Query 036786
Match_columns 158
No_of_seqs 166 out of 431
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 08:47:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t3l_A Frataxin, mitochondrial 100.0 5.9E-32 2E-36 207.9 8.0 80 79-158 6-87 (129)
2 3oeq_A Frataxin homolog, mitoc 100.0 3E-32 1E-36 208.4 5.1 89 67-158 5-93 (123)
3 1ew4_A CYAY protein; friedreic 100.0 1.2E-31 3.9E-36 199.9 7.7 73 82-158 1-73 (106)
4 3gla_A Low molecular weight he 73.2 2.1 7.2E-05 29.3 2.5 22 108-129 75-96 (100)
5 3q9p_A Heat shock protein beta 71.2 2.3 7.7E-05 28.8 2.2 24 106-129 59-83 (85)
6 4fei_A Heat shock protein-rela 71.1 2.5 8.6E-05 29.4 2.5 22 108-129 72-93 (102)
7 2y1y_A Alpha-crystallin B chai 69.3 3.2 0.00011 28.2 2.7 23 107-129 59-82 (90)
8 1xkp_B Chaperone protein SYCN; 68.7 4.8 0.00016 30.4 3.7 53 98-152 4-56 (124)
9 2wj5_A Heat shock protein beta 67.0 4.5 0.00015 28.2 3.1 24 106-129 63-87 (101)
10 3l1e_A Alpha-crystallin A chai 66.5 3.7 0.00013 28.9 2.6 24 106-129 64-88 (106)
11 1xhj_A Nitrogen fixation prote 62.8 7 0.00024 27.5 3.4 41 82-129 3-46 (88)
12 3aab_A Putative uncharacterize 62.4 3.8 0.00013 29.3 2.1 23 107-129 91-114 (123)
13 4eld_A MJ16.5-P1, small heat s 61.5 4 0.00014 30.6 2.1 23 107-129 127-149 (161)
14 1gme_A Heat shock protein 16.9 56.9 5.4 0.00018 29.8 2.1 23 107-129 114-136 (151)
15 2klr_A Alpha-crystallin B chai 51.8 7.7 0.00026 30.0 2.3 25 105-129 124-149 (175)
16 2bol_A TSP36, small heat shock 48.5 6.9 0.00023 33.1 1.7 25 105-129 288-312 (314)
17 1mby_A SAK, serine/threonine k 41.8 21 0.00071 25.5 3.1 37 113-151 15-51 (88)
18 2nvn_A Hypothetical protein; s 39.7 44 0.0015 25.1 4.7 49 79-128 33-82 (122)
19 2bol_A TSP36, small heat shock 37.2 16 0.00055 30.8 2.2 24 106-129 163-187 (314)
20 2pi2_E Replication protein A 1 32.8 37 0.0013 25.6 3.4 22 119-140 58-79 (142)
21 2it9_A Hypothetical protein; s 31.9 45 0.0016 25.1 3.7 49 79-128 31-80 (127)
22 2l7y_A Putative endo-beta-N-ac 25.0 1.1E+02 0.0037 21.9 4.5 28 113-140 22-49 (98)
23 3p34_A Serine/threonine-protei 24.9 59 0.002 26.4 3.5 22 117-138 162-184 (232)
24 3kdf_A Replication protein A 1 23.2 81 0.0028 22.9 3.7 23 119-141 37-59 (121)
25 3f42_A Protein HP0035; helicob 22.6 42 0.0014 23.8 2.0 38 96-133 13-50 (99)
26 1yop_A KTI11P; zinc finger, me 22.0 81 0.0028 21.9 3.3 32 107-138 6-37 (83)
27 2npb_A Selenoprotein W; struct 21.7 1.5E+02 0.0052 20.7 4.8 44 87-138 15-61 (96)
28 2o97_B NS1, HU-1, DNA-binding 20.6 1.9E+02 0.0066 19.1 6.3 40 80-127 14-54 (90)
29 4fcc_A Glutamate dehydrogenase 20.4 89 0.003 27.8 4.0 54 84-137 24-81 (450)
30 1j8b_A YBAB; hypothetical prot 20.3 49 0.0017 23.8 1.9 20 114-133 36-55 (112)
No 1
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=99.97 E-value=5.9e-32 Score=207.88 Aligned_cols=80 Identities=46% Similarity=0.760 Sum_probs=71.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhccCcc-CCCCcceeecCceEEEEEC-CCcEEEEeCCCCcceeeeecCCCccCcc
Q 036786 79 RSLLQEDEFHRLANSTIHDLQEKFEEYGDTI-QIDGFDVDYGNEVLTLKLG-ALGTYVLNKQTPNRQIWLSSPVRYYCGR 156 (158)
Q Consensus 79 ~s~mte~eF~~lAd~~L~~L~e~lE~~~d~~-~~~d~Dve~s~GVLTI~f~-d~gtyVINKQ~PnkQIWLSSPisG~~~~ 156 (158)
++.|++.|||++||++|+.|+++||++.|+. ...|+|||+++|||||+|+ ++||||||||+||||||||||+||..|+
T Consensus 6 ~~~m~e~ef~~lad~~L~~ie~~le~~~d~~~~~~d~D~e~~~gVLti~f~~~~g~~VINkQ~P~~QIWLASp~SGp~hf 85 (129)
