Query 036782
Match_columns 166
No_of_seqs 139 out of 317
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 05:27:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 1.3E-51 2.8E-56 309.9 9.1 101 6-106 1-101 (101)
2 COG3416 Uncharacterized protei 81.8 5.5 0.00012 34.6 6.6 64 48-111 13-76 (233)
3 PF13334 DUF4094: Domain of un 78.6 2 4.4E-05 32.2 2.6 24 82-105 72-95 (95)
4 PF09006 Surfac_D-trimer: Lung 71.5 11 0.00024 25.4 4.4 26 85-110 1-26 (46)
5 PF09849 DUF2076: Uncharacteri 71.4 17 0.00036 31.6 6.8 60 49-108 14-73 (247)
6 PF11333 DUF3135: Protein of u 69.2 19 0.0004 26.5 5.7 66 30-99 15-82 (83)
7 PF07106 TBPIP: Tat binding pr 62.8 9.7 0.00021 30.1 3.4 81 30-110 18-106 (169)
8 PF10883 DUF2681: Protein of u 56.4 13 0.00028 27.8 2.9 32 85-116 32-63 (87)
9 PF05308 Mito_fiss_reg: Mitoch 56.0 15 0.00033 31.9 3.7 24 90-113 122-145 (253)
10 PF06698 DUF1192: Protein of u 53.8 28 0.0006 24.3 4.0 26 85-110 23-48 (59)
11 PRK10265 chaperone-modulator p 51.4 35 0.00075 25.3 4.5 31 79-109 67-97 (101)
12 PF12325 TMF_TATA_bd: TATA ele 46.6 47 0.001 25.9 4.8 33 80-112 13-45 (120)
13 PLN02523 galacturonosyltransfe 45.2 72 0.0016 31.1 6.7 54 49-107 145-200 (559)
14 PF12097 DUF3573: Protein of u 44.6 27 0.00058 32.5 3.5 22 84-105 43-64 (383)
15 PF03242 LEA_3: Late embryogen 44.4 8.2 0.00018 29.0 0.3 20 67-86 58-77 (93)
16 PRK00888 ftsB cell division pr 44.3 47 0.001 25.0 4.3 31 79-109 21-53 (105)
17 COG5509 Uncharacterized small 40.9 54 0.0012 23.5 3.9 23 86-108 28-50 (65)
18 PF14282 FlxA: FlxA-like prote 40.7 60 0.0013 24.3 4.4 24 85-108 53-76 (106)
19 PF06305 DUF1049: Protein of u 40.6 58 0.0013 21.6 4.0 24 86-109 44-67 (68)
20 PF04728 LPP: Lipoprotein leuc 40.5 72 0.0016 22.2 4.4 22 85-106 12-33 (56)
21 PF13591 MerR_2: MerR HTH fami 40.2 36 0.00078 24.3 3.0 23 81-103 61-83 (84)
22 PF06818 Fez1: Fez1; InterPro 39.9 51 0.0011 28.2 4.3 30 82-111 9-38 (202)
23 PF04977 DivIC: Septum formati 39.6 84 0.0018 21.0 4.7 27 85-111 19-45 (80)
24 cd04766 HTH_HspR Helix-Turn-He 38.8 60 0.0013 23.0 4.0 23 85-107 67-89 (91)
25 PRK10803 tol-pal system protei 37.7 54 0.0012 28.1 4.2 27 83-109 54-80 (263)
26 PRK00451 glycine dehydrogenase 37.2 30 0.00065 30.6 2.7 35 24-59 2-36 (447)
27 cd01111 HTH_MerD Helix-Turn-He 37.0 1.1E+02 0.0023 22.8 5.3 29 81-109 78-106 (107)
28 PRK00295 hypothetical protein; 36.7 1.4E+02 0.003 20.9 5.5 27 84-110 27-53 (68)
29 PF04706 Dickkopf_N: Dickkopf 36.3 17 0.00037 24.6 0.8 16 5-20 21-36 (52)
30 PF15397 DUF4618: Domain of un 34.2 67 0.0015 28.3 4.3 56 46-109 52-107 (258)
31 KOG4552 Vitamin-D-receptor int 34.1 1.3E+02 0.0029 26.5 6.1 57 37-101 47-106 (272)
32 PHA02562 46 endonuclease subun 33.9 66 0.0014 29.3 4.4 25 23-47 141-165 (562)
33 PRK00736 hypothetical protein; 33.5 1.6E+02 0.0034 20.6 5.3 27 84-110 27-53 (68)
34 PF05120 GvpG: Gas vesicle pro 32.9 53 0.0011 24.0 3.0 37 77-113 8-44 (79)
35 PF04977 DivIC: Septum formati 32.1 99 0.0021 20.7 4.1 26 84-109 25-50 (80)
36 PRK09039 hypothetical protein; 31.8 75 0.0016 28.4 4.3 26 83-108 137-162 (343)
37 PF15300 INT_SG_DDX_CT_C: INTS 31.6 45 0.00097 23.7 2.3 27 45-71 23-51 (65)
38 PF14282 FlxA: FlxA-like prote 31.4 65 0.0014 24.1 3.3 25 89-113 50-74 (106)
39 PF13600 DUF4140: N-terminal d 31.2 1E+02 0.0022 22.2 4.3 31 81-111 68-98 (104)
40 TIGR03021 pilP_fam type IV pil 31.0 82 0.0018 24.4 3.9 27 82-108 4-30 (119)
41 PF07334 IFP_35_N: Interferon- 30.0 92 0.002 22.9 3.8 25 85-109 2-26 (76)
