BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036786
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZR07|FRDA_ARATH Frataxin, mitochondrial OS=Arabidopsis thaliana GN=FH PE=2 SV=2
Length = 187
Score = 143 bits (360), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/109 (65%), Positives = 85/109 (77%), Gaps = 13/109 (11%)
Query: 42 GNSLRHPSSTLITATRNFSSRPSGLDSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEK 101
G+ +RH S T TR+FSS Q P ++DY S+LQE+EFH+LAN TI+ L EK
Sbjct: 49 GSRIRHDSLT----TRSFSS---------QGPASVDYSSVLQEEEFHKLANFTINHLLEK 95
Query: 102 FEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIWLSSPV 150
E+YGD +QIDGFD+DYGNEVLTLKLG+LGTYVLNKQTPNRQIW+SSPV
Sbjct: 96 IEDYGDNVQIDGFDIDYGNEVLTLKLGSLGTYVLNKQTPNRQIWMSSPV 144
>sp|O35943|FRDA_MOUSE Frataxin, mitochondrial OS=Mus musculus GN=Fxn PE=1 SV=1
Length = 207
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 52/76 (68%), Gaps = 2/76 (2%)
Query: 76 IDYRSLLQEDEFHRLANSTIHDLQEKFEEYGDT-IQIDGFDVDYGNEVLTLKLGA-LGTY 133
+D S L E + RLA T+ L E FE+ D ++ +DV +G+ VLT+KLG LGTY
Sbjct: 81 LDNPSSLDETAYERLAEETLDSLAEFFEDLADKPYTLEDYDVSFGDGVLTIKLGGDLGTY 140
Query: 134 VLNKQTPNRQIWLSSP 149
V+NKQTPN+QIWLSSP
Sbjct: 141 VINKQTPNKQIWLSSP 156
>sp|Q16595|FRDA_HUMAN Frataxin, mitochondrial OS=Homo sapiens GN=FXN PE=1 SV=2
Length = 210
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEYGDT-IQIDGFDVDYGNEVLTLKLGA-LGTYVLNKQT 139
L E + RLA T+ L E FE+ D + +DV +G+ VLT+KLG LGTYV+NKQT
Sbjct: 90 LDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQT 149
Query: 140 PNRQIWLSSP 149
PN+QIWLSSP
Sbjct: 150 PNKQIWLSSP 159
>sp|Q05B87|FRDA_BOVIN Frataxin, mitochondrial OS=Bos taurus GN=FXN PE=2 SV=1
Length = 217
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 55/84 (65%), Gaps = 7/84 (8%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEYGDT-IQIDGFDVDYGNEVLTLKLGA-LGTYVLNKQT 139
L + + RLA T+ L E FE+ D + +DV +G+ VLT+KLG LGTYV+NKQT
Sbjct: 91 LDDTTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQT 150
Query: 140 PNRQIWLSSPV----RY-YCGRSY 158
PN+QIWLSSP RY + GR++
Sbjct: 151 PNKQIWLSSPSSGPKRYDWTGRNW 174
>sp|Q8HXX9|FRDA_MACFA Frataxin, mitochondrial OS=Macaca fascicularis GN=FXN PE=2 SV=1
Length = 210
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEYGDT-IQIDGFDVDYGNEVLTLKLGA-LGTYVLNKQT 139
L + + RLA T+ L E FE+ D + +DV +G+ VLT+KLG LGTYV+NKQT
Sbjct: 90 LDDTTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQT 149
Query: 140 PNRQIWLSSP 149
PN+QIWLSSP
Sbjct: 150 PNKQIWLSSP 159
>sp|O74831|FRDA_SCHPO Frataxin homolog, mitochondrial OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1183.03c PE=3 SV=1
Length = 158
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 58 NFSSRPSGLDSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVD 117