T 3t3l_A 6 PGSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKAIWLSSPSSGPKRY 85 (129)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHTSTTSCTTCEEEEETTEEEEECCTTCCEEEEEEETTTTEEEEECSSSCCEEE
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeecCCCEEEEEEcCCCCEEEEeCCchhhHhheeCCCCCCeee
Confidence 5679999999999999999999999987652 2367999999999999997 8999999999999999999999999888
Q ss_pred cC
Q 036786 157 SY 158 (158)
Q Consensus 157 ~~ 158 (158)
.|
T Consensus 86 d~ 87 (129)
T 3t3l_A 86 DW 87 (129)
T ss_dssp EE
T ss_pred Ee
Confidence 76
No 2
>3oeq_A Frataxin homolog, mitochondrial; alpha/beta sandwich, metallochaperone, iron-storage, transpo protein; 2.96A {Saccharomyces cerevisiae} SCOP: d.82.2.1 PDB: 2fql_A 3oer_A 2ga5_A
Probab=99.97 E-value=3e-32 Score=208.41 Aligned_cols=89 Identities=31% Similarity=0.451 Sum_probs=78.5
Q ss_pred CCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHhhccCccCCCCcceeecCceEEEEECCCcEEEEeCCCCcceeee
Q 036786 67 DSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIWL 146 (158)
Q Consensus 67 ~~~~~~p~~~~~~s~mte~eF~~lAd~~L~~L~e~lE~~~d~~~~~d~Dve~s~GVLTI~f~d~gtyVINKQ~PnkQIWL 146 (158)
|.+...|..+ ..|++.+||++||++|+.|++.||++.|+.+.+++|||+++|||||+|+++||||||||+|||||||
T Consensus 5 t~g~~~p~~~---~~l~~~efh~lad~~L~~L~~~lE~~~d~~~~d~~Dve~~~gVLti~f~~~~~~VINkQ~P~~QIWl 81 (123)
T 3oeq_A 5 TDGQVVPQEV---LNLPLEKAHEEADDYLDHLLDSLEELSEAHPDCIPDVELSHGVMTLEIPAFGTYVINKQPPNKQIWL 81 (123)
T ss_dssp CCCCCCCSTT---TTSCCCCCCCHHHHHHHHHHHHHTTTSSSCSSCCCEEEECSSEEEEECTTTCCEEEECCCSSSCCEE
T ss_pred cCCccCCCcc---ccCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcceEEEccCCEEEEEECCCCEEEEeCCChhhHHhe
Confidence 4455566665 4699999999999999999999999887655445899999999999999999999999999999999
Q ss_pred ecCCCccCcccC
Q 036786 147 SSPVRYYCGRSY 158 (158)
Q Consensus 147 SSPisG~~~~~~ 158 (158)
|||+||+.|+.|
T Consensus 82 aSp~SGp~hfd~ 93 (123)
T 3oeq_A 82 ASPLSGPNRFDL 93 (123)
T ss_dssp EETTTEEEEEEE
T ss_pred ecCCCCCeeEee
Confidence 999999888865
No 3
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=99.97 E-value=1.2e-31 Score=199.85 Aligned_cols=73 Identities=23% Similarity=0.471 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhccCccCCCCcceeecCceEEEEECCCcEEEEeCCCCcceeeeecCCCccCcccC
Q 036786 82 LQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIWLSSPVRYYCGRSY 158 (158)
Q Consensus 82 mte~eF~~lAd~~L~~L~e~lE~~~d~~~~~d~Dve~s~GVLTI~f~d~gtyVINKQ~PnkQIWLSSPisG~~~~~~ 158 (158)
|++.+||++||++|+.|+++||++.+ ..|+|||+++|||||+|+++||||||||+||||||||||+|| .|+.|
T Consensus 1 m~~~ef~~lad~~l~~ie~~le~~~~---~~d~D~e~~~gVLti~f~~~~~~VINkQ~P~~QIWlaSp~sG-~hfd~ 73 (106)
T 1ew4_A 1 MNDSEFHRLADQLWLTIEERLDDWDG---DSDIDCEINGGVLTITFENGSKIIINRQEPLHQVWLATKQGG-YHFDL 73 (106)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCCS---SSCCEEEEETTEEEEECTTSCEEEEEEETTTTEEEEECSSCE-EEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcc---CCCEeeeccCCEEEEEECCCCEEEEeCCchhhhheEecCCCc-eeeee
Confidence 89999999999999999999998633 256899999999999999999999999999999999999999 77765
No 4
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=73.19 E-value=2.1 Score=29.31 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=17.2
Q ss_pred ccCCCCcceeecCceEEEEECC
Q 036786 108 TIQIDGFDVDYGNEVLTLKLGA 129 (158)
Q Consensus 108 ~~~~~d~Dve~s~GVLTI~f~d 129 (158)
.++.+.+...+.+|||+|+++.