42 PRK02793 phi X174 lysis protei 29.5 1.9E+02 0.0041 20.4 5.3 27 84-110 30-56 (72)
43 PF08657 DASH_Spc34: DASH comp 27.9 2E+02 0.0044 25.1 6.2 36 75-110 172-207 (259)
44 PF04508 Pox_A_type_inc: Viral 27.6 1.1E+02 0.0023 17.9 3.0 18 85-102 3-20 (23)
45 PF12325 TMF_TATA_bd: TATA ele 26.1 1.4E+02 0.0031 23.2 4.5 28 83-110 30-57 (120)
46 PRK00846 hypothetical protein; 24.7 2.5E+02 0.0054 20.5 5.3 28 83-110 34-61 (77)
47 PHA02047 phage lambda Rz1-like 24.7 1.7E+02 0.0037 22.7 4.6 22 89-110 33-54 (101)
48 PLN02742 Probable galacturonos 24.3 2.7E+02 0.0059 27.1 6.8 47 57-107 132-178 (534)
49 PRK15396 murein lipoprotein; P 24.1 1.3E+02 0.0027 22.1 3.6 27 84-110 26-52 (78)
50 PF04102 SlyX: SlyX; InterPro 23.4 1.2E+02 0.0026 21.0 3.3 25 85-109 27-51 (69)
51 smart00338 BRLZ basic region l 23.2 2.4E+02 0.0051 18.8 4.7 27 83-109 33-59 (65)
52 PF11853 DUF3373: Protein of u 22.6 94 0.002 29.8 3.4 31 76-107 18-48 (489)
53 PF04728 LPP: Lipoprotein leuc 22.3 2E+02 0.0044 20.0 4.1 25 84-108 18-42 (56)
54 PF08227 DASH_Hsk3: DASH compl 22.1 2.2E+02 0.0047 18.9 4.1 25 84-108 3-27 (45)
55 PRK10884 SH3 domain-containing 21.5 1.5E+02 0.0033 24.9 4.1 28 85-112 134-161 (206)
56 PRK04325 hypothetical protein; 21.3 3.1E+02 0.0067 19.4 5.5 27 84-110 31-57 (74)
57 smart00150 SPEC Spectrin repea 21.1 2.5E+02 0.0055 18.4 4.9 37 75-111 23-59 (101)
58 PF05308 Mito_fiss_reg: Mitoch 21.0 1E+02 0.0022 26.9 3.0 31 81-115 120-150 (253)
59 PF00172 Zn_clus: Fungal Zn(2) 20.9 55 0.0012 20.1 1.1 15 5-19 1-15 (40)
60 PF14653 IGFL: Insulin growth 20.7 52 0.0011 24.9 1.1 14 15-28 43-56 (89)
61 PF15483 DUF4641: Domain of un 20.7 1.1E+02 0.0023 29.3 3.3 29 78-107 414-442 (445)
62 PF11336 DUF3138: Protein of u 20.6 1.2E+02 0.0027 29.2 3.7 27 83-109 25-51 (514)
63 TIGR02209 ftsL_broad cell divi 20.5 1.9E+02 0.004 19.9 3.8 24 86-109 27-50 (85)
64 PF04012 PspA_IM30: PspA/IM30 20.1 2.5E+02 0.0055 22.7 5.1 40 61-107 8-47 (221)
65 PF13600 DUF4140: N-terminal d 20.1 1.9E+02 0.0041 20.8 3.9 26 84-109 78-103 (104)
66 PRK10963 hypothetical protein; 20.0 3E+02 0.0065 22.9 5.6 54 45-107 6-61 (223)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=1.3e-51 Score=309.85 Aligned_cols=101 Identities=69% Similarity=1.186 Sum_probs=99.5
Q ss_pred CChhhhhhhcCCCCCCccCCCCCCCChhhHHHHHHhhchhhHHHHHhcCCCcchhHHHHHHHHHhhhcccCCCCcchHHH
Q 036782 6 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAI 85 (166)
Q Consensus 6 ~CAACK~lRRrC~~~C~~APyFPa~~~~~F~~vhkvFG~snv~kmL~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I 85 (166)
+|||||||||||+++|+||||||++++++|++||||||++||+|||+++|+++|+++|+||+|||++|.+||||||+|+|
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i 80 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII 80 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036782 86 SFLQNQVSQLQMQLAVAEAEI 106 (166)
Q Consensus 86 ~~Lq~qi~~lq~eL~~~q~el 106 (166)
+.|++||.++++||+.++++|
T Consensus 81 ~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 81 SQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999875
No 2
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.78 E-value=5.5 Score=34.64 Aligned_cols=64 Identities=19% Similarity=0.225 Sum_probs=55.9
Q ss_pred HHHHhcCCCcchhHHHHHHHHHhhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036782 48 SKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQM 111 (166)
Q Consensus 48 ~kmL~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~~ 111 (166)
..-|+......|+..+..||-||-++.-|--|=-+-.|..+++-|..++.+|+.++.+|+.++.