FS+ GL + + + + L + E+HR+A+ T+ L + FE+ + + +D+
Sbjct: 20 EFSTNVFGLRCRYYS--QVRHNGALTDLEYHRVADDTLDVLNDTFEDLLEEVGKKDYDIQ 77
Query: 118 YGNEVLTLKLGALGTYVLNKQTPNRQIWLSSPV 150
Y N V+TL LG GTYV+NKQ P QIWLSSPV
Sbjct: 78 YANGVITLMLGEKGTYVINKQPPAHQIWLSSPV 110
>sp|Q9W385|FRDA_DROME Frataxin homolog, mitochondrial OS=Drosophila melanogaster GN=fh
PE=2 SV=1
Length = 190
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 76 IDYRSLLQEDEFHRLANSTIHDLQEKFEEYGDTI-QIDGFDVDYGNEVLTLKLGAL-GTY 133
I+ S L + R+ + T+ L + FEE + ++ G DV Y + VLT+ LG GTY
Sbjct: 62 IETESTLDGATYERVCSDTLDALCDYFEELTENASELQGTDVAYSDGVLTVNLGGQHGTY 121
Query: 134 VLNKQTPNRQIWLSSP 149
V+N+QTPN+QIWLSSP
Sbjct: 122 VINRQTPNKQIWLSSP 137
>sp|Q9TY03|FRDA_CAEEL Frataxin, mitochondrial OS=Caenorhabditis elegans GN=frh-1 PE=2
SV=1
Length = 136
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 81 LLQEDEFHRLANSTIHDLQEKFEEYGDTIQI-DGFDVDYGNEVLTLKLG-ALGTYVLNKQ 138
+ ++E+ A+ST+ L + F++ D+ + + FDV + VLT+ + ++GTYV+NKQ
Sbjct: 19 IFSQNEYETAADSTLERLSDYFDQIADSFPVSEQFDVSHAMGVLTVNVSKSVGTYVINKQ 78
Query: 139 TPNRQIWLSSPV 150
+PN+QIWLSSP+
Sbjct: 79 SPNKQIWLSSPM 90
>sp|D3ZYW7|FRDA_RAT Frataxin, mitochondrial OS=Rattus norvegicus GN=Fxn PE=1 SV=1
Length = 208
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 80 SLLQEDEFHRLANSTIHDLQEKFEEYGDT-IQIDGFDVDYGNEVLTLKLGA-LGTYVLNK 137
S L E + RLA T+ L E FE+ D + +DV +G+ VLT+KLG LGTYV+NK
Sbjct: 86 SSLDETAYERLAEETLDALAEFFEDLADKPYTLKDYDVSFGDGVLTIKLGGDLGTYVINK 145
Query: 138 QTPNRQIWLSSPV 150
QTP +W S P
Sbjct: 146 QTPLLYLWFSGPC 158
>sp|Q54C45|FRDA_DICDI Frataxin, mitochondrial OS=Dictyostelium discoideum GN=fxn PE=3
SV=1
Length = 193
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 8/63 (12%)
Query: 96 HDL-QEKFEEYGDTIQI-------DGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIWLS 147
HD+ E+FE + D ++I +GF+V+ + VLT+ +G GTYV+NKQTPNRQIW S
Sbjct: 89 HDIVDEEFELFVDRLEILSEANTCEGFEVEGNDGVLTIIVGNKGTYVINKQTPNRQIWWS 148
Query: 148 SPV 150
SP+
Sbjct: 149 SPL 151
>sp|Q07540|FRDA_YEAST Frataxin homolog, mitochondrial OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YFH1 PE=1 SV=1
Length = 174
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 85 DEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQI 144
+++H A+ + L + EE + DV+ + V+TL++ A GTYV+NKQ PN+QI
Sbjct: 71 EKYHEEADDYLDHLLDSLEELSEAHPDCIPDVELSHGVMTLEIPAFGTYVINKQPPNKQI 130
Query: 145 WLSSPV 150
WL+SP+
Sbjct: 131 WLASPL 136
>sp|Q8SWI3|FRDA_ENCCU Frataxin, mitosomal OS=Encephalitozoon cuniculi (strain GB-M1)
GN=YFH1 PE=3 SV=1
Length = 118
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 71 QAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGAL 130
Q PE + R L +H+LA+ T+ DL E+ ++ ++DG DY + L +K+ +
Sbjct: 5 QTPEDVITRQL-----YHKLADETLTDLSEQLDK-----ELDGGYADYKDGNLQIKIDNV 54