T Consensus 75 ~vd~~~i~A~~~~GvL~I~~pK 96 (100)
T 3gla_A 75 SADADGITAAGRNGVLEIRIPK 96 (100)
T ss_dssp TBCTTSCEEEEETTEEEEEEEB
T ss_pred CcChHHeEEEEeCCEEEEEEec
Confidence 3444567789999999999974
No 5
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=71.18 E-value=2.3 Score=28.84 Aligned_cols=24 Identities=8% Similarity=0.052 Sum_probs=18.1
Q ss_pred cCccCCCCcceeec-CceEEEEECC
Q 036786 106 GDTIQIDGFDVDYG-NEVLTLKLGA 129 (158)
Q Consensus 106 ~d~~~~~d~Dve~s-~GVLTI~f~d 129 (158)
.+.++.+.+...+. +|||+|+++.
T Consensus 59 P~~vd~~~i~A~~~~~GvL~I~lPK 83 (85)
T 3q9p_A 59 PPGVDPTQVSSSLSPEGTLTVEAPM 83 (85)
T ss_dssp CTTCCGGGCEEEECTTSEEEEEEEC
T ss_pred CCCcChHHcEEEECCCCEEEEEEEc
Confidence 34455556778897 9999999974
No 6
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=71.07 E-value=2.5 Score=29.36 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=17.1
Q ss_pred ccCCCCcceeecCceEEEEECC
Q 036786 108 TIQIDGFDVDYGNEVLTLKLGA 129 (158)
Q Consensus 108 ~~~~~d~Dve~s~GVLTI~f~d 129 (158)
.++.+.+...|.+|||+|+++.
T Consensus 72 ~vd~~~i~A~~~~GvL~I~lpK 93 (102)
T 4fei_A 72 PVRPASGVASLAGGVLTVRFEK 93 (102)
T ss_dssp CBCTTCCEEEEETTEEEEEEEB
T ss_pred CcchhHcEEEEECCEEEEEEEc
Confidence 3444567789999999999975
No 7
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=69.29 E-value=3.2 Score=28.20 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=17.5
Q ss_pred CccCCCCcceee-cCceEEEEECC
Q 036786 107 DTIQIDGFDVDY-GNEVLTLKLGA 129 (158)
Q Consensus 107 d~~~~~d~Dve~-s~GVLTI~f~d 129 (158)
+.++.+.+...+ .+|||+|+++.
