Query 036788
Match_columns 352
No_of_seqs 291 out of 2280
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:30:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2.5E-50 5.4E-55 425.5 35.6 344 1-346 159-568 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 1.5E-48 3.2E-53 394.7 25.5 309 30-345 161-580 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 6.5E-35 1.4E-39 265.6 14.5 210 32-246 1-284 (287)
4 PRK04841 transcriptional regul 99.6 1.1E-12 2.5E-17 137.5 24.9 244 21-282 9-335 (903)
5 PRK00411 cdc6 cell division co 99.3 8.3E-10 1.8E-14 105.0 20.5 115 20-140 24-150 (394)
6 TIGR00635 ruvB Holliday juncti 99.2 2.2E-10 4.8E-15 105.1 15.5 217 28-261 5-289 (305)
7 PRK00080 ruvB Holliday junctio 99.2 2.2E-10 4.8E-15 106.1 13.7 222 24-261 23-310 (328)
8 COG3899 Predicted ATPase [Gene 99.2 3.3E-10 7.1E-15 116.5 15.3 253 28-280 1-387 (849)
9 COG2909 MalT ATP-dependent tra 99.1 9.7E-09 2.1E-13 101.6 20.1 244 22-283 15-342 (894)
10 COG3903 Predicted ATPase [Gene 99.0 8.8E-10 1.9E-14 101.0 8.2 228 49-282 13-317 (414)
11 TIGR02928 orc1/cdc6 family rep 98.9 7.4E-09 1.6E-13 97.5 11.4 115 20-140 9-141 (365)
12 TIGR03015 pepcterm_ATPase puta 98.9 1.1E-07 2.4E-12 85.6 16.5 85 50-140 43-135 (269)
13 PF01637 Arch_ATPase: Archaeal 98.8 6E-09 1.3E-13 91.3 4.9 55 29-85 1-55 (234)
14 PF13191 AAA_16: AAA ATPase do 98.7 2.1E-08 4.5E-13 84.8 6.7 50 28-77 1-51 (185)
15 COG2256 MGS1 ATPase related to 98.7 7E-07 1.5E-11 81.9 16.3 97 28-148 25-126 (436)
16 PTZ00202 tuzin; Provisional 98.7 3E-07 6.6E-12 85.7 13.0 102 22-135 258-368 (550)
17 PF05496 RuvB_N: Holliday junc 98.6 2.4E-07 5.2E-12 79.3 10.3 52 26-78 24-78 (233)
18 COG1474 CDC6 Cdc6-related prot 98.6 6E-07 1.3E-11 83.8 11.2 115 20-140 11-135 (366)
19 PF13401 AAA_22: AAA domain; P 98.5 3.4E-07 7.4E-12 72.8 6.8 86 50-140 4-99 (131)
20 PRK13342 recombination factor 98.5 7.7E-06 1.7E-10 78.3 17.0 49 28-78 13-64 (413)
21 PTZ00112 origin recognition co 98.4 1.5E-06 3.2E-11 87.4 11.2 114 21-140 750-881 (1164)
22 PF05729 NACHT: NACHT domain 98.4 8.1E-07 1.8E-11 73.4 7.5 88 51-142 1-95 (166)
23 cd00009 AAA The AAA+ (ATPases 98.4 2.4E-06 5.2E-11 68.6 9.9 54 30-85 1-54 (151)
24 PRK09376 rho transcription ter 98.4 8.2E-07 1.8E-11 82.3 7.3 87 51-142 170-270 (416)
25 PRK12323 DNA polymerase III su 98.3 4.8E-05 1E-09 75.1 18.3 46 28-74 17-62 (700)
26 PRK07003 DNA polymerase III su 98.3 3.5E-05 7.6E-10 77.0 17.2 55 15-74 8-62 (830)
27 cd01128 rho_factor Transcripti 98.3 1.8E-06 3.8E-11 76.4 7.5 88 50-140 16-115 (249)
28 PF14516 AAA_35: AAA-like doma 98.3 0.00011 2.3E-09 68.2 19.1 221 28-268 12-321 (331)
29 COG2255 RuvB Holliday junction 98.2 9.2E-05 2E-09 65.2 15.6 50 28-77 27-79 (332)
30 PRK10865 protein disaggregatio 98.2 1.4E-05 3E-10 83.0 11.8 47 28-76 179-225 (857)
31 TIGR00767 rho transcription te 98.2 6.6E-06 1.4E-10 76.7 8.4 89 51-142 169-269 (415)
32 TIGR02639 ClpA ATP-dependent C 98.2 1.4E-05 3.1E-10 81.8 11.3 47 28-76 183-229 (731)
33 PRK14963 DNA polymerase III su 98.1 0.00022 4.7E-09 69.7 18.5 47 28-75 15-61 (504)
34 TIGR03345 VI_ClpV1 type VI sec 98.1 2.5E-05 5.5E-10 80.9 12.2 47 28-76 188-234 (852)
35 PRK14949 DNA polymerase III su 98.1 0.00025 5.5E-09 72.4 18.6 57 14-75 7-63 (944)
36 PRK14960 DNA polymerase III su 98.1 0.00025 5.5E-09 70.2 17.4 46 28-74 16-61 (702)
37 PF13173 AAA_14: AAA domain 98.1 2.3E-05 5E-10 62.2 8.2 78 51-147 3-80 (128)
38 CHL00095 clpC Clp protease ATP 98.1 3.6E-05 7.7E-10 79.9 11.8 46 28-75 180-225 (821)
39 PRK14961 DNA polymerase III su 98.0 0.00021 4.6E-09 67.2 15.9 47 28-75 17-63 (363)
40 KOG2028 ATPase related to the 98.0 1.6E-05 3.4E-10 72.1 7.6 101 28-148 139-244 (554)
41 TIGR03346 chaperone_ClpB ATP-d 98.0 3.4E-05 7.3E-10 80.3 11.2 47 28-76 174-220 (852)
42 TIGR03420 DnaA_homol_Hda DnaA 98.0 2.2E-05 4.8E-10 68.6 8.4 56 28-85 16-73 (226)
43 PRK14956 DNA polymerase III su 98.0 0.00055 1.2E-08 65.7 18.2 47 28-75 19-65 (484)
44 PRK08691 DNA polymerase III su 98.0 0.00042 9.1E-09 69.2 17.9 46 28-74 17-62 (709)
45 KOG2543 Origin recognition com 98.0 3.5E-05 7.5E-10 70.4 9.3 109 28-144 7-131 (438)
46 PRK14958 DNA polymerase III su 98.0 0.00047 1E-08 67.5 18.0 46 28-74 17-62 (509)
47 PRK04195 replication factor C 98.0 2.1E-05 4.5E-10 76.9 8.5 48 28-75 15-64 (482)
48 KOG0991 Replication factor C, 98.0 0.00011 2.4E-09 62.8 11.6 97 28-140 28-125 (333)
49 PRK06893 DNA replication initi 98.0 2.7E-05 6E-10 68.3 8.2 36 50-85 39-74 (229)
50 KOG0744 AAA+-type ATPase [Post 98.0 2.6E-05 5.7E-10 69.7 7.9 100 50-160 177-282 (423)
51 PRK14951 DNA polymerase III su 98.0 0.0012 2.7E-08 65.7 20.2 55 15-74 8-62 (618)
52 PRK00440 rfc replication facto 97.9 0.00042 9.2E-09 63.8 15.8 47 28-76 18-64 (319)
53 PLN03025 replication factor C 97.9 3.1E-05 6.7E-10 71.6 8.0 46 28-75 14-59 (319)
54 PRK13341 recombination factor 97.9 3.6E-05 7.8E-10 78.0 8.3 49 28-78 29-80 (725)
55 PRK07994 DNA polymerase III su 97.9 0.00022 4.9E-09 71.1 13.2 56 14-74 7-62 (647)
56 PF00004 AAA: ATPase family as 97.9 6.2E-05 1.3E-09 59.6 7.5 23 53-75 1-23 (132)
57 PRK05896 DNA polymerase III su 97.9 0.0019 4E-08 63.9 19.0 46 28-74 17-62 (605)
58 PRK14964 DNA polymerase III su 97.8 0.002 4.3E-08 62.5 18.7 46 28-74 14-59 (491)
59 PRK14962 DNA polymerase III su 97.8 0.00012 2.7E-09 70.8 10.3 56 14-74 5-60 (472)
60 PF05621 TniB: Bacterial TniB 97.8 0.00058 1.3E-08 61.4 13.6 107 28-139 35-156 (302)
61 PRK11331 5-methylcytosine-spec 97.8 8.4E-05 1.8E-09 70.5 8.4 102 28-140 176-284 (459)
62 PRK14969 DNA polymerase III su 97.8 0.00046 1E-08 67.9 13.9 46 28-74 17-62 (527)
63 TIGR01242 26Sp45 26S proteasom 97.8 5.5E-05 1.2E-09 71.2 7.2 50 28-77 123-183 (364)
64 cd01133 F1-ATPase_beta F1 ATP 97.8 0.00015 3.3E-09 64.6 9.4 88 50-140 69-175 (274)
65 PRK12377 putative replication 97.8 0.00017 3.7E-09 63.8 9.7 73 50-138 101-173 (248)
66 PRK14957 DNA polymerase III su 97.8 0.00037 7.9E-09 68.4 12.5 47 28-75 17-63 (546)
67 PRK03992 proteasome-activating 97.8 7.4E-05 1.6E-09 70.9 7.4 49 28-76 132-191 (389)
68 TIGR03689 pup_AAA proteasome A 97.7 6E-05 1.3E-09 73.1 6.6 50 28-77 183-243 (512)
69 PRK14952 DNA polymerase III su 97.7 0.0029 6.2E-08 62.8 18.4 47 28-75 14-60 (584)
70 PRK08116 hypothetical protein; 97.7 0.00032 7E-09 63.0 10.9 74 51-138 115-188 (268)
71 smart00382 AAA ATPases associa 97.7 0.00012 2.7E-09 58.0 7.5 35 51-85 3-37 (148)
72 PRK14955 DNA polymerase III su 97.7 0.0024 5.2E-08 60.9 17.3 47 28-75 17-63 (397)
73 PRK06645 DNA polymerase III su 97.7 0.00048 1E-08 67.1 12.7 46 28-74 22-67 (507)
74 PRK12608 transcription termina 97.7 0.0002 4.3E-09 66.5 9.3 102 36-141 120-233 (380)
75 PRK07940 DNA polymerase III su 97.7 0.00078 1.7E-08 63.8 13.5 47 28-74 6-60 (394)
76 PRK07471 DNA polymerase III su 97.7 0.0025 5.4E-08 59.8 16.6 46 28-74 20-65 (365)
77 PRK08727 hypothetical protein; 97.7 0.00026 5.6E-09 62.3 9.2 56 28-85 20-76 (233)
78 TIGR02881 spore_V_K stage V sp 97.7 0.00013 2.8E-09 65.4 7.1 48 28-75 7-67 (261)
79 PRK00149 dnaA chromosomal repl 97.6 0.00036 7.9E-09 67.6 10.4 94 29-139 125-222 (450)
80 KOG0989 Replication factor C, 97.6 0.00042 9.2E-09 61.7 9.7 63 22-87 32-96 (346)
81 PHA02544 44 clamp loader, smal 97.6 0.00013 2.9E-09 67.2 7.0 50 24-75 19-68 (316)
82 PF00308 Bac_DnaA: Bacterial d 97.6 0.00047 1E-08 60.0 10.0 96 28-140 10-109 (219)
83 PRK14088 dnaA chromosomal repl 97.6 0.00041 8.8E-09 66.9 10.4 74 50-139 130-205 (440)
84 PRK07952 DNA replication prote 97.6 0.00042 9.1E-09 61.1 9.6 89 36-139 85-173 (244)
85 smart00763 AAA_PrkA PrkA AAA d 97.6 0.0001 2.2E-09 68.1 5.6 49 28-76 52-104 (361)
86 PRK05564 DNA polymerase III su 97.6 0.0015 3.3E-08 60.1 13.4 46 28-74 5-50 (313)
87 PF13207 AAA_17: AAA domain; P 97.6 6.6E-05 1.4E-09 58.7 3.7 23 52-74 1-23 (121)
88 PRK14950 DNA polymerase III su 97.6 0.0046 9.9E-08 61.9 17.5 47 28-75 17-63 (585)
89 PRK11034 clpA ATP-dependent Cl 97.6 0.00022 4.8E-09 72.7 8.3 45 28-74 187-231 (758)
90 KOG2227 Pre-initiation complex 97.6 0.00052 1.1E-08 64.5 9.8 108 28-140 151-268 (529)
91 TIGR02397 dnaX_nterm DNA polym 97.6 0.0022 4.7E-08 60.1 14.4 47 28-75 15-61 (355)
92 PRK07764 DNA polymerase III su 97.6 0.005 1.1E-07 63.6 17.8 46 28-74 16-61 (824)
93 TIGR00362 DnaA chromosomal rep 97.6 0.00064 1.4E-08 65.0 10.8 73 50-139 136-210 (405)
94 PRK08118 topology modulation p 97.5 0.00027 5.9E-09 58.8 7.1 34 51-84 2-38 (167)
95 KOG0733 Nuclear AAA ATPase (VC 97.5 0.00026 5.6E-09 68.5 7.7 91 28-138 191-292 (802)
96 PF05673 DUF815: Protein of un 97.5 0.00034 7.4E-09 60.9 7.7 50 28-77 28-79 (249)
97 PRK09361 radB DNA repair and r 97.5 0.0005 1.1E-08 60.1 8.9 48 38-85 11-58 (225)
98 PRK09111 DNA polymerase III su 97.5 0.0093 2E-07 59.5 18.6 47 28-75 25-71 (598)
99 COG1618 Predicted nucleotide k 97.5 0.00012 2.6E-09 59.1 4.2 38 51-88 6-45 (179)
100 PRK08903 DnaA regulatory inact 97.5 0.00029 6.2E-09 61.7 7.1 65 19-85 11-77 (227)
101 PRK06696 uridine kinase; Valid 97.5 0.00022 4.9E-09 62.3 6.3 46 32-77 3-49 (223)
102 PF04665 Pox_A32: Poxvirus A32 97.5 0.00033 7E-09 61.3 7.1 35 51-85 14-48 (241)
103 PRK05642 DNA replication initi 97.5 0.00062 1.3E-08 59.9 8.9 35 51-85 46-80 (234)
104 PRK12402 replication factor C 97.5 0.00015 3.2E-09 67.5 5.1 47 28-76 16-62 (337)
105 PHA00729 NTP-binding motif con 97.5 0.0011 2.4E-08 57.4 10.0 28 48-75 15-42 (226)
106 PRK07261 topology modulation p 97.5 0.00065 1.4E-08 56.7 8.3 23 52-74 2-24 (171)
107 COG1222 RPT1 ATP-dependent 26S 97.4 0.00053 1.2E-08 62.4 8.0 93 28-140 152-256 (406)
108 PRK07667 uridine kinase; Provi 97.4 0.00039 8.4E-09 59.3 6.8 41 36-76 3-43 (193)
109 PRK06921 hypothetical protein; 97.4 0.00095 2.1E-08 59.9 9.6 36 50-85 117-153 (266)
110 TIGR00678 holB DNA polymerase 97.4 0.0043 9.3E-08 52.6 12.9 26 50-75 14-39 (188)
111 PRK14953 DNA polymerase III su 97.4 0.021 4.6E-07 55.7 19.0 46 28-74 17-62 (486)
112 PRK08939 primosomal protein Dn 97.4 0.0014 3E-08 60.0 10.2 91 31-138 135-227 (306)
113 PRK14087 dnaA chromosomal repl 97.4 0.0011 2.3E-08 64.1 9.7 75 50-139 141-217 (450)
114 PRK14959 DNA polymerase III su 97.4 0.0049 1.1E-07 61.3 14.4 46 28-74 17-62 (624)
115 PRK08181 transposase; Validate 97.4 0.00084 1.8E-08 60.1 8.2 71 51-138 107-177 (269)
116 PRK06647 DNA polymerase III su 97.4 0.027 5.8E-07 56.0 19.4 46 28-74 17-62 (563)
117 PRK14965 DNA polymerase III su 97.4 0.027 5.8E-07 56.3 19.6 46 28-74 17-62 (576)
118 PRK06526 transposase; Provisio 97.3 0.00054 1.2E-08 61.0 6.9 28 50-77 98-125 (254)
119 TIGR02237 recomb_radB DNA repa 97.3 0.00098 2.1E-08 57.5 8.4 43 43-85 5-47 (209)
120 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.0016 3.6E-08 57.2 9.9 47 39-85 8-60 (235)
121 PRK05563 DNA polymerase III su 97.3 0.0076 1.7E-07 59.9 15.5 46 28-74 17-62 (559)
122 PF01695 IstB_IS21: IstB-like 97.3 0.00068 1.5E-08 57.0 6.8 36 50-85 47-82 (178)
123 PRK08451 DNA polymerase III su 97.3 0.023 4.9E-07 55.8 18.1 46 28-74 15-60 (535)
124 cd01394 radB RadB. The archaea 97.3 0.0028 6E-08 55.1 10.8 48 38-85 7-54 (218)
125 PTZ00454 26S protease regulato 97.3 0.0011 2.4E-08 62.9 8.8 50 28-77 146-206 (398)
126 PRK09183 transposase/IS protei 97.3 0.0013 2.9E-08 58.7 8.8 26 51-76 103-128 (259)
127 cd01393 recA_like RecA is a b 97.3 0.0026 5.6E-08 55.5 10.6 48 38-85 7-60 (226)
128 PLN00020 ribulose bisphosphate 97.3 0.0012 2.5E-08 61.1 8.3 30 48-77 146-175 (413)
129 COG0466 Lon ATP-dependent Lon 97.3 0.00034 7.4E-09 69.0 4.8 51 28-78 324-378 (782)
130 PRK14970 DNA polymerase III su 97.2 0.0022 4.7E-08 60.5 10.1 47 28-75 18-64 (367)
131 cd01131 PilT Pilus retraction 97.2 0.0011 2.3E-08 56.8 7.1 88 51-144 2-90 (198)
132 PRK10865 protein disaggregatio 97.2 0.0024 5.2E-08 66.6 10.4 49 28-76 569-624 (857)
133 KOG1969 DNA replication checkp 97.2 0.0016 3.4E-08 64.5 8.3 73 48-139 324-398 (877)
134 PRK08084 DNA replication initi 97.2 0.0014 3E-08 57.8 7.4 56 28-85 24-80 (235)
135 PRK07133 DNA polymerase III su 97.2 0.0082 1.8E-07 60.7 13.6 46 28-74 19-64 (725)
136 KOG0729 26S proteasome regulat 97.2 0.0015 3.2E-08 57.2 7.2 91 28-138 178-280 (435)
137 PRK15455 PrkA family serine pr 97.2 0.00055 1.2E-08 66.7 5.1 50 28-77 77-130 (644)
138 TIGR02639 ClpA ATP-dependent C 97.2 0.0021 4.6E-08 66.0 9.7 48 28-75 455-509 (731)
139 TIGR00064 ftsY signal recognit 97.1 0.0019 4.1E-08 58.2 8.2 37 49-85 71-107 (272)
140 PRK05541 adenylylsulfate kinas 97.1 0.00065 1.4E-08 56.9 4.9 36 50-85 7-42 (176)
141 PF13238 AAA_18: AAA domain; P 97.1 0.0004 8.7E-09 54.6 3.4 22 53-74 1-22 (129)
142 PRK10463 hydrogenase nickel in 97.1 0.0027 5.8E-08 57.2 8.9 36 48-83 102-137 (290)
143 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0022 4.7E-08 67.0 9.6 50 28-77 566-622 (852)
144 TIGR01241 FtsH_fam ATP-depende 97.1 0.0011 2.3E-08 65.1 6.9 48 28-75 56-113 (495)
145 PRK14948 DNA polymerase III su 97.1 0.04 8.7E-07 55.4 18.1 47 28-75 17-63 (620)
146 PRK14974 cell division protein 97.1 0.013 2.7E-07 54.3 13.4 29 49-77 139-167 (336)
147 PRK12724 flagellar biosynthesi 97.1 0.0041 8.9E-08 58.8 10.2 25 50-74 223-247 (432)
148 PF00448 SRP54: SRP54-type pro 97.1 0.0026 5.7E-08 54.3 8.2 84 50-137 1-92 (196)
149 PRK12422 chromosomal replicati 97.1 0.0022 4.7E-08 61.8 8.6 72 51-139 142-213 (445)
150 KOG0735 AAA+-type ATPase [Post 97.1 0.0034 7.4E-08 62.0 9.8 74 50-139 431-505 (952)
151 CHL00176 ftsH cell division pr 97.1 0.0012 2.7E-08 66.2 7.1 48 28-75 184-241 (638)
152 CHL00181 cbbX CbbX; Provisiona 97.1 0.0036 7.7E-08 56.8 9.4 48 28-75 24-84 (287)
153 COG0542 clpA ATP-binding subun 97.1 0.0029 6.4E-08 63.9 9.4 109 28-147 492-614 (786)
154 CHL00095 clpC Clp protease ATP 97.1 0.0018 4E-08 67.4 8.3 103 28-139 510-622 (821)
155 cd01120 RecA-like_NTPases RecA 97.1 0.0025 5.4E-08 52.0 7.7 34 52-85 1-34 (165)
156 PF00485 PRK: Phosphoribulokin 97.1 0.00061 1.3E-08 58.1 3.9 26 52-77 1-26 (194)
157 TIGR01243 CDC48 AAA family ATP 97.0 0.0019 4.2E-08 66.5 8.1 49 28-76 179-238 (733)
158 PRK11889 flhF flagellar biosyn 97.0 0.0046 9.9E-08 57.9 9.6 29 49-77 240-268 (436)
159 PRK00771 signal recognition pa 97.0 0.0099 2.1E-07 57.0 12.3 71 4-77 42-122 (437)
160 PRK06835 DNA replication prote 97.0 0.0024 5.2E-08 59.0 7.8 35 51-85 184-218 (329)
161 TIGR03345 VI_ClpV1 type VI sec 97.0 0.0025 5.3E-08 66.4 8.8 49 28-76 567-622 (852)
162 PF01583 APS_kinase: Adenylyls 97.0 0.0012 2.6E-08 53.9 5.0 35 51-85 3-37 (156)
163 TIGR02238 recomb_DMC1 meiotic 97.0 0.0097 2.1E-07 54.6 11.6 67 37-109 83-155 (313)
164 COG3267 ExeA Type II secretory 97.0 0.023 4.9E-07 49.8 13.0 86 47-138 48-141 (269)
165 TIGR02880 cbbX_cfxQ probable R 97.0 0.0031 6.6E-08 57.2 8.2 48 28-75 23-83 (284)
166 PRK13531 regulatory ATPase Rav 97.0 0.0018 4E-08 62.2 6.8 45 28-76 21-65 (498)
167 COG0470 HolB ATPase involved i 97.0 0.0063 1.4E-07 56.1 10.2 49 28-76 2-50 (325)
168 PTZ00301 uridine kinase; Provi 97.0 0.0011 2.4E-08 57.2 4.7 29 50-78 3-31 (210)
169 KOG2004 Mitochondrial ATP-depe 97.0 0.00086 1.9E-08 66.1 4.4 51 28-78 412-466 (906)
170 TIGR02903 spore_lon_C ATP-depe 97.0 0.0017 3.7E-08 65.2 6.7 45 28-74 155-199 (615)
171 PF07726 AAA_3: ATPase family 96.9 0.00053 1.2E-08 53.6 2.3 28 53-80 2-29 (131)
172 cd01121 Sms Sms (bacterial rad 96.9 0.005 1.1E-07 57.9 9.2 95 37-139 69-169 (372)
173 PRK14971 DNA polymerase III su 96.9 0.076 1.6E-06 53.4 18.1 46 28-74 18-63 (614)
174 PRK04301 radA DNA repair and r 96.9 0.0078 1.7E-07 55.5 10.4 49 37-85 89-143 (317)
175 KOG1514 Origin recognition com 96.9 0.02 4.3E-07 56.7 13.3 111 24-138 394-518 (767)
176 PRK14086 dnaA chromosomal repl 96.9 0.0063 1.4E-07 60.3 10.1 72 51-139 315-388 (617)
177 PRK08233 hypothetical protein; 96.9 0.00081 1.8E-08 56.5 3.6 26 50-75 3-28 (182)
178 PF13671 AAA_33: AAA domain; P 96.9 0.00088 1.9E-08 53.9 3.5 24 52-75 1-24 (143)
179 PRK06762 hypothetical protein; 96.9 0.00093 2E-08 55.4 3.8 25 50-74 2-26 (166)
180 TIGR03499 FlhF flagellar biosy 96.9 0.02 4.3E-07 51.9 12.6 28 49-76 193-220 (282)
181 COG4088 Predicted nucleotide k 96.9 0.0024 5.3E-08 53.8 6.0 27 51-77 2-28 (261)
182 cd00983 recA RecA is a bacter 96.9 0.0053 1.1E-07 56.4 8.8 50 36-85 40-90 (325)
183 PRK03839 putative kinase; Prov 96.9 0.00088 1.9E-08 56.4 3.5 24 52-75 2-25 (180)
184 PF08433 KTI12: Chromatin asso 96.9 0.0031 6.7E-08 56.6 7.1 26 51-76 2-27 (270)
185 COG1484 DnaC DNA replication p 96.9 0.0092 2E-07 53.1 10.0 74 49-138 104-177 (254)
186 PRK05480 uridine/cytidine kina 96.9 0.0012 2.5E-08 57.1 4.1 27 48-74 4-30 (209)
187 cd02019 NK Nucleoside/nucleoti 96.9 0.00099 2.1E-08 46.5 3.0 23 52-74 1-23 (69)
188 cd03115 SRP The signal recogni 96.8 0.0051 1.1E-07 51.3 7.7 26 52-77 2-27 (173)
189 PTZ00361 26 proteosome regulat 96.8 0.0015 3.4E-08 62.5 5.0 51 28-78 184-245 (438)
190 PRK04040 adenylate kinase; Pro 96.8 0.0013 2.8E-08 55.8 4.1 25 51-75 3-27 (188)
191 PRK09270 nucleoside triphospha 96.8 0.0022 4.7E-08 56.3 5.6 31 47-77 30-60 (229)
192 PRK06547 hypothetical protein; 96.8 0.0021 4.6E-08 53.7 5.2 28 47-74 12-39 (172)
193 PRK14954 DNA polymerase III su 96.8 0.0018 4E-08 64.6 5.6 57 13-74 6-62 (620)
194 PRK14722 flhF flagellar biosyn 96.8 0.007 1.5E-07 56.7 9.0 84 50-138 137-225 (374)
195 PRK00625 shikimate kinase; Pro 96.8 0.0011 2.5E-08 55.3 3.4 24 52-75 2-25 (173)
196 COG0467 RAD55 RecA-superfamily 96.8 0.0052 1.1E-07 55.0 7.9 44 42-85 15-58 (260)
197 PRK11034 clpA ATP-dependent Cl 96.8 0.0041 8.8E-08 63.7 7.9 48 28-75 459-513 (758)
198 PRK12726 flagellar biosynthesi 96.8 0.028 6E-07 52.6 12.6 37 49-85 205-241 (407)
199 TIGR02902 spore_lonB ATP-depen 96.8 0.0029 6.2E-08 62.5 6.6 45 28-74 66-110 (531)
200 PRK09354 recA recombinase A; P 96.8 0.0082 1.8E-07 55.6 9.0 50 36-85 45-95 (349)
201 PRK00131 aroK shikimate kinase 96.8 0.0013 2.9E-08 54.6 3.6 26 50-75 4-29 (175)
202 PRK09280 F0F1 ATP synthase sub 96.8 0.0059 1.3E-07 58.5 8.2 88 50-140 144-250 (463)
203 COG0572 Udk Uridine kinase [Nu 96.7 0.0021 4.6E-08 55.1 4.6 30 48-77 6-35 (218)
204 PRK06620 hypothetical protein; 96.7 0.0029 6.4E-08 54.8 5.6 56 19-74 9-68 (214)
205 PF00006 ATP-synt_ab: ATP synt 96.7 0.0042 9.1E-08 53.7 6.4 80 51-138 16-115 (215)
206 PF00910 RNA_helicase: RNA hel 96.7 0.00099 2.1E-08 51.0 2.3 25 53-77 1-25 (107)
207 TIGR01243 CDC48 AAA family ATP 96.7 0.0037 8E-08 64.4 7.1 50 28-77 454-514 (733)
208 TIGR01425 SRP54_euk signal rec 96.7 0.025 5.5E-07 53.9 12.1 28 50-77 100-127 (429)
209 KOG0733 Nuclear AAA ATPase (VC 96.7 0.003 6.6E-08 61.3 5.9 29 50-78 545-573 (802)
210 COG2607 Predicted ATPase (AAA+ 96.7 0.0091 2E-07 51.7 8.1 53 28-80 61-115 (287)
211 PLN03187 meiotic recombination 96.7 0.015 3.2E-07 54.0 10.2 67 37-109 113-185 (344)
212 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0017 3.7E-08 54.8 3.8 26 49-74 2-27 (188)
213 TIGR00416 sms DNA repair prote 96.7 0.0081 1.8E-07 58.1 8.8 96 36-139 80-181 (454)
214 PRK06217 hypothetical protein; 96.7 0.011 2.3E-07 50.0 8.5 24 52-75 3-26 (183)
215 PRK05703 flhF flagellar biosyn 96.7 0.029 6.2E-07 53.8 12.3 36 50-85 221-258 (424)
216 PRK12597 F0F1 ATP synthase sub 96.7 0.0078 1.7E-07 57.9 8.3 87 50-140 143-249 (461)
217 PF08423 Rad51: Rad51; InterP 96.7 0.0071 1.5E-07 53.9 7.7 64 38-107 26-95 (256)
218 TIGR02236 recomb_radA DNA repa 96.7 0.015 3.1E-07 53.6 10.0 49 37-85 82-136 (310)
219 COG4608 AppF ABC-type oligopep 96.7 0.006 1.3E-07 53.9 6.9 88 50-140 39-139 (268)
220 TIGR00150 HI0065_YjeE ATPase, 96.6 0.003 6.4E-08 50.2 4.6 40 35-74 7-46 (133)
221 PRK13947 shikimate kinase; Pro 96.6 0.0016 3.5E-08 54.2 3.3 26 52-77 3-28 (171)
222 TIGR00235 udk uridine kinase. 96.6 0.0023 5.1E-08 55.1 4.4 27 49-75 5-31 (207)
223 PRK05439 pantothenate kinase; 96.6 0.006 1.3E-07 55.7 7.1 29 48-76 84-112 (311)
224 TIGR01039 atpD ATP synthase, F 96.6 0.014 3E-07 55.9 9.7 89 50-141 143-250 (461)
225 PRK10867 signal recognition pa 96.6 0.026 5.7E-07 54.0 11.6 29 49-77 99-127 (433)
226 cd02028 UMPK_like Uridine mono 96.6 0.0027 5.8E-08 53.5 4.4 25 52-76 1-25 (179)
227 COG2812 DnaX DNA polymerase II 96.6 0.055 1.2E-06 52.7 13.8 57 13-74 6-62 (515)
228 COG0055 AtpD F0F1-type ATP syn 96.6 0.0057 1.2E-07 56.1 6.6 105 51-170 148-271 (468)
229 PRK04296 thymidine kinase; Pro 96.6 0.0026 5.6E-08 54.1 4.4 34 51-84 3-36 (190)
230 COG0542 clpA ATP-binding subun 96.6 0.0028 6E-08 64.1 5.1 46 28-75 171-216 (786)
231 PF07728 AAA_5: AAA domain (dy 96.6 0.0016 3.5E-08 52.2 3.0 22 53-74 2-23 (139)
232 cd00227 CPT Chloramphenicol (C 96.6 0.0021 4.6E-08 53.8 3.7 25 51-75 3-27 (175)
233 cd01135 V_A-ATPase_B V/A-type 96.6 0.01 2.2E-07 53.0 8.0 87 50-140 69-178 (276)
234 TIGR01359 UMP_CMP_kin_fam UMP- 96.6 0.0016 3.5E-08 54.8 2.9 23 52-74 1-23 (183)
235 PRK12723 flagellar biosynthesi 96.6 0.026 5.7E-07 53.2 11.2 27 49-75 173-199 (388)
236 TIGR01420 pilT_fam pilus retra 96.6 0.0084 1.8E-07 56.0 7.9 87 50-145 122-212 (343)
237 PF03308 ArgK: ArgK protein; 96.6 0.0038 8.2E-08 54.9 5.0 43 35-77 14-56 (266)
238 PRK00889 adenylylsulfate kinas 96.5 0.004 8.7E-08 52.1 5.0 27 50-76 4-30 (175)
239 COG1066 Sms Predicted ATP-depe 96.5 0.021 4.6E-07 53.2 10.0 94 36-138 79-178 (456)
240 PRK06305 DNA polymerase III su 96.5 0.005 1.1E-07 59.5 6.3 59 11-74 5-63 (451)
241 TIGR00763 lon ATP-dependent pr 96.5 0.0063 1.4E-07 63.0 7.3 51 28-78 321-375 (775)
242 cd02027 APSK Adenosine 5'-phos 96.5 0.0096 2.1E-07 48.5 6.9 24 52-75 1-24 (149)
243 PRK11823 DNA repair protein Ra 96.5 0.015 3.3E-07 56.1 9.4 96 36-139 66-167 (446)
244 PRK12727 flagellar biosynthesi 96.5 0.027 5.9E-07 54.8 10.9 28 50-77 350-377 (559)
245 PRK09087 hypothetical protein; 96.5 0.0043 9.3E-08 54.3 5.1 25 50-74 44-68 (226)
246 PF03266 NTPase_1: NTPase; In 96.5 0.0022 4.7E-08 53.3 3.1 24 53-76 2-25 (168)
247 PRK10416 signal recognition pa 96.5 0.0078 1.7E-07 55.4 7.0 29 49-77 113-141 (318)
248 PF13086 AAA_11: AAA domain; P 96.5 0.0054 1.2E-07 53.4 5.7 36 35-74 6-41 (236)
249 PRK12678 transcription termina 96.5 0.0069 1.5E-07 59.1 6.8 89 51-142 417-517 (672)
250 PRK03846 adenylylsulfate kinas 96.5 0.0049 1.1E-07 52.7 5.3 37 48-84 22-58 (198)
251 COG1373 Predicted ATPase (AAA+ 96.5 0.014 2.9E-07 55.7 8.7 92 32-147 22-113 (398)
252 cd02020 CMPK Cytidine monophos 96.5 0.0024 5.2E-08 51.5 3.1 24 52-75 1-24 (147)
253 PF06068 TIP49: TIP49 C-termin 96.5 0.0058 1.3E-07 56.4 5.8 56 25-81 23-81 (398)
254 PRK13765 ATP-dependent proteas 96.5 0.0052 1.1E-07 61.6 6.0 78 22-110 27-105 (637)
255 TIGR03878 thermo_KaiC_2 KaiC d 96.5 0.0059 1.3E-07 54.6 5.8 37 49-85 35-71 (259)
256 COG0468 RecA RecA/RadA recombi 96.4 0.041 8.9E-07 49.4 11.0 94 41-140 51-153 (279)
257 PTZ00035 Rad51 protein; Provis 96.4 0.031 6.7E-07 51.9 10.6 39 36-74 104-142 (337)
258 cd02021 GntK Gluconate kinase 96.4 0.0024 5.1E-08 51.9 2.8 23 52-74 1-23 (150)
259 COG0003 ArsA Predicted ATPase 96.4 0.0063 1.4E-07 55.8 5.8 35 50-84 2-36 (322)
260 COG1102 Cmk Cytidylate kinase 96.4 0.0028 6E-08 51.4 3.0 24 52-75 2-25 (179)
261 COG1224 TIP49 DNA helicase TIP 96.4 0.0082 1.8E-07 54.9 6.3 56 23-79 36-94 (450)
262 PF13245 AAA_19: Part of AAA d 96.4 0.017 3.6E-07 41.2 6.7 24 50-73 10-33 (76)
263 COG0593 DnaA ATPase involved i 96.4 0.012 2.6E-07 55.5 7.7 74 49-138 112-185 (408)
264 cd02024 NRK1 Nicotinamide ribo 96.4 0.0026 5.7E-08 53.7 2.9 23 52-74 1-23 (187)
265 TIGR00390 hslU ATP-dependent p 96.4 0.0048 1E-07 58.2 4.9 51 28-78 13-75 (441)
266 PRK09112 DNA polymerase III su 96.4 0.0069 1.5E-07 56.6 5.8 47 28-75 24-70 (351)
267 PRK05707 DNA polymerase III su 96.4 0.094 2E-06 48.6 13.3 25 50-74 22-46 (328)
268 cd00464 SK Shikimate kinase (S 96.3 0.0033 7.2E-08 51.1 3.3 23 53-75 2-24 (154)
269 PF00158 Sigma54_activat: Sigm 96.3 0.0036 7.9E-08 52.0 3.5 45 29-73 1-45 (168)
270 PRK08972 fliI flagellum-specif 96.3 0.0087 1.9E-07 57.0 6.4 84 51-140 163-264 (444)
271 cd01124 KaiC KaiC is a circadi 96.3 0.0048 1E-07 52.0 4.4 33 53-85 2-34 (187)
272 COG1936 Predicted nucleotide k 96.3 0.0029 6.2E-08 51.9 2.8 20 52-71 2-21 (180)
273 cd02023 UMPK Uridine monophosp 96.3 0.0027 5.9E-08 54.3 2.8 23 52-74 1-23 (198)
274 PRK13949 shikimate kinase; Pro 96.3 0.0034 7.4E-08 52.3 3.3 24 52-75 3-26 (169)
275 TIGR00764 lon_rel lon-related 96.3 0.0088 1.9E-07 60.0 6.8 72 28-109 19-91 (608)
276 KOG0734 AAA+-type ATPase conta 96.3 0.0053 1.2E-07 58.8 4.8 47 28-74 305-361 (752)
277 PRK10751 molybdopterin-guanine 96.3 0.0054 1.2E-07 51.0 4.4 29 49-77 5-33 (173)
278 cd02025 PanK Pantothenate kina 96.3 0.003 6.6E-08 55.0 3.0 24 52-75 1-24 (220)
279 TIGR03305 alt_F1F0_F1_bet alte 96.3 0.018 3.9E-07 55.1 8.4 87 50-140 138-244 (449)
280 TIGR02322 phosphon_PhnN phosph 96.3 0.0036 7.8E-08 52.5 3.3 25 51-75 2-26 (179)
281 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.0099 2.2E-07 52.4 6.3 48 38-85 9-56 (237)
282 COG1428 Deoxynucleoside kinase 96.3 0.0037 8E-08 53.1 3.3 26 50-75 4-29 (216)
283 TIGR00959 ffh signal recogniti 96.3 0.072 1.6E-06 51.0 12.4 26 50-75 99-124 (428)
284 TIGR00602 rad24 checkpoint pro 96.3 0.0042 9.2E-08 62.1 4.2 52 23-75 81-135 (637)
285 PTZ00494 tuzin-like protein; P 96.3 0.063 1.4E-06 50.9 11.5 78 24-113 369-447 (664)
286 TIGR02239 recomb_RAD51 DNA rep 96.3 0.028 6E-07 51.8 9.3 38 36-73 82-119 (316)
287 COG1703 ArgK Putative periplas 96.3 0.006 1.3E-07 54.5 4.6 44 36-79 37-80 (323)
288 cd01132 F1_ATPase_alpha F1 ATP 96.3 0.025 5.4E-07 50.5 8.6 84 50-140 69-173 (274)
289 PRK12339 2-phosphoglycerate ki 96.3 0.0045 9.7E-08 52.9 3.8 25 50-74 3-27 (197)
290 PRK07004 replicative DNA helic 96.2 0.049 1.1E-06 52.9 11.2 53 50-109 213-266 (460)
291 PRK13948 shikimate kinase; Pro 96.2 0.0043 9.4E-08 52.3 3.4 27 49-75 9-35 (182)
292 PRK05201 hslU ATP-dependent pr 96.2 0.0068 1.5E-07 57.2 5.0 51 28-78 16-78 (443)
293 PF00625 Guanylate_kin: Guanyl 96.2 0.0049 1.1E-07 52.0 3.7 36 50-85 2-37 (183)
294 PRK13946 shikimate kinase; Pro 96.2 0.0042 9.1E-08 52.5 3.3 26 50-75 10-35 (184)
295 TIGR03574 selen_PSTK L-seryl-t 96.2 0.0053 1.1E-07 54.6 4.1 26 52-77 1-26 (249)
296 PF03205 MobB: Molybdopterin g 96.2 0.0068 1.5E-07 48.8 4.3 35 51-85 1-36 (140)
297 PRK14530 adenylate kinase; Pro 96.2 0.0044 9.5E-08 53.8 3.5 23 52-74 5-27 (215)
298 cd00071 GMPK Guanosine monopho 96.2 0.0036 7.8E-08 50.2 2.7 26 52-77 1-26 (137)
299 PRK13975 thymidylate kinase; P 96.2 0.005 1.1E-07 52.4 3.7 26 51-76 3-28 (196)
300 COG0563 Adk Adenylate kinase a 96.2 0.0044 9.5E-08 52.0 3.2 23 52-74 2-24 (178)
301 PRK06067 flagellar accessory p 96.2 0.022 4.8E-07 50.0 7.8 48 38-85 13-60 (234)
302 PF03215 Rad17: Rad17 cell cyc 96.2 0.006 1.3E-07 59.8 4.5 47 28-74 20-69 (519)
303 PRK14738 gmk guanylate kinase; 96.2 0.0055 1.2E-07 52.8 3.8 28 46-73 9-36 (206)
304 TIGR01650 PD_CobS cobaltochela 96.1 0.014 3.1E-07 53.4 6.5 47 28-78 46-92 (327)
305 PRK08927 fliI flagellum-specif 96.1 0.021 4.6E-07 54.5 8.0 85 50-140 158-260 (442)
306 PRK10536 hypothetical protein; 96.1 0.015 3.2E-07 51.4 6.3 51 28-82 56-108 (262)
307 COG3640 CooC CO dehydrogenase 96.1 0.013 2.7E-07 50.6 5.6 36 52-87 2-37 (255)
308 COG0464 SpoVK ATPases of the A 96.1 0.013 2.7E-07 57.7 6.5 51 28-78 243-304 (494)
309 COG0703 AroK Shikimate kinase 96.1 0.0053 1.2E-07 50.7 3.3 28 51-78 3-30 (172)
310 PRK09435 membrane ATPase/prote 96.1 0.016 3.5E-07 53.5 6.8 42 36-77 42-83 (332)
311 PRK05973 replicative DNA helic 96.1 0.013 2.8E-07 51.4 5.8 36 50-85 64-99 (237)
312 KOG0736 Peroxisome assembly fa 96.1 0.053 1.1E-06 54.5 10.5 93 28-140 673-776 (953)
313 KOG0741 AAA+-type ATPase [Post 96.1 0.012 2.5E-07 56.5 5.8 82 47-150 535-620 (744)
314 TIGR01313 therm_gnt_kin carboh 96.1 0.0041 8.8E-08 51.3 2.6 22 53-74 1-22 (163)
315 PLN02674 adenylate kinase 96.1 0.056 1.2E-06 47.7 9.8 25 50-74 31-55 (244)
316 TIGR02012 tigrfam_recA protein 96.1 0.015 3.2E-07 53.4 6.4 50 36-85 40-90 (321)
317 KOG3347 Predicted nucleotide k 96.1 0.0051 1.1E-07 49.2 2.9 25 50-74 7-31 (176)
318 PRK15453 phosphoribulokinase; 96.1 0.011 2.3E-07 53.0 5.3 29 48-76 3-31 (290)
319 TIGR03881 KaiC_arch_4 KaiC dom 96.1 0.016 3.4E-07 50.7 6.4 48 38-85 8-55 (229)
320 TIGR02640 gas_vesic_GvpN gas v 96.1 0.0092 2E-07 53.5 4.9 36 36-75 11-46 (262)
321 PRK05342 clpX ATP-dependent pr 96.1 0.0099 2.2E-07 56.6 5.4 51 28-78 72-136 (412)
322 PRK04182 cytidylate kinase; Pr 96.1 0.0056 1.2E-07 51.2 3.4 24 52-75 2-25 (180)
323 TIGR00073 hypB hydrogenase acc 96.0 0.01 2.3E-07 51.1 5.1 30 47-76 19-48 (207)
