMK---PGEIAFTSN--------NGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQW 132 (231)
Q Consensus 77 ~~Vtl~l~d~~---~~GVA~t~g--------~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~ 132 (231)
..|.+...+.. ..|.|+-++ +.|+++..+...... .......++.||+-|+.--
T Consensus 63 adI~i~~~~~~~~~~~g~a~~p~~~~~~~~~g~i~~~~~~~~~~~~--~g~~~~~t~~HEiGHaLGL 127 (186)
T cd04277 63 ADIRFGNSSDPDGNTAGYAYYPGSGSGTAYGGDIWFNSSYDTNSDS--PGSYGYQTIIHEIGHALGL 127 (186)
T ss_pred ceEEEEeccCCCCCccEEEECCCCCccccccceeEEecCcccccCC--CChhhHHHHHHHHHHHhcC
Confidence 44555555531 134555432 378888776544210 1223468999999999854
No 73
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=36.32 E-value=19 Score=28.51 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=20.8
Q ss_pred eEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhcc
Q 036780 98 GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQW 132 (231)
Q Consensus 98 ~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~ 132 (231)
.|+++....-.... -...+..|+.||+-|+.--
T Consensus 87 ~i~~~~~~~~~~~~--~~~~~~~v~~HEiGHaLGL 119 (154)
T PF00413_consen 87 DIHFNDDESWTIDD--SGNDLQSVAIHEIGHALGL 119 (154)
T ss_dssp EEEEETTSHEESSS--SSEEHHHHHHHHHHHHTTB
T ss_pred cccccccccchhhh--hhhhhhhhhhhccccccCc
Confidence 67777655322211 1234778999999999843
No 74
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=35.88 E-value=22 Score=28.80 Aligned_cols=20 Identities=15% Similarity=0.317 Sum_probs=15.5
Q ss_pred hHHHHHHHHhhhhhhccCCC
Q 036780 116 QEFSGVMYHEMTHVWQWNGN 135 (231)
Q Consensus 116 ~ei~Gvl~HE~~Hv~Q~~~~ 135 (231)
.++.+++.||+-|+.--...
T Consensus 102 ~~~~~~~~HEiGHaLGL~H~ 121 (156)
T cd04279 102 ENLQAIALHELGHALGLWHH 121 (156)
T ss_pred hHHHHHHHHHhhhhhcCCCC
Confidence 35789999999999854333
No 75
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=35.08 E-value=21 Score=31.71 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=17.5
Q ss_pred eEEEcchhhhcCCchhhhhHHHHHHHHhhhhhh
Q 036780 98 GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVW 130 (231)
Q Consensus 98 ~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~ 130 (231)
.|.+ .-+...+.+ -+..|++|||-||.
T Consensus 119 ~I~I--~~~~~~~~~----~~~hvi~HEiGH~I 145 (211)
T PF12388_consen 119 FIQI--YGLSNYSVN----VIEHVITHEIGHCI 145 (211)
T ss_pred eEEE--EecCCCchh----HHHHHHHHHhhhhc
Confidence 7777 123333322 24569999999998
No 76
>PF13076 DUF3940: Protein of unknown function (DUF3940)
Probab=33.85 E-value=49 Score=21.64 Aligned_cols=30 Identities=20% Similarity=0.452 Sum_probs=23.1
Q ss_pred HHHHHhcc-CCHHHHHHHhCCCHHHHHHHHHH
Q 036780 197 LNKKMRDG-YNDNFFMELLGKSIDQLWNDYKA 227 (231)
Q Consensus 197 LN~~mr~~-ys~~~~~~~~G~~v~~LW~eY~~ 227 (231)
+++-++.| |...- .++...++.+|+++|+.
