Query 036787
Match_columns 85
No_of_seqs 126 out of 1090
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 08:49:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h8a_C AMV V-MYB, MYB transfor 100.0 3.6E-30 1.2E-34 161.5 7.3 82 3-84 16-102 (128)
2 1gv2_A C-MYB, MYB proto-oncoge 100.0 5.1E-30 1.7E-34 155.9 7.0 74 11-84 1-79 (105)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 4.8E-30 1.7E-34 156.9 6.3 71 14-84 1-76 (107)
4 3zqc_A MYB3; transcription-DNA 100.0 2.3E-29 7.8E-34 158.6 7.9 72 13-84 1-77 (131)
5 3osg_A MYB21; transcription-DN 100.0 1.9E-29 6.6E-34 158.1 6.8 76 8-84 5-85 (126)
6 1h89_C C-MYB, MYB proto-oncoge 99.9 6.1E-28 2.1E-32 156.0 5.9 79 6-84 50-133 (159)
7 2dim_A Cell division cycle 5-l 99.9 1.1E-26 3.7E-31 132.7 3.8 62 8-69 3-69 (70)
8 1h89_C C-MYB, MYB proto-oncoge 99.9 1E-26 3.5E-31 150.2 3.1 74 11-84 3-82 (159)
9 2juh_A Telomere binding protei 99.9 4E-23 1.4E-27 128.8 5.9 78 8-85 11-103 (121)
10 2roh_A RTBP1, telomere binding 99.8 4.1E-21 1.4E-25 119.8 7.6 76 9-84 26-116 (122)
11 2d9a_A B-MYB, MYB-related prot 99.8 5.5E-21 1.9E-25 105.9 5.4 52 9-60 3-59 (60)
12 1gvd_A MYB proto-oncogene prot 99.8 1.5E-20 5.1E-25 101.5 4.7 47 12-58 1-52 (52)
13 1guu_A C-MYB, MYB proto-oncoge 99.8 2.9E-20 9.9E-25 100.3 4.4 47 12-58 1-52 (52)
14 1ity_A TRF1; helix-turn-helix, 99.8 4.9E-20 1.7E-24 104.7 5.0 58 8-65 4-68 (69)
15 3sjm_A Telomeric repeat-bindin 99.8 8.3E-20 2.8E-24 102.7 4.4 50 11-60 8-64 (64)
16 2din_A Cell division cycle 5-l 99.8 7.7E-20 2.6E-24 103.0 3.0 56 7-63 2-61 (66)
17 1x41_A Transcriptional adaptor 99.8 1E-18 3.6E-23 96.8 5.4 50 9-58 3-57 (60)
18 1w0t_A Telomeric repeat bindin 99.7 4.8E-18 1.7E-22 91.9 4.2 44 13-56 1-51 (53)
19 2yum_A ZZZ3 protein, zinc fing 99.7 7.2E-18 2.5E-22 96.9 3.9 55 9-63 3-67 (75)
20 2elk_A SPCC24B10.08C protein; 99.7 2.1E-17 7.2E-22 91.0 5.0 46 10-55 5-56 (58)
21 2cu7_A KIAA1915 protein; nucle 99.7 1.2E-17 4.3E-22 95.4 4.2 54 7-61 2-60 (72)
22 2aje_A Telomere repeat-binding 99.7 3.1E-17 1E-21 100.0 5.2 75 7-81 6-95 (105)
23 2llk_A Cyclin-D-binding MYB-li 99.7 3.5E-17 1.2E-21 94.0 5.0 56 3-60 12-71 (73)
24 2ckx_A NGTRF1, telomere bindin 99.7 3.3E-16 1.1E-20 91.9 6.8 64 15-78 1-79 (83)
25 3zqc_A MYB3; transcription-DNA 99.6 7.1E-17 2.4E-21 101.3 4.0 60 7-67 47-111 (131)
26 1ign_A Protein (RAP1); RAP1,ye 99.6 5.5E-16 1.9E-20 105.7 6.3 70 9-78 3-111 (246)
27 1gv2_A C-MYB, MYB proto-oncoge 99.5 4.9E-15 1.7E-19 89.5 5.0 50 7-57 49-103 (105)
28 2ltp_A Nuclear receptor corepr 99.3 5.6E-16 1.9E-20 91.9 0.0 52 5-57 7-63 (89)
29 2yus_A SWI/SNF-related matrix- 99.5 8.6E-15 3E-19 85.1 4.9 46 8-54 12-62 (79)
30 2k9n_A MYB24; R2R3 domain, DNA 99.5 1.9E-14 6.5E-19 87.4 4.6 50 7-57 46-100 (107)
31 1h8a_C AMV V-MYB, MYB transfor 99.5 2.9E-14 1E-18 88.9 5.1 50 7-57 72-126 (128)
32 3osg_A MYB21; transcription-DN 99.5 3.2E-14 1.1E-18 88.7 4.4 49 7-56 55-108 (126)
33 2cqr_A RSGI RUH-043, DNAJ homo 99.5 4.3E-14 1.5E-18 81.1 3.9 52 5-56 9-68 (73)
34 2llk_A Cyclin-D-binding MYB-li 99.4 1.2E-13 4.3E-18 79.1 2.2 37 48-84 10-46 (73)
35 2cjj_A Radialis; plant develop 99.2 1.4E-11 5E-16 73.4 3.4 43 13-55 7-57 (93)
36 1x58_A Hypothetical protein 49 99.1 5E-11 1.7E-15 66.1 4.0 44 12-56 6-57 (62)
37 2din_A Cell division cycle 5-l 99.0 8E-11 2.8E-15 65.7 2.0 32 53-84 1-32 (66)
38 2eqr_A N-COR1, N-COR, nuclear 99.0 1E-09 3.5E-14 60.5 5.0 48 7-55 5-57 (61)
39 2cqq_A RSGI RUH-037, DNAJ homo 98.8 3E-09 1E-13 60.6 3.9 48 10-57 4-58 (72)
40 2cu7_A KIAA1915 protein; nucle 98.8 1.6E-09 5.6E-14 61.4 2.4 30 55-84 3-32 (72)
41 2d9a_A B-MYB, MYB-related prot 98.8 2.8E-09 9.6E-14 58.3 2.4 29 56-84 3-32 (60)
42 1fex_A TRF2-interacting telome 98.7 4.7E-09 1.6E-13 57.6 2.3 43 14-56 2-58 (59)
43 1guu_A C-MYB, MYB proto-oncoge 98.7 8.4E-09 2.9E-13 54.8 1.9 26 59-84 1-27 (52)
44 1x41_A Transcriptional adaptor 98.7 1E-08 3.5E-13 56.2 2.3 29 56-84 3-32 (60)
45 1w0t_A Telomeric repeat bindin 98.6 1E-08 3.5E-13 54.8 2.0 25 60-84 1-26 (53)
46 1ity_A TRF1; helix-turn-helix, 98.6 1.4E-08 4.9E-13 56.9 2.5 31 54-84 3-34 (69)
47 1gvd_A MYB proto-oncogene prot 98.6 1.5E-08 5E-13 53.9 2.1 26 59-84 1-27 (52)
48 2dim_A Cell division cycle 5-l 98.6 1.9E-08 6.5E-13 56.5 2.4 29 56-84 4-33 (70)
49 2ltp_A Nuclear receptor corepr 98.0 6.4E-09 2.2E-13 61.2 0.0 33 53-85 8-40 (89)
50 2iw5_B Protein corest, REST co 98.6 6.3E-08 2.2E-12 65.6 4.8 44 12-56 131-179 (235)
51 2elk_A SPCC24B10.08C protein; 98.5 1.1E-07 3.6E-12 51.8 3.5 29 56-84 4-33 (58)
52 3sjm_A Telomeric repeat-bindin 98.5 5E-08 1.7E-12 54.2 2.0 26 59-84 9-35 (64)
53 1x58_A Hypothetical protein 49 98.4 8.2E-08 2.8E-12 53.1 1.9 26 59-84 6-31 (62)
54 1wgx_A KIAA1903 protein; MYB D 98.3 3.4E-07 1.2E-11 52.2 3.3 43 14-56 8-58 (73)
55 2yum_A ZZZ3 protein, zinc fing 98.3 9.1E-08 3.1E-12 54.3 0.8 29 56-84 3-37 (75)
56 2yus_A SWI/SNF-related matrix- 98.2 1.1E-06 3.8E-11 50.6 3.3 27 58-84 15-41 (79)
57 2juh_A Telomere binding protei 98.2 5.4E-07 1.8E-11 55.9 1.9 30 55-84 11-41 (121)
58 3hm5_A DNA methyltransferase 1 98.2 1.1E-06 3.7E-11 52.2 3.0 38 43-84 16-53 (93)
59 2aje_A Telomere repeat-binding 98.2 7.6E-07 2.6E-11 53.9 2.3 29 56-84 8-37 (105)
60 3hm5_A DNA methyltransferase 1 98.1 2.4E-06 8.1E-11 50.7 3.9 44 12-56 28-81 (93)
61 2roh_A RTBP1, telomere binding 98.0 2.3E-06 7.9E-11 53.1 2.4 28 57-84 27-55 (122)
62 2yqk_A Arginine-glutamic acid 97.8 3.3E-05 1.1E-09 42.5 4.8 46 8-54 3-54 (63)
63 2cqr_A RSGI RUH-043, DNAJ homo 97.8 3.4E-06 1.2E-10 47.9 0.8 28 57-84 14-45 (73)
64 2xag_B REST corepressor 1; ami 97.8 2E-05 6.7E-10 58.4 4.8 43 12-55 378-425 (482)
65 2ebi_A DNA binding protein GT- 97.7 1.1E-05 3.6E-10 46.7 1.8 43 13-55 3-63 (86)
66 4eef_G F-HB80.4, designed hema 97.5 2.6E-05 8.9E-10 44.3 1.5 40 13-52 19-66 (74)
67 2lr8_A CAsp8-associated protei 96.6 1.5E-05 5.3E-10 44.6 0.0 43 14-56 14-62 (70)
68 1ug2_A 2610100B20RIK gene prod 97.4 0.00013 4.6E-09 43.0 3.7 41 15-55 34-81 (95)
69 2eqr_A N-COR1, N-COR, nuclear 97.4 9.9E-05 3.4E-09 40.2 2.8 25 60-84 11-35 (61)
70 1ign_A Protein (RAP1); RAP1,ye 97.3 5.4E-05 1.8E-09 51.7 0.5 26 57-82 4-29 (246)
71 1ofc_X ISWI protein; nuclear p 97.2 0.0014 4.7E-08 46.1 7.2 27 15-41 111-137 (304)
72 4a69_C Nuclear receptor corepr 97.2 0.00035 1.2E-08 41.2 3.6 39 14-53 43-86 (94)
73 4iej_A DNA methyltransferase 1 97.1 0.0005 1.7E-08 40.6 3.9 44 12-56 28-81 (93)
74 2cjj_A Radialis; plant develop 97.1 0.00013 4.4E-09 43.1 1.0 25 60-84 7-35 (93)
75 2crg_A Metastasis associated p 97.0 0.00074 2.5E-08 37.7 3.8 40 13-53 7-52 (70)
76 4b4c_A Chromodomain-helicase-D 97.0 0.0008 2.7E-08 44.2 4.3 33 9-41 129-161 (211)
77 4b4c_A Chromodomain-helicase-D 96.8 0.0027 9.2E-08 41.6 5.5 31 11-41 4-36 (211)
78 2cqq_A RSGI RUH-037, DNAJ homo 96.7 0.0012 4.2E-08 37.1 2.6 27 58-84 5-35 (72)
79 1fex_A TRF2-interacting telome 96.5 0.0024 8.1E-08 34.5 3.1 19 61-79 2-20 (59)
80 2xb0_X Chromo domain-containin 96.3 0.0044 1.5E-07 42.8 4.2 28 14-41 168-195 (270)
81 2yqk_A Arginine-glutamic acid 96.0 0.0069 2.4E-07 33.0 3.3 28 57-84 5-32 (63)
82 2iw5_B Protein corest, REST co 96.0 0.0041 1.4E-07 42.1 2.8 24 61-84 133-156 (235)
83 4iej_A DNA methyltransferase 1 95.9 0.0084 2.9E-07 35.3 3.4 31 49-83 22-52 (93)
84 1ofc_X ISWI protein; nuclear p 94.1 0.045 1.5E-06 38.4 3.6 43 13-55 211-273 (304)
85 2crg_A Metastasis associated p 92.5 0.1 3.5E-06 28.8 2.8 24 60-83 7-30 (70)
86 1wgx_A KIAA1903 protein; MYB D 90.9 0.3 1E-05 27.3 3.5 21 61-81 8-28 (73)
87 4a69_C Nuclear receptor corepr 90.6 0.19 6.5E-06 29.3 2.6 24 61-84 43-66 (94)
88 1irz_A ARR10-B; helix-turn-hel 90.6 0.56 1.9E-05 25.6 4.3 24 10-33 3-26 (64)
89 2y9y_A Imitation switch protei 89.8 0.55 1.9E-05 33.8 5.0 43 13-55 227-289 (374)
90 2xag_B REST corepressor 1; ami 89.1 0.28 9.4E-06 36.4 3.0 24 61-84 380-403 (482)
91 4eef_G F-HB80.4, designed hema 86.9 0.18 6.1E-06 28.4 0.7 24 61-84 20-47 (74)
92 2lr8_A CAsp8-associated protei 86.5 0.13 4.5E-06 28.6 0.0 20 62-81 15-34 (70)
93 2y9y_A Imitation switch protei 85.5 2.2 7.6E-05 30.7 5.9 22 60-81 227-248 (374)
94 1ug2_A 2610100B20RIK gene prod 85.2 0.72 2.5E-05 27.0 2.7 20 62-81 34-53 (95)
95 2xb0_X Chromo domain-containin 83.0 0.82 2.8E-05 31.4 2.7 21 63-83 170-191 (270)
96 2rq5_A Protein jumonji; develo 80.8 0.68 2.3E-05 28.1 1.5 40 35-77 64-113 (121)
97 3cz6_A DNA-binding protein RAP 78.5 1.7 5.9E-05 27.9 2.9 24 10-33 110-141 (168)
98 1irz_A ARR10-B; helix-turn-hel 78.3 4.5 0.00015 21.9 4.2 25 59-83 5-29 (64)
