Query 036788
Match_columns 352
No_of_seqs 291 out of 2280
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 08:50:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.5E-39 5E-44 320.1 16.5 247 30-283 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-36 4.4E-41 325.0 21.3 257 22-282 120-452 (1249)
3 1z6t_A APAF-1, apoptotic prote 100.0 4.8E-34 1.7E-38 283.5 17.4 250 21-278 119-448 (591)
4 1vt4_I APAF-1 related killer D 100.0 1.7E-32 5.8E-37 277.1 20.2 235 28-275 129-436 (1221)
5 2qen_A Walker-type ATPase; unk 99.6 2.4E-15 8.4E-20 138.7 14.9 239 18-276 4-349 (350)
6 2fna_A Conserved hypothetical 99.6 3.9E-14 1.3E-18 130.9 16.2 239 18-275 5-356 (357)
7 1w5s_A Origin recognition comp 99.5 9.7E-13 3.3E-17 124.1 18.5 239 21-271 17-387 (412)
8 2qby_B CDC6 homolog 3, cell di 99.3 9.2E-11 3.1E-15 109.5 20.2 110 25-140 19-145 (384)
9 1fnn_A CDC6P, cell division co 99.3 1.2E-09 4.2E-14 101.9 23.1 112 22-139 13-136 (389)
10 2v1u_A Cell division control p 99.2 1.1E-09 3.9E-14 101.9 22.4 113 22-140 15-142 (387)
11 2qby_A CDC6 homolog 1, cell di 99.2 9.7E-11 3.3E-15 109.1 15.0 113 21-139 15-139 (386)
12 1njg_A DNA polymerase III subu 98.9 2.3E-08 7.8E-13 86.4 12.5 49 28-77 24-72 (250)
13 1jbk_A CLPB protein; beta barr 98.7 5.3E-08 1.8E-12 81.0 10.1 46 28-75 23-68 (195)
14 2chg_A Replication factor C sm 98.7 1.4E-07 4.9E-12 80.2 12.8 48 28-77 18-65 (226)
15 1sxj_B Activator 1 37 kDa subu 98.7 2.3E-07 7.9E-12 84.0 13.8 46 28-75 22-67 (323)
16 2p65_A Hypothetical protein PF 98.6 1.8E-07 6.2E-12 77.4 9.9 47 28-76 23-69 (187)
17 3te6_A Regulatory protein SIR3 98.6 2.5E-07 8.5E-12 83.7 10.2 109 28-141 21-145 (318)
18 1hqc_A RUVB; extended AAA-ATPa 98.5 6.6E-06 2.3E-10 74.5 17.7 51 24-75 10-63 (324)
19 1iqp_A RFCS; clamp loader, ext 98.4 1.9E-06 6.6E-11 78.0 11.6 49 25-76 24-72 (327)
20 1jr3_A DNA polymerase III subu 98.3 7E-06 2.4E-10 75.9 12.5 48 28-76 17-64 (373)
21 3b9p_A CG5977-PA, isoform A; A 98.2 6.4E-06 2.2E-10 73.8 10.0 68 8-75 2-79 (297)
22 1sxj_A Activator 1 95 kDa subu 98.2 8.5E-06 2.9E-10 79.0 11.3 47 28-74 40-101 (516)
23 2chq_A Replication factor C sm 98.2 9.2E-06 3.2E-10 73.2 10.4 46 28-75 18-63 (319)
24 1sxj_D Activator 1 41 kDa subu 98.2 8.7E-05 3E-09 67.8 17.0 48 25-75 36-83 (353)
25 3d8b_A Fidgetin-like protein 1 98.1 5.3E-06 1.8E-10 76.5 8.4 69 3-75 64-142 (357)
26 3h4m_A Proteasome-activating n 98.1 1.1E-05 3.7E-10 71.8 8.9 55 21-76 12-77 (285)
27 2w58_A DNAI, primosome compone 98.1 1.5E-05 5.3E-10 67.0 9.3 58 28-85 26-89 (202)
28 3pvs_A Replication-associated 98.1 7.8E-06 2.7E-10 77.7 8.0 48 28-77 27-77 (447)
29 1qvr_A CLPB protein; coiled co 97.9 3.2E-05 1.1E-09 79.6 10.4 46 28-75 171-216 (854)
30 2z4s_A Chromosomal replication 97.9 2.4E-05 8.2E-10 74.2 8.6 97 28-139 106-205 (440)
31 3u61_B DNA polymerase accessor 97.9 0.0001 3.5E-09 66.8 11.7 47 28-75 27-73 (324)
32 3ec2_A DNA replication protein 97.9 6.7E-05 2.3E-09 61.8 9.5 48 28-75 11-63 (180)
33 2zan_A Vacuolar protein sortin 97.9 4E-05 1.4E-09 72.8 9.0 47 28-74 135-191 (444)
34 2qz4_A Paraplegin; AAA+, SPG7, 97.9 6.3E-05 2.1E-09 65.8 9.7 49 28-76 7-65 (262)
35 3cf0_A Transitional endoplasmi 97.9 4.3E-05 1.5E-09 68.7 8.7 48 28-75 16-74 (301)
36 1l8q_A Chromosomal replication 97.8 0.0001 3.5E-09 66.8 10.8 54 23-77 8-64 (324)
37 1r6b_X CLPA protein; AAA+, N-t 97.8 6.5E-05 2.2E-09 76.2 9.8 46 28-75 187-232 (758)
38 3pxg_A Negative regulator of g 97.8 7E-05 2.4E-09 71.6 8.9 47 28-76 181-227 (468)
39 3syl_A Protein CBBX; photosynt 97.7 8.9E-05 3E-09 66.6 9.0 49 28-76 32-93 (309)
40 1xwi_A SKD1 protein; VPS4B, AA 97.7 0.00023 7.9E-09 64.5 11.5 47 28-74 13-69 (322)
41 1d2n_A N-ethylmaleimide-sensit 97.7 0.00031 1E-08 61.9 11.9 48 28-75 34-89 (272)
42 3vfd_A Spastin; ATPase, microt 97.7 9.2E-05 3.1E-09 69.0 8.5 48 28-75 116-173 (389)
43 3n70_A Transport activator; si 97.7 2.1E-05 7.2E-10 62.6 3.5 47 28-74 2-48 (145)
44 4b4t_J 26S protease regulatory 97.6 0.00017 5.7E-09 66.9 8.8 50 28-77 149-209 (405)
45 3bos_A Putative DNA replicatio 97.6 0.00012 4.3E-09 62.7 7.5 56 28-85 29-87 (242)
46 3pfi_A Holliday junction ATP-d 97.6 3.2E-05 1.1E-09 70.5 3.7 49 28-76 30-81 (338)
47 2c9o_A RUVB-like 1; hexameric 97.6 0.00017 5.8E-09 68.7 8.7 50 28-77 38-90 (456)
48 4b4t_L 26S protease subunit RP 97.6 0.00045 1.5E-08 65.0 10.9 50 28-77 182-242 (437)
49 3t15_A Ribulose bisphosphate c 97.5 7.4E-05 2.5E-09 66.9 5.1 28 49-76 35-62 (293)
50 4fcw_A Chaperone protein CLPB; 97.5 0.00014 4.7E-09 65.3 6.9 49 28-76 18-73 (311)
51 3uk6_A RUVB-like 2; hexameric 97.5 0.00013 4.5E-09 67.2 6.7 50 28-77 45-97 (368)
52 3pxi_A Negative regulator of g 97.5 0.00025 8.7E-09 71.9 8.9 46 28-75 181-226 (758)
53 4b4t_H 26S protease regulatory 97.5 0.00048 1.6E-08 64.9 9.9 50 28-77 210-270 (467)
54 4b4t_K 26S protease regulatory 97.5 0.00048 1.7E-08 64.6 9.9 50 28-77 173-233 (428)
55 3hu3_A Transitional endoplasmi 97.4 0.0002 6.9E-09 68.7 7.3 48 28-75 205-263 (489)
56 2qp9_X Vacuolar protein sortin 97.4 0.00011 3.8E-09 67.6 5.1 48 28-75 52-109 (355)
57 3eie_A Vacuolar protein sortin 97.4 0.00013 4.5E-09 66.1 5.4 49 28-76 19-77 (322)
58 2qgz_A Helicase loader, putati 97.4 0.00022 7.7E-09 64.2 6.6 58 28-85 125-188 (308)
59 2r62_A Cell division protease 97.4 0.00012 4.1E-09 64.4 4.2 50 28-77 12-71 (268)
60 4b4t_I 26S protease regulatory 97.3 0.00086 2.9E-08 62.6 9.3 50 28-77 183-243 (437)
61 3co5_A Putative two-component 97.3 3.5E-05 1.2E-09 61.2 -0.0 48 28-75 5-52 (143)
62 1sxj_E Activator 1 40 kDa subu 97.3 0.00026 8.8E-09 64.8 5.5 45 28-74 15-60 (354)
63 1ofh_A ATP-dependent HSL prote 97.2 0.00015 5.2E-09 64.9 3.5 48 28-75 16-75 (310)
64 2ce7_A Cell division protein F 97.2 0.0011 3.6E-08 63.3 9.4 49 28-76 17-75 (476)
65 1lv7_A FTSH; alpha/beta domain 97.2 0.00025 8.6E-09 61.9 4.8 49 28-76 13-71 (257)
66 1in4_A RUVB, holliday junction 97.2 0.00018 6E-09 65.6 3.7 48 28-75 26-76 (334)
67 2bjv_A PSP operon transcriptio 97.2 0.00024 8.1E-09 62.3 4.4 48 28-75 7-54 (265)
68 3cf2_A TER ATPase, transitiona 97.2 0.00046 1.6E-08 69.7 6.7 49 28-76 205-264 (806)
69 1a5t_A Delta prime, HOLB; zinc 97.2 0.0048 1.6E-07 56.0 13.0 42 33-75 8-49 (334)
70 2gno_A DNA polymerase III, gam 97.2 0.0029 9.8E-08 56.8 11.0 42 31-74 1-42 (305)
71 2cvh_A DNA repair and recombin 97.1 0.0023 7.8E-08 54.0 9.5 33 50-85 20-52 (220)
72 2r44_A Uncharacterized protein 97.1 0.00026 9E-09 64.2 3.7 45 28-76 28-72 (331)
73 1ypw_A Transitional endoplasmi 97.1 0.00048 1.6E-08 70.2 5.6 49 28-76 205-264 (806)
74 3hws_A ATP-dependent CLP prote 97.1 0.00053 1.8E-08 63.1 5.3 48 28-75 16-76 (363)
75 2x8a_A Nuclear valosin-contain 97.0 0.0035 1.2E-07 55.3 10.3 49 28-76 11-70 (274)
76 1sxj_C Activator 1 40 kDa subu 97.0 0.00051 1.7E-08 62.6 5.0 47 28-76 26-72 (340)
77 4b4t_M 26S protease regulatory 97.0 0.0006 2.1E-08 64.1 5.0 50 28-77 182-242 (434)
78 1qhx_A CPT, protein (chloramph 97.0 0.00037 1.3E-08 57.0 3.2 25 51-75 4-28 (178)