T Consensus 7 I~~Li~~Giyk~~d-rqL~Eltl~ELe~ey~~ 37 (38)
T PF13076_consen 7 IEKLIQSGIYKKED-RQLYELTLSELEKEYER 37 (38)
T ss_pred HHHHHHcCCcCccc-hHHHHcCHHHHHHHHHc
Confidence 34445667 77644 88999999999999985
No 77
>KOG3624 consensus M13 family peptidase [Amino acid transport and metabolism]
Probab=31.88 E-value=66 Score=32.60 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=24.9
Q ss_pred eeCCeEEEcchhhhc------CCchhhhhHHHHH-HHHhhhhhh
Q 036780 94 TSNNGIHYGDDFIQN------IPVDLIKQEFSGV-MYHEMTHVW 130 (231)
Q Consensus 94 t~g~~I~~s~~~i~~------~~~d~~~~ei~Gv-l~HE~~Hv~ 130 (231)
...|.|.+....+.. +| +.+.....|+ |.|||+|.+
T Consensus 488 ~~~N~i~~pa~ilq~P~f~~~~P-~~~nyg~iG~vigHEl~H~F 530 (687)
T KOG3624|consen 488 PEKNEIVFPAGLLQPPFFDLSYP-DYLNYGGIGFVIGHELTHGF 530 (687)
T ss_pred CCCceEEEehhcccCCCCCcccc-hhhhhHHHHHHHHHHHhhcc
Confidence 346888888776653 23 3366655665 599999998
No 78
>KOG1675 consensus Predicted cyclin [General function prediction only]
Probab=31.56 E-value=34 Score=32.38 Aligned_cols=65 Identities=26% Similarity=0.459 Sum_probs=47.7
Q ss_pred CCCCCCCCCCCCcc--cCcchhHhHHHHHHhccCCcHHHHHHHHHhccCCHHHHHHHhCCCHHHHHHHHHHHh
Q 036780 159 PEGWAKPGEGTMWN--QGHSSVAARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKY 229 (231)
Q Consensus 159 ~~~w~~p~~g~~wd--~gY~~~TA~FL~wle~~~~gfV~~LN~~mr~~ys~~~~~~~~G~~v~~LW~eY~~~~ 229 (231)
|..|.++..|..|. .+|-+..+.=.+||+-.+...|..+|+.=| -|-++++..+..=|.+|++.|
T Consensus 231 p~~w~r~~~g~il~sskv~~dqs~wnvdycqIlKd~tveDmNe~ER------qfLelLqfNinvp~svYAKyY 297 (343)
T KOG1675|consen 231 PRNWSRAVLGEILLSSKVYDDQSVWNVDYCEILKDQSVDDMNALER------QFLELLQFNINVPSSEYAKYY 297 (343)
T ss_pred cchhhhhhhhhheehhhhhhhhhcccHHHHHHHhhccHhhHHHHHH------HHHHHHhhccCccHHHHHHHH
Confidence 67788776554442 223123333489999888899999998754 577889999999999999876
No 79
>PTZ00257 Glycoprotein GP63 (leishmanolysin); Provisional
Probab=29.25 E-value=38 Score=34.75 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=22.9
Q ss_pred eEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhcc
Q 036780 98 GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQW 132 (231)
Q Consensus 98 ~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~ 132 (231)
.|-|+|.+|.+. ...+...++.|||+|+--.
T Consensus 240 ~iNinp~~i~s~----~~~~~~rv~~HEi~HALGF 270 (622)
T PTZ00257 240 VMNIPAANIVSR----YDQGTTRTVTHEVAHALGF 270 (622)
T ss_pred EEeeCHHHCCCc----cchHHHHHHHHHHHHHhcC
Confidence 788999888642 2334678999999998743
No 80
>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional
Probab=28.64 E-value=31 Score=29.54 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=30.4
Q ss_pred cCcchhHhHHHHHHhccC---CcHHHHHHHHHhccCCHHHHHHHhCCCHHHHH
Q 036780 173 QGHSSVAARFLDYCNDLR---NGFVAELNKKMRDGYNDNFFMELLGKSIDQLW 222 (231)
Q Consensus 173 ~gY~~~TA~FL~wle~~~---~gfV~~LN~~mr~~ys~~~~~~~~G~~v~~LW 222 (231)
-|| ++.-+.++.|.-++ +-+++-|+- |+ ==..++|+.+|||.+|.|.