99 2li6_A SWI/SNF chromatin-remod 60.6 3.7 0.00013 24.4 1.4 34 24-57 53-98 (116)
100 2xsa_A Ogoga, hyaluronoglucosa 60.0 13 0.00044 27.3 4.4 21 15-35 12-32 (447)
101 1ig6_A MRF-2, modulator recogn 58.5 3.5 0.00012 24.0 1.0 34 24-57 37-87 (107)
102 2eqy_A RBP2 like, jumonji, at 56.4 3.8 0.00013 24.6 0.9 34 24-57 46-95 (122)
103 2cxy_A BAF250B subunit, HBAF25 55.7 4 0.00014 24.5 1.0 34 24-57 55-104 (125)
104 2kk0_A AT-rich interactive dom 54.4 12 0.00041 23.0 3.1 51 24-74 68-137 (145)
105 1c20_A DEAD ringer protein; DN 53.1 4.7 0.00016 24.2 1.0 34 24-57 56-106 (128)
106 2jxj_A Histone demethylase jar 52.1 2.9 0.0001 23.8 -0.1 21 36-56 59-88 (96)
107 3i4p_A Transcriptional regulat 51.6 10 0.00034 23.2 2.4 39 20-58 3-45 (162)
108 2jrz_A Histone demethylase jar 50.6 5.5 0.00019 23.6 1.0 34 24-57 44-93 (117)
109 2k0m_A Uncharacterized protein 49.8 16 0.00054 21.5 2.9 37 43-79 16-52 (104)
110 2lm1_A Lysine-specific demethy 48.4 6.2 0.00021 22.8 1.0 34 24-57 48-97 (107)
111 3h8k_B Autocrine motility fact 44.1 16 0.00056 16.5 1.9 10 17-26 1-10 (28)
112 1kkx_A Transcription regulator 39.2 5.9 0.0002 23.8 -0.1 22 36-57 71-97 (123)
113 2p1m_A SKP1-like protein 1A; F 34.8 48 0.0016 20.3 3.6 26 42-74 128-153 (160)
114 2e1c_A Putative HTH-type trans 30.0 54 0.0018 20.1 3.3 40 19-58 26-69 (171)
115 2dll_A Interferon regulatory f 29.6 93 0.0032 18.6 4.2 44 13-57 43-88 (121)
116 2ba3_A NIKA; dimer, bacterial 28.7 53 0.0018 15.9 2.6 19 63-81 21-39 (51)
117 3s1b_A Mini-Z; VEGF, cystine k 28.1 48 0.0016 15.1 2.0 16 45-60 3-19 (34)
118 3lqv_P Splicing factor 3B subu 27.9 38 0.0013 16.4 1.8 28 44-73 4-32 (39)
119 3v7d_A Suppressor of kinetocho 24.5 79 0.0027 19.6 3.3 31 42-84 136-166 (169)
120 2rr9_C Putative uncharacterize 24.3 64 0.0022 15.9 2.2 14 19-32 26-39 (46)
121 3r8n_M 30S ribosomal protein S 24.1 52 0.0018 19.5 2.3 26 54-79 37-62 (114)
122 4glq_A Methyl-accepting chemot 22.8 55 0.0019 19.8 2.3 20 61-80 130-149 (171)
123 3a1q_C Ubiquitin interaction m 22.4 73 0.0025 15.6 2.2 13 19-31 29-41 (45)
124 2dbb_A Putative HTH-type trans 22.2 59 0.002 19.1 2.3 36 20-55 9-48 (151)
125 2ast_A S-phase kinase-associat 21.6 67 0.0023 19.5 2.5 26 42-74 129-154 (159)
No 1
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.96 E-value=3.6e-30 Score=161.55 Aligned_cols=82 Identities=34% Similarity=0.693 Sum_probs=73.9
Q ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 036787 3 RAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQ 77 (85)
Q Consensus 3 r~~~~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~ 77 (85)
|+..+.+|.+++|+||+|||++|+.+|..||.++|..|| ||+.||++||.++|+|.+++++||+|||.+|++++.
T Consensus 16 Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~ 95 (128)
T 1h8a_C 16 RWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK 95 (128)
T ss_dssp ------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHH
Confidence 455667899999999999999999999999987899998 799999999999999999999999999999999999
Q ss_pred HhCCCCC
Q 036787 78 QHGNKIM 84 (85)
Q Consensus 78 ~~g~~W~ 84 (85)
+||++|+
T Consensus 96 ~~G~~W~ 102 (128)
T 1h8a_C 96 RLGNRWA 102 (128)
T ss_dssp HHCSCHH
T ss_pred HHCcCHH
Confidence 9999995
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.96 E-value=5.1e-30 Score=155.95 Aligned_cols=74 Identities=36% Similarity=0.776 Sum_probs=71.1
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787 11 GMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKIM 84 (85)
Q Consensus 11 ~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~W~ 84 (85)
.+++|+||+|||++|+.+|..||.++|..|| ||+.||++||.++|+|.+++++||++||.+|++++.+||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 3789999999999999999999987999998 6999999999999999999999999999999999999999995
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.96 E-value=4.8e-30 Score=156.86 Aligned_cols=71 Identities=28% Similarity=0.628 Sum_probs=68.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787 14 KGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKIM 84 (85)
Q Consensus 14 kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~W~ 84 (85)
||+||+|||++|+.+|..||.++|..|| ||+.||++||.++|+|.+++++||++||.+|+++|.+||++|+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~ 76 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWN 76 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHH
Confidence 6899999999999999999988999998 7999999999999999999999999999999999999999995
No 4
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.96 E-value=2.3e-29 Score=158.56 Aligned_cols=72 Identities=35% Similarity=0.687 Sum_probs=69.6
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787 13 KKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKIM 84 (85)
Q Consensus 13 ~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~W~ 84 (85)
.||+||+|||++|+.+|..||.++|..|| ||+.||++||.++|+|.+++++||++||.+|+++|.+||++|+
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 77 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWS 77 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHH
Confidence 37999999999999999999988999999 6999999999999999999999999999999999999999995
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.96 E-value=1.9e-29 Score=158.09 Aligned_cols=76 Identities=30% Similarity=0.634 Sum_probs=72.0
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 036787 8 DGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNK 82 (85)
Q Consensus 8 ~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~ 82 (85)
.++..++|+||+|||++|+.+|..||. +|..|| |++.||++||.++|+|.+++++||++||.+|+++|.+||++
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~ 83 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ 83 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence 356789999999999999999999996 999999 79999999999999999999999999999999999999999
Q ss_pred CC
Q 036787 83 IM 84 (85)
Q Consensus 83 W~ 84 (85)
|+
T Consensus 84 W~ 85 (126)
T 3osg_A 84 WA 85 (126)
T ss_dssp HH
T ss_pred HH
Confidence 95
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.94 E-value=6.1e-28 Score=155.97 Aligned_cols=79 Identities=34% Similarity=0.701 Sum_probs=75.4
Q ss_pred CCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhC
Q 036787 6 PYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHG 80 (85)
Q Consensus 6 ~~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g 80 (85)
.+.+|.+++|+||+|||++|+.+|..||.++|..|| ||+.||++||.++|+|.+++++||++||.+|++++.+||
T Consensus 50 ~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g 129 (159)
T 1h89_C 50 KVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 129 (159)
T ss_dssp TTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred HccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence 357889999999999999999999999977899998 799999999999999999999999999999999999999
Q ss_pred CCCC
Q 036787 81 NKIM 84 (85)
Q Consensus 81 ~~W~ 84 (85)
++|+
T Consensus 130 ~~W~ 133 (159)
T 1h89_C 130 NRWA 133 (159)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 9995
No 7
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=1.1e-26 Score=132.66 Aligned_cols=62 Identities=35% Similarity=0.807 Sum_probs=59.2
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHHHH
Q 036787 8 DGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEE 69 (85)
Q Consensus 8 ~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~eEd 69 (85)
..|.+++|+||+|||++|+.+|..||.++|..|| ||+.||++||.++|+|.+++++||++||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999988999999 7999999999999999999999999997
No 8
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.92 E-value=1e-26 Score=150.21 Aligned_cols=74 Identities=31% Similarity=0.664 Sum_probs=37.5
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCC-CCC
Q 036787 11 GMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGN-KIM 84 (85)
Q Consensus 11 ~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~-~W~ 84 (85)
++++++||+|||++|+.+|..||.++|..|| |++.||++||.++|+|.+++++||++||.+|+++|..||+ +|+
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 3789999999999999999999988999999 6999999999999999999999999999999999999996 585
No 9
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.88 E-value=4e-23 Score=128.79 Aligned_cols=78 Identities=13% Similarity=0.244 Sum_probs=73.2
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc---------cchhHHHHHHhhhhc-----CCCCCC-CCCHHHHHHH