T Consensus 13 f~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~ 76 (233)
T COG3416 13 FHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQA 76 (233)
T ss_pred HHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345666677899999999999999999999999999999999999999999999998887765
No 3
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=78.58 E-value=2 Score=32.19 Aligned_cols=24 Identities=46% Similarity=0.545 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 82 VGAISFLQNQVSQLQMQLAVAEAE 105 (166)
Q Consensus 82 vG~I~~Lq~qi~~lq~eL~~~q~e 105 (166)
.-.|..|...|..||+||+.||++
T Consensus 72 h~aIq~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 72 HEAIQSLDKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346788999999999999998864
No 4
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=71.48 E-value=11 Score=25.41 Aligned_cols=26 Identities=31% Similarity=0.266 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 85 ISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 85 I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
|..|.+||..|+.++...|+.+..++
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999998887664
No 5
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=71.40 E-value=17 Score=31.65 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=53.8
Q ss_pred HHHhcCCCcchhHHHHHHHHHhhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 49 KMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILC 108 (166)
Q Consensus 49 kmL~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~ 108 (166)
.-|+.++...|+.-+..||-|+-.|.-|-+|=-+=.|..++.-|++++++++.++++|..
T Consensus 14 ~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 14 SRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347777877899999999999999999999999999999999999999999998888855
No 6
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=69.15 E-value=19 Score=26.51 Aligned_cols=66 Identities=20% Similarity=0.364 Sum_probs=49.8
Q ss_pred CChhhHHHHHHhhchhhHHHHHhcCCCcch--hHHHHHHHHHhhhcccCCCCcchHHHHHHHHHHHHHHHHH
Q 036782 30 DDPHKFAIVHKVFGASNVSKMLQELPVHQR--ADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQL 99 (166)
Q Consensus 30 ~~~~~F~~vhkvFG~snv~kmL~~lp~~~R--~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL 99 (166)
++|+.|....+ .-+-.++...|++.+ -.++.+=|==--.|.++|+..|+-+...+..++..+...|
T Consensus 15 ~dPe~fe~lr~----~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l~~~l 82 (83)
T PF11333_consen 15 NDPEAFEQLRQ----ELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKLNDAL 82 (83)
T ss_pred hCHHHHHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 56888876654 456678899997664 3445555555567889999999999999999998887655
No 7
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=62.84 E-value=9.7 Score=30.10 Aligned_cols=81 Identities=20% Similarity=0.233 Sum_probs=49.2
Q ss_pred CChhhHHHHHHhhchhhHHHHHhcCCCcch---hHHHHHHHHHhhhcccCCCCcc-----hHHHHHHHHHHHHHHHHHHH
Q 036782 30 DDPHKFAIVHKVFGASNVSKMLQELPVHQR---ADAVSSLVYEANARVRDPVYGC-----VGAISFLQNQVSQLQMQLAV 101 (166)
Q Consensus 30 ~~~~~F~~vhkvFG~snv~kmL~~lp~~~R---~~a~~SLvYEA~aR~rDPVyGc-----vG~I~~Lq~qi~~lq~eL~~ 101 (166)
+-..-|.|+|.-||-..|.|.|..|-...+ ...=.+.||=++--.-+-+..- =.-|..|+.++..++.++..
T Consensus 18 s~~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~ 97 (169)
T PF07106_consen 18 SAQDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKS 97 (169)
T ss_pred cHHHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334568999999999999999998865433 1122445665554333211111 22456666666666666666
Q ss_pred HHHHHHHHh
Q 036782 102 AEAEILCIQ 110 (166)
Q Consensus 102 ~q~el~~~~ 110 (166)
++++|..+.
T Consensus 98 l~~eL~~L~ 106 (169)
T PF07106_consen 98 LEAELASLS 106 (169)
T ss_pred HHHHHHHHh
Confidence 666666543
No 8
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=56.42 E-value=13 Score=27.78 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 036782 85 ISFLQNQVSQLQMQLAVAEAEILCIQMQQEPM 116 (166)
Q Consensus 85 I~~Lq~qi~~lq~eL~~~q~el~~~~~~~~~~ 116 (166)
+..|+.+.++++.|.+.+++++..++.++.+-
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkne 63 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAKVRQKNE 63 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 66788888888888888889988887776543
No 9
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=56.04 E-value=15 Score=31.91 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q 036782 90 NQVSQLQMQLAVAEAEILCIQMQQ 113 (166)
Q Consensus 90 ~qi~~lq~eL~~~q~el~~~~~~~ 113 (166)
++|..||.||+.+|++|+.|=..|
T Consensus 122 qKIsALEdELs~LRaQIA~IV~~q 145 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIVAAQ 145 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 678889999999999999875444
No 10
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=53.83 E-value=28 Score=24.34 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 85 ISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 85 I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
|-.|+..|..|++|++.+++++..-+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888888888887543
No 11
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=51.38 E-value=35 Score=25.30 Aligned_cols=31 Identities=6% Similarity=0.154 Sum_probs=26.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 79 YGCVGAISFLQNQVSQLQMQLAVAEAEILCI 109 (166)
Q Consensus 79 yGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~ 109 (166)
+-.+++|..|-.+|+.|+.|+...+..|..+
T Consensus 67 ~~gialvl~LLd~i~~Lr~el~~L~~~l~~~ 97 (101)
T PRK10265 67 WPGIAVALTLLDEIAHLKQENRLLRQRLSRF 97 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999999988654
No 12
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=46.64 E-value=47 Score=25.88 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=24.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036782 80 GCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQ 112 (166)
Q Consensus 80 GcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~~~ 112 (166)
