Query 036782
Match_columns 166
No_of_seqs 139 out of 317
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 08:45:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036782.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036782hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hcia4 a.7.1.1 (A:633-746) al 69.3 4 0.00029 26.7 5.0 51 60-110 14-64 (114)
2 d1uklc_ a.38.1.1 (C:) SREBP-2 54.6 8.8 0.00064 23.4 4.3 26 82-107 32-57 (61)
3 d1nkpa_ a.38.1.1 (A:) Myc prot 42.6 36 0.0026 21.5 6.3 28 82-109 51-78 (88)
4 d1am9a_ a.38.1.1 (A:) SREBP-1a 36.2 29 0.0021 21.8 4.7 29 81-109 48-76 (80)
5 d1zmec1 g.38.1.1 (C:31-66) PUT 26.9 15 0.0011 20.5 1.7 15 5-19 2-16 (36)
6 d1nkpb_ a.38.1.1 (B:) Max prot 26.0 49 0.0036 20.6 4.5 30 81-110 45-74 (83)
7 d3coqa1 g.38.1.1 (A:8-48) Gal4 24.7 17 0.0012 20.4 1.6 15 5-19 2-16 (41)
8 d1pyia1 g.38.1.1 (A:30-71) PPR 24.6 19 0.0014 20.4 1.9 17 4-20 2-18 (42)
9 d2otaa1 a.284.1.1 (A:7-68) Hyp 23.2 24 0.0017 22.5 2.3 20 47-66 35-54 (62)
10 d1nlwa_ a.38.1.1 (A:) Mad prot 22.5 70 0.0051 19.6 4.7 29 82-110 46-74 (79)
11 d1clda_ g.38.1.1 (A:) CD2-Lac9 20.1 21 0.0016 19.2 1.4 16 5-20 1-16 (33)
12 d1urfa_ a.2.6.1 (A:) Protein k 20.0 1.1E+02 0.0078 19.7 5.6 47 42-104 25-71 (81)
No 1
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.34 E-value=4 Score=26.72 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 60 ADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 60 ~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
.+-+.+=+-|+..-+.+|+||-.+.|..+..+...++.+|..-+..+..+.
T Consensus 14 a~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~ 64 (114)
T d1hcia4 14 ANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLE 64 (114)
T ss_dssp HHHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888999999999999999999999999999988887664
No 2
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.63 E-value=8.8 Score=23.43 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 82 VGAISFLQNQVSQLQMQLAVAEAEIL 107 (166)
Q Consensus 82 vG~I~~Lq~qi~~lq~eL~~~q~el~ 107 (166)
+-.|..||+++..|++|+...+.+..
T Consensus 32 i~YI~~Lq~~~~~L~~e~~~L~~~~~ 57 (61)
T d1uklc_ 32 IDYIKYLQQVNHKLRQENMVLKLANQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999998887776653
No 3
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.64 E-value=36 Score=21.50 Aligned_cols=28 Identities=11% Similarity=-0.014 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 82 VGAISFLQNQVSQLQMQLAVAEAEILCI 109 (166)
Q Consensus 82 vG~I~~Lq~qi~~lq~eL~~~q~el~~~ 109 (166)
+..|..|+.++..++.++...+.+...+
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~L 78 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQL 78 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888877766665443
No 4
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.24 E-value=29 Score=21.79 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036782 81 CVGAISFLQNQVSQLQMQLAVAEAEILCI 109 (166)
Q Consensus 81 cvG~I~~Lq~qi~~lq~eL~~~q~el~~~ 109 (166)
.+-.|..|+.+++.|..+....+.++...
T Consensus 48 a~~yI~~L~~~~~~L~~e~~~lk~~~~~~ 76 (80)
T d1am9a_ 48 AIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999988888777654
No 5
>d1zmec1 g.38.1.1 (C:31-66) PUT3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.90 E-value=15 Score=20.48 Aligned_cols=15 Identities=27% Similarity=0.740 Sum_probs=10.6
Q ss_pred CCChhhhhhhcCCCC
Q 036782 5 SPCASCKLLRRRCAK 19 (166)
Q Consensus 5 ~~CAACK~lRRrC~~ 19 (166)
.+|-.||..+.||..