79 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.0012 3.9E-08 59.4 6.4 24 50-73 123-146 (331)
80 1ojl_A Transcriptional regulat 96.9 0.00042 1.4E-08 62.2 3.4 47 28-74 3-49 (304)
81 3hr8_A Protein RECA; alpha and 96.9 0.0073 2.5E-07 55.2 11.7 52 34-85 44-96 (356)
82 1rz3_A Hypothetical protein rb 96.9 0.0015 5.2E-08 54.7 6.5 44 32-75 3-47 (201)
83 1vma_A Cell division protein F 96.9 0.0084 2.9E-07 53.7 11.8 45 33-77 81-131 (306)
84 3bh0_A DNAB-like replicative h 96.9 0.0047 1.6E-07 55.6 9.8 51 50-107 68-118 (315)
85 3kb2_A SPBC2 prophage-derived 96.9 0.0006 2E-08 55.2 3.4 25 51-75 2-26 (173)
86 3nbx_X ATPase RAVA; AAA+ ATPas 96.9 0.0011 3.8E-08 63.6 5.8 59 5-75 8-66 (500)
87 1ixz_A ATP-dependent metallopr 96.9 0.00072 2.5E-08 58.8 4.1 51 24-75 14-74 (254)
88 3c8u_A Fructokinase; YP_612366 96.8 0.0012 4E-08 55.7 5.1 40 36-75 8-47 (208)
89 3m6a_A ATP-dependent protease 96.8 0.0057 2E-07 59.4 10.0 48 29-76 83-134 (543)
90 3trf_A Shikimate kinase, SK; a 96.8 0.00079 2.7E-08 55.4 3.4 25 51-75 6-30 (185)
91 3vaa_A Shikimate kinase, SK; s 96.7 0.00085 2.9E-08 56.1 3.5 26 50-75 25-50 (199)
92 1iy2_A ATP-dependent metallopr 96.7 0.001 3.5E-08 58.7 4.2 51 24-75 38-98 (278)
93 1odf_A YGR205W, hypothetical 3 96.7 0.0021 7.3E-08 57.2 6.2 29 47-75 28-56 (290)
94 1nks_A Adenylate kinase; therm 96.7 0.0017 5.9E-08 53.5 5.3 26 51-76 2-27 (194)
95 3dm5_A SRP54, signal recogniti 96.7 0.014 4.9E-07 54.8 11.9 29 49-77 99-127 (443)
96 1ly1_A Polynucleotide kinase; 96.7 0.001 3.6E-08 54.2 3.7 23 51-73 3-25 (181)
97 2kjq_A DNAA-related protein; s 96.7 0.0018 6.1E-08 51.6 4.9 36 50-85 36-71 (149)
98 1um8_A ATP-dependent CLP prote 96.7 0.0013 4.6E-08 60.7 4.7 48 28-75 22-97 (376)
99 3lw7_A Adenylate kinase relate 96.7 0.00095 3.2E-08 54.0 3.3 22 51-73 2-23 (179)
100 1v5w_A DMC1, meiotic recombina 96.7 0.0094 3.2E-07 54.3 10.2 48 38-85 110-163 (343)
101 3ice_A Transcription terminati 96.7 0.00067 2.3E-08 62.3 2.4 27 51-77 175-201 (422)
102 1sky_E F1-ATPase, F1-ATP synth 96.6 0.0049 1.7E-07 58.2 8.1 30 52-81 153-182 (473)
103 2rhm_A Putative kinase; P-loop 96.6 0.0017 5.8E-08 53.6 4.4 25 50-74 5-29 (193)
104 1g8p_A Magnesium-chelatase 38 96.6 0.001 3.5E-08 60.6 3.2 49 24-75 22-70 (350)
105 1zuh_A Shikimate kinase; alpha 96.6 0.0013 4.5E-08 53.2 3.5 27 49-75 6-32 (168)
106 3tlx_A Adenylate kinase 2; str 96.6 0.0019 6.4E-08 55.9 4.6 41 34-74 13-53 (243)
107 1kht_A Adenylate kinase; phosp 96.5 0.0016 5.6E-08 53.6 3.8 26 51-76 4-29 (192)
108 3uie_A Adenylyl-sulfate kinase 96.5 0.0029 9.8E-08 52.9 5.3 27 49-75 24-50 (200)
109 1kag_A SKI, shikimate kinase I 96.5 0.0012 4.2E-08 53.5 2.9 25 51-75 5-29 (173)
110 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0019 6.6E-08 58.8 4.4 49 30-78 2-52 (359)
111 1gvn_B Zeta; postsegregational 96.5 0.0042 1.4E-07 55.2 6.5 26 49-74 32-57 (287)
112 3iij_A Coilin-interacting nucl 96.5 0.0011 3.7E-08 54.3 2.5 25 50-74 11-35 (180)
113 2yvu_A Probable adenylyl-sulfa 96.5 0.0029 9.8E-08 52.1 5.0 27 50-76 13-39 (186)
114 3io5_A Recombination and repai 96.5 0.02 6.7E-07 51.3 10.6 78 52-139 30-122 (333)
115 2plr_A DTMP kinase, probable t 96.5 0.0033 1.1E-07 52.6 5.4 28 51-78 5-32 (213)
116 1zp6_A Hypothetical protein AT 96.5 0.0016 5.6E-08 53.7 3.4 24 50-73 9-32 (191)
117 3t61_A Gluconokinase; PSI-biol 96.4 0.0014 4.7E-08 54.8 2.9 25 50-74 18-42 (202)
118 1tue_A Replication protein E1; 96.4 0.0029 1E-07 53.0 4.8 41 35-76 44-84 (212)
119 2ze6_A Isopentenyl transferase 96.4 0.0019 6.3E-08 56.3 3.7 25 51-75 2-26 (253)
120 2jaq_A Deoxyguanosine kinase; 96.4 0.0016 5.4E-08 54.3 3.1 24 52-75 2-25 (205)
121 3e70_C DPA, signal recognition 96.4 0.0098 3.4E-07 53.8 8.6 29 49-77 128-156 (328)
122 2iyv_A Shikimate kinase, SK; t 96.4 0.0014 4.8E-08 53.8 2.7 25 51-75 3-27 (184)
123 1tev_A UMP-CMP kinase; ploop, 96.4 0.0023 7.7E-08 52.8 4.0 24 51-74 4-27 (196)
124 4eun_A Thermoresistant glucoki 96.4 0.003 1E-07 52.8 4.6 25 50-74 29-53 (200)
125 1via_A Shikimate kinase; struc 96.4 0.0017 5.8E-08 52.9 3.0 24 52-75 6-29 (175)
126 3kl4_A SRP54, signal recogniti 96.4 0.023 7.9E-07 53.3 11.0 29 49-77 96-124 (433)
127 1zu4_A FTSY; GTPase, signal re 96.4 0.0084 2.9E-07 54.1 7.8 29 49-77 104-132 (320)
128 1ukz_A Uridylate kinase; trans 96.4 0.0029 9.8E-08 52.8 4.4 27 48-74 13-39 (203)
129 3tqc_A Pantothenate kinase; bi 96.4 0.0057 1.9E-07 55.1 6.5 49 28-76 68-118 (321)
130 1knq_A Gluconate kinase; ALFA/ 96.3 0.0026 8.9E-08 51.7 4.0 25 50-74 8-32 (175)
131 1ex7_A Guanylate kinase; subst 96.3 0.0013 4.4E-08 54.5 2.1 29 51-79 2-30 (186)
132 3cm0_A Adenylate kinase; ATP-b 96.3 0.0027 9.2E-08 52.1 4.0 25 51-75 5-29 (186)
133 2c95_A Adenylate kinase 1; tra 96.3 0.0024 8.4E-08 52.8 3.7 26 50-75 9-34 (196)
134 1kgd_A CASK, peripheral plasma 96.3 0.0021 7.3E-08 52.7 3.3 25 51-75 6-30 (180)
135 2bwj_A Adenylate kinase 5; pho 96.3 0.0023 8E-08 53.0 3.6 25 51-75 13-37 (199)
136 1qf9_A UMP/CMP kinase, protein 96.3 0.0034 1.1E-07 51.7 4.5 26 50-75 6-31 (194)
137 3b9q_A Chloroplast SRP recepto 96.3 0.0094 3.2E-07 53.3 7.7 35 50-85 100-134 (302)
138 1e6c_A Shikimate kinase; phosp 96.3 0.0021 7E-08 52.1 3.1 25 51-75 3-27 (173)
139 1xjc_A MOBB protein homolog; s 96.3 0.004 1.4E-07 50.6 4.7 34 49-82 3-37 (169)
140 2vli_A Antibiotic resistance p 96.3 0.0014 4.9E-08 53.6 2.1 26 50-75 5-30 (183)
141 1y63_A LMAJ004144AAA protein; 96.3 0.0024 8.4E-08 52.5 3.5 24 50-73 10-33 (184)
142 2cdn_A Adenylate kinase; phosp 96.3 0.003 1E-07 52.7 4.1 26 50-75 20-45 (201)
143 2ck3_D ATP synthase subunit be 96.3 0.017 5.7E-07 54.6 9.5 53 51-107 154-207 (482)
144 1uj2_A Uridine-cytidine kinase 96.3 0.0028 9.6E-08 55.1 4.0 28 48-75 20-47 (252)
145 1nn5_A Similar to deoxythymidy 96.3 0.0038 1.3E-07 52.4 4.7 28 50-77 9-36 (215)
146 2pt5_A Shikimate kinase, SK; a 96.3 0.0027 9.3E-08 51.1 3.6 24 52-75 2-25 (168)
147 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0029 9.9E-08 55.3 4.0 26 50-75 4-29 (260)
148 2q6t_A DNAB replication FORK h 96.2 0.02 6.8E-07 54.1 10.0 52 50-108 200-252 (444)
149 2p5t_B PEZT; postsegregational 96.2 0.0062 2.1E-07 52.9 6.0 27 49-75 31-57 (253)
150 1uf9_A TT1252 protein; P-loop, 96.2 0.0031 1E-07 52.5 3.9 26 48-73 6-31 (203)
151 1aky_A Adenylate kinase; ATP:A 96.2 0.003 1E-07 53.5 3.8 26 50-75 4-29 (220)
152 4a1f_A DNAB helicase, replicat 96.2 0.01 3.4E-07 53.9 7.3 51 51-108 47-97 (338)
153 1g41_A Heat shock protein HSLU 96.2 0.005 1.7E-07 57.9 5.5 50 28-77 16-77 (444)
154 2qor_A Guanylate kinase; phosp 96.2 0.0023 7.9E-08 53.6 2.9 26 50-75 12-37 (204)
155 2bdt_A BH3686; alpha-beta prot 96.2 0.0031 1.1E-07 52.0 3.7 22 51-72 3-24 (189)
156 3p32_A Probable GTPase RV1496/ 96.2 0.0099 3.4E-07 54.4 7.3 40 37-76 66-105 (355)
157 2pbr_A DTMP kinase, thymidylat 96.2 0.0033 1.1E-07 51.8 3.7 24 52-75 2-25 (195)
158 2xxa_A Signal recognition part 96.2 0.03 1E-06 52.6 10.6 72 4-77 46-127 (433)