..+++|..|+.+|..++.|+..++.++.....+
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~ 45 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAE 45 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888887766433
No 13
>PLN02523 galacturonosyltransferase
Probab=45.25 E-value=72 Score=31.14 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=43.6
Q ss_pred HHHhcCCC--cchhHHHHHHHHHhhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 49 KMLQELPV--HQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEIL 107 (166)
Q Consensus 49 kmL~~lp~--~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~ 107 (166)
..+++||+ .+|..+|+.++++|.. .|-|..+|.+|+..|..+++++..++.+-+
T Consensus 145 ~~~~~~~~~~~~~~k~~~~~~~~a~~-----~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~ 200 (559)
T PLN02523 145 DVLRQFEKEVKERVKVARQMIAESKE-----SFDNQLKIQKLKDTIFAVNEQLTKAKKNGA 200 (559)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577774 5678899999999983 455678999999999999999998876643
No 14
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=44.59 E-value=27 Score=32.49 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036782 84 AISFLQNQVSQLQMQLAVAEAE 105 (166)
Q Consensus 84 ~I~~Lq~qi~~lq~eL~~~q~e 105 (166)
.|..||+||..||.||..++.+
T Consensus 43 ~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 43 EISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4677788888877777766555
No 15
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=44.45 E-value=8.2 Score=29.04 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=16.3
Q ss_pred HHHhhhcccCCCCcchHHHH
Q 036782 67 VYEANARVRDPVYGCVGAIS 86 (166)
Q Consensus 67 vYEA~aR~rDPVyGcvG~I~ 86 (166)
-.|-..|++|||-|++--..
T Consensus 58 ~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred cccccccccCCCCccccCCC
Confidence 56778999999999986554
No 16
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=44.31 E-value=47 Score=25.02 Aligned_cols=31 Identities=23% Similarity=0.128 Sum_probs=19.5
Q ss_pred CcchH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 79 YGCVG--AISFLQNQVSQLQMQLAVAEAEILCI 109 (166)
Q Consensus 79 yGcvG--~I~~Lq~qi~~lq~eL~~~q~el~~~ 109 (166)
+|--| .+..++++++.++.+++.++++...+
T Consensus 21 ~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L 53 (105)
T PRK00888 21 FGKNGILDYWRVNDQVAAQQQTNAKLKARNDQL 53 (105)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 35667777777777777666665543
No 17
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=40.87 E-value=54 Score=23.48 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036782 86 SFLQNQVSQLQMQLAVAEAEILC 108 (166)
Q Consensus 86 ~~Lq~qi~~lq~eL~~~q~el~~ 108 (166)
-.|.+.|..||.|++.+++|++.
T Consensus 28 ~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 28 AELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677777777777666654
No 18
>PF14282 FlxA: FlxA-like protein
Probab=40.65 E-value=60 Score=24.32 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 85 ISFLQNQVSQLQMQLAVAEAEILC 108 (166)
Q Consensus 85 I~~Lq~qi~~lq~eL~~~q~el~~ 108 (166)
+..||.||..|+++|+.++.+...
T Consensus 53 ~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 53 IQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666665555544
No 19
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=40.56 E-value=58 Score=21.59 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 86 SFLQNQVSQLQMQLAVAEAEILCI 109 (166)
Q Consensus 86 ~~Lq~qi~~lq~eL~~~q~el~~~ 109 (166)
..++.++..++.+++.++.|+...
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556777888888888888777643
No 20
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=40.52 E-value=72 Score=22.16 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036782 85 ISFLQNQVSQLQMQLAVAEAEI 106 (166)
Q Consensus 85 I~~Lq~qi~~lq~eL~~~q~el 106 (166)
|+.|..+|++|..++..++.++
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665555544
No 21
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=40.16 E-value=36 Score=24.30 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 036782 81 CVGAISFLQNQVSQLQMQLAVAE 103 (166)
Q Consensus 81 cvG~I~~Lq~qi~~lq~eL~~~q 103 (166)
.+++|.+|-.+|+.|+.||...+
T Consensus 61 gi~lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 61 GIALILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 46889999999999999988765
No 22
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=39.93 E-value=51 Score=28.15 Aligned_cols=30 Identities=27% Similarity=0.494 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036782 82 VGAISFLQNQVSQLQMQLAVAEAEILCIQM 111 (166)
Q Consensus 82 vG~I~~Lq~qi~~lq~eL~~~q~el~~~~~ 111 (166)
.|-|+-|++|+.+.|+|++.--.||..++.
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ 38 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRA 38 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 588999999999999999876677765543
No 23
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=39.56 E-value=84 Score=21.02 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036782 85 ISFLQNQVSQLQMQLAVAEAEILCIQM 111 (166)
Q Consensus 85 I~~Lq~qi~~lq~eL~~~q~el~~~~~ 111 (166)
+..+++++..++.+++..+.+...++.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ 45 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKE 45 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777766655543
No 24
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=38.80 E-value=60 Score=23.03 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036782 85 ISFLQNQVSQLQMQLAVAEAEIL 107 (166)
Q Consensus 85 I~~Lq~qi~~lq~eL~~~q~el~ 107 (166)
|..|..+++.|+.+|+..++++-
T Consensus 67 ~l~l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 67 ILELEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33488899999998888887763
No 25
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=37.75 E-value=54 Score=28.14 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 83 GAISFLQNQVSQLQMQLAVAEAEILCI 109 (166)
Q Consensus 83 G~I~~Lq~qi~~lq~eL~~~q~el~~~ 109 (166)
..+..|++||+.++.|+..++-+|...