324 COG2019 AdkA Archaeal adenylat 96.0 0.0075 1.6E-07 49.2 3.8 25 50-74 4-28 (189)
325 PF14532 Sigma54_activ_2: Sigm 96.0 0.0028 6.1E-08 50.8 1.4 46 30-75 1-46 (138)
326 KOG1970 Checkpoint RAD17-RFC c 96.0 0.06 1.3E-06 52.1 10.3 210 33-258 88-322 (634)
327 PF06309 Torsin: Torsin; Inte 96.0 0.017 3.6E-07 45.1 5.6 47 28-74 26-77 (127)
328 cd01129 PulE-GspE PulE/GspE Th 96.0 0.06 1.3E-06 48.3 10.0 101 30-144 62-165 (264)
329 PRK05537 bifunctional sulfate 96.0 0.012 2.5E-07 58.6 5.9 49 28-76 370-418 (568)
330 PLN02200 adenylate kinase fami 96.0 0.0067 1.5E-07 53.3 3.8 25 50-74 43-67 (234)
331 PRK14527 adenylate kinase; Pro 96.0 0.0065 1.4E-07 51.6 3.6 27 49-75 5-31 (191)
332 PF02374 ArsA_ATPase: Anion-tr 96.0 0.0097 2.1E-07 54.5 4.9 27 51-77 2-28 (305)
333 KOG1051 Chaperone HSP104 and r 96.0 0.093 2E-06 54.2 12.3 100 28-140 563-672 (898)
334 PF13521 AAA_28: AAA domain; P 96.0 0.006 1.3E-07 50.4 3.2 21 53-73 2-22 (163)
335 COG0714 MoxR-like ATPases [Gen 96.0 0.01 2.3E-07 55.0 5.2 49 28-80 25-73 (329)
336 TIGR03263 guanyl_kin guanylate 96.0 0.0052 1.1E-07 51.5 2.9 24 51-74 2-25 (180)
337 TIGR00041 DTMP_kinase thymidyl 96.0 0.022 4.7E-07 48.4 6.7 26 51-76 4-29 (195)
338 PF12775 AAA_7: P-loop contain 96.0 0.0047 1E-07 55.6 2.6 24 51-74 34-57 (272)
339 CHL00060 atpB ATP synthase CF1 96.0 0.022 4.7E-07 55.0 7.2 87 50-140 161-274 (494)
340 KOG0739 AAA+-type ATPase [Post 96.0 0.03 6.5E-07 50.1 7.4 48 28-75 134-191 (439)
341 PLN02318 phosphoribulokinase/u 96.0 0.0097 2.1E-07 58.5 4.8 35 40-74 55-89 (656)
342 PRK03731 aroL shikimate kinase 96.0 0.0066 1.4E-07 50.5 3.3 24 52-75 4-27 (171)
343 PRK05057 aroK shikimate kinase 96.0 0.0063 1.4E-07 50.8 3.1 25 51-75 5-29 (172)
344 PF07693 KAP_NTPase: KAP famil 95.9 0.036 7.8E-07 51.1 8.5 80 32-112 1-84 (325)
345 TIGR00554 panK_bact pantothena 95.9 0.023 4.9E-07 51.5 6.9 28 48-75 60-87 (290)
346 PRK08149 ATP synthase SpaL; Va 95.9 0.029 6.3E-07 53.5 7.9 85 50-140 151-253 (428)
347 PRK14529 adenylate kinase; Pro 95.9 0.033 7.2E-07 48.4 7.6 86 53-146 3-95 (223)
348 cd01672 TMPK Thymidine monopho 95.9 0.022 4.8E-07 48.3 6.5 25 52-76 2-26 (200)
349 TIGR00750 lao LAO/AO transport 95.9 0.02 4.3E-07 52.4 6.6 41 37-77 21-61 (300)
350 PF08298 AAA_PrkA: PrkA AAA do 95.9 0.0097 2.1E-07 54.7 4.4 50 28-77 62-115 (358)
351 COG1419 FlhF Flagellar GTP-bin 95.9 0.19 4.1E-06 47.2 12.8 25 50-74 203-227 (407)
352 PLN03186 DNA repair protein RA 95.9 0.074 1.6E-06 49.4 10.3 50 36-85 109-164 (342)
353 PRK00300 gmk guanylate kinase; 95.9 0.0066 1.4E-07 52.1 3.2 24 51-74 6-29 (205)
354 PF08477 Miro: Miro-like prote 95.9 0.0076 1.6E-07 46.6 3.2 21 53-73 2-22 (119)
355 PRK14493 putative bifunctional 95.9 0.012 2.5E-07 53.0 4.7 34 51-85 2-35 (274)
356 cd01122 GP4d_helicase GP4d_hel 95.9 0.073 1.6E-06 47.8 10.0 52 50-108 30-82 (271)
357 PRK09519 recA DNA recombinatio 95.9 0.088 1.9E-06 53.9 11.4 124 5-138 10-148 (790)
358 PRK10787 DNA-binding ATP-depen 95.9 0.011 2.4E-07 60.9 5.2 51 28-78 323-377 (784)
359 PRK05800 cobU adenosylcobinami 95.9 0.054 1.2E-06 45.1 8.4 76 52-137 3-85 (170)
360 TIGR03600 phage_DnaB phage rep 95.9 0.1 2.2E-06 50.2 11.5 53 50-109 194-247 (421)
361 PRK04328 hypothetical protein; 95.9 0.019 4.1E-07 51.0 6.0 48 38-85 11-58 (249)
362 PRK13768 GTPase; Provisional 95.9 0.014 3E-07 52.1 5.1 27 51-77 3-29 (253)
363 TIGR00176 mobB molybdopterin-g 95.9 0.011 2.4E-07 48.4 4.2 31 52-82 1-32 (155)
364 PRK14531 adenylate kinase; Pro 95.9 0.0084 1.8E-07 50.6 3.6 24 51-74 3-26 (183)
365 PRK13407 bchI magnesium chelat 95.9 0.0099 2.1E-07 55.0 4.3 45 28-74 9-53 (334)
366 cd01136 ATPase_flagellum-secre 95.9 0.028 6E-07 51.8 7.1 82 51-140 70-171 (326)
367 TIGR02173 cyt_kin_arch cytidyl 95.8 0.0082 1.8E-07 49.8 3.4 23 52-74 2-24 (171)
368 PF09848 DUF2075: Uncharacteri 95.8 0.032 6.9E-07 52.3 7.7 35 51-85 2-38 (352)
369 cd00544 CobU Adenosylcobinamid 95.8 0.05 1.1E-06 45.2 8.1 77 53-138 2-83 (169)
370 PRK14532 adenylate kinase; Pro 95.8 0.0075 1.6E-07 51.1 3.2 22 53-74 3-24 (188)
371 PRK05922 type III secretion sy 95.8 0.044 9.5E-07 52.3 8.6 84 51-140 158-259 (434)
372 PHA02244 ATPase-like protein 95.8 0.01 2.2E-07 55.2 4.2 45 28-76 97-145 (383)
373 KOG1532 GTPase XAB1, interacts 95.8 0.011 2.4E-07 52.0 4.2 40 48-88 17-56 (366)
374 cd01983 Fer4_NifH The Fer4_Nif 95.8 0.012 2.7E-07 43.2 4.0 25 52-76 1-25 (99)
375 TIGR00382 clpX endopeptidase C 95.8 0.014 3.1E-07 55.4 5.2 51 28-78 78-144 (413)
376 cd01428 ADK Adenylate kinase ( 95.8 0.0079 1.7E-07 51.0 3.2 22 53-74 2-23 (194)
377 PRK06002 fliI flagellum-specif 95.8 0.028 6E-07 53.8 7.1 24 50-73 165-188 (450)
378 KOG2228 Origin recognition com 95.8 0.046 9.9E-07 49.8 8.0 107 28-138 25-147 (408)
379 PRK06761 hypothetical protein; 95.8 0.0089 1.9E-07 53.8 3.6 27 51-77 4-30 (282)
380 KOG0728 26S proteasome regulat 95.8 0.055 1.2E-06 47.2 8.2 46 28-73 147-204 (404)
381 cd02034 CooC The accessory pro 95.8 0.025 5.4E-07 43.9 5.7 32 53-84 2-33 (116)
382 COG0529 CysC Adenylylsulfate k 95.8 0.017 3.6E-07 47.7 4.8 32 48-79 21-52 (197)
383 PRK08533 flagellar accessory p 95.8 0.014 3.1E-07 51.1 4.9 38 48-85 22-59 (230)
384 COG1124 DppF ABC-type dipeptid 95.8 0.0093 2E-07 51.7 3.5 26 51-76 34-59 (252)
385 PF13604 AAA_30: AAA domain; P 95.8 0.023 5E-07 48.5 6.0 39 36-77 7-45 (196)
386 PRK06936 type III secretion sy 95.8 0.025 5.4E-07 54.0 6.7 85 50-140 162-264 (439)
387 PF06564 YhjQ: YhjQ protein; 95.8 0.021 4.5E-07 50.2 5.6 35 51-85 2-37 (243)
388 TIGR01287 nifH nitrogenase iro 95.7 0.013 2.8E-07 52.9 4.5 27 51-77 1-27 (275)
389 PRK14737 gmk guanylate kinase; 95.7 0.0097 2.1E-07 50.4 3.4 26 49-74 3-28 (186)
390 PRK10078 ribose 1,5-bisphospho 95.7 0.0085 1.8E-07 50.7 3.0 24 51-74 3-26 (186)
391 PF06745 KaiC: KaiC; InterPro 95.7 0.018 4E-07 50.2 5.2 46 40-85 9-55 (226)
392 PTZ00088 adenylate kinase 1; P 95.7 0.0093 2E-07 52.2 3.3 23 52-74 8-30 (229)
393 TIGR02655 circ_KaiC circadian 95.7 0.023 5.1E-07 55.6 6.3 50 36-85 249-298 (484)
394 COG0378 HypB Ni2+-binding GTPa 95.7 0.018 3.9E-07 48.3 4.6 36 50-85 13-48 (202)
395 PLN02348 phosphoribulokinase 95.6 0.013 2.9E-07 54.8 4.3 30 47-76 46-75 (395)
396 TIGR01041 ATP_syn_B_arch ATP s 95.6 0.07 1.5E-06 51.4 9.2 87 51-140 142-250 (458)
397 PHA02530 pseT polynucleotide k 95.6 0.011 2.3E-07 54.1 3.6 24 51-74 3-26 (300)
398 TIGR02030 BchI-ChlI magnesium 95.6 0.017 3.7E-07 53.5 4.9 45 28-74 5-49 (337)
399 PF03029 ATP_bind_1: Conserved 95.6 0.013 2.8E-07 51.7 3.9 34 55-89 1-34 (238)
400 KOG0731 AAA+-type ATPase conta 95.6 0.027 5.9E-07 56.8 6.5 47 28-74 312-368 (774)
401 PRK12338 hypothetical protein; 95.6 0.012 2.6E-07 53.8 3.7 25 50-74 4-28 (319)
402 PRK13695 putative NTPase; Prov 95.6 0.016 3.5E-07 48.3 4.2 24 52-75 2-25 (174)
403 PRK08769 DNA polymerase III su 95.6 0.41 8.9E-06 44.1 13.6 39 35-74 12-50 (319)
404 TIGR03498 FliI_clade3 flagella 95.6 0.028 6E-07 53.6 6.1 26 50-75 140-165 (418)
405 cd03116 MobB Molybdenum is an 95.6 0.022 4.8E-07 46.8 4.8 27 51-77 2-28 (159)
406 COG0194 Gmk Guanylate kinase [ 95.6 0.017 3.7E-07 48.2 4.1 24 51-74 5-28 (191)
407 KOG0743 AAA+-type ATPase [Post 95.5 0.018 3.9E-07 54.3 4.7 67 50-143 235-301 (457)
408 cd02117 NifH_like This family 95.5 0.019 4.1E-07 49.7 4.6 26 51-76 1-26 (212)
409 KOG0738 AAA+-type ATPase [Post 95.5 0.037 8E-07 51.3 6.5 49 28-76 213-271 (491)
410 PRK08058 DNA polymerase III su 95.5 0.14 3.1E-06 47.4 10.7 46 28-74 6-52 (329)
411 PF01078 Mg_chelatase: Magnesi 95.5 0.022 4.8E-07 48.6 4.8 41 28-72 4-44 (206)
412 TIGR02782 TrbB_P P-type conjug 95.5 0.017 3.6E-07 52.8 4.4 85 51-144 133-220 (299)
413 PRK06851 hypothetical protein; 95.5 0.047 1E-06 51.0 7.4 36 50-85 214-250 (367)
414 COG1763 MobB Molybdopterin-gua 95.5 0.019 4.1E-07 47.1 4.2 35 50-84 2-36 (161)
415 cd03114 ArgK-like The function 95.5 0.02 4.3E-07 46.6 4.3 26 52-77 1-26 (148)
416 TIGR01351 adk adenylate kinase 95.5 0.012 2.5E-07 50.9 3.1 22 53-74 2-23 (210)
417 KOG0727 26S proteasome regulat 95.5 0.027 5.8E-07 49.1 5.2 50 28-77 156-216 (408)
418 TIGR03880 KaiC_arch_3 KaiC dom 95.5 0.034 7.3E-07 48.5 6.0 47 39-85 5-51 (224)
419 PRK09825 idnK D-gluconate kina 95.5 0.013 2.9E-07 49.1 3.3 25 51-75 4-28 (176)
420 PRK00279 adk adenylate kinase; 95.5 0.014 3E-07 50.6 3.5 24 52-75 2-25 (215)
421 PRK08356 hypothetical protein; 95.5 0.014 3.1E-07 49.7 3.6 21 51-71 6-26 (195)
422 COG0237 CoaE Dephospho-CoA kin 95.5 0.014 3E-07 50.0 3.4 23 50-72 2-24 (201)
423 PRK14721 flhF flagellar biosyn 95.5 0.12 2.5E-06 49.4 9.9 25 50-74 191-215 (420)
424 cd00820 PEPCK_HprK Phosphoenol 95.5 0.015 3.1E-07 44.3 3.1 21 51-71 16-36 (107)
425 PRK01184 hypothetical protein; 95.4 0.013 2.9E-07 49.3 3.3 22 51-73 2-23 (184)
426 TIGR03496 FliI_clade1 flagella 95.4 0.048 1E-06 52.0 7.3 25 51-75 138-162 (411)
427 KOG0726 26S proteasome regulat 95.4 0.019 4.1E-07 51.1 4.2 51 28-78 186-247 (440)
428 PRK13230 nitrogenase reductase 95.4 0.022 4.7E-07 51.5 4.8 27 51-77 2-28 (279)
429 KOG1350 F0F1-type ATP synthase 95.4 0.037 8E-07 49.7 6.0 127 28-170 164-321 (521)
430 TIGR03324 alt_F1F0_F1_al alter 95.4 0.066 1.4E-06 51.9 8.2 86 50-140 162-266 (497)
431 PRK14528 adenylate kinase; Pro 95.4 0.015 3.3E-07 49.2 3.5 24 51-74 2-25 (186)
432 PF05970 PIF1: PIF1-like helic 95.4 0.034 7.4E-07 52.3 6.2 36 49-84 21-56 (364)
433 PRK02496 adk adenylate kinase; 95.4 0.016 3.5E-07 48.8 3.7 23 52-74 3-25 (184)
434 cd01134 V_A-ATPase_A V/A-type 95.4 0.11 2.3E-06 48.1 9.1 33 51-85 158-190 (369)
435 cd02022 DPCK Dephospho-coenzym 95.4 0.012 2.6E-07 49.4 2.8 21 52-72 1-21 (179)
436 PRK11608 pspF phage shock prot 95.4 0.015 3.2E-07 53.9 3.6 46 28-73 7-52 (326)
437 PF00406 ADK: Adenylate kinase 95.4 0.013 2.9E-07 47.6 3.0 20 55-74 1-20 (151)
438 smart00072 GuKc Guanylate kina 95.4 0.014 3.1E-07 49.2 3.2 29 51-79 3-31 (184)
439 cd00984 DnaB_C DnaB helicase C 95.4 0.07 1.5E-06 47.0 7.8 51 50-107 13-64 (242)
440 cd02029 PRK_like Phosphoribulo 95.4 0.022 4.7E-07 50.7 4.4 26 52-77 1-26 (277)
441 CHL00059 atpA ATP synthase CF1 95.4 0.059 1.3E-06 52.0 7.6 86 50-140 141-245 (485)
442 PRK00698 tmk thymidylate kinas 95.4 0.051 1.1E-06 46.4 6.7 26 51-76 4-29 (205)
443 CHL00081 chlI Mg-protoporyphyr 95.4 0.023 5E-07 52.8 4.7 45 28-74 18-62 (350)
444 CHL00195 ycf46 Ycf46; Provisio 95.3 0.043 9.3E-07 53.5 6.8 49 28-76 229-285 (489)
445 KOG2170 ATPase of the AAA+ sup 95.3 0.039 8.5E-07 49.4 5.9 47 28-74 83-134 (344)
446 PRK06995 flhF flagellar biosyn 95.3 0.096 2.1E-06 50.8 9.1 26 50-75 256-281 (484)
447 TIGR00455 apsK adenylylsulfate 95.3 0.029 6.3E-07 47.3 5.0 26 50-75 18-43 (184)
448 PRK05688 fliI flagellum-specif 95.3 0.1 2.2E-06 50.2 9.0 85 51-141 169-271 (451)
449 PF03193 DUF258: Protein of un 95.3 0.028 6.1E-07 46.1 4.6 36 33-73 23-58 (161)
450 TIGR03497 FliI_clade2 flagella 95.3 0.036 7.9E-07 52.8 6.0 26 50-75 137-162 (413)
451 PRK08506 replicative DNA helic 95.3 0.11 2.5E-06 50.5 9.6 71 31-109 174-244 (472)
452 PRK13236 nitrogenase reductase 95.3 0.031 6.7E-07 51.0 5.4 30 48-77 4-33 (296)
453 PRK14490 putative bifunctional 95.3 0.023 5E-07 53.6 4.6 31 49-79 4-34 (369)
454 PF00437 T2SE: Type II/IV secr 95.3 0.025 5.5E-07 50.8 4.7 108 28-145 105-214 (270)
455 PRK08154 anaerobic benzoate ca 95.3 0.024 5.1E-07 52.1 4.5 27 49-75 132-158 (309)
456 cd02040 NifH NifH gene encodes 95.3 0.033 7.2E-07 49.9 5.4 26 51-76 2-27 (270)
457 PF02562 PhoH: PhoH-like prote 95.3 0.026 5.5E-07 48.4 4.4 53 31-87 4-58 (205)
458 TIGR01817 nifA Nif-specific re 95.2 0.051 1.1E-06 54.0 7.1 47 28-74 197-243 (534)
459 TIGR01040 V-ATPase_V1_B V-type 95.2 0.088 1.9E-06 50.4 8.2 26 50-75 141-166 (466)
460 cd01130 VirB11-like_ATPase Typ 95.2 0.015 3.3E-07 49.1 2.9 85 51-144 26-116 (186)
461 KOG1942 DNA helicase, TBP-inte 95.2 0.036 7.9E-07 49.4 5.2 52 28-79 39-93 (456)
462 TIGR00962 atpA proton transloc 95.2 0.095 2.1E-06 51.1 8.6 86 50-140 161-265 (501)
463 COG0305 DnaB Replicative DNA h 95.2 0.23 5E-06 47.3 10.9 82 50-140 196-289 (435)
464 TIGR00017 cmk cytidylate kinas 95.2 0.02 4.4E-07 49.7 3.6 25 51-75 3-27 (217)
465 cd04139 RalA_RalB RalA/RalB su 95.2 0.017 3.7E-07 47.1 3.0 22 52-73 2-23 (164)
466 TIGR02655 circ_KaiC circadian 95.2 0.038 8.1E-07 54.1 5.8 47 39-85 10-57 (484)
467 COG1223 Predicted ATPase (AAA+ 95.2 0.022 4.9E-07 49.9 3.7 49 28-76 122-177 (368)
468 PLN02165 adenylate isopentenyl 95.2 0.02 4.4E-07 52.5 3.7 27 49-75 42-68 (334)
469 PRK14723 flhF flagellar biosyn 95.1 0.35 7.6E-06 49.5 12.7 25 50-74 185-209 (767)
470 PLN02924 thymidylate kinase 95.1 0.12 2.7E-06 44.9 8.4 28 50-77 16-43 (220)
471 PRK06793 fliI flagellum-specif 95.1 0.066 1.4E-06 51.2 7.1 85 50-140 156-258 (432)
472 cd02032 Bchl_like This family 95.1 0.031 6.8E-07 50.1 4.8 26 52-77 2-27 (267)
473 PRK08099 bifunctional DNA-bind 95.1 0.018 3.8E-07 54.8 3.2 26 49-74 218-243 (399)
474 TIGR00101 ureG urease accessor 95.1 0.036 7.7E-07 47.5 4.8 29 51-79 2-30 (199)
475 COG0283 Cmk Cytidylate kinase 95.1 0.022 4.8E-07 48.6 3.4 26 51-76 5-30 (222)
476 PF02367 UPF0079: Uncharacteri 95.1 0.023 5.1E-07 44.4 3.3 25 50-74 15-39 (123)
477 PF03796 DnaB_C: DnaB-like hel 95.1 0.21 4.6E-06 44.5 10.0 54 51-111 20-74 (259)
478 KOG0730 AAA+-type ATPase [Post 95.1 0.033 7.1E-07 54.9 4.9 51 28-78 435-496 (693)
479 PRK07429 phosphoribulokinase; 95.1 0.037 8E-07 51.1 5.1 30 48-77 6-35 (327)
480 PF00005 ABC_tran: ABC transpo 95.1 0.017 3.8E-07 45.9 2.7 25 51-75 12-36 (137)
481 PRK08840 replicative DNA helic 95.1 0.13 2.8E-06 50.0 9.1 54 50-110 217-271 (464)
482 TIGR02974 phageshock_pspF psp 95.1 0.022 4.9E-07 52.7 3.7 46 29-74 1-46 (329)
483 PRK13232 nifH nitrogenase redu 95.0 0.032 6.9E-07 50.3 4.7 27 51-77 2-28 (273)
484 PRK10646 ADP-binding protein; 95.0 0.039 8.5E-07 44.9 4.6 42 33-74 11-52 (153)
485 PRK04220 2-phosphoglycerate ki 95.0 0.023 5E-07 51.5 3.6 26 49-74 91-116 (301)
486 PLN02459 probable adenylate ki 95.0 0.09 2E-06 46.7 7.2 23 52-74 31-53 (261)
487 PRK06904 replicative DNA helic 95.0 0.14 3.1E-06 49.8 9.2 54 50-110 221-275 (472)
488 PF02456 Adeno_IVa2: Adenoviru 95.0 0.47 1E-05 42.9 11.5 36 50-85 87-124 (369)
489 smart00173 RAS Ras subfamily o 95.0 0.021 4.5E-07 46.8 3.0 21 52-72 2-22 (164)
490 COG1100 GTPase SAR1 and relate 95.0 0.017 3.8E-07 49.9 2.7 23 51-73 6-28 (219)
491 cd04119 RJL RJL (RabJ-Like) su 95.0 0.02 4.4E-07 46.8 3.0 21 53-73 3-23 (168)
492 PRK13233 nifH nitrogenase redu 95.0 0.036 7.7E-07 50.0 4.7 26 51-76 3-28 (275)
493 PRK04192 V-type ATP synthase s 95.0 0.16 3.4E-06 50.2 9.3 48 51-104 228-275 (586)
494 TIGR01618 phage_P_loop phage n 95.0 0.017 3.6E-07 50.1 2.4 22 50-71 12-33 (220)
495 PRK09099 type III secretion sy 95.0 0.05 1.1E-06 52.2 5.8 25 50-74 163-187 (441)
496 PRK07721 fliI flagellum-specif 95.0 0.078 1.7E-06 50.9 7.2 26 50-75 158-183 (438)
497 PRK07594 type III secretion sy 95.0 0.035 7.6E-07 53.0 4.8 25 50-74 155-179 (433)
498 PF07724 AAA_2: AAA domain (Cd 94.9 0.057 1.2E-06 45.0 5.6 35 50-84 3-38 (171)
499 PF00154 RecA: recA bacterial 94.9 0.092 2E-06 48.2 7.3 80 6-85 3-88 (322)
500 cd01673 dNK Deoxyribonucleosid 94.9 0.021 4.5E-07 48.5 3.0 23 52-74 1-23 (193)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.5e-50 Score=425.48 Aligned_cols=344 Identities=36% Similarity=0.606 Sum_probs=299.8
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCCCCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCc
Q 036788 1 PESELVKEVVNQNLKRLAEVSPCSNKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEG 80 (352)
Q Consensus 1 ~e~~~i~~i~~~v~~~~~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~ 80 (352)
+|+++|++|+++|++++..+++...+ .+|||+++++++..+|..+.+++++|+|+||||+||||||+++|+++..+|++
T Consensus 159 ~E~~~i~~Iv~~v~~~l~~~~~~~~~-~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g 237 (1153)
T PLN03210 159 NEAKMIEEIANDVLGKLNLTPSNDFE-DFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQS 237 (1153)
T ss_pred CHHHHHHHHHHHHHHhhccccCcccc-cccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCe
Confidence 59999999999999999988888878 89999999999999998777889999999999999999999999999999999
Q ss_pred eEEEeec--cccc---c-----CCCChHHHHHHHHHHHhcccc-cCCCHHHHHHHhCCCcEEEEEeCCCChHHHHHhhcc
Q 036788 81 SCCHQNV--REES---R-----RPGGLGCLQQILLSKLLQEKN-AILDIALSFRRLSSRKFLIVLDDETCFKQIKSLIGS 149 (352)
Q Consensus 81 ~~~~~~~--~~~s---~-----~~~~~~~l~~~ll~~l~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~ 149 (352)
.+|+.+. +... . .......++..++..+..... .+.....+++.++++|+||||||||+..+++.+.+.
T Consensus 238 ~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~ 317 (1153)
T PLN03210 238 SVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQ 317 (1153)
T ss_pred EEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhh
Confidence 9888532 1100 0 001123455666666554433 333356788999999999999999999998887532
Q ss_pred C------------------------------------------------------CchhHHHHHHHHhcCCchhHHHHhh
Q 036788 150 H------------------------------------------------------GFEELSSRVIKYAQGVPLAIEILGC 175 (352)
Q Consensus 150 ~------------------------------------------------------~~~~~~~~i~~~~~glPLal~~~~~ 175 (352)
. .+.+++++|+++|+|+||||+++|+
T Consensus 318 ~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs 397 (1153)
T PLN03210 318 TQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGS 397 (1153)
T ss_pred CccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 1 2346788999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHhcCCCChhHHHHHhhcccCCCh-hhHHHHHhhhhccCCCCHHHHHHHHHhCCCchHHhHHHHhh
Q 036788 176 FLFEKEKQFWESAINKLKRIPNLEIQKVLKISFDGLDD-EEKNILLDIACFFKWKNKDLVIKFLNACSFTAQIGISSLVD 254 (352)
Q Consensus 176 ~L~~~~~~~w~~~l~~l~~~~~~~v~~~l~~sy~~L~~-~~k~~f~~la~fp~~~~~~~l~~~~~~~~~~~~~~l~~L~~ 254 (352)
+|++++..+|..++.+++...+.++..+|++||+.|++ .+|.||+++|+|+.+.+.+.+..++...++.++..++.|++
T Consensus 398 ~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ 477 (1153)
T PLN03210 398 YLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVD 477 (1153)
T ss_pred HHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHh
Confidence 99999999999999999988888999999999999987 69999999999999999888888888888888889999999
Q ss_pred cCCceeeCCeEEeCHHHHHHHHHHHhhhcCCCCCCceeccChhhHHHHhhcCCCCCceeEEEeecCCccceeeChhhhcC
Q 036788 255 KSLICMHGNNITMHDLLQEMGREIVRQESMNDPAKRSRLWHHEDIIKVLTSNTGTEAIEGICLDMSKVKEIHLNPDTFTK 334 (352)
Q Consensus 255 ~sLl~~~~~~~~mHdlv~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~ 334 (352)
+|||+...+++.||||+|++|++++++++ .+|++++++|.+.++.+++.+++++..+++|.+++++...+.+.+++|.+
T Consensus 478 ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~ 556 (1153)
T PLN03210 478 KSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKG 556 (1153)
T ss_pred cCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhc
Confidence 99999888899999999999999999987 68999999999999999999999999999999999988888899999999
Q ss_pred CCCCcEEEEecc
Q 036788 335 MSKLRFLKFYCS 346 (352)
Q Consensus 335 m~~LrvL~l~~~ 346 (352)
|++|++|+++.+
T Consensus 557 m~~L~~L~~~~~ 568 (1153)
T PLN03210 557 MRNLLFLKFYTK 568 (1153)
T ss_pred CccccEEEEecc
Confidence 999999999744
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-48 Score=394.72 Aligned_cols=309 Identities=27% Similarity=0.354 Sum_probs=253.5
Q ss_pred ccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH---hhCCCCceEEEeeccccccCCCChHHHHHHHHH
Q 036788 30 VEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDK---ISSNFEGSCCHQNVREESRRPGGLGCLQQILLS 106 (352)
Q Consensus 30 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~ 106 (352)
||.+..++.+.+.|...+ ..+++|+||||+||||||++++++ ++.+|+.++|+. +|+. ++...++.+|+.
T Consensus 161 VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~-f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKE-FTTRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----Eccc-ccHHhHHHHHHH
Confidence 999999999999998443 389999999999999999999994 788999999999 7888 999999999999
Q ss_pred HHhcccccCC-----C-HHHHHHHhCCCcEEEEEeCCCChHHHHHhhccC------------------------------
Q 036788 107 KLLQEKNAIL-----D-IALSFRRLSSRKFLIVLDDETCFKQIKSLIGSH------------------------------ 150 (352)
Q Consensus 107 ~l~~~~~~~~-----~-~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~------------------------------ 150 (352)
.++....... . +..+.+.|++||++|||||||+..+|+.+....
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 9888555111 1 788999999999999999999999999887332
Q ss_pred --------------------------CchhHHHHHHHHhcCCchhHHHHhhhhcCC-CHHHHHHHHHHhcCC-----C--
Q 036788 151 --------------------------GFEELSSRVIKYAQGVPLAIEILGCFLFEK-EKQFWESAINKLKRI-----P-- 196 (352)
Q Consensus 151 --------------------------~~~~~~~~i~~~~~glPLal~~~~~~L~~~-~~~~w~~~l~~l~~~-----~-- 196 (352)
..+++|++++++|+|+|||+.++|+.|+.+ +..+|+.+.+.+... +
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 358899999999999999999999999985 677999999987664 1
Q ss_pred ChhHHHHHhhcccCCChhhHHHHHhhhhccCCC--CHHHHHHHHHhCCCch------------HHhHHHHhhcCCceeeC
Q 036788 197 NLEIQKVLKISFDGLDDEEKNILLDIACFFKWK--NKDLVIKFLNACSFTA------------QIGISSLVDKSLICMHG 262 (352)
Q Consensus 197 ~~~v~~~l~~sy~~L~~~~k~~f~~la~fp~~~--~~~~l~~~~~~~~~~~------------~~~l~~L~~~sLl~~~~ 262 (352)
.+.+..++++||+.||++.|.||+|||.||+++ +.+.++.+|+++|++. ..++.+|++++|+....
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 367999999999999999999999999999997 7899999999999762 45899999999999873
Q ss_pred -----CeEEeCHHHHHHHHHHHhhhcCC-------------------CCCCceeccChhhHHHHhhcCCCCCceeEEEee
Q 036788 263 -----NNITMHDLLQEMGREIVRQESMN-------------------DPAKRSRLWHHEDIIKVLTSNTGTEAIEGICLD 318 (352)
Q Consensus 263 -----~~~~mHdlv~~~a~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 318 (352)
.+|+|||+||++|..++.+.... .+...++.+.+............+++++++.+.
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~ 553 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQ 553 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEe
Confidence 67999999999999999933211 112334444444444444444555566666554
Q ss_pred cCCccceeeChhhhcCCCCCcEEEEec
Q 036788 319 MSKVKEIHLNPDTFTKMSKLRFLKFYC 345 (352)
Q Consensus 319 ~~~~~~~~~~~~~~~~m~~LrvL~l~~ 345 (352)
-.......++.+||..|+.||||||+.
T Consensus 554 ~n~~~l~~is~~ff~~m~~LrVLDLs~ 580 (889)
T KOG4658|consen 554 RNSDWLLEISGEFFRSLPLLRVLDLSG 580 (889)
T ss_pred ecchhhhhcCHHHHhhCcceEEEECCC
Confidence 322114567889999999999999984
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=6.5e-35 Score=265.56 Aligned_cols=210 Identities=26% Similarity=0.419 Sum_probs=171.1
Q ss_pred chhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH--hhCCCCceEEEeeccccccCCCChHHHHHHHHHHHh
Q 036788 32 VESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDK--ISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLL 109 (352)
Q Consensus 32 R~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~ 109 (352)
||.++++|.+.|...+++.++|+|+||||+||||||.+++++ ++.+|+.++|+. .+.. .+...++..++..++
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~-~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKN-PSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES--SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----cccc-ccccccccccccccc
Confidence 789999999999976688999999999999999999999998 889999999997 4444 667899999999998
Q ss_pred cccccC---CC----HHHHHHHhCCCcEEEEEeCCCChHHHHHhhccC--------------------------------
Q 036788 110 QEKNAI---LD----IALSFRRLSSRKFLIVLDDETCFKQIKSLIGSH-------------------------------- 150 (352)
Q Consensus 110 ~~~~~~---~~----~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~-------------------------------- 150 (352)
...... .+ ...+.+.+.++++||||||||+...|+.+....
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 885432 11 788999999999999999999999886554211
Q ss_pred ------------------------CchhHHHHHHHHhcCCchhHHHHhhhhcC-CCHHHHHHHHHHhcCC------CChh
Q 036788 151 ------------------------GFEELSSRVIKYAQGVPLAIEILGCFLFE-KEKQFWESAINKLKRI------PNLE 199 (352)
Q Consensus 151 ------------------------~~~~~~~~i~~~~~glPLal~~~~~~L~~-~~~~~w~~~l~~l~~~------~~~~ 199 (352)
..++.+++|++.|+|+||||+++|++|+. .+..+|..+++++... ....
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 23677899999999999999999999965 3567899988875542 2477
Q ss_pred HHHHHhhcccCCChhhHHHHHhhhhccCCC--CHHHHHHHHHhCCCchH
Q 036788 200 IQKVLKISFDGLDDEEKNILLDIACFFKWK--NKDLVIKFLNACSFTAQ 246 (352)
Q Consensus 200 v~~~l~~sy~~L~~~~k~~f~~la~fp~~~--~~~~l~~~~~~~~~~~~ 246 (352)
+..++..||+.||++.|.||++||+||+++ +.+.++.+|.++|++..
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999999999999999999999885 68999999999988654
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.55 E-value=1.1e-12 Score=137.51 Aligned_cols=244 Identities=17% Similarity=0.199 Sum_probs=158.6
Q ss_pred CCCCCCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHH
Q 036788 21 SPCSNKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCL 100 (352)
Q Consensus 21 ~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l 100 (352)
||..+. .+|-|+.-++.+.+ ....+++.|+|++|.||||++..+.++ ++.++|+. +.. .+ .+...+
T Consensus 9 ~p~~~~-~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~-l~~--~d-~~~~~f 74 (903)
T PRK04841 9 RPVRLH-NTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYS-LDE--SD-NQPERF 74 (903)
T ss_pred CCCCcc-ccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEe-cCc--cc-CCHHHH
Confidence 455556 88989876666643 245689999999999999999998864 33678886 432 12 455566
Q ss_pred HHHHHHHHhccccc----C---------CC----HHHHHHHhC--CCcEEEEEeCCCCh------HHHHHhhcc---C--
Q 036788 101 QQILLSKLLQEKNA----I---------LD----IALSFRRLS--SRKFLIVLDDETCF------KQIKSLIGS---H-- 150 (352)
Q Consensus 101 ~~~ll~~l~~~~~~----~---------~~----~~~l~~~l~--~k~~LlVlDdv~~~------~~~~~l~~~---~-- 150 (352)
...++..+...... . .+ ...+...+. +.+++||+||+... ..+..+... .
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~ 154 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLT 154 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeE
Confidence 66666666422110 0 11 122222222 67999999999543 123333211 1
Q ss_pred ------------------------------------------------CchhHHHHHHHHhcCCchhHHHHhhhhcCCCH
Q 036788 151 ------------------------------------------------GFEELSSRVIKYAQGVPLAIEILGCFLFEKEK 182 (352)
Q Consensus 151 ------------------------------------------------~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~ 182 (352)
-..+.+..|.+.|+|.|+++..++..+.....
T Consensus 155 lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~ 234 (903)
T PRK04841 155 LVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNS 234 (903)
T ss_pred EEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Confidence 23456788999999999999998877754321
Q ss_pred HHHHHHHHHhcCCCChhHHHHHhh-cccCCChhhHHHHHhhhhccCCCCHHHHHHHHHhCCCchHHhHHHHhhcCCceee
Q 036788 183 QFWESAINKLKRIPNLEIQKVLKI-SFDGLDDEEKNILLDIACFFKWKNKDLVIKFLNACSFTAQIGISSLVDKSLICMH 261 (352)
Q Consensus 183 ~~w~~~l~~l~~~~~~~v~~~l~~-sy~~L~~~~k~~f~~la~fp~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLl~~~ 261 (352)
........+...+...+...+.- .|+.||++.+.++..+|+++ .++.+.+..+.. .-.....+++|.+.+++...
T Consensus 235 -~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~--~~~~~~~L~~l~~~~l~~~~ 310 (903)
T PRK04841 235 -SLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG--EENGQMRLEELERQGLFIQR 310 (903)
T ss_pred -chhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC--CCcHHHHHHHHHHCCCeeEe
Confidence 01111222222223445554433 48899999999999999996 677666655553 22457789999999997643
Q ss_pred ----CCeEEeCHHHHHHHHHHHhhh
Q 036788 262 ----GNNITMHDLLQEMGREIVRQE 282 (352)
Q Consensus 262 ----~~~~~mHdlv~~~a~~~~~~~ 282 (352)
...|++|++++++++.....+
T Consensus 311 ~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 311 MDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred ecCCCCEEehhHHHHHHHHHHHHhc
Confidence 236999999999999887544
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.25 E-value=8.3e-10 Score=105.05 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=78.4
Q ss_pred CCCCCCCCCcccchhhHHHHHHHhcCC--CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCc--eEEEeeccccccCCC
Q 036788 20 VSPCSNKNQLVEVESRVEEIESLLGAG--SKDVYALGIWGIGGIGKTTIARAIFDKISSNFEG--SCCHQNVREESRRPG 95 (352)
Q Consensus 20 ~~~~~~~~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~s~~~~ 95 (352)
.+...|+ .++||++++++|...|... ......+.|+|++|+|||++++.+++++....+. .+++. . ... .