T Consensus 59 ~~vd~~~i~A~~~~~GvL~I~~pK 82 (90)
T 2y1y_A 59 ADVDPLTITSSMSSDGVLTVNGPR 82 (90)
T ss_dssp TTBCGGGCEEEECTTSEEEEEECB
T ss_pred CCcChhHcEEEECCCCEEEEEEEc
Confidence 344445577899 79999999985
No 8
>1xkp_B Chaperone protein SYCN; YOPN, type III secretion, SYCN, membrane PR chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: d.198.1.1
Probab=68.73 E-value=4.8 Score=30.45 Aligned_cols=53 Identities=11% Similarity=0.330 Sum_probs=40.1
Q ss_pred HHHHHhhccCccCCCCcceeecCceEEEEECCCcEEEEeCCCCcceeeeecCCCc
Q 036786 98 LQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIWLSSPVRY 152 (158)
Q Consensus 98 L~e~lE~~~d~~~~~d~Dve~s~GVLTI~f~d~gtyVINKQ~PnkQIWLSSPisG 152 (158)
|+..|+++....-.+++| -.+|++.++|+..|+.-|-++.=--=+|||-++.-
T Consensus 4 I~~~i~~F~r~mG~~~~~--~~~gliqLd~E~sGtL~iE~~~~~L~l~LAr~lp~ 56 (124)
T 1xkp_B 4 IEPIISHFCQDLGVPTSS--PLSPLIQLEMAQSGTLQLEQHGATLTLWLARSLAW 56 (124)
T ss_dssp THHHHHHHHHHTTCCCCS--SCCSEEEEEETTTEEEEEEEETTEEEEEEEEECCG
T ss_pred hHHHHHHHHHHcCCCCCC--CCCceEEEEeccCceEEEeecCCEEEEEEeccCCh
Confidence 445555554333334455 47999999999999999999988888999988864
No 9
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=67.01 E-value=4.5 Score=28.18 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=18.6
Q ss_pred cCccCCCCcceee-cCceEEEEECC
Q 036786 106 GDTIQIDGFDVDY-GNEVLTLKLGA 129 (158)
Q Consensus 106 ~d~~~~~d~Dve~-s~GVLTI~f~d 129 (158)
.++++.+.+...| .+|||+|+++.
T Consensus 63 P~~vd~~~i~A~~s~nGvL~I~lPK 87 (101)
T 2wj5_A 63 PPGVDPAAVTSALSPEGVLSIQATP 87 (101)
T ss_dssp CTTBCTTCCEEEECTTSEEEEEECB
T ss_pred CCCcChhHCEEEECCCCEEEEEEEC
Confidence 3455556678899 79999999985
No 10
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=66.54 E-value=3.7 Score=28.92 Aligned_cols=24 Identities=8% Similarity=0.158 Sum_probs=18.7
Q ss_pred cCccCCCCcceee-cCceEEEEECC
Q 036786 106 GDTIQIDGFDVDY-GNEVLTLKLGA 129 (158)
Q Consensus 106 ~d~~~~~d~Dve~-s~GVLTI~f~d 129 (158)
.++++.+.+...| .+|||+|+++.
T Consensus 64 P~~vd~~~i~A~~s~~GvL~I~~PK 88 (106)
T 3l1e_A 64 PSNVDQSALSCSLSADGMLTFSGPK 88 (106)
T ss_dssp CTTBCTTSCEEEECTTSEEEEEEEB
T ss_pred CCCcChhHcEEEECCCCEEEEEEEc
Confidence 3445556688999 79999999985
No 11
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=62.84 E-value=7 Score=27.52 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhccCccCCCCcceee---cCceEEEEECC
Q 036786 82 LQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDY---GNEVLTLKLGA 129 (158)
Q Consensus 82 mte~eF~~lAd~~L~~L~e~lE~~~d~~~~~d~Dve~---s~GVLTI~f~d 129 (158)
|++.+-.+.++++|+.|.-.|.. +|-|+++ .+|++.|.+..
T Consensus 3 ~t~~~~~~~I~~~L~~IRP~L~~-------dGGdvelv~v~~g~V~V~L~G 46 (88)
T 1xhj_A 3 TENPTMFDQVAEVIERLRPFLLR-------DGGDCTLVDVEDGIVKLQLHG 46 (88)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHH-------HSCEEEEEECCSSEEEEEEES
T ss_pred CChHHHHHHHHHHHHHhcHHHHh-------cCCeEEEEEEECCEEEEEEee
Confidence 55556667788888888877776 3445443 58999999853
No 12
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=62.38 E-value=3.8 Score=29.27 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=18.1
Q ss_pred CccCCCCc-ceeecCceEEEEECC
Q 036786 107 DTIQIDGF-DVDYGNEVLTLKLGA 129 (158)
Q Consensus 107 d~~~~~d~-Dve~s~GVLTI~f~d 129 (158)
+.++.+.+ ...+.+|||+|+++.