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~ 80 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQEN 80 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 356788999999999999888776643
No 26
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=37.18 E-value=30 Score=30.59 Aligned_cols=35 Identities=17% Similarity=0.509 Sum_probs=28.5
Q ss_pred CCCCCCCChhhHHHHHHhhchhhHHHHHhcCCCcch
Q 036782 24 APYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQR 59 (166)
Q Consensus 24 APyFPa~~~~~F~~vhkvFG~snv~kmL~~lp~~~R 59 (166)
-||.|.. ++.-...-+.||.++|-.+...+|.+.|
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 36 (447)
T PRK00451 2 MPYIPHT-EEDIREMLDAIGVKSIDELFADIPEELR 36 (447)
T ss_pred CCCCCCC-HHHHHHHHHHhCCCCHHHHHHhCCHHHH
Confidence 3899987 7788889999999999888877775444
No 27
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=36.97 E-value=1.1e+02 Score=22.78 Aligned_cols=29 Identities=7% Similarity=0.130 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 81 CVGAISFLQNQVSQLQMQLAVAEAEILCI 109 (166)
Q Consensus 81 cvG~I~~Lq~qi~~lq~eL~~~q~el~~~ 109 (166)
|...+..+..++++.+.+|..++.+|..+
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~~ 106 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAEM 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778888888888888888888887653
No 28
>PRK00295 hypothetical protein; Provisional
Probab=36.71 E-value=1.4e+02 Score=20.90 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 84 AISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 84 ~I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
+|...|++|..|+.+|.....++....
T Consensus 27 ~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 27 VLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556667777888888777777776654
No 29
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=36.34 E-value=17 Score=24.63 Aligned_cols=16 Identities=44% Similarity=1.119 Sum_probs=14.5
Q ss_pred CCChhhhhhhcCCCCC
Q 036782 5 SPCASCKLLRRRCAKD 20 (166)
Q Consensus 5 ~~CAACK~lRRrC~~~ 20 (166)
+.|..||-+|++|..|
T Consensus 21 ~~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 21 SKCLPCRKRRKRCTRD 36 (52)
T ss_pred ccChhhccCCCCCCCC
Confidence 6799999999999975
No 30
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=34.17 E-value=67 Score=28.32 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=38.2
Q ss_pred hHHHHHhcCCCcchhHHHHHHHHHhhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 46 NVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCI 109 (166)
Q Consensus 46 nv~kmL~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~ 109 (166)
+++.+|...+..+. +.+++=+-|...+.. --++.|++|+..|.+.+..++.|+...
T Consensus 52 ~~i~~le~~~~~~l-~~ak~eLqe~eek~e-------~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 52 TAIDILEYSNHKQL-QQAKAELQEWEEKEE-------SKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHccChHHH-HHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555665554433 344444555555443 468899999999999999999998754
No 31
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=34.13 E-value=1.3e+02 Score=26.51 Aligned_cols=57 Identities=18% Similarity=0.281 Sum_probs=38.0
Q ss_pred HHHHhhchh--hHHHHHhcCCC-cchhHHHHHHHHHhhhcccCCCCcchHHHHHHHHHHHHHHHHHHH
Q 036782 37 IVHKVFGAS--NVSKMLQELPV-HQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAV 101 (166)
Q Consensus 37 ~vhkvFG~s--nv~kmL~~lp~-~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~ 101 (166)
++-++|-.. -+.+||+-+|+ .+|+.+|+.|--+-+.|.+ .|.+||.++...+.-|+.
T Consensus 47 ~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~--------~IQqLqk~LK~aE~iLtt 106 (272)
T KOG4552|consen 47 NILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDE--------VIQQLQKNLKSAEVILTT 106 (272)
T ss_pred HHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHH
Confidence 444444332 34566666664 5689999988555555543 699999999988777765
No 32
>PHA02562 46 endonuclease subunit; Provisional
Probab=33.89 E-value=66 Score=29.32 Aligned_cols=25 Identities=16% Similarity=0.469 Sum_probs=13.0
Q ss_pred cCCCCCCCChhhHHHHHHhhchhhH
Q 036782 23 FAPYFPPDDPHKFAIVHKVFGASNV 47 (166)
Q Consensus 23 ~APyFPa~~~~~F~~vhkvFG~snv 47 (166)
|.|.++.....+-..+.++||.+..
T Consensus 141 f~~f~~~~~~er~~il~~l~~~~~~ 165 (562)
T PHA02562 141 YVPFMQLSAPARRKLVEDLLDISVL 165 (562)
T ss_pred hhhHhcCChHhHHHHHHHHhCCHHH
Confidence 3444444444555556666665543
No 33
>PRK00736 hypothetical protein; Provisional
Probab=33.52 E-value=1.6e+02 Score=20.61 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 84 AISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 84 ~I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
+|..-|++|..|+.+|.....++....
