BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036785
(523 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 2.5.
pdb|1KSC|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 5.6.
pdb|1KSD|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 6.5
Length = 433
Score = 351 bits (901), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 196/469 (41%), Positives = 265/469 (56%), Gaps = 41/469 (8%)
Query: 42 SFNYGDALSKSLLYFESQRSGRLPHNQRVTWRHHSGLTDGLEQGVDLVGGYYDAGDNVKF 101
+++Y L SLL++E+QRSGRLP +Q+VTWR S L D +QG DL GGY+DAGD VKF
Sbjct: 2 AYDYKQVLRDSLLFYEAQRSGRLPADQKVTWRKDSALNDQGDQGQDLTGGYFDAGDFVKF 61
Query: 102 GLPMAFTITMLSWGVIQYGGEISDAGEYHHAIEAIKWGTDYFIKAHTHPHVLWVEVGDGD 161
G PMA+T T+L+WG+I + S AG +A+KW TDYFIKAHT + + +VG GD
Sbjct: 62 GFPMAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIKAHTSQNEFYGQVGQGD 121
Query: 162 TDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHA 221
DH W RPEDMT +R AYK+D PGSD+AGET SIVFR ++ YS+ LL HA
Sbjct: 122 ADHAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHA 181
Query: 222 QQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYVLDNAD 281
+QLF+F + YRGKY SI + +Y S Y DEL+WAA WLY+AT++ YL D
Sbjct: 182 RQLFDFANNYRGKYSDSITDARNFYASAD-YRDELVWAAAWLYRATNDNTYLNTAESLYD 240
Query: 282 RFGGITWAITEFSWDVKYAGVQIIASMVNNHKEHEQVLERYGSKAEFYLCACLNKNNETN 341
FG W +WD K +GVQ++ + + N + ++ ++ Y + YL N
Sbjct: 241 EFGLQNWG-GGLNWDSKVSGVQVLLAKLTNKQAYKDTVQSYVN----YLI--------NN 287
Query: 342 VDRTPGGLLYIRQWDNMQYVSTAAFLLTVYGDYLQSTNQTLKCDRGTLTPRELFDFAKSQ 401
+TP GLLYI W +++ + AAF++ L+ L+ FA++Q
Sbjct: 288 QQKTPKGLLYIDMWGTLRHAANAAFIM-------------LEAAELGLSASSYRQFAQTQ 334
Query: 402 VDYILGSNPMAVSYLVGYGSKFPQRMHHRGGSTVSYKQDQGFIGCTQGYDDW--FKRLDP 459
+DY LG S++ G+GS P R HHR S C DW F DP
Sbjct: 335 IDYALGDG--GRSFVCGFGSNPPTRPHHRSSSCPPAP-----ATC-----DWNTFNSPDP 382
Query: 460 NPNVVVGALVGGPDEKDQFRDERSNFVQTEACTYNTATLVGVFAKLRRL 508
N +V+ GALVGGPD+ D + D+RS++V E T A A L L
Sbjct: 383 NYHVLSGALVGGPDQNDNYVDDRSDYVHNEVATDYNAGFQSALAALVAL 431
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 314 bits (804), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 186/493 (37%), Positives = 267/493 (54%), Gaps = 47/493 (9%)
Query: 27 YMMALTLPLIVQCHDSFNYGDALSKSLLYFESQRSGRLPHNQ-RVTWRHHSGLTDGLEQG 85
Y+ +P +FNYG+AL K++ ++E QRSG+L + R+ WR SGL DG + G
Sbjct: 8 YLPEEEIPDQPPATGAFNYGEALQKAIFFYECQRSGKLDSSTLRLNWRGDSGLDDGKDAG 67
Query: 86 VDLVGGYYDAGDNVKFGLPMAFTITMLSWGVIQYGGEISDAGEYHHAIEAIKWGTDYFIK 145
+DL GG+YDAGD+VKF LPM+++ ML W V +Y +G+Y+H + IKW DYFIK
Sbjct: 68 IDLTGGWYDAGDHVKFNLPMSYSAAMLGWAVYEYEDAFKQSGQYNHILNNIKWACDYFIK 127
Query: 146 AHTHPHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIV 205
