BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036787
(85 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 5/76 (6%)
Query: 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS-----GKSCRLRWMNYLRPDIKHGNYTK 66
+ KG W+KEED ++ ++ KYG W+ + K GK CR RW N+L P++K ++T+
Sbjct: 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 84
Query: 67 EEEDTIIKTRQQHGNK 82
EE+ I + ++ GN+
Sbjct: 85 EEDRIIYQAHKRLGNR 100
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 42 KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
++ C+ RW L P++ G +TKEE+ +I+ Q++G K
Sbjct: 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPK 48
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS-----GKSCRLRWMNYLRPDIKHGNYTK 66
+ KG W+KEED K+ + KYG W + K GK CR RW N+L P++K ++T+
Sbjct: 5 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTE 64
Query: 67 EEEDTIIKTRQQHGNK 82
EE+ I + + GN+
Sbjct: 65 EEDRIIFEAHKVLGNR 80
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition
Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition
Helices
Length = 105
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 14 KGAWSKEEDDKLGAYILKYGHWNWAQLPKS-----GKSCRLRWMNYLRPDIKHGNYTKEE 68
KG W+KEED ++ + KYG W+ + K GK CR RW N+L P++K ++T+EE
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 63
Query: 69 EDTIIKTRQQHGNK 82
+ I + ++ GN+
Sbjct: 64 DRIIYQAHKRLGNR 77
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS-----GKSCRLRWMNYLRPDIKHGNYTK 66
+ KG W+KEED ++ + KYG W+ + K GK CR RW N+L P++K ++T+
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 67 EEEDTIIKTRQQHGNK 82
EE+ I + ++ GN+
Sbjct: 62 EEDRIIYQAHKRLGNR 77
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 14 KGAWSKEEDDKLGAYILKYGHWNWAQLPKS-----GKSCRLRWMNYLRPDIKHGNYTKEE 68
KG W+KEED ++ + KYG W+ + K GK CR RW N+L P++K ++T+EE
Sbjct: 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 117
Query: 69 EDTIIKTRQQHGNK 82
+ I + ++ GN+
Sbjct: 118 DRIIYQAHKRLGNR 131
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTK 66
+ K W++EED+KL + + G +W + ++ C+ RW L P++ G +TK
Sbjct: 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTK 63
Query: 67 EEEDTIIKTRQQHGNK 82
EE+ +IK Q++G K
Sbjct: 64 EEDQRVIKLVQKYGPK 79
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 14 KGAWSKEEDDKLGAYILKYGHWNWAQ----LP-KSGKSCRLRWMNYLRPDIKHGNYTKEE 68
KG +++ EDD + Y+ + G NW + LP +S K CR RW N+L P + +T EE
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEE 61
Query: 69 EDTIIKTRQQHGNK 82
++TI + + G+K
Sbjct: 62 DETIFRNYLKLGSK 75
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas
Vaginalis Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas
Vaginalis Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas
Vaginalis Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas
Vaginalis Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 10 RGMKKGAWSKEEDDKLGAYILKYGHWNW----AQLP-KSGKSCRLRWMNYLRPDIKHGNY 64
+ KK ++ EED+ L + ++G +W A P ++ + CR RW NYL P I H +
Sbjct: 7 KAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPW 65
Query: 65 TKEEEDTIIKTRQQHGNK 82
T EE+ +++ Q++G +
Sbjct: 66 TAEEDALLVQKIQEYGRQ 83
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS-----GKSCRLRWMNYLRPD 58
+ KG W+KEED +L + KYG W+ + K GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS-----GKSCRLRWMNYLRPD 58
+ KG W+KEED ++ + KYG W+ + K GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS-----GKSCRLRWMNYLRPD 58
+ KG W+KEED ++ + KYG W+ + K GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In
Complex With Mre-1MRE-2r Dna
Length = 107
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 14 KGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEE 68
K +++EED KL +++YG +W ++ ++ + CR RW NY+ P ++ ++ EE
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60
Query: 69 EDTIIKTRQQHG---NKIMK 85
+ + + ++G NKI K
Sbjct: 61 DMLLDQKYAEYGPKWNKISK 80
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 16 AWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYT 65
W ED+ L A ++KYG W+++ KS K C+ RW +L P IK ++
Sbjct: 11 VWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 32.0 bits (71), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 17 WSKEEDDKLGAYILKYGHWNWAQL 40
W+KEED+KL + KYG+ +W Q+
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQI 194
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 17 WSKEEDDKLGAYILKYGHWNWAQL 40
W+KEED+KL + KYG+ +W Q+
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQI 195
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 17 WSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYL 55
W+ EED++L A + ++G +W L ++ + C+ RW+ L
Sbjct: 11 WTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 54
>pdb|1IV6|A Chain A, Solution Structure Of The Dna Complex Of Human Trf1
Length = 70
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 5 PPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQL 40
P R K+ AW EED L + + KYG NW+++
Sbjct: 2 TPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKI 37
>pdb|1ITY|A Chain A, Solution Structure Of The Dna Binding Domain Of Human
Trf1
Length = 69
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 5 PPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQL 40
P R K+ AW EED L + + KYG NW+++
Sbjct: 1 TPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKI 36
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPD 58
+ K W++EED+KL + + G +W + ++ C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPD 58
+ K W++EED+KL + + G +W + ++ C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|3SM5|H Chain H, Influenza Hemagglutinin In Complex With A Neutralizing