T Consensus 27 ~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 27 QLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566677777777777766665543
No 34
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=32.90 E-value=53 Score=24.04 Aligned_cols=37 Identities=24% Similarity=0.204 Sum_probs=20.5
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 036782 77 PVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQ 113 (166)
Q Consensus 77 PVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~~~~ 113 (166)
||.|.+-+.-+++.+.+.---.-+.++.+|...+++-
T Consensus 8 Pvrgv~wv~e~I~~~Ae~E~~Dp~~i~~~L~~L~~~~ 44 (79)
T PF05120_consen 8 PVRGVVWVAEQIQEQAERELYDPAAIRRELAELQEAL 44 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 5555555555555554433333456777777766543
No 35
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=32.11 E-value=99 Score=20.67 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 84 AISFLQNQVSQLQMQLAVAEAEILCI 109 (166)
Q Consensus 84 ~I~~Lq~qi~~lq~eL~~~q~el~~~ 109 (166)
.|..|+.+++.++.+....+.++...
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777777777766666654
No 36
>PRK09039 hypothetical protein; Validated
Probab=31.81 E-value=75 Score=28.42 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 83 GAISFLQNQVSQLQMQLAVAEAEILC 108 (166)
Q Consensus 83 G~I~~Lq~qi~~lq~eL~~~q~el~~ 108 (166)
..|..|++||+.|+.+|+.++++|..
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777776666553
No 37
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=31.58 E-value=45 Score=23.68 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=23.4
Q ss_pred hhHHHHHhcC--CCcchhHHHHHHHHHhh
Q 036782 45 SNVSKMLQEL--PVHQRADAVSSLVYEAN 71 (166)
Q Consensus 45 snv~kmL~~l--p~~~R~~a~~SLvYEA~ 71 (166)
+.|.++|+.+ |.+.|...+..++.||.
T Consensus 23 e~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 23 EKIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 4688889887 68899999999999995
No 38
>PF14282 FlxA: FlxA-like protein
Probab=31.43 E-value=65 Score=24.15 Aligned_cols=25 Identities=40% Similarity=0.429 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q 036782 89 QNQVSQLQMQLAVAEAEILCIQMQQ 113 (166)
Q Consensus 89 q~qi~~lq~eL~~~q~el~~~~~~~ 113 (166)
+.++..|+++|..++++|+.++.+.
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666655544
No 39
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=31.20 E-value=1e+02 Score=22.17 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036782 81 CVGAISFLQNQVSQLQMQLAVAEAEILCIQM 111 (166)
Q Consensus 81 cvG~I~~Lq~qi~~lq~eL~~~q~el~~~~~ 111 (166)
--..+..|+.+++.++.+++..++++.....
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 98 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEA 98 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447888889999998888888888766543
No 40
>TIGR03021 pilP_fam type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP.
Probab=31.00 E-value=82 Score=24.38 Aligned_cols=27 Identities=37% Similarity=0.396 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 82 VGAISFLQNQVSQLQMQLAVAEAEILC 108 (166)
Q Consensus 82 vG~I~~Lq~qi~~lq~eL~~~q~el~~ 108 (166)
+|-+..||.+...++++++.++++-..
T Consensus 4 ~~eLe~iQ~et~LleAq~~~akaq~el 30 (119)
T TIGR03021 4 VGQLEALQSETALLEAQLARAKAQNEL 30 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888899988888888776655443
No 41
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=29.96 E-value=92 Score=22.86 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 85 ISFLQNQVSQLQMQLAVAEAEILCI 109 (166)
Q Consensus 85 I~~Lq~qi~~lq~eL~~~q~el~~~ 109 (166)
|..|+.+..+|+.+|..+.+||...
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~ 26 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQN 26 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888887653
No 42
>PRK02793 phi X174 lysis protein; Provisional
Probab=29.50 E-value=1.9e+02 Score=20.39 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 84 AISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 84 ~I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
+|...|++|..|+.+|.....++....
T Consensus 30 ~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 30 TVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455667777777777777776666543
No 43
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=27.90 E-value=2e+02 Score=25.06 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=31.9
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 75 RDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 75 rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
.-|+.|.-.-|..|.++...+..+++..+++++...
T Consensus 172 vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~ 207 (259)
T PF08657_consen 172 VYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQE 207 (259)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 449999999999999999999999999999988643
No 44
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=27.59 E-value=1.1e+02 Score=17.90 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036782 85 ISFLQNQVSQLQMQLAVA 102 (166)
Q Consensus 85 I~~Lq~qi~~lq~eL~~~ 102 (166)
|..|+..|.+|+.+|+.-
T Consensus 3 ~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567888999999888754
No 45
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.13 E-value=1.4e+02 Score=23.18 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 83 GAISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 83 G~I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
|-|..|++++..++.+-..+.+||...-
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~ 57 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLM 57 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999988888888887653
No 46
>PRK00846 hypothetical protein; Provisional
Probab=24.71 E-value=2.5e+02 Score=20.47 Aligned_cols=28 Identities=4% Similarity=-0.117 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 83 GAISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 83 G~I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
.+|...+++|+.++.+|.....++...+
T Consensus 34 ~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 34 EALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777777777777777776655
No 47
>PHA02047 phage lambda Rz1-like protein
Probab=24.67 E-value=1.7e+02 Score=22.65 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 036782 89 QNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 89 q~qi~~lq~eL~~~q~el~~~~ 110 (166)
+...+++.++|+.++.++..+|
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q 54 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQ 54 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555443
No 48
>PLN02742 Probable galacturonosyltransferase
Probab=24.25 E-value=2.7e+02 Score=27.13 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=38.3
Q ss_pred cchhHHHHHHHHHhhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 57 HQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEIL 107 (166)
Q Consensus 57 ~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~ 107 (166)
+.+-.+|+.++++|.. =-|.|-.++.+|++.|..+++|+..++.+-+
T Consensus 132 ~~~~~~m~~~i~~ak~----~~~d~~~~~~klr~~l~~~e~~~~~~~~q~~ 178 (534)
T PLN02742 132 EPIIRDLAALIYQAQD----LHYDSATTIMTLKAHIQALEERANAATVQST 178 (534)
T ss_pred HHHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888864 3466999999999999999999998776643
No 49
>PRK15396 murein lipoprotein; Provisional
Probab=24.14 E-value=1.3e+02 Score=22.06 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 84 AISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 84 ~I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
-|.+|+.+|+.|..+...+..++...+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~ 52 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMR 52 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777766666655443
No 50
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.37 E-value=1.2e+02 Score=21.02 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 85 ISFLQNQVSQLQMQLAVAEAEILCI 109 (166)
Q Consensus 85 I~~Lq~qi~~lq~eL~~~q~el~~~ 109 (166)
|...+++|+.|+.+|.....+|...