H V + +VGDG DH W E M R +YKVD +PGS V ET SI+
Sbjct: 128 CHPEKDVYYYQVGDGHADHAWWGPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASII 187
Query: 206 FRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYK 265
F+K++ YS L HA++LFEF D K D G+Y S SG+ DEL WAAVWLY
Sbjct: 188 FKKVDGEYSKECLKHAKELFEFADT--TKSDDGYTAANGFYNSWSGFYDELSWAAVWLYL 245
Query: 266 ATDNEAYLKYVLDNADRFG-GITWAITEFSW-----DVKYAGVQIIASMVNNHKEHEQVL 319
AT++ +YL +D++G I ++ W DV Y ++A + N++ ++++ +
Sbjct: 246 ATNDSSYLDKAESYSDKWGYEPQTNIPKYKWAQCWDDVTYGTYLLLARIKNDNGKYKEAI 305
Query: 320 ERYGSKAEFYLCACLNKNNETNVDRTPGGLLYIRQWDNMQYVSTAAFLLTVYGDYLQSTN 379
ER +L N + TP GL ++ QW +++Y +T AFL VY D+
Sbjct: 306 ER-------HLDWWTTGYNGERITYTPKGLAWLDQWGSLRYATTTAFLACVYSDWENGDK 358
Query: 380 QTLKCDRGTLTPRELFDFAKSQVDYILGSNPMAVSYLVGYGSKFPQRMHHRGGSTVSYKQ 439
+ K +FA+SQ DY LGS S++VG+G P+R HHR S+
Sbjct: 359 EKAKT---------YLEFARSQADYALGS--TGRSFVVGFGENPPKRPHHRTAHG-SWAD 406
Query: 440 DQGFIGCTQGYDDWFKRLDP--NPNVVVGALVGGPDEKDQFRDERSNFVQTE-ACTYNTA 496
Q ++P + +V+ GALVGGPD D + D+ SN+ E AC YN A
Sbjct: 407 SQ---------------MEPPEHRHVLYGALVGGPDSTDNYTDDISNYTCNEVACDYN-A 450
Query: 497 TLVGVFAKLRRLY 509
VG+ AK+ +LY
Sbjct: 451 GFVGLLAKMYKLY 463
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
Length = 605
Score = 295 bits (755), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 180/477 (37%), Positives = 247/477 (51%), Gaps = 44/477 (9%)
Query: 42 SFNYGDALSKSLLYFESQRSGRLPHNQRVTWRHHSGLTDGLEQGVDLVGGYYDAGDNVKF 101
+FNY +AL KS+ ++E+QRSG+LP N RV+WR SGL DG + G+DL GG+YDAGD+VKF
Sbjct: 3 AFNYAEALQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDGADVGLDLTGGWYDAGDHVKF 62
Query: 102 GLPMAFTITMLSWGVIQYGGEISDAGEYHHAIEAIKWGTDYFIKAHTHPHVLWVEVGDGD 161
G PMAFT TML+WG I+ +G+ + + ++W DYFIKAH P+VL+V+VGDGD
Sbjct: 63 GFPMAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKAHPSPNVLYVQVGDGD 122
Query: 162 TDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHA 221
DH W E M R ++KVD PGSDVA ET SIVF +P Y+ L+ HA
Sbjct: 123 ADHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHA 182
Query: 222 QQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYL---KYVLD 278
+QL+ F D YRG Y + +Y S SGY DEL+W A WLYKAT +++YL +Y D
Sbjct: 183 KQLYTFADTYRGVYSDCVP-AGAFYNSWSGYQDELVWGAYWLYKATGDDSYLAKAEYEYD 241
Query: 279 -----NADRFGGITWAITEFSWDVKYAGVQIIASMVNNHKEHEQVLERYGSKAEFYLCAC 333
W I +WD K G ++ + E ++Y A +L
Sbjct: 242 FLSTEQQTDLRSYRWTI---AWDDKSYGTYVLLA-------KETGKQKYIDDANRWLDYW 291
Query: 334 LNKNNETNVDRTPGGLLYIRQWDNMQYVSTAAFLLTVYGDYLQSTNQTLKCDRGTLTPRE 393
N V +PGG+ + W ++Y + AF+ VY + + +
Sbjct: 292 TVGVNGQRVPYSPGGMAVLDTWGALRYAANTAFVALVYAKVIDD----------PVRKQR 341