Q 036787 8 DGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP---------KSGKSCRLRWMNYLR-----PDIKHG-NYTKEEEDTI 72 (85)
Q Consensus 8 ~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia---------r~~~qcr~rw~~~L~-----~~~~~~-~wt~eEd~~L 72 (85)
.++..++++||+|||+.|+.+|++||.++|+.|+ ||+.||++||+++|. |.++++ +|+++|+.+|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 4578899999999999999999999988999986 699999999999998 999998 9999999999
Q ss_pred HHHHHHhCCCCCC
Q 036787 73 IKTRQQHGNKIMK 85 (85)
Q Consensus 73 ~~~~~~~g~~W~k 85 (85)
+.++..+||+|+|
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999986
No 10
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.84 E-value=4.1e-21 Score=119.84 Aligned_cols=76 Identities=13% Similarity=0.269 Sum_probs=69.8
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc---------cchhHHHHHHhhhh-----cCCCCCCCCCHHH-HHHHH
Q 036787 9 GRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP---------KSGKSCRLRWMNYL-----RPDIKHGNYTKEE-EDTII 73 (85)
Q Consensus 9 ~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia---------r~~~qcr~rw~~~L-----~~~~~~~~wt~eE-d~~L~ 73 (85)
+...++++||+|||+.|+.+|++||.++|..|+ ||+.||++||+|++ +|.++++.|+++| +.+|+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 345679999999999999999999988999986 79999999999999 8999999999999 89999
Q ss_pred HHHHHhCCCCC
Q 036787 74 KTRQQHGNKIM 84 (85)
Q Consensus 74 ~~~~~~g~~W~ 84 (85)
.++..+||+=+
T Consensus 106 ~~h~~~g~~~~ 116 (122)
T 2roh_A 106 AAQAYWSVDSS 116 (122)
T ss_dssp HHHHHHHSSCS
T ss_pred HHHHHHhhHHh
Confidence 99999999743
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=5.5e-21 Score=105.89 Aligned_cols=52 Identities=27% Similarity=0.671 Sum_probs=49.0
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCC
Q 036787 9 GRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIK 60 (85)
Q Consensus 9 ~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~ 60 (85)
+|.+++++||+|||++|+++|..||.++|..|| ||+.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 578999999999999999999999977999998 7999999999999999875
No 12
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.81 E-value=1.5e-20 Score=101.46 Aligned_cols=47 Identities=45% Similarity=0.950 Sum_probs=44.2
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCC
Q 036787 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPD 58 (85)
Q Consensus 12 ~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~ 58 (85)
+++|+||+|||++|+++|..||..+|..|| ||+.||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 579999999999999999999977899998 69999999999999984
No 13
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.80 E-value=2.9e-20 Score=100.25 Aligned_cols=47 Identities=30% Similarity=0.760 Sum_probs=42.9
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCC
Q 036787 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPD 58 (85)
Q Consensus 12 ~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~ 58 (85)
+++|+||+|||++|+.+|..||.++|..|| ||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 578999999999999999999977999998 69999999999999984
No 14
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.80 E-value=4.9e-20 Score=104.67 Aligned_cols=58 Identities=26% Similarity=0.483 Sum_probs=53.0
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-------cchhHHHHHHhhhhcCCCCCCCCC
Q 036787 8 DGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-------KSGKSCRLRWMNYLRPDIKHGNYT 65 (85)
Q Consensus 8 ~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-------r~~~qcr~rw~~~L~~~~~~~~wt 65 (85)
.++..++++||+|||++|+.+|..||.++|..|| ||+.||++||.++|+|.+.+++.+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 4577899999999999999999999988999987 799999999999999999987654
No 15
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.79 E-value=8.3e-20 Score=102.65 Aligned_cols=50 Identities=30% Similarity=0.529 Sum_probs=45.2
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccc-------cchhHHHHHHhhhhcCCCC
Q 036787 11 GMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-------KSGKSCRLRWMNYLRPDIK 60 (85)
Q Consensus 11 ~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-------r~~~qcr~rw~~~L~~~~~ 60 (85)
..++++||+|||++|+.+|.+||.++|..|| ||+.||++||.+++.|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 4578999999999999999999988999997 6999999999999998874
No 16
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=7.7e-20 Score=103.00 Aligned_cols=56 Identities=21% Similarity=0.399 Sum_probs=51.4
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc----cchhHHHHHHhhhhcCCCCCCC
Q 036787 7 YDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP----KSGKSCRLRWMNYLRPDIKHGN 63 (85)
Q Consensus 7 ~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia----r~~~qcr~rw~~~L~~~~~~~~ 63 (85)
+++|.+++++||+|||++|+.++..+|. +|..|| ||+.||++||.++|+|.+++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAPIIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHHHHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhcccCcCHHHHHHHHHHHhChHhcCCC
Confidence 5789999999999999999999999995 999998 7999999999999998776653
No 17
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=1e-18 Score=96.81 Aligned_cols=50 Identities=20% Similarity=0.506 Sum_probs=46.5
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCC
Q 036787 9 GRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPD 58 (85)
Q Consensus 9 ~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~ 58 (85)
.+.+.+++||+|||++|+++|..||.++|..|| ||+.||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 467999999999999999999999988999999 79999999999999764
No 18
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.72 E-value=4.8e-18 Score=91.91 Aligned_cols=44 Identities=32% Similarity=0.622 Sum_probs=41.1
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCccccc-------cchhHHHHHHhhhhc
Q 036787 13 KKGAWSKEEDDKLGAYILKYGHWNWAQLP-------KSGKSCRLRWMNYLR 56 (85)
Q Consensus 13 ~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-------r~~~qcr~rw~~~L~ 56 (85)
++|+||+|||++|+.+|..||.++|..|| ||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 57999999999999999999988999996 799999999999985
No 19
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.2e-18 Score=96.91 Aligned_cols=55 Identities=22% Similarity=0.416 Sum_probs=50.1
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCC-----CCccccc-----cchhHHHHHHhhhhcCCCCCCC
Q 036787 9 GRGMKKGAWSKEEDDKLGAYILKYGH-----WNWAQLP-----KSGKSCRLRWMNYLRPDIKHGN 63 (85)
Q Consensus 9 ~~~~~kg~Wt~eED~~L~~~v~~~g~-----~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~ 63 (85)
+|.+.+++||+|||++|+++|..||. ++|..|| ||+.||++||+++|.+.++.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 67899999999999999999999996 6899999 7999999999999998776653
No 20
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.70 E-value=2.1e-17 Score=91.00 Aligned_cols=46 Identities=20% Similarity=0.373 Sum_probs=42.2
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCCccccc------cchhHHHHHHhhhh
Q 036787 10 RGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP------KSGKSCRLRWMNYL 55 (85)
Q Consensus 10 ~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia------r~~~qcr~rw~~~L 55 (85)
..+.+++||+|||++|+++|..||.++|..|| ||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999999988999998 69999999999975
No 21
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.70 E-value=1.2e-17 Score=95.40 Aligned_cols=54 Identities=17% Similarity=0.386 Sum_probs=49.0
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCC
Q 036787 7 YDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKH 61 (85)
Q Consensus 7 ~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~ 61 (85)
+.+|.+++++||+|||++|+.+|..||. +|..|| ||+.||++||.++|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999995 999999 79999999999999876554
No 22
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.68 E-value=3.1e-17 Score=100.04 Aligned_cols=75 Identities=15% Similarity=0.254 Sum_probs=64.0
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc---------cchhHHHHHHhhhh-----cCCCCCCCCCHHHHHH-
Q 036787 7 YDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP---------KSGKSCRLRWMNYL-----RPDIKHGNYTKEEEDT- 71 (85)
Q Consensus 7 ~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia---------r~~~qcr~rw~~~L-----~~~~~~~~wt~eEd~~- 71 (85)
..+...++++||+|||+.|+.+|++||.++|..|+ ||+.+|++||++++ +|.++++.-+++|-..