Query: 131 GTYVLNKQTPNRQIWLSSPV 150
G Y+ NKQ + QIW SSP+
Sbjct: 55 GEYMFNKQPASMQIWASSPI 74
>sp|C4K1X9|CYAY_RICPU Protein CyaY OS=Rickettsia peacockii (strain Rustic) GN=cyaY PE=3
SV=1
Length = 103
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 86 EFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIW 145
EF ++A +TI + EK EE ID VD ++L L G YV+NKQ+ ++IW
Sbjct: 5 EFSKIAETTIAYIAEKIEEQDKEASID---VDLQGDILNLDTDK-GVYVINKQSAAKEIW 60
Query: 146 LSSPVR---YYC 154
LSSPV ++C
Sbjct: 61 LSSPVSGPYHFC 72
>sp|A8GRM5|CYAY_RICRS Protein CyaY OS=Rickettsia rickettsii (strain Sheila Smith) GN=cyaY
PE=3 SV=1
Length = 103
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 86 EFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIW 145
EF ++A +TI + EK EE ID VD ++L L G YV+NKQ+ ++IW
Sbjct: 5 EFSKIAETTIAYIAEKIEEQDKEASID---VDLQGDILNLDTDK-GVYVINKQSAAKEIW 60
Query: 146 LSSPV 150
LSSPV
Sbjct: 61 LSSPV 65
>sp|B0BX32|CYAY_RICRO Protein CyaY OS=Rickettsia rickettsii (strain Iowa) GN=cyaY PE=3
SV=1
Length = 103
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 86 EFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIW 145
EF ++A +TI + EK EE ID VD ++L L G YV+NKQ+ ++IW
Sbjct: 5 EFSKIAETTIAYIAEKIEEQDKEASID---VDLQGDILNLDTDK-GVYVINKQSAAKEIW 60
Query: 146 LSSPV 150
LSSPV
Sbjct: 61 LSSPV 65
>sp|Q92IH7|CYAY_RICCN Protein CyaY OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7)
GN=cyaY PE=3 SV=1
Length = 103
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 86 EFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIW 145
EF ++A +TI + EK EE ID VD ++L L G YV+NKQ+ ++IW
Sbjct: 5 EFSKIAETTIAYIAEKIEEQDKEASID---VDLQGDILNLDTDK-GVYVINKQSAAKEIW 60
Query: 146 LSSPV 150
LSSPV
Sbjct: 61 LSSPV 65
>sp|C3PN35|CYAY_RICAE Protein CyaY OS=Rickettsia africae (strain ESF-5) GN=cyaY PE=3 SV=1
Length = 103
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 86 EFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIW 145
EF ++A +TI + EK EE ID VD ++L L G YV+NKQ+ ++IW
Sbjct: 5 EFSKIAETTIAYIAEKIEEQDKEASID---VDLQGDILNLDTDK-GVYVINKQSAAKEIW 60
Query: 146 LSSPV 150
LSSPV
Sbjct: 61 LSSPV 65
>sp|Q4UM50|CYAY_RICFE Protein CyaY OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
GN=cyaY PE=3 SV=1
Length = 101
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 86 EFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIW 145
EF ++A +TI + +K EE ID VD ++L L G YV+NKQ+ ++IW
Sbjct: 5 EFSKIAETTIAYIADKIEEQDKEASID---VDLQGDILNLDTDK-GIYVINKQSAAKEIW 60
Query: 146 LSSPV 150
LSSPV
Sbjct: 61 LSSPV 65
>sp|A8GN05|CYAY_RICAH Protein CyaY OS=Rickettsia akari (strain Hartford) GN=cyaY PE=3
SV=1
Length = 101
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 86 EFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIW 145
EF ++A+ TI + + EE ID VD ++L L G YV+NKQ+ ++IW