Query: 394 LFDFAKSQVDYILGSNPMAVSYLVGYGSKFPQRMHHRGGSTVSYKQDQGFIGCTQGYDDW 453
DFA Q++Y LG NP SY+VG+G+ P+ HHR + D
Sbjct: 342 YHDFAVRQINYALGDNPRNSSYVVGFGNNPPRNPHHR--------------TAHGSWTDS 387
Query: 454 FKRLDPNPNVVVGALVGGP-DEKDQFRDERSNFVQTEACTYNTATLVGVFAKLRRLY 509
N +V+ GALVGGP D + D+R ++V E T A A L Y
Sbjct: 388 IASPAENRHVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYNAGFSSALAMLVEEY 444
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module
pdb|4DOE|A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module
Length = 475
Score = 285 bits (728), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 173/475 (36%), Positives = 256/475 (53%), Gaps = 43/475 (9%)
Query: 42 SFNYGDALSKSLLYFESQRSGRLPHNQRVTWRHHSGLTDGLEQGVDLVGGYYDAGDNVKF 101
SFNYG+AL K+++++E Q SG+LP+ R WR S L DG + G+DL GG++DAGD+VKF
Sbjct: 25 SFNYGEALQKAIMFYEFQMSGKLPNWVRNNWRGDSALKDGQDNGLDLTGGWFDAGDHVKF 84
Query: 102 GLPMAFTITMLSWGVIQYGGEISDAGEYHHAIEAIKWGTDYFIKAHTHPHVLWVEVGDGD 161
LPM++T TMLSW V +Y +G+ H + I+W DYF+K H +V + +VGDG
Sbjct: 85 NLPMSYTGTMLSWAVYEYKDAFVKSGQLEHILNQIEWVNDYFVKCHPSKYVYYYQVGDGS 144
Query: 162 TDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHA 221
DH W E M R ++KV + +PGS V ET SIV + NP + L HA
Sbjct: 145 KDHAWWGPAEVMQMERPSFKVTQSSPGSTVVAETAASLAAASIVLKDRNPTKAATYLQHA 204
Query: 222 QQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYVLDNAD 281
++L+EF + K D+ GYY S SG+ DEL WAAVWLY AT++ YL
Sbjct: 205 KELYEFAE--VTKSDAGYTAANGYYNSWSGFYDELSWAAVWLYLATNDSTYLTKAESYVQ 262
Query: 282 RFGGITWAIT-----EFSWDVKYAGVQIIASMVNNHKEHEQVLERYGSKAEFYLCACLNK 336
+ I+ + T WD + G ++ + + ++Q++E S +++
Sbjct: 263 NWPKISGSNTIDYKWAHCWDDVHNGAALLLAKITGKDIYKQIIE---SHLDYWTTGY--- 316
Query: 337 NNETNVDRTPGGLLYIRQWDNMQYVSTAAFLLTVYGDYLQSTNQTLKCDRGTLTPRELF- 395
N + TP GL ++ QW +++Y +T AFL VY D++ + T +E++
Sbjct: 317 -NGERIKYTPKGLAWLDQWGSLRYATTTAFLAFVYSDWVGCPS----------TKKEIYR 365
Query: 396 DFAKSQVDYILGSNPMAVSYLVGYGSKFPQRMHHRGGSTVSYKQDQGFIGCTQGYDDWFK 455
F +SQ+DY LGS S++VG+G+ P+R HHR + S+ Q +
Sbjct: 366 KFGESQIDYALGS--AGRSFVVGFGTNPPKRPHHRTAHS-SWADSQSIPSYHR------- 415
Query: 456 RLDPNPNVVVGALVGGPDEKDQFRDERSNFVQTE-ACTYNTATLVGVFAKLRRLY 509
+ + GALVGGP D + D+ SN+V E AC YN A VG AK+ +LY
Sbjct: 416 ------HTLYGALVGGPGSDDSYTDDISNYVNNEVACDYN-AGFVGALAKMYQLY 463
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 261 bits (668), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 171/476 (35%), Positives = 243/476 (51%), Gaps = 50/476 (10%)
Query: 42 SFNYGDALSKSLLYFESQRSGRLPHNQRVTWRHHSGLTDGLEQGVDLVGGYYDAGDNVKF 101
++NYG+AL KS++++E QRSG LP ++R WR SG+ DG + GVDL GG+YDAGD+VKF
Sbjct: 3 TYNYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKF 62
