Query 036782
Match_columns 166
No_of_seqs 139 out of 317
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 08:45:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 83.0 2 6.7E-05 25.9 4.0 28 83-110 2-29 (33)
2 2er8_A Regulatory protein Leu3 75.4 5.9 0.0002 25.7 5.0 21 83-103 49-69 (72)
3 1nkp_B MAX protein, MYC proto- 54.4 21 0.00072 24.2 4.7 31 82-112 46-76 (83)
4 1am9_A Srebp-1A, protein (ster 54.3 21 0.00073 24.5 4.7 29 82-110 49-77 (82)
5 1zme_C Proline utilization tra 51.6 14 0.00049 23.5 3.3 25 82-106 43-67 (70)
6 2ic9_A Nucleocapsid protein; h 48.4 22 0.00076 26.1 4.2 40 83-126 52-91 (96)
7 3ra3_B P2F; coiled coil domain 48.3 23 0.00078 20.5 3.4 25 85-109 2-26 (28)
8 3r4h_A Coiled coil helix CC-TE 47.2 31 0.001 20.7 3.9 28 83-110 2-29 (34)
9 4e61_A Protein BIM1; EB1-like 46.4 31 0.0011 25.7 4.8 29 80-108 1-29 (106)
10 2xdj_A Uncharacterized protein 40.8 43 0.0015 23.6 4.6 25 84-108 21-45 (83)
11 2qdq_A Talin-1; dimerisation d 40.3 51 0.0018 21.6 4.5 37 78-115 4-40 (50)
12 2z5i_A TM, general control pro 39.0 52 0.0018 21.2 4.4 27 84-110 13-39 (52)
13 1hlo_A Protein (transcription 38.9 29 0.001 23.5 3.4 24 82-105 56-79 (80)
14 2zvf_A Alanyl-tRNA synthetase; 36.4 1.1E+02 0.0037 22.6 6.5 47 64-110 13-59 (171)
15 2l5g_B Putative uncharacterize 35.1 60 0.002 20.6 4.1 27 87-113 6-32 (42)
16 1uuj_A Platelet-activating fac 33.3 18 0.00062 26.0 1.6 24 85-108 60-83 (88)
17 4fi5_A Nucleoprotein; structur 33.1 34 0.0012 25.8 3.2 23 82-104 68-90 (113)
18 2dgc_A Protein (GCN4); basic d 32.4 87 0.003 20.6 4.8 29 83-111 30-58 (63)
19 3nmd_A CGMP dependent protein 31.1 71 0.0024 22.2 4.3 28 83-110 40-67 (72)
20 1rtm_1 Mannose-binding protein 30.6 55 0.0019 23.2 3.9 20 85-104 6-25 (149)
21 1dh3_A Transcription factor CR 30.1 94 0.0032 19.9 4.6 28 83-110 22-49 (55)
22 3mud_A DNA repair protein XRCC 28.8 75 0.0026 25.5 4.7 44 56-110 119-162 (175)
23 1gk6_A Vimentin; intermediate 28.8 74 0.0025 20.6 4.0 22 87-108 4-25 (59)
24 2k48_A Nucleoprotein; viral pr 28.6 64 0.0022 24.1 4.0 22 83-104 82-103 (107)
25 2ic6_A Nucleocapsid protein; h 28.2 71 0.0024 22.6 4.0 23 82-104 51-73 (78)
26 1x8y_A Lamin A/C; structural p 27.6 84 0.0029 21.7 4.3 38 64-108 16-53 (86)
27 2pbi_A Regulator of G-protein 27.2 52 0.0018 29.2 3.8 69 33-101 144-237 (424)
28 3myf_A Sensor protein; HPT, hi 27.2 1.7E+02 0.0058 20.8 6.2 63 34-104 52-114 (119)
29 3pbf_A Pulmonary surfactant-as 26.7 49 0.0017 23.2 3.0 23 84-106 3-25 (148)
30 1gk4_A Vimentin; intermediate 25.9 95 0.0033 21.3 4.3 39 63-108 13-51 (84)
31 2yy0_A C-MYC-binding protein; 25.0 1.2E+02 0.0041 19.4 4.4 27 84-110 20-46 (53)
32 2p9x_A Hypothetical protein PH 24.7 24 0.00082 26.1 1.0 15 30-44 44-59 (99)
33 1nlw_A MAD protein, MAX dimeri 24.3 1.3E+02 0.0044 20.6 4.7 29 82-110 46-74 (80)
34 1avy_A Fibritin, gpwac M; bact 24.2 1.9E+02 0.0064 20.3 5.9 44 85-132 17-60 (74)
35 3azd_A Short alpha-tropomyosin 24.1 18 0.0006 22.0 0.2 25 85-109 6-30 (37)
36 1zxa_A CGMP-dependent protein 24.0 1.1E+02 0.0038 20.9 4.3 28 84-111 26-53 (67)
37 3i00_A HIP-I, huntingtin-inter 23.8 80 0.0027 23.5 3.8 21 83-103 40-60 (120)
38 1jcd_A Major outer membrane li 23.7 1.2E+02 0.004 19.7 4.1 18 87-104 15-32 (52)
39 2xv5_A Lamin-A/C; structural p 22.9 1.2E+02 0.0041 20.8 4.3 23 86-108 8-30 (74)
40 1buu_A Protein (mannose-bindin 22.8 70 0.0024 23.4 3.3 21 84-104 24-44 (168)