Sbjct: 5 EFSKIADITIAYITDTIEEQDKEASID---VDLQGDILNLDTDK-GIYVINKQSAAKEIW 60
Query: 146 LSSPVRYYCGRSY 158
LSSPV C Y
Sbjct: 61 LSSPVSGPCHFFY 73
>sp|Q1RIC4|CYAY_RICBR Protein CyaY OS=Rickettsia bellii (strain RML369-C) GN=cyaY PE=3
SV=1
Length = 96
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 86 EFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIW 145
EF ++A + I + ++ EE I DVD +++L++ G YV+NKQ+ ++IW
Sbjct: 5 EFSKIAETVIAHIADRIEEQNQDI-----DVDLQSDILSIDTTD-GIYVINKQSAAKEIW 58
Query: 146 LSSPV 150
LSSPV
Sbjct: 59 LSSPV 63
>sp|Q68X49|CYAY_RICTY Protein CyaY OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington)
GN=cyaY PE=3 SV=2
Length = 104
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 87 FHRLANSTIHDLQEKFEEYGDTIQIDGF-DVDYGNEVLTLKLGALGTYVLNKQTPNRQIW 145
F +LA +TI + +K EE I+G DVD ++L L G YV+N Q+ +++IW
Sbjct: 6 FSKLAETTIVYIVDKIEEQ----DIEGIIDVDLHGDILNLDTEN-GIYVINTQSASKEIW 60
Query: 146 LSSPV 150
LSSPV
Sbjct: 61 LSSPV 65
>sp|C3LPW5|CYAY_VIBCM Protein CyaY OS=Vibrio cholerae serotype O1 (strain M66-2) GN=cyaY
PE=3 SV=1
Length = 104
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDY---GNEVLTLKLGALGTYVLNKQ 138
+ E EFH+L +S + ++ +E G D+DY GN V+TL+ ++N+Q
Sbjct: 1 MNETEFHQLVDSQLERIEAAIDEAG-------ADIDYETSGN-VMTLEFDDGSQIIINRQ 52
Query: 139 TPNRQIWLSSPVRYY 153
P R+IWL+S Y
Sbjct: 53 EPMREIWLASKSGGY 67
>sp|Q9KVL8|CYAY_VIBCH Protein CyaY OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El
Tor Inaba N16961) GN=cyaY PE=3 SV=1
Length = 104
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDY---GNEVLTLKLGALGTYVLNKQ 138
+ E EFH+L +S + ++ +E G D+DY GN V+TL+ ++N+Q
Sbjct: 1 MNETEFHQLVDSQLERIEAAIDEAG-------ADIDYETSGN-VMTLEFDDGSQIIINRQ 52
Query: 139 TPNRQIWLSSPVRYY 153
P R+IWL+S Y
Sbjct: 53 EPMREIWLASKSGGY 67
>sp|A5F4I9|CYAY_VIBC3 Protein CyaY OS=Vibrio cholerae serotype O1 (strain ATCC 39541 /
Ogawa 395 / O395) GN=cyaY PE=3 SV=1
Length = 104
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDY---GNEVLTLKLGALGTYVLNKQ 138
+ E EFH+L +S + ++ +E G D+DY GN V+TL+ ++N+Q
Sbjct: 1 MNETEFHQLVDSQLERIEAAIDEAG-------ADIDYETSGN-VMTLEFDDGSQIIINRQ 52
Query: 139 TPNRQIWLSSPVRYY 153
P R+IWL+S Y
Sbjct: 53 EPMREIWLASKSGGY 67
>sp|Q9ZDK5|CYAY_RICPR Protein CyaY OS=Rickettsia prowazekii (strain Madrid E) GN=cyaY
PE=3 SV=1
Length = 104
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 87 FHRLANSTIHDLQEKFEEYGDTIQIDGF-DVDYGNEVLTLKLGALGTYVLNKQTPNRQIW 145
F +LA +TI + +K EE ++G DVD ++L L G YV+N Q+ +++IW
Sbjct: 6 FSKLAETTIVYIVDKIEEQ----DLEGIIDVDLQGDILNLDTEN-GIYVINTQSASKEIW 60
Query: 146 LSSPV 150
LSSPV
Sbjct: 61 LSSPV 65
>sp|B7VMD7|CYAY_VIBSL Protein CyaY OS=Vibrio splendidus (strain LGP32) GN=cyaY PE=3 SV=1
Length = 104
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDY---GNEVLTLKLGALGTYVLNKQ 138