Query: 102 GLPMAFTITMLSWGVIQYGGEISDAGEYHHAIEAIKWGTDYFIKAHTHPHVLWVEVGDGD 161
LPM++T ML+W + + +G+ + ++ IKW DYFIK + P V + +VGDG
Sbjct: 63 NLPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGDGG 122
Query: 162 TDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHA 221
DH W E M R ++KVD PGS V T ++VF+ +P Y+ + HA
Sbjct: 123 KDHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHA 182
Query: 222 QQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYVLDNAD 281
+ LF+ DK K D+ GYY S S + D+L WAAVWLY AT++ YL
Sbjct: 183 KNLFDMADK--AKSDAGYTAASGYY-SSSSFYDDLSWAAVWLYLATNDSTYLDKAESYVP 239
Query: 282 RFGGITWA-ITEFSW-----DVKYAGVQIIASMVNNHKEHEQVLERYGSKAEFYLCACLN 335
+G I + W DV Y ++A + N + Y E L
Sbjct: 240 NWGKEQQTDIIAYKWGQXWDDVHYGAELLLAKLTNK--------QLYKDSIEMNLDFWTT 291
Query: 336 KNNETNVDRTPGGLLYIRQWDNMQYVSTAAFLLTVYGDYLQSTNQTLKCDRGTLTPRELF 395
N T V TP GL ++ QW ++++ +T AFL VY ++ T + +
Sbjct: 292 GVNGTRVSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWEGCTPSKVSVYK--------- 342
Query: 396 DFAKSQVDYILGSNPMAVSYLVGYGSKFPQRMHHRGGSTVSYKQDQGFIGCTQGYDDWFK 455
DF KSQ+DY LGS S++VGYG PQ HHR + W
Sbjct: 343 DFLKSQIDYALGS--TGRSFVVGYGVNPPQHPHHR-----------------TAHGSWTD 383
Query: 456 RLDP---NPNVVVGALVGGPDEKDQFRDERSNFVQTE-ACTYNTATLVGVFAKLRR 507
++ + + + GALVGGPD D + DE +N+V E AC YN A G AK+ +
Sbjct: 384 QMTSPTYHRHTIYGALVGGPDNADGYTDEINNYVNNEIACDYN-AGFTGALAKMYK 438
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 261 bits (667), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 171/476 (35%), Positives = 243/476 (51%), Gaps = 50/476 (10%)
Query: 42 SFNYGDALSKSLLYFESQRSGRLPHNQRVTWRHHSGLTDGLEQGVDLVGGYYDAGDNVKF 101
++NYG+AL KS++++E QRSG LP ++R WR SG+ DG + GVDL GG+YDAGD+VKF
Sbjct: 3 TYNYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKF 62
Query: 102 GLPMAFTITMLSWGVIQYGGEISDAGEYHHAIEAIKWGTDYFIKAHTHPHVLWVEVGDGD 161
LPM++T ML+W + + +G+ + ++ IKW DYFIK + P V + +VGDG
Sbjct: 63 NLPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGDGG 122
Query: 162 TDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHA 221
DH W E M R ++KVD PGS V T ++VF+ +P Y+ + HA
Sbjct: 123 KDHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHA 182
Query: 222 QQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYVLDNAD 281
+ LF+ DK K D+ GYY S S + D+L WAAVWLY AT++ YL
Sbjct: 183 KNLFDMADK--AKSDAGYTAASGYY-SSSSFYDDLSWAAVWLYLATNDSTYLDKAESYVP 239
Query: 282 RFGGITWA-ITEFSW-----DVKYAGVQIIASMVNNHKEHEQVLERYGSKAEFYLCACLN 335
+G I + W DV Y ++A + N + Y E L
Sbjct: 240 NWGKEQQTDIIAYKWGQCWDDVHYGAELLLAKLTNK--------QLYKDSIEMNLDFWTT 291
Query: 336 KNNETNVDRTPGGLLYIRQWDNMQYVSTAAFLLTVYGDYLQSTNQTLKCDRGTLTPRELF 395
N T V TP GL ++ QW ++++ +T AFL VY ++ T + +