41 3viq_B Mating-type switching p 22.7 53 0.0018 23.5 2.5 25 87-111 5-29 (85)
42 2k48_A Nucleoprotein; viral pr 22.6 1.1E+02 0.0038 22.8 4.3 30 82-111 34-63 (107)
43 2wg5_A General control protein 22.5 1E+02 0.0035 22.1 4.1 28 85-112 9-36 (109)
44 1ic2_A Tropomyosin alpha chain 21.8 1.4E+02 0.0047 20.2 4.4 46 59-108 21-66 (81)
45 2wt7_A Proto-oncogene protein 21.1 1.5E+02 0.0052 19.1 4.4 24 85-108 25-48 (63)
46 1a93_B MAX protein, coiled coi 21.0 1.4E+02 0.0049 18.0 3.8 23 85-107 9-31 (34)
47 3dzy_D Peroxisome proliferator 20.7 41 0.0014 29.1 1.9 22 3-24 66-97 (419)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=82.98 E-value=2 Score=25.87 Aligned_cols=28 Identities=25% Similarity=0.492 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 83 GAISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 83 G~I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
|.|..|+++|..|+.|++..+-||+.+.
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999988654
No 2
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=75.37 E-value=5.9 Score=25.68 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036782 83 GAISFLQNQVSQLQMQLAVAE 103 (166)
Q Consensus 83 G~I~~Lq~qi~~lq~eL~~~q 103 (166)
+.|..|+++|+.|+..|..+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 677788888888888776544
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=54.44 E-value=21 Score=24.23 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036782 82 VGAISFLQNQVSQLQMQLAVAEAEILCIQMQ 112 (166)
Q Consensus 82 vG~I~~Lq~qi~~lq~eL~~~q~el~~~~~~ 112 (166)
+-.|..|+.++..++.++...+.+...++.+
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999998888887766543
No 4
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=54.28 E-value=21 Score=24.49 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 82 VGAISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 82 vG~I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
+-.|..|+.++..|+.+...++.++...+
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 57789999999999999998888876543
No 5
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=51.58 E-value=14 Score=23.47 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 82 VGAISFLQNQVSQLQMQLAVAEAEI 106 (166)
Q Consensus 82 vG~I~~Lq~qi~~lq~eL~~~q~el 106 (166)
-+.|..|+.+|..|+.+|+.++..|
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999999998887765
No 6
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=48.38 E-value=22 Score=26.15 Aligned_cols=40 Identities=33% Similarity=0.514 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q 036782 83 GAISFLQNQVSQLQMQLAVAEAEILCIQMQQEPMMPTPQIDPDD 126 (166)
Q Consensus 83 G~I~~Lq~qi~~lq~eL~~~q~el~~~~~~~~~~~~~~~~~~~~ 126 (166)
+.|+.||..|.+|+.+|+.+.++=. +...+.-| +.+.|||
T Consensus 52 ~~V~~lq~Ki~elkr~lAd~v~~~k---~~~k~~Dp-TG~EpdD 91 (96)
T 2ic9_A 52 AAVSALETKLGELKRELADLIAAQK---LASKPVDP-TGIEPDD 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---C---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc---cccCCCCC-CCCCCcc
Confidence 6788899999999999888776322 33333333 5566664
No 7
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=48.34 E-value=23 Score=20.50 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 85 ISFLQNQVSQLQMQLAVAEAEILCI 109 (166)
Q Consensus 85 I~~Lq~qi~~lq~eL~~~q~el~~~ 109 (166)
|..|++.-..|+.|++...-||+.+
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 5678888899999999888888754