+ E EFH+L + + +++E +E D+DY GN V+TL+ ++N+Q
Sbjct: 1 MNETEFHKLVDIQMQNIEEAIDE-------SEADIDYEVTGN-VMTLEFENRSQIIINRQ 52
Query: 139 TPNRQIWLSSP 149
P R+IWL+S
Sbjct: 53 EPMREIWLASK 63
>sp|Q6CZG6|CYAY_ERWCT Protein CyaY OS=Erwinia carotovora subsp. atroseptica (strain SCRI
1043 / ATCC BAA-672) GN=cyaY PE=3 SV=1
Length = 106
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPN 141
+ + EFH+LA+ + L+E +++ ID +++ G V+TL V+N+Q P
Sbjct: 1 MNDSEFHQLADELMLQLEETLDQFEGDADIDS-EINGG--VMTLSFENGSKIVINRQEPL 57
Query: 142 RQIWLSSPV----------RYYCGRS 157
QIWL++ R+ C RS
Sbjct: 58 HQIWLATKTGGYHFTLREERWVCDRS 83
>sp|P56977|CYAY_NEIMB Protein CyaY OS=Neisseria meningitidis serogroup B (strain MC58)
GN=cyaY PE=3 SV=1
Length = 107
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 81 LLQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTP 140
++ E EF R + + ++++ +E G FD + VLT++ G ++N+ TP
Sbjct: 1 MMTESEFIRASEALFEHIEDQIDENGWD-----FDCRFAGNVLTIEAGDGAQIIVNRHTP 55
Query: 141 NRQIWLSSPVRYY 153
N+++W+++ Y
Sbjct: 56 NQELWIAAKSGGY 68
>sp|C6DHB9|CYAY_PECCP Protein CyaY OS=Pectobacterium carotovorum subsp. carotovorum
(strain PC1) GN=cyaY PE=3 SV=1
Length = 106
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 19/89 (21%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEY-GDTIQIDGFDVDY--GNEVLTLKLGALGTYVLNKQ 138
+ + EFH+LA+ + L+E + + GD D+DY V+TL V+N+Q
Sbjct: 1 MNDSEFHQLADELMLQLEETLDRFEGDA------DIDYETNGGVMTLSFENGSKIVINRQ 54
Query: 139 TPNRQIWLSS----------PVRYYCGRS 157
P QIWL++ R+ C RS
Sbjct: 55 EPLHQIWLATKAGGYHFNRQETRWICDRS 83
>sp|Q88B06|CYAY_PSESM Protein CyaY OS=Pseudomonas syringae pv. tomato (strain DC3000)
GN=cyaY PE=3 SV=1
Length = 110
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNE--VLTLKLGALGTYVLNKQT 139
L E FH L ++T ++++ F+E G DVD N VLT+K + ++Q
Sbjct: 3 LTEARFHDLVDATQQNIEDVFDE-------SGLDVDLENSAGVLTVKFEGGSQLIFSRQE 55
Query: 140 PNRQIWLSSP 149
P RQ+WL++
Sbjct: 56 PLRQLWLAAK 65
>sp|P56993|CYAY_NEIMA Protein CyaY OS=Neisseria meningitidis serogroup A / serotype 4A
(strain Z2491) GN=cyaY PE=3 SV=1
Length = 107
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 81 LLQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTP 140
++ E EF R + + ++++ +E G FD + VLT++ G ++N+ TP
Sbjct: 1 MMTESEFIRASEALFEHIEDQIDENGWD-----FDCRFAGNVLTIEAGDGTQIIVNRHTP 55
Query: 141 NRQIWLSSPVRYY 153
N+++W+++ Y
Sbjct: 56 NQELWIAAKSGGY 68
>sp|A9M0Q0|CYAY_NEIM0 Protein CyaY OS=Neisseria meningitidis serogroup C (strain 053442)
GN=cyaY PE=3 SV=1
Length = 107
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 81 LLQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTP 140
++ E EF R + + ++++ +E G FD + VLT++ G ++N+ TP
Sbjct: 1 MMTESEFIRASEALFEHIEDQIDENGWD-----FDCRFAGNVLTIEAGDGTQIIVNRHTP 55
Query: 141 NRQIWLSSPVRYY 153
N+++W+++ Y
Sbjct: 56 NQELWIAAKSGGY 68