T Consensus 91 ~~vd~~~i~~A~~~~GvL~I~lPK 114 (123)
T 3aab_A 91 YNVAKDAEISGKYENGVLTIRIPI 114 (123)
T ss_dssp SEECTTCCCEEEEETTEEEEEEEG
T ss_pred CCcCcchhCeeEEcCCEEEEEEEc
Confidence 44455667 889999999999985
No 13
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=61.50 E-value=4 Score=30.60 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=17.7
Q ss_pred CccCCCCcceeecCceEEEEECC
Q 036786 107 DTIQIDGFDVDYGNEVLTLKLGA 129 (158)
Q Consensus 107 d~~~~~d~Dve~s~GVLTI~f~d 129 (158)
+.++.+.+...|.+|||+|+++.
T Consensus 127 ~~vd~~~i~A~~~nGvL~I~lpK 149 (161)
T 4eld_A 127 ATVKEENASAKFENGVLSVILPK 149 (161)
T ss_dssp SCBCGGGCEEEEETTEEEEEEEB
T ss_pred CCcccccEEEEEECCEEEEEEEc
Confidence 44544557778999999999985
No 14
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=56.91 E-value=5.4 Score=29.80 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=17.7
Q ss_pred CccCCCCcceeecCceEEEEECC
Q 036786 107 DTIQIDGFDVDYGNEVLTLKLGA 129 (158)
Q Consensus 107 d~~~~~d~Dve~s~GVLTI~f~d 129 (158)
+.++.+.+...|.+|||+|+++.
T Consensus 114 ~~vd~~~i~A~~~nGvL~I~lPK 136 (151)
T 1gme_A 114 EDAKVEEVKAGLENGVLTVTVPK 136 (151)
T ss_dssp SCCCGGGCEEEEETTEEEEEEEC
T ss_pred CCccccceEEEEECCEEEEEEEc
Confidence 34444556788999999999986
No 15
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=51.85 E-value=7.7 Score=30.00 Aligned_cols=25 Identities=12% Similarity=0.028 Sum_probs=19.7
Q ss_pred ccCccCCCCcceee-cCceEEEEECC
Q 036786 105 YGDTIQIDGFDVDY-GNEVLTLKLGA 129 (158)
Q Consensus 105 ~~d~~~~~d~Dve~-s~GVLTI~f~d 129 (158)
+.++++.+.+...+ .+|||+|+++.
T Consensus 124 LP~~Vd~~~i~A~~s~dGvL~I~lPK 149 (175)
T 2klr_A 124 IPADVDPLTITSSLSSDGVLTVNGPR 149 (175)
T ss_dssp CTTTCCTTTCEEEECTTSCEEEEEEC
T ss_pred CCCCcChhHeEEEEcCCCEEEEEEEC
Confidence 34556666788899 69999999986
No 16
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=48.53 E-value=6.9 Score=33.14 Aligned_cols=25 Identities=0% Similarity=0.060 Sum_probs=19.5
Q ss_pred ccCccCCCCcceeecCceEEEEECC
Q 036786 105 YGDTIQIDGFDVDYGNEVLTLKLGA 129 (158)
Q Consensus 105 ~~d~~~~~d~Dve~s~GVLTI~f~d 129 (158)
+.++++.+.+.+.|.+|||||+++.
T Consensus 288 LP~~vd~~~i~A~~~dGvL~i~~Pk 312 (314)
T 2bol_A 288 TPEVVDASKTQAEIVDGLMVVEAPL 312 (314)
T ss_dssp CSSEECGGGCEEEEETTEEEEEEEE
T ss_pred CCCCcChHHeEEEEeCCEEEEEEec
Confidence 3456666678889999999999863
No 17
>1mby_A SAK, serine/threonine kinase; POLO domain, strand exchange, transferase; 2.00A {Mus musculus} SCOP: d.223.1.1
Probab=41.76 E-value=21 Score=25.49 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=29.2
Q ss_pred CcceeecCceEEEEECCCcEEEEeCCCCcceeeeecCCC
Q 036786 113 GFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIWLSSPVR 151 (158)
Q Consensus 113 d~Dve~s~GVLTI~f~d~gtyVINKQ~PnkQIWLSSPis 151 (158)
|.-.+++.|++.|.|.||++.+++.+. --|=.++|-|
T Consensus 15 G~AsQLs~G~V~VQf~DGS~L~~~p~~--~~ItYt~~~G 51 (88)
T 1mby_A 15 GWATQLTSGAVWVQFNDGSQLVMQAGV--SSISYTSPDG 51 (88)