Antibody
pdb|3SM5|I Chain I, Influenza Hemagglutinin In Complex With A Neutralizing
Antibody
pdb|3SM5|J Chain J, Influenza Hemagglutinin In Complex With A Neutralizing
Antibody
Length = 227
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 8 DGRGMKKGAWSKEEDDKLGAYILKYGHWNWA-QLPKSGKSCRLRWMNYLRPDIKHGNYTK 66
G +KK S + K Y H NW Q P G L WM ++ P+ NY +
Sbjct: 7 SGAEVKKPGASVKVSCKASGYTFTDYHINWVRQAPGQG----LEWMGWIHPNSGDTNYAQ 62
Query: 67 EEEDTIIKTR 76
+ + + TR
Sbjct: 63 KFQGWVTMTR 72
>pdb|1IGY|B Chain B, Structure Of Immunoglobulin
pdb|1IGY|D Chain D, Structure Of Immunoglobulin
Length = 434
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 34 HWNWAQLPKSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGN 81
HW Q P G L W+ Y+ P + NY + +D TR + N
Sbjct: 34 HW-IKQRPGQG----LEWIGYINPSSVYTNYNQRFKDKATLTRDRSSN 76
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 13 KKGAWSKEEDDKLGAYILKYGHWNWAQLPKS 43
KK W+ EE + + A + KYG NWA + K+
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKN 40
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 13 KKGAWSKEEDDKLGAYILKYGHWNWAQLPKS 43
KK W+ EE + + A + KYG NWA + K+
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKN 40
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 13 KKGAWSKEEDDKLGAYILKYGHWNWAQLPKS 43
KK W+ EE + + A + KYG NWA + K+
Sbjct: 9 KKQKWTVEESEWVKAGVQKYGEGNWAAISKN 39
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 13 KKGAWSKEEDDKLGAYILKYGHWNWAQLPKS 43
KK W+ EE + + A + KYG NWA + K+
Sbjct: 13 KKQKWTVEESEWVKAGVQKYGEGNWAAISKN 43
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 13 KKGAWSKEEDDKLGAYILKYGHWNWAQLPKS 43
KK W+ EE + + A + KYG NWA + K+
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKN 31
>pdb|1UZ6|F Chain F, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|H Chain H, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|P Chain P, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|W Chain W, Anti-Lewis X Fab Fragment Uncomplexed
Length = 217
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 33 GHW-NWA-QLPKSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKI 83
G+W +W Q P G L W+ + PD NYT +D I +R N +
Sbjct: 31 GYWMSWVRQAPGKG----LEWIGEINPDSSTINYTPSLKDKFIISRDNAKNTL 79
>pdb|1UZ8|B Chain B, Anti-Lewis X Fab Fragment In Complex With Lewis X
pdb|1UZ8|H Chain H, Anti-Lewis X Fab Fragment In Complex With Lewis X
Length = 212
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 33 GHW-NWA-QLPKSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKI 83
G+W +W Q P G L W+ + PD NYT +D I +R N +
Sbjct: 31 GYWMSWVRQAPGKG----LEWIGEINPDSSTINYTPSLKDKFIISRDNAKNTL 79
>pdb|3U0W|H Chain H, Ad Related Murine Antibody Fragment
Length = 216
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 36 NWA-QLPKSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKI 83
NW Q P G L W+ + PD NYT +D I +R N +
Sbjct: 35 NWVRQAPGKG----LEWIGEINPDSSTINYTPSLKDKFIISRDNAKNTL 79
>pdb|3LIB|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z3
pdb|3LIB|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z3
pdb|3LIB|C Chain C, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z3
pdb|3LIB|D Chain D, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z3
pdb|3LIB|E Chain E, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z3
pdb|3LIB|F Chain F, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z3
pdb|3LIB|G Chain G, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z3
pdb|3LIB|H Chain H, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z3
pdb|3LIB|I Chain I, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z3
pdb|3LIB|J Chain J, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z3
Length = 290
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 4 APPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPKSGKSCRLR---------WMNY 54
+P +DG G W+K A +L Y ++ QLPK+ + L ++Y
Sbjct: 93 SPAHDGTGRFVPYWNKMNGTASVAPLLHYDSSDYYQLPKATEKDVLTEPYFYEGVFMVSY 152
Query: 55 LRPDIKHGNY 64
+ P +K G +
Sbjct: 153 VSPIMKEGEF 162
>pdb|3N5F|A Chain A, Crystal Structure Of L-N-Carbamoylase From Geobacillus
Stearothermophilus Cect43
pdb|3N5F|B Chain B, Crystal Structure Of L-N-Carbamoylase From Geobacillus
Stearothermophilus Cect43
Length = 408
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 1 MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQ 39
M+ DG WS +ED GA +L + W AQ
Sbjct: 369 MIFVRSQDGVSHSPAEWSTKEDCAAGAEVLYHTVWQLAQ 407
>pdb|1BA5|A Chain A, Dna-Binding Domain Of Human Telomeric Protein, Htrf1,
Nmr, 18 Structures
Length = 53
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 13 KKGAWSKEEDDKLGAYILKYGHWNWAQL 40
K+ AW EED L + + KYG NW+++
Sbjct: 2 KRQAWLWEEDKNLRSGVRKYGEGNWSKI 29
>pdb|1W0T|A Chain A, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0T|B Chain B, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna
Length = 53
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 13 KKGAWSKEEDDKLGAYILKYGHWNWAQL 40
K+ AW EED L + + KYG NW+++
Sbjct: 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKI 28
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,261,684
Number of Sequences: 62578
Number of extensions: 130568
Number of successful extensions: 293
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 45
length of query: 85
length of database: 14,973,337
effective HSP length: 53
effective length of query: 32
effective length of database: 11,656,703
effective search space: 373014496
effective search space used: 373014496
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)