>sp|B4RRA8|CYAY_NEIG2 Protein CyaY OS=Neisseria gonorrhoeae (strain NCCP11945) GN=cyaY
PE=3 SV=1
Length = 107
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 81 LLQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTP 140
++ E EF R + + ++++ +E G FD + VLT++ G ++N+ TP
Sbjct: 1 MMTESEFIRASEALFEHIEDQIDENGWD-----FDCRFAGNVLTIEAGDGTQIIVNRHTP 55
Query: 141 NRQIWLSSPVRYY 153
N+++W+++ Y
Sbjct: 56 NQELWIAAKSGGY 68
>sp|Q5F536|CYAY_NEIG1 Protein CyaY OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA
1090) GN=cyaY PE=3 SV=1
Length = 107
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 81 LLQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTP 140
++ E EF R + + ++++ +E G FD + VLT++ G ++N+ TP
Sbjct: 1 MMTESEFIRASEALFEHIEDQIDENGWD-----FDCRFAGNVLTIEAGDGTQIIVNRHTP 55
Query: 141 NRQIWLSSPVRYY 153
N+++W+++ Y
Sbjct: 56 NQELWIAAKSGGY 68
>sp|Q7MQC4|CYAY_VIBVY Protein CyaY OS=Vibrio vulnificus (strain YJ016) GN=cyaY PE=3 SV=1
Length = 104
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 11/67 (16%)
Query: 86 EFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDY---GNEVLTLKLGALGTYVLNKQTPNR 142
EFH+L ++ + ++E +E G D+DY GN V+TL+ ++N+Q P +
Sbjct: 5 EFHQLVDNELQLIEEAIDE-------SGADIDYETTGN-VMTLEFDDRSQIIINRQEPMQ 56
Query: 143 QIWLSSP 149
+IWL+S
Sbjct: 57 EIWLASK 63
>sp|Q8DD83|CYAY_VIBVU Protein CyaY OS=Vibrio vulnificus (strain CMCP6) GN=cyaY PE=3 SV=1
Length = 104
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 11/67 (16%)
Query: 86 EFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDY---GNEVLTLKLGALGTYVLNKQTPNR 142
EFH+L ++ + ++E +E G D+DY GN V+TL+ ++N+Q P +
Sbjct: 5 EFHQLVDNELQLIEEAIDE-------SGADIDYETTGN-VMTLEFDDRSQIIINRQEPMQ 56
Query: 143 QIWLSSP 149
+IWL+S
Sbjct: 57 EIWLASK 63
>sp|A1KW58|CYAY_NEIMF Protein CyaY OS=Neisseria meningitidis serogroup C / serotype 2a
(strain ATCC 700532 / FAM18) GN=cyaY PE=3 SV=1
Length = 107
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 81 LLQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTP 140
++ E EF R + + ++++ +E G FD + VLT++ G ++N+ TP
Sbjct: 1 MMTESEFIRASEALFEHIEDQIDENGWD-----FDCRFAGNVLTIEAGDGTQIIVNRHTP 55
Query: 141 NRQIWLSSPVRYY 153
N+++W+++ Y
Sbjct: 56 NQELWIAAKSGGY 68
>sp|B8GQ85|CYAY_THISH Protein CyaY OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=cyaY PE=3
SV=1
Length = 107
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 87 FHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIWL 146
F A T+ L E+ E+ + D+D + VLTL+ G +LN+Q QIWL
Sbjct: 6 FSLHAEQTLESLLERMSEFD---ALADLDMDIIDGVLTLEFDDGGKLILNRQEAASQIWL 62
Query: 147 SSP 149
+SP
Sbjct: 63 ASP 65
>sp|C5BBD2|CYAY_EDWI9 Protein CyaY OS=Edwardsiella ictaluri (strain 93-146) GN=cyaY PE=3
SV=1
Length = 107
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEYGDTIQIDG-FDVDYGNEVLTLKLGALGTYVLNKQTP 140