T Consensus 34 ~G~-~VG~rllE~l~~r~~~~~R~~~~L~i-Lk-FI~~~~W~~lFgk~aD~Lk 83 (168)
T PTZ00391 34 MGL-RVGYKLNELLPYREKNQKRETKILSI-LT-FISKHVWKYLFGHSSDLLK 83 (168)
T ss_pred HhH-HHhHHHHHHHHHhccCCCccchHHHH-HH-HHHHHHHHHHhCchhhhhc
Confidence 468 88888888887332 333333331 11 0124789999999999993
No 81
>PRK04016 DNA-directed RNA polymerase subunit N; Provisional
Probab=28.21 E-value=46 Score=24.19 Aligned_cols=16 Identities=31% Similarity=0.798 Sum_probs=14.1
Q ss_pred hCCCHHHHHHHHHHHh
Q 036780 214 LGKSIDQLWNDYKAKY 229 (231)
Q Consensus 214 ~G~~v~~LW~eY~~~~ 229 (231)
+||.+.++|++|+...
T Consensus 10 CGkvi~~~we~y~~~~ 25 (62)
T PRK04016 10 CGKVIAEKWEEFKERV 25 (62)
T ss_pred CCCChHHHHHHHHHHH
Confidence 6999999999999764
No 82
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=28.19 E-value=81 Score=28.32 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=33.7
Q ss_pred CCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCCCCCCCCcchhhhHHHHHHH
Q 036780 96 NNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNNAPNIGWLIEGIADFVRL 153 (231)
Q Consensus 96 g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~~g~~aP~~liEGIADyVRl 153 (231)
...|.+|++-..+.+-. . .||-.||.-|..|+. +|- .|-.+=..|+-.+.+
T Consensus 72 ~k~vrLS~~vy~~~Sia----A-vaVAAHEvGHAiQ~a-~~Y-~pl~lRs~lvP~~~~ 122 (222)
T PF04298_consen 72 NKVVRLSEDVYNGRSIA----A-VAVAAHEVGHAIQHA-EGY-APLRLRSALVPVANI 122 (222)
T ss_pred CCEEEeCCccCCCCCHH----H-HHHHHHHHhHHHhcc-ccC-cHHHHHHHHHHHHHH
Confidence 34899998877666521 2 489999999999964 454 565554444444433
No 83
>PF01401 Peptidase_M2: Angiotensin-converting enzyme This Prosite motif covers only the active site.; InterPro: IPR001548 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M2 (clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The catalytic residues and zinc ligands have been identified, the zinc ion being ligated to two His residues within the motif HEXXH, showing that the enzyme belongs to the E sub-group of metalloproteases []. Pepetidyl-dipeptidase A (angiotensin-converting enzyme) is a mammalian enzyme responsible for cleavage of dipeptides from the C-termini of proteins, notably converting angiotensin I to angiotensin II []. The enzyme exists in two differentially transcribed forms, the most common of which is from lung endothelium; this contains two homologous domains that have arisen by gene duplication []. The testis-specific form contains only the C-terminal domain, arising from a duplicated promoter region present in intron 12 of the gene []. Both enzymatic forms are membrane proteins that are anchored by means of a C-terminal transmembrane domain. Both domains of the endothelial enzyme are active, but have differing kinetic constants []. ]. A number of insect enzymes have been shown to be similar to peptidyl-dipeptidase A, these containing a single catalytic domain.; GO: 0008237 metallopeptidase activity, 0008241 peptidyl-dipeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YDM_A 3BKL_A 2C6N_B 1UZE_A 3BKK_A 2C6F_B 2IUX_A 2IUL_A 2XYD_B 3NXQ_B ....
Probab=27.81 E-value=46 Score=33.78 Aligned_cols=36 Identities=25% Similarity=0.249 Sum_probs=27.0
Q ss_pred HHHHHhhhhhh---ccCCCC----CCCCcchhhhHHHHHHHhh
Q 036780 120 GVMYHEMTHVW---QWNGNN----APNIGWLIEGIADFVRLKA 155 (231)
Q Consensus 120 Gvl~HE~~Hv~---Q~~~~g----~~aP~~liEGIADyVRl~a 155 (231)
-.+-|||.|+. |+..+. .++-+|+-|+|.|.|.|-+
T Consensus 351 ~t~hhemghi~Y~~~y~~qp~~fr~gan~gfhEAigd~ials~ 393 (595)
T PF01401_consen 351 LTAHHEMGHIQYYMQYKDQPVLFREGANPGFHEAIGDTIALSV 393 (595)
T ss_dssp HHHHHHHHHHHHHHHTTTS-GGGSS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCChhhhcCCCchHHHHHHHHHHHHc
Confidence 47889999997 444332 1378899999999999844
No 84
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=25.85 E-value=41 Score=28.67 Aligned_cols=15 Identities=47% Similarity=0.696 Sum_probs=12.6
Q ss_pred HHHHHHHHhhhhhhc
Q 036780 117 EFSGVMYHEMTHVWQ 131 (231)
Q Consensus 117 ei~Gvl~HE~~Hv~Q 131 (231)
+..|++.||+.|+.-
T Consensus 91 ~~~~~i~HElgHaLG 105 (198)
T cd04327 91 EFSRVVLHEFGHALG 105 (198)
T ss_pred hHHHHHHHHHHHHhc
Confidence 356999999999984
No 85
>PF04530 Viral_Beta_CD: Viral Beta C/D like family; InterPro: IPR007617 This is a family of ssRNA positive-strand viral proteins. Conserved region is found in the Beta C and Beta D transcripts.