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 35678899999999999999999999988999986 69999999999999 7899998888777665
Q ss_pred HHHHHHHhCC
Q 036787 72 IIKTRQQHGN 81 (85)
Q Consensus 72 L~~~~~~~g~ 81 (85)
+++++..+|+
T Consensus 86 v~~~~~~~~~ 95 (105)
T 2aje_A 86 VLNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877764
No 23
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.68 E-value=3.5e-17 Score=94.04 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=43.6
Q ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc----cchhHHHHHHhhhhcCCCC
Q 036787 3 RAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP----KSGKSCRLRWMNYLRPDIK 60 (85)
Q Consensus 3 r~~~~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia----r~~~qcr~rw~~~L~~~~~ 60 (85)
|.-.+.+|.+++|+||+|||++|++++.+|| .+|+.|| ||+.||++||.. |....+
T Consensus 12 ~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~lgRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 12 ENLYFQGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAALGRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp -------CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHHTSCHHHHHHHHHH-CSCCCS
T ss_pred ceeeecCCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHhCCCHHHHHHHHHH-HHHHcc
Confidence 4456788999999999999999999999999 5799998 799999999985 444443
No 24
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.65 E-value=3.3e-16 Score=91.95 Aligned_cols=64 Identities=13% Similarity=0.276 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccc---------cchhHHHHHHhhhh-----cCCCCC-CCCCHHHHHHHHHHHHH
Q 036787 15 GAWSKEEDDKLGAYILKYGHWNWAQLP---------KSGKSCRLRWMNYL-----RPDIKH-GNYTKEEEDTIIKTRQQ 78 (85)
Q Consensus 15 g~Wt~eED~~L~~~v~~~g~~~W~~Ia---------r~~~qcr~rw~~~L-----~~~~~~-~~wt~eEd~~L~~~~~~ 78 (85)
.+||+|||+.|+.+|++||.++|+.|+ ||+.||++||+++| +|.+++ .+..++....++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999988999986 69999999999988 676655 57888888888888764
No 25
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.65 E-value=7.1e-17 Score=101.29 Aligned_cols=60 Identities=25% Similarity=0.462 Sum_probs=55.2
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHH
Q 036787 7 YDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKE 67 (85)
Q Consensus 7 ~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~e 67 (85)
+.+|.+++|+||+|||++|+.+|..|| .+|..|| ||+.||++||.++|.+.+..++|+.+
T Consensus 47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~ 111 (131)
T 3zqc_A 47 HLDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKE 111 (131)
T ss_dssp HTSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCC
T ss_pred ccCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCccc
Confidence 567899999999999999999999999 6999999 69999999999999999988887754
No 26
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.62 E-value=5.5e-16 Score=105.71 Aligned_cols=70 Identities=19% Similarity=0.323 Sum_probs=60.2
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCC-----Cccccc-----cchhHHHHHHhhhhcCCCC------------------
Q 036787 9 GRGMKKGAWSKEEDDKLGAYILKYGHW-----NWAQLP-----KSGKSCRLRWMNYLRPDIK------------------ 60 (85)
Q Consensus 9 ~~~~~kg~Wt~eED~~L~~~v~~~g~~-----~W~~Ia-----r~~~qcr~rw~~~L~~~~~------------------ 60 (85)
.+.+++++||+|||++|+.+|.++|.. .|..|| ||+.|||+||..+|.+.++
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 456889999999999999999999853 299999 6999999999999999987
Q ss_pred -----------CCCCCHHHHHHHHHHHHH
Q 036787 61 -----------HGNYTKEEEDTIIKTRQQ 78 (85)
Q Consensus 61 -----------~~~wt~eEd~~L~~~~~~ 78 (85)
+..||.+||-.|+..+.+
T Consensus 83 ~ikis~lp~siK~rftaeeDy~L~~~i~~ 111 (246)
T 1ign_A 83 LIKTKVLPPSIKRKFSADEDYTLAIAVKK 111 (246)
T ss_dssp BCEESSCCCCSCCCCCHHHHHHHHHHHHH
T ss_pred ceeeeccCccccCccchhccHHHHHHHHH
Confidence 789999999999999876
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.55 E-value=4.9e-15 Score=89.49 Aligned_cols=50 Identities=22% Similarity=0.464 Sum_probs=45.9
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcC
Q 036787 7 YDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRP 57 (85)
Q Consensus 7 ~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~ 57 (85)
+.+|.+++|+||+|||++|+.+|..|| .+|..|| ||+.||++||..+|..
T Consensus 49 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 49 HLNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp TTCCCCCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCTTCCHHHHHHHHHHHTC-
T ss_pred ccCCcccccCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 567899999999999999999999999 6999998 6999999999999865
No 28
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.30 E-value=5.6e-16 Score=91.86 Aligned_cols=52 Identities=21% Similarity=0.453 Sum_probs=46.9
Q ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcC
Q 036787 5 PPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRP 57 (85)
Q Consensus 5 ~~~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~ 57 (85)
+....|.+.+|+||+|||++|+.+|..||. +|..|| ||+.||++||.++|..
T Consensus 7 ~~~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 7 HSSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 345678999999999999999999999995 899999 6999999999999863
No 29
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.53 E-value=8.6e-15 Score=85.11 Aligned_cols=46 Identities=15% Similarity=0.383 Sum_probs=42.6
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhh
Q 036787 8 DGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNY 54 (85)
Q Consensus 8 ~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~ 54 (85)
.+....+++||+|||.+|+++|..|| ++|..|| ||+.||+.||.++
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 45567799999999999999999999 8999999 7999999999998
No 30
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.50 E-value=1.9e-14 Score=87.41 Aligned_cols=50 Identities=32% Similarity=0.617 Sum_probs=46.0
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcC
Q 036787 7 YDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRP 57 (85)
Q Consensus 7 ~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~ 57 (85)
+++|.+++|+||+|||++|+.+|..|| .+|..|| ||+.||++||..++..
T Consensus 46 ~L~p~i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 46 YINPALRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFLKNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp HSSSCCTTCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred HHcccccccccCHHHHHHHHHHHHHhC-cCHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence 467899999999999999999999999 5999999 6999999999998764
No 31
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.49 E-value=2.9e-14 Score=88.86 Aligned_cols=50 Identities=22% Similarity=0.471 Sum_probs=46.3
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcC
Q 036787 7 YDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRP 57 (85)
Q Consensus 7 ~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~ 57 (85)
+.+|.+++|+||+|||++|+.++..|| .+|..|| ||+.||++||..+|..
T Consensus 72 ~l~p~~~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 72 HLNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp TTCSSSCCSCCCHHHHHHHHHHHHHHC-SCHHHHGGGSTTCCHHHHHHHHHTTTTC
T ss_pred hcccccccccCCHHHHHHHHHHHHHHC-cCHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 567899999999999999999999999 6999999 6999999999998864
No 32
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.47 E-value=3.2e-14 Score=88.66 Aligned_cols=49 Identities=27% Similarity=0.568 Sum_probs=45.4
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhc
Q 036787 7 YDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLR 56 (85)
Q Consensus 7 ~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~ 56 (85)
+.+|.+++|+||+|||++|+.+|..|| .+|..|| ||+.||++||..++.
T Consensus 55 ~l~p~~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l~~ 108 (126)
T 3osg_A 55 YLAPSISHTPWTAEEDALLVQKIQEYG-RQWAIIAKFFPGRTDIHIKNRWVTISN 108 (126)
T ss_dssp HTSTTSCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred hcccccccccCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999 6999998 699999999999875
No 33
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.46 E-value=4.3e-14 Score=81.09 Aligned_cols=52 Identities=15% Similarity=0.339 Sum_probs=45.5
Q ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHhC---CCCccccc-----cchhHHHHHHhhhhc
Q 036787 5 PPYDGRGMKKGAWSKEEDDKLGAYILKYG---HWNWAQLP-----KSGKSCRLRWMNYLR 56 (85)
Q Consensus 5 ~~~~~~~~~kg~Wt~eED~~L~~~v~~~g---~~~W~~Ia-----r~~~qcr~rw~~~L~ 56 (85)
+....+.+.+++||++||.+|+.++..|| ...|..|| ||+.||+.||.+++.
T Consensus 9 ~~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 9 LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34466778899999999999999999998 35899999 699999999998875
No 34
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.38 E-value=1.2e-13 Score=79.15 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=27.5
Q ss_pred HHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787 48 RLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKIM 84 (85)
Q Consensus 48 r~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~W~ 84 (85)
--||.++|+|.+++++||+|||++|++++.+||++|+
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~ 46 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWA 46 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHH
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHH
Confidence 3589999999999999999999999999999999996
No 35
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.17 E-value=1.4e-11 Score=73.42 Aligned_cols=43 Identities=14% Similarity=0.368 Sum_probs=38.4
Q ss_pred CcCCCCHHHHHHHHHHHHHhC---CCCccccc-----cchhHHHHHHhhhh
Q 036787 13 KKGAWSKEEDDKLGAYILKYG---HWNWAQLP-----KSGKSCRLRWMNYL 55 (85)
Q Consensus 13 ~kg~Wt~eED~~L~~~v~~~g---~~~W~~Ia-----r~~~qcr~rw~~~L 55 (85)
.+++||+|||.+|..++..|| ...|..|| ||..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 468999999999999999997 45799999 69999999999975
No 36
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.13 E-value=5e-11 Score=66.10 Aligned_cols=44 Identities=14% Similarity=0.276 Sum_probs=40.3
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccc--------cchhHHHHHHhhhhc
Q 036787 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLP--------KSGKSCRLRWMNYLR 56 (85)
Q Consensus 12 ~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia--------r~~~qcr~rw~~~L~ 56 (85)
-.+.+||+|||+.|++.|++||. +|..|+ ||..++++||++...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 36889999999999999999995 999998 699999999999864
No 37
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=8e-11 Score=65.73 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=30.3
Q ss_pred hhhcCCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787 53 NYLRPDIKHGNYTKEEEDTIIKTRQQHGNKIM 84 (85)
Q Consensus 53 ~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~W~ 84 (85)
.+|+|.+++++||++||.+|++++..||++|+
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~ 32 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWR 32 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHH
Confidence 37999999999999999999999999999995
No 38
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=1e-09 Score=60.53 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=41.5
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhh
Q 036787 7 YDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYL 55 (85)
Q Consensus 7 ~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L 55 (85)
.++..-..++||+||++++..++..|| .+|..|| ||..||..+|....
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 345556778999999999999999999 6999999 69999999997653
No 39
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.83 E-value=3e-09 Score=60.59 Aligned_cols=48 Identities=13% Similarity=0.268 Sum_probs=41.5
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCC---CCccccc----cchhHHHHHHhhhhcC
Q 036787 10 RGMKKGAWSKEEDDKLGAYILKYGH---WNWAQLP----KSGKSCRLRWMNYLRP 57 (85)
Q Consensus 10 ~~~~kg~Wt~eED~~L~~~v~~~g~---~~W~~Ia----r~~~qcr~rw~~~L~~ 57 (85)
+....+.||.|||.+|..++..|+. +.|..|| ||..||+.+|..+...