T Consensus 24 ~~~~~P~-~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~---~~~-~ 97 (394)
T PRK00411 24 EPDYVPE-NLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-C---QID-R 97 (394)
T ss_pred CCCCcCC-CCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-C---CcC-C
Confidence 3445667 8999999999999988522 2334567899999999999999999987665422 23333 1 222 4
Q ss_pred ChHHHHHHHHHHHhccc-ccCC-C----HHHHHHHhC--CCcEEEEEeCCCCh
Q 036788 96 GLGCLQQILLSKLLQEK-NAIL-D----IALSFRRLS--SRKFLIVLDDETCF 140 (352)
Q Consensus 96 ~~~~l~~~ll~~l~~~~-~~~~-~----~~~l~~~l~--~k~~LlVlDdv~~~ 140 (352)
+...++..++.++.... +... + ...+.+.+. ++..+||+|+++..
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 56788888888886522 2111 1 344555553 45689999999764
No 6
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.24 E-value=2.2e-10 Score=105.15 Aligned_cols=217 Identities=17% Similarity=0.169 Sum_probs=126.5
Q ss_pred CcccchhhHHHHHHHhcCC---CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHH
Q 036788 28 QLVEVESRVEEIESLLGAG---SKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQIL 104 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~l 104 (352)
.|||+++.+++|..++... ......+.++|++|+|||+||+.++++....+. +...... ..... +...
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~----~~~~~-l~~~ 75 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPAL----EKPGD-LAAI 75 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccchh----cCchh-HHHH
Confidence 6999999999999888621 233556889999999999999999998754321 1111000 11111 1122
Q ss_pred HHHHhcccc-------cCCC--HHHHHHHhCCCcEEEEEeCCCChHHHH-------------------------------
Q 036788 105 LSKLLQEKN-------AILD--IALSFRRLSSRKFLIVLDDETCFKQIK------------------------------- 144 (352)
Q Consensus 105 l~~l~~~~~-------~~~~--~~~l~~~l~~k~~LlVlDdv~~~~~~~------------------------------- 144 (352)
+..+..... .++. .+.+...+.+.+..+|+++..+..++.
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~ 155 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILR 155 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEE
Confidence 222222211 1111 334455555555555555432221111
Q ss_pred ----------Hhhc----cC---CchhHHHHHHHHhcCCchhHHHHhhhhcCCCHHHHHHHHHHhcCC--CC---hhHHH
Q 036788 145 ----------SLIG----SH---GFEELSSRVIKYAQGVPLAIEILGCFLFEKEKQFWESAINKLKRI--PN---LEIQK 202 (352)
Q Consensus 145 ----------~l~~----~~---~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~w~~~l~~l~~~--~~---~~v~~ 202 (352)
.++. .. -.++....|++.|+|.|-.+..++..+ |... ...... .. .....
T Consensus 156 l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a-~~~~~~~it~~~v~~~l~ 227 (305)
T TIGR00635 156 LEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRV-------RDFA-QVRGQKIINRDIALKALE 227 (305)
T ss_pred eCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHH-HHcCCCCcCHHHHHHHHH
Confidence 0000 00 345667789999999996665444432 1110 001110 11 12223
Q ss_pred HHhhcccCCChhhHHHHH-hhhhccCC-CCHHHHHHHHHhCCCchHHhHH-HHhhcCCceee
Q 036788 203 VLKISFDGLDDEEKNILL-DIACFFKW-KNKDLVIKFLNACSFTAQIGIS-SLVDKSLICMH 261 (352)
Q Consensus 203 ~l~~sy~~L~~~~k~~f~-~la~fp~~-~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLl~~~ 261 (352)
.+...|..+++.++..+. .++.+..+ +..+.+...+..+....+..++ .|++++||...
T Consensus 228 ~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 228 MLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 366778899998888777 55667543 6788888888888888888888 69999999754
No 7
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.21 E-value=2.2e-10 Score=106.12 Aligned_cols=222 Identities=16% Similarity=0.122 Sum_probs=129.4
Q ss_pred CCCCCcccchhhHHHHHHHhcC---CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHH
Q 036788 24 SNKNQLVEVESRVEEIESLLGA---GSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCL 100 (352)
Q Consensus 24 ~~~~~~vGR~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l 100 (352)
..+ +|+|+++.++.+..++.. .....+.+.|+|++|+|||+||+.+++.+...+. ...... .....-
T Consensus 23 ~~~-~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~----~~~~~~-----~~~~~~ 92 (328)
T PRK00080 23 SLD-EFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR----ITSGPA-----LEKPGD 92 (328)
T ss_pred CHH-HhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE----EEeccc-----ccChHH
Confidence 335 799999999999887752 2334567889999999999999999998754321 111110 111111
Q ss_pred HHHHHHHHhcccc-------cCCC--HHHHHHHhCCCcEEEEEeCCCChHHH----------------------------
Q 036788 101 QQILLSKLLQEKN-------AILD--IALSFRRLSSRKFLIVLDDETCFKQI---------------------------- 143 (352)
Q Consensus 101 ~~~ll~~l~~~~~-------~~~~--~~~l~~~l~~k~~LlVlDdv~~~~~~---------------------------- 143 (352)
+..++..+....- .+.. .+.+...+.+.+..+++|+..+..++
T Consensus 93 l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~ 172 (328)
T PRK00080 93 LAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFG 172 (328)
T ss_pred HHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcC
Confidence 2223333322211 1111 23344444555555555543221110
Q ss_pred -------------HHhhcc-------CCchhHHHHHHHHhcCCchhHHHHhhhhcCCCHHHHHHHHHHhcCCCC---hhH
Q 036788 144 -------------KSLIGS-------HGFEELSSRVIKYAQGVPLAIEILGCFLFEKEKQFWESAINKLKRIPN---LEI 200 (352)
Q Consensus 144 -------------~~l~~~-------~~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~w~~~l~~l~~~~~---~~v 200 (352)
..++.. ...++.+..|++.|+|.|-.+..+...+. .|.... .-..... ...
T Consensus 173 ~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~-~~~~I~~~~v~~~ 246 (328)
T PRK00080 173 IVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK-GDGVITKEIADKA 246 (328)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc-CCCCCCHHHHHHH
Confidence 000000 04456678899999999955544443321 111110 0000111 233
Q ss_pred HHHHhhcccCCChhhHHHHH-hhhhccCC-CCHHHHHHHHHhCCCchHHhHH-HHhhcCCceee
Q 036788 201 QKVLKISFDGLDDEEKNILL-DIACFFKW-KNKDLVIKFLNACSFTAQIGIS-SLVDKSLICMH 261 (352)
Q Consensus 201 ~~~l~~sy~~L~~~~k~~f~-~la~fp~~-~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLl~~~ 261 (352)
...+...+..|++..+..+. .+..|+.+ +..+.+...+..+....++.++ .|++.+||+..
T Consensus 247 l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 247 LDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 45567778899998888886 66777644 5889999998888888887888 99999999755
No 8
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.19 E-value=3.3e-10 Score=116.48 Aligned_cols=253 Identities=15% Similarity=0.176 Sum_probs=157.0
Q ss_pred CcccchhhHHHHHHHhcCC-CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCc---eEE------------Eeeccccc
Q 036788 28 QLVEVESRVEEIESLLGAG-SKDVYALGIWGIGGIGKTTIARAIFDKISSNFEG---SCC------------HQNVREES 91 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~---~~~------------~~~~~~~s 91 (352)
.++||+.+++.|...+..- .....++.+.|.+|||||+++.+|...+...+.. ..| +..+++..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 3799999999999988743 3446799999999999999999999976554211 111 10000000
Q ss_pred c-----CCCChHHHHHHHHHHHhcccc--------------------cCCC-----------HHHHHHHh-CCCcEEEEE
Q 036788 92 R-----RPGGLGCLQQILLSKLLQEKN--------------------AILD-----------IALSFRRL-SSRKFLIVL 134 (352)
Q Consensus 92 ~-----~~~~~~~l~~~ll~~l~~~~~--------------------~~~~-----------~~~l~~~l-~~k~~LlVl 134 (352)
+ .......+...++..++.... .+.. ...+.... +.++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 0 001112222222222222111 1111 12222222 456999999
Q ss_pred eCC-CChHH----HHHhh---c--cC---------------------------------------------------Cch
Q 036788 135 DDE-TCFKQ----IKSLI---G--SH---------------------------------------------------GFE 153 (352)
Q Consensus 135 Ddv-~~~~~----~~~l~---~--~~---------------------------------------------------~~~ 153 (352)
||+ |-... ++.+. + .. ...
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~~ 240 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLLPA 240 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccccc
Confidence 999 53322 11111 0 00 345
Q ss_pred hHHHHHHHHhcCCchhHHHHhhhhcCC-------CHHHHHHHHHHhcCCCC-hhHHHHHhhcccCCChhhHHHHHhhhhc
Q 036788 154 ELSSRVIKYAQGVPLAIEILGCFLFEK-------EKQFWESAINKLKRIPN-LEIQKVLKISFDGLDDEEKNILLDIACF 225 (352)
Q Consensus 154 ~~~~~i~~~~~glPLal~~~~~~L~~~-------~~~~w~~~l~~l~~~~~-~~v~~~l~~sy~~L~~~~k~~f~~la~f 225 (352)
+....|++++.|+|+.+..+-..+... +...|..-...+..... +++...+..-.+.||...|+++...||+
T Consensus 241 p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA~i 320 (849)
T COG3899 241 PLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAAACI 320 (849)
T ss_pred hHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 678999999999999999999888763 34556555555443222 3366678899999999999999999999
Q ss_pred cCCCCHHHHHHHHHhCCCchHHhHHHHhhcCCceee---------CCeE---EeCHHHHHHHHHHHh
Q 036788 226 FKWKNKDLVIKFLNACSFTAQIGISSLVDKSLICMH---------GNNI---TMHDLLQEMGREIVR 280 (352)
Q Consensus 226 p~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLl~~~---------~~~~---~mHdlv~~~a~~~~~ 280 (352)
...|+.+.|..++..........+......++|.+. .... ..|++|++.|.....
T Consensus 321 G~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~ 387 (849)
T COG3899 321 GNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIP 387 (849)
T ss_pred CccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCc
Confidence 999999999999886444444445555555666542 1112 568888887765543
No 9
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.10 E-value=9.7e-09 Score=101.60 Aligned_cols=244 Identities=17% Similarity=0.195 Sum_probs=152.0
Q ss_pred CCCCCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHH
Q 036788 22 PCSNKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQ 101 (352)
Q Consensus 22 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~ 101 (352)
|..+. +.|-|..-.+.+.+ ..+.+.+.|..++|.|||||+.+++. ....-..+.|+. +.+ .+ .+...+.
T Consensus 15 P~~~~-~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wls-lde--~d-ndp~rF~ 83 (894)
T COG2909 15 PVRPD-NYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLS-LDE--SD-NDPARFL 83 (894)
T ss_pred CCCcc-cccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEee-cCC--cc-CCHHHHH
Confidence 33344 77778766665554 34679999999999999999999998 333345678887 322 22 6678888
Q ss_pred HHHHHHHhcccccCCC-----------------HHHHHHHhC--CCcEEEEEeCCC---Ch---HHHHHhhc---cC---
Q 036788 102 QILLSKLLQEKNAILD-----------------IALSFRRLS--SRKFLIVLDDET---CF---KQIKSLIG---SH--- 150 (352)
Q Consensus 102 ~~ll~~l~~~~~~~~~-----------------~~~l~~~l~--~k~~LlVlDdv~---~~---~~~~~l~~---~~--- 150 (352)
..++..+....+...+ .+.+..-+. .++..+||||.. ++ .-++.++. ..
T Consensus 84 ~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~l 163 (894)
T COG2909 84 SYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTL 163 (894)
T ss_pred HHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEE
Confidence 8888887754442211 222333222 468999999974 22 12333331 11
Q ss_pred -----------------------------------------------CchhHHHHHHHHhcCCchhHHHHhhhhcCC-CH
Q 036788 151 -----------------------------------------------GFEELSSRVIKYAQGVPLAIEILGCFLFEK-EK 182 (352)
Q Consensus 151 -----------------------------------------------~~~~~~~~i~~~~~glPLal~~~~~~L~~~-~~ 182 (352)
-....++.+.+.++|-+-|+..++=.++.. +.
T Consensus 164 vv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~ 243 (894)
T COG2909 164 VVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTSA 243 (894)
T ss_pred EEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcH
Confidence 233455667777777777777776666632 21
Q ss_pred HHHHHHHHHhcCCCChhH-HHHHhhcccCCChhhHHHHHhhhhccCCCCHHHHHHHHHhCCCchHHhHHHHhhcCCceee
Q 036788 183 QFWESAINKLKRIPNLEI-QKVLKISFDGLDDEEKNILLDIACFFKWKNKDLVIKFLNACSFTAQIGISSLVDKSLICMH 261 (352)
Q Consensus 183 ~~w~~~l~~l~~~~~~~v-~~~l~~sy~~L~~~~k~~f~~la~fp~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLl~~~ 261 (352)
..-. ..+... ...+ .-...--++.||++.|..++-+|+++. +. ..|...+.. .......+++|.+++|+-..
T Consensus 244 ~q~~---~~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~-~eL~~~Ltg-~~ng~amLe~L~~~gLFl~~ 316 (894)
T COG2909 244 EQSL---RGLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FN-DELCNALTG-EENGQAMLEELERRGLFLQR 316 (894)
T ss_pred HHHh---hhccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hh-HHHHHHHhc-CCcHHHHHHHHHhCCCceee
Confidence 1111 111111 1111 122333478999999999999999942 33 333333332 22345579999999998754
Q ss_pred ----CCeEEeCHHHHHHHHHHHhhhc
Q 036788 262 ----GNNITMHDLLQEMGREIVRQES 283 (352)
Q Consensus 262 ----~~~~~mHdlv~~~a~~~~~~~~ 283 (352)
++.|+.|.|..+|.+...+.+.
T Consensus 317 Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 317 LDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred ecCCCceeehhHHHHHHHHhhhcccc
Confidence 6679999999999998887754
No 10
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.01 E-value=8.8e-10 Score=101.02 Aligned_cols=228 Identities=18% Similarity=0.221 Sum_probs=161.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCC-HHHHHHHhCC
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILD-IALSFRRLSS 127 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~-~~~l~~~l~~ 127 (352)
..+.+.++|.|||||||++..+.+ +...|....|+.+...++. ...+...+...++.....-.. ...+.....+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD----~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITD----PALVFPTLAGALGLHVQPGDSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCc----hhHhHHHHHhhcccccccchHHHHHHHHHHhh
Confidence 357999999999999999999999 8889998888877776633 345555555545544432222 6678888889
Q ss_pred CcEEEEEeCCCChHH-----HHHhhccC---------------------------------------------------C
Q 036788 128 RKFLIVLDDETCFKQ-----IKSLIGSH---------------------------------------------------G 151 (352)
Q Consensus 128 k~~LlVlDdv~~~~~-----~~~l~~~~---------------------------------------------------~ 151 (352)
++.++|+||..+... ...+.++. .
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~ 167 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDD 167 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceeecCC
Confidence 999999999866533 22222222 4
Q ss_pred chhHHHHHHHHhcCCchhHHHHhhhhcCCCHHHHHHHHHH----hcCC------CChhHHHHHhhcccCCChhhHHHHHh
Q 036788 152 FEELSSRVIKYAQGVPLAIEILGCFLFEKEKQFWESAINK----LKRI------PNLEIQKVLKISFDGLDDEEKNILLD 221 (352)
Q Consensus 152 ~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~w~~~l~~----l~~~------~~~~v~~~l~~sy~~L~~~~k~~f~~ 221 (352)
.......|.+...|.|++|...++..+...+.+....+.. +... ........+..||.-|+..++..|..
T Consensus 168 ~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~r 247 (414)
T COG3903 168 NAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFGR 247 (414)
T ss_pred chHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhcc
Confidence 4566788999999999999999999988765554444432 3322 12557888999999999999999999
Q ss_pred hhhccCCCCHHHHHHHHHh------CCCchHHhHHHHhhcCCceee----CCeEEeCHHHHHHHHHHHhhh
Q 036788 222 IACFFKWKNKDLVIKFLNA------CSFTAQIGISSLVDKSLICMH----GNNITMHDLLQEMGREIVRQE 282 (352)
Q Consensus 222 la~fp~~~~~~~l~~~~~~------~~~~~~~~l~~L~~~sLl~~~----~~~~~mHdlv~~~a~~~~~~~ 282 (352)
++.|...|..+ +...-.. +.+.....+..|++++++... ..+|+.-+-+|.|+..+..+.
T Consensus 248 La~~~g~f~~~-l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~ 317 (414)
T COG3903 248 LAVFVGGFDLG-LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRS 317 (414)
T ss_pred hhhhhhhhccc-HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999888766 2222222 122234567889999998865 334777677777777665443
No 11
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.93 E-value=7.4e-09 Score=97.52 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=77.4
Q ss_pred CCCCCCCCCcccchhhHHHHHHHhcC--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC------ceEEEeeccccc
Q 036788 20 VSPCSNKNQLVEVESRVEEIESLLGA--GSKDVYALGIWGIGGIGKTTIARAIFDKISSNFE------GSCCHQNVREES 91 (352)
Q Consensus 20 ~~~~~~~~~~vGR~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~s 91 (352)
.+...|+ .++||++++++|...|.. .......+.|+|++|+|||++++.+++++....+ ..+|+. . .
T Consensus 9 ~~~~~p~-~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in-~---~ 83 (365)
T TIGR02928 9 EPDYVPD-RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN-C---Q 83 (365)
T ss_pred CCCCCCC-CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE-C---C
Confidence 3556677 899999999999999863 1233467899999999999999999997654322 223443 2 2
Q ss_pred cCCCChHHHHHHHHHHHhc---ccc--cCCC---HHHHHHHh--CCCcEEEEEeCCCCh
Q 036788 92 RRPGGLGCLQQILLSKLLQ---EKN--AILD---IALSFRRL--SSRKFLIVLDDETCF 140 (352)
Q Consensus 92 ~~~~~~~~l~~~ll~~l~~---~~~--~~~~---~~~l~~~l--~~k~~LlVlDdv~~~ 140 (352)
.. .+...++..++.++.. ..+ ..+. ...+.+.+ .+++++||||+++..
T Consensus 84 ~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 84 IL-DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred CC-CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 22 4567788888888742 211 1111 33444444 356789999999765
No 12
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.88 E-value=1.1e-07 Score=85.57 Aligned_cols=85 Identities=16% Similarity=0.125 Sum_probs=54.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCC---HHHHHH---
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILD---IALSFR--- 123 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~---~~~l~~--- 123 (352)
..++.|+|++|+||||+++.+++.+...=-..+|+. ... .+..+++..+...++.+...... ...+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~-~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTR-VDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCC-CCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999999988653211122332 222 45667788888777654332111 222222
Q ss_pred --HhCCCcEEEEEeCCCCh
Q 036788 124 --RLSSRKFLIVLDDETCF 140 (352)
Q Consensus 124 --~l~~k~~LlVlDdv~~~ 140 (352)
...+++.++|+||++..
T Consensus 117 ~~~~~~~~~vliiDe~~~l 135 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNL 135 (269)
T ss_pred HHHhCCCCeEEEEECcccC
Confidence 23678899999999754
No 13
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.78 E-value=6e-09 Score=91.32 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=40.8
Q ss_pred cccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 29 LVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 29 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
|+||+.++++|.+++.. +..+.+.|+|+.|+|||+|++.+.+..++.-...+|+.
T Consensus 1 F~gR~~el~~l~~~l~~--~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~ 55 (234)
T PF01637_consen 1 FFGREKELEKLKELLES--GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYID 55 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHC
T ss_pred CCCHHHHHHHHHHHHHh--hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEe
Confidence 79999999999999973 33568999999999999999999998754332444444
No 14
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.74 E-value=2.1e-08 Score=84.81 Aligned_cols=50 Identities=34% Similarity=0.498 Sum_probs=35.4
Q ss_pred CcccchhhHHHHHHHhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLG-AGSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.|+||+++++++...|. ......+.+.|+|.+|+|||+|.+++++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999994 233446899999999999999999999987665
No 15
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.72 E-value=7e-07 Score=81.87 Aligned_cols=97 Identities=25% Similarity=0.378 Sum_probs=61.8
Q ss_pred CcccchhhH---HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHH
Q 036788 28 QLVEVESRV---EEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQIL 104 (352)
Q Consensus 28 ~~vGR~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~l 104 (352)
++||.+.-+ .-|..++. ++.+....+||+||+||||||+.++......|...-=+. .+..++...+
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~---------~gvkdlr~i~ 93 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT---------SGVKDLREII 93 (436)
T ss_pred HhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---------ccHHHHHHHH
Confidence 566666555 22444444 456677889999999999999999998776654321111 3344444333
Q ss_pred HHHHhcccccCCCHHHHHHHhCCCcEEEEEeCCC--ChHHHHHhhc
Q 036788 105 LSKLLQEKNAILDIALSFRRLSSRKFLIVLDDET--CFKQIKSLIG 148 (352)
Q Consensus 105 l~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~l~~ 148 (352)
- +.-+....+++.+|++|.|. +..|-+.|++
T Consensus 94 e-------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp 126 (436)
T COG2256 94 E-------------EARKNRLLGRRTILFLDEIHRFNKAQQDALLP 126 (436)
T ss_pred H-------------HHHHHHhcCCceEEEEehhhhcChhhhhhhhh
Confidence 1 11223345899999999995 5566666664
No 16
>PTZ00202 tuzin; Provisional
Probab=98.69 E-value=3e-07 Score=85.75 Aligned_cols=102 Identities=18% Similarity=0.159 Sum_probs=70.9
Q ss_pred CCCCCCCcccchhhHHHHHHHhcCCC-CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHH
Q 036788 22 PCSNKNQLVEVESRVEEIESLLGAGS-KDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCL 100 (352)
Q Consensus 22 ~~~~~~~~vGR~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l 100 (352)
|..+. .|+||+.++.+|...|...+ +..+++.|.|++|+|||||++.+..... ..+++.+. .+..++
T Consensus 258 Pa~~~-~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNp-------rg~eEl 325 (550)
T PTZ00202 258 PAVIR-QFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDV-------RGTEDT 325 (550)
T ss_pred CCCcc-CCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECC-------CCHHHH
Confidence 44455 89999999999999997433 3356999999999999999999997654 22444433 456899
Q ss_pred HHHHHHHHhcccccC-CC-HHHHHHHh-----C-CCcEEEEEe
Q 036788 101 QQILLSKLLQEKNAI-LD-IALSFRRL-----S-SRKFLIVLD 135 (352)
Q Consensus 101 ~~~ll~~l~~~~~~~-~~-~~~l~~~l-----~-~k~~LlVlD 135 (352)
+..++..++.+.... .+ ...+.+.+ . +++.+||+-
T Consensus 326 Lr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~ 368 (550)
T PTZ00202 326 LRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLK 368 (550)
T ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999999999743311 22 22232222 3 667777653
No 17
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.64 E-value=2.4e-07 Score=79.26 Aligned_cols=52 Identities=25% Similarity=0.437 Sum_probs=37.8
Q ss_pred CCCcccchhhHHHHHHHhc---CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 26 KNQLVEVESRVEEIESLLG---AGSKDVYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 26 ~~~~vGR~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
+ +|||.++-+..+.-++. ...+....+.+||+||+||||||.-+++.....|
T Consensus 24 ~-efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~ 78 (233)
T PF05496_consen 24 D-EFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNF 78 (233)
T ss_dssp C-CS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred H-HccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCe
Confidence 5 89999999998776654 2334577889999999999999999999987665
No 18
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=6e-07 Score=83.83 Aligned_cols=115 Identities=15% Similarity=0.216 Sum_probs=81.8
Q ss_pred CCCCCCCCCcccchhhHHHHHHHhcC--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCc--eEEEeeccccccCCC
Q 036788 20 VSPCSNKNQLVEVESRVEEIESLLGA--GSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEG--SCCHQNVREESRRPG 95 (352)
Q Consensus 20 ~~~~~~~~~~vGR~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~s~~~~ 95 (352)
.+...|+ .+.+|+.+++++...|.. ....+.-+.|+|.+|+|||+.++.+.+++.+.... .+++. .. .. .
T Consensus 11 ~~~~iP~-~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-c~---~~-~ 84 (366)
T COG1474 11 LEDYIPE-ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN-CL---EL-R 84 (366)
T ss_pred CCCCCcc-cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe-ee---eC-C
Confidence 3456777 899999999999988762 22223348899999999999999999998776433 35554 22 22 6
Q ss_pred ChHHHHHHHHHHHhcccc-cCCC---HHHHHHHhC--CCcEEEEEeCCCCh
Q 036788 96 GLGCLQQILLSKLLQEKN-AILD---IALSFRRLS--SRKFLIVLDDETCF 140 (352)
Q Consensus 96 ~~~~l~~~ll~~l~~~~~-~~~~---~~~l~~~l~--~k~~LlVlDdv~~~ 140 (352)
+..++...|+.+++.... ..+. ...+.+.+. ++.+++|||+++..
T Consensus 85 t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 85 TPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred CHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 778999999998873333 2332 445555553 57899999999643
No 19
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.49 E-value=3.4e-07 Score=72.82 Aligned_cols=86 Identities=20% Similarity=0.179 Sum_probs=58.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC-----CCceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCC----HHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSN-----FEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILD----IAL 120 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~----~~~ 120 (352)
.+.+.|+|.+|+|||+++..+++..... -...+|+. .... .+...+...++..++.......+ .+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSS-RTPRDFAQEILEALGLPLKSRQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHH-SSHHHHHHHHHHHHT-SSSSTS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCC-CCHHHHHHHHHHHhCccccccCCHHHHHHH
Confidence 4688999999999999999999976432 23445665 3333 56889999999999887664112 455
Q ss_pred HHHHhCCC-cEEEEEeCCCCh
Q 036788 121 SFRRLSSR-KFLIVLDDETCF 140 (352)
Q Consensus 121 l~~~l~~k-~~LlVlDdv~~~ 140 (352)
+.+.+... ..+||+|+++..
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHH
T ss_pred HHHHHHhcCCeEEEEeChHhc
Confidence 55555544 459999999754
No 20
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.48 E-value=7.7e-06 Score=78.26 Aligned_cols=49 Identities=29% Similarity=0.492 Sum_probs=39.3
Q ss_pred CcccchhhHHH---HHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 28 QLVEVESRVEE---IESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 28 ~~vGR~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
.+||++..+.. +..++.. .....+.++|++|+||||||+.+++.....|
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~ 64 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPF 64 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 79999988766 7777763 3455788899999999999999999875443
No 21
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.44 E-value=1.5e-06 Score=87.38 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=73.2
Q ss_pred CCCCCCCCcccchhhHHHHHHHhcC---CCCCeEEEEEEcCCCchHHHHHHHHHHHhhC-----CCCc--eEEEeecccc
Q 036788 21 SPCSNKNQLVEVESRVEEIESLLGA---GSKDVYALGIWGIGGIGKTTIARAIFDKISS-----NFEG--SCCHQNVREE 90 (352)
Q Consensus 21 ~~~~~~~~~vGR~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-----~f~~--~~~~~~~~~~ 90 (352)
+..+|+ .+.||++|+++|...|.. ++....++.|+|.+|+|||+.++.+.+++.+ ..+. .+++. ..
T Consensus 750 ~DYVPD-~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-Cm-- 825 (1164)
T PTZ00112 750 LDVVPK-YLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-GM-- 825 (1164)
T ss_pred cccCCC-cCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-CC--
Confidence 456677 999999999999998862 2333357789999999999999999987642 2221 23443 11
Q ss_pred ccCCCChHHHHHHHHHHHhcccc--cCCC---HHHHHHHhC---CCcEEEEEeCCCCh
Q 036788 91 SRRPGGLGCLQQILLSKLLQEKN--AILD---IALSFRRLS---SRKFLIVLDDETCF 140 (352)
Q Consensus 91 s~~~~~~~~l~~~ll~~l~~~~~--~~~~---~~~l~~~l~---~k~~LlVlDdv~~~ 140 (352)
.- .....+...|..++....+ .... ...+...+. ....+||||+++..
T Consensus 826 -~L-stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 826 -NV-VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred -cc-CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 11 4456677777777744433 2222 333333331 22458999999744
No 22
>PF05729 NACHT: NACHT domain
Probab=98.42 E-value=8.1e-07 Score=73.44 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=49.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCC------CceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCCHHHHHH-
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNF------EGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILDIALSFR- 123 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~- 123 (352)
+++.|+|.+|+||||+++.+++++.... ...+|+ ..+..... .....+...+........... ...+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~--~~~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFF-SLRDISDS-NNSRSLADLLFDQLPESIAPI--EELLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEE-eehhhhhc-cccchHHHHHHHhhccchhhh--HHHHHHH
Confidence 5789999999999999999999865543 233333 34433322 212233333333322221111 111222
Q ss_pred HhCCCcEEEEEeCCCChHH
Q 036788 124 RLSSRKFLIVLDDETCFKQ 142 (352)
Q Consensus 124 ~l~~k~~LlVlDdv~~~~~ 142 (352)
....++++||+|++++...
T Consensus 77 ~~~~~~~llilDglDE~~~ 95 (166)
T PF05729_consen 77 LEKNKRVLLILDGLDELEE 95 (166)
T ss_pred HHcCCceEEEEechHhccc
Confidence 2357899999999976543
No 23
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.41 E-value=2.4e-06 Score=68.64 Aligned_cols=54 Identities=28% Similarity=0.266 Sum_probs=41.0
Q ss_pred ccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 30 VEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 30 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
+|++..++.+...+.. ...+.+.|+|.+|+|||++++.+++.....-...+++.
T Consensus 1 ~~~~~~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 1 VGQEEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CchHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 4788889999888863 23467889999999999999999998754333344443
No 24
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.38 E-value=8.2e-07 Score=82.26 Aligned_cols=87 Identities=15% Similarity=0.066 Sum_probs=59.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC-CCCceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCC------------
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISS-NFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILD------------ 117 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~------------ 117 (352)
+..+|+|++|+||||||+.+++.+.. +|+..+|+..+++-+ ..+.++++.+...+.....+.+.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~---~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERP---EEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCch---hHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 57789999999999999999997654 799999998544311 36777777776322222211111
Q ss_pred -HHHHHHHhCCCcEEEEEeCCCChHH
Q 036788 118 -IALSFRRLSSRKFLIVLDDETCFKQ 142 (352)
Q Consensus 118 -~~~l~~~l~~k~~LlVlDdv~~~~~ 142 (352)
++.+. ..+++++|++|++.....
T Consensus 247 ~Ae~~~--e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 247 KAKRLV--EHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHHHHH--HcCCCEEEEEEChHHHHH
Confidence 12222 367999999999975544
No 25
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=4.8e-05 Score=75.05 Aligned_cols=46 Identities=28% Similarity=0.305 Sum_probs=39.5
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
++||.+..++.|.+.+..+. -...+.++|..|+||||+|+.+++.+
T Consensus 17 dVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999997432 24567899999999999999999975
No 26
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=3.5e-05 Score=77.03 Aligned_cols=55 Identities=25% Similarity=0.288 Sum_probs=43.2
Q ss_pred HhhcCCCCCCCCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 15 KRLAEVSPCSNKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 15 ~~~~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
++.++... + ++||.+..++.|.+++..++ -...+.++|..|+||||+|+.+++.+
T Consensus 8 rKYRPqtF---d-EVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 8 RKWRPKDF---A-SLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred HHhCCCcH---H-HHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44444333 4 79999999999999987432 24566799999999999999999875
No 27
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.31 E-value=1.8e-06 Score=76.41 Aligned_cols=88 Identities=18% Similarity=0.088 Sum_probs=58.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhC-CCCceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCC----------H
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISS-NFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILD----------I 118 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~----------~ 118 (352)
-..++|.|.+|+|||||++.+++.+.. +|+..+|+..+++ .. .++.++++.+...+.....+.+. .
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~-~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RP-EEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CC-ccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 357899999999999999999997644 6898999874432 12 57888888883322222111111 1
Q ss_pred HHHHH-HhCCCcEEEEEeCCCCh
Q 036788 119 ALSFR-RLSSRKFLIVLDDETCF 140 (352)
Q Consensus 119 ~~l~~-~l~~k~~LlVlDdv~~~ 140 (352)
..... .-.++++++++|++...
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 11121 13589999999999654
No 28
>PF14516 AAA_35: AAA-like domain
Probab=98.28 E-value=0.00011 Score=68.22 Aligned_cols=221 Identities=12% Similarity=0.105 Sum_probs=122.3
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeecccccc-CCCChHHHHHHHHH
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESR-RPGGLGCLQQILLS 106 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~-~~~~~~~l~~~ll~ 106 (352)
.+|+|...-+++.+.+... -..+.|.|+..+|||+|..++.+..+..=-..+++ ++..... ...+...+.+.+..
T Consensus 12 ~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~i-d~~~~~~~~~~~~~~f~~~~~~ 87 (331)
T PF14516_consen 12 FYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYI-DLQQLGSAIFSDLEQFLRWFCE 87 (331)
T ss_pred cccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEE-EeecCCCcccCCHHHHHHHHHH
Confidence 7889996777777666531 24889999999999999999999876542223344 3444332 11445666666554
Q ss_pred HHhcccc---c--------CCC----HHHHHHHh---CCCcEEEEEeCCCChHH----HHHhhc---c----C-------
Q 036788 107 KLLQEKN---A--------ILD----IALSFRRL---SSRKFLIVLDDETCFKQ----IKSLIG---S----H------- 150 (352)
Q Consensus 107 ~l~~~~~---~--------~~~----~~~l~~~l---~~k~~LlVlDdv~~~~~----~~~l~~---~----~------- 150 (352)
.+...-. . +.. ...+.+.+ .+++++|++|+++.... ...+.+ + +
T Consensus 88 ~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~ 167 (331)
T PF14516_consen 88 EISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQ 167 (331)
T ss_pred HHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccc
Confidence 4443221 1 111 22233322 26899999999974321 111111 0 0
Q ss_pred -------------------------------------------------CchhHHHHHHHHhcCCchhHHHHhhhhcCCC
Q 036788 151 -------------------------------------------------GFEELSSRVIKYAQGVPLAIEILGCFLFEKE 181 (352)
Q Consensus 151 -------------------------------------------------~~~~~~~~i~~~~~glPLal~~~~~~L~~~~ 181 (352)
......+.|...+||+|..+..++..+....
T Consensus 168 ~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~~ 247 (331)
T PF14516_consen 168 KLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFSQEQLEQLMDWTGGHPYLVQKACYLLVEEQ 247 (331)
T ss_pred eEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCCHHHHHHHHHHHCCCHHHHHHHHHHHHHcc
Confidence 2334488999999999999999999987631
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHhhcccCCChhhHHHHHhhhhccCCCCH-HHHHHHHHhCCC--chHHhHHHHhhcCCc
Q 036788 182 KQFWESAINKLKRIPNLEIQKVLKISFDGLDDEEKNILLDIACFFKWKNK-DLVIKFLNACSF--TAQIGISSLVDKSLI 258 (352)
Q Consensus 182 ~~~w~~~l~~l~~~~~~~v~~~l~~sy~~L~~~~k~~f~~la~fp~~~~~-~~l~~~~~~~~~--~~~~~l~~L~~~sLl 258 (352)
.....++..-.... ..| +.+.+.+...+ .+.... +.+..++..... ........|...|||
T Consensus 248 -~~~~~l~~~a~~~~---------~~~---~~hL~~l~~~L---~~~~~L~~~~~~il~~~~~~~~~~~~~~~L~~~GLV 311 (331)
T PF14516_consen 248 -ITLEQLLEEAITDN---------GIY---NDHLDRLLDRL---QQNPELLEAYQQILFSGEPVDLDSDDIYKLESLGLV 311 (331)
T ss_pred -CcHHHHHHHHHHhc---------ccH---HHHHHHHHHHH---ccCHHHHHHHHHHHhCCCCcccChHHHHHHHHCCeE
Confidence 11222222110000 001 22444443333 111111 222233332211 123456789999999
Q ss_pred eeeCCeEEeC
Q 036788 259 CMHGNNITMH 268 (352)
Q Consensus 259 ~~~~~~~~mH 268 (352)
...++.+.++
T Consensus 312 ~~~~~~~~~~ 321 (331)
T PF14516_consen 312 KRDGNQLEVR 321 (331)
T ss_pred EEeCCEEEEE
Confidence 9987776654
No 29
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.21 E-value=9.2e-05 Score=65.21 Aligned_cols=50 Identities=24% Similarity=0.425 Sum_probs=41.1
Q ss_pred CcccchhhHHHHHHHhcC---CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLGA---GSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
+|||.++..++|.=++.. ..+..--+.++|+||.||||||.-+++.+..+
T Consensus 27 efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 27 EFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred HhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 799999999988777762 22346788999999999999999999987544
No 30
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.18 E-value=1.4e-05 Score=83.01 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=39.7
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++||+.+++++.+.|... ...-+.++|.+|+|||++|..+++++..
T Consensus 179 ~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred cCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 7999999999999998732 3345669999999999999999998643
No 31
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.18 E-value=6.6e-06 Score=76.66 Aligned_cols=89 Identities=20% Similarity=0.133 Sum_probs=60.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCC----------HH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSN-FEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILD----------IA 119 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~----------~~ 119 (352)
+.++|+|.+|+|||||++.+++.+... |+..+|+..+++ .+..+.++++.++..+.....+.+. .+
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE---R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE---RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC---CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 578999999999999999999986554 998899884432 2267888888885443333221111 11
Q ss_pred HHHH-HhCCCcEEEEEeCCCChHH
Q 036788 120 LSFR-RLSSRKFLIVLDDETCFKQ 142 (352)
Q Consensus 120 ~l~~-~l~~k~~LlVlDdv~~~~~ 142 (352)
.... .-.+++++|++|++.....
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ar 269 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRLAR 269 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHHHH
Confidence 1111 2368999999999975543
No 32
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.16 E-value=1.4e-05 Score=81.84 Aligned_cols=47 Identities=26% Similarity=0.291 Sum_probs=39.4
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++||+++++++.+.|... ...-+.++|.+|+|||++|+.+++++..
T Consensus 183 ~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred cccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 6999999999999988733 2335679999999999999999998643
No 33
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=0.00022 Score=69.70 Aligned_cols=47 Identities=32% Similarity=0.260 Sum_probs=39.7
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
+++|.+...+.|..++..+. -...+.++|++|+||||+|+.+++.+.
T Consensus 15 dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred HhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 79999999999999887432 245679999999999999999999763
No 34
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.12 E-value=2.5e-05 Score=80.86 Aligned_cols=47 Identities=15% Similarity=0.257 Sum_probs=39.5
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++||+++++++.+.|... ...-+.++|.+|+||||+|..+++++..
T Consensus 188 ~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred cccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999999988732 3335569999999999999999998743
No 35
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=0.00025 Score=72.38 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=44.0
Q ss_pred HHhhcCCCCCCCCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 14 LKRLAEVSPCSNKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 14 ~~~~~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++.+|... + .+||.+..++.|.+++..+. -...+.++|++|+||||+|+.+++.+.
T Consensus 7 aeKyRP~tF---d-dIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 7 ARKWRPATF---E-QMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred HHHhCCCCH---H-HhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 345554333 5 79999999999999887332 245668999999999999999999764
No 36
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=0.00025 Score=70.19 Aligned_cols=46 Identities=33% Similarity=0.335 Sum_probs=39.9
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+||.+...+.|.+++..+. -...+.++|++|+||||+|+.+++.+
T Consensus 16 dVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 16 ELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999997432 24688899999999999999999875
No 37
>PF13173 AAA_14: AAA domain
Probab=98.05 E-value=2.3e-05 Score=62.19 Aligned_cols=78 Identities=13% Similarity=0.168 Sum_probs=47.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCCHHHHHHHhCCCcE
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILDIALSFRRLSSRKF 130 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~ 130 (352)
+++.|.|+.|+|||||+++++++.. .....+++. ..+ .......... + .+.+.+....++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~--------~~~~~~~~~~-------~--~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDD--------PRDRRLADPD-------L--LEYFLELIKPGKK 63 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCC--------HHHHHHhhhh-------h--HHHHHHhhccCCc
Confidence 5899999999999999999998765 223445554 211 1110000000 0 2233333444778
Q ss_pred EEEEeCCCChHHHHHhh
Q 036788 131 LIVLDDETCFKQIKSLI 147 (352)
Q Consensus 131 LlVlDdv~~~~~~~~l~ 147 (352)
++++|++....+|...+
T Consensus 64 ~i~iDEiq~~~~~~~~l 80 (128)
T PF13173_consen 64 YIFIDEIQYLPDWEDAL 80 (128)
T ss_pred EEEEehhhhhccHHHHH
Confidence 89999998776665543
No 38
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.05 E-value=3.6e-05 Score=79.90 Aligned_cols=46 Identities=26% Similarity=0.404 Sum_probs=39.1
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++||+++++++.+.|... ...-+.++|.+|+|||++|..+++++.
T Consensus 180 ~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 180 PVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 6999999999999999733 233456999999999999999999864
No 39
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00021 Score=67.18 Aligned_cols=47 Identities=30% Similarity=0.354 Sum_probs=40.0
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+..++.+.+.+..+. -...+.++|++|+||||+|+.+++.+.
T Consensus 17 ~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 79999999999999887432 345778999999999999999999763
No 40
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.03 E-value=1.6e-05 Score=72.14 Aligned_cols=101 Identities=19% Similarity=0.268 Sum_probs=59.7
Q ss_pred CcccchhhHHH---HHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHH
Q 036788 28 QLVEVESRVEE---IESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQIL 104 (352)
Q Consensus 28 ~~vGR~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~l 104 (352)
++||.+..+.+ |.+.+. .+..+.+.+||++|+||||||+.++..-+.+- ..|+. ++..+ ....+ .+.+
T Consensus 139 dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve-lSAt~---a~t~d-vR~i 209 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE-LSATN---AKTND-VRDI 209 (554)
T ss_pred HhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE-Eeccc---cchHH-HHHH
Confidence 57776665533 333333 45678888999999999999999998765542 33444 22111 12222 2233
Q ss_pred HHHHhcccccCCCHHHHHHHhCCCcEEEEEeCCC--ChHHHHHhhc
Q 036788 105 LSKLLQEKNAILDIALSFRRLSSRKFLIVLDDET--CFKQIKSLIG 148 (352)
Q Consensus 105 l~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~l~~ 148 (352)
+.+. .=...+.++|.+|++|.|. +..|-+.|++
T Consensus 210 fe~a-----------q~~~~l~krkTilFiDEiHRFNksQQD~fLP 244 (554)
T KOG2028|consen 210 FEQA-----------QNEKSLTKRKTILFIDEIHRFNKSQQDTFLP 244 (554)
T ss_pred HHHH-----------HHHHhhhcceeEEEeHHhhhhhhhhhhcccc
Confidence 2221 1112346789999999995 4455555553
No 41
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.03 E-value=3.4e-05 Score=80.35 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=39.4
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++||+.+++++.+.|... ...-+.++|.+|+|||++|..+++++..