159 3a00_A Guanylate kinase, GMP k 96.1 0.0022 7.6E-08 52.9 2.6 28 51-78 2-29 (186)
160 2og2_A Putative signal recogni 96.1 0.013 4.3E-07 53.7 7.8 35 50-85 157-191 (359)
161 2wwf_A Thymidilate kinase, put 96.1 0.003 1E-07 53.0 3.4 28 50-77 10-37 (212)
162 2dhr_A FTSH; AAA+ protein, hex 96.1 0.0035 1.2E-07 60.0 4.2 48 28-75 32-89 (499)
163 3fwy_A Light-independent proto 96.1 0.0054 1.8E-07 55.2 5.2 37 48-84 46-82 (314)
164 1cke_A CK, MSSA, protein (cyti 96.1 0.0034 1.2E-07 53.3 3.7 25 51-75 6-30 (227)
165 3umf_A Adenylate kinase; rossm 96.1 0.005 1.7E-07 52.2 4.6 27 48-74 27-53 (217)
166 1qvr_A CLPB protein; coiled co 96.1 0.0039 1.3E-07 64.0 4.6 49 28-76 559-614 (854)
167 2if2_A Dephospho-COA kinase; a 96.1 0.0032 1.1E-07 52.5 3.3 22 51-72 2-23 (204)
168 3pxi_A Negative regulator of g 96.1 0.0068 2.3E-07 61.4 6.3 49 28-76 492-547 (758)
169 2wsm_A Hydrogenase expression/ 96.1 0.0068 2.3E-07 51.1 5.3 47 30-78 12-58 (221)
170 3tau_A Guanylate kinase, GMP k 96.1 0.0038 1.3E-07 52.5 3.6 27 50-76 8-34 (208)
171 2hf9_A Probable hydrogenase ni 96.0 0.012 4.1E-07 49.7 6.8 42 34-77 24-65 (226)
172 3tr0_A Guanylate kinase, GMP k 96.0 0.0036 1.2E-07 52.2 3.4 24 51-74 8-31 (205)
173 3bgw_A DNAB-like replicative h 96.0 0.018 6.2E-07 54.3 8.6 51 50-107 197-247 (444)
174 3asz_A Uridine kinase; cytidin 96.0 0.0048 1.7E-07 51.8 4.2 27 49-75 5-31 (211)
175 2j41_A Guanylate kinase; GMP, 96.0 0.0037 1.3E-07 52.1 3.4 24 51-74 7-30 (207)
176 2px0_A Flagellar biosynthesis 96.0 0.019 6.5E-07 51.1 8.2 27 49-75 104-130 (296)
177 3fb4_A Adenylate kinase; psych 96.0 0.0042 1.4E-07 52.4 3.8 23 52-74 2-24 (216)
178 1u94_A RECA protein, recombina 96.0 0.014 4.7E-07 53.4 7.4 81 5-85 13-98 (356)
179 2zr9_A Protein RECA, recombina 96.0 0.016 5.4E-07 53.0 7.8 81 5-85 11-96 (349)
180 2z0h_A DTMP kinase, thymidylat 96.0 0.0044 1.5E-07 51.2 3.8 25 52-76 2-26 (197)
181 2grj_A Dephospho-COA kinase; T 96.0 0.0053 1.8E-07 51.0 4.1 26 49-74 11-36 (192)
182 2qt1_A Nicotinamide riboside k 96.0 0.0048 1.6E-07 51.7 3.9 25 49-73 20-44 (207)
183 1zd8_A GTP:AMP phosphotransfer 96.0 0.0037 1.3E-07 53.3 3.2 25 50-74 7-31 (227)
184 1zak_A Adenylate kinase; ATP:A 96.0 0.0037 1.3E-07 53.0 3.2 26 50-75 5-30 (222)
185 2bbw_A Adenylate kinase 4, AK4 96.0 0.0044 1.5E-07 53.5 3.7 26 50-75 27-52 (246)
186 1fx0_B ATP synthase beta chain 95.9 0.02 6.8E-07 54.2 8.2 52 51-106 166-218 (498)
187 1jjv_A Dephospho-COA kinase; P 95.9 0.0046 1.6E-07 51.7 3.5 22 51-72 3-24 (206)
188 1ye8_A Protein THEP1, hypothet 95.9 0.0055 1.9E-07 50.3 3.9 24 52-75 2-25 (178)
189 1gtv_A TMK, thymidylate kinase 95.9 0.0027 9.1E-08 53.4 2.0 25 52-76 2-26 (214)
190 3dl0_A Adenylate kinase; phosp 95.9 0.0049 1.7E-07 52.0 3.6 23 52-74 2-24 (216)
191 2pez_A Bifunctional 3'-phospho 95.9 0.0061 2.1E-07 49.7 4.1 26 50-75 5-30 (179)
192 3ney_A 55 kDa erythrocyte memb 95.9 0.0044 1.5E-07 51.7 3.2 26 50-75 19-44 (197)
193 2dr3_A UPF0273 protein PH0284; 95.9 0.0072 2.5E-07 51.8 4.7 35 51-85 24-58 (247)
194 3be4_A Adenylate kinase; malar 95.9 0.0043 1.5E-07 52.5 3.1 24 51-74 6-29 (217)
195 1m7g_A Adenylylsulfate kinase; 95.8 0.0063 2.2E-07 51.2 4.0 26 50-75 25-50 (211)
196 2r6a_A DNAB helicase, replicat 95.8 0.023 7.9E-07 53.8 8.3 50 50-106 203-253 (454)
197 3l0o_A Transcription terminati 95.8 0.0014 4.6E-08 60.3 -0.3 38 38-76 164-201 (427)
198 4e22_A Cytidylate kinase; P-lo 95.8 0.0055 1.9E-07 53.2 3.6 26 50-75 27-52 (252)
199 4a74_A DNA repair and recombin 95.8 0.013 4.4E-07 49.6 5.8 26 50-75 25-50 (231)
200 2v54_A DTMP kinase, thymidylat 95.8 0.0053 1.8E-07 51.1 3.3 24 51-74 5-28 (204)
201 2yhs_A FTSY, cell division pro 95.8 0.02 6.8E-07 54.5 7.5 35 50-85 293-327 (503)
202 3cf2_A TER ATPase, transitiona 95.8 0.0076 2.6E-07 60.9 4.9 49 28-76 478-537 (806)
203 1rj9_A FTSY, signal recognitio 95.8 0.011 3.8E-07 52.9 5.5 36 49-85 101-136 (304)
204 4gp7_A Metallophosphoesterase; 95.8 0.005 1.7E-07 50.0 2.9 20 51-70 10-29 (171)
205 3k1j_A LON protease, ATP-depen 95.7 0.0096 3.3E-07 58.6 5.5 46 28-77 42-87 (604)
206 3nwj_A ATSK2; P loop, shikimat 95.7 0.0042 1.4E-07 54.0 2.6 25 51-75 49-73 (250)
207 1n0w_A DNA repair protein RAD5 95.7 0.011 3.9E-07 50.4 5.3 36 50-85 24-65 (243)
208 3ake_A Cytidylate kinase; CMP 95.7 0.0066 2.2E-07 50.6 3.7 24 52-75 4-27 (208)
209 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.0075 2.6E-07 51.1 4.1 35 51-85 24-58 (235)
210 1u0j_A DNA replication protein 95.7 0.012 4.1E-07 51.4 5.3 36 39-74 93-128 (267)
211 1lvg_A Guanylate kinase, GMP k 95.7 0.0049 1.7E-07 51.4 2.7 25 51-75 5-29 (198)
212 1vht_A Dephospho-COA kinase; s 95.7 0.0076 2.6E-07 50.9 3.9 23 50-72 4-26 (218)
213 1e4v_A Adenylate kinase; trans 95.7 0.007 2.4E-07 51.0 3.7 23 52-74 2-24 (214)
214 2xb4_A Adenylate kinase; ATP-b 95.7 0.0072 2.5E-07 51.4 3.7 23 52-74 2-24 (223)
215 1ak2_A Adenylate kinase isoenz 95.7 0.0078 2.7E-07 51.5 4.0 26 50-75 16-41 (233)
216 2f6r_A COA synthase, bifunctio 95.7 0.0071 2.4E-07 53.5 3.8 24 49-72 74-97 (281)
217 1r6b_X CLPA protein; AAA+, N-t 95.6 0.006 2.1E-07 61.8 3.5 48 28-75 459-513 (758)
218 3d3q_A TRNA delta(2)-isopenten 95.6 0.008 2.7E-07 54.5 3.8 25 51-75 8-32 (340)
219 1xp8_A RECA protein, recombina 95.6 0.028 9.7E-07 51.6 7.6 54 32-85 55-109 (366)
220 3r20_A Cytidylate kinase; stru 95.5 0.0073 2.5E-07 51.8 3.3 26 50-75 9-34 (233)
221 2z43_A DNA repair and recombin 95.5 0.029 1E-06 50.6 7.5 36 50-85 107-148 (324)
222 2zts_A Putative uncharacterize 95.5 0.013 4.3E-07 50.3 4.9 36 50-85 30-66 (251)
223 3sr0_A Adenylate kinase; phosp 95.5 0.009 3.1E-07 50.2 3.8 23 52-74 2-24 (206)
224 1j8m_F SRP54, signal recogniti 95.5 0.017 5.9E-07 51.4 5.8 35 50-84 98-132 (297)
225 2r8r_A Sensor protein; KDPD, P 95.5 0.018 6E-07 49.0 5.5 27 51-77 7-33 (228)
226 2jeo_A Uridine-cytidine kinase 95.5 0.0096 3.3E-07 51.4 3.9 26 49-74 24-49 (245)
227 2ehv_A Hypothetical protein PH 95.5 0.011 3.7E-07 50.8 4.2 35 51-85 31-66 (251)
228 3crm_A TRNA delta(2)-isopenten 95.5 0.0087 3E-07 53.9 3.6 25 51-75 6-30 (323)
229 3aez_A Pantothenate kinase; tr 95.5 0.011 3.7E-07 53.1 4.3 29 48-76 88-116 (312)
230 4eaq_A DTMP kinase, thymidylat 95.5 0.021 7.3E-07 48.7 6.0 28 49-76 25-52 (229)
231 1znw_A Guanylate kinase, GMP k 95.4 0.0084 2.9E-07 50.3 3.3 25 51-75 21-45 (207)
232 1cr0_A DNA primase/helicase; R 95.4 0.029 1E-06 49.7 7.0 35 51-85 36-71 (296)
233 3vr4_D V-type sodium ATPase su 95.4 0.02 6.9E-07 53.7 6.0 86 51-139 152-259 (465)
234 1ltq_A Polynucleotide kinase; 95.4 0.0094 3.2E-07 53.0 3.7 23 51-73 3-25 (301)
235 3end_A Light-independent proto 95.4 0.016 5.6E-07 51.7 5.2 37 48-84 39-75 (307)
236 2orw_A Thymidine kinase; TMTK, 95.4 0.015 5E-07 48.0 4.5 25 51-75 4-28 (184)
237 1z6g_A Guanylate kinase; struc 95.4 0.0075 2.6E-07 51.1 2.8 24 51-74 24-47 (218)
238 4edh_A DTMP kinase, thymidylat 95.4 0.036 1.2E-06 46.7 7.0 27 51-77 7-33 (213)
239 1np6_A Molybdopterin-guanine d 95.3 0.011 3.9E-07 48.2 3.6 27 50-76 6-32 (174)