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4466789999999999999999973 4699999 7999999999987643
No 40
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.82 E-value=1.6e-09 Score=61.36 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=28.4
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787 55 LRPDIKHGNYTKEEEDTIIKTRQQHGNKIM 84 (85)
Q Consensus 55 L~~~~~~~~wt~eEd~~L~~~~~~~g~~W~ 84 (85)
++|.+++++||+|||.+|++++..||++|+
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~ 32 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWT 32 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHH
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHH
Confidence 578999999999999999999999999995
No 41
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.77 E-value=2.8e-09 Score=58.28 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=26.7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CCCC
Q 036787 56 RPDIKHGNYTKEEEDTIIKTRQQHG-NKIM 84 (85)
Q Consensus 56 ~~~~~~~~wt~eEd~~L~~~~~~~g-~~W~ 84 (85)
+|.+++++||+|||.+|+++|.+|| ++|+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~ 32 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWK 32 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHH
Confidence 5788999999999999999999999 5895
No 42
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.73 E-value=4.7e-09 Score=57.65 Aligned_cols=43 Identities=26% Similarity=0.437 Sum_probs=37.0
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCcccccc------chhHHHHHHhhhhc
Q 036787 14 KGAWSKEEDDKLGAYILKY--------GHWNWAQLPK------SGKSCRLRWMNYLR 56 (85)
Q Consensus 14 kg~Wt~eED~~L~~~v~~~--------g~~~W~~Iar------~~~qcr~rw~~~L~ 56 (85)
+.+||+|||+.|+..|..+ |..-|..+++ |-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 4446888873 99999999999884
No 43
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.65 E-value=8.4e-09 Score=54.80 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=22.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCC
Q 036787 59 IKHGNYTKEEEDTIIKTRQQHGN-KIM 84 (85)
Q Consensus 59 ~~~~~wt~eEd~~L~~~~~~~g~-~W~ 84 (85)
+++++||++||.+|+++|.+||+ +|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~ 27 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWK 27 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHH
Confidence 46899999999999999999998 895
No 44
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.65 E-value=1e-08 Score=56.19 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=26.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CCCC
Q 036787 56 RPDIKHGNYTKEEEDTIIKTRQQHG-NKIM 84 (85)
Q Consensus 56 ~~~~~~~~wt~eEd~~L~~~~~~~g-~~W~ 84 (85)
.+.+.+++||++||.+|+++|..|| ++|.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~ 32 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQ 32 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHH
Confidence 4678899999999999999999999 7895
No 45
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.64 E-value=1e-08 Score=54.81 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=22.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CCCC
Q 036787 60 KHGNYTKEEEDTIIKTRQQHG-NKIM 84 (85)
Q Consensus 60 ~~~~wt~eEd~~L~~~~~~~g-~~W~ 84 (85)
++++||++||.+|+++|..|| ++|+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~ 26 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWS 26 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHH
Confidence 478999999999999999999 6895
No 46
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.63 E-value=1.4e-08 Score=56.92 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=27.3
Q ss_pred hhcCCCCCCCCCHHHHHHHHHHHHHhC-CCCC
Q 036787 54 YLRPDIKHGNYTKEEEDTIIKTRQQHG-NKIM 84 (85)
Q Consensus 54 ~L~~~~~~~~wt~eEd~~L~~~~~~~g-~~W~ 84 (85)
...+...+++||++||.+|+++|.+|| ++|+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~ 34 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWS 34 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHH
Confidence 345677899999999999999999999 6895
No 47
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.61 E-value=1.5e-08 Score=53.89 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=23.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCC
Q 036787 59 IKHGNYTKEEEDTIIKTRQQHGN-KIM 84 (85)
Q Consensus 59 ~~~~~wt~eEd~~L~~~~~~~g~-~W~ 84 (85)
+++++||++||.+|+++|.+||+ +|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~ 27 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWS 27 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHH
Confidence 46899999999999999999997 585
No 48
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=1.9e-08 Score=56.53 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=26.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CCCC
Q 036787 56 RPDIKHGNYTKEEEDTIIKTRQQHG-NKIM 84 (85)
Q Consensus 56 ~~~~~~~~wt~eEd~~L~~~~~~~g-~~W~ 84 (85)
.|.+++++||++||.+|+++|.+|| ++|+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~ 33 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWS 33 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHH
Confidence 4678999999999999999999999 7885
No 49
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.00 E-value=6.4e-09 Score=61.25 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=30.0
Q ss_pred hhhcCCCCCCCCCHHHHHHHHHHHHHhCCCCCC
Q 036787 53 NYLRPDIKHGNYTKEEEDTIIKTRQQHGNKIMK 85 (85)
Q Consensus 53 ~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~W~k 85 (85)
..++|.+++++||++||.+|++++..||++|++
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~ 40 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSA 40 (89)
Confidence 356789999999999999999999999999963
No 50
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.57 E-value=6.3e-08 Score=65.62 Aligned_cols=44 Identities=27% Similarity=0.382 Sum_probs=40.2
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhc
Q 036787 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLR 56 (85)
Q Consensus 12 ~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~ 56 (85)
...++||.||+.+++.++..|| .+|..|| ||..||+.+|.++..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999 6999999 599999999998864
No 51
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.49 E-value=1.1e-07 Score=51.77 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=25.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CCCC
Q 036787 56 RPDIKHGNYTKEEEDTIIKTRQQHG-NKIM 84 (85)
Q Consensus 56 ~~~~~~~~wt~eEd~~L~~~~~~~g-~~W~ 84 (85)
+..+.+++||++||.+|+++|.+|| ++|.
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~ 33 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWA 33 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHH
Confidence 3456789999999999999999999 7895
No 52
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.48 E-value=5e-08 Score=54.22 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=23.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCC
Q 036787 59 IKHGNYTKEEEDTIIKTRQQHGN-KIM 84 (85)
Q Consensus 59 ~~~~~wt~eEd~~L~~~~~~~g~-~W~ 84 (85)
.++++||+|||++|+++|.+||. +|+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~ 35 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWA 35 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchH
Confidence 46799999999999999999994 785
No 53
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.42 E-value=8.2e-08 Score=53.10 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=24.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787 59 IKHGNYTKEEEDTIIKTRQQHGNKIM 84 (85)
Q Consensus 59 ~~~~~wt~eEd~~L~~~~~~~g~~W~ 84 (85)
-++.+||+|||..|++.|.+||.+|+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~ 31 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWN 31 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHH
Confidence 36789999999999999999999995
No 54
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.34 E-value=3.4e-07 Score=52.19 Aligned_cols=43 Identities=21% Similarity=0.473 Sum_probs=37.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCccccc-----cchhHHHHHHhhhhc
Q 036787 14 KGAWSKEEDDKLGAYILKYGH---WNWAQLP-----KSGKSCRLRWMNYLR 56 (85)
Q Consensus 14 kg~Wt~eED~~L~~~v~~~g~---~~W~~Ia-----r~~~qcr~rw~~~L~ 56 (85)
...||.+|+.+|..++..|+. +.|..|| ||..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 468999999999999999974 4699998 699999999998764
No 55
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=9.1e-08 Score=54.31 Aligned_cols=29 Identities=10% Similarity=0.020 Sum_probs=26.3
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC------CCCC
Q 036787 56 RPDIKHGNYTKEEEDTIIKTRQQHG------NKIM 84 (85)
Q Consensus 56 ~~~~~~~~wt~eEd~~L~~~~~~~g------~~W~ 84 (85)
+|.+.+++||+|||.+|++++..|| ++|.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~ 37 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQ 37 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHH
Confidence 4788899999999999999999999 6784
No 56
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.20 E-value=1.1e-06 Score=50.62 Aligned_cols=27 Identities=7% Similarity=0.064 Sum_probs=24.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787 58 DIKHGNYTKEEEDTIIKTRQQHGNKIM 84 (85)
Q Consensus 58 ~~~~~~wt~eEd~~L~~~~~~~g~~W~ 84 (85)
...+++||++||.+|++++..||++|.
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~ 41 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWN 41 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHH
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHH
Confidence 346789999999999999999999995
No 57
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.18 E-value=5.4e-07 Score=55.86 Aligned_cols=30 Identities=10% Similarity=0.228 Sum_probs=26.9
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHHhCC-CCC
Q 036787 55 LRPDIKHGNYTKEEEDTIIKTRQQHGN-KIM 84 (85)
Q Consensus 55 L~~~~~~~~wt~eEd~~L~~~~~~~g~-~W~ 84 (85)
+.+..++++||++||..|+++|.+||+ +|+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~ 41 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWR 41 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHH
Confidence 455678899999999999999999998 896
No 58
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.18 E-value=1.1e-06 Score=52.21 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=33.2
Q ss_pred chhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787 43 SGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKIM 84 (85)
Q Consensus 43 ~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~W~ 84 (85)
.+.=+.++|.++|.+ ++||.||+..|++|+.+||.+|.
T Consensus 16 i~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~ 53 (93)
T 3hm5_A 16 VPVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFV 53 (93)
T ss_dssp CCCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHH
T ss_pred CCccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCee
Confidence 344567899999976 89999999999999999999994
No 59
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.17 E-value=7.6e-07 Score=53.93 Aligned_cols=29 Identities=7% Similarity=0.189 Sum_probs=25.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CCC
Q 036787 56 RPDIKHGNYTKEEEDTIIKTRQQHGN-KIM 84 (85)
Q Consensus 56 ~~~~~~~~wt~eEd~~L~~~~~~~g~-~W~ 84 (85)
.+..++++||+|||..|++.|.+||+ +|+
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~ 37 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWR 37 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChH
Confidence 34567899999999999999999998 895
No 60
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.13 E-value=2.4e-06 Score=50.72 Aligned_cols=44 Identities=18% Similarity=0.371 Sum_probs=38.3
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccc----------cchhHHHHHHhhhhc
Q 036787 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLP----------KSGKSCRLRWMNYLR 56 (85)
Q Consensus 12 ~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia----------r~~~qcr~rw~~~L~ 56 (85)
+..++||.||+..|++|+.+|+ ..|..|+ ||..++++||..+..
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 4458999999999999999999 6998886 589999999988653
No 61
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.02 E-value=2.3e-06 Score=53.06 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=24.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CCC
Q 036787 57 PDIKHGNYTKEEEDTIIKTRQQHGN-KIM 84 (85)
Q Consensus 57 ~~~~~~~wt~eEd~~L~~~~~~~g~-~W~ 84 (85)
...++++||.|||+.|+++|.+||. +|+
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~ 55 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWR 55 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChH
Confidence 3456789999999999999999998 896
No 62
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=3.3e-05 Score=42.50 Aligned_cols=46 Identities=15% Similarity=0.300 Sum_probs=39.4
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc------cchhHHHHHHhhh
Q 036787 8 DGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP------KSGKSCRLRWMNY 54 (85)
Q Consensus 8 ~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia------r~~~qcr~rw~~~ 54 (85)
..|.+....||+||-.+....+..|| .+|..|+ |+..||...|...
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 35678888999999999999999999 5998887 4999998888643
No 63
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.84 E-value=3.4e-06 Score=47.93 Aligned_cols=28 Identities=11% Similarity=0.011 Sum_probs=24.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CCCC
Q 036787 57 PDIKHGNYTKEEEDTIIKTRQQHG----NKIM 84 (85)
Q Consensus 57 ~~~~~~~wt~eEd~~L~~~~~~~g----~~W~ 84 (85)
+.+.+++||.+||.+|++++..|| ++|.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~ 45 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWD 45 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHH
Confidence 356788999999999999999999 6784
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.82 E-value=2e-05 Score=58.40 Aligned_cols=43 Identities=26% Similarity=0.354 Sum_probs=38.7
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhh
Q 036787 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYL 55 (85)
Q Consensus 12 ~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L 55 (85)
....+||.+|-.+++.++.+|| .+|..|| ||..||+..|.++-
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3568999999999999999999 6999999 59999999998763
No 65
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.74 E-value=1.1e-05 Score=46.73 Aligned_cols=43 Identities=23% Similarity=0.533 Sum_probs=35.2
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC---------CCccccc---------cchhHHHHHHhhhh
Q 036787 13 KKGAWSKEEDDKLGAYILKYGH---------WNWAQLP---------KSGKSCRLRWMNYL 55 (85)
Q Consensus 13 ~kg~Wt~eED~~L~~~v~~~g~---------~~W~~Ia---------r~~~qcr~rw~~~L 55 (85)
+...||.+|-..|+.++..... ..|..|| ||+.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999975311 1599998 59999999999875
No 66
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.55 E-value=2.6e-05 Score=44.31 Aligned_cols=40 Identities=8% Similarity=0.215 Sum_probs=33.1
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCC---Cccccc-----cchhHHHHHHh
Q 036787 13 KKGAWSKEEDDKLGAYILKYGHW---NWAQLP-----KSGKSCRLRWM 52 (85)
Q Consensus 13 ~kg~Wt~eED~~L~~~v~~~g~~---~W~~Ia-----r~~~qcr~rw~ 52 (85)
..++||.+|+.+|..++..|+.+ .|..|| ||..+|+.+|.