No 8
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=47.24 E-value=31 Score=20.74 Aligned_cols=28 Identities=18% Similarity=0.453 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 83 GAISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 83 G~I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
|.+..+++++..++.||+..+-|++.+.
T Consensus 2 gelaaikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 2 GELAAIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678888888888888888888765
No 9
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=46.42 E-value=31 Score=25.67 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=18.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 80 GCVGAISFLQNQVSQLQMQLAVAEAEILC 108 (166)
Q Consensus 80 GcvG~I~~Lq~qi~~lq~eL~~~q~el~~ 108 (166)
|..|.+..|+.++...+.+++...+++..
T Consensus 1 ~~~~s~~al~~eL~~~~~ei~~L~~ei~e 29 (106)
T 4e61_A 1 GPLGSLVAIQAELTKSQETIGSLNEEIEQ 29 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777666666666665555443
No 10
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=40.78 E-value=43 Score=23.56 Aligned_cols=25 Identities=24% Similarity=0.229 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 84 AISFLQNQVSQLQMQLAVAEAEILC 108 (166)
Q Consensus 84 ~I~~Lq~qi~~lq~eL~~~q~el~~ 108 (166)
.+..|++||+.++.|++.++.++-.
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~ 45 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQE 45 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4567888888888888777665543
No 11
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=40.35 E-value=51 Score=21.59 Aligned_cols=37 Identities=24% Similarity=0.213 Sum_probs=24.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 036782 78 VYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQMQQEP 115 (166)
Q Consensus 78 VyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~~~~~~ 115 (166)
|.|-+-.|.. |..|-..+.||..|+..|+.++.++-.
T Consensus 4 v~~~aqEi~A-qe~iLr~ErELEeAr~~La~iR~~kY~ 40 (50)
T 2qdq_A 4 VGGIAQIIAA-QEEMLRKERELEEARKKLAQIRQQQYK 40 (50)
T ss_dssp -CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444433 667777889999999999998766533
No 12
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=38.96 E-value=52 Score=21.17 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 84 AISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 84 ~I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
.|.+|+..|++|+.+|...+.+...++
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~ 39 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAIS 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 578999999999999998887766553
No 13
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=38.90 E-value=29 Score=23.45 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 82 VGAISFLQNQVSQLQMQLAVAEAE 105 (166)
Q Consensus 82 vG~I~~Lq~qi~~lq~eL~~~q~e 105 (166)
+-.|..|++++..|+.++..++.+
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566888888888888887766543
No 14
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=36.41 E-value=1.1e+02 Score=22.58 Aligned_cols=47 Identities=11% Similarity=0.032 Sum_probs=33.1
Q ss_pred HHHHHHhhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 64 SSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 64 ~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
..++.+......-|..--...|..|+.++.+++.++..++.+++...