T Consensus 174 ~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred cCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 6999999999999998733 2334558999999999999999998754
No 42
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.02 E-value=2.2e-05 Score=68.61 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=40.3
Q ss_pred Cccc--chhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 28 QLVE--VESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 28 ~~vG--R~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
+|++ .+..++.+.+++. ......+.|+|.+|+|||+||+.++++........+++.
T Consensus 16 ~~~~~~~~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~ 73 (226)
T TIGR03420 16 NFYAGGNAELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP 73 (226)
T ss_pred CcCcCCcHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Confidence 5663 3446677777765 234568889999999999999999998765544445554
No 43
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00055 Score=65.74 Aligned_cols=47 Identities=26% Similarity=0.429 Sum_probs=39.7
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+||.+..+..|..++..+. -...+.++|++|+||||+|+.+++.+.
T Consensus 19 dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 19 DVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred HHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 79999999999999987433 234688999999999999999999754
No 44
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=0.00042 Score=69.17 Aligned_cols=46 Identities=35% Similarity=0.432 Sum_probs=39.6
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
++||.+..++.|.+++..+. -...+.++|.+|+||||+|+.+++.+
T Consensus 17 dIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred HHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 79999999999999987432 24578899999999999999999864
No 45
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.01 E-value=3.5e-05 Score=70.42 Aligned_cols=109 Identities=23% Similarity=0.345 Sum_probs=77.2
Q ss_pred CcccchhhHHHHHHHhcCCCCC-eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHH
Q 036788 28 QLVEVESRVEEIESLLGAGSKD-VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLS 106 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~ 106 (352)
.+.+|+.+++.+..++...+.. +..|-|+|-.|.|||.+.+++.+.... ..+|+..+. . +....++..|+.
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~~e----c-ft~~~lle~IL~ 78 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNCVE----C-FTYAILLEKILN 78 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeehHH----h-ccHHHHHHHHHH
Confidence 7999999999999999755554 455699999999999999999987633 346876332 2 888999999998
Q ss_pred HHh-cccc--cCCC--------HHHHHHH--h--CCCcEEEEEeCCCChHHHH
Q 036788 107 KLL-QEKN--AILD--------IALSFRR--L--SSRKFLIVLDDETCFKQIK 144 (352)
Q Consensus 107 ~l~-~~~~--~~~~--------~~~l~~~--l--~~k~~LlVlDdv~~~~~~~ 144 (352)
+.. .+.. .... ...+.++ . +++.++|||||++...+.+
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~ 131 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMD 131 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccc
Confidence 885 2222 1111 2233331 1 2468999999998665433
No 46
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00047 Score=67.48 Aligned_cols=46 Identities=24% Similarity=0.270 Sum_probs=39.5
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
++||.+..++.|.+++..+. -...+.++|++|+||||+|+.+++.+
T Consensus 17 divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred HhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999997432 24567899999999999999999965
No 47
>PRK04195 replication factor C large subunit; Provisional
Probab=98.00 E-value=2.1e-05 Score=76.86 Aligned_cols=48 Identities=27% Similarity=0.394 Sum_probs=40.9
Q ss_pred CcccchhhHHHHHHHhcCC--CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAG--SKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+..++.+.+|+... ....+.+.|+|++|+||||+|+.+++++.
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 7999999999999998632 12267899999999999999999999873
No 48
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.00 E-value=0.00011 Score=62.82 Aligned_cols=97 Identities=21% Similarity=0.294 Sum_probs=62.5
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh-hCCCCceEEEeeccccccCCCChHHHHHHHHH
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI-SSNFEGSCCHQNVREESRRPGGLGCLQQILLS 106 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~-~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~ 106 (352)
++||-++-++.+.-.-. +++.+-+.|.||||+||||-+..+++.+ ...|...+.--+ .|.. .++.-+...|-.
T Consensus 28 dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN---ASde-RGIDvVRn~IK~ 101 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN---ASDE-RGIDVVRNKIKM 101 (333)
T ss_pred HhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc---Cccc-cccHHHHHHHHH
Confidence 79999999999887665 4456788899999999999999999975 334443333222 2333 555555554422
Q ss_pred HHhcccccCCCHHHHHHHhCCCcEEEEEeCCCCh
Q 036788 107 KLLQEKNAILDIALSFRRLSSRKFLIVLDDETCF 140 (352)
Q Consensus 107 ~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 140 (352)
-.. ..-.. -.++.-++|||..++.
T Consensus 102 FAQ-~kv~l---------p~grhKIiILDEADSM 125 (333)
T KOG0991|consen 102 FAQ-KKVTL---------PPGRHKIIILDEADSM 125 (333)
T ss_pred HHH-hhccC---------CCCceeEEEeeccchh
Confidence 111 00011 1245668899999865
No 49
>PRK06893 DNA replication initiation factor; Validated
Probab=97.98 E-value=2.7e-05 Score=68.30 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=29.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+.+.|+|.+|+|||+|++++++..........|+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 467899999999999999999998765555566665
No 50
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=2.6e-05 Score=69.67 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=59.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh----hCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCCHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI----SSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILDIALSFRRL 125 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~----~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l 125 (352)
-++|.++|+||.|||+|++++++++ .++|..+..+. -+...++..+.+.-+..-..+ .+.+.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE---------inshsLFSKWFsESgKlV~km--F~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE---------INSHSLFSKWFSESGKLVAKM--FQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE---------EehhHHHHHHHhhhhhHHHHH--HHHHHHHH
Confidence 4799999999999999999999964 45566666665 223444444443322221111 44556666
Q ss_pred CCCc--EEEEEeCCCChHHHHHhhccCCchhHHHHHH
Q 036788 126 SSRK--FLIVLDDETCFKQIKSLIGSHGFEELSSRVI 160 (352)
Q Consensus 126 ~~k~--~LlVlDdv~~~~~~~~l~~~~~~~~~~~~i~ 160 (352)
.++. +.+.+|.|.+....+.-..++..+..+.+++
T Consensus 246 ~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvV 282 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVV 282 (423)
T ss_pred hCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHH
Confidence 5554 4555798876655554443443333333333
No 51
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.0012 Score=65.68 Aligned_cols=55 Identities=24% Similarity=0.278 Sum_probs=43.1
Q ss_pred HhhcCCCCCCCCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 15 KRLAEVSPCSNKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 15 ~~~~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
++.+|... + ++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+++.+
T Consensus 8 ~KyRP~~f---~-dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 8 RKYRPRSF---S-EMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred HHHCCCCH---H-HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45454333 5 79999999999999987432 34677899999999999999998864
No 52
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.94 E-value=0.00042 Score=63.81 Aligned_cols=47 Identities=30% Similarity=0.319 Sum_probs=39.7
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
+++|++..++.+.+++..+ ..+.+.++|.+|+||||+|+.+++.+..
T Consensus 18 ~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred HhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 6999999999999998743 3345799999999999999999998643
No 53
>PLN03025 replication factor C subunit; Provisional
Probab=97.94 E-value=3.1e-05 Score=71.56 Aligned_cols=46 Identities=24% Similarity=0.272 Sum_probs=38.5
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.++.++.|.+++.. +..+.+.++|++|+||||+|..+++.+.
T Consensus 14 ~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARD--GNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred HhcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 799999999999888763 3344577999999999999999999863
No 54
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.89 E-value=3.6e-05 Score=78.02 Aligned_cols=49 Identities=27% Similarity=0.435 Sum_probs=38.9
Q ss_pred CcccchhhHH---HHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 28 QLVEVESRVE---EIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 28 ~~vGR~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
.|+|.+..+. .+.+.+. .+....+.++|++|+||||||+.+++.....|
T Consensus 29 d~vGQe~ii~~~~~L~~~i~--~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f 80 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIK--ADRVGSLILYGPPGVGKTTLARIIANHTRAHF 80 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 6999998884 4666665 33455678999999999999999999876554
No 55
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00022 Score=71.08 Aligned_cols=56 Identities=25% Similarity=0.283 Sum_probs=43.5
Q ss_pred HHhhcCCCCCCCCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 14 LKRLAEVSPCSNKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 14 ~~~~~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++.+|... + .+||.+..++.|.+.+..+. -...+.++|..|+||||+|+.+++.+
T Consensus 7 a~KyRP~~f---~-divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 7 ARKWRPQTF---A-EVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred HHHhCCCCH---H-HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 345444332 5 79999999999999887432 24567899999999999999999865
No 56
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.86 E-value=6.2e-05 Score=59.57 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=21.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 036788 53 LGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 53 v~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
|.|+|++|+|||++|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999975
No 57
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.0019 Score=63.88 Aligned_cols=46 Identities=26% Similarity=0.214 Sum_probs=39.6
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|++..++.+.+.+..+. ..+.+.++|++|+||||+|+.+++.+
T Consensus 17 dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 17 QIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999886332 24678899999999999999999975
No 58
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.002 Score=62.49 Aligned_cols=46 Identities=26% Similarity=0.257 Sum_probs=38.6
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
++||.+..++.|.+.+..+. -...+.++|++|+||||+|+.++..+
T Consensus 14 dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 14 DLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHH
Confidence 79999999999998887332 23578899999999999999998854
No 59
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00012 Score=70.79 Aligned_cols=56 Identities=23% Similarity=0.202 Sum_probs=42.6
Q ss_pred HHhhcCCCCCCCCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 14 LKRLAEVSPCSNKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 14 ~~~~~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+++.+|... + .+||.+...+.|...+..+. -...+.++|++|+||||+|+.+++.+
T Consensus 5 ~~kyRP~~~---~-divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 5 YRKYRPKTF---S-EVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred HHHHCCCCH---H-HccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344444333 5 79999999888888876332 23568899999999999999999875
No 60
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.82 E-value=0.00058 Score=61.36 Aligned_cols=107 Identities=15% Similarity=0.063 Sum_probs=72.2
Q ss_pred Ccccchhh---HHHHHHHhcCC-CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC------ceEEEeeccccccCCCCh
Q 036788 28 QLVEVESR---VEEIESLLGAG-SKDVYALGIWGIGGIGKTTIARAIFDKISSNFE------GSCCHQNVREESRRPGGL 97 (352)
Q Consensus 28 ~~vGR~~~---~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~s~~~~~~ 97 (352)
.+||-... ++.|.++|... ....+-+.|+|.+|.|||++++++....-..++ .++.+. .... ++.
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~-p~~ 109 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPE-PDE 109 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCC-CCh
Confidence 68886443 45666666643 345678999999999999999999987544332 122332 3444 888
Q ss_pred HHHHHHHHHHHhcccccCCC----HHHHHHHhCC-CcEEEEEeCCCC
Q 036788 98 GCLQQILLSKLLQEKNAILD----IALSFRRLSS-RKFLIVLDDETC 139 (352)
Q Consensus 98 ~~l~~~ll~~l~~~~~~~~~----~~~l~~~l~~-k~~LlVlDdv~~ 139 (352)
..+...|+..++.+...-.. .......++. +--+||+|++.+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 99999999999988763222 2223344443 445889999965
No 61
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.80 E-value=8.4e-05 Score=70.52 Aligned_cols=102 Identities=17% Similarity=0.093 Sum_probs=62.4
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC--CCCceEEEeeccccccCCCChHHHHHHHH
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS--NFEGSCCHQNVREESRRPGGLGCLQQILL 105 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~s~~~~~~~~l~~~ll 105 (352)
++++.+..++.+...|..+ +.+.++|++|+|||++|+++++.+.. .|..+.|+. +... .+..++...+-
T Consensus 176 d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHps-ySYeDFI~G~r 246 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQS-YSYEDFIQGYR 246 (459)
T ss_pred cccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----eccc-ccHHHHhcccC
Confidence 5778888999998888733 36778999999999999999998754 345555655 3333 44444332220
Q ss_pred HHHhcccccCCC---HHHHHHHh--CCCcEEEEEeCCCCh
Q 036788 106 SKLLQEKNAILD---IALSFRRL--SSRKFLIVLDDETCF 140 (352)
Q Consensus 106 ~~l~~~~~~~~~---~~~l~~~l--~~k~~LlVlDdv~~~ 140 (352)
- ....-.... .+.+.... ..++++||+|++...
T Consensus 247 P--~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 247 P--NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred C--CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0 000001111 22233322 246899999999744
No 62
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00046 Score=67.93 Aligned_cols=46 Identities=30% Similarity=0.335 Sum_probs=39.1
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+++|.+..++.+.+++..+. -...+.++|++|+||||+|+.+++.+
T Consensus 17 divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999987332 23567899999999999999999875
No 63
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.79 E-value=5.5e-05 Score=71.22 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=40.1
Q ss_pred CcccchhhHHHHHHHhcCC--C---------CCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLGAG--S---------KDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~--~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.+.|++.+++++.+.+... . ...+-+.++|++|+|||++|+++++.....
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~ 183 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 183 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 7899999999998876421 1 224568999999999999999999987654
No 64
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.78 E-value=0.00015 Score=64.59 Aligned_cols=88 Identities=17% Similarity=0.230 Sum_probs=57.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc-----cCCC-------
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN-----AILD------- 117 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~------- 117 (352)
-+.++|.|.+|+|||||++.+++.++.+|+..+++..+++-. ..+.++.+.+...-..... ...+
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~---~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERT---REGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc---HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 357899999999999999999999988888777776554432 3355666655432111110 0111
Q ss_pred ----HHHHHHHh---CCCcEEEEEeCCCCh
Q 036788 118 ----IALSFRRL---SSRKFLIVLDDETCF 140 (352)
Q Consensus 118 ----~~~l~~~l---~~k~~LlVlDdv~~~ 140 (352)
.-.+.+++ .++.+|+++||+...
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 22233444 389999999998543
No 65
>PRK12377 putative replication protein; Provisional
Probab=97.78 E-value=0.00017 Score=63.79 Aligned_cols=73 Identities=18% Similarity=0.124 Sum_probs=45.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCCHHHHHHHhCCCc
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILDIALSFRRLSSRK 129 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~ 129 (352)
...+.++|.+|+|||.||.++++.+......+.|+. ..++...+-....... ....+.+.+ .+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~-----------~~~l~~~l~~~~~~~~----~~~~~l~~l-~~~ 164 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT-----------VPDVMSRLHESYDNGQ----SGEKFLQEL-CKV 164 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE-----------HHHHHHHHHHHHhccc----hHHHHHHHh-cCC
Confidence 457899999999999999999998766544455554 2334444433221110 112223333 355
Q ss_pred EEEEEeCCC
Q 036788 130 FLIVLDDET 138 (352)
Q Consensus 130 ~LlVlDdv~ 138 (352)
-|||+||+.
T Consensus 165 dLLiIDDlg 173 (248)
T PRK12377 165 DLLVLDEIG 173 (248)
T ss_pred CEEEEcCCC
Confidence 689999994
No 66
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00037 Score=68.44 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=39.5
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+..++.|...+..+ .....+.++|++|+||||+|+.+++.+.
T Consensus 17 diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred HhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 7999999999999988743 2345678999999999999999998653
No 67
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.75 E-value=7.4e-05 Score=70.86 Aligned_cols=49 Identities=20% Similarity=0.381 Sum_probs=39.5
Q ss_pred CcccchhhHHHHHHHhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGA-----------GSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.+.|++.+++++.+.+.. +-..++-|.++|++|+|||++|++++++...
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~ 191 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA 191 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC
Confidence 688999999999886631 1133567899999999999999999998654
No 68
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.74 E-value=6e-05 Score=73.14 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=39.6
Q ss_pred CcccchhhHHHHHHHhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLGA-----------GSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.+.|.+..++++.+.+.. +-...+-+.++|++|+|||++|+++++.+...
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 688899999998886531 11235568899999999999999999987654
No 69
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.0029 Score=62.83 Aligned_cols=47 Identities=32% Similarity=0.316 Sum_probs=39.7
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.++..+-
T Consensus 14 eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 79999999999999997432 245678999999999999999998753
No 70
>PRK08116 hypothetical protein; Validated
Probab=97.74 E-value=0.00032 Score=62.97 Aligned_cols=74 Identities=24% Similarity=0.254 Sum_probs=45.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCCHHHHHHHhCCCcE
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILDIALSFRRLSSRKF 130 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~ 130 (352)
.-+.++|.+|+|||.||.++++.+..+...++|+. ...++..+......... .....+.+.+..-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~~~--~~~~~~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSSGK--EDENEIIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhcccc--ccHHHHHHHhcCCC-
Confidence 35789999999999999999998765533444443 23444444433322111 11233444454444
Q ss_pred EEEEeCCC
Q 036788 131 LIVLDDET 138 (352)
Q Consensus 131 LlVlDdv~ 138 (352)
||||||+.
T Consensus 181 lLviDDlg 188 (268)
T PRK08116 181 LLILDDLG 188 (268)
T ss_pred EEEEeccc
Confidence 89999994
No 71
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.73 E-value=0.00012 Score=57.97 Aligned_cols=35 Identities=31% Similarity=0.309 Sum_probs=27.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
..+.|+|++|+||||+++.++..+.......+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 47899999999999999999998766543344443
No 72
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.0024 Score=60.86 Aligned_cols=47 Identities=26% Similarity=0.314 Sum_probs=39.4
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+...+.|.+++..+. -...+.++|++|+||||+|..+++.+.
T Consensus 17 eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred hccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 79999999999999887432 234688999999999999999999763
No 73
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.00048 Score=67.12 Aligned_cols=46 Identities=28% Similarity=0.247 Sum_probs=38.9
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+++|.+..++.|...+..+. -...+.++|++|+||||+|+.+++.+
T Consensus 22 dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999988776332 24678899999999999999999975
No 74
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.71 E-value=0.0002 Score=66.45 Aligned_cols=102 Identities=16% Similarity=0.123 Sum_probs=63.3
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC-ceEEEeeccccccCCCChHHHHHHHHHHHhccccc
Q 036788 36 VEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFE-GSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNA 114 (352)
Q Consensus 36 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~ 114 (352)
..++++.+..-.. -+.+.|+|.+|+|||||++.+++.+....+ ..+++.-+ .+.+..+.++.+.+...+.....+
T Consensus 120 ~~RvID~l~PiGk-GQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lI---gER~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 120 SMRVVDLVAPIGK-GQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLI---DERPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred hHhhhhheeecCC-CceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEe---cCCCCCHHHHHHHHhhhEEeecCC
Confidence 3456666653222 246689999999999999999998766543 33333223 333366788888887766544321
Q ss_pred CCC---------HHHHHHHh--CCCcEEEEEeCCCChH
Q 036788 115 ILD---------IALSFRRL--SSRKFLIVLDDETCFK 141 (352)
Q Consensus 115 ~~~---------~~~l~~~l--~~k~~LlVlDdv~~~~ 141 (352)
.+. ...+.+++ .+++++||+|++....
T Consensus 196 e~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A 233 (380)
T PRK12608 196 RPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLA 233 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHH
Confidence 111 11111121 5899999999996443
No 75
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.00078 Score=63.76 Aligned_cols=47 Identities=28% Similarity=0.257 Sum_probs=39.5
Q ss_pred CcccchhhHHHHHHHhcCCCC--------CeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSK--------DVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|.+..++.|.+.+..+.. -...+.++|++|+|||++|..++..+
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 689999999999999875431 24678899999999999999999864
No 76
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.0025 Score=59.80 Aligned_cols=46 Identities=24% Similarity=0.171 Sum_probs=39.3
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|.+...+.|.+.+..+. -...+.++|+.|+||+|+|..+++.+
T Consensus 20 ~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 20 ALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred hccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999887432 24578899999999999999999975
No 77
>PRK08727 hypothetical protein; Validated
Probab=97.68 E-value=0.00026 Score=62.30 Aligned_cols=56 Identities=20% Similarity=0.238 Sum_probs=37.2
Q ss_pred Ccccchhh-HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 28 QLVEVESR-VEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 28 ~~vGR~~~-~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
+|++.... +..+..... + .....+.|+|.+|+|||.|++++++..........|+.
T Consensus 20 ~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred hccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 56665543 333333332 1 22346999999999999999999998766544555654
No 78
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.65 E-value=0.00013 Score=65.36 Aligned_cols=48 Identities=27% Similarity=0.327 Sum_probs=34.6
Q ss_pred CcccchhhHHHHHHHhc----------C---CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLG----------A---GSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~----------~---~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+...++|.+... . ..+...-+.++|++|+||||+|+.+++.+.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 57888877766654321 0 113356788999999999999999998753
No 79
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.64 E-value=0.00036 Score=67.60 Aligned_cols=94 Identities=17% Similarity=0.137 Sum_probs=53.6
Q ss_pred cccchhh--HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCce--EEEeeccccccCCCChHHHHHHH
Q 036788 29 LVEVESR--VEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGS--CCHQNVREESRRPGGLGCLQQIL 104 (352)
Q Consensus 29 ~vGR~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~--~~~~~~~~~s~~~~~~~~l~~~l 104 (352)
++|.... ......+..........+.|+|.+|+|||+|++++++.+...++.. +|+. ...+...+
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~~ 193 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTNDF 193 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHH
Confidence 4565443 2333333332222345688999999999999999999987766432 3332 23333444
Q ss_pred HHHHhcccccCCCHHHHHHHhCCCcEEEEEeCCCC
Q 036788 105 LSKLLQEKNAILDIALSFRRLSSRKFLIVLDDETC 139 (352)
Q Consensus 105 l~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 139 (352)
...+... ....+.+.++ +.-+|++||++.
T Consensus 194 ~~~~~~~-----~~~~~~~~~~-~~dlLiiDDi~~ 222 (450)
T PRK00149 194 VNALRNN-----TMEEFKEKYR-SVDVLLIDDIQF 222 (450)
T ss_pred HHHHHcC-----cHHHHHHHHh-cCCEEEEehhhh
Confidence 4443211 1233444444 344888999963
No 80
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.63 E-value=0.00042 Score=61.75 Aligned_cols=63 Identities=22% Similarity=0.217 Sum_probs=49.3
Q ss_pred CCCCCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh--CCCCceEEEeec
Q 036788 22 PCSNKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS--SNFEGSCCHQNV 87 (352)
Q Consensus 22 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~--~~f~~~~~~~~~ 87 (352)
|..-+ .++|.+..+..|.+.+.. ...+....+|++|.|||+-|+.++.++- +-|++++.-.+.
T Consensus 32 Pkt~d-e~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna 96 (346)
T KOG0989|consen 32 PKTFD-ELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA 96 (346)
T ss_pred CCcHH-hhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc
Confidence 33345 799999999999998874 5678899999999999999999999753 347776654443
No 81
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.63 E-value=0.00013 Score=67.23 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=41.3
Q ss_pred CCCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 24 SNKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 24 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..+ .++|.+...+.+.+++..+ .-..++.++|++|+|||++|+.+++...
T Consensus 19 ~~~-~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 19 TID-ECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred cHH-HhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 335 7999999999999998732 2356778899999999999999998764
No 82
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.62 E-value=0.00047 Score=60.02 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=55.2
Q ss_pred CcccchhhH-HHHHHHh-cCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCc--eEEEeeccccccCCCChHHHHHH
Q 036788 28 QLVEVESRV-EEIESLL-GAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEG--SCCHQNVREESRRPGGLGCLQQI 103 (352)
Q Consensus 28 ~~vGR~~~~-~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~s~~~~~~~~l~~~ 103 (352)
.++|-..+. -.....+ .........+.|+|..|+|||.|.+++++.+....+. ++|+. ..++...
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~~~ 78 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFIRE 78 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHHHH
Confidence 345753332 3333333 3323334567899999999999999999987654432 33443 3444555
Q ss_pred HHHHHhcccccCCCHHHHHHHhCCCcEEEEEeCCCCh
Q 036788 104 LLSKLLQEKNAILDIALSFRRLSSRKFLIVLDDETCF 140 (352)
Q Consensus 104 ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 140 (352)
+...+... ....++..++. -=+|++||++..
T Consensus 79 ~~~~~~~~-----~~~~~~~~~~~-~DlL~iDDi~~l 109 (219)
T PF00308_consen 79 FADALRDG-----EIEEFKDRLRS-ADLLIIDDIQFL 109 (219)
T ss_dssp HHHHHHTT-----SHHHHHHHHCT-SSEEEEETGGGG
T ss_pred HHHHHHcc-----cchhhhhhhhc-CCEEEEecchhh
Confidence 54444331 14455566653 346778999643
No 83
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.62 E-value=0.00041 Score=66.86 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=46.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCc--eEEEeeccccccCCCChHHHHHHHHHHHhcccccCCCHHHHHHHhCC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEG--SCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILDIALSFRRLSS 127 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~ 127 (352)
..-+.|+|.+|+|||+|++++++.+...++. ++|+. ...+...+...+... ....+.+....
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~~~~~~~~~~-----~~~~f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDLVDSMKEG-----KLNEFREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHhcc-----cHHHHHHHHHh
Confidence 4458999999999999999999987665432 33433 234444554443221 12334444444
Q ss_pred CcEEEEEeCCCC
Q 036788 128 RKFLIVLDDETC 139 (352)
Q Consensus 128 k~~LlVlDdv~~ 139 (352)
+.-+|++||++.
T Consensus 194 ~~dvLlIDDi~~ 205 (440)
T PRK14088 194 KVDVLLIDDVQF 205 (440)
T ss_pred cCCEEEEechhh
Confidence 456899999964
No 84
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.61 E-value=0.00042 Score=61.15 Aligned_cols=89 Identities=13% Similarity=0.131 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccccC
Q 036788 36 VEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAI 115 (352)
Q Consensus 36 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~ 115 (352)
+..+.++...-..+...+.++|.+|+|||+||.++++.+...-..++++. +.++...+-..... ..
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it-----------~~~l~~~l~~~~~~--~~- 150 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT-----------VADIMSAMKDTFSN--SE- 150 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-----------HHHHHHHHHHHHhh--cc-
Confidence 34444444322233457889999999999999999998765544445553 23344333322211 00
Q ss_pred CCHHHHHHHhCCCcEEEEEeCCCC
Q 036788 116 LDIALSFRRLSSRKFLIVLDDETC 139 (352)
Q Consensus 116 ~~~~~l~~~l~~k~~LlVlDdv~~ 139 (352)
.....+.+.+. +.=+||+||+..
T Consensus 151 ~~~~~~l~~l~-~~dlLvIDDig~ 173 (244)
T PRK07952 151 TSEEQLLNDLS-NVDLLVIDEIGV 173 (244)
T ss_pred ccHHHHHHHhc-cCCEEEEeCCCC
Confidence 11223444455 344788899953
No 85
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.60 E-value=0.0001 Score=68.07 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=41.7
Q ss_pred CcccchhhHHHHHHHhcCC----CCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAG----SKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++|.++.++++.+++... +...+++.++|++|+||||||..+++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999999998632 234689999999999999999999997644
No 86
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0015 Score=60.10 Aligned_cols=46 Identities=28% Similarity=0.269 Sum_probs=39.1
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|.+...+.+.+.+..+ .-...+.++|+.|+||||+|+.+++.+
T Consensus 5 ~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l 50 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKI 50 (313)
T ss_pred hccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHH
Confidence 6899999999999998733 234678899999999999999999975
No 87
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.58 E-value=6.6e-05 Score=58.68 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+|+|.|++|+||||+|+.++++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 88
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.0046 Score=61.93 Aligned_cols=47 Identities=28% Similarity=0.378 Sum_probs=39.7
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+||.+..++.|..++..+. -...+.++|.+|+||||+|+.+++.+.
T Consensus 17 eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 17 ELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred HhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 79999999999999887432 245678999999999999999998763
No 89
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.58 E-value=0.00022 Score=72.75 Aligned_cols=45 Identities=27% Similarity=0.291 Sum_probs=37.9
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++||+.+++++.+.|.... ..-+.++|.+|+|||++|+.+++++
T Consensus 187 ~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999887432 2344689999999999999999875
No 90
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.57 E-value=0.00052 Score=64.49 Aligned_cols=108 Identities=16% Similarity=0.197 Sum_probs=72.0
Q ss_pred CcccchhhHHHHHHHhcC--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCc--eEEEeeccccccCCCChHHHHHH
Q 036788 28 QLVEVESRVEEIESLLGA--GSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEG--SCCHQNVREESRRPGGLGCLQQI 103 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~s~~~~~~~~l~~~ 103 (352)
.++||+.++..+.+|+.. .....+.+=|.|-+|.|||.+...++.+....... ++++...+ . .....++..
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~s-l----~~~~aiF~k 225 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTS-L----TEASAIFKK 225 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecc-c----cchHHHHHH
Confidence 899999999999999873 33446778899999999999999999987665443 35554221 1 334556666
Q ss_pred HHHHHh----cccccCCCHHHHHHHhCC--CcEEEEEeCCCCh
Q 036788 104 LLSKLL----QEKNAILDIALSFRRLSS--RKFLIVLDDETCF 140 (352)
Q Consensus 104 ll~~l~----~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~ 140 (352)
|...+. .+.........+.....+ +.+|+|+|..+..
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L 268 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHL 268 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHH
Confidence 665552 222221114555555544 3589999998744
No 91
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.57 E-value=0.0022 Score=60.11 Aligned_cols=47 Identities=26% Similarity=0.331 Sum_probs=39.7
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+..++.+.+.+..+. -...+.++|++|+||||+|+.+++.+.
T Consensus 15 ~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred hccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 78999999999999887332 245788999999999999999998753
No 92
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.56 E-value=0.005 Score=63.62 Aligned_cols=46 Identities=26% Similarity=0.299 Sum_probs=39.4
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+||.+..++.|...+..+. -...+.++|..|+||||+|+.+++.+
T Consensus 16 eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999987432 23568899999999999999999975
No 93
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.55 E-value=0.00064 Score=64.97 Aligned_cols=73 Identities=22% Similarity=0.195 Sum_probs=45.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCc--eEEEeeccccccCCCChHHHHHHHHHHHhcccccCCCHHHHHHHhCC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEG--SCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILDIALSFRRLSS 127 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~ 127 (352)
...+.|+|.+|+|||+|++++++.+....+. ++|+. ...+...+...+... ....+.+.++.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-----------SEKFTNDFVNALRNN-----KMEEFKEKYRS 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-----------HHHHHHHHHHHHHcC-----CHHHHHHHHHh
Confidence 3568899999999999999999987765432 33433 233334444443321 12333444433
Q ss_pred CcEEEEEeCCCC
Q 036788 128 RKFLIVLDDETC 139 (352)
Q Consensus 128 k~~LlVlDdv~~ 139 (352)
.-+|++||++.
T Consensus 200 -~dlLiiDDi~~ 210 (405)
T TIGR00362 200 -VDLLLIDDIQF 210 (405)
T ss_pred -CCEEEEehhhh
Confidence 33788999964
No 94
>PRK08118 topology modulation protein; Reviewed
Probab=97.55 E-value=0.00027 Score=58.77 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=26.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC---CCCceEEE
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISS---NFEGSCCH 84 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~---~f~~~~~~ 84 (352)
+.|.|+|++|+||||||+.+++...- +|+..+|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 35889999999999999999998643 35655553
No 95
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00026 Score=68.49 Aligned_cols=91 Identities=21% Similarity=0.257 Sum_probs=57.3
Q ss_pred CcccchhhHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCCh
Q 036788 28 QLVEVESRVEEIESLLGA----------GSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGL 97 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~ 97 (352)
++=|.+..+.++.+++.. +-..++=|.++|+||+|||.||++++.++.-.| +. ++..
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~----isAp---- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS----ISAP---- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee----ecch----
Confidence 577899999888876642 112356788999999999999999999876443 22 1111
Q ss_pred HHHHHHHHHHHhcccc-cCCCHHHHHHHhCCCcEEEEEeCCC
Q 036788 98 GCLQQILLSKLLQEKN-AILDIALSFRRLSSRKFLIVLDDET 138 (352)
Q Consensus 98 ~~l~~~ll~~l~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~ 138 (352)
.+++.+.++.. .+ .+...+.-...++++++|+++
T Consensus 258 -----eivSGvSGESEkki--RelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 -----EIVSGVSGESEKKI--RELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred -----hhhcccCcccHHHH--HHHHHHHhccCCeEEEeeccc
Confidence 22222222222 11 122233335679999999996
No 96
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.54 E-value=0.00034 Score=60.90 Aligned_cols=50 Identities=18% Similarity=0.414 Sum_probs=38.4
Q ss_pred CcccchhhHHHHHHHhc--CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLG--AGSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.++|.+.+.+.|.+-.. .......-+.+||..|+|||++++++.+.....
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 79999999988876432 112234567789999999999999999986653
No 97
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.53 E-value=0.0005 Score=60.12 Aligned_cols=48 Identities=25% Similarity=0.275 Sum_probs=35.8
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 38 EIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 38 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.|-+.|..+-..-.++.|+|.+|+|||++|.+++.........++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 344455433344579999999999999999999987655556677876
No 98
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.52 E-value=0.0093 Score=59.53 Aligned_cols=47 Identities=28% Similarity=0.428 Sum_probs=39.9
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-
T Consensus 25 dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 79999999999999987432 245788999999999999999999753
No 99
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.51 E-value=0.00012 Score=59.13 Aligned_cols=38 Identities=32% Similarity=0.492 Sum_probs=30.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC-CC-ceEEEeecc
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSN-FE-GSCCHQNVR 88 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~-~~~~~~~~~ 88 (352)
--|+|+|+||+||||+++.+++.+++. |. +++|...++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 468999999999999999999988776 75 345555444
No 100
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.51 E-value=0.00029 Score=61.74 Aligned_cols=65 Identities=15% Similarity=0.260 Sum_probs=39.9
Q ss_pred CCCCCCCCCCcc-cchhhH-HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 19 EVSPCSNKNQLV-EVESRV-EEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 19 ~~~~~~~~~~~v-GR~~~~-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
...+..-+ +|+ |..... ..+.++.. +....+.+.|+|.+|+|||+||+.+++.....-....++.
T Consensus 11 ~~~~~~~d-~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 11 PPPPPTFD-NFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred CCChhhhc-ccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 33344445 565 554443 44555444 2233467889999999999999999997643322334443
No 101
>PRK06696 uridine kinase; Validated
Probab=97.50 E-value=0.00022 Score=62.27 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=36.4
Q ss_pred chhhHHHHHHHhcC-CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 32 VESRVEEIESLLGA-GSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 32 R~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
|.+.+++|.+.+.. ..+...+|+|.|.+|+||||||+.+++.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 56667777776643 34567899999999999999999999987543
No 102
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.49 E-value=0.00033 Score=61.32 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=30.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
-.++|.|.+|+|||||+..+.......|+.+.+++
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 36789999999999999999999999997766654
No 103
>PRK05642 DNA replication initiation factor; Validated
Probab=97.48 E-value=0.00062 Score=59.92 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=28.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
..+.|+|.+|+|||.|++++++.+...-..++|+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 57889999999999999999998665434455654
No 104
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.47 E-value=0.00015 Score=67.47 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=40.0
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++|++..++.+.+++.. +..+.+.++|++|+||||+|+.+++.+..
T Consensus 16 ~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 16 DILGQDEVVERLSRAVDS--PNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HhcCCHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 799999999999998873 33446789999999999999999998653
No 105
>PHA00729 NTP-binding motif containing protein
Probab=97.47 E-value=0.0011 Score=57.40 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+...+.|+|.+|+||||||.++++++.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455789999999999999999999864
No 106
>PRK07261 topology modulation protein; Provisional
Probab=97.46 E-value=0.00065 Score=56.75 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 107
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00053 Score=62.40 Aligned_cols=93 Identities=18% Similarity=0.309 Sum_probs=58.5
Q ss_pred CcccchhhHHHHHHHhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCC
Q 036788 28 QLVEVESRVEEIESLLGA-----------GSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGG 96 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~ 96 (352)
.+=|-++++++|.+.... +-+.++=|.+||+||.|||-||++++++... .|+..+ .
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-----tFIrvv----g---- 218 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA-----TFIRVV----G---- 218 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc-----eEEEec----c----
Confidence 455688888888886652 1244677889999999999999999998654 344411 1
Q ss_pred hHHHHHHHHHHHhcccccCCCHHHHHHHhC-CCcEEEEEeCCCCh
Q 036788 97 LGCLQQILLSKLLQEKNAILDIALSFRRLS-SRKFLIVLDDETCF 140 (352)
Q Consensus 97 ~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~ 140 (352)
. ++.+...++...+ ...+.+.-+ ..+.+|++|.++..
T Consensus 219 -S----ElVqKYiGEGaRl--VRelF~lArekaPsIIFiDEIDAI 256 (406)
T COG1222 219 -S----ELVQKYIGEGARL--VRELFELAREKAPSIIFIDEIDAI 256 (406)
T ss_pred -H----HHHHHHhccchHH--HHHHHHHHhhcCCeEEEEechhhh
Confidence 1 2333322222211 333333333 46899999998643
No 108
>PRK07667 uridine kinase; Provisional
Probab=97.43 E-value=0.00039 Score=59.31 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 36 VEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 36 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
++.+.+.+....+...+|+|.|.+|+||||+|..+.+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45566666655556689999999999999999999997754
No 109
>PRK06921 hypothetical protein; Provisional
Probab=97.43 E-value=0.00095 Score=59.86 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=28.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEEe
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSN-FEGSCCHQ 85 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~ 85 (352)
...+.++|.+|+|||.||.++++.+... ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678999999999999999999987655 34455654
No 110
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.40 E-value=0.0043 Score=52.58 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
...+.++|++|+|||++|+.+...+-
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 46788999999999999999999864
No 111
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.40 E-value=0.021 Score=55.72 Aligned_cols=46 Identities=26% Similarity=0.238 Sum_probs=39.2
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|.+...+.+.+.+..+. -...+.++|++|+||||+|+.++..+
T Consensus 17 diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred HccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999997432 24567889999999999999999875
No 112
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.38 E-value=0.0014 Score=60.00 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=52.6
Q ss_pred cchhhHHHHHHHhcCCC--CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHH
Q 036788 31 EVESRVEEIESLLGAGS--KDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKL 108 (352)
Q Consensus 31 GR~~~~~~l~~~L~~~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l 108 (352)
+|........+++..-. ...+-+.|+|.+|+|||.||.++++.+...-..+.|+. +..+...+....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-----------~~~l~~~lk~~~ 203 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-----------FPEFIRELKNSI 203 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-----------HHHHHHHHHHHH
Confidence 34444444555555211 13456889999999999999999998765433445554 233444444333
Q ss_pred hcccccCCCHHHHHHHhCCCcEEEEEeCCC
Q 036788 109 LQEKNAILDIALSFRRLSSRKFLIVLDDET 138 (352)
Q Consensus 109 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 138 (352)
... +.....+.+. +-=||||||+.
T Consensus 204 ~~~-----~~~~~l~~l~-~~dlLiIDDiG 227 (306)
T PRK08939 204 SDG-----SVKEKIDAVK-EAPVLMLDDIG 227 (306)
T ss_pred hcC-----cHHHHHHHhc-CCCEEEEecCC
Confidence 211 1122222232 45588999995
No 113
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.37 E-value=0.0011 Score=64.15 Aligned_cols=75 Identities=21% Similarity=0.284 Sum_probs=46.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCc--eEEEeeccccccCCCChHHHHHHHHHHHhcccccCCCHHHHHHHhCC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEG--SCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILDIALSFRRLSS 127 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~ 127 (352)
..-+.|+|.+|+|||+|++++++.+....+. ++++. ...+...+...+..... ....+.+.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~~~---~~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKTHK---EIEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHhhh---HHHHHHHHhc-
Confidence 3568899999999999999999977643322 23332 34555566555443111 1233444444
Q ss_pred CcEEEEEeCCCC
Q 036788 128 RKFLIVLDDETC 139 (352)
Q Consensus 128 k~~LlVlDdv~~ 139 (352)
..-+||+||+..
T Consensus 206 ~~dvLiIDDiq~ 217 (450)
T PRK14087 206 QNDVLIIDDVQF 217 (450)
T ss_pred cCCEEEEecccc
Confidence 344788999953
No 114
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.0049 Score=61.27 Aligned_cols=46 Identities=24% Similarity=0.225 Sum_probs=39.0
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+++|.+..++.|.+.+..+. -...+.++|++|+||||+|+.+++.+
T Consensus 17 dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999887332 24678899999999999999999875
No 115
>PRK08181 transposase; Validated
Probab=97.35 E-value=0.00084 Score=60.15 Aligned_cols=71 Identities=25% Similarity=0.185 Sum_probs=43.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCCHHHHHHHhCCCcE
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILDIALSFRRLSSRKF 130 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~ 130 (352)
.-+.++|.+|+|||.||.++++......-.+.|+. ..++...+...... .....+.+.+. +.=
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-----------~~~L~~~l~~a~~~-----~~~~~~l~~l~-~~d 169 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-----------TTDLVQKLQVARRE-----LQLESAIAKLD-KFD 169 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-----------HHHHHHHHHHHHhC-----CcHHHHHHHHh-cCC
Confidence 35899999999999999999998765543445543 23444444322110 11222223332 344
Q ss_pred EEEEeCCC
Q 036788 131 LIVLDDET 138 (352)
Q Consensus 131 LlVlDdv~ 138 (352)
|||+||+.