Sbjct: 292 GVNGTRVSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWEGCTPSKVSVYK--------- 342
Query: 396 DFAKSQVDYILGSNPMAVSYLVGYGSKFPQRMHHRGGSTVSYKQDQGFIGCTQGYDDWFK 455
DF KSQ+DY LGS S++VGYG PQ HHR + W
Sbjct: 343 DFLKSQIDYALGS--TGRSFVVGYGVNPPQHPHHR-----------------TAHGSWTD 383
Query: 456 RLDP---NPNVVVGALVGGPDEKDQFRDERSNFVQTE-ACTYNTATLVGVFAKLRR 507
++ + + + GALVGGPD D + DE +N+V E AC YN A G AK+ +
Sbjct: 384 QMTSPTYHRHTIYGALVGGPDNADGYTDEINNYVNNEIACDYN-AGFTGALAKMYK 438
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 226 bits (575), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 140/477 (29%), Positives = 231/477 (48%), Gaps = 62/477 (12%)
Query: 44 NYGDALSKSLLYFESQRSG-RLPHNQRVTWRHHSGLTDGLEQGVDLVGGYYDAGDNVKFG 102
+Y AL S+++F++ + G + N WR TDG + GVDL GGY+DAGD+VKFG
Sbjct: 5 DYSTALKDSIIFFDANKCGPQAGENNVFDWRGACHTTDGSDVGVDLTGGYHDAGDHVKFG 64
Query: 103 LPMAFTITMLSWGVIQYGGEISDAGEYHHAIEAIKWGTDYFIKAHTHPHVLWVEVGDGDT 162
LP ++ +L W + ++ G ++ +K+ TDYF+K+H + + +VG+G+
Sbjct: 65 LPQGYSAAILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLKSHPNSTTFYYQVGEGNA 124
Query: 163 DHYCWQRPEDMTTSRRA-YKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHA 221
DH W PE+ T R + YK D +P SD+ ET + ++ ++ Y+ L+ A
Sbjct: 125 DHTYWGAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYATKCLNAA 184
Query: 222 QQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYVLDNAD 281
++L+ G +G + + +Y + S + D+L WAA WLY AT++ Y+ +A+
Sbjct: 185 KELYAMGKANQG-----VGNGQSFYQATS-FGDDLAWAATWLYTATNDSTYIT----DAE 234
Query: 282 RFGGITWAITE--------FSWDVKYAGVQIIASMVNNHKEHEQVLERYGSKAEFYLCAC 333
+F + + E WD Y + + + + ++ +E
Sbjct: 235 QFITLGNTMNENKMQDKWTMCWDDMYVPAALRLAQITGKQIYKDAIE------------- 281
Query: 334 LNKNN-ETNVDRTPGGLLYIRQWDNMQYVSTAAFLLTVYGDYLQSTNQTLKCDRGTLTPR 392
N N +T V TPGGL ++ W ++Y + + ++ VY C + +
Sbjct: 282 FNFNYWKTQVTTTPGGLKWLSNWGVLRYAAAESMVMLVY------------CKQN--PDQ 327
Query: 393 ELFDFAKSQVDYILGSNPMAVSYLVGYGSKFPQRMHHRGGSTVSYKQDQGFIGCTQGYDD 452
L D AK QVDYILG NP +SY++GYGS + HHR + +Y
Sbjct: 328 SLLDLAKKQVDYILGDNPANMSYIIGYGSNWCIHPHHRAANGYTYANGD----------- 376
Query: 453 WFKRLDPNPNVVVGALVGGPDEKDQFRDERSNFVQTEACTYNTATLVGVFAKLRRLY 509
P +++ GALVGGPD+ D+F D+ + + TE A LVGV A + +
Sbjct: 377 ---NAKPAKHLLTGALVGGPDQNDKFLDDANQYQYTEVALDYNAGLVGVLAGAIKFF 430
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 143/511 (27%), Positives = 234/511 (45%), Gaps = 76/511 (14%)
Query: 43 FNYGDALSKSLLYFESQRSGR-LPHNQRVTWR--------------HHSGLTDGL----- 82
+NY AL S+ ++++ G + N ++WR ++ ++DG
Sbjct: 38 YNYAKALQYSMFFYDANMCGTGVDENSLLSWRGDCHVYDARLPLDSQNTNMSDGFISSNR 97
Query: 83 -------EQGVDLVGGYYDAGDNVKFGLPMAFTITMLSWGVIQYGGEISDAGEYHHAIEA 135