T Consensus 13 ~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 13 ERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555545456777788888888888888888888877654
No 15
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=35.07 E-value=60 Score=20.60 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 036782 87 FLQNQVSQLQMQLAVAEAEILCIQMQQ 113 (166)
Q Consensus 87 ~Lq~qi~~lq~eL~~~q~el~~~~~~~ 113 (166)
.|-|+|+.+-.|++.++.+|..+|-.+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788888888888888888776443
No 16
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=33.32 E-value=18 Score=26.05 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 85 ISFLQNQVSQLQMQLAVAEAEILC 108 (166)
Q Consensus 85 I~~Lq~qi~~lq~eL~~~q~el~~ 108 (166)
|-.||.+|.+|+.+++.+++|+..
T Consensus 60 ViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 60 VIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567999999999999999888853
No 17
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=33.07 E-value=34 Score=25.82 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 036782 82 VGAISFLQNQVSQLQMQLAVAEA 104 (166)
Q Consensus 82 vG~I~~Lq~qi~~lq~eL~~~q~ 104 (166)
-++|+.||.+|.+|+.+|+.+.+
T Consensus 68 ~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 68 EGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677788888888887776655
No 18
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=32.36 E-value=87 Score=20.63 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036782 83 GAISFLQNQVSQLQMQLAVAEAEILCIQM 111 (166)
Q Consensus 83 G~I~~Lq~qi~~lq~eL~~~q~el~~~~~ 111 (166)
..+..|+.++..|+.+-..+.+++..++.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888998888888888888876653
No 19
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.15 E-value=71 Score=22.24 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 83 GAISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 83 G~I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
..|..|+.+|+....++...+.+|-.++
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466677777777777777777765554
No 20
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=30.56 E-value=55 Score=23.18 Aligned_cols=20 Identities=10% Similarity=0.388 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036782 85 ISFLQNQVSQLQMQLAVAEA 104 (166)
Q Consensus 85 I~~Lq~qi~~lq~eL~~~q~ 104 (166)
|..|++++..|+..|...+.
T Consensus 6 l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 6 LANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44445555555555444443
No 21
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=30.10 E-value=94 Score=19.92 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 83 GAISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 83 G~I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
..|..|+.+|..|+.|-..++.++..++
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888888888888877654
No 22
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=28.82 E-value=75 Score=25.45 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=34.3
Q ss_pred CcchhHHHHHHHHHhhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 56 VHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 56 ~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
.+.|.++++-|+=.| ...|..||..++.|+.+|...+.+-..++
T Consensus 119 a~~paE~ireli~~A-----------ertV~kLqkeiD~LEDeL~~eKek~k~i~ 162 (175)
T 3mud_A 119 VENPAEVIRELICYC-----------LDTTAKNEKSIDDLEEKVAHAKEENLNMH 162 (175)
T ss_dssp CSCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777554 56789999999999999998888766553
No 23
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=28.77 E-value=74 Score=20.62 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036782 87 FLQNQVSQLQMQLAVAEAEILC 108 (166)
Q Consensus 87 ~Lq~qi~~lq~eL~~~q~el~~ 108 (166)
.+|..|..++++|..+++++..