T Consensus 27 v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 27 VTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556666666665555555543
No 51
>smart00338 BRLZ basic region leucin zipper.
Probab=23.19 E-value=2.4e+02 Score=18.79 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 83 GAISFLQNQVSQLQMQLAVAEAEILCI 109 (166)
Q Consensus 83 G~I~~Lq~qi~~lq~eL~~~q~el~~~ 109 (166)
+-|..|..+...|..++..++.++..+
T Consensus 33 ~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 33 RKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555443
No 52
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=22.60 E-value=94 Score=29.81 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=21.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 76 DPVYGCVGAISFLQNQVSQLQMQLAVAEAEIL 107 (166)
Q Consensus 76 DPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~ 107 (166)
.|.....--+..+| ||++|+.||+.+++++.
T Consensus 18 ~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 18 LPAAAMADDIDLLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred cchhhhhhhhHHHH-HHHHHHHHHHHHHHhhc
Confidence 34444444555555 88888888888888855
No 53
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=22.28 E-value=2e+02 Score=19.97 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 84 AISFLQNQVSQLQMQLAVAEAEILC 108 (166)
Q Consensus 84 ~I~~Lq~qi~~lq~eL~~~q~el~~ 108 (166)
-|..|++.|..++.++..|+.|-++
T Consensus 18 kvdqLs~dv~~lr~~v~~ak~EAaR 42 (56)
T PF04728_consen 18 KVDQLSSDVNALRADVQAAKEEAAR 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666543
No 54
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=22.08 E-value=2.2e+02 Score=18.89 Aligned_cols=25 Identities=36% Similarity=0.329 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 84 AISFLQNQVSQLQMQLAVAEAEILC 108 (166)
Q Consensus 84 ~I~~Lq~qi~~lq~eL~~~q~el~~ 108 (166)
-+++|..|+..|++-|+.+.+.+..
T Consensus 3 q~s~L~~qL~qL~aNL~~t~~~l~~ 27 (45)
T PF08227_consen 3 QYSHLASQLAQLQANLADTENLLEM 27 (45)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3678888888888888888777654
No 55
>PRK10884 SH3 domain-containing protein; Provisional
Probab=21.51 E-value=1.5e+02 Score=24.90 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036782 85 ISFLQNQVSQLQMQLAVAEAEILCIQMQ 112 (166)
Q Consensus 85 I~~Lq~qi~~lq~eL~~~q~el~~~~~~ 112 (166)
|..|+++.++|+.||+.+++++.....+
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6668888888888888888887654433
No 56
>PRK04325 hypothetical protein; Provisional
Probab=21.26 E-value=3.1e+02 Score=19.41 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 84 AISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 84 ~I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
+|..-|++|..|+.+|..+..++....
T Consensus 31 vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 31 TVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566677777777776666665543
No 57
>smart00150 SPEC Spectrin repeats.
Probab=21.07 E-value=2.5e+02 Score=18.36 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=29.8
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036782 75 RDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQM 111 (166)
Q Consensus 75 rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~~ 111 (166)
.+|+.+.+..|..+.++...++.++...+..+.....
T Consensus 23 ~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~ 59 (101)
T smart00150 23 SEDLGKDLESVEALLKKHEALEAELEAHEERVEALNE 59 (101)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3566788999999999999999999888877776543
No 58
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=20.97 E-value=1e+02 Score=26.91 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 036782 81 CVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEP 115 (166)
Q Consensus 81 cvG~I~~Lq~qi~~lq~eL~~~q~el~~~~~~~~~ 115 (166)
...-|+.||.+|..|.+|||. |...|-++..
T Consensus 120 AlqKIsALEdELs~LRaQIA~----IV~~qe~~~~ 150 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQIAK----IVAAQEQSNS 150 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHhccccccc
Confidence 345789999999999999974 4445444433
No 59
>PF00172 Zn_clus: Fungal Zn(2)-Cys(6) binuclear cluster domain; InterPro: IPR001138 The N-terminal region of a number of fungal transcriptional regulatory proteins contains a Cys-rich motif that is involved in zinc-dependent binding of DNA. The region forms a binuclear Zn cluster, in which two Zn atoms are bound by six Cys residues [, ]. A wide range of proteins are known to contain this domain. These include the proteins involved in arginine, proline, pyrimidine, quinate, maltose and galactose metabolism; amide and GABA catabolism; leucine biosynthesis, amongst others.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1AJY_A 1ZME_C 2VEQ_A 1CLD_A 1PYI_B 1D66_A 3COQ_A 1AW6_A 2ER8_A 2ERE_A ....