T Consensus 170 LLIIDDlg 177 (269)
T PRK08181 170 LLILDDLA 177 (269)
T ss_pred EEEEeccc
Confidence 99999985
No 116
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.35 E-value=0.027 Score=55.99 Aligned_cols=46 Identities=26% Similarity=0.242 Sum_probs=39.8
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|.+..++.|...+..+. -...+.++|++|+||||+|+.+++.+
T Consensus 17 diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred HccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 79999999999999997432 34578899999999999999999975
No 117
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.027 Score=56.31 Aligned_cols=46 Identities=24% Similarity=0.344 Sum_probs=39.2
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+++|.+...+.|.+.+..+. -...+.++|..|+||||+|+.+++.+
T Consensus 17 ~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred HccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 79999999999999987432 24567899999999999999999875
No 118
>PRK06526 transposase; Provisional
Probab=97.35 E-value=0.00054 Score=60.98 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=23.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
..-+.++|++|+|||+||..+.......
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 3468999999999999999999876543
No 119
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.34 E-value=0.00098 Score=57.50 Aligned_cols=43 Identities=23% Similarity=0.240 Sum_probs=33.7
Q ss_pred hcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 43 LGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 43 L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
|..+-..-.++.|+|.+|+|||+++.+++.........++|+.
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4333344579999999999999999999987765556778886
No 120
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.34 E-value=0.0016 Score=57.15 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=32.5
Q ss_pred HHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC------CCceEEEe
Q 036788 39 IESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSN------FEGSCCHQ 85 (352)
Q Consensus 39 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------f~~~~~~~ 85 (352)
|-+.|..+-..-.++.|+|.+|+|||+||.+++...... -..++|+.
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 334444333445799999999999999999998653221 25677776
No 121
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.34 E-value=0.0076 Score=59.88 Aligned_cols=46 Identities=22% Similarity=0.253 Sum_probs=39.5
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|.+...+.|.+.+..+. -...+.++|+.|+||||+|+.+++.+
T Consensus 17 ~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred hccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999987433 24567789999999999999999875
No 122
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.32 E-value=0.00068 Score=57.00 Aligned_cols=36 Identities=25% Similarity=0.152 Sum_probs=26.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
..-+.++|.+|+|||.||.++++.+...--.+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 356889999999999999999997654433445554
No 123
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.31 E-value=0.023 Score=55.82 Aligned_cols=46 Identities=26% Similarity=0.263 Sum_probs=39.3
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|-+...+.|...+..+. -..++.++|.+|+||||+|+.+++.+
T Consensus 15 eiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 15 ELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred HccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 79999999999999987432 34577899999999999999999875
No 124
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.31 E-value=0.0028 Score=55.09 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=35.2
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 38 EIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 38 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.|-..|..+=..-.++.|+|.+|+||||+|.+++......-..++|+.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 444555433344579999999999999999999988655544566775
No 125
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.30 E-value=0.0011 Score=62.86 Aligned_cols=50 Identities=20% Similarity=0.342 Sum_probs=39.2
Q ss_pred CcccchhhHHHHHHHhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLGA-----------GSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
++.|.+...+++.+.+.. +-...+-+.++|++|+|||+||+++++.....
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~ 206 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT 206 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 688999999888876531 11235778899999999999999999976543
No 126
>PRK09183 transposase/IS protein; Provisional
Probab=97.30 E-value=0.0013 Score=58.75 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=22.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
..+.|+|++|+|||+||..++.....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 46779999999999999999887543
No 127
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.30 E-value=0.0026 Score=55.53 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=33.9
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC------CceEEEe
Q 036788 38 EIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNF------EGSCCHQ 85 (352)
Q Consensus 38 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~ 85 (352)
.|-+.|..+-..-.++.|+|.+|+|||+||..++....... ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 34444543334457999999999999999999988654443 4557776
No 128
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.28 E-value=0.0012 Score=61.05 Aligned_cols=30 Identities=37% Similarity=0.610 Sum_probs=26.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
..+..++|||++|+|||.+|++++.+..-.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 447899999999999999999999997654
No 129
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00034 Score=68.97 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=42.7
Q ss_pred CcccchhhHHHHHHHhcC----CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 28 QLVEVESRVEEIESLLGA----GSKDVYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
+-+|.++..++|.+.|.- +.-.-++++++|+||+|||+|++.+++.+...|
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkf 378 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKF 378 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCE
Confidence 678999999999998861 222347999999999999999999999887665
No 130
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.0022 Score=60.52 Aligned_cols=47 Identities=28% Similarity=0.299 Sum_probs=40.1
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+...+.+.+.+..+ .-.+.+.++|++|+||||+|..+++.+.
T Consensus 18 ~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred hcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 7999999999999998733 2346888999999999999999998764
No 131
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.22 E-value=0.0011 Score=56.83 Aligned_cols=88 Identities=16% Similarity=0.039 Sum_probs=50.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCC-HHHHHHHhCCCc
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILD-IALSFRRLSSRK 129 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~-~~~l~~~l~~k~ 129 (352)
.++.|+|++|+||||++..+...+.......++...-. . . ..... ...++.+.. ....... .+.++..++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~-~--E-~~~~~-~~~~i~q~~-vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDP-I--E-FVHES-KRSLINQRE-VGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCC-c--c-ccccC-ccceeeecc-cCCCccCHHHHHHHHhcCCc
Confidence 47899999999999999998887765544444433100 0 0 00000 000110000 0001112 566777787778
Q ss_pred EEEEEeCCCChHHHH
Q 036788 130 FLIVLDDETCFKQIK 144 (352)
Q Consensus 130 ~LlVlDdv~~~~~~~ 144 (352)
=++++|++.+.+.+.
T Consensus 76 d~ii~gEird~e~~~ 90 (198)
T cd01131 76 DVILVGEMRDLETIR 90 (198)
T ss_pred CEEEEcCCCCHHHHH
Confidence 899999997665544
No 132
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.18 E-value=0.0024 Score=66.60 Aligned_cols=49 Identities=16% Similarity=0.325 Sum_probs=38.7
Q ss_pred CcccchhhHHHHHHHhcCC------CC-CeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAG------SK-DVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++|.+..++.+...+... .+ ...++.++|++|+|||++|+.+++.+..
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 7999999999988877521 11 1357889999999999999999987643
No 133
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.16 E-value=0.0016 Score=64.48 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=48.0
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCCHHHHHHHh--
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILDIALSFRRL-- 125 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l-- 125 (352)
+.-+++.++|++|+||||||.-++++.. |. +..+. +|.. .+...+-..|...+.... .+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG--Ys----VvEIN-ASDe-Rt~~~v~~kI~~avq~~s-----------~l~a 384 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG--YS----VVEIN-ASDE-RTAPMVKEKIENAVQNHS-----------VLDA 384 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC--ce----EEEec-cccc-ccHHHHHHHHHHHHhhcc-----------cccc
Confidence 4468999999999999999999998743 21 21222 3444 555666666654433222 22
Q ss_pred CCCcEEEEEeCCCC
Q 036788 126 SSRKFLIVLDDETC 139 (352)
Q Consensus 126 ~~k~~LlVlDdv~~ 139 (352)
.+++.-||+|.++-
T Consensus 385 dsrP~CLViDEIDG 398 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDG 398 (877)
T ss_pred CCCcceEEEecccC
Confidence 26888899999974
No 134
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.16 E-value=0.0014 Score=57.78 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=36.3
Q ss_pred Ccccchh-hHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 28 QLVEVES-RVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 28 ~~vGR~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.++|-.. .+..+.++.. ....+.+.|+|++|+|||+|++.+++.....-..+.|+.
T Consensus 24 f~~~~n~~a~~~l~~~~~--~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~ 80 (235)
T PRK08084 24 FYPGDNDSLLAALQNALR--QEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP 80 (235)
T ss_pred cccCccHHHHHHHHHHHh--CCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3446333 3344444443 223457899999999999999999998765433445554
No 135
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.16 E-value=0.0082 Score=60.67 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=39.2
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|.+..++.|...+..+ .-...+.++|++|+||||+|+.+++.+
T Consensus 19 dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred HhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 7999999999999998743 234677899999999999999999864
No 136
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0015 Score=57.21 Aligned_cols=91 Identities=19% Similarity=0.346 Sum_probs=54.5
Q ss_pred CcccchhhHHHHHHHhc-----------CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCC
Q 036788 28 QLVEVESRVEEIESLLG-----------AGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGG 96 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~ 96 (352)
++=|-.++++.+.+... .+-+.++=|.++|++|.|||-+|++++++- ..||+..++.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirvigs------- 245 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVIGS------- 245 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeehhH-------
Confidence 45566666666665433 223456778899999999999999999874 3466663221
Q ss_pred hHHHHHHHHHHHhcccccCCCHHHHHHHhCC-CcEEEEEeCCC
Q 036788 97 LGCLQQILLSKLLQEKNAILDIALSFRRLSS-RKFLIVLDDET 138 (352)
Q Consensus 97 ~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 138 (352)
++...-.++...+ ...+.+.-+. |-++|.+|.++
T Consensus 246 ------elvqkyvgegarm--vrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 246 ------ELVQKYVGEGARM--VRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred ------HHHHHHhhhhHHH--HHHHHHHhcccceEEEEeeccc
Confidence 1222211111111 3344444455 55888899875
No 137
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.15 E-value=0.00055 Score=66.70 Aligned_cols=50 Identities=20% Similarity=0.235 Sum_probs=41.5
Q ss_pred CcccchhhHHHHHHHhc----CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLG----AGSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
+++|.++.++++.+.|. .-....+++.++|++|+||||||+.+++-+...
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 58999999999999883 223456799999999999999999999965543
No 138
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.15 E-value=0.0021 Score=66.05 Aligned_cols=48 Identities=17% Similarity=0.335 Sum_probs=38.6
Q ss_pred CcccchhhHHHHHHHhcCC-----C-C-CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAG-----S-K-DVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~-----~-~-~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+..++.+.+.+... + + ...++.++|++|+|||+||+.+++.+.
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 7899999999988877621 1 1 234688999999999999999999773
No 139
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.15 E-value=0.0019 Score=58.16 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=28.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
+.++++++|++|+||||++..++......-..+.++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4689999999999999999999987765433344443
No 140
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.14 E-value=0.00065 Score=56.95 Aligned_cols=36 Identities=31% Similarity=0.574 Sum_probs=30.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
..+|.+.|++|+||||+|+.++..+...+...+++.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 458999999999999999999999887777766663
No 141
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.14 E-value=0.0004 Score=54.58 Aligned_cols=22 Identities=50% Similarity=0.856 Sum_probs=20.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 036788 53 LGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 53 v~I~G~gGiGKTtLa~~~~~~~ 74 (352)
|+|.|++|+||||+|+.+.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999984
No 142
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.13 E-value=0.0027 Score=57.19 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=29.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEE
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCC 83 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~ 83 (352)
.+..++.|.|.+|+|||||...+...+.......+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 457899999999999999999999998776544443
No 143
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.13 E-value=0.0022 Score=67.05 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=39.9
Q ss_pred CcccchhhHHHHHHHhcCCC------C-CeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLGAGS------K-DVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~------~-~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.++|.+..++.+.+.+.... . ...++.++|++|+|||++|+.+++.+...
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 79999999999988876311 1 13578899999999999999999976443
No 144
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.13 E-value=0.0011 Score=65.15 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=35.3
Q ss_pred CcccchhhHHHHHHHhc---C-------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLG---A-------GSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
+++|.+...+++.+++. . +....+-+.++|++|+|||+||+.++....
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 68888887766655443 1 122345688999999999999999998754
No 145
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.12 E-value=0.04 Score=55.40 Aligned_cols=47 Identities=26% Similarity=0.245 Sum_probs=39.7
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+...+.|..++..+. -...+.++|.+|+||||+|+.+++.+-
T Consensus 17 ~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred hccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhc
Confidence 79999999999999987433 235678999999999999999999753
No 146
>PRK14974 cell division protein FtsY; Provisional
Probab=97.11 E-value=0.013 Score=54.30 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
+..++.++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36799999999999999999999876654
No 147
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.0041 Score=58.81 Aligned_cols=25 Identities=28% Similarity=0.170 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
..+++++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999754
No 148
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.10 E-value=0.0026 Score=54.30 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=49.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc--c-CCC-HHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN--A-ILD-IALSFRRL 125 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~--~-~~~-~~~l~~~l 125 (352)
++++.++|+.|+||||.+.+++.+.+.+-..+..++ . .... .+..+-++...+.++.+-. . ..+ .+.+++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis-~--D~~R-~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l 76 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS-A--DTYR-IGAVEQLKTYAEILGVPFYVARTESDPAEIAREAL 76 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-E--STSS-THHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec-C--CCCC-ccHHHHHHHHHHHhccccchhhcchhhHHHHHHHH
Confidence 468999999999999999999997665533344444 1 1112 4455666777777776643 1 112 33333332
Q ss_pred ---CCC-cEEEEEeCC
Q 036788 126 ---SSR-KFLIVLDDE 137 (352)
Q Consensus 126 ---~~k-~~LlVlDdv 137 (352)
..+ .=++++|-.
T Consensus 77 ~~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 77 EKFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHHTTSSEEEEEE-
T ss_pred HHHhhcCCCEEEEecC
Confidence 222 347778876
No 149
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.10 E-value=0.0022 Score=61.82 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=44.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCCHHHHHHHhCCCcE
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILDIALSFRRLSSRKF 130 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~ 130 (352)
.-+.|+|.+|+|||+|++++++.+......++++. ...+...+...+... ....++...+ +.-
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~-----~~~~f~~~~~-~~d 204 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSG-----EMQRFRQFYR-NVD 204 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcc-----hHHHHHHHcc-cCC
Confidence 46789999999999999999998765433344443 233333444333221 1233444443 344
Q ss_pred EEEEeCCCC
Q 036788 131 LIVLDDETC 139 (352)
Q Consensus 131 LlVlDdv~~ 139 (352)
+|++||+..
T Consensus 205 vLiIDDiq~ 213 (445)
T PRK12422 205 ALFIEDIEV 213 (445)
T ss_pred EEEEcchhh
Confidence 788899853
No 150
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0034 Score=62.04 Aligned_cols=74 Identities=26% Similarity=0.255 Sum_probs=49.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCC-ceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCCHHHHHHHhCCC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFE-GSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILDIALSFRRLSSR 128 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k 128 (352)
.+-|.|.|..|+|||+||+++++.+...-. .+.++. .+. ... ..+..+++.+- ....+.+...
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~-Cs~-l~~-~~~e~iQk~l~-------------~vfse~~~~~ 494 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVS-CST-LDG-SSLEKIQKFLN-------------NVFSEALWYA 494 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEe-chh-ccc-hhHHHHHHHHH-------------HHHHHHHhhC
Confidence 467889999999999999999998764322 222332 221 122 44566665553 3345556678
Q ss_pred cEEEEEeCCCC
Q 036788 129 KFLIVLDDETC 139 (352)
Q Consensus 129 ~~LlVlDdv~~ 139 (352)
+-++||||++.
T Consensus 495 PSiIvLDdld~ 505 (952)
T KOG0735|consen 495 PSIIVLDDLDC 505 (952)
T ss_pred CcEEEEcchhh
Confidence 89999999963
No 151
>CHL00176 ftsH cell division protein; Validated
Probab=97.09 E-value=0.0012 Score=66.19 Aligned_cols=48 Identities=27% Similarity=0.338 Sum_probs=35.8
Q ss_pred CcccchhhHHHHHHHhc---CC-------CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLG---AG-------SKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
++.|.++..+++.+.+. .. ....+-+.++|++|+|||+||++++....
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~ 241 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE 241 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 68898887777666542 11 12245689999999999999999998753
No 152
>CHL00181 cbbX CbbX; Provisional
Probab=97.09 E-value=0.0036 Score=56.84 Aligned_cols=48 Identities=27% Similarity=0.340 Sum_probs=33.0
Q ss_pred CcccchhhHHHHHHHhc----------CC--C-CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLG----------AG--S-KDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~----------~~--~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+...++|.++.. .+ . .....+.++|.+|+|||++|+.+++...
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57887777765544321 01 1 1223478999999999999999998653
No 153
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0029 Score=63.93 Aligned_cols=109 Identities=14% Similarity=0.216 Sum_probs=69.4
Q ss_pred CcccchhhHHHHHHHhcCC-------CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHH
Q 036788 28 QLVEVESRVEEIESLLGAG-------SKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCL 100 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l 100 (352)
.++|.+..+..+.+.+... +....+....|+.|||||-||++++..+-+.=+..+- +++.+.
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR-----------~DMSEy 560 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIR-----------IDMSEY 560 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCcccee-----------echHHH
Confidence 7999999999998877521 2235678889999999999999999876432122222 222222
Q ss_pred HHH-HHHHHhcccc---cCCCHHHHHHHhCCCcE-EEEEeCCC--ChHHHHHhh
Q 036788 101 QQI-LLSKLLQEKN---AILDIALSFRRLSSRKF-LIVLDDET--CFKQIKSLI 147 (352)
Q Consensus 101 ~~~-ll~~l~~~~~---~~~~~~~l~~~l~~k~~-LlVlDdv~--~~~~~~~l~ 147 (352)
... -.+.+.+..+ ...+-..|-+..+.++| +|.||+|. ++..++-|+
T Consensus 561 ~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilL 614 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLL 614 (786)
T ss_pred HHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHH
Confidence 221 2333333333 22335567777778877 88889996 445555444
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.06 E-value=0.0018 Score=67.37 Aligned_cols=103 Identities=10% Similarity=0.136 Sum_probs=59.8
Q ss_pred CcccchhhHHHHHHHhcCC------CC-CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHH
Q 036788 28 QLVEVESRVEEIESLLGAG------SK-DVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCL 100 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l 100 (352)
.++|.+..++.+...+... .+ ....+.++|++|+|||+||+.+++.+-..-...+-+ +.++.... .....
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~-~~~~~- 586 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEK-HTVSK- 586 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-Echhcccc-ccHHH-
Confidence 7999999999998876521 11 234677899999999999999999764322222222 23222111 11111
Q ss_pred HHHHHHHHhcccc--cCCCHHHHHHHhCCCc-EEEEEeCCCC
Q 036788 101 QQILLSKLLQEKN--AILDIALSFRRLSSRK-FLIVLDDETC 139 (352)
Q Consensus 101 ~~~ll~~l~~~~~--~~~~~~~l~~~l~~k~-~LlVlDdv~~ 139 (352)
+ ++.+.. .......+.+.++.++ .+++||+++.
T Consensus 587 ---l---~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeiek 622 (821)
T CHL00095 587 ---L---IGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEK 622 (821)
T ss_pred ---h---cCCCCcccCcCccchHHHHHHhCCCeEEEECChhh
Confidence 1 122211 1112334555565555 5888999974
No 155
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.06 E-value=0.0025 Score=52.03 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=27.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
++.|+|.+|+||||++..++......-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999998765444555654
No 156
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.05 E-value=0.00061 Score=58.14 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=23.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
+|+|.|.+|+||||+|+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999987643
No 157
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.04 E-value=0.0019 Score=66.47 Aligned_cols=49 Identities=20% Similarity=0.364 Sum_probs=38.8
Q ss_pred CcccchhhHHHHHHHhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGA-----------GSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
++.|.+..++++.+++.. +-...+-+.++|++|+|||+||+.+++....
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~ 238 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA 238 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC
Confidence 588999999998887641 1123456889999999999999999998754
No 158
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.0046 Score=57.94 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
+.++|+++|.+|+||||++..++..+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 35799999999999999999999876544
No 159
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.03 E-value=0.0099 Score=57.01 Aligned_cols=71 Identities=31% Similarity=0.377 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCcccchhhH----HHHHHHhcCCC------CCeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 4 ELVKEVVNQNLKRLAEVSPCSNKNQLVEVESRV----EEIESLLGAGS------KDVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 4 ~~i~~i~~~v~~~~~~~~~~~~~~~~vGR~~~~----~~l~~~L~~~~------~~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
+.++++++.+.++...... +. .+-.++..+ ++|.+.+.... ..+.++.++|.+|+||||+|..++..
T Consensus 42 ~~~~~~~~~v~~~~~~~~~--~~-~~~~~~~~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 42 KLVKELSKSIKERALEEEP--PK-GLTPREHVIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred HHHHHHHHHHHHHHhcccc--cc-cCCcHHHHHHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5566777777655432211 11 222222223 34555454221 34679999999999999999999998
Q ss_pred hhCC
Q 036788 74 ISSN 77 (352)
Q Consensus 74 ~~~~ 77 (352)
+...
T Consensus 119 L~~~ 122 (437)
T PRK00771 119 FKKK 122 (437)
T ss_pred HHHc
Confidence 7654
No 160
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.03 E-value=0.0024 Score=58.96 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=28.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.-+.++|.+|+|||.||.++++.+...-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 57899999999999999999998765544555554
No 161
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.02 E-value=0.0025 Score=66.39 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=39.4
Q ss_pred CcccchhhHHHHHHHhcC-------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGA-------GSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++|.+..++.+.+.+.. .+....++.++|++|+|||.||+.+++.+-.
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 799999999999887742 1122457899999999999999999988643
No 162
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.01 E-value=0.0012 Score=53.89 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=28.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+|-|+|.+|+||||||+++.+++...-....++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 58899999999999999999999877655555553
No 163
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.00 E-value=0.0097 Score=54.64 Aligned_cols=67 Identities=10% Similarity=0.159 Sum_probs=40.6
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh------CCCCceEEEeeccccccCCCChHHHHHHHHHHHh
Q 036788 37 EEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS------SNFEGSCCHQNVREESRRPGGLGCLQQILLSKLL 109 (352)
Q Consensus 37 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~------~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~ 109 (352)
..|-++|..+=..-.++-|+|.+|+|||+|+.+++-... ..-..++|++ .... ++...+. +++..++
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId----tE~~-f~~eRi~-~~a~~~g 155 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID----TEGT-FRPDRIR-AIAERFG 155 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE----cCCC-CCHHHHH-HHHHHcC
Confidence 445555654334457889999999999999998775321 1123567776 2222 4555544 3444443
No 164
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.00 E-value=0.023 Score=49.75 Aligned_cols=86 Identities=13% Similarity=0.178 Sum_probs=53.2
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc-cCCC-H----HH
Q 036788 47 SKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN-AILD-I----AL 120 (352)
Q Consensus 47 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-~~~~-~----~~ 120 (352)
+++.+++.++|.-|+|||.++++.....-+.=-.++.+. ... .+...+...++..+..+.. .+.. . ..
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~-~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~ 121 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPT-LSDATLLEAIVADLESQPKVNVNAVLEQIDRE 121 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----Ccc-hhHHHHHHHHHHHhccCccchhHHHHHHHHHH
Confidence 455679999999999999999955554332211222222 223 6667788888887777333 3332 2 22
Q ss_pred HHHH-hCCCc-EEEEEeCCC
Q 036788 121 SFRR-LSSRK-FLIVLDDET 138 (352)
Q Consensus 121 l~~~-l~~k~-~LlVlDdv~ 138 (352)
+... -++++ +.++.|+..
T Consensus 122 L~al~~~g~r~v~l~vdEah 141 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAH 141 (269)
T ss_pred HHHHHHhCCCCeEEeehhHh
Confidence 2222 25666 999999985
No 165
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.00 E-value=0.0031 Score=57.23 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=33.3
Q ss_pred CcccchhhHHHHHHHhc---C-------C--C-CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLG---A-------G--S-KDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~---~-------~--~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.++..+++.++.. . + . ....-+.++|.+|+|||++|+.+++.+.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILH 83 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 57888877777655322 0 0 0 1122578999999999999999888654
No 166
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.99 E-value=0.0018 Score=62.15 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=38.5
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++||++.++.+...+..+. -|.|.|++|+|||++|+.++.....
T Consensus 21 ~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhcc
Confidence 79999999999988776332 5789999999999999999997543
No 167
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.96 E-value=0.0063 Score=56.10 Aligned_cols=49 Identities=27% Similarity=0.263 Sum_probs=39.0
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++|-+....++..+..........+.++|++|+||||+|.++++.+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence 4677788888888887643334456999999999999999999998653
No 168
>PTZ00301 uridine kinase; Provisional
Probab=96.96 E-value=0.0011 Score=57.19 Aligned_cols=29 Identities=24% Similarity=0.509 Sum_probs=24.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
..+|+|.|.+|+||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 36899999999999999999998875443
No 169
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00086 Score=66.13 Aligned_cols=51 Identities=29% Similarity=0.392 Sum_probs=43.4
Q ss_pred CcccchhhHHHHHHHhc----CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 28 QLVEVESRVEEIESLLG----AGSKDVYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
+-+|.++..+++.+++. .++.+-++++.+|+||||||++|+.++..+...|
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 67899999999999886 3445568999999999999999999999876554
No 170
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.96 E-value=0.0017 Score=65.18 Aligned_cols=45 Identities=22% Similarity=0.351 Sum_probs=38.2
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|++..+..+.+.+.. .....+.|+|++|+||||||+.+++..
T Consensus 155 ~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 155 EIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred hceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 799999999998887752 334579999999999999999998865
No 171
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.93 E-value=0.00053 Score=53.62 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=20.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhCCCCc
Q 036788 53 LGIWGIGGIGKTTIARAIFDKISSNFEG 80 (352)
Q Consensus 53 v~I~G~gGiGKTtLa~~~~~~~~~~f~~ 80 (352)
|.|+|.+|+|||++|+.++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999998877754
No 172
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.93 E-value=0.005 Score=57.86 Aligned_cols=95 Identities=16% Similarity=0.173 Sum_probs=55.6
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccccC-
Q 036788 37 EEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAI- 115 (352)
Q Consensus 37 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~- 115 (352)
.++-+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|+. . . .+..++... ...++....++
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs-~-----E-Es~~qi~~R-a~rlg~~~~~l~ 140 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS-G-----E-ESPEQIKLR-ADRLGISTENLY 140 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE-C-----C-cCHHHHHHH-HHHcCCCcccEE
Confidence 4455555433333569999999999999999999987765544566665 1 1 223333222 23333322211
Q ss_pred ----CCHHHHHHHhC-CCcEEEEEeCCCC
Q 036788 116 ----LDIALSFRRLS-SRKFLIVLDDETC 139 (352)
Q Consensus 116 ----~~~~~l~~~l~-~k~~LlVlDdv~~ 139 (352)
.+.+.+.+.+. .+.-++|+|.+..
T Consensus 141 l~~e~~le~I~~~i~~~~~~lVVIDSIq~ 169 (372)
T cd01121 141 LLAETNLEDILASIEELKPDLVIIDSIQT 169 (372)
T ss_pred EEccCcHHHHHHHHHhcCCcEEEEcchHH
Confidence 11444555443 3667899999853
No 173
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.076 Score=53.42 Aligned_cols=46 Identities=26% Similarity=0.302 Sum_probs=39.2
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|.+...+.|.+.+..+. -...+.++|..|+||||+|+.++..+
T Consensus 18 ~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999987332 24568899999999999999999875
No 174
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.93 E-value=0.0078 Score=55.53 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC------CceEEEe
Q 036788 37 EEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNF------EGSCCHQ 85 (352)
Q Consensus 37 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~ 85 (352)
..+.+.|..+=..-.++-|+|.+|+|||+++.+++....... ..++|++
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 344555543334467899999999999999999987643211 3567776
No 175
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.93 E-value=0.02 Score=56.74 Aligned_cols=111 Identities=15% Similarity=0.163 Sum_probs=75.2
Q ss_pred CCCCCcccchhhHHHHHHHhcC---CCCCeEEEEEEcCCCchHHHHHHHHHHHhh-----CCCCceEEEeeccccccCCC
Q 036788 24 SNKNQLVEVESRVEEIESLLGA---GSKDVYALGIWGIGGIGKTTIARAIFDKIS-----SNFEGSCCHQNVREESRRPG 95 (352)
Q Consensus 24 ~~~~~~vGR~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~-----~~f~~~~~~~~~~~~s~~~~ 95 (352)
+|+ .+-+|+.+..+|..++.. ..+.-+.+=|.|.+|+|||+.+..|.+.++ ..-+...|+. +.. -.- .
T Consensus 394 vp~-sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yve-INg-m~l-~ 469 (767)
T KOG1514|consen 394 VPE-SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVE-ING-LRL-A 469 (767)
T ss_pred ccc-cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEE-Ecc-eee-c
Confidence 566 788999999999998862 223345888999999999999999999543 2334334443 211 111 5
Q ss_pred ChHHHHHHHHHHHhcccccC-CCHHHHHHHhC-----CCcEEEEEeCCC
Q 036788 96 GLGCLQQILLSKLLQEKNAI-LDIALSFRRLS-----SRKFLIVLDDET 138 (352)
Q Consensus 96 ~~~~l~~~ll~~l~~~~~~~-~~~~~l~~~l~-----~k~~LlVlDdv~ 138 (352)
...++...|...+.+..... ...+.+..++. .+.+++++|+++
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD 518 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELD 518 (767)
T ss_pred CHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHH
Confidence 67788888887776665421 12555655553 357899999985
No 176
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.92 E-value=0.0063 Score=60.30 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=44.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCc--eEEEeeccccccCCCChHHHHHHHHHHHhcccccCCCHHHHHHHhCCC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEG--SCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILDIALSFRRLSSR 128 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k 128 (352)
..+.|+|..|+|||.|+.++++.+...+.. ++|+. ...+...+...+... ....+++.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~~-----~~~~f~~~y~~- 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRDG-----KGDSFRRRYRE- 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHhc-----cHHHHHHHhhc-
Confidence 458999999999999999999987654432 23433 334444444333211 02334444443
Q ss_pred cEEEEEeCCCC
Q 036788 129 KFLIVLDDETC 139 (352)
Q Consensus 129 ~~LlVlDdv~~ 139 (352)
.=+|||||+..
T Consensus 378 ~DLLlIDDIq~ 388 (617)
T PRK14086 378 MDILLVDDIQF 388 (617)
T ss_pred CCEEEEehhcc
Confidence 34788899963
No 177
>PRK08233 hypothetical protein; Provisional
Probab=96.92 E-value=0.00081 Score=56.49 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..+|+|.|.+|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998764
No 178
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.91 E-value=0.00088 Score=53.87 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987654
No 179
>PRK06762 hypothetical protein; Provisional
Probab=96.91 E-value=0.00093 Score=55.38 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
..+|.|+|++|+||||+|+.+++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999886
No 180
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.90 E-value=0.02 Score=51.87 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=24.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
..++++++|++|+||||++..++.....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999987643
No 181
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.0024 Score=53.83 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
+.|.++|.||+||||+|+++++.++++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 467899999999999999999977654
No 182
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.90 E-value=0.0053 Score=56.36 Aligned_cols=50 Identities=20% Similarity=0.172 Sum_probs=36.5
Q ss_pred HHHHHHHhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 36 VEEIESLLG-AGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 36 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
...|-..|. .+=+.-+++-|+|++|+||||||.+++......-...+|++
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 40 SLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 344555554 33344678999999999999999999887665555667775
No 183
>PRK03839 putative kinase; Provisional
Probab=96.89 E-value=0.00088 Score=56.38 Aligned_cols=24 Identities=33% Similarity=0.656 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.|.|.|++|+||||+|+.++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999864
No 184
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.89 E-value=0.0031 Score=56.59 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
+.|.|+|.||+||||+|+++...+.+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999997665
No 185
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.87 E-value=0.0092 Score=53.13 Aligned_cols=74 Identities=22% Similarity=0.137 Sum_probs=45.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCCHHHHHHHhCCC
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILDIALSFRRLSSR 128 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k 128 (352)
...-+.++|.+|+|||.||.++.+++...--.+.|+. ..++...+......... ...+.+.+. +
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~-----------~~el~~~Lk~~~~~~~~----~~~l~~~l~-~ 167 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT-----------APDLLSKLKAAFDEGRL----EEKLLRELK-K 167 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhcCch----HHHHHHHhh-c
Confidence 4457889999999999999999999874323444444 34445555443332110 222333222 2
Q ss_pred cEEEEEeCCC
Q 036788 129 KFLIVLDDET 138 (352)
Q Consensus 129 ~~LlVlDdv~ 138 (352)
-=||||||+.
T Consensus 168 ~dlLIiDDlG 177 (254)
T COG1484 168 VDLLIIDDIG 177 (254)
T ss_pred CCEEEEeccc
Confidence 3388999984
No 186
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.86 E-value=0.0012 Score=57.09 Aligned_cols=27 Identities=41% Similarity=0.667 Sum_probs=24.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+..+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999999999876
No 187
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.86 E-value=0.00099 Score=46.54 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+++|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 188
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.84 E-value=0.0051 Score=51.30 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=23.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
++.+.|++|+||||++..++......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999887655
No 189
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.84 E-value=0.0015 Score=62.46 Aligned_cols=51 Identities=27% Similarity=0.467 Sum_probs=40.1
Q ss_pred CcccchhhHHHHHHHhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 28 QLVEVESRVEEIESLLGA-----------GSKDVYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
++.|.+.+++++.+.+.. +-...+-+.++|++|+|||++|+.+++.....|
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f 245 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF 245 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 678999999998887641 112345688999999999999999999876544
No 190
>PRK04040 adenylate kinase; Provisional
Probab=96.83 E-value=0.0013 Score=55.81 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=23.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+|+|+|++|+||||+++.+.+.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999874
No 191
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.82 E-value=0.0022 Score=56.28 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=26.7
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 47 SKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 47 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.....+++|.|.+|+|||||++.+...++..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3557899999999999999999999877654
No 192
>PRK06547 hypothetical protein; Provisional
Probab=96.82 E-value=0.0021 Score=53.66 Aligned_cols=28 Identities=32% Similarity=0.361 Sum_probs=24.6
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 47 SKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 47 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.....+|+|.|.+|+||||+|..+++..
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3557899999999999999999999874
No 193
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.0018 Score=64.63 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=44.3
Q ss_pred HHHhhcCCCCCCCCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 13 NLKRLAEVSPCSNKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 13 v~~~~~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
..++.+|... + .++|.+..++.|.+.+..+ .-...+.++|++|+||||+|+.+++.+
T Consensus 6 l~~kyRP~~f---~-eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 6 IARKYRPSKF---A-DITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred HHHHHCCCCH---H-HhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 3455555433 5 7999999999999988733 223568899999999999999999975
No 194
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.81 E-value=0.007 Score=56.68 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=47.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCC--ceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCC---HHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFE--GSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILD---IALSFRR 124 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~---~~~l~~~ 124 (352)
-.+++++|+.|+||||++.+++.+....+. .+.++. .. ... .+..+-+....+.++.+.....+ .......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit-~D--~~R-~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~ 212 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT-TD--SYR-IGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE 212 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe-cc--ccc-ccHHHHHHHHHHHcCCceEecCCcccHHHHHHH
Confidence 469999999999999999999997654432 344443 11 111 22334444445555444332222 3333334
Q ss_pred hCCCcEEEEEeCCC
Q 036788 125 LSSRKFLIVLDDET 138 (352)
Q Consensus 125 l~~k~~LlVlDdv~ 138 (352)
+.++ -++++|...
T Consensus 213 l~~~-DlVLIDTaG 225 (374)
T PRK14722 213 LRNK-HMVLIDTIG 225 (374)
T ss_pred hcCC-CEEEEcCCC
Confidence 4555 455589884
No 195
>PRK00625 shikimate kinase; Provisional
Probab=96.80 E-value=0.0011 Score=55.31 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.|.|+||+|+||||+++.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998864
No 196
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.80 E-value=0.0052 Score=55.01 Aligned_cols=44 Identities=25% Similarity=0.169 Sum_probs=36.3
Q ss_pred HhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 42 LLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 42 ~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.|..+=+.-+++.|+|.+|+|||+++.++..+...+...++|+.
T Consensus 15 ~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 15 ILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 33333355689999999999999999999998877788888887
No 197
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.79 E-value=0.0041 Score=63.70 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=38.9
Q ss_pred CcccchhhHHHHHHHhcCC-------CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAG-------SKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+..++.+.+.+... ......+.++|++|+|||++|+.++..+.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999988877621 11245788999999999999999998874
No 198
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.028 Score=52.57 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=28.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
+.++++++|+.|+||||++..++.....+-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4679999999999999999999987644433344454
No 199
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.78 E-value=0.0029 Score=62.52 Aligned_cols=45 Identities=22% Similarity=0.437 Sum_probs=37.0
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+++|.+..++.+...+... ...-+.|+|.+|+|||++|+.+++..
T Consensus 66 ~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 6999999999998876532 23456799999999999999998754
No 200
>PRK09354 recA recombinase A; Provisional
Probab=96.76 E-value=0.0082 Score=55.60 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=37.4
Q ss_pred HHHHHHHhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 36 VEEIESLLG-AGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 36 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
...|-..|. .+=+.-+++-|+|++|+||||||.+++......-...+|+.
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 345555565 33345679999999999999999999887665556677776
No 201
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.76 E-value=0.0013 Score=54.64 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
...|.|+|++|+||||+|+.+++.+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999999874
No 202
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.75 E-value=0.0059 Score=58.55 Aligned_cols=88 Identities=17% Similarity=0.262 Sum_probs=53.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc----cCCC--------
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN----AILD-------- 117 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~~~~-------- 117 (352)
-+.++|.|.+|+|||||+..++.......+.++-+.-+++-. ..+.++.+.+...-..... ...+
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~---rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT---REGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc---HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 357899999999999999999887654434333333343322 4456666666543221111 0011
Q ss_pred ----HHHHHHHh---CCCcEEEEEeCCCCh
Q 036788 118 ----IALSFRRL---SSRKFLIVLDDETCF 140 (352)
Q Consensus 118 ----~~~l~~~l---~~k~~LlVlDdv~~~ 140 (352)
.-.+.+++ +++.+||++|++...
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 22344444 679999999999644
No 203
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.0021 Score=55.10 Aligned_cols=30 Identities=33% Similarity=0.567 Sum_probs=26.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
..+.+|+|.|.+|+||||+|+.++..++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 446799999999999999999999998765
No 204
>PRK06620 hypothetical protein; Validated
Probab=96.73 E-value=0.0029 Score=54.81 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=33.7
Q ss_pred CCCCCCCCCCcccc-hhh-HHHHHHHhcCCCCCe--EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 19 EVSPCSNKNQLVEV-ESR-VEEIESLLGAGSKDV--YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 19 ~~~~~~~~~~~vGR-~~~-~~~l~~~L~~~~~~~--~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
..+.+..++.++|- ... ...+.++-.....+. +.+.|||++|+|||+|++.+++..
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc
Confidence 33444445356676 332 333444432111112 678999999999999999987754
No 205
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.72 E-value=0.0042 Score=53.72 Aligned_cols=80 Identities=18% Similarity=0.247 Sum_probs=48.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc-----cCCC--------
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN-----AILD-------- 117 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~-------- 117 (352)
+.++|.|.+|+|||+|+..+++..... ..+++. + .+.+..+.++.+++...-..+.. ...+
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~d--~~V~~~-i---Ger~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDAD--VVVYAL-I---GERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTTT--EEEEEE-E---SECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccccc--ceeeee-c---cccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 478899999999999999999987532 334544 2 22213345555555332111110 1111
Q ss_pred -------HHHHHHHhCCCcEEEEEeCCC
Q 036788 118 -------IALSFRRLSSRKFLIVLDDET 138 (352)
Q Consensus 118 -------~~~l~~~l~~k~~LlVlDdv~ 138 (352)
++.++. +++.+|+++||+.
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Dslt 115 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEETHH
T ss_pred hccchhhhHHHhh--cCCceeehhhhhH
Confidence 233333 7899999999974
No 206
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.72 E-value=0.00099 Score=50.98 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=21.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 53 LGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 53 v~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
|-|+|.+|+|||+||..++..+.++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999876544
No 207
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.71 E-value=0.0037 Score=64.42 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=37.0
Q ss_pred CcccchhhHHHHHHHhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLGA-----------GSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.+.|.+...+.|.+.+.. +-...+-+.++|++|+|||++|+++++.....
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~ 514 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN 514 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 577888887777775531 11224568899999999999999999986543
No 208
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.71 E-value=0.025 Score=53.89 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=24.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
+.+|.++|.+|+||||++..++..++..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6799999999999999999999876554
No 209
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.003 Score=61.34 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=25.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
+.=|.+||+||+|||-||++++++.+-+|
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF 573 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF 573 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce
Confidence 45678999999999999999999877664
No 210
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.70 E-value=0.0091 Score=51.65 Aligned_cols=53 Identities=21% Similarity=0.360 Sum_probs=40.3
Q ss_pred CcccchhhHHHHHHHhc--CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCc
Q 036788 28 QLVEVESRVEEIESLLG--AGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEG 80 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~ 80 (352)
.++|.+...+.+.+-.. ...-...-|.+||..|.|||+|++++.+.+...+..
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 68999988888766432 112223467899999999999999999998877655
No 211
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.69 E-value=0.015 Score=54.01 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=40.1
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh--CC----CCceEEEeeccccccCCCChHHHHHHHHHHHh
Q 036788 37 EEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS--SN----FEGSCCHQNVREESRRPGGLGCLQQILLSKLL 109 (352)
Q Consensus 37 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~--~~----f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~ 109 (352)
..|-++|..+=..-.++-|+|.+|+|||+|+.+++-..+ .. -..++|++ .... +....+.+ +...++
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId----TE~t-F~peRl~~-ia~~~g 185 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID----TEGT-FRPDRIVP-IAERFG 185 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE----cCCC-CCHHHHHH-HHHHcC
Confidence 344445543334457888999999999999998875322 11 13567776 2222 55555443 444443
No 212
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.69 E-value=0.0017 Score=54.80 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+.++|+|.|++|+||||+|+.+++..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999875
No 213
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.68 E-value=0.0081 Score=58.10 Aligned_cols=96 Identities=17% Similarity=0.121 Sum_probs=55.6
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc--
Q 036788 36 VEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN-- 113 (352)
Q Consensus 36 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-- 113 (352)
+..+-+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|+. . . .+..++... ...++....