+ VD+ GG++DAGD+VKFGLP A+ + + WG ++ + G+ HA
Sbjct: 98 SVLDPDGDGKVDVSGGFHDAGDHVKFGLPEAYAASTVGWGYYEFKDQFRATGQAVHAEVI 157
Query: 136 IKWGTDYFIK-----AHTHPHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSD 190
+++ DYF++ A + +VGDGD DH W PE+ T RR + + + PG+D
Sbjct: 158 LRYFNDYFMRCTFRDASGNVVAFCHQVGDGDIDHAFWGAPENDTMFRRGWFITKEKPGTD 217
Query: 191 VAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVS 250
+ T + F+ +P Y+ L +A+ LF+F +K + KGYY S S
Sbjct: 218 IISATAASLAINYMNFKDTDPQYAAKSLDYAKALFDFAEKNPKGVVQGEDGPKGYYGS-S 276
Query: 251 GYMDELLWAAVWLYKATDNEAYLKYVLDNADRFGGITWAITEFSWDVKYAGVQIIASMVN 310
+ D+ WAA WLY AT NE YL D + W W+ ++G I + +N
Sbjct: 277 KWQDDYCWAAAWLYLATQNEHYLDEAFKYYDYYAPPGWI---HCWNDVWSGTACILAEIN 333
Query: 311 N--HKEHEQVLERYGSKA--------EFY--LCACLNKNNETNVDRTPGGLLYIRQWDNM 358
+ K+ + +RY + +F+ + L+K + + TPGG +++ QW +
Sbjct: 334 DLYDKDSQNFEDRYKRASNKNQWEQIDFWKPIQDLLDKWSGGGITVTPGGYVFLNQWGSA 393
Query: 359 QYVSTAAFLLTVYGDYLQSTNQTLKCDRGTLTPRELFDFAKSQVDYILGSNPMAVSYLVG 418
+Y + A + VY + TP + ++A+SQ+DY+LG NP+ Y+VG
Sbjct: 394 RYNTAAQLIALVYDKHHGD------------TPSKYANWARSQMDYLLGKNPLNRCYVVG 441
Query: 419 YGSKFPQRMHHRGGSTVSYKQDQGFIGCTQGYDDWFKRLDPNPNVVVGALVGGPDEKDQF 478
Y S + HHR S + D P+ V+ GALVGGPD DQ
Sbjct: 442 YSSNSVKYPHHRAASGLKDANDSS----------------PHKYVLYGALVGGPDASDQH 485
Query: 479 RDERSNFVQTEACTYNTATLVGVFAKLRRLY 509
D ++++ E A VG A L R +
Sbjct: 486 VDRTNDYIYNEVAIDYNAAFVGACAGLYRFF 516
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 109/498 (21%), Positives = 181/498 (36%), Gaps = 91/498 (18%)
Query: 45 YGDALSKSLLYFESQRSGR-LPHNQRVTWRHHSGLTD-----GLEQGVDLVGGYYDAGDN 98
Y D L L +F+ Q G LP ++ W H + T G E+ + GG++DAGD
Sbjct: 88 YRDVLEAMLRFFDYQLCGVVLPEDEAGPWAHGACHTSDAKVFGTERALACPGGWHDAGDY 147
Query: 99 VKFGLPMAFTITMLSWGVIQYGGEISDAGEYHHAIEAIKWGTDYFIKAHTHPHV-LWVEV 157
K+ +P A + ++ A EY A A H PH+ +EV
Sbjct: 148 GKYTVPAAKAV-----------ADLLLAHEYFPAALA---HVRPMRSVHRAPHLPPALEV 193
Query: 158 GDGDTDHYCW----QRPED-----MTTSRRAYKVDER----------NPGSDVAGET-XX 197
+ W Q P T+ +D R +P S A T
Sbjct: 194 A---REEIAWLLTMQDPATGGVYHKVTTPSFPPLDTRPEDDDAPLVLSPISYAATATFCA 250
Query: 198 XXXXXSIVFRKLNPHYSHLLLHHAQQLFE-FGDKYRGKYDSSIEVVKGYYPSVSGYMDEL 256
++V+R +P S A++ + G + + ++ G Y + DEL
Sbjct: 251 AMAHAALVYRPFDPALSSCCADAARRAYAWLGAHEMQPFHNPDGILTGEY-GDAELRDEL 309
Query: 257 LWAAVWLYKATDNEAYLKYVLDNADRFGGITWAITEFSWDVKYAGVQIIASMVNNHKEHE 316
LWA+ L + T + A+ + D + W++ +A V + M
Sbjct: 310 LWASCALLRMTGDSAWARVCEPLLD---------LDLPWELGWADVALYGVMDYLRTPRA 360
Query: 317 QVLERYGSKAEFYLCACLNKNNETNVDRTPGGLLYIRQWD-----NMQYVSTA-AFLLTV 370
V + +K + L L+ + P G + +R D NM ++ A AFLL