+ + EFH LA+ L + EE D Q D D + V+TL V+N+Q P
Sbjct: 1 MNDSEFHLLADG----LMQALEEALDACQSDADIDCETNGGVMTLSFENGSKIVINRQEP 56
Query: 141 NRQIWLSSPVRYY 153
QIWL++ Y
Sbjct: 57 LHQIWLATRAGGY 69
>sp|Q87KJ1|CYAY_VIBPA Protein CyaY OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD
2210633) GN=cyaY PE=3 SV=1
Length = 104
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDY---GNEVLTLKLGALGTYVLNKQ 138
+ + EFH+L ++ + ++E +I G D+DY GN V+TL+ ++N+Q
Sbjct: 1 MNDTEFHQLVDAQMQIIEE-------SIDDSGADIDYEVSGN-VMTLEFEDRSQIIINRQ 52
Query: 139 TPNRQIWLSSP 149
P +IWL+S
Sbjct: 53 EPMHEIWLASK 63
>sp|P40128|CYAY_ERWCH Protein CyaY OS=Erwinia chrysanthemi GN=cyaY PE=3 SV=1
Length = 106
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 19/89 (21%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEY-GDTIQIDGFDVDY--GNEVLTLKLGALGTYVLNKQ 138
+ + EFH+LA++ + ++E +++ GD D+DY V+TL V+N+Q
Sbjct: 1 MNDSEFHQLADTLMLKVEETLDQFDGDA------DIDYETNGGVMTLSFENGSKIVINRQ 54
Query: 139 TPNRQIWLSSP----------VRYYCGRS 157
P Q+WL++ R+ C RS
Sbjct: 55 EPMHQVWLATKGGGYHFDYQHGRWICDRS 83
>sp|C3K433|CYAY_PSEFS Protein CyaY OS=Pseudomonas fluorescens (strain SBW25) GN=cyaY PE=3
SV=1
Length = 110
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNE--VLTLKLGALGTYVLNKQT 139
L E FH L +ST L++ F++ G DVD N VLT+K + + ++Q
Sbjct: 3 LTEARFHDLVDSTQQALEDIFDD-------SGLDVDLENSAGVLTVKFESGQQLIFSRQE 55
Query: 140 PNRQIWLSS 148
P RQ+WL++
Sbjct: 56 PLRQLWLAA 64
>sp|A4TRA5|CYAY_YERPP Protein CyaY OS=Yersinia pestis (strain Pestoides F) GN=cyaY PE=3
SV=1
Length = 106
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 19/89 (21%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEY-GDTIQIDGFDVDY--GNEVLTLKLGALGTYVLNKQ 138
+ + EFH+LA+ + ++E + + GD+ D+DY V+TL V+N+Q
Sbjct: 1 MNDSEFHQLADQLMLYIEETLDSFTGDS------DIDYETNGGVMTLTFENGSKIVINRQ 54
Query: 139 TPNRQIWLSSPV----------RYYCGRS 157
P Q+WL++ +YC RS
Sbjct: 55 EPLHQVWLATKAGGYHFNYRDGHWYCSRS 83
>sp|Q1CNI0|CYAY_YERPN Protein CyaY OS=Yersinia pestis bv. Antiqua (strain Nepal516)
GN=cyaY PE=3 SV=1
Length = 106
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 19/89 (21%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEY-GDTIQIDGFDVDY--GNEVLTLKLGALGTYVLNKQ 138
+ + EFH+LA+ + ++E + + GD+ D+DY V+TL V+N+Q
Sbjct: 1 MNDSEFHQLADQLMLYIEETLDSFTGDS------DIDYETNGGVMTLTFENGSKIVINRQ 54
Query: 139 TPNRQIWLSSPV----------RYYCGRS 157
P Q+WL++ +YC RS
Sbjct: 55 EPLHQVWLATKAGGYHFNYRDGHWYCSRS 83
>sp|A9R8K3|CYAY_YERPG Protein CyaY OS=Yersinia pestis bv. Antiqua (strain Angola) GN=cyaY
PE=3 SV=1
Length = 106
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 19/89 (21%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEY-GDTIQIDGFDVDY--GNEVLTLKLGALGTYVLNKQ 138
+ + EFH+LA+ + ++E + + GD+ D+DY V+TL V+N+Q