240 1a7j_A Phosphoribulokinase; tr 95.3 0.0055 1.9E-07 54.5 1.8 27 49-75 4-30 (290)
241 1yrb_A ATP(GTP)binding protein 95.3 0.022 7.4E-07 49.4 5.6 26 50-75 14-39 (262)
242 1htw_A HI0065; nucleotide-bind 95.3 0.012 4.3E-07 47.1 3.7 25 50-74 33-57 (158)
243 2eyu_A Twitching motility prot 95.3 0.015 5.1E-07 50.8 4.5 35 50-84 25-59 (261)
244 3foz_A TRNA delta(2)-isopenten 95.3 0.014 4.8E-07 52.1 4.3 26 49-74 9-34 (316)
245 2i3b_A HCR-ntpase, human cance 95.3 0.01 3.6E-07 49.1 3.2 24 52-75 3-26 (189)
246 1svm_A Large T antigen; AAA+ f 95.3 0.016 5.4E-07 53.5 4.7 27 48-74 167-193 (377)
247 1s96_A Guanylate kinase, GMP k 95.2 0.011 3.6E-07 50.3 3.3 26 50-75 16-41 (219)
248 2f1r_A Molybdopterin-guanine d 95.2 0.0089 3E-07 48.7 2.7 26 51-76 3-28 (171)
249 1cp2_A CP2, nitrogenase iron p 95.2 0.022 7.6E-07 49.6 5.5 34 51-84 2-35 (269)
250 3a8t_A Adenylate isopentenyltr 95.2 0.006 2E-07 55.2 1.7 25 50-74 40-64 (339)
251 3jvv_A Twitching mobility prot 95.2 0.006 2.1E-07 55.9 1.6 84 51-144 124-212 (356)
252 2j37_W Signal recognition part 95.1 0.032 1.1E-06 53.4 6.7 29 49-77 100-128 (504)
253 1nlf_A Regulatory protein REPA 95.1 0.024 8.2E-07 49.8 5.3 26 51-76 31-56 (279)
254 4hlc_A DTMP kinase, thymidylat 95.1 0.043 1.5E-06 46.0 6.6 30 51-80 3-32 (205)
255 3exa_A TRNA delta(2)-isopenten 95.1 0.014 4.7E-07 52.2 3.6 24 51-74 4-27 (322)
256 2c61_A A-type ATP synthase non 95.1 0.029 1E-06 52.8 6.0 86 51-139 153-260 (469)
257 3lnc_A Guanylate kinase, GMP k 95.1 0.0078 2.7E-07 51.4 2.0 24 51-74 28-52 (231)
258 2ocp_A DGK, deoxyguanosine kin 95.0 0.016 5.4E-07 49.8 3.8 26 50-75 2-27 (241)
259 3zvl_A Bifunctional polynucleo 95.0 0.0099 3.4E-07 55.7 2.7 26 49-74 257-282 (416)
260 1sq5_A Pantothenate kinase; P- 95.0 0.015 5.3E-07 52.0 3.9 28 48-75 78-105 (308)
261 2afh_E Nitrogenase iron protei 95.0 0.024 8.3E-07 50.0 5.1 28 50-77 2-29 (289)
262 1g8f_A Sulfate adenylyltransfe 95.0 0.021 7.3E-07 54.7 4.9 48 29-76 374-421 (511)
263 2ck3_A ATP synthase subunit al 95.0 0.038 1.3E-06 52.5 6.6 87 51-140 163-274 (510)
264 1q3t_A Cytidylate kinase; nucl 95.0 0.017 5.9E-07 49.4 3.9 27 49-75 15-41 (236)
265 3io3_A DEHA2D07832P; chaperone 95.0 0.037 1.2E-06 50.5 6.2 39 47-85 15-55 (348)
266 2b8t_A Thymidine kinase; deoxy 94.9 0.026 9E-07 48.0 4.8 35 50-84 12-46 (223)
267 1ls1_A Signal recognition part 94.9 0.027 9.2E-07 50.1 5.1 29 49-77 97-125 (295)
268 1ypw_A Transitional endoplasmi 94.9 0.012 4.1E-07 60.0 3.0 51 28-78 478-539 (806)
269 2v3c_C SRP54, signal recogniti 94.9 0.014 4.7E-07 54.9 3.2 27 50-76 99-125 (432)
270 2p67_A LAO/AO transport system 94.9 0.04 1.4E-06 50.0 6.2 29 47-75 53-81 (341)
271 2ffh_A Protein (FFH); SRP54, s 94.8 0.1 3.5E-06 48.8 9.0 29 49-77 97-125 (425)
272 2axn_A 6-phosphofructo-2-kinas 94.8 0.028 9.5E-07 54.2 5.3 30 49-78 34-63 (520)
273 3fkq_A NTRC-like two-domain pr 94.8 0.066 2.3E-06 49.2 7.7 38 48-85 141-179 (373)
274 2qe7_A ATP synthase subunit al 94.8 0.044 1.5E-06 51.9 6.5 85 51-140 163-266 (502)
275 2dyk_A GTP-binding protein; GT 94.8 0.02 7E-07 45.1 3.7 23 51-73 2-24 (161)
276 3iqw_A Tail-anchored protein t 94.8 0.044 1.5E-06 49.6 6.2 38 48-85 14-51 (334)
277 3cmu_A Protein RECA, recombina 94.8 0.06 2.1E-06 59.4 8.2 37 49-85 1426-1462(2050)
278 2qmh_A HPR kinase/phosphorylas 94.8 0.013 4.4E-07 48.8 2.3 24 51-74 35-58 (205)
279 1oix_A RAS-related protein RAB 94.7 0.018 6.3E-07 47.4 3.3 24 50-73 29-52 (191)
280 3fdi_A Uncharacterized protein 94.7 0.019 6.5E-07 48.0 3.4 25 51-75 7-31 (201)
281 2qm8_A GTPase/ATPase; G protei 94.7 0.05 1.7E-06 49.4 6.4 37 39-75 44-80 (337)
282 2i1q_A DNA repair and recombin 94.7 0.062 2.1E-06 48.3 7.0 38 37-74 85-122 (322)
283 4tmk_A Protein (thymidylate ki 94.7 0.051 1.8E-06 45.8 6.0 27 51-77 4-30 (213)
284 2onk_A Molybdate/tungstate ABC 94.6 0.019 6.4E-07 49.5 3.3 34 51-85 25-58 (240)
285 3eph_A TRNA isopentenyltransfe 94.6 0.022 7.5E-07 52.7 3.8 25 51-75 3-27 (409)
286 3lv8_A DTMP kinase, thymidylat 94.6 0.05 1.7E-06 46.6 5.9 35 50-84 27-62 (236)
287 3hjn_A DTMP kinase, thymidylat 94.6 0.064 2.2E-06 44.6 6.4 33 52-84 2-34 (197)
288 3tif_A Uncharacterized ABC tra 94.6 0.016 5.5E-07 49.7 2.8 34 51-85 32-65 (235)
289 2wji_A Ferrous iron transport 94.6 0.025 8.6E-07 45.2 3.8 22 51-72 4-25 (165)
290 3kjh_A CO dehydrogenase/acetyl 94.6 0.047 1.6E-06 46.7 5.8 33 53-85 3-35 (254)
291 3upu_A ATP-dependent DNA helic 94.6 0.06 2E-06 51.0 6.9 27 52-78 47-73 (459)
292 2f9l_A RAB11B, member RAS onco 94.6 0.02 6.8E-07 47.4 3.2 24 50-73 5-28 (199)
293 4gzl_A RAS-related C3 botulinu 94.6 0.023 7.9E-07 47.2 3.6 42 30-73 12-53 (204)
294 2r9v_A ATP synthase subunit al 94.6 0.048 1.6E-06 51.8 6.0 85 51-140 176-279 (515)
295 3ld9_A DTMP kinase, thymidylat 94.6 0.045 1.5E-06 46.5 5.4 28 49-76 20-47 (223)
296 2pcj_A ABC transporter, lipopr 94.6 0.016 5.5E-07 49.3 2.6 34 51-85 31-64 (224)
297 1pzn_A RAD51, DNA repair and r 94.6 0.026 8.8E-07 51.5 4.1 37 39-75 120-156 (349)
298 2ged_A SR-beta, signal recogni 94.6 0.037 1.3E-06 45.2 4.8 25 49-73 47-71 (193)
299 1z2a_A RAS-related protein RAB 94.5 0.028 9.7E-07 44.5 4.0 24 50-73 5-28 (168)
300 3cr8_A Sulfate adenylyltranfer 94.5 0.032 1.1E-06 54.1 4.9 27 50-76 369-395 (552)
301 3gmt_A Adenylate kinase; ssgci 94.5 0.026 8.8E-07 48.2 3.8 25 50-74 8-32 (230)
302 3oaa_A ATP synthase subunit al 94.5 0.053 1.8E-06 51.4 6.2 82 51-139 163-265 (513)
303 3zq6_A Putative arsenical pump 94.5 0.045 1.5E-06 49.3 5.6 35 50-84 14-48 (324)
304 3v9p_A DTMP kinase, thymidylat 94.5 0.039 1.3E-06 47.1 4.8 28 50-77 25-52 (227)
305 2zej_A Dardarin, leucine-rich 94.5 0.017 5.8E-07 47.1 2.5 21 52-72 4-24 (184)
306 3b85_A Phosphate starvation-in 94.5 0.015 5.3E-07 48.9 2.2 23 51-73 23-45 (208)
307 3gqb_B V-type ATP synthase bet 94.4 0.051 1.8E-06 51.0 5.9 25 51-75 148-172 (464)
308 2cbz_A Multidrug resistance-as 94.4 0.019 6.4E-07 49.4 2.8 23 51-73 32-54 (237)
309 3ug7_A Arsenical pump-driving 94.4 0.061 2.1E-06 49.0 6.3 31 47-77 23-53 (349)
310 2ce2_X GTPase HRAS; signaling 94.4 0.023 7.9E-07 44.8 3.1 22 52-73 5-26 (166)
311 1fzq_A ADP-ribosylation factor 94.4 0.038 1.3E-06 44.9 4.4 26 48-73 14-39 (181)
312 2d2e_A SUFC protein; ABC-ATPas 94.3 0.024 8.2E-07 49.1 3.3 23 51-73 30-52 (250)
313 1fx0_A ATP synthase alpha chai 94.3 0.037 1.3E-06 52.5 4.8 24 51-74 164-188 (507)
314 1b0u_A Histidine permease; ABC 94.3 0.02 6.9E-07 50.0 2.7 34 51-85 33-66 (262)
315 2h92_A Cytidylate kinase; ross 94.3 0.019 6.6E-07 48.3 2.5 24 51-74 4-27 (219)
316 3mfy_A V-type ATP synthase alp 94.3 0.08 2.7E-06 50.8 6.9 48 51-104 228-275 (588)
317 3gfo_A Cobalt import ATP-bindi 94.3 0.021 7.1E-07 50.3 2.7 34 51-85 35-68 (275)
318 2v9p_A Replication protein E1; 94.3 0.026 9E-07 50.3 3.5 25 50-74 126-150 (305)
319 2zu0_C Probable ATP-dependent 94.2 0.026 8.7E-07 49.5 3.3 23 51-73 47-69 (267)
320 1q57_A DNA primase/helicase; d 94.2 0.085 2.9E-06 50.6 7.2 52 50-108 242-294 (503)