Sbjct: 361 AVSDDVRNKVKSRLLRELDA-LAAMAESHPFG-IPMRDDDFIWGSNMVLLNRAMAFLLAE 418
Query: 371 YGDYLQSTNQTLKCDRGTLTPRELFDFAKSQVDYILGSNPMAVSYLVGYGSKFPQRMHHR 430
L T+ A+ DY+ G+NP+ Y+ G+G + + HHR
Sbjct: 419 GVGVLHPAAHTV---------------AQRAADYLFGANPLGQCYVTGFGQRPVRHPHHR 463
Query: 431 GGSTVSYKQDQGFIGCTQGYDDWFKRLDPNPNV---VVGALVGGPDEKDQFRDERSNFVQ 487
+V+ D G G PN ++ + A + G + + D + ++
Sbjct: 464 --PSVADDVDHPVPGMVVG--------GPNRHLQDEIARAQLAGRPAMEAYIDHQDSYST 513
Query: 488 TEACTYNTATLVGVFAKL 505
E Y + V V A L
Sbjct: 514 NEVAVYWNSPAVFVIAAL 531
>pdb|1CLC|A Chain A, Three-Dimensional Structure Of Endoglucanase D At 1.9
Angstroms Resolution
Length = 639
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 205 VFRKLNPHYSHLLLHHAQQLFEF-GDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWL 263
+FR +P Y+ ++ A+ +EF + + + G Y +VS D+ LWAA +
Sbjct: 302 IFRPYDPQYAEKCINAAKVSYEFLKNNPANVFANQSGFSTGEYATVSD-ADDRLWAAAEM 360
Query: 264 YKATDNEAYLKYVLDNADRFGGITWAITEFSWD 296
++ +E YL+ + A +F A +F WD
Sbjct: 361 WETLGDEEYLRDFENRAAQFSKKIEA--DFDWD 391
>pdb|3RNQ|A Chain A, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Pd-L2
Length = 117
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 293 FSWDVKYAGVQIIASMVNNHKEHEQVLERYGSKAEFYLCACLNKNNETNVDRTPGGLLYI 352
S V+ A QII + N H H +L+ + + YLC ++++ + ++ +PG L +
Sbjct: 53 LSQPVQDARFQII-QLPNRHDFHMNILDTRRNDSGIYLCGAISRHPKAKIEESPGAELVV 111
Query: 353 RQ 354
+
Sbjct: 112 TE 113
>pdb|1UT9|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 609
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 402 VDYILGSNPMAVSYLVGYGSKFPQRMHHR 430
+ Y+LG N M SY+ GYG + Q H R
Sbjct: 504 ISYLLGRNAMDQSYVTGYGERPLQNPHDR 532
>pdb|1RQ5|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 610
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 402 VDYILGSNPMAVSYLVGYGSKFPQRMHHR 430
+ Y+LG N M SY+ GYG + Q H R
Sbjct: 504 ISYLLGRNAMDQSYVTGYGERPLQNPHDR 532
>pdb|1NPU|A Chain A, Crystal Structure Of The Extracellular Domain Of Murine
Pd-1
pdb|3BP5|A Chain A, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
Length = 117
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 293 FSWDVKYAGVQIIASMVNNHKEHEQVLERYGSKAEFYLCACLNKNNETNVDRTPGGLLYI 352
S V+ A QII + N H H +L+ + + YLC ++ + + ++ +PG L +
Sbjct: 53 LSQPVQDARFQII-QLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVV 111
Query: 353 RQ 354
+
Sbjct: 112 TE 113
>pdb|3BIK|B Chain B, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIK|C Chain C, Crystal Structure Of The Pd-1PD-L1 Complex
Length = 134
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 293 FSWDVKYAGVQIIASMVNNHKEHEQVLERYGSKAEFYLCACLNKNNETNVDRTPGGLLYI 352
S V+ A QII + N H H +L+ + + YLC ++ + + ++ +PG L +