Probab=25.83 E-value=1.6e+02 Score=24.19 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=14.0
Q ss_pred hhhhhhccCCCCCCCCcc
Q 036780 125 EMTHVWQWNGNNAPNIGW 142 (231)
Q Consensus 125 E~~Hv~Q~~~~g~~aP~~ 142 (231)
+..|-||-.+-|. .|+|
T Consensus 106 aAIHHwQk~PfG~-~p~~ 122 (122)
T PF04530_consen 106 AAIHHWQKYPFGE-SPRW 122 (122)
T ss_pred HHHHHHHhCCCCC-CCCC
Confidence 4469999999998 8877
No 86
>PLN00032 DNA-directed RNA polymerase; Provisional
Probab=24.87 E-value=55 Score=24.44 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=14.2
Q ss_pred hCCCHHHHHHHHHHHh
Q 036780 214 LGKSIDQLWNDYKAKY 229 (231)
Q Consensus 214 ~G~~v~~LW~eY~~~~ 229 (231)
+||.+.++|++|++..
T Consensus 10 CGkvig~~we~y~~~~ 25 (71)
T PLN00032 10 CGKVIGNKWDTYLDLL 25 (71)
T ss_pred CCCCcHHHHHHHHHHH
Confidence 6999999999999865
No 87
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=24.81 E-value=59 Score=25.31 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=18.0
Q ss_pred hhhhHHHHHHHHhhhhhhccCC
Q 036780 113 LIKQEFSGVMYHEMTHVWQWNG 134 (231)
Q Consensus 113 ~~~~ei~Gvl~HE~~Hv~Q~~~ 134 (231)
.+..+|.-+|.||+.|..-+++
T Consensus 68 eL~~~I~~tlvhEiah~fG~~~ 89 (97)
T PF06262_consen 68 ELAELIRDTLVHEIAHHFGISD 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHHHHHHHcCCCH
Confidence 4999999999999999987654
No 88
>PF02130 UPF0054: Uncharacterized protein family UPF0054; InterPro: IPR002036 These, as yet, uncharacterised proteins are of 17 to 21 kDa. They contain a conserved region with three histidines at the C terminus. The protein family is represented by a single member sequence only in nearly every bacterium. The crystal structure of the protein from the hyperthermophilic bacteria Aquifex aeolicus has been determined. The overall fold consists of one central alpha-helix surrounded by a four-stranded beta-sheet and four other alpha-helices. Structure-based homology analysis reveals a good resemblance to the metal-dependent proteinases such as collagenases and gelatinases. However, experimental tests for collagenase and gelatinase-type function show no detectable activity under standard assay conditions [].; GO: 0046872 metal ion binding; PDB: 1TVI_A 1OZ9_A 1XM5_A 1XAX_A.
Probab=24.69 E-value=1e+02 Score=25.29 Aligned_cols=61 Identities=11% Similarity=0.148 Sum_probs=39.9
Q ss_pred CCCCeEEEEEeccCCCceEEee---CCeEEEcchhhhcCC---chhhhhHHHHHHHHhhhhhhccCCC
Q 036780 74 KNIPQVDLFIDDMKPGEIAFTS---NNGIHYGDDFIQNIP---VDLIKQEFSGVMYHEMTHVWQWNGN 135 (231)
Q Consensus 74 ~~v~~Vtl~l~d~~~~GVA~t~---g~~I~~s~~~i~~~~---~d~~~~ei~Gvl~HE~~Hv~Q~~~~ 135 (231)
+|++=++|-..+- ..+..... -+.|.+|++++...+ +..+..|+.=++.|.+-|.--||-.