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 35689999999999999999643 799998 69999999985
No 67
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.62 E-value=1.5e-05 Score=44.62 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=36.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC--Cccccc----cchhHHHHHHhhhhc
Q 036787 14 KGAWSKEEDDKLGAYILKYGHW--NWAQLP----KSGKSCRLRWMNYLR 56 (85)
Q Consensus 14 kg~Wt~eED~~L~~~v~~~g~~--~W~~Ia----r~~~qcr~rw~~~L~ 56 (85)
--.||.|||..|+..+++-|.. .|..|| |++.|+.+||+..+.
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Lnks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKLDKNPNQVSERFQQLMK 62 (70)
Confidence 3469999999999999998853 798888 699999999988763
No 68
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.44 E-value=0.00013 Score=42.95 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCccccc-----cchhHHHHHHhhhh
Q 036787 15 GAWSKEEDDKLGAYILKYGH--WNWAQLP-----KSGKSCRLRWMNYL 55 (85)
Q Consensus 15 g~Wt~eED~~L~~~v~~~g~--~~W~~Ia-----r~~~qcr~rw~~~L 55 (85)
--||.|||..|+..+++-|. ..|..|| |++.|+.+||+..+
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 35999999999999999875 3788887 69999999998865
No 69
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=9.9e-05 Score=40.18 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=22.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787 60 KHGNYTKEEEDTIIKTRQQHGNKIM 84 (85)
Q Consensus 60 ~~~~wt~eEd~~L~~~~~~~g~~W~ 84 (85)
..++||++|+.++++++..||++|.
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~ 35 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFG 35 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHH
Confidence 4579999999999999999999984
No 70
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.26 E-value=5.4e-05 Score=51.67 Aligned_cols=26 Identities=19% Similarity=0.492 Sum_probs=21.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC
Q 036787 57 PDIKHGNYTKEEEDTIIKTRQQHGNK 82 (85)
Q Consensus 57 ~~~~~~~wt~eEd~~L~~~~~~~g~~ 82 (85)
+.+++++||+|||++|+++|.++|++
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~ 29 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTR 29 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcC
Confidence 35688999999999999999999985
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.20 E-value=0.0014 Score=46.08 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccc
Q 036787 15 GAWSKEEDDKLGAYILKYGHWNWAQLP 41 (85)
Q Consensus 15 g~Wt~eED~~L~~~v~~~g~~~W~~Ia 41 (85)
+.||..+...++.++..||..+|..||
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA 137 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIA 137 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHT
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHH
Confidence 469999999999999999998999998
No 72
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.19 E-value=0.00035 Score=41.19 Aligned_cols=39 Identities=18% Similarity=0.382 Sum_probs=35.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhh
Q 036787 14 KGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMN 53 (85)
Q Consensus 14 kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~ 53 (85)
...||+||.++..+.+..|| .+|..|+ ||..+|-+.|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46799999999999999999 6999998 699999998854
No 73
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.15 E-value=0.0005 Score=40.64 Aligned_cols=44 Identities=18% Similarity=0.371 Sum_probs=37.5
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccc----------cchhHHHHHHhhhhc
Q 036787 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLP----------KSGKSCRLRWMNYLR 56 (85)
Q Consensus 12 ~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia----------r~~~qcr~rw~~~L~ 56 (85)
+....||.||...|++|+..|. -.|..|+ ||..+.++||..+..
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 4557899999999999999999 5888776 588999999988653
No 74
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.09 E-value=0.00013 Score=43.12 Aligned_cols=25 Identities=4% Similarity=0.093 Sum_probs=21.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CCCC
Q 036787 60 KHGNYTKEEEDTIIKTRQQHG----NKIM 84 (85)
Q Consensus 60 ~~~~wt~eEd~~L~~~~~~~g----~~W~ 84 (85)
..++||.+||.+|.+++..|| ++|+
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~ 35 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWA 35 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHH
Confidence 468999999999999999996 6785
No 75
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.04 E-value=0.00074 Score=37.72 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=35.1
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCccccc------cchhHHHHHHhh
Q 036787 13 KKGAWSKEEDDKLGAYILKYGHWNWAQLP------KSGKSCRLRWMN 53 (85)
Q Consensus 13 ~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia------r~~~qcr~rw~~ 53 (85)
...+||+||-.+....+..|| .+|..|+ |+..+|...|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 456899999999999999999 5999887 499999988865
No 76
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.00 E-value=0.0008 Score=44.16 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=27.9
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc
Q 036787 9 GRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP 41 (85)
Q Consensus 9 ~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia 41 (85)
.+......||.+||..|+..+.+||-++|..|-
T Consensus 129 ~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir 161 (211)
T 4b4c_A 129 KAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIK 161 (211)
T ss_dssp CCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHH
Confidence 344445679999999999999999999999886
No 77
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.79 E-value=0.0027 Score=41.60 Aligned_cols=31 Identities=13% Similarity=0.077 Sum_probs=24.2
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhC--CCCccccc
Q 036787 11 GMKKGAWSKEEDDKLGAYILKYG--HWNWAQLP 41 (85)
Q Consensus 11 ~~~kg~Wt~eED~~L~~~v~~~g--~~~W~~Ia 41 (85)
.-....||..|=..|+.++.+|| ...|..|+
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~ 36 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIA 36 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHH
Confidence 34556899999999999999999 45788886
No 78
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.65 E-value=0.0012 Score=37.10 Aligned_cols=27 Identities=7% Similarity=0.128 Sum_probs=22.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CCCC
Q 036787 58 DIKHGNYTKEEEDTIIKTRQQHG----NKIM 84 (85)
Q Consensus 58 ~~~~~~wt~eEd~~L~~~~~~~g----~~W~ 84 (85)
....++||.+||.+|.+++..|+ ++|.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~ 35 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWE 35 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHH
Confidence 34578999999999999999997 5674
No 79
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.52 E-value=0.0024 Score=34.54 Aligned_cols=19 Identities=11% Similarity=0.254 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q 036787 61 HGNYTKEEEDTIIKTRQQH 79 (85)
Q Consensus 61 ~~~wt~eEd~~L~~~~~~~ 79 (85)
+.+||+|||..|++.|.+|
T Consensus 2 R~~FT~edD~~L~~~v~~~ 20 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKEN 20 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 5799999999999999999
No 80
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=96.30 E-value=0.0044 Score=42.81 Aligned_cols=28 Identities=43% Similarity=0.815 Sum_probs=26.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccc
Q 036787 14 KGAWSKEEDDKLGAYILKYGHWNWAQLP 41 (85)
Q Consensus 14 kg~Wt~eED~~L~~~v~~~g~~~W~~Ia 41 (85)
...|+.+||..|+..|.+||.++|.+|-
T Consensus 168 ~c~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 168 SSNWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 3569999999999999999999999997
No 81
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.01 E-value=0.0069 Score=32.95 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=25.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787 57 PDIKHGNYTKEEEDTIIKTRQQHGNKIM 84 (85)
Q Consensus 57 ~~~~~~~wt~eEd~~L~~~~~~~g~~W~ 84 (85)
|.+...+||++|-.+..+.+..||..|.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~ 32 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFF 32 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHH
Confidence 6677889999999999999999999873
No 82
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=96.01 E-value=0.0041 Score=42.13 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCC
Q 036787 61 HGNYTKEEEDTIIKTRQQHGNKIM 84 (85)
Q Consensus 61 ~~~wt~eEd~~L~~~~~~~g~~W~ 84 (85)
..+||++|+.++++++..||++|.
T Consensus 133 s~~WTeEE~~lFleAl~kYGKDW~ 156 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKYGRDFQ 156 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHH
Confidence 469999999999999999999995
No 83
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.88 E-value=0.0084 Score=35.33 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=26.5
Q ss_pred HHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCCCC
Q 036787 49 LRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKI 83 (85)
Q Consensus 49 ~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~W 83 (85)
+.|..+|. ...||.+|...|++|+.+|+-+|
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw 52 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRF 52 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCe
Confidence 45777775 36899999999999999999887
No 84
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.10 E-value=0.045 Score=38.38 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=35.1
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC---CCccccc-----------------cchhHHHHHHhhhh
Q 036787 13 KKGAWSKEEDDKLGAYILKYGH---WNWAQLP-----------------KSGKSCRLRWMNYL 55 (85)
Q Consensus 13 ~kg~Wt~eED~~L~~~v~~~g~---~~W~~Ia-----------------r~~~qcr~rw~~~L 55 (85)
+...||.+||..|+-++..||- ++|..|. ||+.++..|=...|
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi 273 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI 273 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 5568999999999999999998 8898884 58888777755444
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=92.53 E-value=0.1 Score=28.78 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=21.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCC
Q 036787 60 KHGNYTKEEEDTIIKTRQQHGNKI 83 (85)
Q Consensus 60 ~~~~wt~eEd~~L~~~~~~~g~~W 83 (85)
...+||++|-.+..+.+..||..|
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKdf 30 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKDF 30 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSCH
T ss_pred CCCCCCHHHHHHHHHHHHHhCccH
Confidence 357999999999999999999887
No 86
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=90.89 E-value=0.3 Score=27.32 Aligned_cols=21 Identities=5% Similarity=0.026 Sum_probs=18.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC
Q 036787 61 HGNYTKEEEDTIIKTRQQHGN 81 (85)
Q Consensus 61 ~~~wt~eEd~~L~~~~~~~g~ 81 (85)
..+||.+|+.+|..+...|+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~ 28 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPK 28 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCS
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 468999999999999999974
No 87
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=90.64 E-value=0.19 Score=29.26 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCC
Q 036787 61 HGNYTKEEEDTIIKTRQQHGNKIM 84 (85)
Q Consensus 61 ~~~wt~eEd~~L~~~~~~~g~~W~ 84 (85)
...||++|..+..+....||.+|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~ 66 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFG 66 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHH
Confidence 578999999999999999999873
No 88
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=90.56 E-value=0.56 Score=25.59 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.2
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhC
Q 036787 10 RGMKKGAWSKEEDDKLGAYILKYG 33 (85)
Q Consensus 10 ~~~~kg~Wt~eED~~L~~~v~~~g 33 (85)
+...+-.||+|..+..+.+|+..|
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG 26 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLG 26 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhC
Confidence 345677899999999999999999
No 89
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=89.82 E-value=0.55 Score=33.78 Aligned_cols=43 Identities=23% Similarity=0.255 Sum_probs=34.2
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC---CCccccc-----------------cchhHHHHHHhhhh
Q 036787 13 KKGAWSKEEDDKLGAYILKYGH---WNWAQLP-----------------KSGKSCRLRWMNYL 55 (85)
Q Consensus 13 ~kg~Wt~eED~~L~~~v~~~g~---~~W~~Ia-----------------r~~~qcr~rw~~~L 55 (85)
++..||.+||..|+-++..||- ++|..|- ||+..+..|=...|
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi 289 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLL 289 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 4557999999999999999998 8898883 57777776654443
No 90
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=89.07 E-value=0.28 Score=36.43 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCC
Q 036787 61 HGNYTKEEEDTIIKTRQQHGNKIM 84 (85)
Q Consensus 61 ~~~wt~eEd~~L~~~~~~~g~~W~ 84 (85)
..+||++|-.++++++.+||..|.