T ss_dssp EEEECSSEEEEEEEETTSCEEEEEEEE--EEEEEECTTS
T ss_pred eEEEeecCccEEEEEcCCCEEEEecCc--ceeEEeCCCC
Confidence 455688999999999999999999665 4666666654
No 18
>2nvn_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 2.50A {Synechococcus elongatus} SCOP: d.18.1.3
Probab=39.68 E-value=44 Score=25.07 Aligned_cols=49 Identities=12% Similarity=0.209 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhccCc-cCCCCcceeecCceEEEEEC
Q 036786 79 RSLLQEDEFHRLANSTIHDLQEKFEEYGDT-IQIDGFDVDYGNEVLTLKLG 128 (158)
Q Consensus 79 ~s~mte~eF~~lAd~~L~~L~e~lE~~~d~-~~~~d~Dve~s~GVLTI~f~ 128 (158)
..+||+.||..++ ..+..|.+.+..+.|+ .+.+-+.+|...+.+-+.++
T Consensus 33 AiELTe~E~~~f~-~Ll~qL~~~~~~i~~eLM~EE~I~lE~E~~~~W~ele 82 (122)
T 2nvn_A 33 AVELTAAEMADFC-RLVQQLAETIAAIAPELMPEERLQIEAESALLWLEAE 82 (122)
T ss_dssp EEEECHHHHHHHH-HHHHHHHHHHHTSCCCSSCSSCEEEEEECSSEEEEEE
T ss_pred heeeCHHHHHHHH-HHHHHHHHHHHHHHHHhcchhheeeeecCccEEEEee
Confidence 3458999999998 6888888888887654 23344778888898888886
No 19
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=37.16 E-value=16 Score=30.82 Aligned_cols=24 Identities=8% Similarity=0.216 Sum_probs=18.0
Q ss_pred cCccCCCCcceeec-CceEEEEECC
Q 036786 106 GDTIQIDGFDVDYG-NEVLTLKLGA 129 (158)
Q Consensus 106 ~d~~~~~d~Dve~s-~GVLTI~f~d 129 (158)
.+.++.+.+...|. +|||+|+++.
T Consensus 163 P~~Vd~e~i~A~~~~nGVL~I~lPK 187 (314)
T 2bol_A 163 PPSVDRNHIQATITTDDVLVIEAPV 187 (314)
T ss_dssp CTTBCGGGCEEEECSSSEEEEEEEB
T ss_pred CCCccccccEEEEeCCCEEEEEEec
Confidence 34455556777898 9999999983
No 20
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=32.79 E-value=37 Score=25.63 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=20.3
Q ss_pred cCceEEEEECCCcEEEEeCCCC
Q 036786 119 GNEVLTLKLGALGTYVLNKQTP 140 (158)
Q Consensus 119 s~GVLTI~f~d~gtyVINKQ~P 140 (158)
.|+.++|+..|+++..|+-.+|
T Consensus 58 ~G~~~~l~s~Dg~~VtV~l~~p 79 (142)
T 2pi2_E 58 TGKMFILSDGEGKNGTIELMEP 79 (142)
T ss_dssp TSSEEEEECTTSCEEEEECSSC
T ss_pred CCCEEEEEeCCCcEEEEEeCCC
Confidence 7899999999999999998877
No 21
>2it9_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; HET: MSE PGE; 1.80A {Prochlorococcus marinus} SCOP: d.18.1.3
Probab=31.88 E-value=45 Score=25.14 Aligned_cols=49 Identities=10% Similarity=0.196 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhccCc-cCCCCcceeecCceEEEEEC
Q 036786 79 RSLLQEDEFHRLANSTIHDLQEKFEEYGDT-IQIDGFDVDYGNEVLTLKLG 128 (158)
Q Consensus 79 ~s~mte~eF~~lAd~~L~~L~e~lE~~~d~-~~~~d~Dve~s~GVLTI~f~ 128 (158)
..+||+.||..++ ..+..|.+.+..+.|+ .+++-+.+|...+.+-+.++
T Consensus 31 AiELTe~E~~~f~-~Ll~qL~~~~~~i~~eLM~EE~I~lE~E~~~~W~ele 80 (127)
T 2it9_A 31 AIELDKSEWKILV-EVVMELCDQYKLVKEQLMGDEDITLELERRPWLAILN 80 (127)
T ss_dssp EEEECHHHHHHHH-HHHHHHHHHHHHHTTTCCTTCEEEEEEEETTEEEEEE
T ss_pred eeeecHHHHHHHH-HHHHHHHHHHHHHHHHhcchhheeeeecCccEEEEee
Confidence 3458999999988 6777788877776554 22334778888888888886
No 22
>2l7y_A Putative endo-beta-N-acetylglucosaminidase; putative surface protein, structural protein; NMR {Streptococcus pneumoniae}