T Consensus 59 ~pTDVLSFp~~~~-~~~~~~~~~~~lGdI~Is~~~~~~qA~e~~~~~~~el~~l~vHG~LHLlGyDH~ 125 (145)
T PF02130_consen 59 YPTDVLSFPYDEP-EEPISPLPFEYLGDIFISPDTAERQAEEYGHSFEEELARLLVHGLLHLLGYDHE 125 (145)
T ss_dssp SS-SEEEEE--SS-STTEE-E---EEEEEEEEHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHTT-SST
T ss_pred CCCeEEeECCCCC-cccccccccccCceEEECHHHHHHHHHHccCChHHHHhHHHHHHHHHHcCCCCC
Confidence 4677778766653 12332222 469999999997653 2348999999999999999988765
No 89
>PRK15435 bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase; Provisional
Probab=24.16 E-value=2e+02 Score=27.14 Aligned_cols=74 Identities=9% Similarity=0.080 Sum_probs=46.8
Q ss_pred HHhhCcCCCCCCCCCCCCCcccCcchhHhHHHHHHhccCCcHHHHHHHHHhcc--CCHHHHHHHhCCCHHHHHHHHH
Q 036780 152 RLKANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNGFVAELNKKMRDG--YNDNFFMELLGKSIDQLWNDYK 226 (231)
Q Consensus 152 Rl~ag~~~~~w~~p~~g~~wd~gY~~~TA~FL~wle~~~~gfV~~LN~~mr~~--ys~~~~~~~~G~~v~~LW~eY~ 226 (231)
...+||.|-.-++|.....|+... +...+.++|++...+--+.+|=+.+--. +-...|++.+|.+..+.-..++
T Consensus 61 A~~aGfRpC~rCrP~~~~~~~~~~-~~i~~a~~~I~~~~~lsl~eLA~~lG~S~~~L~R~Fkk~~G~TP~~yl~~~R 136 (353)
T PRK15435 61 ALAAGFRPCKRCQPDKANPQQHRL-DKITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKATTGMTPKAWQQAWR 136 (353)
T ss_pred HHHcCCCchhccCCcccchhhhHH-HHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 345688887777775433455556 7788889998762222355555444221 2236788888988888766554
No 90
>PF10005 DUF2248: Uncharacterized protein conserved in bacteria (DUF2248); InterPro: IPR011201 This is a family of uncharacterised bacterial proteins.
Probab=23.99 E-value=1.6e+02 Score=28.22 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=32.6
Q ss_pred CCCeEEEE-EeccCCCceEEee---CCeEEEcchhhhcCCchhh-------hhHHHHHHHHhhhhhhccCC
Q 036780 75 NIPQVDLF-IDDMKPGEIAFTS---NNGIHYGDDFIQNIPVDLI-------KQEFSGVMYHEMTHVWQWNG 134 (231)
Q Consensus 75 ~v~~Vtl~-l~d~~~~GVA~t~---g~~I~~s~~~i~~~~~d~~-------~~ei~Gvl~HE~~Hv~Q~~~ 134 (231)
|..-+.|- |.|. .++-.+.+ ++.|.++..--...--.+. -+-+.|=+.||+.|.+ |+-
T Consensus 126 ~~~GL~FdfL~d~-~~~~~V~TGHa~GvITinlaEADda~RE~~R~~m~EpYRTLLGHfRHE~GHYy-wd~ 194 (343)
T PF10005_consen 126 PERGLAFDFLADP-SGGEPVMTGHANGVITINLAEADDAERERRRVQMGEPYRTLLGHFRHEIGHYY-WDR 194 (343)
T ss_pred CCCCceEEecccC-CCCCCceeccCCceEEEEecccChHHHHHHHHHhccHHHHHHHHhcchhHHHH-HHH
Confidence 44455553 3443 24444444 4599998554322211112 2445699999999999 443
No 91
>TIGR02421 QEGLA conserved hypothetical protein. Members of this family include a possible metal-binding motif HEXXXH and, nearby, a perfectly conserved motif QEGLA. All members belong to the Proteobacteria, including Agrobacterium tumefaciens and several species of Vibrio and Pseudomonas, and are found in only one copy per chromosome (Vibrio vulnificus, with two chromosomes, has two). The function is unknown.