T Consensus 380 ~~~WT~eE~~~f~~al~~yGkdw~ 403 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGRDFQ 403 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTCHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHH
Confidence 469999999999999999999994
No 91
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=86.88 E-value=0.18 Score=28.41 Aligned_cols=24 Identities=4% Similarity=-0.112 Sum_probs=19.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----CCC
Q 036787 61 HGNYTKEEEDTIIKTRQQHGN----KIM 84 (85)
Q Consensus 61 ~~~wt~eEd~~L~~~~~~~g~----~W~ 84 (85)
.++||.+|+.++-.+...|+. +|-
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWe 47 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWK 47 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSST
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHH
Confidence 468999999999999999985 674
No 92
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=86.54 E-value=0.13 Score=28.57 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHHhCC
Q 036787 62 GNYTKEEEDTIIKTRQQHGN 81 (85)
Q Consensus 62 ~~wt~eEd~~L~~~~~~~g~ 81 (85)
-.||.+||..||...++-|.
T Consensus 15 vlWTReeDR~IL~~cq~~G~ 34 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGP 34 (70)
Confidence 36999999999999998886
No 93
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=85.54 E-value=2.2 Score=30.67 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC
Q 036787 60 KHGNYTKEEEDTIIKTRQQHGN 81 (85)
Q Consensus 60 ~~~~wt~eEd~~L~~~~~~~g~ 81 (85)
+...||++||..||-++.+||=
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~ 248 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGL 248 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTT
T ss_pred CCCccCHHHHHHHHHHHHHhcc
Confidence 3457999999999999999983
No 94
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=85.22 E-value=0.72 Score=27.00 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHHHHHHHhCC
Q 036787 62 GNYTKEEEDTIIKTRQQHGN 81 (85)
Q Consensus 62 ~~wt~eEd~~L~~~~~~~g~ 81 (85)
-.||.+||..||...++-|.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~ 53 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGA 53 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTS
T ss_pred EEeccccCHHHHHHHHhcCC
Confidence 37999999999999998875
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=83.02 E-value=0.82 Score=31.43 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHhC-CCC
Q 036787 63 NYTKEEEDTIIKTRQQHG-NKI 83 (85)
Q Consensus 63 ~wt~eEd~~L~~~~~~~g-~~W 83 (85)
.|+.+||..||.-+.+|| +.|
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~W 191 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSW 191 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCH
T ss_pred CcChHHHHHHHHHHHHHcCCcH
Confidence 499999999999999999 456
No 96
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=80.82 E-value=0.68 Score=28.13 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=30.1
Q ss_pred CCcccccc----------chhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 036787 35 WNWAQLPK----------SGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQ 77 (85)
Q Consensus 35 ~~W~~Iar----------~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~ 77 (85)
+.|..||. .+...+..|..+|.| -..++++|-..|.+-|.
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~---YE~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS---YDSLSPEEHRRLEKEVL 113 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH---HHHCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH---HHCcCHHHHhhHHHHHH
Confidence 47888873 346779999999976 34588899888877664
No 97
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=78.52 E-value=1.7 Score=27.89 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=18.4
Q ss_pred CCCCcCCCCHHHHHHHH--------HHHHHhC
Q 036787 10 RGMKKGAWSKEEDDKLG--------AYILKYG 33 (85)
Q Consensus 10 ~~~~kg~Wt~eED~~L~--------~~v~~~g 33 (85)
|.-..|-||+++|+.|. .++++||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 34568999999999875 4667776
No 98
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=78.32 E-value=4.5 Score=21.90 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCC
Q 036787 59 IKHGNYTKEEEDTIIKTRQQHGNKI 83 (85)
Q Consensus 59 ~~~~~wt~eEd~~L~~~~~~~g~~W 83 (85)
..+-.||+|.-...++++..+|..+
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~ 29 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVER 29 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTT
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCC
Confidence 3467899999999999999999654
No 99
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=60.62 E-value=3.7 Score=24.36 Aligned_cols=34 Identities=18% Similarity=0.348 Sum_probs=24.2
Q ss_pred HHHHHHHHhCC-------CCcccccc-----chhHHHHHHhhhhcC
Q 036787 24 KLGAYILKYGH-------WNWAQLPK-----SGKSCRLRWMNYLRP 57 (85)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Iar-----~~~qcr~rw~~~L~~ 57 (85)
.|..+|...|. +.|..|++ .+...+..|..+|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 46666666652 37888884 467888889888864
No 100
>2xsa_A Ogoga, hyaluronoglucosaminidase; O-GLCNACYLATION, O-GLCNACASE, glycosyl hydrolase, hydrolase; 2.00A {Oceanicola granulosus} PDB: 2xsb_A*
Probab=59.97 E-value=13 Score=27.34 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCC
Q 036787 15 GAWSKEEDDKLGAYILKYGHW 35 (85)
Q Consensus 15 g~Wt~eED~~L~~~v~~~g~~ 35 (85)
.|||.|+-..|++....++-+
T Consensus 12 ~PWS~e~R~~l~~f~g~~kmN 32 (447)
T 2xsa_A 12 RDWRRDERATVMDWIAAAGMN 32 (447)
T ss_dssp SCCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHcCCc
Confidence 389999999999999988643
No 101
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=58.53 E-value=3.5 Score=24.02 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=23.7
Q ss_pred HHHHHHHHhCC-------CCcccccc----------chhHHHHHHhhhhcC
Q 036787 24 KLGAYILKYGH-------WNWAQLPK----------SGKSCRLRWMNYLRP 57 (85)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Iar----------~~~qcr~rw~~~L~~ 57 (85)
.|..+|...|. +.|..|++ .+.+.+..|.++|.|
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46666666641 47998884 346789999998875
No 102
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=56.41 E-value=3.8 Score=24.59 Aligned_cols=34 Identities=21% Similarity=0.478 Sum_probs=23.4
Q ss_pred HHHHHHHHhCC-------CCcccccc---------chhHHHHHHhhhhcC
Q 036787 24 KLGAYILKYGH-------WNWAQLPK---------SGKSCRLRWMNYLRP 57 (85)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Iar---------~~~qcr~rw~~~L~~ 57 (85)
+|..+|...|. +.|..|++ .+.+.+..|.++|.|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46667766652 37998884 346778888888754
No 103
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=55.71 E-value=4 Score=24.53 Aligned_cols=34 Identities=21% Similarity=0.459 Sum_probs=21.6
Q ss_pred HHHHHHHHhCC-------CCcccccc---------chhHHHHHHhhhhcC
Q 036787 24 KLGAYILKYGH-------WNWAQLPK---------SGKSCRLRWMNYLRP 57 (85)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Iar---------~~~qcr~rw~~~L~~ 57 (85)
.|..+|...|. +.|..|++ .+.+.+..|.++|.|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 45566665542 36888874 345778888887753
No 104
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=54.40 E-value=12 Score=23.02 Aligned_cols=51 Identities=25% Similarity=0.368 Sum_probs=32.6
Q ss_pred HHHHHHHHhCC-------CCcccccc----------chhHHHHHHhhhhcC--CCCCCCCCHHHHHHHHH
Q 036787 24 KLGAYILKYGH-------WNWAQLPK----------SGKSCRLRWMNYLRP--DIKHGNYTKEEEDTIIK 74 (85)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Iar----------~~~qcr~rw~~~L~~--~~~~~~wt~eEd~~L~~ 74 (85)
.|..+|...|. +.|..|++ .+.+.+..|..+|.| ...++.=+++|-+.-++
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~~~~ 137 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAID 137 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 45566666652 37988884 356789999999976 33446656666544433
No 105
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=53.09 E-value=4.7 Score=24.24 Aligned_cols=34 Identities=26% Similarity=0.514 Sum_probs=23.9
Q ss_pred HHHHHHHHhCC-------CCcccccc----------chhHHHHHHhhhhcC
Q 036787 24 KLGAYILKYGH-------WNWAQLPK----------SGKSCRLRWMNYLRP 57 (85)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Iar----------~~~qcr~rw~~~L~~ 57 (85)
.|..+|...|. +.|..|++ .+.+.+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46666666652 37988884 356778889998865
No 106
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=52.05 E-value=2.9 Score=23.79 Aligned_cols=21 Identities=14% Similarity=0.439 Sum_probs=13.3
Q ss_pred Ccccccc---------chhHHHHHHhhhhc
Q 036787 36 NWAQLPK---------SGKSCRLRWMNYLR 56 (85)
Q Consensus 36 ~W~~Iar---------~~~qcr~rw~~~L~ 56 (85)
.|..|++ .+.+.+..|.++|.