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs-~-----E-Es~~qi~~r-a~rlg~~~~~l 151 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS-G-----E-ESLQQIKMR-AIRLGLPEPNL 151 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-C-----c-CCHHHHHHH-HHHcCCChHHe
Confidence 45555555533344579999999999999999999887654434566765 1 1 223333322 122222211
Q ss_pred cC---CCHHHHHHHhCC-CcEEEEEeCCCC
Q 036788 114 AI---LDIALSFRRLSS-RKFLIVLDDETC 139 (352)
Q Consensus 114 ~~---~~~~~l~~~l~~-k~~LlVlDdv~~ 139 (352)
.+ .+.+.+...+.. +.-++|+|.+..
T Consensus 152 ~~~~e~~~~~I~~~i~~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 152 YVLSETNWEQICANIEEENPQACVIDSIQT 181 (454)
T ss_pred EEcCCCCHHHHHHHHHhcCCcEEEEecchh
Confidence 11 114455554433 566899999854
No 214
>PRK06217 hypothetical protein; Validated
Probab=96.67 E-value=0.011 Score=49.98 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.|.|.|.+|+||||+|+++.+.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999764
No 215
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.67 E-value=0.029 Score=53.83 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=26.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh--CCCCceEEEe
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS--SNFEGSCCHQ 85 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~--~~f~~~~~~~ 85 (352)
.++++++|++|+||||++..++.... ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 35899999999999999999988764 3333444444
No 216
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.66 E-value=0.0078 Score=57.87 Aligned_cols=87 Identities=21% Similarity=0.199 Sum_probs=52.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCC-CceEEEeeccccccCCCChHHHHHHHHHHHhcccc----cCCC-------
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNF-EGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN----AILD------- 117 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~~~~------- 117 (352)
-+.++|.|.+|+|||||+..+++....+. +..++. .+++-. ....++...+...-..... ...+
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~-liGER~---rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA-GVGERS---REGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE-cCCcch---HHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 35789999999999999999998765433 444444 343322 3355666666543211111 1111
Q ss_pred -----HHHHHHHh---CCCcEEEEEeCCCCh
Q 036788 118 -----IALSFRRL---SSRKFLIVLDDETCF 140 (352)
Q Consensus 118 -----~~~l~~~l---~~k~~LlVlDdv~~~ 140 (352)
+-.+.+++ .++.+|+++|++...
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 23344444 479999999999644
No 217
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.66 E-value=0.0071 Score=53.94 Aligned_cols=64 Identities=19% Similarity=0.206 Sum_probs=37.8
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh--CC---CC-ceEEEeeccccccCCCChHHHHHHHHHH
Q 036788 38 EIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS--SN---FE-GSCCHQNVREESRRPGGLGCLQQILLSK 107 (352)
Q Consensus 38 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~--~~---f~-~~~~~~~~~~~s~~~~~~~~l~~~ll~~ 107 (352)
.|-+.|..+-..-.++=|+|.+|+|||+|+.+++-.+. .. .+ .++|++ . ... ++...+. +|+..
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid-T---e~~-f~~~Rl~-~i~~~ 95 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID-T---EGT-FSPERLQ-QIAER 95 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE-S---SSS-S-HHHHH-HHHHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe-C---CCC-CCHHHHH-HHhhc
Confidence 44555542223346889999999999999998876532 11 22 356775 2 222 5555544 45544
No 218
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.66 E-value=0.015 Score=53.56 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC------CCceEEEe
Q 036788 37 EEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSN------FEGSCCHQ 85 (352)
Q Consensus 37 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------f~~~~~~~ 85 (352)
..+...|..+=..-.++-|+|.+|+|||+|+.+++...... -..++|++
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 34445554333446788999999999999999998765321 12567776
No 219
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.65 E-value=0.006 Score=53.86 Aligned_cols=88 Identities=23% Similarity=0.152 Sum_probs=55.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeec--cccccCCCChHHHHHHHHHHHhcccc---cCCC-------
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNV--REESRRPGGLGCLQQILLSKLLQEKN---AILD------- 117 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~s~~~~~~~~l~~~ll~~l~~~~~---~~~~------- 117 (352)
-.+++|+|.+|+||||+++.+..-..... +.+++..- ...+ . ....+...+++..++.... ..+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i~~~~-~-~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDITKLS-K-EERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcchhhcc-h-hHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 35899999999999999999997655433 33333311 1011 1 2234455666666664433 2222
Q ss_pred -HHHHHHHhCCCcEEEEEeCCCCh
Q 036788 118 -IALSFRRLSSRKFLIVLDDETCF 140 (352)
Q Consensus 118 -~~~l~~~l~~k~~LlVlDdv~~~ 140 (352)
.-.+.+.+.-++-++|.|+--+.
T Consensus 116 QRi~IARALal~P~liV~DEpvSa 139 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSA 139 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhh
Confidence 34567788889999999987543
No 220
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.65 E-value=0.003 Score=50.15 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=28.3
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 35 RVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 35 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+..++.+.|...-..-.++.+.|.-|+||||+++.+++.+
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444444443211233589999999999999999999965
No 221
>PRK13947 shikimate kinase; Provisional
Probab=96.65 E-value=0.0016 Score=54.19 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
-|.|.|++|+||||+|+.+++++.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999987543
No 222
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.64 E-value=0.0023 Score=55.14 Aligned_cols=27 Identities=41% Similarity=0.661 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
...+|+|.|++|+|||||++.++..+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999998654
No 223
>PRK05439 pantothenate kinase; Provisional
Probab=96.63 E-value=0.006 Score=55.69 Aligned_cols=29 Identities=34% Similarity=0.454 Sum_probs=25.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
..+-+|+|.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999886653
No 224
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.63 E-value=0.014 Score=55.88 Aligned_cols=89 Identities=17% Similarity=0.258 Sum_probs=53.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc----cCCC--------
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN----AILD-------- 117 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~~~~-------- 117 (352)
-+.++|.|.+|+|||||+..++.........++.+.-+++-. ..+.++.+.+...-..... ...+
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~---rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT---REGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCc---hHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 357899999999999999999887654434443333343322 3456666666432111110 0111
Q ss_pred ----HHHHHHHh---CCCcEEEEEeCCCChH
Q 036788 118 ----IALSFRRL---SSRKFLIVLDDETCFK 141 (352)
Q Consensus 118 ----~~~l~~~l---~~k~~LlVlDdv~~~~ 141 (352)
+-.+.+++ +++.+||++||+....
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~A 250 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRFT 250 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHHH
Confidence 23344444 5689999999996543
No 225
>PRK10867 signal recognition particle protein; Provisional
Probab=96.63 E-value=0.026 Score=54.05 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.+.++.++|.+|+||||++..++..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36799999999999999999999876655
No 226
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.62 E-value=0.0027 Score=53.46 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
+|+|.|.+|+||||||..+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999997653
No 227
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.61 E-value=0.055 Score=52.69 Aligned_cols=57 Identities=26% Similarity=0.290 Sum_probs=43.6
Q ss_pred HHHhhcCCCCCCCCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 13 NLKRLAEVSPCSNKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 13 v~~~~~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
..++.+|... + ++||.+.....|...+..+. -..-....|+-|+||||+|+-++..+
T Consensus 6 L~rKyRP~~F---~-evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~Akal 62 (515)
T COG2812 6 LARKYRPKTF---D-DVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKAL 62 (515)
T ss_pred HHHHhCcccH---H-HhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHh
Confidence 3455554433 4 78999999999999987432 23566789999999999999999864
No 228
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=96.61 E-value=0.0057 Score=56.12 Aligned_cols=105 Identities=22% Similarity=0.351 Sum_probs=62.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc-----cCCC--------
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN-----AILD-------- 117 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~-------- 117 (352)
.-+++.|-+|+|||.|.+++.+.+.....+...+..+++-++. -.++..++...-..+.. ++.+
T Consensus 148 gKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtRE---GndLy~Em~es~vl~ktalv~gQMNEpPGaR~RV 224 (468)
T COG0055 148 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTRE---GNDLYHEMKESGVLDKTALVFGQMNEPPGARMRV 224 (468)
T ss_pred ceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEeccccccc---hHHHHHHHHhcCCCCceeEEEeecCCCCcceeee
Confidence 4689999999999999999999876665555444456544332 34555555433111110 1111
Q ss_pred ------HHHHHHHhCCCcEEEEEeCCCChHHHHHhhccCCchhHHHHHHHHhcCCchhH
Q 036788 118 ------IALSFRRLSSRKFLIVLDDETCFKQIKSLIGSHGFEELSSRVIKYAQGVPLAI 170 (352)
Q Consensus 118 ------~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~i~~~~~glPLal 170 (352)
.....+--.++.+|+.+||+.. +.+.+.++...+|-.|-|.
T Consensus 225 altGlT~AEyfRD~~gqdVLlFIDNIfR------------ftQAGsEVSalLGr~PSav 271 (468)
T COG0055 225 ALTGLTMAEYFRDEEGQDVLLFIDNIFR------------FTQAGSEVSALLGRMPSAV 271 (468)
T ss_pred hhhhhhHHHHhhcccCCeEEEEehhhhH------------HhhcchHHHHHhccCcccc
Confidence 2222333347899999999963 3334444555555555443
No 229
>PRK04296 thymidine kinase; Provisional
Probab=96.61 E-value=0.0026 Score=54.09 Aligned_cols=34 Identities=15% Similarity=-0.119 Sum_probs=26.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
.++.|+|.+|.||||+|..++.+...+...++++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 4778999999999999999999876554443333
No 230
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0028 Score=64.11 Aligned_cols=46 Identities=20% Similarity=0.343 Sum_probs=37.5
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++||++|++++.+.|.....+-+ .++|.+|+|||+++.-++.++.
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv 216 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIV 216 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHh
Confidence 699999999999999974332222 3789999999999999999853
No 231
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.61 E-value=0.0016 Score=52.15 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 036788 53 LGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 53 v~I~G~gGiGKTtLa~~~~~~~ 74 (352)
|.|+|.+|+|||+||+.+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999988
No 232
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.60 E-value=0.0021 Score=53.83 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
++|.+.|++|+||||+|+.+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4899999999999999999998754
No 233
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.59 E-value=0.01 Score=53.03 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=51.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh----CCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc----cC-CC---
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS----SNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN----AI-LD--- 117 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~----~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~~-~~--- 117 (352)
-+.++|.|-+|+|||+|+..++++.. .+-+.+++.. +++-. ....++.+++...-..... .. .+
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~-IGeR~---rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~ 144 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA-MGITM---EDARFFKDDFEETGALERVVLFLNLANDPTI 144 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE-ecccc---HHHHHHHHHhhhcCCcceEEEEEecCCCCHH
Confidence 35789999999999999999988753 1223444443 43322 3456666666543211111 00 11
Q ss_pred --------HHHHHHHh---CCCcEEEEEeCCCCh
Q 036788 118 --------IALSFRRL---SSRKFLIVLDDETCF 140 (352)
Q Consensus 118 --------~~~l~~~l---~~k~~LlVlDdv~~~ 140 (352)
.-.+.+++ .++++|+++||+...
T Consensus 145 ~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 145 ERIITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 22344444 378999999998543
No 234
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.59 E-value=0.0016 Score=54.84 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+|.|.|++|+||||+|+.++++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999875
No 235
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.58 E-value=0.026 Score=53.24 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..+++.++|..|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998754
No 236
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.58 E-value=0.0084 Score=55.95 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=53.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc---cCCC-HHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN---AILD-IALSFRRL 125 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~---~~~~-~~~l~~~l 125 (352)
...+.|.|+.|+||||+...+...+.......++.. ... .+-..... ..+..... ...+ .+.++..+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti-----Edp---~E~~~~~~-~~~i~q~evg~~~~~~~~~l~~~l 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI-----EDP---IEYVHRNK-RSLINQREVGLDTLSFANALRAAL 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE-----cCC---hhhhccCc-cceEEccccCCCCcCHHHHHHHhh
Confidence 368999999999999999999988765555555543 110 11100000 00000001 1112 66788888
Q ss_pred CCCcEEEEEeCCCChHHHHH
Q 036788 126 SSRKFLIVLDDETCFKQIKS 145 (352)
Q Consensus 126 ~~k~~LlVlDdv~~~~~~~~ 145 (352)
+..+=+|++|++.+.+....
T Consensus 193 r~~pd~i~vgEird~~~~~~ 212 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVEL 212 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHH
Confidence 89999999999987665443
No 237
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.56 E-value=0.0038 Score=54.85 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=31.3
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 35 RVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 35 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
+..++.+.+.....+..+|+|+|.||+|||||.-++...+...
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 3445555555444567899999999999999999999976654
No 238
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.54 E-value=0.004 Score=52.07 Aligned_cols=27 Identities=41% Similarity=0.551 Sum_probs=24.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
..+++|.|.+|+||||+|+.++.....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 358999999999999999999998754
No 239
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.021 Score=53.24 Aligned_cols=94 Identities=20% Similarity=0.243 Sum_probs=58.5
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhccccc-
Q 036788 36 VEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNA- 114 (352)
Q Consensus 36 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~- 114 (352)
..++...|-.+--.-.++.|-|-||||||||..+++.++..+- .+.|+. .. .+..++.-. ...++.....
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs------GE-ES~~QiklR-A~RL~~~~~~l 149 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS------GE-ESLQQIKLR-ADRLGLPTNNL 149 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe------CC-cCHHHHHHH-HHHhCCCccce
Confidence 4555555543323346899999999999999999999988766 666664 22 333333222 3344432221
Q ss_pred --CCC--HHHHHHHhC-CCcEEEEEeCCC
Q 036788 115 --ILD--IALSFRRLS-SRKFLIVLDDET 138 (352)
Q Consensus 115 --~~~--~~~l~~~l~-~k~~LlVlDdv~ 138 (352)
+.+ .+.+.+.+. .++-++|+|-+.
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 111 555555554 577899999984
No 240
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.54 E-value=0.005 Score=59.54 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=45.2
Q ss_pred HHHHHhhcCCCCCCCCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 11 NQNLKRLAEVSPCSNKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 11 ~~v~~~~~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+-.+++.+|... + +++|.+..++.+.+.+..+. -...+.++|++|+||||+|+.+++.+
T Consensus 5 ~~~~~kyRP~~~---~-diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 5 QVSSRKYRPQTF---S-EILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HHHHHHhCCCCH---H-HhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 334455554333 5 79999999999999987332 23568899999999999999999975
No 241
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.53 E-value=0.0063 Score=63.04 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=40.0
Q ss_pred CcccchhhHHHHHHHhc----CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 28 QLVEVESRVEEIESLLG----AGSKDVYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
..+|.+...+.+.+++. .+....+++.++|++|+|||++|+.+++.+...|
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 57899998888888664 1222345899999999999999999999876543
No 242
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.51 E-value=0.0096 Score=48.46 Aligned_cols=24 Identities=42% Similarity=0.624 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
++.|+|.+|+||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999764
No 243
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.51 E-value=0.015 Score=56.11 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc--
Q 036788 36 VEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN-- 113 (352)
Q Consensus 36 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-- 113 (352)
+..+-+.|..+=..-.++.|.|.+|+|||||+.+++......-..++|+. . . .+..++... ...++....
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs----~--E-es~~qi~~r-a~rlg~~~~~l 137 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS----G--E-ESASQIKLR-AERLGLPSDNL 137 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE----c--c-ccHHHHHHH-HHHcCCChhcE
Confidence 34555555533334569999999999999999999987654434556665 1 1 233343322 333332211
Q ss_pred cC---CCHHHHHHHhC-CCcEEEEEeCCCC
Q 036788 114 AI---LDIALSFRRLS-SRKFLIVLDDETC 139 (352)
Q Consensus 114 ~~---~~~~~l~~~l~-~k~~LlVlDdv~~ 139 (352)
.+ .+.+.+.+.+. .+.-++|+|.+..
T Consensus 138 ~~~~e~~l~~i~~~i~~~~~~lVVIDSIq~ 167 (446)
T PRK11823 138 YLLAETNLEAILATIEEEKPDLVVIDSIQT 167 (446)
T ss_pred EEeCCCCHHHHHHHHHhhCCCEEEEechhh
Confidence 11 12444544443 3566899999853
No 244
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.027 Score=54.85 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=24.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
..+++|+|.+|+||||++..++.....+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4799999999999999999998875443
No 245
>PRK09087 hypothetical protein; Validated
Probab=96.50 E-value=0.0043 Score=54.26 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+.+.|+|.+|+|||+|++.++...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999988764
No 246
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.49 E-value=0.0022 Score=53.33 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=20.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhC
Q 036788 53 LGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 53 v~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
+.|+|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999998753
No 247
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.49 E-value=0.0078 Score=55.38 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=25.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
...+++++|++|+||||++..++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999987654
No 248
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.49 E-value=0.0054 Score=53.37 Aligned_cols=36 Identities=33% Similarity=0.348 Sum_probs=24.4
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 35 RVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 35 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+.+.+...+... .+..|+|+||.|||+++..+...+
T Consensus 6 Q~~Ai~~~~~~~----~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSSN----GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTSS----E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC----CCEEEECCCCCChHHHHHHHHHHh
Confidence 444555555421 278899999999998888888776
No 249
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.49 E-value=0.0069 Score=59.12 Aligned_cols=89 Identities=20% Similarity=0.133 Sum_probs=49.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCC-CceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCC---------HHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNF-EGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILD---------IAL 120 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~---------~~~ 120 (352)
+..+|+|.+|+|||||++.+++.+.... +..+++.-+++-. ..+.++.+.+-..+.....+.+. .-.
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERp---eEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERP---EEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCch---hhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 5778999999999999999999875544 3444454343322 22333333221111111111110 122
Q ss_pred HHHHh--CCCcEEEEEeCCCChHH
Q 036788 121 SFRRL--SSRKFLIVLDDETCFKQ 142 (352)
Q Consensus 121 l~~~l--~~k~~LlVlDdv~~~~~ 142 (352)
+.+++ .++.+||++|++.....
T Consensus 494 ~Ae~fre~G~dVlillDSlTR~Ar 517 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSITRLGR 517 (672)
T ss_pred HHHHHHHcCCCEEEEEeCchHHHH
Confidence 33333 68999999999965433
No 250
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.48 E-value=0.0049 Score=52.74 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=28.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
....+++|+|.+|+||||||+.+...+...-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3457999999999999999999999875443334454
No 251
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.47 E-value=0.014 Score=55.65 Aligned_cols=92 Identities=15% Similarity=0.082 Sum_probs=52.3
Q ss_pred chhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcc
Q 036788 32 VESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQE 111 (352)
Q Consensus 32 R~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~ 111 (352)
|..-+.++.+.+.. ...++.|.|+-++||||+++.+.....+. .+++......... ..+.+....
T Consensus 22 ~~~~~~~l~~~~~~---~~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~-~~l~d~~~~-------- 86 (398)
T COG1373 22 RRKLLPRLIKKLDL---RPFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDR-IELLDLLRA-------- 86 (398)
T ss_pred HHhhhHHHHhhccc---CCcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcch-hhHHHHHHH--------
Confidence 33444555555442 22299999999999999997776665544 4555422111111 111111111
Q ss_pred cccCCCHHHHHHHhCCCcEEEEEeCCCChHHHHHhh
Q 036788 112 KNAILDIALSFRRLSSRKFLIVLDDETCFKQIKSLI 147 (352)
Q Consensus 112 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~ 147 (352)
+...-..++..++||.|.....|+..+
T Consensus 87 ---------~~~~~~~~~~yifLDEIq~v~~W~~~l 113 (398)
T COG1373 87 ---------YIELKEREKSYIFLDEIQNVPDWERAL 113 (398)
T ss_pred ---------HHHhhccCCceEEEecccCchhHHHHH
Confidence 111111278899999999888877654
No 252
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.47 E-value=0.0024 Score=51.48 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
+|.|.|.+|+||||+|+.++....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998763
No 253
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.46 E-value=0.0058 Score=56.41 Aligned_cols=56 Identities=29% Similarity=0.276 Sum_probs=39.2
Q ss_pred CCCCcccchhhHHH---HHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCce
Q 036788 25 NKNQLVEVESRVEE---IESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGS 81 (352)
Q Consensus 25 ~~~~~vGR~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~ 81 (352)
.. .+||..+..+. +.++...+.=.-+.+.+.|++|.|||+||..+++.+....+..
T Consensus 23 ~~-GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~ 81 (398)
T PF06068_consen 23 AD-GLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFV 81 (398)
T ss_dssp ET-TEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EE
T ss_pred cc-cccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCee
Confidence 35 79998877665 4556654442347888999999999999999999998776643
No 254
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.46 E-value=0.0052 Score=61.59 Aligned_cols=78 Identities=15% Similarity=0.104 Sum_probs=56.4
Q ss_pred CCCCCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC-CCCceEEEeeccccccCCCChHHH
Q 036788 22 PCSNKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS-NFEGSCCHQNVREESRRPGGLGCL 100 (352)
Q Consensus 22 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~s~~~~~~~~l 100 (352)
+..-+ .++|.++.++.|...+..+ +.+.++|.+|+||||+|+.+++.+-. +++..+|..+ .. .+...+
T Consensus 27 ~~~~~-~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-----p~-~~~~~~ 95 (637)
T PRK13765 27 ERLID-QVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-----PE-DPNNPK 95 (637)
T ss_pred cccHH-HcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-----CC-cchHHH
Confidence 33445 7999999999888877633 36889999999999999999987543 3567778763 22 556666
Q ss_pred HHHHHHHHhc
Q 036788 101 QQILLSKLLQ 110 (352)
Q Consensus 101 ~~~ll~~l~~ 110 (352)
++.+....+.
T Consensus 96 ~~~v~~~~G~ 105 (637)
T PRK13765 96 IRTVPAGKGK 105 (637)
T ss_pred HHHHHHhcCH
Confidence 6666654443
No 255
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.45 E-value=0.0059 Score=54.62 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=29.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.-.++.|.|.+|+|||++|.+++......-..++|+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3578999999999999999998876433444667775
No 256
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.44 E-value=0.041 Score=49.42 Aligned_cols=94 Identities=17% Similarity=0.065 Sum_probs=55.7
Q ss_pred HHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHH-Hh---cccc-cC
Q 036788 41 SLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSK-LL---QEKN-AI 115 (352)
Q Consensus 41 ~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~-l~---~~~~-~~ 115 (352)
+.|-.+-+.-+++=|+|+.|.||||+|.+++-..+..-...+|++ .... ++...+. .+... +. ...+ ..
T Consensus 51 ~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID----tE~~-l~p~r~~-~l~~~~~d~l~v~~~~~~ 124 (279)
T COG0468 51 EALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID----TEHA-LDPERAK-QLGVDLLDNLLVSQPDTG 124 (279)
T ss_pred HHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe----CCCC-CCHHHHH-HHHHhhhcceeEecCCCH
Confidence 334333345678899999999999999999887777767889997 2222 4444332 33333 11 1111 11
Q ss_pred CC----HHHHHHHhCCCcEEEEEeCCCCh
Q 036788 116 LD----IALSFRRLSSRKFLIVLDDETCF 140 (352)
Q Consensus 116 ~~----~~~l~~~l~~k~~LlVlDdv~~~ 140 (352)
.+ ++.+......+--|+|+|.+-..
T Consensus 125 e~q~~i~~~~~~~~~~~i~LvVVDSvaa~ 153 (279)
T COG0468 125 EQQLEIAEKLARSGAEKIDLLVVDSVAAL 153 (279)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEecCccc
Confidence 11 33333333334569999998543
No 257
>PTZ00035 Rad51 protein; Provisional
Probab=96.43 E-value=0.031 Score=51.93 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 36 VEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 36 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
...|-++|..+=..-.++.|+|.+|+|||||+..++-..
T Consensus 104 ~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 104 STQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred cHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 345555665443446799999999999999999887644
No 258
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.42 E-value=0.0024 Score=51.93 Aligned_cols=23 Identities=26% Similarity=0.680 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
++.|+|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 46899999999999999998873
No 259
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.42 E-value=0.0063 Score=55.83 Aligned_cols=35 Identities=31% Similarity=0.255 Sum_probs=27.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
.+++.+.|.||+||||+|.+.+-........+.-+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 47899999999999999999888766555444444
No 260
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.41 E-value=0.0028 Score=51.39 Aligned_cols=24 Identities=38% Similarity=0.654 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
+|.|.|.+|+||||+|+.+++...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999998864
No 261
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.41 E-value=0.0082 Score=54.86 Aligned_cols=56 Identities=25% Similarity=0.281 Sum_probs=42.8
Q ss_pred CCCCCCcccchhhHHH---HHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC
Q 036788 23 CSNKNQLVEVESRVEE---IESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFE 79 (352)
Q Consensus 23 ~~~~~~~vGR~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~ 79 (352)
+..+ .+||..+..+. +.++...+.-.-+.|.+.|++|.|||+||..+++.+...-+
T Consensus 36 ~~~d-G~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 36 FIGD-GLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred EcCC-cccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 3445 89998776654 56666655444578899999999999999999999876544
No 262
>PF13245 AAA_19: Part of AAA domain
Probab=96.40 E-value=0.017 Score=41.16 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=17.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.+++.|.|.||.|||+++......
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357888999999999555554443
No 263
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.40 E-value=0.012 Score=55.47 Aligned_cols=74 Identities=19% Similarity=0.137 Sum_probs=47.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCCHHHHHHHhCCC
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILDIALSFRRLSSR 128 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k 128 (352)
....+.|||..|.|||.|++++.+......+....+. .+.......++..+... ..+..++.. .
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y---------~~se~f~~~~v~a~~~~-----~~~~Fk~~y--~ 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY---------LTSEDFTNDFVKALRDN-----EMEKFKEKY--S 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe---------ccHHHHHHHHHHHHHhh-----hHHHHHHhh--c
Confidence 3678999999999999999999999877776433333 22233444444333321 144555555 3
Q ss_pred cEEEEEeCCC
Q 036788 129 KFLIVLDDET 138 (352)
Q Consensus 129 ~~LlVlDdv~ 138 (352)
-=++++||++
T Consensus 176 ~dlllIDDiq 185 (408)
T COG0593 176 LDLLLIDDIQ 185 (408)
T ss_pred cCeeeechHh
Confidence 3478889985
No 264
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.38 E-value=0.0026 Score=53.74 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 265
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.37 E-value=0.0048 Score=58.21 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=39.1
Q ss_pred CcccchhhHHHHHHHhcCC------------CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 28 QLVEVESRVEEIESLLGAG------------SKDVYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
+++|.++..+.+.-.+... ....+-|.++|++|+|||++|+.++..+...|
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 7999999988876544311 11246788999999999999999999876544
No 266
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.36 E-value=0.0069 Score=56.55 Aligned_cols=47 Identities=28% Similarity=0.224 Sum_probs=40.4
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+...+.+...+..+. ....+.|+|..|+||||+|..+++.+-
T Consensus 24 ~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 24 RLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred hccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHc
Confidence 79999999999999987442 345788999999999999999999764
No 267
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.35 E-value=0.094 Score=48.55 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
...+.++|+.|+|||++|..++..+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~l 46 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAAL 46 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHH
Confidence 5678899999999999999999964
No 268
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.34 E-value=0.0033 Score=51.13 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 036788 53 LGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 53 v~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
|.|+|++|+||||+|+.+++.+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998763
No 269
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.34 E-value=0.0036 Score=52.03 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=32.5
Q ss_pred cccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 29 LVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 29 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
+||....+.++.+.+..-.....-|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888877632222245669999999999999999984
No 270
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.34 E-value=0.0087 Score=56.99 Aligned_cols=84 Identities=14% Similarity=0.199 Sum_probs=48.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc----cCCC---------
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN----AILD--------- 117 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~~~~--------- 117 (352)
..++|.|..|+|||||++.++..... +..++. .+++-. ..+.++...++..-+.... ...+
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi~-lIGER~---rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVVG-LVGERG---REVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCCCC--CEEEEE-EEcCCh---HHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 57999999999999999888864322 344443 233222 3345555554433211111 1111
Q ss_pred ---HHHHHHHh--CCCcEEEEEeCCCCh
Q 036788 118 ---IALSFRRL--SSRKFLIVLDDETCF 140 (352)
Q Consensus 118 ---~~~l~~~l--~~k~~LlVlDdv~~~ 140 (352)
+-.+.+++ +++.+|+++||+...
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 22233333 589999999999644
No 271
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.34 E-value=0.0048 Score=52.00 Aligned_cols=33 Identities=24% Similarity=0.042 Sum_probs=26.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 53 LGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 53 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
+.|.|.+|+|||+||.+++......-..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999999887544445566665
No 272
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.34 E-value=0.0029 Score=51.94 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 036788 52 ALGIWGIGGIGKTTIARAIF 71 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~ 71 (352)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999988
No 273
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.34 E-value=0.0027 Score=54.28 Aligned_cols=23 Identities=43% Similarity=0.710 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+|+|.|.+|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 274
>PRK13949 shikimate kinase; Provisional
Probab=96.32 E-value=0.0034 Score=52.29 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
-|.|+|++|+||||+++.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998864
No 275
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.32 E-value=0.0088 Score=59.98 Aligned_cols=72 Identities=18% Similarity=0.110 Sum_probs=49.8
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEEeeccccccCCCChHHHHHHHHH
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSN-FEGSCCHQNVREESRRPGGLGCLQQILLS 106 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~s~~~~~~~~l~~~ll~ 106 (352)
.++|.++.++.+...+..+ +-+.++|++|+||||+|+.+++.+... |...+++.+.. .+..+++..+..
T Consensus 19 ~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~------~~~~~~~~~v~~ 88 (608)
T TIGR00764 19 QVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPE------DPNMPRIVEVPA 88 (608)
T ss_pred hccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCC------CCchHHHHHHHH
Confidence 7899999888888877633 255599999999999999999987554 44455555221 334445555554
Q ss_pred HHh
Q 036788 107 KLL 109 (352)
Q Consensus 107 ~l~ 109 (352)
.++
T Consensus 89 ~~g 91 (608)
T TIGR00764 89 GEG 91 (608)
T ss_pred hhc
Confidence 444
No 276
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0053 Score=58.82 Aligned_cols=47 Identities=28% Similarity=0.312 Sum_probs=34.1
Q ss_pred Ccccchhh---HHHHHHHhcCCC-----C--CeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESR---VEEIESLLGAGS-----K--DVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~---~~~l~~~L~~~~-----~--~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
++-|.|+. +++++++|.... + =++=|.++|+||.|||-||++++-+.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 56676654 556666776321 1 15678899999999999999999764
No 277
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.31 E-value=0.0054 Score=51.04 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=25.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
..++++|+|..|+|||||+..+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46799999999999999999999987653
No 278
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.30 E-value=0.003 Score=54.99 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
+|+|.|.+|+||||||+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998775
No 279
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.30 E-value=0.018 Score=55.10 Aligned_cols=87 Identities=14% Similarity=0.172 Sum_probs=52.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh-CCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc----cCCC-------
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS-SNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN----AILD------- 117 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~~~~------- 117 (352)
-+.++|.|.+|+|||+|+..++.... .+-+.++|.. +++-. ....++.+.+...-..... ...+
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~-iGeR~---rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCG-IGERC---REGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEE-eccCc---HHHHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 35789999999999999999988754 3234555553 33221 3455666665543111111 0111
Q ss_pred -----HHHHHHHh---CCCcEEEEEeCCCCh
Q 036788 118 -----IALSFRRL---SSRKFLIVLDDETCF 140 (352)
Q Consensus 118 -----~~~l~~~l---~~k~~LlVlDdv~~~ 140 (352)
+-.+.+++ +++.+|+++||+...
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 23344444 468999999999644
No 280
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.30 E-value=0.0036 Score=52.53 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999988754
No 281
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.29 E-value=0.0099 Score=52.40 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=34.6
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 38 EIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 38 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.|-++|..+=..-.++.|.|.+|+|||+||.++....-..-..++|+.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 344555544445679999999999999999998876434455667775
No 282
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.0037 Score=53.06 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=23.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..+|+|-||=|+||||||+.++++++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999876
No 283
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.29 E-value=0.072 Score=51.02 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=23.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
+.++.++|.+|+||||.|..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67999999999999999999998764
No 284
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.29 E-value=0.0042 Score=62.12 Aligned_cols=52 Identities=25% Similarity=0.326 Sum_probs=42.0
Q ss_pred CCCCCCcccchhhHHHHHHHhcCCC---CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 23 CSNKNQLVEVESRVEEIESLLGAGS---KDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 23 ~~~~~~~vGR~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
...+ .++|.++.++++..++.... ...+++.|+|++|+||||+++.++..+.
T Consensus 81 ~~ld-el~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 81 ETQH-ELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCHH-HhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3345 79999999999999987432 2346799999999999999999998653
No 285
>PTZ00494 tuzin-like protein; Provisional
Probab=96.28 E-value=0.063 Score=50.94 Aligned_cols=78 Identities=13% Similarity=0.020 Sum_probs=57.3
Q ss_pred CCCCCcccchhhHHHHHHHhcC-CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHH
Q 036788 24 SNKNQLVEVESRVEEIESLLGA-GSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQ 102 (352)
Q Consensus 24 ~~~~~~vGR~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~ 102 (352)
.+. .+|.|+.+-..+.+.|.. +...++++++.|.-|.||++|.+....+-. -..+|++ ++. .++-++
T Consensus 369 ~~~-~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~---~paV~VD-VRg-------~EDtLr 436 (664)
T PTZ00494 369 AEA-FEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG---VALVHVD-VGG-------TEDTLR 436 (664)
T ss_pred ccc-cccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC---CCeEEEE-ecC-------CcchHH
Confidence 345 799999999999998874 346789999999999999999998765432 3456665 432 244566
Q ss_pred HHHHHHhcccc
Q 036788 103 ILLSKLLQEKN 113 (352)
Q Consensus 103 ~ll~~l~~~~~ 113 (352)
.+.+.++.+..
T Consensus 437 sVVKALgV~nv 447 (664)
T PTZ00494 437 SVVRALGVSNV 447 (664)
T ss_pred HHHHHhCCCCh
Confidence 67777776655
No 286
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.27 E-value=0.028 Score=51.76 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 36 VEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 36 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
...|-.+|..+-..-.++.|+|.+|+|||+|+..++..
T Consensus 82 ~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 82 SKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 34555666544345679999999999999999998864
No 287
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.27 E-value=0.006 Score=54.48 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC
Q 036788 36 VEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFE 79 (352)
Q Consensus 36 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~ 79 (352)
-.++...+.....+..+|+|+|.||+|||||.-++...+..+-.
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 34566666555566789999999999999999999988765543
No 288
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.27 E-value=0.025 Score=50.51 Aligned_cols=84 Identities=20% Similarity=0.136 Sum_probs=47.4
Q ss_pred eEEEEEEcCCCchHHHHH-HHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc----cC-CC------
Q 036788 50 VYALGIWGIGGIGKTTIA-RAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN----AI-LD------ 117 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa-~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~~-~~------ 117 (352)
-+.++|.|.+|+|||+|| ..+.++. .-+..+.+..+++-. ....++.+.+...-..... .. .+
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGer~---~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQKA---STVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEecccch---HHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 357899999999999996 4455543 234443444343322 3355666665533111110 00 00
Q ss_pred ---------HHHHHHHhCCCcEEEEEeCCCCh
Q 036788 118 ---------IALSFRRLSSRKFLIVLDDETCF 140 (352)
Q Consensus 118 ---------~~~l~~~l~~k~~LlVlDdv~~~ 140 (352)
++.++. +++.+|+++||+...
T Consensus 144 ~a~~~a~aiAE~fr~--~G~~Vlvl~DslTr~ 173 (274)
T cd01132 144 LAPYTGCAMGEYFMD--NGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHH--CCCCEEEEEcChHHH
Confidence 233333 579999999998643
No 289
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.26 E-value=0.0045 Score=52.87 Aligned_cols=25 Identities=36% Similarity=0.311 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
..++.|.|.+|+||||+|+.++++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999874
No 290
>PRK07004 replicative DNA helicase; Provisional
Probab=96.24 E-value=0.049 Score=52.91 Aligned_cols=53 Identities=15% Similarity=0.038 Sum_probs=36.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCC-CceEEEeeccccccCCCChHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNF-EGSCCHQNVREESRRPGGLGCLQQILLSKLL 109 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~ 109 (352)
-.++.|-|.||+|||++|..++....... ..++|+ |-. -+..++...++....
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~f------SlE-M~~~ql~~R~la~~~ 266 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVF------SME-MPGTQLAMRMLGSVG 266 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEE------eCC-CCHHHHHHHHHHhhc
Confidence 45888999999999999999988653222 233333 223 556777777775543
No 291
>PRK13948 shikimate kinase; Provisional
Probab=96.23 E-value=0.0043 Score=52.25 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..+.|.++|+.|+||||+++.+++.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456889999999999999999998864
No 292
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.22 E-value=0.0068 Score=57.24 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=39.8
Q ss_pred CcccchhhHHHHHHHhcC---------CC---CCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 28 QLVEVESRVEEIESLLGA---------GS---KDVYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~---------~~---~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
+++|.+...+.+...+.. +. -....+.++|++|+|||+||+.++..+...|
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 799999999988876632 00 0136789999999999999999999875543
No 293
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.22 E-value=0.0049 Score=52.01 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=30.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++.|+|+.|+|||||+..+..+....|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 368999999999999999999999888886555544
No 294
>PRK13946 shikimate kinase; Provisional
Probab=96.21 E-value=0.0042 Score=52.49 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+.|.+.|++|+||||+++.+++++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999999874
No 295
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.20 E-value=0.0053 Score=54.58 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=22.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
+|.++|++|+||||+|+++++.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999987543
No 296
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.20 E-value=0.0068 Score=48.77 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=26.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC-CCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISS-NFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~ 85 (352)
++|.|+|..|+|||||++.+.+.+.. .+...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 47999999999999999999998764 455544443
No 297
>PRK14530 adenylate kinase; Provisional
Probab=96.20 E-value=0.0044 Score=53.78 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.|.|.|++|+||||+|+.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999876
No 298
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.19 E-value=0.0036 Score=50.19 Aligned_cols=26 Identities=23% Similarity=0.562 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.++|+|++|+|||||++.+.+.....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999999865444
No 299
>PRK13975 thymidylate kinase; Provisional
Probab=96.18 E-value=0.005 Score=52.43 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
..|+|.|+.|+||||+|+.+++.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999998764
No 300
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.18 E-value=0.0044 Score=52.01 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.|.|.|.+|+||||+|+.++++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999984
No 301
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.17 E-value=0.022 Score=50.02 Aligned_cols=48 Identities=19% Similarity=0.148 Sum_probs=34.0
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 38 EIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 38 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.|-+.|..+-..-.++.|+|.+|+|||+||.+++.....+-..++|+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 344455444445679999999999999999999776433444566665
No 302
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.16 E-value=0.006 Score=59.78 Aligned_cols=47 Identities=32% Similarity=0.423 Sum_probs=38.3
Q ss_pred CcccchhhHHHHHHHhcC---CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGA---GSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
++.--.+-++++..||.. +....+++.++|++|+||||.++.+++.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 566667788899999873 33345799999999999999999999975
No 303
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.15 E-value=0.0055 Score=52.81 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=23.5
Q ss_pred CCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 46 GSKDVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 46 ~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.....+.+.|+|++|+|||||+..+.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3445688999999999999999998754
No 304
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.14 E-value=0.014 Score=53.43 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=35.2
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
.++=..+....+...+..+ +.|.|.|.+|+||||+|+.++..+.-.|
T Consensus 46 ~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 4555555666677766532 3588999999999999999999876543
No 305
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.14 E-value=0.021 Score=54.51 Aligned_cols=85 Identities=18% Similarity=0.179 Sum_probs=48.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc----cCCC--------
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN----AILD-------- 117 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~~~~-------- 117 (352)
-..++|.|..|+|||||++.++..... +..++.. +++-. ..+.++....+..-+.... ...+
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~~--d~~v~~~-iGER~---rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNADA--DVSVIGL-IGERG---REVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCC--CEEEEEE-EecCc---HHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 458899999999999999988876543 2334332 33221 3344444444332211111 1111
Q ss_pred ----HHHHHHHh--CCCcEEEEEeCCCCh
Q 036788 118 ----IALSFRRL--SSRKFLIVLDDETCF 140 (352)
Q Consensus 118 ----~~~l~~~l--~~k~~LlVlDdv~~~ 140 (352)
+-.+.+++ +++.+|+++||+...
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 12233333 589999999999644
No 306
>PRK10536 hypothetical protein; Provisional
Probab=96.12 E-value=0.015 Score=51.40 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=39.5
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH-h-hCCCCceE
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDK-I-SSNFEGSC 82 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~-~-~~~f~~~~ 82 (352)
.+.+|......+..++.. ..++.+.|.+|+|||+||.+++.+ + ...|...+
T Consensus 56 ~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 56 PILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred cccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 467788888888888863 249999999999999999999885 4 44455443
No 307
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.11 E-value=0.013 Score=50.64 Aligned_cols=36 Identities=31% Similarity=0.404 Sum_probs=26.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeec
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNV 87 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~ 87 (352)
.|+|+|-||+||||+|..++.++..+-...+.+.|.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDa 37 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDA 37 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeC
Confidence 589999999999999999777755443233444433
No 308
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.013 Score=57.70 Aligned_cols=51 Identities=25% Similarity=0.376 Sum_probs=34.7
Q ss_pred CcccchhhHHHHHHHhc---C--------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 28 QLVEVESRVEEIESLLG---A--------GSKDVYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~---~--------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
...|.+...+.+.+... . +-...+.+.++|++|.|||.||++++......|
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~f 304 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRF 304 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeE
Confidence 45555555555544332 1 123456889999999999999999999665544
No 309
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.11 E-value=0.0053 Score=50.68 Aligned_cols=28 Identities=32% Similarity=0.520 Sum_probs=24.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
+-|.++||.|+||||+.+.+++.+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999999876655
No 310
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.10 E-value=0.016 Score=53.48 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 36 VEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 36 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
..++.+.+.....+..+|+|.|.+|+|||||+..+...++..