321 1ji0_A ABC transporter; ATP bi 94.2 0.022 7.5E-07 49.0 2.8 34 51-85 33-66 (240)
322 1bif_A 6-phosphofructo-2-kinas 94.2 0.045 1.5E-06 52.0 5.2 29 50-78 39-67 (469)
323 1mv5_A LMRA, multidrug resista 94.2 0.024 8.1E-07 48.9 3.0 34 51-85 29-62 (243)
324 2wjg_A FEOB, ferrous iron tran 94.2 0.034 1.2E-06 45.2 3.8 23 50-72 7-29 (188)
325 2nzj_A GTP-binding protein REM 94.2 0.037 1.3E-06 44.2 3.9 23 50-72 4-26 (175)
326 1g6h_A High-affinity branched- 94.2 0.022 7.6E-07 49.5 2.8 34 51-85 34-67 (257)
327 4g1u_C Hemin import ATP-bindin 94.2 0.022 7.5E-07 49.9 2.7 34 51-85 38-71 (266)
328 3con_A GTPase NRAS; structural 94.2 0.028 9.6E-07 45.8 3.2 23 51-73 22-44 (190)
329 4dzz_A Plasmid partitioning pr 94.2 0.047 1.6E-06 45.2 4.6 35 51-85 2-37 (206)
330 2pze_A Cystic fibrosis transme 94.2 0.023 7.9E-07 48.5 2.7 24 51-74 35-58 (229)
331 2ff7_A Alpha-hemolysin translo 94.1 0.023 8E-07 49.1 2.8 34 51-85 36-69 (247)
332 2olj_A Amino acid ABC transpor 94.1 0.023 8E-07 49.6 2.7 34 51-85 51-84 (263)
333 1sgw_A Putative ABC transporte 94.1 0.02 6.9E-07 48.4 2.2 33 51-84 36-68 (214)
334 1kao_A RAP2A; GTP-binding prot 94.1 0.031 1.1E-06 44.1 3.2 23 51-73 4-26 (167)
335 1nrj_B SR-beta, signal recogni 94.1 0.035 1.2E-06 46.5 3.6 26 48-73 10-35 (218)
336 1c1y_A RAS-related protein RAP 94.1 0.031 1.1E-06 44.2 3.2 22 52-73 5-26 (167)
337 2ghi_A Transport protein; mult 94.0 0.025 8.6E-07 49.3 2.8 33 51-85 47-79 (260)
338 1z08_A RAS-related protein RAB 94.0 0.032 1.1E-06 44.4 3.2 24 50-73 6-29 (170)
339 3f9v_A Minichromosome maintena 94.0 0.015 5.2E-07 57.1 1.4 47 28-74 296-351 (595)
340 1tq4_A IIGP1, interferon-induc 94.0 0.024 8.2E-07 52.9 2.7 24 49-72 68-91 (413)
341 1vpl_A ABC transporter, ATP-bi 94.0 0.026 8.8E-07 49.1 2.7 34 51-85 42-75 (256)
342 2www_A Methylmalonic aciduria 94.0 0.059 2E-06 49.1 5.3 27 49-75 73-99 (349)
343 1r8s_A ADP-ribosylation factor 94.0 0.035 1.2E-06 43.8 3.4 21 53-73 3-23 (164)
344 2ixe_A Antigen peptide transpo 94.0 0.026 8.9E-07 49.5 2.8 34 51-85 46-79 (271)
345 1u8z_A RAS-related protein RAL 94.0 0.051 1.7E-06 42.9 4.3 24 50-73 4-27 (168)
346 1ek0_A Protein (GTP-binding pr 93.9 0.034 1.2E-06 44.1 3.2 22 52-73 5-26 (170)
347 1z0j_A RAB-22, RAS-related pro 93.9 0.034 1.2E-06 44.1 3.2 23 51-73 7-29 (170)
348 2fn4_A P23, RAS-related protei 93.9 0.051 1.8E-06 43.6 4.3 26 48-73 7-32 (181)
349 1m8p_A Sulfate adenylyltransfe 93.9 0.055 1.9E-06 52.7 5.2 26 50-75 396-421 (573)
350 2qi9_C Vitamin B12 import ATP- 93.9 0.027 9.3E-07 48.8 2.7 33 51-85 27-59 (249)
351 1nij_A Hypothetical protein YJ 93.9 0.03 1E-06 50.3 3.2 26 49-74 3-28 (318)
352 2yz2_A Putative ABC transporte 93.9 0.028 9.6E-07 49.2 2.8 34 51-85 34-67 (266)
353 2lkc_A Translation initiation 93.9 0.034 1.2E-06 44.6 3.2 24 49-72 7-30 (178)
354 2gks_A Bifunctional SAT/APS ki 93.9 0.08 2.7E-06 51.3 6.2 44 32-75 354-397 (546)
355 3ihw_A Centg3; RAS, centaurin, 93.9 0.034 1.2E-06 45.3 3.2 24 50-73 20-43 (184)
356 3q85_A GTP-binding protein REM 93.8 0.045 1.5E-06 43.4 3.8 22 51-72 3-24 (169)
357 3q72_A GTP-binding protein RAD 93.8 0.031 1.1E-06 44.3 2.8 21 52-72 4-24 (166)
358 2nq2_C Hypothetical ABC transp 93.8 0.029 9.8E-07 48.7 2.7 24 51-74 32-55 (253)
359 1p5z_B DCK, deoxycytidine kina 93.8 0.018 6.2E-07 50.2 1.4 27 49-75 23-49 (263)
360 2ihy_A ABC transporter, ATP-bi 93.8 0.028 9.7E-07 49.5 2.7 34 51-85 48-81 (279)
361 2gj8_A MNME, tRNA modification 93.8 0.033 1.1E-06 44.9 3.0 23 51-73 5-27 (172)
362 1wms_A RAB-9, RAB9, RAS-relate 93.8 0.036 1.2E-06 44.4 3.2 24 50-73 7-30 (177)
363 1m7b_A RND3/RHOE small GTP-bin 93.8 0.047 1.6E-06 44.3 3.9 24 50-73 7-30 (184)
364 1r2q_A RAS-related protein RAB 93.8 0.037 1.3E-06 43.8 3.2 23 51-73 7-29 (170)
365 1svi_A GTP-binding protein YSX 93.8 0.041 1.4E-06 45.0 3.5 25 48-72 21-45 (195)
366 3tmk_A Thymidylate kinase; pho 93.8 0.093 3.2E-06 44.3 5.8 26 51-76 6-31 (216)
367 3cwq_A Para family chromosome 93.8 0.096 3.3E-06 43.8 5.9 33 52-85 2-35 (209)
368 3hdt_A Putative kinase; struct 93.8 0.039 1.3E-06 46.9 3.4 26 50-75 14-39 (223)
369 2erx_A GTP-binding protein DI- 93.8 0.036 1.2E-06 44.1 3.0 22 51-72 4-25 (172)
370 1ky3_A GTP-binding protein YPT 93.8 0.05 1.7E-06 43.7 4.0 26 48-73 6-31 (182)
371 3c5c_A RAS-like protein 12; GD 93.8 0.037 1.3E-06 45.2 3.2 24 50-73 21-44 (187)
372 2j9r_A Thymidine kinase; TK1, 93.7 0.13 4.4E-06 43.2 6.5 35 50-84 28-62 (214)
373 3lda_A DNA repair protein RAD5 93.7 0.037 1.3E-06 51.4 3.4 37 37-73 165-201 (400)
374 2iwr_A Centaurin gamma 1; ANK 93.7 0.031 1.1E-06 45.0 2.6 24 50-73 7-30 (178)
375 2ewv_A Twitching motility prot 93.7 0.049 1.7E-06 50.1 4.2 84 50-142 136-223 (372)
376 1x6v_B Bifunctional 3'-phospho 93.7 0.051 1.8E-06 53.3 4.5 27 49-75 51-77 (630)
377 2vp4_A Deoxynucleoside kinase; 93.7 0.031 1E-06 47.6 2.6 25 49-73 19-43 (230)
378 1m2o_B GTP-binding protein SAR 93.7 0.039 1.3E-06 45.3 3.1 23 51-73 24-46 (190)
379 3ea0_A ATPase, para family; al 93.7 0.097 3.3E-06 44.6 5.8 36 49-84 3-40 (245)
380 3sop_A Neuronal-specific septi 93.6 0.041 1.4E-06 48.3 3.4 23 52-74 4-26 (270)
381 1upt_A ARL1, ADP-ribosylation 93.6 0.042 1.4E-06 43.7 3.2 24 50-73 7-30 (171)
382 3kta_A Chromosome segregation 93.6 0.041 1.4E-06 44.7 3.2 24 51-74 27-50 (182)
383 2cjw_A GTP-binding protein GEM 93.6 0.041 1.4E-06 45.2 3.2 23 50-72 6-28 (192)
384 3cmw_A Protein RECA, recombina 93.6 0.13 4.5E-06 56.0 7.8 91 37-137 718-819 (1706)
385 1g16_A RAS-related protein SEC 93.6 0.056 1.9E-06 42.8 3.9 22 51-72 4-25 (170)
386 4dsu_A GTPase KRAS, isoform 2B 93.5 0.043 1.5E-06 44.5 3.2 23 51-73 5-27 (189)
387 3pqc_A Probable GTP-binding pr 93.5 0.041 1.4E-06 44.8 3.1 25 49-73 22-46 (195)
388 3def_A T7I23.11 protein; chlor 93.5 0.077 2.6E-06 46.1 5.0 36 38-73 24-59 (262)
389 1lw7_A Transcriptional regulat 93.5 0.046 1.6E-06 50.1 3.7 26 50-75 170-195 (365)
390 1z0f_A RAB14, member RAS oncog 93.5 0.056 1.9E-06 43.2 3.9 25 49-73 14-38 (179)
391 1mh1_A RAC1; GTP-binding, GTPa 93.5 0.044 1.5E-06 44.3 3.2 23 51-73 6-28 (186)
392 2fz4_A DNA repair protein RAD2 93.5 0.52 1.8E-05 40.1 10.2 40 30-74 93-132 (237)
393 2woj_A ATPase GET3; tail-ancho 93.5 0.14 4.7E-06 46.7 6.8 37 49-85 17-55 (354)
394 2oil_A CATX-8, RAS-related pro 93.5 0.044 1.5E-06 44.8 3.2 24 50-73 25-48 (193)
395 3tqf_A HPR(Ser) kinase; transf 93.5 0.048 1.6E-06 44.2 3.2 23 51-73 17-39 (181)
396 3nh6_A ATP-binding cassette SU 93.5 0.031 1.1E-06 49.9 2.4 34 51-85 81-114 (306)
397 1g5t_A COB(I)alamin adenosyltr 93.5 0.18 6.2E-06 41.7 6.9 35 50-84 28-62 (196)
398 3tw8_B RAS-related protein RAB 93.5 0.048 1.7E-06 43.7 3.4 25 48-72 7-31 (181)
399 3bwd_D RAC-like GTP-binding pr 93.4 0.046 1.6E-06 44.0 3.2 23 51-73 9-31 (182)
400 3bfv_A CAPA1, CAPB2, membrane 93.4 0.15 5.1E-06 44.6 6.7 51 35-85 65-118 (271)
401 3t1o_A Gliding protein MGLA; G 93.4 0.046 1.6E-06 44.6 3.2 24 50-73 14-37 (198)