T Consensus 59 ~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 59 KWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp THHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred cHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 6777763 24566777777664
No 107
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=51.57 E-value=10 Score=23.20 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCCCCcccccc----chhHHHHHHhhhhcCC
Q 036787 20 EEDDKLGAYILKYGHWNWAQLPK----SGKSCRLRWMNYLRPD 58 (85)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Iar----~~~qcr~rw~~~L~~~ 58 (85)
+-|..|+.+.+..+.-.+..||+ |+..|+.|.......+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45788999998888889999996 9999999988876544
No 108
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=50.56 E-value=5.5 Score=23.65 Aligned_cols=34 Identities=21% Similarity=0.454 Sum_probs=24.0
Q ss_pred HHHHHHHHhCC-------CCcccccc---------chhHHHHHHhhhhcC
Q 036787 24 KLGAYILKYGH-------WNWAQLPK---------SGKSCRLRWMNYLRP 57 (85)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Iar---------~~~qcr~rw~~~L~~ 57 (85)
+|..+|...|. +.|..|++ .+.+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 56677776652 37999884 256788888888854
No 109
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=49.80 E-value=16 Score=21.47 Aligned_cols=37 Identities=5% Similarity=-0.052 Sum_probs=29.6
Q ss_pred chhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 036787 43 SGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQH 79 (85)
Q Consensus 43 ~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~ 79 (85)
|..++.+.+.+.|..-......+++|...|+.|...+
T Consensus 16 s~~~~~~~~k~iL~~y~~g~~l~~~d~~~l~~lL~~H 52 (104)
T 2k0m_A 16 RKADALAFMKVMLNRYRPGDIVSTVDGAFLVEALKRH 52 (104)
T ss_dssp SHHHHHHHHHHHHHHSCTTEECCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC
Confidence 8889999999999755556788999888888877643
No 110
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=48.42 E-value=6.2 Score=22.83 Aligned_cols=34 Identities=21% Similarity=0.472 Sum_probs=21.1
Q ss_pred HHHHHHHHhCC-------CCcccccc---------chhHHHHHHhhhhcC
Q 036787 24 KLGAYILKYGH-------WNWAQLPK---------SGKSCRLRWMNYLRP 57 (85)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Iar---------~~~qcr~rw~~~L~~ 57 (85)
.|..+|...|. +.|..|++ .+.+.+..|..+|.|
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 45566666552 36888874 245677777777753
No 111
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=44.14 E-value=16 Score=16.47 Aligned_cols=10 Identities=30% Similarity=0.800 Sum_probs=7.5
Q ss_pred CCHHHHHHHH
Q 036787 17 WSKEEDDKLG 26 (85)
Q Consensus 17 Wt~eED~~L~ 26 (85)
||++|-+..+
T Consensus 1 ~s~~eRq~~L 10 (28)
T 3h8k_B 1 WSADERQRML 10 (28)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7888877654
No 112
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=39.17 E-value=5.9 Score=23.84 Aligned_cols=22 Identities=14% Similarity=0.393 Sum_probs=14.6
Q ss_pred Ccccccc-----chhHHHHHHhhhhcC
Q 036787 36 NWAQLPK-----SGKSCRLRWMNYLRP 57 (85)
Q Consensus 36 ~W~~Iar-----~~~qcr~rw~~~L~~ 57 (85)
.|..|++ .+...+..|.++|.|
T Consensus 71 ~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 71 QWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 5777764 456777777777754
No 113
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=34.80 E-value=48 Score=20.28 Aligned_cols=26 Identities=27% Similarity=0.557 Sum_probs=19.1
Q ss_pred cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 036787 42 KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIK 74 (85)
Q Consensus 42 r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~ 74 (85)
+|+.+||.-| ++ ...||+||+..|.+
T Consensus 128 kt~eeir~~f------~I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 128 KTPEEIRTTF------NI-KNDFTPEEEEEVRR 153 (160)
T ss_dssp CCHHHHHHHT------TC-CCCCCHHHHHHHHH
T ss_pred CCHHHHHHHc------CC-CCCCCHHHHHHHHH
Confidence 4888888876 23 34699999988754
No 114
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=30.04 E-value=54 Score=20.14 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhCCCCcccccc----chhHHHHHHhhhhcCC
Q 036787 19 KEEDDKLGAYILKYGHWNWAQLPK----SGKSCRLRWMNYLRPD 58 (85)
Q Consensus 19 ~eED~~L~~~v~~~g~~~W~~Iar----~~~qcr~rw~~~L~~~ 58 (85)
.+-|..|+.++...+.-.+.+||+ +...|+.|........
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESG 69 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 345678888888888779999995 8889999888776544
No 115
>2dll_A Interferon regulatory factor 4; IRF domain, NF-EM5, multiple myeloma oncogene 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.62 E-value=93 Score=18.55 Aligned_cols=44 Identities=18% Similarity=0.128 Sum_probs=34.0
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCcccc-cc-chhHHHHHHhhhhcC
Q 036787 13 KKGAWSKEEDDKLGAYILKYGHWNWAQL-PK-SGKSCRLRWMNYLRP 57 (85)
Q Consensus 13 ~kg~Wt~eED~~L~~~v~~~g~~~W~~I-ar-~~~qcr~rw~~~L~~ 57 (85)
.+.-|..++|..|.++-..+. +.+..- .+ .+..|+.+++..|+.
T Consensus 43 ~r~~~~~~~D~~iFkaWA~~~-Gk~~~g~d~~d~~~wK~nfRcALn~ 88 (121)
T 2dll_A 43 GKQDYNREEDAALFKAWALFK-GKFREGIDKPDPPTWKTRLRCALNK 88 (121)
T ss_dssp CCSSSCHHHHTHHHHHHHHHH-SCCCBTTBCCCHHHHHHHHHHHHHH
T ss_pred CcCCCCcchhhHHHHHHHHHc-CCCcCCCCCCCHHHHHHHHHHHhcc
Confidence 355677899999999998886 577543 22 889999999988864
No 116
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=28.68 E-value=53 Score=15.93 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHHhCC
Q 036787 63 NYTKEEEDTIIKTRQQHGN 81 (85)
Q Consensus 63 ~wt~eEd~~L~~~~~~~g~ 81 (85)
..|++|-..|.+.+...|-
T Consensus 21 Rlt~eE~~~l~~~A~~~g~ 39 (51)
T 2ba3_A 21 RFSPVEDETIRKKAEDSGL 39 (51)
T ss_dssp EECHHHHHHHHHHHHHHTC
T ss_pred EECHHHHHHHHHHHHHhCC
Confidence 4789999999999988874
No 117
>3s1b_A Mini-Z; VEGF, cystine knot, signaling protein; 2.90A {Homo sapiens}
Probab=28.11 E-value=48 Score=15.12 Aligned_cols=16 Identities=38% Similarity=0.831 Sum_probs=12.6
Q ss_pred hHHHHHHhh-hhcCCCC
Q 036787 45 KSCRLRWMN-YLRPDIK 60 (85)
Q Consensus 45 ~qcr~rw~~-~L~~~~~ 60 (85)
+.|-.||.. .|+|.++
T Consensus 3 kecllrykeaaldpnln 19 (34)
T 3s1b_A 3 KECLLRYKEAALDPNLN 19 (34)
T ss_dssp HHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhcCCChh
Confidence 678899987 6888765
No 118
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=27.86 E-value=38 Score=16.42 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=18.2
Q ss_pred hhHHH-HHHhhhhcCCCCCCCCCHHHHHHHH
Q 036787 44 GKSCR-LRWMNYLRPDIKHGNYTKEEEDTII 73 (85)
Q Consensus 44 ~~qcr-~rw~~~L~~~~~~~~wt~eEd~~L~ 73 (85)
+.|.. .||..-++. +..|||.||-..++
T Consensus 4 pe~~~~~~~~~ei~~--RNrpltDEeLD~mL 32 (39)
T 3lqv_P 4 PEQLQAWRWEREIDE--RNRPLSDEELDAMF 32 (39)
T ss_dssp HHHHHHHHHHHHHHH--TTCCCCHHHHHHTC
T ss_pred HHHHHHHHhhccchh--hcCCCCHHHHHHhC
Confidence 33443 377776653 57899999866543
No 119
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=24.54 E-value=79 Score=19.57 Aligned_cols=31 Identities=29% Similarity=0.436 Sum_probs=19.9
Q ss_pred cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787 42 KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKIM 84 (85)
Q Consensus 42 r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~W~ 84 (85)
+|+.++|.-| ++ ...||+||+..|.+ .|.|+
T Consensus 136 ktpeeiR~~f------~I-~nd~t~eEe~~ir~-----en~W~ 166 (169)
T 3v7d_A 136 RSPEEIRRTF------NI-VNDFTPEEEAAIRR-----ENEWA 166 (169)
T ss_dssp CCHHHHHHHH------TC-CCCCCHHHHHHHHT-----TC---
T ss_pred CCHHHHHHHc------CC-CCCCCHHHHHHHHH-----hcccc
Confidence 4999998877 23 23599999987643 45664
No 120
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=24.34 E-value=64 Score=15.93 Aligned_cols=14 Identities=29% Similarity=0.340 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHh
Q 036787 19 KEEDDKLGAYILKY 32 (85)
Q Consensus 19 ~eED~~L~~~v~~~ 32 (85)
.+||++|.+++..-
T Consensus 26 E~E~~llrKAIaES 39 (46)
T 2rr9_C 26 EEEEELLRKAIAES 39 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46788888887653
No 121
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=24.07 E-value=52 Score=19.49 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=21.5
Q ss_pred hhcCCCCCCCCCHHHHHHHHHHHHHh
Q 036787 54 YLRPDIKHGNYTKEEEDTIIKTRQQH 79 (85)
Q Consensus 54 ~L~~~~~~~~wt~eEd~~L~~~~~~~ 79 (85)
-++|..+-+..|++|-..|...+..|
T Consensus 37 gid~~~r~~~Lt~~ei~~l~~~i~~~ 62 (114)
T 3r8n_M 37 GIAEDVKISELSEGQIDTLRDEVAKF 62 (114)
T ss_dssp TCCTTCCSTTCCHHHHHHHHHHHSSS
T ss_pred CcCcccCcccCCHHHHHHHHHHHHHh
Confidence 46788888999999999998887444
No 122
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=22.80 E-value=55 Score=19.83 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=16.6
Q ss_pred CCCCCHHHHHHHHHHHHHhC
Q 036787 61 HGNYTKEEEDTIIKTRQQHG 80 (85)
Q Consensus 61 ~~~wt~eEd~~L~~~~~~~g 80 (85)
...|+++|-.+|..++...|
T Consensus 130 ~r~w~~~ei~ll~~lA~ql~ 149 (171)
T 4glq_A 130 PRQWQEIEIDQFSELASTGS 149 (171)
T ss_dssp CCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 35899999999998887654
No 123
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=22.41 E-value=73 Score=15.63 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHH
Q 036787 19 KEEDDKLGAYILK 31 (85)
Q Consensus 19 ~eED~~L~~~v~~ 31 (85)
.+||+.|.+++..
T Consensus 29 E~EdellrKAIaE 41 (45)
T 3a1q_C 29 EKEEELLRKAIAE 41 (45)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3567777777654
No 124
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=22.17 E-value=59 Score=19.11 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhCCCCcccccc----chhHHHHHHhhhh
Q 036787 20 EEDDKLGAYILKYGHWNWAQLPK----SGKSCRLRWMNYL 55 (85)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Iar----~~~qcr~rw~~~L 55 (85)
+-|..|+.++...+.-.+..||+ +...|+.+.....
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~ 48 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLK 48 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44667788888888779999985 8888888776654
No 125
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=21.62 E-value=67 Score=19.46 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=18.4
Q ss_pred cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 036787 42 KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIK 74 (85)
Q Consensus 42 r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~ 74 (85)
+|+.++|..| ++ ...||+||+..|.+
T Consensus 129 kt~eeir~~f------~I-~~d~t~eEe~~ir~ 154 (159)
T 2ast_A 129 KTPEEIRKTF------NI-KNDFTEEEEAQVRK 154 (159)
T ss_dssp CCHHHHHHHT------TC-CCCSCTTHHHHHHH
T ss_pred CCHHHHHHHc------CC-CCCCCHHHHHHHHH
Confidence 4888888887 22 24599999877643
Done!