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~ 25 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVAR 25 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666654
No 24
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=28.63 E-value=64 Score=24.14 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036782 83 GAISFLQNQVSQLQMQLAVAEA 104 (166)
Q Consensus 83 G~I~~Lq~qi~~lq~eL~~~q~ 104 (166)
++|+.||.+|.+|+.+|+.+.+
T Consensus 82 ~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 82 AAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888887655
No 25
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=28.18 E-value=71 Score=22.59 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 036782 82 VGAISFLQNQVSQLQMQLAVAEA 104 (166)
Q Consensus 82 vG~I~~Lq~qi~~lq~eL~~~q~ 104 (166)
-+.|+.||.+|.+|+.+|+.+.+
T Consensus 51 ~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 51 RAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 36788888888888888887655
No 26
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=27.61 E-value=84 Score=21.73 Aligned_cols=38 Identities=5% Similarity=0.036 Sum_probs=23.4
Q ss_pred HHHHHHhhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 64 SSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILC 108 (166)
Q Consensus 64 ~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~ 108 (166)
..-+-|+..|.. ..+..++.+|..++.+|+.+++++.+
T Consensus 16 e~~l~e~E~~~~-------~~l~~~q~~i~~lE~el~~~r~e~~~ 53 (86)
T 1x8y_A 16 EAKLRDLEDSLA-------RERDTSRRLLAEKEREMAEMRARMQQ 53 (86)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555432 24566777777777777777777654
No 27
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=27.18 E-value=52 Score=29.19 Aligned_cols=69 Identities=9% Similarity=0.105 Sum_probs=49.1
Q ss_pred hhHHHHHHhhchhhHHHHHhc---CCCcchhHHHHHHHHHhh----hcccCCCCcchHH------------------HHH
Q 036782 33 HKFAIVHKVFGASNVSKMLQE---LPVHQRADAVSSLVYEAN----ARVRDPVYGCVGA------------------ISF 87 (166)
Q Consensus 33 ~~F~~vhkvFG~snv~kmL~~---lp~~~R~~a~~SLvYEA~----aR~rDPVyGcvG~------------------I~~ 87 (166)
+.+..++|.|...+-.=++++ +.++++.+-..-+|.+.+ +++.-|+.||+-. +..
T Consensus 144 e~~~~l~~~~~~~w~~i~~qa~~q~~~~k~r~k~~r~v~~~qe~a~w~vhrp~pg~~~~~e~~~~~~~~~~~~~~~~~~~ 223 (424)
T 2pbi_A 144 ENYDFLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTVTA 223 (424)
T ss_dssp HHHHHHHHHTGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHSCCTTSCCTTCCCSCBSSCTTCCCCCCHHH
T ss_pred HHHhhhhhhhcCchHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhCCCCCCccccccccccccCccccccccHHH
Confidence 456677777776665555553 445555666677777665 7899999998743 467
Q ss_pred HHHHHHHHHHHHHH
Q 036782 88 LQNQVSQLQMQLAV 101 (166)
Q Consensus 88 Lq~qi~~lq~eL~~ 101 (166)
++.+|++|+.+|..
T Consensus 224 ~r~~veqLk~~l~~ 237 (424)
T 2pbi_A 224 VRKEIMYYQQALMR 237 (424)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcc
Confidence 89999999998853
No 28
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=27.17 E-value=1.7e+02 Score=20.79 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=39.2
Q ss_pred hHHHHHHhhchhhHHHHHhcCCCcchhHHHHHHHHHhhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 036782 34 KFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEA 104 (166)
Q Consensus 34 ~F~~vhkvFG~snv~kmL~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~ 104 (166)
-...+||+-|++..+.. | .. ..-+-..|..+|..+|+-..-..+..|..++..+..++....+
T Consensus 52 l~~~aHkLkGaa~~~Ga----~-~L---~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~ 114 (119)
T 3myf_A 52 MLSTIHKLHGASCYCGV----P-TT---QRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLS 114 (119)
T ss_dssp HHHHHHHHHHHHTTTTC----H-HH---HHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCH----H-HH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888765432 1 11 1223345677787788777777777777777777666554333
No 29
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=26.69 E-value=49 Score=23.21 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036782 84 AISFLQNQVSQLQMQLAVAEAEI 106 (166)
Q Consensus 84 ~I~~Lq~qi~~lq~eL~~~q~el 106 (166)
++..|++++..|+.+|..++..+
T Consensus 3 ~~e~l~~~~~~l~~~l~~~~~~~ 25 (148)
T 3pbf_A 3 LDEELQTELYEIKHQILQTMGVL 25 (148)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888888888777
No 30
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=25.87 E-value=95 Score=21.25 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=22.3
Q ss_pred HHHHHHHhhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 63 VSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILC 108 (166)
Q Consensus 63 ~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~ 108 (166)
...-+-|+..|... .+..++..|..++.+|..+++++.+
T Consensus 13 LE~~l~e~e~~~~~-------~~~~~q~~i~~lE~eL~~~r~e~~~ 51 (84)
T 1gk4_A 13 LERQMREMEENFAV-------EAANYQDTIGRLQDEIQNMKEEMAR 51 (84)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555433 3455666666666666666666654
No 31
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.99 E-value=1.2e+02 Score=19.44 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 84 AISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 84 ~I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
-+-.|+++++.|++++..+++++...+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666655443
No 32
>2p9x_A Hypothetical protein PH0832; pyrococcus horikoshii OT3, NPPSFA, national project on prote structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=24.68 E-value=24 Score=26.11 Aligned_cols=15 Identities=60% Similarity=1.097 Sum_probs=13.2
Q ss_pred CChhhH-HHHHHhhch
Q 036782 30 DDPHKF-AIVHKVFGA 44 (166)
Q Consensus 30 ~~~~~F-~~vhkvFG~ 44 (166)
++|++| ..|.++||.