402 1h65_A Chloroplast outer envel 93.4 0.081 2.8E-06 46.1 5.0 26 48-73 37-62 (270)
403 2y8e_A RAB-protein 6, GH09086P 93.4 0.045 1.5E-06 43.8 3.1 23 51-73 15-37 (179)
404 2bme_A RAB4A, RAS-related prot 93.4 0.045 1.5E-06 44.3 3.1 25 49-73 9-33 (186)
405 2pjz_A Hypothetical protein ST 93.4 0.037 1.3E-06 48.3 2.7 33 51-85 31-63 (263)
406 3t5g_A GTP-binding protein RHE 93.4 0.046 1.6E-06 44.1 3.1 23 50-72 6-28 (181)
407 2hxs_A RAB-26, RAS-related pro 93.4 0.067 2.3E-06 42.8 4.1 23 50-72 6-28 (178)
408 2cxx_A Probable GTP-binding pr 93.4 0.041 1.4E-06 44.6 2.8 22 52-73 3-24 (190)
409 2atv_A RERG, RAS-like estrogen 93.4 0.047 1.6E-06 44.8 3.2 24 50-73 28-51 (196)
410 2a9k_A RAS-related protein RAL 93.4 0.048 1.6E-06 44.0 3.2 24 50-73 18-41 (187)
411 2efe_B Small GTP-binding prote 93.4 0.048 1.6E-06 43.9 3.2 24 50-73 12-35 (181)
412 3kkq_A RAS-related protein M-R 93.4 0.076 2.6E-06 42.8 4.4 25 49-73 17-41 (183)
413 3bc1_A RAS-related protein RAB 93.3 0.064 2.2E-06 43.5 4.0 25 49-73 10-34 (195)
414 3fvq_A Fe(3+) IONS import ATP- 93.3 0.044 1.5E-06 50.0 3.2 24 51-74 31-54 (359)
415 3dz8_A RAS-related protein RAB 93.3 0.051 1.7E-06 44.4 3.3 24 50-73 23-46 (191)
416 2g6b_A RAS-related protein RAB 93.3 0.05 1.7E-06 43.7 3.2 24 50-73 10-33 (180)
417 2oze_A ORF delta'; para, walke 93.3 0.063 2.1E-06 47.5 4.1 47 35-84 22-71 (298)
418 1gwn_A RHO-related GTP-binding 93.3 0.048 1.7E-06 45.4 3.1 25 49-73 27-51 (205)
419 3clv_A RAB5 protein, putative; 93.3 0.05 1.7E-06 44.5 3.2 24 50-73 7-30 (208)
420 1vg8_A RAS-related protein RAB 93.2 0.066 2.3E-06 44.2 4.0 25 49-73 7-31 (207)
421 3cbq_A GTP-binding protein REM 93.2 0.049 1.7E-06 44.9 3.1 23 49-71 22-44 (195)
422 3oes_A GTPase rhebl1; small GT 93.2 0.049 1.7E-06 44.9 3.1 25 49-73 23-47 (201)
423 2ew1_A RAS-related protein RAB 93.2 0.05 1.7E-06 45.2 3.1 25 49-73 25-49 (201)
424 3reg_A RHO-like small GTPase; 93.2 0.052 1.8E-06 44.4 3.2 24 50-73 23-46 (194)
425 1p9r_A General secretion pathw 93.2 0.18 6.2E-06 47.0 7.2 28 50-77 167-194 (418)
426 1zd9_A ADP-ribosylation factor 93.2 0.053 1.8E-06 44.2 3.2 24 50-73 22-45 (188)
427 2fh5_B SR-beta, signal recogni 93.2 0.052 1.8E-06 45.2 3.2 24 50-73 7-30 (214)
428 2bov_A RAla, RAS-related prote 93.2 0.078 2.7E-06 43.6 4.3 25 49-73 13-37 (206)
429 3ch4_B Pmkase, phosphomevalona 93.2 0.073 2.5E-06 44.3 4.0 27 49-75 10-36 (202)
430 3cio_A ETK, tyrosine-protein k 93.2 0.16 5.4E-06 45.2 6.5 38 48-85 102-140 (299)
431 2fg5_A RAB-22B, RAS-related pr 93.1 0.052 1.8E-06 44.4 3.1 24 50-73 23-46 (192)
432 2woo_A ATPase GET3; tail-ancho 93.1 0.14 4.9E-06 46.1 6.2 36 49-84 18-53 (329)
433 1z47_A CYSA, putative ABC-tran 93.1 0.052 1.8E-06 49.5 3.3 23 51-73 42-64 (355)
434 3tui_C Methionine import ATP-b 93.1 0.052 1.8E-06 49.7 3.3 33 51-84 55-87 (366)
435 2gf9_A RAS-related protein RAB 93.1 0.056 1.9E-06 44.0 3.2 24 50-73 22-45 (189)
436 3tkl_A RAS-related protein RAB 93.1 0.056 1.9E-06 44.1 3.2 25 49-73 15-39 (196)
437 4bas_A ADP-ribosylation factor 93.1 0.064 2.2E-06 43.9 3.6 25 48-72 15-39 (199)
438 3dzd_A Transcriptional regulat 93.1 0.16 5.5E-06 46.5 6.6 48 28-75 130-177 (368)
439 2a5j_A RAS-related protein RAB 93.1 0.057 1.9E-06 44.1 3.2 24 50-73 21-44 (191)
440 1f6b_A SAR1; gtpases, N-termin 93.0 0.042 1.4E-06 45.4 2.4 22 51-72 26-47 (198)
441 2bbs_A Cystic fibrosis transme 93.0 0.045 1.5E-06 48.5 2.7 23 51-73 65-87 (290)
442 4b3f_X DNA-binding protein smu 93.0 0.14 4.7E-06 50.8 6.5 47 33-85 192-239 (646)
443 4dkx_A RAS-related protein RAB 93.0 0.058 2E-06 45.6 3.2 21 52-72 15-35 (216)
444 1z06_A RAS-related protein RAB 93.0 0.058 2E-06 43.9 3.2 24 50-73 20-43 (189)
445 1x3s_A RAS-related protein RAB 93.0 0.059 2E-06 43.9 3.2 24 50-73 15-38 (195)
446 3rlf_A Maltose/maltodextrin im 93.0 0.055 1.9E-06 49.8 3.3 24 51-74 30-53 (381)
447 2g3y_A GTP-binding protein GEM 93.0 0.055 1.9E-06 45.5 3.0 23 50-72 37-59 (211)
448 2p5s_A RAS and EF-hand domain 93.0 0.06 2E-06 44.3 3.2 24 49-72 27-50 (199)
449 2yyz_A Sugar ABC transporter, 92.9 0.057 1.9E-06 49.4 3.3 23 51-73 30-52 (359)
450 1ihu_A Arsenical pump-driving 92.9 0.12 4E-06 50.7 5.7 36 49-84 7-42 (589)
451 3d31_A Sulfate/molybdate ABC t 92.9 0.052 1.8E-06 49.4 3.0 23 51-73 27-49 (348)
452 1pui_A ENGB, probable GTP-bind 92.9 0.032 1.1E-06 46.4 1.4 23 50-72 26-48 (210)
453 3lxx_A GTPase IMAP family memb 92.9 0.073 2.5E-06 45.4 3.8 25 48-72 27-51 (239)
454 2it1_A 362AA long hypothetical 92.9 0.058 2E-06 49.4 3.3 23 51-73 30-52 (362)
455 2yv5_A YJEQ protein; hydrolase 92.8 0.1 3.4E-06 46.5 4.7 31 36-71 156-186 (302)
456 1zbd_A Rabphilin-3A; G protein 92.8 0.06 2E-06 44.4 3.0 24 50-73 8-31 (203)
457 1g29_1 MALK, maltose transport 92.8 0.06 2.1E-06 49.5 3.3 23 51-73 30-52 (372)
458 2bcg_Y Protein YP2, GTP-bindin 92.8 0.063 2.2E-06 44.4 3.1 24 50-73 8-31 (206)
459 1v43_A Sugar-binding transport 92.8 0.061 2.1E-06 49.4 3.3 23 51-73 38-60 (372)
460 1wcv_1 SOJ, segregation protei 92.8 0.087 3E-06 45.5 4.1 36 49-84 5-41 (257)
461 2gf0_A GTP-binding protein DI- 92.8 0.089 3E-06 43.0 4.0 23 50-72 8-30 (199)
462 1zj6_A ADP-ribosylation factor 92.7 0.13 4.4E-06 41.7 4.9 24 49-72 15-38 (187)
463 3la6_A Tyrosine-protein kinase 92.7 0.25 8.7E-06 43.5 7.2 52 34-85 74-128 (286)
464 3vr4_A V-type sodium ATPase ca 92.7 0.12 4.2E-06 49.7 5.3 33 51-85 233-265 (600)
465 1byi_A Dethiobiotin synthase; 92.7 0.11 3.9E-06 43.5 4.7 27 51-77 2-29 (224)
466 1moz_A ARL1, ADP-ribosylation 92.7 0.076 2.6E-06 42.8 3.5 24 49-72 17-40 (183)
467 3iev_A GTP-binding protein ERA 92.7 0.072 2.5E-06 47.6 3.6 26 48-73 8-33 (308)
468 2atx_A Small GTP binding prote 92.7 0.066 2.3E-06 43.7 3.1 24 50-73 18-41 (194)
469 3ez2_A Plasmid partition prote 92.7 0.2 6.8E-06 46.3 6.7 28 48-75 106-134 (398)
470 2q3h_A RAS homolog gene family 92.7 0.065 2.2E-06 44.1 3.0 24 50-73 20-43 (201)
471 1oxx_K GLCV, glucose, ABC tran 92.7 0.048 1.6E-06 49.8 2.4 23 51-73 32-54 (353)
472 2j0v_A RAC-like GTP-binding pr 92.6 0.066 2.3E-06 44.5 3.1 24 50-73 9-32 (212)
473 2fv8_A H6, RHO-related GTP-bin 92.6 0.067 2.3E-06 44.4 3.1 23 50-72 25-47 (207)
474 1ega_A Protein (GTP-binding pr 92.6 0.077 2.6E-06 47.2 3.6 24 50-73 8-31 (301)
475 2qu8_A Putative nucleolar GTP- 92.6 0.082 2.8E-06 44.6 3.7 26 48-73 27-52 (228)
476 3cph_A RAS-related protein SEC 92.6 0.071 2.4E-06 44.2 3.2 24 50-73 20-43 (213)
477 2b6h_A ADP-ribosylation factor 92.6 0.062 2.1E-06 44.1 2.8 23 50-72 29-51 (192)
478 2hup_A RAS-related protein RAB 92.6 0.069 2.4E-06 44.1 3.1 24 49-72 28-51 (201)
479 3llu_A RAS-related GTP-binding 92.6 0.054 1.9E-06 44.5 2.4 23 50-72 20-42 (196)
480 2gco_A H9, RHO-related GTP-bin 92.5 0.071 2.4E-06 44.0 3.1 24 50-73 25-48 (201)
481 1jwy_B Dynamin A GTPase domain 92.5 0.072 2.4E-06 47.5 3.4 25 48-72 22-46 (315)
482 1ksh_A ARF-like protein 2; sma 92.5 0.066 2.3E-06 43.4 2.9 25 49-73 17-41 (186)
483 3q3j_B RHO-related GTP-binding 92.5 0.073 2.5E-06 44.5 3.2 24 50-73 27-50 (214)