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 344555444334567899999999999999999999877654
No 311
>PRK05973 replicative DNA helicase; Provisional
Probab=96.10 E-value=0.013 Score=51.43 Aligned_cols=36 Identities=11% Similarity=-0.061 Sum_probs=27.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
-.++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 458999999999999999999887544434455554
No 312
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.053 Score=54.45 Aligned_cols=93 Identities=20% Similarity=0.264 Sum_probs=55.0
Q ss_pred CcccchhhHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCCh
Q 036788 28 QLVEVESRVEEIESLLGA----------GSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGL 97 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~ 97 (352)
++=|-++...+|.+-+.. +-....=|.+||+||.|||-||++|+.+..-. |+. +..
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-----FlS----VKG----- 738 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-----FLS----VKG----- 738 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-----EEe----ecC-----
Confidence 566677777777765542 11224567899999999999999999775432 333 211
Q ss_pred HHHHHHHHHHHhcccccCCCHHHHHHHh-CCCcEEEEEeCCCCh
Q 036788 98 GCLQQILLSKLLQEKNAILDIALSFRRL-SSRKFLIVLDDETCF 140 (352)
Q Consensus 98 ~~l~~~ll~~l~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~ 140 (352)
.++++.-+ ++.+ ++...+.+.- .-++|+|.||++++.
T Consensus 739 PELLNMYV----GqSE--~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 739 PELLNMYV----GQSE--ENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHHHHh----cchH--HHHHHHHHHhhccCCeEEEecccccc
Confidence 12222222 1111 1133333333 348999999998653
No 313
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.012 Score=56.53 Aligned_cols=82 Identities=22% Similarity=0.101 Sum_probs=48.5
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCCHHHHHH---
Q 036788 47 SKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILDIALSFR--- 123 (352)
Q Consensus 47 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~--- 123 (352)
..+...+.+.|++|+|||+||..++.. ..|+.+=.+. .. .- -++.+-. + ...+..
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS---pe-~m-iG~sEsa------------K---c~~i~k~F~ 592 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS---PE-DM-IGLSESA------------K---CAHIKKIFE 592 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC---hH-Hc-cCccHHH------------H---HHHHHHHHH
Confidence 345678889999999999999999854 4577433322 10 00 0110000 0 222222
Q ss_pred -HhCCCcEEEEEeCCCChHHHHHhhccC
Q 036788 124 -RLSSRKFLIVLDDETCFKQIKSLIGSH 150 (352)
Q Consensus 124 -~l~~k~~LlVlDdv~~~~~~~~l~~~~ 150 (352)
.-+..--.||+||+...-+|-.+.|..
T Consensus 593 DAYkS~lsiivvDdiErLiD~vpIGPRf 620 (744)
T KOG0741|consen 593 DAYKSPLSIIVVDDIERLLDYVPIGPRF 620 (744)
T ss_pred HhhcCcceEEEEcchhhhhcccccCchh
Confidence 234455789999998777777665443
No 314
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.09 E-value=0.0041 Score=51.32 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 036788 53 LGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 53 v~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 315
>PLN02674 adenylate kinase
Probab=96.09 E-value=0.056 Score=47.65 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
...|.|.|+||+||||+|+.++++.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3567899999999999999998865
No 316
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.08 E-value=0.015 Score=53.42 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=36.2
Q ss_pred HHHHHHHhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 36 VEEIESLLG-AGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 36 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
...|-..|. .+=+.-+++-|+|.+|+||||||.+++......-..++|+.
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 40 SLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred CHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 344555554 33345679999999999999999998887665555566775
No 317
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.08 E-value=0.0051 Score=49.15 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+-|.|+|-||+||||||.+++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 3467899999999999999999753
No 318
>PRK15453 phosphoribulokinase; Provisional
Probab=96.08 E-value=0.011 Score=53.01 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=24.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
....+|+|.|.+|+||||+|+.+++.++.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34579999999999999999999986643
No 319
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.07 E-value=0.016 Score=50.71 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=33.2
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 38 EIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 38 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.|-+.|..+=..-.++.|.|.+|+|||+||.+++......-..++|+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 344444333334579999999999999999998775433445667775
No 320
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.07 E-value=0.0092 Score=53.48 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 36 VEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 36 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
++++..++..+ .-+.+.|.+|+|||++|+.+++...
T Consensus 11 ~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 11 TSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred HHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 34444555422 2456899999999999999998653
No 321
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.07 E-value=0.0099 Score=56.65 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=37.0
Q ss_pred CcccchhhHHHHHHHhc-------CC-----C--CCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 28 QLVEVESRVEEIESLLG-------AG-----S--KDVYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~-------~~-----~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
.++|.+..++.+...+. .. + -..+-+.++|++|+|||++|+.++......|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 78999999887754431 11 0 0135688999999999999999998764433
No 322
>PRK04182 cytidylate kinase; Provisional
Probab=96.07 E-value=0.0056 Score=51.18 Aligned_cols=24 Identities=42% Similarity=0.587 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
+|+|.|++|+||||+|+.+++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998864
No 323
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.05 E-value=0.01 Score=51.08 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=26.5
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 47 SKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 47 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
..++++++++|..|+|||||..++.+....
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 457999999999999999999999987654
No 324
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.05 E-value=0.0075 Score=49.17 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
..+++|+|.||+||||+...+...+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998887765
No 325
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.04 E-value=0.0028 Score=50.83 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=32.2
Q ss_pred ccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 30 VEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 30 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
||....++++.+.+..-.....-|.|+|.+|+||+++|+.+++.-.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 5777777777776653223335678999999999999998887543
No 326
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.04 E-value=0.06 Score=52.07 Aligned_cols=210 Identities=16% Similarity=0.098 Sum_probs=104.2
Q ss_pred hhhHHHHHHHhc-----CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE--------eeccccccC----CC
Q 036788 33 ESRVEEIESLLG-----AGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCH--------QNVREESRR----PG 95 (352)
Q Consensus 33 ~~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~--------~~~~~~s~~----~~ 95 (352)
..-+.++..||. ...-+.+++.|+|++|+||||..+.++..+.-. ..=|. .++...+.. ..
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~--~~Ew~Npi~~~~~~~~h~~t~~~~~~~~ 165 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQ--LIEWSNPINLKEPENLHNETSFLMFPYQ 165 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCce--eeeecCCccccccccccccchhcccchh
Confidence 445678888887 455567899999999999999999998864321 22233 111111110 00
Q ss_pred ChHHHHHHHHHHHhcccccCCCHHHHHHHhCCCcEEEEEeCCCChHHHHHhhccCCchhHHHHHHHHhcCCchhHHHHhh
Q 036788 96 GLGCLQQILLSKLLQEKNAILDIALSFRRLSSRKFLIVLDDETCFKQIKSLIGSHGFEELSSRVIKYAQGVPLAIEILGC 175 (352)
Q Consensus 96 ~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~i~~~~~glPLal~~~~~ 175 (352)
+.....+..+........ ......-+++++.||.+||+-+....+... .+.++.+ .+-.-+-+|+.+.+.-.
T Consensus 166 s~L~~fesFler~~kyg~----l~~~g~~~~~~~~liLveDLPn~~~~d~~~---~f~evL~-~y~s~g~~PlIf~iTd~ 237 (634)
T KOG1970|consen 166 SQLAVFESFLLRATKYGS----LQMSGDDLRTDKKLILVEDLPNQFYRDDSE---TFREVLR-LYVSIGRCPLIFIITDS 237 (634)
T ss_pred hHHHHHHHHHHHHHhhch----hhhcccccccCceEEEeeccchhhhhhhHH---HHHHHHH-HHHhcCCCcEEEEEecc
Confidence 111111122211111000 222233345667888999985443221110 1233334 55566778866544433
Q ss_pred hhcCCCHHHHHHHHHHhcCCCChhHHHHHhhcccCCCh-hhHHHHHhhhhc-c---CCC---CHHHHHHHHHhCCCchHH
Q 036788 176 FLFEKEKQFWESAINKLKRIPNLEIQKVLKISFDGLDD-EEKNILLDIACF-F---KWK---NKDLVIKFLNACSFTAQI 247 (352)
Q Consensus 176 ~L~~~~~~~w~~~l~~l~~~~~~~v~~~l~~sy~~L~~-~~k~~f~~la~f-p---~~~---~~~~l~~~~~~~~~~~~~ 247 (352)
...+.+ ...+..-..+. ....+-.++|+-..+ -.|.|+-.++.- . .++ ....+..+..+++-+...
T Consensus 238 ~~~g~n-nq~rlf~~d~q-----~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s~GDIRs 311 (634)
T KOG1970|consen 238 LSNGNN-NQDRLFPKDIQ-----EEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGSGGDIRS 311 (634)
T ss_pred ccCCCc-chhhhchhhhh-----hccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhcCccHHH
Confidence 333311 11111111111 122344566666655 444444433322 1 222 245666677777778888
Q ss_pred hHHHHhhcCCc
Q 036788 248 GISSLVDKSLI 258 (352)
Q Consensus 248 ~l~~L~~~sLl 258 (352)
++..|.=.+..
T Consensus 312 AInsLQlsssk 322 (634)
T KOG1970|consen 312 AINSLQLSSSK 322 (634)
T ss_pred HHhHhhhhccc
Confidence 88888766533
No 327
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.03 E-value=0.017 Score=45.15 Aligned_cols=47 Identities=26% Similarity=0.393 Sum_probs=34.4
Q ss_pred CcccchhhHH----HHHHHhcC-CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVE----EIESLLGA-GSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~----~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|..-..+ .|...+.. ....+-|++.+|.+|+|||-+++.+++.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 5777664444 44555543 34557799999999999999999999863
No 328
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.03 E-value=0.06 Score=48.25 Aligned_cols=101 Identities=13% Similarity=0.062 Sum_probs=57.3
Q ss_pred ccchhh-HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHH
Q 036788 30 VEVESR-VEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKL 108 (352)
Q Consensus 30 vGR~~~-~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l 108 (352)
.|...+ .+.+..++. ....++.|.|..|+||||++..+.+.+...-..++.+.+-.+ ..+..+ .++
T Consensus 62 lg~~~~~~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E-----~~~~~~-----~q~ 128 (264)
T cd01129 62 LGLKPENLEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVE-----YQIPGI-----NQV 128 (264)
T ss_pred cCCCHHHHHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCce-----ecCCCc-----eEE
Confidence 344333 344444443 223589999999999999999988876432122333432211 111100 000
Q ss_pred hcccccCC-C-HHHHHHHhCCCcEEEEEeCCCChHHHH
Q 036788 109 LQEKNAIL-D-IALSFRRLSSRKFLIVLDDETCFKQIK 144 (352)
Q Consensus 109 ~~~~~~~~-~-~~~l~~~l~~k~~LlVlDdv~~~~~~~ 144 (352)
... .... + .+.++..++..+=.++++++.+.+...
T Consensus 129 ~v~-~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 129 QVN-EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred EeC-CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 000 0111 1 677888888889999999998776544
No 329
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.03 E-value=0.012 Score=58.58 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=38.4
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
..+.|.+..+.|.+..........+|.|+|++|+||||+|+.++..+..
T Consensus 370 ~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 370 EWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred hhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 5667777777777766544444568899999999999999999998764
No 330
>PLN02200 adenylate kinase family protein
Probab=96.03 E-value=0.0067 Score=53.33 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+.+|.|.|++|+||||+|+.+++..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999998865
No 331
>PRK14527 adenylate kinase; Provisional
Probab=96.02 E-value=0.0065 Score=51.63 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
...++.|.|++|+||||+|+.++++..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999988753
No 332
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=96.02 E-value=0.0097 Score=54.51 Aligned_cols=27 Identities=37% Similarity=0.448 Sum_probs=23.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
+++.+.|-||+||||+|.+.+-....+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~ 28 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARR 28 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhC
Confidence 688999999999999999888765444
No 333
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.093 Score=54.19 Aligned_cols=100 Identities=15% Similarity=0.203 Sum_probs=68.5
Q ss_pred CcccchhhHHHHHHHhcCCC----C--CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHH
Q 036788 28 QLVEVESRVEEIESLLGAGS----K--DVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQ 101 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~----~--~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~ 101 (352)
.++|.++.+..|.+.+.... + ....+.+.|+.|+|||-||++++..+-+..+..+-+ ++.+..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~Iri-----------Dmse~~ 631 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRL-----------DMSEFQ 631 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEe-----------chhhhh
Confidence 78999999999988876322 1 356788999999999999999999885555543333 233333
Q ss_pred HHHHHHHhcccccC---CCHHHHHHHhCCCcE-EEEEeCCCCh
Q 036788 102 QILLSKLLQEKNAI---LDIALSFRRLSSRKF-LIVLDDETCF 140 (352)
Q Consensus 102 ~~ll~~l~~~~~~~---~~~~~l~~~l~~k~~-LlVlDdv~~~ 140 (352)
. ...+.+..+.. +....|.+.++.+++ +|+||||+..
T Consensus 632 e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 632 E--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred h--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 3 33333333311 226788888988876 6668999744
No 334
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.01 E-value=0.006 Score=50.36 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036788 53 LGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 53 v~I~G~gGiGKTtLa~~~~~~ 73 (352)
|+|+|.+|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 335
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.01 E-value=0.01 Score=55.00 Aligned_cols=49 Identities=31% Similarity=0.260 Sum_probs=39.0
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCc
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEG 80 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~ 80 (352)
.++|+++.+..+...+..+ +-+.+.|.+|+|||+||+.++..+...|-.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~~ 73 (329)
T COG0714 25 VVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFVR 73 (329)
T ss_pred eeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence 6899888888876666533 357799999999999999999988755443
No 336
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.99 E-value=0.0052 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
++++|+|++|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999999853
No 337
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.98 E-value=0.022 Score=48.42 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=23.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
..|+|.|..|+||||+++.+++.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999998765
No 338
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.97 E-value=0.0047 Score=55.59 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+-+.++|++|+|||++++......
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCS
T ss_pred CcEEEECCCCCchhHHHHhhhccC
Confidence 456899999999999999988654
No 339
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=95.97 E-value=0.022 Score=55.02 Aligned_cols=87 Identities=16% Similarity=0.211 Sum_probs=51.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCC-CceEEEeeccccccCCCChHHHHHHHHHHHh--cc------cc---cCCC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNF-EGSCCHQNVREESRRPGGLGCLQQILLSKLL--QE------KN---AILD 117 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~--~~------~~---~~~~ 117 (352)
-+.++|.|-+|+|||+|+..+...+.... +.+++. .+++-. ....++...++..-. .. .. ...+
T Consensus 161 GQR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~-lIGERg---rEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd 236 (494)
T CHL00060 161 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGERT---REGNDLYMEMKESGVINEQNIAESKVALVYGQMN 236 (494)
T ss_pred CCEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEE-EeccCc---hHHHHHHHHHHhcCccccCcccccceEEEEECCC
Confidence 35789999999999999999888744322 344444 344322 335666666654110 00 00 1111
Q ss_pred ------------HHHHHHHhC--C-CcEEEEEeCCCCh
Q 036788 118 ------------IALSFRRLS--S-RKFLIVLDDETCF 140 (352)
Q Consensus 118 ------------~~~l~~~l~--~-k~~LlVlDdv~~~ 140 (352)
+-.+.++++ + +.+||++||+...
T Consensus 237 ~p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 237 EPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 334555653 3 4999999999654
No 340
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.03 Score=50.06 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=36.7
Q ss_pred CcccchhhHHHHHHHhc----------CCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLG----------AGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
++-|-+...+.|.+... ......+-|.++|++|.||+-||++|+....
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 57788888887776432 1223367889999999999999999998754
No 341
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.96 E-value=0.0097 Score=58.52 Aligned_cols=35 Identities=23% Similarity=0.435 Sum_probs=28.0
Q ss_pred HHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 40 ESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 40 ~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+.+....+++.+|+|.|.+|+||||||+.+...+
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 33444445668899999999999999999998864
No 342
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.96 E-value=0.0066 Score=50.49 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+.|+|++|+||||+|+.+++++.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999998864
No 343
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.95 E-value=0.0063 Score=50.82 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..|.|.|+.|+||||+++.+++...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4689999999999999999998753
No 344
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.94 E-value=0.036 Score=51.14 Aligned_cols=80 Identities=10% Similarity=0.179 Sum_probs=50.4
Q ss_pred chhhHHHHHHHhcCCC-CCeEEEEEEcCCCchHHHHHHHHHHHhhCCC---CceEEEeeccccccCCCChHHHHHHHHHH
Q 036788 32 VESRVEEIESLLGAGS-KDVYALGIWGIGGIGKTTIARAIFDKISSNF---EGSCCHQNVREESRRPGGLGCLQQILLSK 107 (352)
Q Consensus 32 R~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f---~~~~~~~~~~~~s~~~~~~~~l~~~ll~~ 107 (352)
|+...+.|.+.+...+ ....+|+|.|.=|+||||+.+.+.+.+.... ...+++......... .....++..+...
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~-~~~~~~~~~l~~~ 79 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGED-DLWASFLEELFDQ 79 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcc-hHHHHHHHHHHHH
Confidence 3455667777776443 5678999999999999999999999887761 112222211111112 3345666666666
Q ss_pred Hhccc
Q 036788 108 LLQEK 112 (352)
Q Consensus 108 l~~~~ 112 (352)
+....
T Consensus 80 l~~~~ 84 (325)
T PF07693_consen 80 LEKHF 84 (325)
T ss_pred HHHhc
Confidence 55443
No 345
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.94 E-value=0.023 Score=51.52 Aligned_cols=28 Identities=36% Similarity=0.425 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..+.+|+|.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999988776654
No 346
>PRK08149 ATP synthase SpaL; Validated
Probab=95.94 E-value=0.029 Score=53.47 Aligned_cols=85 Identities=14% Similarity=0.217 Sum_probs=48.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc-------cCCC-----
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN-------AILD----- 117 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-------~~~~----- 117 (352)
-..++|.|.+|+|||||+..++..... +..++. .+ ......+..+....+........ +.+.
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~--dv~v~g-~I---g~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEA--DVFVIG-LI---GERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCC--CeEEEE-EE---eeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 357899999999999999988764321 222222 12 21114456666666543221111 0000
Q ss_pred ----HHHHHHHh--CCCcEEEEEeCCCCh
Q 036788 118 ----IALSFRRL--SSRKFLIVLDDETCF 140 (352)
Q Consensus 118 ----~~~l~~~l--~~k~~LlVlDdv~~~ 140 (352)
+..+.+++ ++|.+||++||+...
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 22223332 589999999999644
No 347
>PRK14529 adenylate kinase; Provisional
Probab=95.93 E-value=0.033 Score=48.43 Aligned_cols=86 Identities=21% Similarity=0.202 Sum_probs=45.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhCC-CCceEEE-eeccccccCCCChHHHHHHHHHHHhcccccCCC---HHHHHHHhCC
Q 036788 53 LGIWGIGGIGKTTIARAIFDKISSN-FEGSCCH-QNVREESRRPGGLGCLQQILLSKLLQEKNAILD---IALSFRRLSS 127 (352)
Q Consensus 53 v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~-~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~---~~~l~~~l~~ 127 (352)
|.|.|++|+||||+|+.+++...-. .+.+-.+ .. +... ..+....+.++ ....-+++ ...+.+.+..
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~---i~~~-t~lg~~i~~~i----~~G~lvpdei~~~lv~~~l~~ 74 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREH---IGGG-TELGKKAKEYI----DRGDLVPDDITIPMILETLKQ 74 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhh---ccCC-ChHHHHHHHHH----hccCcchHHHHHHHHHHHHhc
Confidence 7789999999999999999886432 2211111 11 1111 22222222332 22223333 5556666543
Q ss_pred C-cEEEEEeCC-CChHHHHHh
Q 036788 128 R-KFLIVLDDE-TCFKQIKSL 146 (352)
Q Consensus 128 k-~~LlVlDdv-~~~~~~~~l 146 (352)
. .--+|||+. .+..|.+.|
T Consensus 75 ~~~~g~iLDGfPRt~~Qa~~l 95 (223)
T PRK14529 75 DGKNGWLLDGFPRNKVQAEKL 95 (223)
T ss_pred cCCCcEEEeCCCCCHHHHHHH
Confidence 2 345889998 345554433
No 348
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.93 E-value=0.022 Score=48.28 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
+|+|.|+.|+||||+++.+++.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998754
No 349
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.92 E-value=0.02 Score=52.40 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=30.3
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 37 EEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 37 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
..+.+-+........+++|.|.+|+|||||+..+.......
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 33444444334567899999999999999999999875443
No 350
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.92 E-value=0.0097 Score=54.72 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=42.7
Q ss_pred CcccchhhHHHHHHHhcCCC----CCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLGAGS----KDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.|+|.++.++++++.+.... ..-+++.+.|+.|.||||||..+.+-+...
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 79999999999999987422 346899999999999999999998876654
No 351
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.91 E-value=0.19 Score=47.21 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++++++|+.|+||||-...++.+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH
Confidence 6899999999999998766666653
No 352
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.91 E-value=0.074 Score=49.44 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC------CCCceEEEe
Q 036788 36 VEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS------NFEGSCCHQ 85 (352)
Q Consensus 36 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~~~ 85 (352)
...|-+.|..+-..-.++-|+|.+|+|||+|+..++-...- .-..++|++
T Consensus 109 ~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId 164 (342)
T PLN03186 109 SRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 164 (342)
T ss_pred CHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE
Confidence 34555556543344678899999999999999988854321 112567776
No 353
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.90 E-value=0.0066 Score=52.09 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=22.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+++|+|++|+|||||++.++...
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999999864
No 354
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.90 E-value=0.0076 Score=46.60 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=19.4
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036788 53 LGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 53 v~I~G~gGiGKTtLa~~~~~~ 73 (352)
|.|.|.+|+|||||.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 689999999999999999974
No 355
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.89 E-value=0.012 Score=53.03 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=28.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
++++|+|.+|+|||||+.++...++.+. .+..+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5899999999999999999999988776 455554
No 356
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.89 E-value=0.073 Score=47.78 Aligned_cols=52 Identities=15% Similarity=-0.020 Sum_probs=35.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEEeeccccccCCCChHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSN-FEGSCCHQNVREESRRPGGLGCLQQILLSKL 108 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l 108 (352)
-.++.|.|.+|+||||++.+++...... -..++|+. . . .+...+...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS----~--E-~~~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS----L--E-EPVVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE----c--c-cCHHHHHHHHHHHH
Confidence 3588899999999999999998876444 34556665 1 1 33455666655443
No 357
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.88 E-value=0.088 Score=53.88 Aligned_cols=124 Identities=15% Similarity=0.089 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCC----CCCcccchhhHHHHHHHhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC
Q 036788 5 LVKEVVNQNLKRLAEVSPCSN----KNQLVEVESRVEEIESLLG-AGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFE 79 (352)
Q Consensus 5 ~i~~i~~~v~~~~~~~~~~~~----~~~~vGR~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~ 79 (352)
.+++.+.++-+++.......- .....-...-...|-.+|. .+=..-+++-|+|.+|+||||||..++......-.
T Consensus 10 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~ 89 (790)
T PRK09519 10 ALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG 89 (790)
T ss_pred HHHHHHHHHHHHhccchhcccccccccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 355566666555543321100 0012222333455666665 33344678899999999999999987776544445
Q ss_pred ceEEEeeccccccCCCChHHHHHHHHHHHhcccc-----cCCC----HHHHHHHhC-CCcEEEEEeCCC
Q 036788 80 GSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN-----AILD----IALSFRRLS-SRKFLIVLDDET 138 (352)
Q Consensus 80 ~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~----~~~l~~~l~-~k~~LlVlDdv~ 138 (352)
.++|+. .... +. ...+..++.... .... ...+...++ ++.-+||+|.+.
T Consensus 90 ~v~yId----~E~t-~~-----~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 90 VAAFID----AEHA-LD-----PDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred cEEEEC----Cccc-hh-----HHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 667776 2222 22 124444444322 1111 333344343 456789999985
No 358
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.88 E-value=0.011 Score=60.93 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=41.0
Q ss_pred CcccchhhHHHHHHHhcC----CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 28 QLVEVESRVEEIESLLGA----GSKDVYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
..+|.+...++|.++|.. +.....++.++|++|+||||+|+.++......|
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 689999999999988762 112345799999999999999999998765443
No 359
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.87 E-value=0.054 Score=45.11 Aligned_cols=76 Identities=8% Similarity=-0.042 Sum_probs=42.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhccccc---CCC----HHHHHHH
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNA---ILD----IALSFRR 124 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~---~~~----~~~l~~~ 124 (352)
++.|.|.+|+||||+|..++.+... ..+++. +.. ..-.+....+-......... ++. ...+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~---~~~~ia-----t~~-~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~ 73 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL---QVLYIA-----TAQ-PFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD 73 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC---CcEeCc-----CCC-CChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh
Confidence 6889999999999999999876432 234443 222 33345556664443333221 221 2333332
Q ss_pred hCCCcEEEEEeCC
Q 036788 125 LSSRKFLIVLDDE 137 (352)
Q Consensus 125 l~~k~~LlVlDdv 137 (352)
..+ .-++++|.+
T Consensus 74 ~~~-~~~VlID~L 85 (170)
T PRK05800 74 AAP-GRCVLVDCL 85 (170)
T ss_pred cCC-CCEEEehhH
Confidence 332 336777876
No 360
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.87 E-value=0.1 Score=50.18 Aligned_cols=53 Identities=19% Similarity=0.055 Sum_probs=36.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh-CCCCceEEEeeccccccCCCChHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS-SNFEGSCCHQNVREESRRPGGLGCLQQILLSKLL 109 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~ 109 (352)
-.++.|.|.||+|||++|..++.... .+-..++|++ .. -+...+...++....
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS------lE-m~~~~l~~Rl~~~~~ 247 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS------LE-MSAEQLGERLLASKS 247 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CC-CCHHHHHHHHHHHHc
Confidence 35889999999999999999997653 2222344443 23 556777777766543
No 361
>PRK04328 hypothetical protein; Provisional
Probab=95.86 E-value=0.019 Score=51.02 Aligned_cols=48 Identities=15% Similarity=0.096 Sum_probs=33.8
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 38 EIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 38 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.|-+.|..+=..-.++.|.|.+|+|||+||.+++......-..++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344445433344578999999999999999998876434445667775
No 362
>PRK13768 GTPase; Provisional
Probab=95.86 E-value=0.014 Score=52.05 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=23.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.++.|.|.||+||||++..+.......
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc
Confidence 578999999999999999999876554
No 363
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.86 E-value=0.011 Score=48.41 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=25.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCC-CCceE
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKISSN-FEGSC 82 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~ 82 (352)
+++|+|..|+|||||+.++...++.+ +...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~v 32 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVAT 32 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 57899999999999999999987655 44333
No 364
>PRK14531 adenylate kinase; Provisional
Probab=95.86 E-value=0.0084 Score=50.60 Aligned_cols=24 Identities=29% Similarity=0.216 Sum_probs=21.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+.|.|.|++|+||||+++.+++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999875
No 365
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.86 E-value=0.0099 Score=54.98 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=34.8
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|.+..++.+.-.+. ..+..-+.+.|.+|+||||+|+.+..-+
T Consensus 9 ~i~Gq~~~~~~l~~~~~--~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 9 AIVGQEEMKQAMVLTAI--DPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HhCCHHHHHHHHHHHHh--ccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 68999999887765332 1223358899999999999999998854
No 366
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.85 E-value=0.028 Score=51.75 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=46.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc----cCCC---------
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN----AILD--------- 117 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~~~~--------- 117 (352)
..++|.|..|+|||||.+.++..... +.+++.. ++ .....+..+....+..-+.... ...+
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~~--~~~vi~~-iG---er~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTTA--DVNVIAL-IG---ERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCCC--CEEEEEE-Ee---cCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 57899999999999999988875432 2222222 21 1114455555555433221111 0011
Q ss_pred -------HHHHHHHhCCCcEEEEEeCCCCh
Q 036788 118 -------IALSFRRLSSRKFLIVLDDETCF 140 (352)
Q Consensus 118 -------~~~l~~~l~~k~~LlVlDdv~~~ 140 (352)
++.++. +++.+|+++||+...
T Consensus 144 ~~~a~~~AEyfr~--~g~~Vll~~Dsltr~ 171 (326)
T cd01136 144 AYTATAIAEYFRD--QGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHH--cCCCeEEEeccchHH
Confidence 333333 589999999998644
No 367
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.85 E-value=0.0082 Score=49.76 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+|+|.|.+|+||||+|+.++++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999875
No 368
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.85 E-value=0.032 Score=52.31 Aligned_cols=35 Identities=23% Similarity=0.162 Sum_probs=29.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh--hCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI--SSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~--~~~f~~~~~~~ 85 (352)
+++.|.|.||+|||.||..++.++ ........+++
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 478999999999999999999998 55566666665
No 369
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.85 E-value=0.05 Score=45.22 Aligned_cols=77 Identities=9% Similarity=-0.047 Sum_probs=43.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccccCC--C-HHHHHHHhCC--
Q 036788 53 LGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAIL--D-IALSFRRLSS-- 127 (352)
Q Consensus 53 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~--~-~~~l~~~l~~-- 127 (352)
+.|.|.+|+|||++|.+++.. .....+|+. . ... .+ .++...+.+.......... + ...+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a-t---~~~-~d-~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIA-T---AEA-FD-DEMAERIARHRKRRPAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEE-c---cCc-CC-HHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC
Confidence 679999999999999999876 223555664 1 111 32 3455555443332222221 2 3344444421
Q ss_pred CcEEEEEeCCC
Q 036788 128 RKFLIVLDDET 138 (352)
Q Consensus 128 k~~LlVlDdv~ 138 (352)
+.-.+++|.+.
T Consensus 73 ~~~~VLIDclt 83 (169)
T cd00544 73 PGDVVLIDCLT 83 (169)
T ss_pred CCCEEEEEcHh
Confidence 23378889873
No 370
>PRK14532 adenylate kinase; Provisional
Probab=95.84 E-value=0.0075 Score=51.05 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 036788 53 LGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 53 v~I~G~gGiGKTtLa~~~~~~~ 74 (352)
|.|.|++|+||||+|+.++++.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7789999999999999999765
No 371
>PRK05922 type III secretion system ATPase; Validated
Probab=95.84 E-value=0.044 Score=52.33 Aligned_cols=84 Identities=12% Similarity=0.155 Sum_probs=46.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc----cCCC---------
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN----AILD--------- 117 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~~~~--------- 117 (352)
..++|.|..|+|||||.+.++.+... +.+.+.. +++.. ......+.+.......... ...+
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~~~--d~gvi~l-iGerg---~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGSKS--TINVIAL-IGERG---REVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccCCC--CceEEEE-eCCCC---chHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 46899999999999999988865432 2233322 22111 2234444444332221111 1111
Q ss_pred ---HHHHHHHh--CCCcEEEEEeCCCCh
Q 036788 118 ---IALSFRRL--SSRKFLIVLDDETCF 140 (352)
Q Consensus 118 ---~~~l~~~l--~~k~~LlVlDdv~~~ 140 (352)
+-.+.+++ +++.+|+++||+...
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 22233333 579999999999644
No 372
>PHA02244 ATPase-like protein
Probab=95.84 E-value=0.01 Score=55.18 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=31.6
Q ss_pred CcccchhhHH----HHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVE----EIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~----~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++|...... .+..++.. +. -|.|+|++|+|||+||+++++....
T Consensus 97 ~~ig~sp~~~~~~~ri~r~l~~---~~-PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 97 TKIASNPTFHYETADIAKIVNA---NI-PVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred cccCCCHHHHHHHHHHHHHHhc---CC-CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5777665554 34444442 22 4678999999999999999998643
No 373
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.83 E-value=0.011 Score=52.00 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=30.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeecc
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVR 88 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 88 (352)
..+..|.++||+|+||||+.++++..+...+.. .++.++.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNLD 56 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINLD 56 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeCC
Confidence 346688899999999999999999887666543 3444443
No 374
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.83 E-value=0.012 Score=43.21 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
++.+.|.+|+||||++..++..+..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999998754
No 375
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.81 E-value=0.014 Score=55.44 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=37.5
Q ss_pred CcccchhhHHHHHHHh-------cC---CC--C----CeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 28 QLVEVESRVEEIESLL-------GA---GS--K----DVYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L-------~~---~~--~----~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
.++|.+..++.+...+ .. .. + ....+.++|++|+|||++|+.++..+...|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF 144 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence 7899999998886544 11 11 1 125789999999999999999998765433
No 376
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.81 E-value=0.0079 Score=51.02 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 036788 53 LGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 53 v~I~G~gGiGKTtLa~~~~~~~ 74 (352)
|.|.|++|+||||+|+.++++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999874
No 377
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.81 E-value=0.028 Score=53.82 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
-..++|+|.+|+|||||++.++..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l 188 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARA 188 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999877754
No 378
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.80 E-value=0.046 Score=49.77 Aligned_cols=107 Identities=17% Similarity=0.173 Sum_probs=64.1
Q ss_pred CcccchhhHHHHHHHhcCC--CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHH
Q 036788 28 QLVEVESRVEEIESLLGAG--SKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILL 105 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll 105 (352)
.++|-.++..++..++... .+....+.|+|+.|.|||+|.-....+ .+.|.-...+..+.+.- ..-.-.++.|.
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~---~~dk~al~~I~ 100 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGEL---QTDKIALKGIT 100 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccc---hhhHHHHHHHH
Confidence 7999999999998888621 123456789999999999998877776 33454444443332211 11122344444
Q ss_pred HHHhcccc-------cCCC-HHHHHHHhCC------CcEEEEEeCCC
Q 036788 106 SKLLQEKN-------AILD-IALSFRRLSS------RKFLIVLDDET 138 (352)
Q Consensus 106 ~~l~~~~~-------~~~~-~~~l~~~l~~------k~~LlVlDdv~ 138 (352)
+++..+.. ...+ ...+...|+. -++++|+|+++
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfD 147 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFD 147 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhh
Confidence 44433322 2222 4555555533 36888998886
No 379
>PRK06761 hypothetical protein; Provisional
Probab=95.80 E-value=0.0089 Score=53.80 Aligned_cols=27 Identities=37% Similarity=0.482 Sum_probs=24.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
++|.|.|++|+||||+++.+++.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 579999999999999999999987654
No 380
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.055 Score=47.20 Aligned_cols=46 Identities=22% Similarity=0.438 Sum_probs=34.9
Q ss_pred Cccc-chhhHHHHHHHhcCC-----------CCCeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 28 QLVE-VESRVEEIESLLGAG-----------SKDVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 28 ~~vG-R~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.+|| -+.++++|.+.+... -..++=+.++|++|.|||-||+++++.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh 204 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 204 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh
Confidence 4666 477778887766522 234677889999999999999999965
No 381
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.80 E-value=0.025 Score=43.90 Aligned_cols=32 Identities=31% Similarity=0.389 Sum_probs=24.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 53 LGIWGIGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 53 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
+.+.|.||+||||++..+++.+...-..+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~i 33 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAI 33 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 68999999999999999999876543333333
No 382
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.80 E-value=0.017 Score=47.69 Aligned_cols=32 Identities=28% Similarity=0.306 Sum_probs=26.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKISSNFE 79 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~ 79 (352)
....+|-++|.+|.||||+|.++.+.+....-
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 34578999999999999999999998766543
No 383
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.79 E-value=0.014 Score=51.12 Aligned_cols=38 Identities=13% Similarity=-0.025 Sum_probs=27.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
+.-.++.|.|.+|+||||||.+++.....+-..++|+.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 33459999999999999999887775432324455554
No 384
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.79 E-value=0.0093 Score=51.73 Aligned_cols=26 Identities=38% Similarity=0.486 Sum_probs=22.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.+++|+|.+|+|||||++.++--.+.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 48999999999999999999874443
No 385
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.79 E-value=0.023 Score=48.52 Aligned_cols=39 Identities=23% Similarity=0.350 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 36 VEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 36 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.+.+...+. ++-++..|.|.+|+||||++..+...+...
T Consensus 7 ~~a~~~~l~---~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 7 REAVRAILT---SGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHH---CTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh---cCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 344444554 233688899999999999999988876554
No 386
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.78 E-value=0.025 Score=53.99 Aligned_cols=85 Identities=18% Similarity=0.208 Sum_probs=48.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc----cCCC--------
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN----AILD-------- 117 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~~~~-------- 117 (352)
-..++|.|..|+|||||...++..... +..++. .+++-. ..+.++.+..+..-+.... ...+
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~~--dv~V~~-liGERg---rEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAEV--DVTVLA-LIGERG---REVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCCC--CEEEEE-EEccCc---HHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 358999999999999999999876543 333333 233221 3344544443332111111 1111
Q ss_pred ----HHHHHHHh--CCCcEEEEEeCCCCh
Q 036788 118 ----IALSFRRL--SSRKFLIVLDDETCF 140 (352)
Q Consensus 118 ----~~~l~~~l--~~k~~LlVlDdv~~~ 140 (352)
.-.+.+++ +++.+|+++|++...
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 12233333 589999999999644
No 387
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=95.77 E-value=0.021 Score=50.20 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=27.9
Q ss_pred EEEEEEcC-CCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGI-GGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~-gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
++|+|+|+ ||+||||++..++.-+...-..++-++
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID 37 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAID 37 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 57899996 799999999999997766555555554
No 388
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.74 E-value=0.013 Score=52.86 Aligned_cols=27 Identities=33% Similarity=0.605 Sum_probs=23.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
+.|+|+|-||+||||++..++..+...
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~ 27 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM 27 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 468999999999999999999876543
No 389
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.72 E-value=0.0097 Score=50.38 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+..++.|+|++|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35789999999999999999998764
No 390
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.72 E-value=0.0085 Score=50.70 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+++|.|++|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999997754
No 391
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.71 E-value=0.018 Score=50.21 Aligned_cols=46 Identities=30% Similarity=0.229 Sum_probs=30.7
Q ss_pred HHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEEe
Q 036788 40 ESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSN-FEGSCCHQ 85 (352)
Q Consensus 40 ~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~ 85 (352)
-+.|..+=..-.++.|.|.+|+|||+|+.+++...... -..++|+.
T Consensus 9 D~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 9 DELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp HHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 34443222345699999999999999999988754333 34566765
No 392
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.71 E-value=0.0093 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.|.|.|++|+||||+|+.++++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999875
No 393
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.68 E-value=0.023 Score=55.56 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 36 VEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 36 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
+..+.+.|..+=..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45666666644455679999999999999999999998655555566664
No 394
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.67 E-value=0.018 Score=48.32 Aligned_cols=36 Identities=17% Similarity=0.345 Sum_probs=31.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
...|.|-|.+|+|||+|..+.+..++++|...+...
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~ 48 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG 48 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence 478999999999999999999999999888665544
No 395
>PLN02348 phosphoribulokinase
Probab=95.65 E-value=0.013 Score=54.81 Aligned_cols=30 Identities=20% Similarity=0.343 Sum_probs=26.4
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 47 SKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 47 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.+.+.+|+|.|.+|+||||+|+.+.+.+..
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 355789999999999999999999998754
No 396
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.64 E-value=0.07 Score=51.44 Aligned_cols=87 Identities=14% Similarity=0.116 Sum_probs=50.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC--CCC-ceEEEeeccccccCCCChHHHHHHHHHHHhcccc----cCCC------
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISS--NFE-GSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN----AILD------ 117 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~--~f~-~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~~~~------ 117 (352)
+.++|.|-.|+|||||+..++++... .+. .++-+..+++-. ..+.++...+...-..... ...+
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERg---rEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITY---EEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccc---hHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 57899999999999999999986532 122 233333333322 3456666666533211111 0111
Q ss_pred ------HHHHHHHhC---CCcEEEEEeCCCCh
Q 036788 118 ------IALSFRRLS---SRKFLIVLDDETCF 140 (352)
Q Consensus 118 ------~~~l~~~l~---~k~~LlVlDdv~~~ 140 (352)
.-.+.++++ ++++||++||+...
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 233455544 78999999999644
No 397
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.64 E-value=0.011 Score=54.05 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=21.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+|.+.|.+|+||||+|+.+.++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999998875
No 398
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.63 E-value=0.017 Score=53.51 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=35.4
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+||.++.+..+.-.+. +++..-+.|.|.+|+|||||++.+..-+
T Consensus 5 ~ivgq~~~~~al~~~~~--~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVI--DPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccHHHHHHHHHHHhc--CCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 68999999888765554 2334457799999999999999998754
No 399
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.63 E-value=0.013 Score=51.69 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=22.3
Q ss_pred EEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccc
Q 036788 55 IWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVRE 89 (352)
Q Consensus 55 I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~ 89 (352)
|.|++|+||||+++.+.+-....-.. +.+.|+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~-~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRD-VYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S--EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCC-ceEEEcch
Confidence 68999999999999999976554322 34444543
No 400
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.027 Score=56.82 Aligned_cols=47 Identities=28% Similarity=0.312 Sum_probs=34.1
Q ss_pred CcccchhhHHHHHH---HhcCC-------CCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIES---LLGAG-------SKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~---~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
++.|.++..++|.+ +|... .--++=+.++|+||+|||-||++++-+.
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA 368 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 368 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc
Confidence 68887776665555 45421 1125678899999999999999999764
No 401
>PRK12338 hypothetical protein; Provisional
Probab=95.60 E-value=0.012 Score=53.80 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+.+|.|.|.+|+||||+|..++.+.