T Consensus 44 eDP~kFkeaV~~LFGE 59 (99)
T 2p9x_A 44 DDPQKFKEAVSKLFGE 59 (99)
T ss_dssp HCHHHHHHHHHHHHCH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 689999 799999995
No 33
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=24.26 E-value=1.3e+02 Score=20.58 Aligned_cols=29 Identities=14% Similarity=0.031 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 82 VGAISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 82 vG~I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
+..|..|+++...++.+....+.+....+
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999888888777765543
No 34
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=24.16 E-value=1.9e+02 Score=20.27 Aligned_cols=44 Identities=9% Similarity=0.170 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcchhcc
Q 036782 85 ISFLQNQVSQLQMQLAVAEAEILCIQMQQEPMMPTPQIDPDDKSFLLQ 132 (166)
Q Consensus 85 I~~Lq~qi~~lq~eL~~~q~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (166)
|..+..++..++..|..++.++..+++...+.. .+-|.+.|...
T Consensus 17 iaa~~~ev~t~~~~l~~~e~~vqaL~~ag~ip~----AP~DG~~YVrk 60 (74)
T 1avy_A 17 IASVRQEVNTAKGNISSLQGDVQALQEAGYIPE----APRDGQAYVRK 60 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC----CCCSSCCEEEE
T ss_pred hhhhheeeccccchhhhhhhhhHHHHhcCCCCC----CCCCCceeEEe
Confidence 556778888888889999999988887655432 23454555444
No 35
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=24.09 E-value=18 Score=21.96 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 85 ISFLQNQVSQLQMQLAVAEAEILCI 109 (166)
Q Consensus 85 I~~Lq~qi~~lq~eL~~~q~el~~~ 109 (166)
|..++..|..++.++..++.++...
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~~ 30 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVARL 30 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777776666666554
No 36
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=24.05 E-value=1.1e+02 Score=20.87 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036782 84 AISFLQNQVSQLQMQLAVAEAEILCIQM 111 (166)
Q Consensus 84 ~I~~Lq~qi~~lq~eL~~~q~el~~~~~ 111 (166)
.|..|+..++.-+.++..++.+|..++.
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666554
No 37
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=23.77 E-value=80 Score=23.54 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036782 83 GAISFLQNQVSQLQMQLAVAE 103 (166)
Q Consensus 83 G~I~~Lq~qi~~lq~eL~~~q 103 (166)
-+|..|+.+|..|++||+..+
T Consensus 40 ~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 40 RVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999865
No 38
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=23.67 E-value=1.2e+02 Score=19.71 Aligned_cols=18 Identities=11% Similarity=0.040 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036782 87 FLQNQVSQLQMQLAVAEA 104 (166)
Q Consensus 87 ~Lq~qi~~lq~eL~~~q~ 104 (166)
.|-.+|++|+.+...++.