484 2o52_A RAS-related protein RAB 92.5 0.067 2.3E-06 44.1 3.0 24 49-72 24-47 (200)
485 2j1l_A RHO-related GTP-binding 92.4 0.068 2.3E-06 44.7 2.9 23 50-72 34-56 (214)
486 2gk6_A Regulator of nonsense t 92.4 0.3 1E-05 48.1 7.9 47 34-85 184-230 (624)
487 3k9g_A PF-32 protein; ssgcid, 92.4 0.15 5E-06 44.2 5.2 37 48-85 25-62 (267)
488 3k53_A Ferrous iron transport 92.4 0.084 2.9E-06 46.1 3.5 23 51-73 4-26 (271)
489 1g3q_A MIND ATPase, cell divis 92.4 0.15 5E-06 43.2 5.0 35 51-85 3-38 (237)
490 2fu5_C RAS-related protein RAB 92.3 0.043 1.5E-06 44.3 1.5 24 50-73 8-31 (183)
491 2x77_A ADP-ribosylation factor 92.3 0.093 3.2E-06 42.6 3.6 24 49-72 21-44 (189)
492 3igf_A ALL4481 protein; two-do 92.3 0.11 3.9E-06 47.6 4.5 35 51-85 3-37 (374)
493 2qnr_A Septin-2, protein NEDD5 92.3 0.06 2E-06 48.0 2.6 21 52-72 20-40 (301)
494 2gza_A Type IV secretion syste 92.3 0.06 2.1E-06 49.3 2.6 35 51-86 176-210 (361)
495 1tf7_A KAIC; homohexamer, hexa 92.3 0.14 4.8E-06 49.3 5.3 36 50-85 281-316 (525)
496 2h17_A ADP-ribosylation factor 92.3 0.066 2.2E-06 43.3 2.6 24 50-73 21-44 (181)
497 1c9k_A COBU, adenosylcobinamid 92.3 0.068 2.3E-06 43.7 2.6 29 53-85 2-30 (180)
498 3e2i_A Thymidine kinase; Zn-bi 92.3 0.21 7.3E-06 41.9 5.7 81 50-138 28-111 (219)
499 2il1_A RAB12; G-protein, GDP, 92.3 0.074 2.5E-06 43.5 2.9 23 50-72 26-48 (192)
500 3gd7_A Fusion complex of cysti 92.2 0.076 2.6E-06 49.1 3.2 33 51-85 48-80 (390)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.5e-39 Score=320.07 Aligned_cols=247 Identities=15% Similarity=0.115 Sum_probs=194.1
Q ss_pred ccchhhHHHHHHHhcCC-CCCeEEEEEEcCCCchHHHHHHHHHH----HhhCCCCceEEEeeccccccCC-CChHHHHHH
Q 036788 30 VEVESRVEEIESLLGAG-SKDVYALGIWGIGGIGKTTIARAIFD----KISSNFEGSCCHQNVREESRRP-GGLGCLQQI 103 (352)
Q Consensus 30 vGR~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~~~~----~~~~~f~~~~~~~~~~~~s~~~-~~~~~l~~~ 103 (352)
|||+.++++|.++|..+ ..+.++|+|+||||+||||||+++|+ +++.+|+.++|+. + +..+ ++...++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-v---s~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-D---SGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-C---CCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-E---CCCCCCCHHHHHHH
Confidence 59999999999999743 34589999999999999999999997 6888999999996 3 4431 368899999
Q ss_pred HHHHHhcccc-----cCCC------HHHHHHHhCCC-cEEEEEeCCCChHHH--HHhhccC-------------------
Q 036788 104 LLSKLLQEKN-----AILD------IALSFRRLSSR-KFLIVLDDETCFKQI--KSLIGSH------------------- 150 (352)
Q Consensus 104 ll~~l~~~~~-----~~~~------~~~l~~~l~~k-~~LlVlDdv~~~~~~--~~l~~~~------------------- 150 (352)
++..++.... ...+ ...+++.++++ |+||||||||+..++ ....++.
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~ 286 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCE 286 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEE
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCe
Confidence 9999987532 1111 57888999996 999999999998864 3222221
Q ss_pred ---------------------------CchhHHHHHHHHhcCCchhHHHHhhhhcCCCHHHHHHHHHH-hcCCCChhHHH
Q 036788 151 ---------------------------GFEELSSRVIKYAQGVPLAIEILGCFLFEKEKQFWESAINK-LKRIPNLEIQK 202 (352)
Q Consensus 151 ---------------------------~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~w~~~l~~-l~~~~~~~v~~ 202 (352)
...+.+.+|+++|+|+||||+++|+.|+.++ .+|...+.. ++......+..
T Consensus 287 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~~i~~ 365 (549)
T 2a5y_B 287 FIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLVGVEC 365 (549)
T ss_dssp EEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSSTTCC
T ss_pred EEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccHHHHHH
Confidence 1234789999999999999999999998774 233333322 33224566888
Q ss_pred HHhhcccCCChhhHHHHH-----------hhhhccCCCCHHHHHHHHHhC--CCch-----------HHhHHHHhhcCCc
Q 036788 203 VLKISFDGLDDEEKNILL-----------DIACFFKWKNKDLVIKFLNAC--SFTA-----------QIGISSLVDKSLI 258 (352)
Q Consensus 203 ~l~~sy~~L~~~~k~~f~-----------~la~fp~~~~~~~l~~~~~~~--~~~~-----------~~~l~~L~~~sLl 258 (352)
++.+||+.||++.|.||+ |||+||++++.+ +.+|+++ |++. ..++++|+++||+
T Consensus 366 ~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl 443 (549)
T 2a5y_B 366 ITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGAL 443 (549)
T ss_dssp CSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSC
T ss_pred HHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCe
Confidence 999999999999999999 999999998766 7899998 6653 2389999999999
Q ss_pred eee----CCeEEeCHHHHHHHHHHHhhhc
Q 036788 259 CMH----GNNITMHDLLQEMGREIVRQES 283 (352)
Q Consensus 259 ~~~----~~~~~mHdlv~~~a~~~~~~~~ 283 (352)
+.. ..+|+|||+||+||++++.+++
T Consensus 444 ~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 444 LSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp SEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred eEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 976 2479999999999998877664
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-36 Score=325.00 Aligned_cols=257 Identities=19% Similarity=0.236 Sum_probs=205.8
Q ss_pred CCCCCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH---hhCCCCceEEEeeccccccCCCChH
Q 036788 22 PCSNKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDK---ISSNFEGSCCHQNVREESRRPGGLG 98 (352)
Q Consensus 22 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~s~~~~~~~ 98 (352)
|..+. .||||++++++|.++|...+++.++|+|+||||+||||||++++++ ...+|+..+||.+++.... ....
T Consensus 120 p~~~~-~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 196 (1249)
T 3sfz_A 120 PQRPV-IFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK--SGLL 196 (1249)
T ss_dssp CCCCS-SCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH--HHHH
T ss_pred CCCCc-eeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc--hHHH
Confidence 34445 7999999999999999766677899999999999999999999986 4666877665544543211 2334
Q ss_pred HHHHHHHHHHhcccc---cCCC-----HHHHHHHhCCC--cEEEEEeCCCChHHHHHhhccC------------------
Q 036788 99 CLQQILLSKLLQEKN---AILD-----IALSFRRLSSR--KFLIVLDDETCFKQIKSLIGSH------------------ 150 (352)
Q Consensus 99 ~l~~~ll~~l~~~~~---~~~~-----~~~l~~~l~~k--~~LlVlDdv~~~~~~~~l~~~~------------------ 150 (352)
..+..++..+..... ..+. ...++..+.++ |+||||||||+..++..+.+..
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~ 276 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGP 276 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSC
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCC
Confidence 445666666665433 1121 56677777766 9999999999999888764322
Q ss_pred ----------------------------CchhHHHHHHHHhcCCchhHHHHhhhhcCCCHHHHHHHHHHhcCCC------
Q 036788 151 ----------------------------GFEELSSRVIKYAQGVPLAIEILGCFLFEKEKQFWESAINKLKRIP------ 196 (352)
Q Consensus 151 ----------------------------~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~w~~~l~~l~~~~------ 196 (352)
...+.+.+|+++|+|+||||+++|++|+.++ ..|..+++.+....