Sbjct: 63 LSQPVQDARFQII-QLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVV 121
Query: 353 RQ 354
+
Sbjct: 122 TE 123
>pdb|3BP6|A Chain A, Crystal Structure Of The Mouse Pd-1 Mutant And Pd-L2
Complex
pdb|3RNK|A Chain A, Crystal Structure Of The Complex Between Mouse Pd-1 Mutant
And Pd-L2 Igv Domain
pdb|3SBW|A Chain A, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
pdb|3SBW|B Chain B, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 117
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 293 FSWDVKYAGVQIIASMVNNHKEHEQVLERYGSKAEFYLCACLNKNNETNVDRTPGGLLYI 352
S V+ A QII + N H H +L+ + + YLC ++ + + ++ +PG L +
Sbjct: 53 LSQPVQDARFQII-QLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKLKIEESPGAELVV 111
Query: 353 RQ 354
+
Sbjct: 112 TE 113
>pdb|3T41|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
pdb|3T41|B Chain B, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
Length = 471
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 290 ITEFSWDVKYAGVQIIASMVNNHKEHEQVLERYGSKAEFYLCACLN-KNNETNVDRTPGG 348
+ + S +V Y ++ + + K H L Y + ++ C +E +DRT
Sbjct: 61 VKKKSLNVVYNIPELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNE 120
Query: 349 LLYIRQWDNMQYVSTAA 365
L+ RQWD + + A
Sbjct: 121 SLFSRQWDMNKITNNGA 137
>pdb|3QFH|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|B Chain B, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|C Chain C, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|D Chain D, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|E Chain E, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|F Chain F, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|G Chain G, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|H Chain H, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus
Length = 447
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 290 ITEFSWDVKYAGVQIIASMVNNHKEHEQVLERYGSKAEFYLCACLN-KNNETNVDRTPGG 348
+ + S +V Y ++ + + K H L Y + ++ C +E +DRT
Sbjct: 37 VKKKSLNVVYNIPELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNE 96
Query: 349 LLYIRQWDNMQYVSTAA 365
L+ RQWD + + A
Sbjct: 97 SLFSRQWDMNKITNNGA 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,821,665
Number of Sequences: 62578
Number of extensions: 812214
Number of successful extensions: 1522
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1458
Number of HSP's gapped (non-prelim): 26
length of query: 523
length of database: 14,973,337
effective HSP length: 103
effective length of query: 420
effective length of database: 8,527,803
effective search space: 3581677260
effective search space used: 3581677260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)