Probab=24.96 E-value=1.1e+02 Score=21.92 Aligned_cols=28 Identities=7% Similarity=-0.038 Sum_probs=23.1
Q ss_pred CcceeecCceEEEEECCCcEEEEeCCCC
Q 036786 113 GFDVDYGNEVLTLKLGALGTYVLNKQTP 140 (158)
Q Consensus 113 d~Dve~s~GVLTI~f~d~gtyVINKQ~P 140 (158)
|-++|++|+++++.+.|+.+-.+|-..+
T Consensus 22 GE~LDltGl~v~~~YsDgt~~~~~lt~~ 49 (98)
T 2l7y_A 22 GDSLDLSEGRFAVAYSNDTMEEHSFTDE 49 (98)
T ss_dssp TTCCCCCSCEEEEEETTSCEEEEESCCT
T ss_pred CCccccCCCEEEEEEcCCCEEEEecccC
Confidence 3467999999999999999888876554
No 23
>3p34_A Serine/threonine-protein kinase PLK1; phosphoprotein binding domain, PLK1, kinase, transferase; HET: TPO; 1.40A {Homo sapiens} PDB: 3p2z_A* 3p2w_A* 3p35_A* 3p36_A* 3p37_A* 3q1i_A* 4e67_A* 4e9c_A* 4e9d_A* 2ogq_A 2ojs_A* 2ojx_A 3bzi_A* 3mhn_A* 3mhq_A 3mq8_B* 4h5x_B 4h70_B* 4h71_B* 4hco_B* ...
Probab=24.86 E-value=59 Score=26.42 Aligned_cols=22 Identities=9% Similarity=0.140 Sum_probs=19.3
Q ss_pred eecCceEEEEE-CCCcEEEEeCC
Q 036786 117 DYGNEVLTLKL-GALGTYVLNKQ 138 (158)
Q Consensus 117 e~s~GVLTI~f-~d~gtyVINKQ 138 (158)
.+++|.+.++| .|+.++||+..
T Consensus 162 ~LSngtvQVNF~~DhtKlILs~~ 184 (232)
T 3p34_A 162 HLSNGSVQINFFQDHTKLILCPL 184 (232)
T ss_dssp EETTSCEEEEETTTCCEEEEETT
T ss_pred EecCCCEEEEEcCCCcEEEEeCC
Confidence 45899999999 79999999954
No 24
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=23.22 E-value=81 Score=22.93 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=20.7
Q ss_pred cCceEEEEECCCcEEEEeCCCCc
Q 036786 119 GNEVLTLKLGALGTYVLNKQTPN 141 (158)
Q Consensus 119 s~GVLTI~f~d~gtyVINKQ~Pn 141 (158)
.|+.++|+..|+|+.-|+-.+|.
T Consensus 37 ~g~~~~l~s~Dg~~Vtv~l~~p~ 59 (121)
T 3kdf_A 37 TGKMFILSDGEGKNGTIELMEPL 59 (121)
T ss_dssp TSSEEEEECTTSCEEEEECSSCC
T ss_pred CCCEEEEEeCCCCEEEEEeCCCC
Confidence 58899999999999999998876
No 25
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=22.62 E-value=42 Score=23.84 Aligned_cols=38 Identities=11% Similarity=0.286 Sum_probs=21.3
Q ss_pred HHHHHHHhhccCccCCCCcceeecCceEEEEECCCcEE
Q 036786 96 HDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTY 133 (158)
Q Consensus 96 ~~L~e~lE~~~d~~~~~d~Dve~s~GVLTI~f~d~gty 133 (158)
..+++.+++..++...-.++....||.+++++...+.+
T Consensus 13 q~mQ~~m~~~QeeL~~~~v~g~sggG~V~Vt~~G~~ev 50 (99)
T 3f42_A 13 DGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGEL 50 (99)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEGGGTEEEEEETTSCE
T ss_pred HHHHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceE
Confidence 44455554443322112345556789999999765544
No 26
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=22.00 E-value=81 Score=21.87 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=25.9
Q ss_pred CccCCCCcceeecCceEEEEECCCcEEEEeCC
Q 036786 107 DTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQ 138 (158)
Q Consensus 107 d~~~~~d~Dve~s~GVLTI~f~d~gtyVINKQ 138 (158)
|.++++|++.|-..++.+..++=|+.|+|.+.