Sbjct: 1 MNDSEFHQLADQLMLYIEETLDSFTGDS------DIDYETNGGVMTLTFENGSKIVINRQ 54
Query: 139 TPNRQIWLSSPV----------RYYCGRS 157
P Q+WL++ +YC RS
Sbjct: 55 EPLHQVWLATKAGGYHFNYRDGHWYCSRS 83
>sp|P46356|CYAY_YERPE Protein CyaY OS=Yersinia pestis GN=cyaY PE=3 SV=1
Length = 106
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 19/89 (21%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEY-GDTIQIDGFDVDY--GNEVLTLKLGALGTYVLNKQ 138
+ + EFH+LA+ + ++E + + GD+ D+DY V+TL V+N+Q
Sbjct: 1 MNDSEFHQLADQLMLYIEETLDSFTGDS------DIDYETNGGVMTLTFENGSKIVINRQ 54
Query: 139 TPNRQIWLSSPV----------RYYCGRS 157
P Q+WL++ +YC RS
Sbjct: 55 EPLHQVWLATKAGGYHFNYRDGHWYCSRS 83
>sp|Q1CBM8|CYAY_YERPA Protein CyaY OS=Yersinia pestis bv. Antiqua (strain Antiqua)
GN=cyaY PE=3 SV=1
Length = 106
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 19/89 (21%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEY-GDTIQIDGFDVDY--GNEVLTLKLGALGTYVLNKQ 138
+ + EFH+LA+ + ++E + + GD+ D+DY V+TL V+N+Q
Sbjct: 1 MNDSEFHQLADQLMLYIEETLDSFTGDS------DIDYETNGGVMTLTFENGSKIVINRQ 54
Query: 139 TPNRQIWLSSPV----------RYYCGRS 157
P Q+WL++ +YC RS
Sbjct: 55 EPLHQVWLATKAGGYHFNYRDGHWYCSRS 83
>sp|A1JI88|CYAY_YERE8 Protein CyaY OS=Yersinia enterocolitica serotype O:8 / biotype 1B
(strain 8081) GN=cyaY PE=3 SV=1
Length = 106
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 25/92 (27%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGF----DVDY--GNEVLTLKLGALGTYVL 135
+ + EFH+LA+ + ++E +DGF D+DY V+TL V+
Sbjct: 1 MNDSEFHQLADQLMLCIEET---------LDGFSGDSDIDYETNGGVMTLTFENGSKIVI 51
Query: 136 NKQTPNRQIWLSSPV----------RYYCGRS 157
N+Q P Q+WL++ +YC RS
Sbjct: 52 NRQEPLHQVWLATKAGGYHFDYREGHWYCSRS 83
>sp|Q8FBN9|CYAY_ECOL6 Protein CyaY OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928
/ UPEC) GN=cyaY PE=3 SV=1
Length = 106
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPN 141
+ + EFHRLA+ ++E +++G I D + VLT+ ++N+Q P
Sbjct: 1 MNDSEFHRLADQLWLTIEEHLDDWGGDSDI---DCEINGGVLTITFENGSKIIINRQEPL 57
Query: 142 RQIWLSSPVRYY 153
Q+WL++ Y
Sbjct: 58 HQVWLATKQGGY 69
>sp|A7N0W3|CYAY_VIBHB Protein CyaY OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120)
GN=cyaY PE=3 SV=1
Length = 104
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 82 LQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDY---GNEVLTLKLGALGTYVLNKQ 138
+ + EFH+L ++ + ++E +I G D+DY GN V+TL+ ++N+Q
Sbjct: 1 MNDTEFHQLVDAQMQLIEE-------SIDDSGADIDYEVTGN-VMTLEFEDRSQIIINRQ 52
Query: 139 TPNRQIWLSSP 149
P +IWL+S
Sbjct: 53 EPMHEIWLASK 63
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,184,598
Number of Sequences: 539616
Number of extensions: 2435565
Number of successful extensions: 5945
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 5823
Number of HSP's gapped (non-prelim): 171
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)