T Consensus 15 ~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 15 TANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 39
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=22.93 E-value=1.2e+02 Score=20.76 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036782 86 SFLQNQVSQLQMQLAVAEAEILC 108 (166)
Q Consensus 86 ~~Lq~qi~~lq~eL~~~q~el~~ 108 (166)
..++..|..++.+|..+++++..
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ 30 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQ 30 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666555543
No 40
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=22.80 E-value=70 Score=23.38 Aligned_cols=21 Identities=10% Similarity=0.363 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036782 84 AISFLQNQVSQLQMQLAVAEA 104 (166)
Q Consensus 84 ~I~~Lq~qi~~lq~eL~~~q~ 104 (166)
.|..|+.+|..|+.+|...+.
T Consensus 24 ~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 24 KLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 355555666666665555444
No 41
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=22.68 E-value=53 Score=23.49 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 036782 87 FLQNQVSQLQMQLAVAEAEILCIQM 111 (166)
Q Consensus 87 ~Lq~qi~~lq~eL~~~q~el~~~~~ 111 (166)
.|+..|..|+++++....+|.....
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555565555555555555443
No 42
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=22.57 E-value=1.1e+02 Score=22.81 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036782 82 VGAISFLQNQVSQLQMQLAVAEAEILCIQM 111 (166)
Q Consensus 82 vG~I~~Lq~qi~~lq~eL~~~q~el~~~~~ 111 (166)
.+-|..||..+...+.||..|+..|..-..
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~ 63 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEK 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999998876443
No 43
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=22.45 E-value=1e+02 Score=22.10 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036782 85 ISFLQNQVSQLQMQLAVAEAEILCIQMQ 112 (166)
Q Consensus 85 I~~Lq~qi~~lq~eL~~~q~el~~~~~~ 112 (166)
..+|+.++..++.++..++.|+..++..
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3578899999999999999999887653
No 44
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=21.78 E-value=1.4e+02 Score=20.19 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHhhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 59 RADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILC 108 (166)
Q Consensus 59 R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~ 108 (166)
|.+.+..-+-+++.|.. -.-.-|..|+..|..++.+|..+...+..
T Consensus 21 ~~~~~e~~l~~~e~~~~----~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSK----QLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444431 12245666777777777777776666554
No 45
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=21.14 E-value=1.5e+02 Score=19.12 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 85 ISFLQNQVSQLQMQLAVAEAEILC 108 (166)
Q Consensus 85 I~~Lq~qi~~lq~eL~~~q~el~~ 108 (166)
|..|+.++..|+.+-...+.+|..
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~ 48 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIAN 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555444444443
No 46
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=20.99 E-value=1.4e+02 Score=18.03 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036782 85 ISFLQNQVSQLQMQLAVAEAEIL 107 (166)
Q Consensus 85 I~~Lq~qi~~lq~eL~~~q~el~ 107 (166)
+...|+.|++|+.+-+.+..++-
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHH
Confidence 45678888888888777777663
No 47
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=20.70 E-value=41 Score=29.10 Aligned_cols=22 Identities=41% Similarity=0.960 Sum_probs=14.8
Q ss_pred CCCCChhhhhh-hc---------CCCCCCccC
Q 036782 3 GNSPCASCKLL-RR---------RCAKDCIFA 24 (166)
Q Consensus 3 ~~~~CAACK~l-RR---------rC~~~C~~A 24 (166)
|..+|.|||-. || +|..+|.+-
T Consensus 66 gv~~C~~C~~FFrR~~~~~~~~~~c~~~C~~~ 97 (419)
T 3dzy_D 66 GVHACEGCKGFFRRTIRLKLIYDRCDLNCRIH 97 (419)
T ss_dssp SSBCCHHHHHHHHHHHTTTCCCCCCCSCCCCC
T ss_pred CcccchhhhHHHccchhcccccccccCCCCcc
Confidence 44679999932 32 588888653
Done!