BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036788
         (352 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3F0W|A Chain A, Human Numb-Like Protein, Phosphotyrosine Interaction
           Domain
          Length = 168

 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)

Query: 186 ESAINKLKRIPNLEIQKVLKISFDGL---DDEEKNILLD 221
           E A+ KLK +    ++ VL +S DGL   DD+ K++L+D
Sbjct: 64  EDAVKKLKAMGRKSVKSVLWVSADGLRVVDDKTKDLLVD 102


>pdb|1ZRL|A Chain A, Crystal Structure Of Eba-175 Region Ii (Rii)
 pdb|1ZRO|A Chain A, Crystal Structure Of Eba-175 Region Ii (Rii) Crystallized
           In The Presence Of (Alpha)2,3-Sialyllactose
 pdb|1ZRO|B Chain B, Crystal Structure Of Eba-175 Region Ii (Rii) Crystallized
           In The Presence Of (Alpha)2,3-Sialyllactose
          Length = 602

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 92  RRPGGLGCLQQILLSKLLQEKNAILDIALSFRRLSSRKFLIVLDDETC------FKQIKS 145
           R+   LG + +I    LL  K  IL IA+   R+  RK+    D E C      F  I+ 
Sbjct: 349 RQELCLGNIDRIYDKNLLMIKEHILAIAIYESRILKRKYKNKDDKEVCKIINKTFADIRD 408

Query: 146 LIGSHGF-EELSSR 158
           +IG   +  +LS+R
Sbjct: 409 IIGGTDYWNDLSNR 422


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,855,332
Number of Sequences: 62578
Number of extensions: 320293
Number of successful extensions: 781
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 781
Number of HSP's gapped (non-prelim): 6
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)