Probab=23.83 E-value=4.4e+02 Score=25.31 Aligned_cols=74 Identities=18% Similarity=0.255 Sum_probs=44.9
Q ss_pred eEEEEEec-cCCCceEEeeCCeEEEcchhhhcCCchhhhhHHHHHHHHhh-hhhhcc-CCCCC-------CCC--cchhh
Q 036780 78 QVDLFIDD-MKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEM-THVWQW-NGNNA-------PNI--GWLIE 145 (231)
Q Consensus 78 ~Vtl~l~d-~~~~GVA~t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~-~Hv~Q~-~~~g~-------~aP--~~liE 145 (231)
.+++.+.| + ---|..+|+.|.++.+. .++ +.++.+++.||+ ||+..- ||... +.| -..-|
T Consensus 155 ~~~V~~sd~l--~a~a~v~~~~l~i~~~a--~fs----~~~l~~L~~HEigvH~~T~~Ng~~Qp~~~l~~G~p~~t~tQE 226 (366)
T TIGR02421 155 TIRVTLSDDL--PAGAMVSGDKLKLNSDA--MFS----ERDLEALIHHEIGVHLLTTLNGRAQPLRLLSIGLPGYTATQE 226 (366)
T ss_pred ceEEEECcch--hHHHhccCCeEEECCCC--CcC----HHHHHHHHHHhHHhhhhhccccccCchHHHhcCCCCCCCccH
Confidence 46665554 3 22345667789988765 222 346889999997 788753 44422 122 33567
Q ss_pred hHHHHHHHhhCcCC
Q 036780 146 GIADFVRLKANYVP 159 (231)
Q Consensus 146 GIADyVRl~ag~~~ 159 (231)
|+|-+--+..|..+
T Consensus 227 GLAvl~E~l~g~~~ 240 (366)
T TIGR02421 227 GLAILAEYLAGSMT 240 (366)
T ss_pred HHHHHHHHHhcCCC
Confidence 87777776666443
No 92
>smart00528 HNS Domain in histone-like proteins of HNS family.
Probab=23.81 E-value=42 Score=22.77 Aligned_cols=17 Identities=24% Similarity=0.767 Sum_probs=14.5
Q ss_pred ccCCCCCCCCcchhhhHH
Q 036780 131 QWNGNNAPNIGWLIEGIA 148 (231)
Q Consensus 131 Q~~~~g~~aP~~liEGIA 148 (231)
.|.|+|. .|.||.|-|+
T Consensus 20 tWsGrGr-~P~W~~~~l~ 36 (46)
T smart00528 20 TWSGRGR-TPRWLAAALD 36 (46)
T ss_pred cccCCCC-CCHHHHHHHH
Confidence 5999998 9999998654
No 93
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=23.71 E-value=36 Score=29.73 Aligned_cols=12 Identities=42% Similarity=0.731 Sum_probs=11.1
Q ss_pred HHHHHHhhhhhh
Q 036780 119 SGVMYHEMTHVW 130 (231)
Q Consensus 119 ~Gvl~HE~~Hv~ 130 (231)
.|++.|||.|+.
T Consensus 88 ~Gti~HEl~HaL 99 (200)
T cd04281 88 FGIVVHELGHVI 99 (200)
T ss_pred CchHHHHHHHHh
Confidence 599999999997
No 94
>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.