T Consensus 6 dev~leDm~~de~~~~y~ypCrCGd~F~it~e 37 (83)
T 1yop_A 6 DEIEIEDMTFEPENQMFTYPCPCGDRFQIYLD 37 (83)
T ss_dssp BCCBGGGSEEETTTTEEEEEETTTEEEEEEHH
T ss_pred eEEEHHHcEEcCCCCEEEEeCCCCCeEEECHH
Confidence 44566778888888999999988899999764
No 27
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=21.69 E-value=1.5e+02 Score=20.69 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCccCCCCcceee---cCceEEEEECCCcEEEEeCC
Q 036786 87 FHRLANSTIHDLQEKFEEYGDTIQIDGFDVDY---GNEVLTLKLGALGTYVLNKQ 138 (158)
Q Consensus 87 F~~lAd~~L~~L~e~lE~~~d~~~~~d~Dve~---s~GVLTI~f~d~gtyVINKQ 138 (158)
|...|..+-+.|++.+.+. . ++.++. ++|+..|.+ +|+.|.+|-
T Consensus 15 y~~ra~~laqeLl~~Fp~~---l---~V~~~l~p~~~G~FEV~v--ng~lV~SKk 61 (96)
T 2npb_A 15 YKPKYLQLKEKLEHEFPGC---L---DICGEGTPQVTGFFEVTV--AGKLVHSKK 61 (96)
T ss_dssp HHHHHHHHHHHHHHHSBTT---E---EEEECCCSSCCSCCEEEE--TTEEEEETT
T ss_pred CHHHHHHHHHHHHHhCCcc---e---EEEEEEcCCCCcEEEEEE--CCEEEEEEe
Confidence 5556666666666666541 0 112222 579999999 367777663
No 28
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=20.62 E-value=1.9e+02 Score=19.11 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhccCccCCCCcceeecC-ceEEEEE
Q 036786 80 SLLQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGN-EVLTLKL 127 (158)
Q Consensus 80 s~mte~eF~~lAd~~L~~L~e~lE~~~d~~~~~d~Dve~s~-GVLTI~f 127 (158)
+.++..+=....|.+++.|.+.|.+ |-.|.+.| |...+..
T Consensus 14 ~~ls~~~~~~~l~~~~~~i~~~L~~--------g~~V~l~gfG~F~v~~ 54 (90)
T 2o97_B 14 ADISKAAAGRALDAIIASVTESLKE--------GDDVALVGFGTFAVKE 54 (90)
T ss_dssp TC-CHHHHHHHHHHHHHHHHHHHHT--------TCCEEETTTEEEEEEC
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHC--------CCeEEECCCEEEEEEE
Confidence 3467777778888888888888875 22355544 5555544
No 29
>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E
Probab=20.41 E-value=89 Score=27.80 Aligned_cols=54 Identities=13% Similarity=0.148 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCccCCCCcce-eecCceEEEEEC---CCcEEEEeC
Q 036786 84 EDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDV-DYGNEVLTLKLG---ALGTYVLNK 137 (158)
Q Consensus 84 e~eF~~lAd~~L~~L~e~lE~~~d~~~~~d~Dv-e~s~GVLTI~f~---d~gtyVINK 137 (158)
+.|||+.+.+.+++|...++...+-.+..-++. -.-.-++++.++ |.|++-+|+
T Consensus 24 ~~ef~qa~~e~~~~l~~~~~~~p~y~~~~~~e~l~~PeR~i~~~vp~~~D~G~~~v~~ 81 (450)
T 4fcc_A 24 QTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQVQVNR 81 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCGGGTSTTHHHHHTSCSEEEEEEEEEECTTSCEEEEE
T ss_pred ChHHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHhCCceEEEEEEEEEECCCcEEEEE
Confidence 679999999999999999987432110000111 113556777765 677777775
No 30
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=20.25 E-value=49 Score=23.85 Aligned_cols=20 Identities=5% Similarity=0.182 Sum_probs=14.2
Q ss_pred cceeecCceEEEEECCCcEE
Q 036786 114 FDVDYGNEVLTLKLGALGTY 133 (158)
Q Consensus 114 ~Dve~s~GVLTI~f~d~gty 133 (158)
++....+|.+++++...+.+
T Consensus 36 v~g~sggG~V~Vt~~G~~ev 55 (112)
T 1j8b_A 36 VTGESGAGLVKITINGAHNC 55 (112)
T ss_dssp EEEEEGGGTEEEEEETTCCE
T ss_pred EEEEECCCEEEEEEecCceE
Confidence 45556789999999765543
Done!