T Consensus 2 ~aC~~Cr~rK~kCd~ 16 (36)
T d1zmec1 2 VACLSCRKRHIKCPG 16 (36)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred ccHHHHHHhCCcCCC
Confidence 467777777777753
No 6
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.02 E-value=49 Score=20.57 Aligned_cols=30 Identities=7% Similarity=0.123 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 81 CVGAISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 81 cvG~I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
.+-.|..|+.++..++.++...+.+....+
T Consensus 45 A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~ 74 (83)
T d1nkpb_ 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889998888888888777665443
No 7
>d3coqa1 g.38.1.1 (A:8-48) Gal4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.66 E-value=17 Score=20.45 Aligned_cols=15 Identities=33% Similarity=0.999 Sum_probs=11.8
Q ss_pred CCChhhhhhhcCCCC
Q 036782 5 SPCASCKLLRRRCAK 19 (166)
Q Consensus 5 ~~CAACK~lRRrC~~ 19 (166)
.+|..||..+.+|..
T Consensus 2 ~AC~~Cr~rK~KCd~ 16 (41)
T d3coqa1 2 QACDICRLKKLKCSK 16 (41)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred cchHHHHHhCcccCC
Confidence 478888888888864
No 8
>d1pyia1 g.38.1.1 (A:30-71) PPR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.58 E-value=19 Score=20.40 Aligned_cols=17 Identities=24% Similarity=0.931 Sum_probs=13.3
Q ss_pred CCCChhhhhhhcCCCCC
Q 036782 4 NSPCASCKLLRRRCAKD 20 (166)
Q Consensus 4 ~~~CAACK~lRRrC~~~ 20 (166)
..+|..||..+.+|...
T Consensus 2 r~aC~~Cr~rK~kCd~~ 18 (42)
T d1pyia1 2 RTACKRCRLKKIKCDQE 18 (42)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred cHHHHHHHHhCcCCCCc
Confidence 46788899888888753
No 9
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=23.18 E-value=24 Score=22.49 Aligned_cols=20 Identities=20% Similarity=0.546 Sum_probs=15.8
Q ss_pred HHHHHhcCCCcchhHHHHHH
Q 036782 47 VSKMLQELPVHQRADAVSSL 66 (166)
Q Consensus 47 v~kmL~~lp~~~R~~a~~SL 66 (166)
|+++|..+|+.+|...+++-
T Consensus 35 vTnii~~V~~~qR~~iAe~F 54 (62)
T d2otaa1 35 VTNIIAQVPESKRVAVVDNF 54 (62)
T ss_dssp HHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 55677889999998877654
No 10
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.54 E-value=70 Score=19.59 Aligned_cols=29 Identities=14% Similarity=0.031 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036782 82 VGAISFLQNQVSQLQMQLAVAEAEILCIQ 110 (166)
Q Consensus 82 vG~I~~Lq~qi~~lq~eL~~~q~el~~~~ 110 (166)
+-.|..|+.++..+..++...+.+...++
T Consensus 46 ~~yI~~L~~~~~~l~~~~~~L~~~~~~L~ 74 (79)
T d1nlwa_ 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999998888888777765543
No 11
>d1clda_ g.38.1.1 (A:) CD2-Lac9 {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=20.11 E-value=21 Score=19.24 Aligned_cols=16 Identities=25% Similarity=0.883 Sum_probs=13.0
Q ss_pred CCChhhhhhhcCCCCC
Q 036782 5 SPCASCKLLRRRCAKD 20 (166)
Q Consensus 5 ~~CAACK~lRRrC~~~ 20 (166)
.+|..|+..+.+|...
T Consensus 1 rAC~~Cr~rK~kCd~~ 16 (33)
T d1clda_ 1 QACDACRKKKWKCSKT 16 (33)
T ss_dssp CCCHHHHHSCCCCCCC
T ss_pred CChHHHHHhcCccCcc
Confidence 3789999999999753
No 12
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.01 E-value=1.1e+02 Score=19.70 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=27.7
Q ss_pred hchhhHHHHHhcCCCcchhHHHHHHHHHhhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 036782 42 FGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEA 104 (166)
Q Consensus 42 FG~snv~kmL~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~ 104 (166)
=|+.||+++++.-...+|... -||+.+ +..-.+.|+.|+.+|..++.
T Consensus 25 eGaEnm~k~~~~~~~~DrK~l-----~eaq~~-----------l~eS~~Ki~lLr~~L~~~~q 71 (81)
T d1urfa_ 25 QGAENMIQTYSNGSTKDRKLL-----LTAQQM-----------LQDSKTKIDIIRMQLRRALQ 71 (81)
T ss_dssp HHHHHHHHHHHHSSSCCHHHH-----HHHHHH-----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCcccHHHH-----HHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 499999999998765555322 244322 23334556666666655443
Done!