Probab=23.58 E-value=48 Score=27.50 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=11.9
Q ss_pred HHHHHHhhhhhhcc
Q 036780 119 SGVMYHEMTHVWQW 132 (231)
Q Consensus 119 ~Gvl~HE~~Hv~Q~ 132 (231)
..++.||+.|.+--
T Consensus 8 i~i~~HE~gH~~~a 21 (192)
T PF02163_consen 8 ISIVLHELGHALAA 21 (192)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccccccccccccc
Confidence 57899999999854
No 95
>COG4307 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.39 E-value=5.3e+02 Score=24.31 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=33.9
Q ss_pred CCceEEeeC---CeEEEcchhhhcCCchhhh-------hHHHHHHHHhhhhhhccCCCCCCCCcchhhhHHHHH
Q 036780 88 PGEIAFTSN---NGIHYGDDFIQNIPVDLIK-------QEFSGVMYHEMTHVWQWNGNNAPNIGWLIEGIADFV 151 (231)
Q Consensus 88 ~~GVA~t~g---~~I~~s~~~i~~~~~d~~~-------~ei~Gvl~HE~~Hv~Q~~~~g~~aP~~liEGIADyV 151 (231)
+.|..+.+| +-|.++..--.+...++++ +-+.|=+.||+.|.+ |+- ||-+=||++
T Consensus 131 p~~e~vmTGHd~GlItln~AEaDda~REq~Rvem~EpYRTlLGHFRHE~GHy~-~dr--------LI~d~a~~L 195 (349)
T COG4307 131 PAGENVMTGHDNGLITLNLAEADDAHREQLRVEMGEPYRTLLGHFRHEIGHYY-FDR--------LIADSADRL 195 (349)
T ss_pred CCCccccccccCceEEEeccccchHHHHHHHHHhCCcHHHHHhhhhhhhhhHH-HHH--------HHhhHHHHH
Confidence 567777776 3888875433222111222 345799999999987 544 666655555
No 96
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=23.35 E-value=94 Score=26.46 Aligned_cols=86 Identities=13% Similarity=0.132 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEEEe-cc-------CCCceEEeeCC-eEEEcchhhhcCCchhhhhHHHH
Q 036780 50 AKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFID-DM-------KPGEIAFTSNN-GIHYGDDFIQNIPVDLIKQEFSG 120 (231)
Q Consensus 50 a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~l~-d~-------~~~GVA~t~g~-~I~~s~~~i~~~~~d~~~~ei~G 120 (231)
+..+|..-..+..+.+ ...+.++.+.+.+.|+.. |+ ..-|.|+-.|- .-..+....+... +. ..-
T Consensus 69 ~~~~L~~F~~w~~~~~-~~~~~~~~~~D~a~llt~~d~~~~~~~~~~~G~A~~ggiC~~~~s~~i~~~~~---~~--~a~ 142 (207)
T cd04273 69 AQKSLKSFCRWQKKLN-PPNDSDPEHHDHAILLTRQDICRSNGNCDTLGLAPVGGMCSPSRSCSINEDTG---LS--SAF 142 (207)
T ss_pred HHHHHHHHHHHHHHcC-CcccccccccceEEEEeeecccccCCCCCceEEeccccCCCCCcceEEEcCCC---ce--eEE
Confidence 4567776666655444 233334455666666653 33 12456764431 0001111111111 11 234
Q ss_pred HHHHhhhhhh--ccCCCCCCCCc
Q 036780 121 VMYHEMTHVW--QWNGNNAPNIG 141 (231)
Q Consensus 121 vl~HE~~Hv~--Q~~~~g~~aP~ 141 (231)
+++|||.|.- ++|+.+..||.
T Consensus 143 ~~aHElGH~LG~~HD~~~~~C~~ 165 (207)
T cd04273 143 TIAHELGHVLGMPHDGDGNSCGP 165 (207)
T ss_pred eeeeechhhcCCCCCCCCCCCCC
Confidence 8999999998 66765323554
No 97
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=23.21 E-value=82 Score=26.48 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=20.1
Q ss_pred CeEEEcchhhh------cCCchhhhhHH-HHHHHHhhhhhhc
Q 036780 97 NGIHYGDDFIQ------NIPVDLIKQEF-SGVMYHEMTHVWQ 131 (231)
Q Consensus 97 ~~I~~s~~~i~------~~~~d~~~~ei-~Gvl~HE~~Hv~Q 131 (231)
+.|.+.+..+. +.| +.+.... --+|.|||+|.+-
T Consensus 9 N~i~ip~~~l~~P~f~~~~p-~~~~yg~lG~ilahel~hafd 49 (206)
T PF01431_consen 9 NSIVIPAGILQPPFFDPNYP-PALNYGGLGFILAHELMHAFD 49 (206)
T ss_dssp TEEEEEGGGSSTTT--TTS--HHHHHHTHHHHHHHHHHHCTS
T ss_pred CEEEecHHHhCCccCCCCCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 46777665443 223 3344443 3478999999883
No 98
>COG2321 Predicted metalloprotease [General function prediction only]
Probab=23.19 E-value=58 Score=30.35 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=28.0
Q ss_pred EEeeCC-eEEEcchhhhcC------CchhhhhHHHHHHHHhhhhhhcc
Q 036780 92 AFTSNN-GIHYGDDFIQNI------PVDLIKQEFSGVMYHEMTHVWQW 132 (231)
Q Consensus 92 A~t~g~-~I~~s~~~i~~~------~~d~~~~ei~Gvl~HE~~Hv~Q~ 132 (231)
=|..++ .+.|+.++.... ++| +..+- |+.||+-|..|.