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999875
No 402
>PRK13695 putative NTPase; Provisional
Probab=95.57 E-value=0.016 Score=48.33 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|+|.+|+|||||++.+++.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988765
No 403
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.57 E-value=0.41 Score=44.06 Aligned_cols=39 Identities=28% Similarity=0.385 Sum_probs=28.5
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 35 RVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 35 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
..+.+...+..+ .-...+.++|+.|+||+++|..+++.+
T Consensus 12 ~~~~l~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~L 50 (319)
T PRK08769 12 AYDQTVAALDAG-RLGHGLLICGPEGLGKRAVALALAEHV 50 (319)
T ss_pred HHHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHH
Confidence 345566655422 224578899999999999999999864
No 404
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.56 E-value=0.028 Score=53.58 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
-..++|.|..|+|||||++.++....
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~ 165 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD 165 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC
Confidence 35789999999999999988886543
No 405
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.56 E-value=0.022 Score=46.83 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=24.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
++++|+|..|+|||||+.++...+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999987654
No 406
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.55 E-value=0.017 Score=48.16 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=22.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++.|.|++|+|||||++++.++.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 578999999999999999999876
No 407
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.018 Score=54.32 Aligned_cols=67 Identities=16% Similarity=0.302 Sum_probs=41.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccccCCCHHHHHHHhCCCc
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILDIALSFRRLSSRK 129 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~ 129 (352)
-|=..++|+||.|||++..++++.+. |+ ++--.+..+..+ .+ ++.++.. ...+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~--yd--IydLeLt~v~~n----~d-Lr~LL~~------------------t~~k 287 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN--YD--IYDLELTEVKLD----SD-LRHLLLA------------------TPNK 287 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC--Cc--eEEeeeccccCc----HH-HHHHHHh------------------CCCC
Confidence 35678999999999999999998653 22 343334444333 22 2333221 2356
Q ss_pred EEEEEeCCCChHHH
Q 036788 130 FLIVLDDETCFKQI 143 (352)
Q Consensus 130 ~LlVlDdv~~~~~~ 143 (352)
-+||+.|++...++
T Consensus 288 SIivIEDIDcs~~l 301 (457)
T KOG0743|consen 288 SILLIEDIDCSFDL 301 (457)
T ss_pred cEEEEeeccccccc
Confidence 67888888866443
No 408
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.54 E-value=0.019 Score=49.65 Aligned_cols=26 Identities=31% Similarity=0.641 Sum_probs=22.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
++|+|.|-||+||||++..++..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~ 26 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAE 26 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHH
Confidence 47899999999999999999987654
No 409
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.037 Score=51.28 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=38.0
Q ss_pred CcccchhhHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGA----------GSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
++.|..+..+-|.+.... ....-+-|.++|+||.|||-||++|+.+-..
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 788888888777765431 1233578889999999999999999988653
No 410
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.53 E-value=0.14 Score=47.43 Aligned_cols=46 Identities=20% Similarity=0.163 Sum_probs=36.0
Q ss_pred Cccc-chhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVE-VESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vG-R~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++| .+...+.+.+.+..+ .-...+.++|+.|+||||+|..+++.+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4677 666777788877632 235677999999999999999999874
No 411
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.53 E-value=0.022 Score=48.57 Aligned_cols=41 Identities=27% Similarity=0.271 Sum_probs=31.2
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
.++|.+.....+.-.... ..-+.+.|.+|+|||++|+.+..
T Consensus 4 dI~GQe~aKrAL~iAAaG----~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAAG----GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CSSSTHHHHHHHHHHHHC----C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHcC----CCCeEEECCCCCCHHHHHHHHHH
Confidence 688988888877665542 24788999999999999999987
No 412
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.53 E-value=0.017 Score=52.80 Aligned_cols=85 Identities=20% Similarity=0.164 Sum_probs=49.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCC-c-eEEEeeccccccCCCChHHHHHHHHHHHhcccccCCC-HHHHHHHhCC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFE-G-SCCHQNVREESRRPGGLGCLQQILLSKLLQEKNAILD-IALSFRRLSS 127 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~-~-~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~-~~~l~~~l~~ 127 (352)
..+.|+|..|+||||++.++.+.+....+ . .+-+.+..+......+... +.. .....+ .+.++..|+.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~--------~~~-~~~~~~~~~~l~~aLR~ 203 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQ--------LRT-SDDAISMTRLLKATLRL 203 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEE--------EEe-cCCCCCHHHHHHHHhcC
Confidence 46779999999999999999988765322 2 2333322111100000000 000 001112 5778888888
Q ss_pred CcEEEEEeCCCChHHHH
Q 036788 128 RKFLIVLDDETCFKQIK 144 (352)
Q Consensus 128 k~~LlVlDdv~~~~~~~ 144 (352)
.+=.||+..+...+.+.
T Consensus 204 ~pD~iivGEiR~~ea~~ 220 (299)
T TIGR02782 204 RPDRIIVGEVRGGEALD 220 (299)
T ss_pred CCCEEEEeccCCHHHHH
Confidence 88889999997665443
No 413
>PRK06851 hypothetical protein; Provisional
Probab=95.52 E-value=0.047 Score=51.04 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=30.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh-hCCCCceEEEe
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI-SSNFEGSCCHQ 85 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~-~~~f~~~~~~~ 85 (352)
.+++.|.|.+|+|||||++.++... ...++..++.+
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC 250 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHC 250 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 4789999999999999999999986 44466666665
No 414
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.51 E-value=0.019 Score=47.11 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=28.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
.++++|+|..|+|||||..++..+++.+--.+.-+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~i 36 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATV 36 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEE
Confidence 46899999999999999999999887664333333
No 415
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.51 E-value=0.02 Score=46.57 Aligned_cols=26 Identities=31% Similarity=0.631 Sum_probs=22.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
++++.|.+|+||||++..+.......
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~ 26 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRAR 26 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 37899999999999999999876544
No 416
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.50 E-value=0.012 Score=50.90 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 036788 53 LGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 53 v~I~G~gGiGKTtLa~~~~~~~ 74 (352)
|.|.|++|+||||+|+.++++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998764
No 417
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.027 Score=49.13 Aligned_cols=50 Identities=20% Similarity=0.354 Sum_probs=37.0
Q ss_pred CcccchhhHHHHHHHhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLGA-----------GSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
++=|.+-+.+++.+.... +-+.++=|.++|++|+|||-||+++++.-...
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~ 216 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA 216 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh
Confidence 455677777777665431 22557788899999999999999999875543
No 418
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.48 E-value=0.034 Score=48.50 Aligned_cols=47 Identities=23% Similarity=0.252 Sum_probs=32.1
Q ss_pred HHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 39 IESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 39 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
+-+.|..+=..-.++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 33444333334578999999999999999999886433434555654
No 419
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.48 E-value=0.013 Score=49.05 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+++|+|.+|+||||+++.++....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998754
No 420
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.46 E-value=0.014 Score=50.62 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.|.|.|++|+||||+|+.++++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998753
No 421
>PRK08356 hypothetical protein; Provisional
Probab=95.46 E-value=0.014 Score=49.68 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.3
Q ss_pred EEEEEEcCCCchHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIF 71 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~ 71 (352)
.+|+|+|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999994
No 422
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.46 E-value=0.014 Score=49.97 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
..+|+|+|+.|+||||.|+.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 35899999999999999998775
No 423
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.46 E-value=0.12 Score=49.41 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
..+++++|..|+||||++..++.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999998753
No 424
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.45 E-value=0.015 Score=44.30 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=19.5
Q ss_pred EEEEEEcCCCchHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIF 71 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~ 71 (352)
..++|.|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 588999999999999999976
No 425
>PRK01184 hypothetical protein; Provisional
Probab=95.45 E-value=0.013 Score=49.28 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=18.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.+|+|+|++|+||||+|+ ++++
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 478999999999999987 4443
No 426
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.44 E-value=0.048 Score=51.95 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..++|.|..|+|||||+..+.....
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~~~ 162 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARYTE 162 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999988886543
No 427
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.019 Score=51.12 Aligned_cols=51 Identities=27% Similarity=0.420 Sum_probs=38.6
Q ss_pred CcccchhhHHHHHHHhcCCC-----------CCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 28 QLVEVESRVEEIESLLGAGS-----------KDVYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~-----------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
++=|-+.++++|.+-....- ..++=|.++|.||.|||-||++++++-...|
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 56678888888888655211 2356678999999999999999998755443
No 428
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.43 E-value=0.022 Score=51.52 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=23.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
++++|+|-||+||||+|..++..+...
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~ 28 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAES 28 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhC
Confidence 478899999999999999999976544
No 429
>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=95.43 E-value=0.037 Score=49.72 Aligned_cols=127 Identities=21% Similarity=0.269 Sum_probs=69.6
Q ss_pred CcccchhhHHHHHHHhc-----CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC-CCCceEEEeeccccccCCCChHHHH
Q 036788 28 QLVEVESRVEEIESLLG-----AGSKDVYALGIWGIGGIGKTTIARAIFDKISS-NFEGSCCHQNVREESRRPGGLGCLQ 101 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~s~~~~~~~~l~ 101 (352)
.|+....+.+-+..-+. ..-..-.-|+++|-+|+|||.|..++.+.+.. |-...+|.- +++-... -.++.
T Consensus 164 ~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGGAGVGKTVlImELINNiAKaHGGySVF~G-vGERTRE---GNDLY 239 (521)
T KOG1350|consen 164 EFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAG-VGERTRE---GNDLY 239 (521)
T ss_pred hHhhhcccHHHHhhcceeeeeecccccCCeeeeeccCCccceeeHHHHHHHHHHhcCCeEEeec-ccccccc---ccHHH
Confidence 46665555554443221 11123357899999999999999999997644 434445543 4433222 23444
Q ss_pred HHHHHHH----hcccc-------cCCC--------------HHHHHHHhCCCcEEEEEeCCCChHHHHHhhccCCchhHH
Q 036788 102 QILLSKL----LQEKN-------AILD--------------IALSFRRLSSRKFLIVLDDETCFKQIKSLIGSHGFEELS 156 (352)
Q Consensus 102 ~~ll~~l----~~~~~-------~~~~--------------~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~ 156 (352)
.++...- ..... ++.+ .....+-..+..+||.+||+.. +.+.+
T Consensus 240 ~EM~E~gVI~l~~~~SKvaLV~GQMNePPGARaRV~LTgLTvAEYFRD~egQDVLLFIDNIFR------------FtQAG 307 (521)
T KOG1350|consen 240 HEMIESGVINLEGETSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR------------FTQAG 307 (521)
T ss_pred HHHHhcCeeeccCCcceEEEEeeccCCCCCceeeeeeecccHHHHhhccccceEEEeehhhhh------------hhccc
Confidence 5554321 00000 0111 3444444567899999999863 33444
Q ss_pred HHHHHHhcCCchhH
Q 036788 157 SRVIKYAQGVPLAI 170 (352)
Q Consensus 157 ~~i~~~~~glPLal 170 (352)
.++...+|.+|-|+
T Consensus 308 SEVSALLGRiPSAV 321 (521)
T KOG1350|consen 308 SEVSALLGRIPSAV 321 (521)
T ss_pred hHHHHHhccCcccc
Confidence 44555556666544
No 430
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=95.42 E-value=0.066 Score=51.85 Aligned_cols=86 Identities=20% Similarity=0.108 Sum_probs=48.6
Q ss_pred eEEEEEEcCCCchHHHHHH-HHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc----cCCC-------
Q 036788 50 VYALGIWGIGGIGKTTIAR-AIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN----AILD------- 117 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~-~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~~~~------- 117 (352)
-+.++|.|.+|+||||||. .+.++.. -+..+-+..+++-. ..+.++.+.+...-..... ...+
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~q~~--~dv~~V~~~IGeR~---rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~ 236 (497)
T TIGR03324 162 GQRELILGDRQTGKTAIAIDTILNQKG--RNVLCIYCAIGQRA---SAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY 236 (497)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHHhcC--CCcEEEEEEeccCc---HHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHH
Confidence 3578999999999999974 6776532 34423333343321 3355566655543211111 0111
Q ss_pred -----HHHHHHHh--CCCcEEEEEeCCCCh
Q 036788 118 -----IALSFRRL--SSRKFLIVLDDETCF 140 (352)
Q Consensus 118 -----~~~l~~~l--~~k~~LlVlDdv~~~ 140 (352)
...+.+++ +++.+|||+||+...
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 237 IAPYAATSIGEHFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcChhHH
Confidence 22233333 579999999999644
No 431
>PRK14528 adenylate kinase; Provisional
Probab=95.42 E-value=0.015 Score=49.16 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+.+.|.|++|+||||+|+.+++..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998775
No 432
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.42 E-value=0.034 Score=52.32 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=28.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
....+.|.|.||+|||+|.+++.+.++..-..++..
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~ 56 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVT 56 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEe
Confidence 346789999999999999999999887654444333
No 433
>PRK02496 adk adenylate kinase; Provisional
Probab=95.42 E-value=0.016 Score=48.79 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+.|.|++|+||||+|+.++...
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 434
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.41 E-value=0.11 Score=48.14 Aligned_cols=33 Identities=21% Similarity=0.055 Sum_probs=25.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
+.++|.|..|+|||+|+++++++.. -+.++++.
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~~--~dvvVyv~ 190 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYSN--SDIVIYVG 190 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCCC--CCEEEEEE
Confidence 4889999999999999999988632 23455554
No 435
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.39 E-value=0.012 Score=49.43 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036788 52 ALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~ 72 (352)
+|+|+|.+|+||||++..+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999886
No 436
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.38 E-value=0.015 Score=53.88 Aligned_cols=46 Identities=20% Similarity=0.101 Sum_probs=37.3
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.++|+...++++.+.+..-.....-|.|+|.+|+||+++|+.++..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 6999999999998877633333346789999999999999998864
No 437
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.38 E-value=0.013 Score=47.58 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=18.6
Q ss_pred EEcCCCchHHHHHHHHHHHh
Q 036788 55 IWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 55 I~G~gGiGKTtLa~~~~~~~ 74 (352)
|.|+||+||||+|+.++++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999975
No 438
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.38 E-value=0.014 Score=49.23 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=24.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFE 79 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~ 79 (352)
+.+.|+|++|+|||||+..+.+.....|.
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~ 31 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFE 31 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceE
Confidence 57899999999999999999887543443
No 439
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.37 E-value=0.07 Score=46.95 Aligned_cols=51 Identities=22% Similarity=0.059 Sum_probs=35.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEEeeccccccCCCChHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSN-FEGSCCHQNVREESRRPGGLGCLQQILLSK 107 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~ 107 (352)
-.++.|.|.+|+|||+++.+++...... -..++|+. .. .+...+...++..
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s------~E-~~~~~~~~r~~~~ 64 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS------LE-MSKEQLLQRLLAS 64 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe------CC-CCHHHHHHHHHHH
Confidence 4689999999999999999998875443 33555654 22 4456666666543
No 440
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.37 E-value=0.022 Score=50.67 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
+|+|.|.+|+||||++.++.+.++..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999876543
No 441
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=95.36 E-value=0.059 Score=51.95 Aligned_cols=86 Identities=20% Similarity=0.143 Sum_probs=47.9
Q ss_pred eEEEEEEcCCCchHHHHHHH-HHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc----cCCC-------
Q 036788 50 VYALGIWGIGGIGKTTIARA-IFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN----AILD------- 117 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~-~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~~~~------- 117 (352)
-+.++|.|.+|+|||+||.. +.++. .-+..|.+..+++-. ..+.++.+.+...-..... ...+
T Consensus 141 GQR~~I~g~~g~GKt~Lal~~I~~q~--~~dv~cV~~~IGer~---rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~ 215 (485)
T CHL00059 141 GQRELIIGDRQTGKTAVATDTILNQK--GQNVICVYVAIGQKA---SSVAQVVTTLQERGAMEYTIVVAETADSPATLQY 215 (485)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHhcc--cCCeEEEEEEecCCc---hHHHHHHHHhhcccchhceEEEEeCCCCCHHHHH
Confidence 35789999999999999664 44442 234454444444322 3455666655533111111 0111
Q ss_pred -----HHHHHHHh--CCCcEEEEEeCCCCh
Q 036788 118 -----IALSFRRL--SSRKFLIVLDDETCF 140 (352)
Q Consensus 118 -----~~~l~~~l--~~k~~LlVlDdv~~~ 140 (352)
.-.+.+++ +++.+|+|+||+...
T Consensus 216 ~ap~~a~aiAEyfr~~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 216 LAPYTGAALAEYFMYRGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHHHHhhHHHHHHHcCCCEEEEEcChhHH
Confidence 11222222 578999999999644
No 442
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.36 E-value=0.051 Score=46.44 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=23.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.+|+|.|+.|+||||+++.+.+.+..
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999997654
No 443
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.36 E-value=0.023 Score=52.82 Aligned_cols=45 Identities=24% Similarity=0.228 Sum_probs=36.6
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+||.++.+..|...+. ++...-+.|.|..|+||||+|+.+++-.
T Consensus 18 ~ivGq~~~k~al~~~~~--~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 18 AIVGQEEMKLALILNVI--DPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHhChHHHHHHHHHhcc--CCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 79999988888877665 3445567799999999999999998853
No 444
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.35 E-value=0.043 Score=53.50 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=35.0
Q ss_pred CcccchhhHHHHHHHhc--------CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLG--------AGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~--------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
++-|.+...+.+.+... .+-...+-|.++|++|+|||.+|+++++...-
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~ 285 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL 285 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 57787776666654221 01133567889999999999999999998653
No 445
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.35 E-value=0.039 Score=49.38 Aligned_cols=47 Identities=19% Similarity=0.298 Sum_probs=32.3
Q ss_pred CcccchhhHH----HHHHHhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVE----EIESLLG-AGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~----~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|.--..+ .|...+. ....++-+++.+|.+|+||.-.++.+++..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 3555433333 4444443 234557799999999999999999999853
No 446
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.34 E-value=0.096 Score=50.82 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..+++++|+.|+||||++..++....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 47999999999999999999998753
No 447
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.34 E-value=0.029 Score=47.28 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=23.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..++.|.|.+|+||||+|+.+...+.
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999998765
No 448
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.33 E-value=0.1 Score=50.15 Aligned_cols=85 Identities=14% Similarity=0.180 Sum_probs=46.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc----cCC-C--------
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN----AIL-D-------- 117 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~~~-~-------- 117 (352)
..++|.|..|+|||||++.+..... .+..++.. + ......+..+...+...-..... ... +
T Consensus 169 qrigI~G~sG~GKSTLl~~I~g~~~--~dv~V~g~-I---g~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 169 QRLGLFAGTGVGKSVLLGMMTRFTE--ADIIVVGL-I---GERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC--CCEEEEEE-e---CcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 5789999999999999988875322 12222221 2 21113345555555433221111 111 1
Q ss_pred ---HHHHHHHh--CCCcEEEEEeCCCChH
Q 036788 118 ---IALSFRRL--SSRKFLIVLDDETCFK 141 (352)
Q Consensus 118 ---~~~l~~~l--~~k~~LlVlDdv~~~~ 141 (352)
+..+.+++ +++.+||++||+....
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~DslTR~A 271 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSLTRFA 271 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecchhHHH
Confidence 22233333 5899999999996543
No 449
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.31 E-value=0.028 Score=46.13 Aligned_cols=36 Identities=25% Similarity=0.489 Sum_probs=29.5
Q ss_pred hhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 33 ESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 33 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
...+++|.++|. + +++++.|..|+|||||...+...
T Consensus 23 ~~g~~~l~~~l~----~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLK----G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHT----T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhc----C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 355778888886 2 68999999999999999988753
No 450
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.31 E-value=0.036 Score=52.77 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
-..++|.|..|+|||||+..++....
T Consensus 137 Gqri~I~G~sG~GKTtLl~~i~~~~~ 162 (413)
T TIGR03497 137 GQRVGIFAGSGVGKSTLLGMIARNAK 162 (413)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999988876543
No 451
>PRK08506 replicative DNA helicase; Provisional
Probab=95.31 E-value=0.11 Score=50.54 Aligned_cols=71 Identities=17% Similarity=0.072 Sum_probs=44.0
Q ss_pred cchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHh
Q 036788 31 EVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLL 109 (352)
Q Consensus 31 GR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~ 109 (352)
|...-...|-+++. +-..-.++.|-|.||+|||++|..++.....+-..++|+. .. -+..++...++....
T Consensus 174 Gi~TG~~~LD~~~~-G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS------lE-Ms~~ql~~Rlla~~s 244 (472)
T PRK08506 174 GLDTGFVELNKMTK-GFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS------LE-MPAEQLMLRMLSAKT 244 (472)
T ss_pred cccCChHHHHhhcC-CCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe------Cc-CCHHHHHHHHHHHhc
Confidence 33334444444332 2223458889999999999999999987643322344443 33 556777777776544
No 452
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.29 E-value=0.031 Score=51.03 Aligned_cols=30 Identities=23% Similarity=0.583 Sum_probs=25.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
+..+++++.|-||+||||+|..++..+...
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~~ 33 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEM 33 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHHHHC
Confidence 456899999999999999999999876554
No 453
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.28 E-value=0.023 Score=53.60 Aligned_cols=31 Identities=29% Similarity=0.593 Sum_probs=26.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCC
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSNFE 79 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~ 79 (352)
+..+|+|+|..|+|||||+..+...++.++.
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~~~ 34 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSERFS 34 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhCce
Confidence 3569999999999999999999998876643
No 454
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.27 E-value=0.025 Score=50.82 Aligned_cols=108 Identities=20% Similarity=0.164 Sum_probs=59.1
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHH
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSK 107 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~ 107 (352)
.+.-.....+.+.++|...-.....+.|.|..|+||||++..+.+.+...-...+-+.+..+. .+.. . ..
T Consensus 105 ~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~-----~l~~----~-~~ 174 (270)
T PF00437_consen 105 DLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL-----RLPG----P-NQ 174 (270)
T ss_dssp CCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-------SC----S-SE
T ss_pred hccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce-----eecc----c-ce
Confidence 444444455666666653323357899999999999999999998776651222333321111 0100 0 00
Q ss_pred Hhccc-ccCCC-HHHHHHHhCCCcEEEEEeCCCChHHHHH
Q 036788 108 LLQEK-NAILD-IALSFRRLSSRKFLIVLDDETCFKQIKS 145 (352)
Q Consensus 108 l~~~~-~~~~~-~~~l~~~l~~k~~LlVlDdv~~~~~~~~ 145 (352)
..... ....+ .+.+...|+..+=.++++++.+.+....
T Consensus 175 ~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~ 214 (270)
T PF00437_consen 175 IQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEA 214 (270)
T ss_dssp EEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHH
T ss_pred EEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHH
Confidence 00000 00111 6777888888888899999976655443
No 455
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.27 E-value=0.024 Score=52.11 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
....|+|+|++|+||||+++.+++.+.
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg 158 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLG 158 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999998763
No 456
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.26 E-value=0.033 Score=49.90 Aligned_cols=26 Identities=31% Similarity=0.635 Sum_probs=22.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
++|+|.|-||+||||++..++..+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~ 27 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAE 27 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHh
Confidence 46788899999999999999997654
No 457
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.26 E-value=0.026 Score=48.37 Aligned_cols=53 Identities=15% Similarity=0.060 Sum_probs=33.4
Q ss_pred cchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH-h-hCCCCceEEEeec
Q 036788 31 EVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDK-I-SSNFEGSCCHQNV 87 (352)
Q Consensus 31 GR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~-~-~~~f~~~~~~~~~ 87 (352)
.+..+-....+.|. ...++.+.|++|+|||.||.+.+-+ + ...|+..++....
T Consensus 4 p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~ 58 (205)
T PF02562_consen 4 PKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPP 58 (205)
T ss_dssp --SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S
T ss_pred CCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 34455555566555 2358999999999999999998864 3 4567777776543
No 458
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.22 E-value=0.051 Score=53.95 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=38.6
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|....++++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus 197 ~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 197 GIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 79999999999988776333333467799999999999999999864
No 459
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.21 E-value=0.088 Score=50.42 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
-+.++|.|-+|+|||||+..++++..
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~ 166 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAG 166 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhc
Confidence 35789999999999999999998754
No 460
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.21 E-value=0.015 Score=49.14 Aligned_cols=85 Identities=18% Similarity=0.117 Sum_probs=47.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc--c-C--CC-HHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN--A-I--LD-IALSFRR 124 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~--~-~--~~-~~~l~~~ 124 (352)
..++|.|..|+||||+++.+...+.... ..+.+.+..+.... . .... ++..... . . .+ .+.++..
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~-~~i~ied~~E~~~~-~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDE-RIITIEDTAELQLP-H------PNWV-RLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCC-CEEEECCccccCCC-C------CCEE-EEEEecCCCCCCCccCHHHHHHHH
Confidence 5899999999999999999988765322 22333221111000 0 0000 0000000 0 0 11 5666777
Q ss_pred hCCCcEEEEEeCCCChHHHH
Q 036788 125 LSSRKFLIVLDDETCFKQIK 144 (352)
Q Consensus 125 l~~k~~LlVlDdv~~~~~~~ 144 (352)
++..+=.++++.+.+.+.+.
T Consensus 97 lR~~pd~i~igEir~~ea~~ 116 (186)
T cd01130 97 LRMRPDRIIVGEVRGGEALD 116 (186)
T ss_pred hccCCCEEEEEccCcHHHHH
Confidence 77788888999998665443
No 461
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=95.19 E-value=0.036 Score=49.41 Aligned_cols=52 Identities=27% Similarity=0.272 Sum_probs=39.5
Q ss_pred CcccchhhHHH---HHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC
Q 036788 28 QLVEVESRVEE---IESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFE 79 (352)
Q Consensus 28 ~~vGR~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~ 79 (352)
.|||.+...+. +.+++....=.-+.+.+-|++|.|||+||..+.+.+...-+
T Consensus 39 g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqELG~kvP 93 (456)
T KOG1942|consen 39 GFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQELGPKVP 93 (456)
T ss_pred ccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHHHHHHhCCCCC
Confidence 79998776653 55555533323468889999999999999999999876644
No 462
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=95.19 E-value=0.095 Score=51.12 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=47.7
Q ss_pred eEEEEEEcCCCchHHHHH-HHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc----cCCC-------
Q 036788 50 VYALGIWGIGGIGKTTIA-RAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN----AILD------- 117 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa-~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~~~~------- 117 (352)
-+.++|.|.+|+|||+|| ..++++. .-+..|-+..+++-. ..+.++.+.+...-..... ...+
T Consensus 161 GQr~~I~g~~g~GKt~Lal~~i~~~~--~~dv~~V~~~IGer~---rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~ 235 (501)
T TIGR00962 161 GQRELIIGDRQTGKTAVAIDTIINQK--DSDVYCVYVAIGQKA---STVAQVVRKLEEHGAMDYTIVVAATASDSASLQY 235 (501)
T ss_pred CCEEEeecCCCCCccHHHHHHHHhhc--CCCeEEEEEEccCCh---HHHHHHHHHHHhcCccceeEEEEecCCCCHHHHH
Confidence 357899999999999996 4555543 334543333343322 3355666665543211111 0111
Q ss_pred -----HHHHHHHh--CCCcEEEEEeCCCCh
Q 036788 118 -----IALSFRRL--SSRKFLIVLDDETCF 140 (352)
Q Consensus 118 -----~~~l~~~l--~~k~~LlVlDdv~~~ 140 (352)
.-.+.+++ +++.+|||+||+...
T Consensus 236 ~a~~~a~aiAEyfrd~G~~VLlv~Ddltr~ 265 (501)
T TIGR00962 236 LAPYTGCTMAEYFRDNGKHALIIYDDLSKH 265 (501)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecchHHH
Confidence 12222222 478999999999644
No 463
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=95.18 E-value=0.23 Score=47.35 Aligned_cols=82 Identities=20% Similarity=0.088 Sum_probs=52.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCc-eEEEeeccccccCCCChHHHHHHHHHHHhcccc-cCCC----------
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEG-SCCHQNVREESRRPGGLGCLQQILLSKLLQEKN-AILD---------- 117 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~-~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-~~~~---------- 117 (352)
-..+.+-|-||+||||+|..++..+...++. +.++ |.. -+..++...++.....-.. .+..
T Consensus 196 ~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iF------SLE-M~~eql~~R~Ls~~s~v~~~kirtg~l~~~d~~~ 268 (435)
T COG0305 196 GDLIIVAARPGMGKTALALNIALNAAADGRKPVAIF------SLE-MSEEQLVMRLLSSESGIESSKLRTGRLSDDEWER 268 (435)
T ss_pred CCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEE------Ecc-CCHHHHHHHhhccccccchhccccccccHHHHHH
Confidence 3588888999999999999999987665543 3333 333 5667787777766554433 2211
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCh
Q 036788 118 IALSFRRLSSRKFLIVLDDETCF 140 (352)
Q Consensus 118 ~~~l~~~l~~k~~LlVlDdv~~~ 140 (352)
.......+...+ |.+||....
T Consensus 269 l~~a~~~l~~~~--i~IdD~~~~ 289 (435)
T COG0305 269 LIKAASELSEAP--IFIDDTPGL 289 (435)
T ss_pred HHHHHHHHhhCC--eeecCCCcC
Confidence 222333445555 777887644
No 464
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.18 E-value=0.02 Score=49.66 Aligned_cols=25 Identities=36% Similarity=0.609 Sum_probs=22.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+|+|.|+.|+||||+|+.++.++.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998764
No 465
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.16 E-value=0.017 Score=47.13 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036788 52 ALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
-|+++|.+|+|||||+.++.+.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999863
No 466
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.16 E-value=0.038 Score=54.14 Aligned_cols=47 Identities=17% Similarity=0.088 Sum_probs=32.7
Q ss_pred HHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH-hhCCCCceEEEe
Q 036788 39 IESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDK-ISSNFEGSCCHQ 85 (352)
Q Consensus 39 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~-~~~~f~~~~~~~ 85 (352)
+-+.|..+=..-+++.|.|.+|+||||||.+++.. +++.-..++|+.
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs 57 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVT 57 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 33444433345679999999999999999999775 343234666665
No 467
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.16 E-value=0.022 Score=49.91 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=37.6
Q ss_pred CcccchhhHHH---HHHHhcCC----CCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEE---IESLLGAG----SKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~---l~~~L~~~----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
++||.+..... |.+.|... .-.++-|..+|++|.|||-+|+++++..+.
T Consensus 122 dViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv 177 (368)
T COG1223 122 DVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV 177 (368)
T ss_pred hhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC
Confidence 78998887754 55566521 223788999999999999999999987653
No 468
>PLN02165 adenylate isopentenyltransferase
Probab=95.16 E-value=0.02 Score=52.55 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.-.+++|.|+.|+||||||..++..+.
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 345899999999999999999998864
No 469
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.14 E-value=0.35 Score=49.48 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
..+++++|+.|+||||++..++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4799999999999999999999865
No 470
>PLN02924 thymidylate kinase
Probab=95.12 E-value=0.12 Score=44.86 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=25.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
-..|+|.|..|+||||++..+++.+...
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~ 43 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGL 43 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999987655
No 471
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.12 E-value=0.066 Score=51.15 Aligned_cols=85 Identities=21% Similarity=0.240 Sum_probs=47.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc----cCCC--------
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN----AILD-------- 117 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~~~~-------- 117 (352)
-..++|.|..|+|||||+..++....... ..+.. +++ .. ....++....+..-+.... ...+
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~-gvI~~--iGe--rg-~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~r 229 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKADI-NVISL--VGE--RG-REVKDFIRKELGEEGMRKSVVVVATSDESHLMQLR 229 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCCCe-EEEEe--CCC--Cc-ccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHH
Confidence 35789999999999999998887653321 22222 111 11 3445555544433221111 0111
Q ss_pred ----HHHHHHHh--CCCcEEEEEeCCCCh
Q 036788 118 ----IALSFRRL--SSRKFLIVLDDETCF 140 (352)
Q Consensus 118 ----~~~l~~~l--~~k~~LlVlDdv~~~ 140 (352)
+..+.+++ +++++||++||....
T Consensus 230 a~~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 230 AAKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 22222333 478999999999644
No 472
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.12 E-value=0.031 Score=50.13 Aligned_cols=26 Identities=31% Similarity=0.620 Sum_probs=22.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
+|+|.|-||+||||+|..++..+..+
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~ 27 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKR 27 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHC
Confidence 57888999999999999999976654
No 473
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.11 E-value=0.018 Score=54.80 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
-++.|+|+|.+|+|||||+.++++..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36799999999999999999999764
No 474
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.10 E-value=0.036 Score=47.48 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=24.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFE 79 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~ 79 (352)
..++|.|..|+|||||.+.+.+.+...+.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~~~~ 30 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQKYQ 30 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCcCCc
Confidence 36899999999999999999988765433
No 475
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.09 E-value=0.022 Score=48.57 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.+|+|-|++|+||+|+|+.++.++.-
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~ 30 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGF 30 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCC
Confidence 58999999999999999999998754
No 476
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.08 E-value=0.023 Score=44.38 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
-.+|.+.|.=|+||||+++.+++.+
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc
Confidence 3699999999999999999999964
No 477
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.07 E-value=0.21 Score=44.50 Aligned_cols=54 Identities=22% Similarity=0.006 Sum_probs=38.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEEeeccccccCCCChHHHHHHHHHHHhcc
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSN-FEGSCCHQNVREESRRPGGLGCLQQILLSKLLQE 111 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~ 111 (352)
.++.|-|.+|+|||++|..++..+... -..+.|++ .. -+..++...++.....-
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~S------lE-m~~~~l~~R~la~~s~v 74 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFS------LE-MSEEELAARLLARLSGV 74 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEE------SS-S-HHHHHHHHHHHHHTS
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEc------CC-CCHHHHHHHHHHHhhcc
Confidence 488899999999999999999976543 24555554 23 55677777777666544
No 478
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.033 Score=54.89 Aligned_cols=51 Identities=24% Similarity=0.359 Sum_probs=37.4
Q ss_pred CcccchhhHHHHHHHhc-----------CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 28 QLVEVESRVEEIESLLG-----------AGSKDVYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
++=|.++...+|.+... -+-+.++-|.++|+||+|||++|+++++..+-.|
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nF 496 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNF 496 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCe
Confidence 34447766666765433 1224577889999999999999999999876665
No 479
>PRK07429 phosphoribulokinase; Provisional
Probab=95.06 E-value=0.037 Score=51.12 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=25.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
..+-+|+|.|.+|+||||+++.+...+...
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~ 35 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEE 35 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccC
Confidence 456799999999999999999999876543
No 480
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.06 E-value=0.017 Score=45.87 Aligned_cols=25 Identities=28% Similarity=0.423 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+++|+|..|+|||||.+.++....
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 4899999999999999998887543
No 481
>PRK08840 replicative DNA helicase; Provisional
Probab=95.06 E-value=0.13 Score=49.97 Aligned_cols=54 Identities=17% Similarity=0.056 Sum_probs=37.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh-CCCCceEEEeeccccccCCCChHHHHHHHHHHHhc
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS-SNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQ 110 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~ 110 (352)
-.++.|-|.||+|||++|..++.... .+-..++|+ |.. -+..++...++.....
T Consensus 217 g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~f------SlE-Ms~~ql~~Rlla~~s~ 271 (464)
T PRK08840 217 SDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIF------SLE-MPAEQLMMRMLASLSR 271 (464)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEE------ecc-CCHHHHHHHHHHhhCC
Confidence 45888999999999999999988753 222223333 333 5677888888766543
No 482
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.05 E-value=0.022 Score=52.73 Aligned_cols=46 Identities=20% Similarity=0.090 Sum_probs=35.2
Q ss_pred cccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 29 LVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 29 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
++|....++++.+.+..-.....-|.|+|.+|+||+++|+.+++.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4788888888777766333333467899999999999999998753
No 483
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.05 E-value=0.032 Score=50.26 Aligned_cols=27 Identities=33% Similarity=0.621 Sum_probs=22.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
++|+|+|-||+||||+|..++..+...
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~ 28 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTM 28 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhh
Confidence 478888999999999999999876543
No 484
>PRK10646 ADP-binding protein; Provisional
Probab=95.05 E-value=0.039 Score=44.85 Aligned_cols=42 Identities=19% Similarity=0.348 Sum_probs=29.6
Q ss_pred hhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 33 ESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 33 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+++..++-+.|...-..-.+|.+.|-=|+||||+++.+++.+
T Consensus 11 ~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 11 EQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 344555555554211223489999999999999999999964
No 485
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.01 E-value=0.023 Score=51.46 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+-+|.|.|.+|+||||+|..+++++
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34688999999999999999999887
No 486
>PLN02459 probable adenylate kinase
Probab=95.01 E-value=0.09 Score=46.74 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+.|.|+||+||||+|..+++..
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~ 53 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLL 53 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46778999999999999999875
No 487
>PRK06904 replicative DNA helicase; Validated
Probab=95.01 E-value=0.14 Score=49.84 Aligned_cols=54 Identities=15% Similarity=0.041 Sum_probs=37.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEEeeccccccCCCChHHHHHHHHHHHhc
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSN-FEGSCCHQNVREESRRPGGLGCLQQILLSKLLQ 110 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~ 110 (352)
-.++.|-|.||+|||++|..++..+... -..++|+ |.. -+..++...++.....
T Consensus 221 G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~f------SlE-Ms~~ql~~Rlla~~s~ 275 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVF------SLE-MPAEQIMMRMLASLSR 275 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEE------ecc-CCHHHHHHHHHHhhCC
Confidence 3588899999999999999998865322 2233443 333 5677888888766543
No 488
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=94.99 E-value=0.47 Score=42.88 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=26.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH-H-hhCCCCceEEEe
Q 036788 50 VYALGIWGIGGIGKTTIARAIFD-K-ISSNFEGSCCHQ 85 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~-~-~~~~f~~~~~~~ 85 (352)
+-+..|+|+.|.||++|.+.+.. + +.---+.++|++
T Consensus 87 P~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFIt 124 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFIT 124 (369)
T ss_pred ceEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEEC
Confidence 44667899999999999998876 2 333345666664
No 489
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=94.99 E-value=0.021 Score=46.77 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036788 52 ALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~ 72 (352)
-|+|.|.+|+|||||+.++.+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 377999999999999999886
No 490
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.99 E-value=0.017 Score=49.85 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.-|+|+|.+|+|||||+.++.+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 46889999999999999999985
No 491
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=94.98 E-value=0.02 Score=46.79 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036788 53 LGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 53 v~I~G~gGiGKTtLa~~~~~~ 73 (352)
|+++|.+|+|||||+.++..+
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999874
No 492
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=94.96 E-value=0.036 Score=49.99 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=22.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
++|+|.|-||+||||+|..++..+..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~ 28 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAY 28 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 58888899999999999999987764
No 493
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=94.96 E-value=0.16 Score=50.18 Aligned_cols=48 Identities=15% Similarity=0.008 Sum_probs=31.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQIL 104 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~l 104 (352)
..++|.|..|+|||+|+.++++... -+.++++- +++-. ..+.+++.++
T Consensus 228 q~~~Ipg~~G~GKTvl~~~iak~a~--adivVyvg-~GERg---~E~~e~l~ef 275 (586)
T PRK04192 228 GTAAIPGPFGSGKTVTQHQLAKWAD--ADIVIYVG-CGERG---NEMTEVLEEF 275 (586)
T ss_pred CeEEEecCCCCCHHHHHHHHHhcCC--CCEEEEEE-cCcCh---HHHHHHHHHH
Confidence 4689999999999999999887642 24555554 33322 3355555554
No 494
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=94.96 E-value=0.017 Score=50.11 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIF 71 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~ 71 (352)
...+.|+|.+|+||||+|+.+.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4569999999999999999875
No 495
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.96 E-value=0.05 Score=52.15 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
-..++|.|..|+|||||++.++...
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~ 187 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGT 187 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4588999999999999999888654
No 496
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.95 E-value=0.078 Score=50.95 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
-..++|.|..|+|||||++.+.....
T Consensus 158 Gq~i~I~G~sG~GKStLl~~I~~~~~ 183 (438)
T PRK07721 158 GQRVGIFAGSGVGKSTLMGMIARNTS 183 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcccC
Confidence 46899999999999999988887543
No 497
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.95 E-value=0.035 Score=53.02 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
-..++|.|..|+|||||++.++...
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~ 179 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP 179 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC
Confidence 3588999999999999998888654
No 498
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.95 E-value=0.057 Score=44.98 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=27.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh-CCCCceEEE
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS-SNFEGSCCH 84 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~ 84 (352)
..++.+.|+.|+|||.||+.+++.+. ......+-+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~ 38 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRI 38 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHH
Confidence 35788999999999999999999887 555544444
No 499
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.94 E-value=0.092 Score=48.17 Aligned_cols=80 Identities=16% Similarity=0.158 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhcCCCCCCC-C----CCcccchhhHHHHHHHhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC
Q 036788 6 VKEVVNQNLKRLAEVSPCSN-K----NQLVEVESRVEEIESLLG-AGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFE 79 (352)
Q Consensus 6 i~~i~~~v~~~~~~~~~~~~-~----~~~vGR~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~ 79 (352)
+++.+.+|-+.+........ + ...--...-...|-..|. .+-+.-+++-|+|..|+||||||..+....+..-.
T Consensus 3 l~~~~~~i~k~~g~~~i~~lg~~~~~~~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~ 82 (322)
T PF00154_consen 3 LEKALKQIEKKFGKGSIMRLGDNAESQNIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGG 82 (322)
T ss_dssp HHHHHHHHHHHHTTTSSEETTS-C-GCSS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhCCCceeecCCcccccccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccc
Confidence 55666666666554322100 0 011112233345555554 12233469999999999999999999987765555
Q ss_pred ceEEEe
Q 036788 80 GSCCHQ 85 (352)
Q Consensus 80 ~~~~~~ 85 (352)
..+|++
T Consensus 83 ~~a~ID 88 (322)
T PF00154_consen 83 ICAFID 88 (322)
T ss_dssp EEEEEE
T ss_pred eeEEec
Confidence 667776
No 500
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=94.94 E-value=0.021 Score=48.53 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+|+|.|+.|+||||++..+.+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999863
Done!