Probab=20.92 E-value=55 Score=20.15 Aligned_cols=15 Identities=20% Similarity=0.764 Sum_probs=10.0
Q ss_pred CCChhhhhhhcCCCC
Q 036782 5 SPCASCKLLRRRCAK 19 (166)
Q Consensus 5 ~~CAACK~lRRrC~~ 19 (166)
.+|..|+..+.+|..
T Consensus 1 ~aC~~Cr~rK~kCd~ 15 (40)
T PF00172_consen 1 RACDRCRRRKVKCDG 15 (40)
T ss_dssp -SBHHHHHHTS--ST
T ss_pred CcChHHHhhCcCcCC
Confidence 368889888888875
No 60
>PF14653 IGFL: Insulin growth factor-like family
Probab=20.73 E-value=52 Score=24.87 Aligned_cols=14 Identities=43% Similarity=1.163 Sum_probs=12.9
Q ss_pred cCCCCCCccCCCCC
Q 036782 15 RRCAKDCIFAPYFP 28 (166)
Q Consensus 15 RrC~~~C~~APyFP 28 (166)
|+|.++|.|.|+|.
T Consensus 43 ~~Cg~~Ctf~pcfe 56 (89)
T PF14653_consen 43 RKCGPNCTFWPCFE 56 (89)
T ss_pred cccCCCCCccCccc
Confidence 77999999999996
No 61
>PF15483 DUF4641: Domain of unknown function (DUF4641)
Probab=20.70 E-value=1.1e+02 Score=29.26 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=22.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 78 VYGCVGAISFLQNQVSQLQMQLAVAEAEIL 107 (166)
Q Consensus 78 VyGcvG~I~~Lq~qi~~lq~eL~~~q~el~ 107 (166)
+-||-.-| -||++|++|++||+..|+-.-
T Consensus 414 ~qGCpRC~-~LQkEIedLreQLaamqsl~~ 442 (445)
T PF15483_consen 414 AQGCPRCL-VLQKEIEDLREQLAAMQSLAD 442 (445)
T ss_pred CCCCcccH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34666655 589999999999999886543
No 62
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=20.60 E-value=1.2e+02 Score=29.16 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 83 GAISFLQNQVSQLQMQLAVAEAEILCI 109 (166)
Q Consensus 83 G~I~~Lq~qi~~lq~eL~~~q~el~~~ 109 (166)
-.|..||.||..||.|...++++|+.-
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~laa~ 51 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKLAAK 51 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 457888999999999888888887653
No 63
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=20.53 E-value=1.9e+02 Score=19.90 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 86 SFLQNQVSQLQMQLAVAEAEILCI 109 (166)
Q Consensus 86 ~~Lq~qi~~lq~eL~~~q~el~~~ 109 (166)
..++.++..++.++..++++...+
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L 50 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDL 50 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444443
No 64
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=20.09 E-value=2.5e+02 Score=22.72 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 61 DAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEIL 107 (166)
Q Consensus 61 ~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~ 107 (166)
.++++-+-++--++.||. ..|.+.|.+++.+|..++..++
T Consensus 8 ~~~~a~~~~~ld~~EDP~-------~~l~q~ird~e~~l~~a~~~~a 47 (221)
T PF04012_consen 8 TLVKANINELLDKAEDPE-------KMLEQAIRDMEEQLRKARQALA 47 (221)
T ss_pred HHHHHHHHHHHHhhcCHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666766 3445555555555555554444
No 65
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=20.07 E-value=1.9e+02 Score=20.79 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 84 AISFLQNQVSQLQMQLAVAEAEILCI 109 (166)
Q Consensus 84 ~I~~Lq~qi~~lq~eL~~~q~el~~~ 109 (166)
.|..|+.++..++.++..+++++..+
T Consensus 78 ~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 78 ELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677888888888888877777643
No 66
>PRK10963 hypothetical protein; Provisional
Probab=20.01 E-value=3e+02 Score=22.90 Aligned_cols=54 Identities=28% Similarity=0.372 Sum_probs=32.8
Q ss_pred hhHHHHHhcCCC--cchhHHHHHHHHHhhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 45 SNVSKMLQELPV--HQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEIL 107 (166)
Q Consensus 45 snv~kmL~~lp~--~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~ 107 (166)
..|...|++=|. .+.++.+.. .++-.|..|. |+-.+.|++.|+.++...+.++.
T Consensus 6 ~~V~~yL~~~PdFf~~h~~Ll~~------L~lph~~~ga---VSL~ErQ~~~LR~r~~~Le~~l~ 61 (223)
T PRK10963 6 RAVVDYLLQNPDFFIRNARLVEQ------MRVPHPVRGT---VSLVEWQMARQRNHIHVLEEEMT 61 (223)
T ss_pred HHHHHHHHHCchHHhhCHHHHHh------ccCCCCCCCe---ecHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777774 666777764 4677786664 45445566655555555554443
Done!