T Consensus 137 FYCP~D~kvYlDlsFf~~m~~~fga~Gd-fAqaY--ViAHEVGHHVQn 181 (295)
T COG2321 137 FYCPADTKVYLDLSFFDEMKTKFGASGD-FAQAY--VIAHEVGHHVQN 181 (295)
T ss_pred eecCCCceEEEehhHHHHHHHHhcCCcc-HHHHH--HHHhhhhHHHHH
Confidence 344444 888998887643 245 77776 999999999993
No 99
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=21.29 E-value=43 Score=28.82 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=11.1
Q ss_pred HHHHHHhhhhhh
Q 036780 119 SGVMYHEMTHVW 130 (231)
Q Consensus 119 ~Gvl~HE~~Hv~ 130 (231)
.|++.||+.|+.
T Consensus 78 ~G~i~HEl~HaL 89 (182)
T cd04283 78 KGIIQHELLHAL 89 (182)
T ss_pred cchHHHHHHHHh
Confidence 599999999998
No 100
>KOG3714 consensus Meprin A metalloprotease [Posttranslational modification, protein turnover, chaperones]
Probab=21.02 E-value=41 Score=32.39 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=11.2
Q ss_pred HHHHHHhhhhhh
Q 036780 119 SGVMYHEMTHVW 130 (231)
Q Consensus 119 ~Gvl~HE~~Hv~ 130 (231)
.|++.|||+|+.
T Consensus 160 ~G~i~HEl~HaL 171 (411)
T KOG3714|consen 160 FGTIVHELMHAL 171 (411)
T ss_pred CchhHHHHHHHh
Confidence 599999999997
No 101
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=20.57 E-value=8e+02 Score=26.40 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=19.9
Q ss_pred CCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhh
Q 036780 96 NNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHV 129 (231)
Q Consensus 96 g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv 129 (231)
|.-|||.|+++.+..-. .-.-.-=+|.||-+|-
T Consensus 128 g~~i~~tp~~l~~~~~~-~~g~~~r~~VheWah~ 160 (863)
T TIGR00868 128 GEYIHFTPDFLLGKKLL-IYGPRGRVFVHEWAHL 160 (863)
T ss_pred CceEEEChHHhcCCccc-ccCcccchhhhhhhhh
Confidence 45999999999653210 0000112778888885
No 102
>COG5664 Predicted secreted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=20.26 E-value=6e+02 Score=22.38 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=18.6
Q ss_pred hccceEEEEEecCCCCCccchhHh
Q 036780 19 HGIHAVDYTVSNRAATTPGGMRFD 42 (231)
Q Consensus 19 ~~~~~~~~~v~n~a~~t~gg~rF~ 42 (231)
+.-|+|+...+=.-..+.|...++
T Consensus 26 agwkave~vktYaItG~sg~eLy~ 49 (201)
T COG5664 26 AGWKAVEQVKTYAITGQSGPELYD 49 (201)
T ss_pred ccceeeeeeeeEeecCCCcHHHHH
Confidence 456789988888777788877776
No 103
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=20.10 E-value=58 Score=31.94 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=20.9
Q ss_pred CeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhh
Q 036780 97 NGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVW 130 (231)
Q Consensus 97 ~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~ 130 (231)
.+|.+=-..+.+.. +.-..|+..|+.||+.|--
T Consensus 260 KRIvIyDtLl~~~~-~~~~eel~AVl~HELGHW~ 292 (428)
T KOG2719|consen 260 KRIVIYDTLLLEEE-HLNNEELVAVLAHELGHWK 292 (428)
T ss_pred ceEEEehhhhhhhh-ccccHHHHHHHHHHhhHHH
Confidence 37777555552100 1114789999999999943
Done!