T Consensus 277 ~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~ 355 (1249)
T 3sfz_A 277 KHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRK 355 (1249)
T ss_dssp BCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSC
T ss_pred ceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhccc
Confidence 3446789999999999999999999998866 57988888875532
Q ss_pred -----ChhHHHHHhhcccCCChhhHHHHHhhhhccCCC--CHHHHHHHHHhCCCchHHhHHHHhhcCCceee-CC---eE
Q 036788 197 -----NLEIQKVLKISFDGLDDEEKNILLDIACFFKWK--NKDLVIKFLNACSFTAQIGISSLVDKSLICMH-GN---NI 265 (352)
Q Consensus 197 -----~~~v~~~l~~sy~~L~~~~k~~f~~la~fp~~~--~~~~l~~~~~~~~~~~~~~l~~L~~~sLl~~~-~~---~~ 265 (352)
...+..+|.+||+.||+++|.||++||+||+++ +...++.+|.+++..++.++++|+++|||+.. ++ +|
T Consensus 356 ~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~ 435 (1249)
T 3sfz_A 356 SSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCY 435 (1249)
T ss_dssp TTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEE
T ss_pred ccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEE
Confidence 146999999999999999999999999999875 78899999998888889999999999999987 44 49
Q ss_pred EeCHHHHHHHHHHHhhh
Q 036788 266 TMHDLLQEMGREIVRQE 282 (352)
Q Consensus 266 ~mHdlv~~~a~~~~~~~ 282 (352)
+||++||+|+++.+.++
T Consensus 436 ~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 436 YLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ECCHHHHHHHHHHTGGG
T ss_pred EecHHHHHHHHhhhhHH
Confidence 99999999999986655
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4.8e-34 Score=283.53 Aligned_cols=250 Identities=20% Similarity=0.232 Sum_probs=193.4
Q ss_pred CCCCCCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh---hCCCC-ceEEEeeccccccCCCC
Q 036788 21 SPCSNKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI---SSNFE-GSCCHQNVREESRRPGG 96 (352)
Q Consensus 21 ~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~---~~~f~-~~~~~~~~~~~s~~~~~ 96 (352)
.|..+. .||||+.++++|.++|...+++.++|+|+||||+||||||.+++++. ..+|+ .++|+. ++. .+
T Consensus 119 ~P~~~~-~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~-----~~ 191 (591)
T 1z6t_A 119 VPQRPV-VFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGK-----QD 191 (591)
T ss_dssp CCCCCS-SCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EES-----CC
T ss_pred CCCCCC-eecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCC-----Cc
Confidence 344455 89999999999999998655668999999999999999999999853 67896 456665 432 22
Q ss_pred hHHHHHHH---HHHHhcccc----cCCC----HHHHHHHhCC--CcEEEEEeCCCChHHHHHhhccC-------------
Q 036788 97 LGCLQQIL---LSKLLQEKN----AILD----IALSFRRLSS--RKFLIVLDDETCFKQIKSLIGSH------------- 150 (352)
Q Consensus 97 ~~~l~~~l---l~~l~~~~~----~~~~----~~~l~~~l~~--k~~LlVlDdv~~~~~~~~l~~~~------------- 150 (352)
...+...+ ...++.... ...+ ...+...+.+ +++||||||+|+..+++.+.+..
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGT
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHH
Confidence 23333333 334442111 1112 4556666655 78999999999998887764222
Q ss_pred ---------------------------------CchhHHHHHHHHhcCCchhHHHHhhhhcCCCHHHHHHHHHHhcCCC-
Q 036788 151 ---------------------------------GFEELSSRVIKYAQGVPLAIEILGCFLFEKEKQFWESAINKLKRIP- 196 (352)
Q Consensus 151 ---------------------------------~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~w~~~l~~l~~~~- 196 (352)
...+.+.+|+++|+|+||||+++|+.++... ..|...+..+....
T Consensus 272 ~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~ 350 (591)
T 1z6t_A 272 SVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQF 350 (591)
T ss_dssp TCCSCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCC
T ss_pred hcCCCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHH
Confidence 2256788999999999999999999998764 47988888876432
Q ss_pred ----------ChhHHHHHhhcccCCChhhHHHHHhhhhccCC--CCHHHHHHHHHhCCCchHHhHHHHhhcCCceee--C
Q 036788 197 ----------NLEIQKVLKISFDGLDDEEKNILLDIACFFKW--KNKDLVIKFLNACSFTAQIGISSLVDKSLICMH--G 262 (352)
Q Consensus 197 ----------~~~v~~~l~~sy~~L~~~~k~~f~~la~fp~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~sLl~~~--~ 262 (352)
...+..++..||+.||++.|.||++||+||++ ++...+..+|..++.....+++.|+++|||+.. +
T Consensus 351 ~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~ 430 (591)
T 1z6t_A 351 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNG 430 (591)
T ss_dssp CCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEET
T ss_pred HHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCC
Confidence 25799999999999999999999999999976 467889999988766778899999999999976 2
Q ss_pred --CeEEeCHHHHHHHHHH
Q 036788 263 --NNITMHDLLQEMGREI 278 (352)
Q Consensus 263 --~~~~mHdlv~~~a~~~ 278 (352)
.+|+||++||+++++.
T Consensus 431 ~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 431 KSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp TEEEEECCHHHHHHHHHH
T ss_pred CccEEEEcHHHHHHHHhh
Confidence 3699999999999987
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.7e-32 Score=277.10 Aligned_cols=235 Identities=15% Similarity=0.084 Sum_probs=182.7
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHH--HhhCCCCc-eEEEeeccccccCCCChHHHHHHH
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFD--KISSNFEG-SCCHQNVREESRRPGGLGCLQQIL 104 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~--~~~~~f~~-~~~~~~~~~~s~~~~~~~~l~~~l 104 (352)
..|||+.++++|.++|... ++.++|+|+||||+||||||+++++ +++.+|+. ++|+. + +.. .+...++..+
T Consensus 129 ~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-V---s~~-~d~~~IL~~L 202 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-L---KNC-NSPETVLEML 202 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-C---CCS-SSHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-e---CCC-CCHHHHHHHH
Confidence 4699999999999999742 3478999999999999999999997 47888997 56665 4 444 6677777777
Q ss_pred HHHHhcccc------c----CC----C-HHHHHHHh---CCCcEEEEEeCCCChHHHHHhhccC----------------
Q 036788 105 LSKLLQEKN------A----IL----D-IALSFRRL---SSRKFLIVLDDETCFKQIKSLIGSH---------------- 150 (352)
Q Consensus 105 l~~l~~~~~------~----~~----~-~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~~---------------- 150 (352)
+..++.... . .+ . ...+++.+ .+||+||||||||+.++|+.+.+..
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHH
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcC
Confidence 665433211 1 00 1 34566655 7899999999999999987765322
Q ss_pred -------C--------chhHHH-------------HHHHHhcCCchhHHHHhhhhcCC--CHHHHHHHHHHhcCCCChhH
Q 036788 151 -------G--------FEELSS-------------RVIKYAQGVPLAIEILGCFLFEK--EKQFWESAINKLKRIPNLEI 200 (352)
Q Consensus 151 -------~--------~~~~~~-------------~i~~~~~glPLal~~~~~~L~~~--~~~~w~~~l~~l~~~~~~~v 200 (352)
. ..+.+. ...+.|+|+||||+++|+.|+.+ +...|... ....+
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~~~I 355 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKL 355 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SCHHH
T ss_pred CCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcC-------ChhHH
Confidence 1 011111 12345999999999999999986 67788653 35789
Q ss_pred HHHHhhcccCCChhh-HHHHHhhhhccCCC--CHHHHHHHHHhCCC-chHHhHHHHhhcCCceee--CCeEEeCHHHHHH
Q 036788 201 QKVLKISFDGLDDEE-KNILLDIACFFKWK--NKDLVIKFLNACSF-TAQIGISSLVDKSLICMH--GNNITMHDLLQEM 274 (352)
Q Consensus 201 ~~~l~~sy~~L~~~~-k~~f~~la~fp~~~--~~~~l~~~~~~~~~-~~~~~l~~L~~~sLl~~~--~~~~~mHdlv~~~ 274 (352)
..+|+.||+.||++. |+||++||+||+++ +.+.++.+|.+++. .++.++++|+++|||+.. .++|+||||++++
T Consensus 356 ~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllEL 435 (1221)
T 1vt4_I 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435 (1221)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHH
Confidence 999999999999999 99999999999875 56789999998853 467899999999999987 5689999999985
Q ss_pred H
Q 036788 275 G 275 (352)
Q Consensus 275 a 275 (352)
+
T Consensus 436 r 436 (1221)
T 1vt4_I 436 K 436 (1221)
T ss_dssp H
T ss_pred h
Confidence 4
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.64 E-value=2.4e-15 Score=138.72 Aligned_cols=239 Identities=14% Similarity=0.126 Sum_probs=145.4
Q ss_pred cCCCCCCCCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccc--cCCC
Q 036788 18 AEVSPCSNKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREES--RRPG 95 (352)
Q Consensus 18 ~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s--~~~~ 95 (352)
.+.++..++ .|+||+.+++.|.+++..+ +++.|+|++|+|||||+++++++.. .+|+. +.... ....
T Consensus 4 ~~~~~~~~~-~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~ 72 (350)
T 2qen_A 4 DLRPKTRRE-DIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHI 72 (350)
T ss_dssp CCSCCCSGG-GSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCB
T ss_pred CCCCCCChH-hcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCC
Confidence 455566666 8999999999999998732 6899999999999999999998752 45554 32221 0002
Q ss_pred ChHHHHHHHHHHHhcc--------------cc----cCCC----HHHHHHHhCC-CcEEEEEeCCCChH--------H-H
Q 036788 96 GLGCLQQILLSKLLQE--------------KN----AILD----IALSFRRLSS-RKFLIVLDDETCFK--------Q-I 143 (352)
Q Consensus 96 ~~~~l~~~ll~~l~~~--------------~~----~~~~----~~~l~~~l~~-k~~LlVlDdv~~~~--------~-~ 143 (352)
+...+...+...+... .. .... ...+.+.... ++++||+||++... + +
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~ 152 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELL 152 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHH
Confidence 4555555555543220 00 1112 2333333322 38999999996521 1 1
Q ss_pred -------------------------HHh---hc------cC-----------------------------CchhHHHHHH
Q 036788 144 -------------------------KSL---IG------SH-----------------------------GFEELSSRVI 160 (352)
Q Consensus 144 -------------------------~~l---~~------~~-----------------------------~~~~~~~~i~ 160 (352)
..+ .. .. ...+.+..++
T Consensus 153 ~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~ 232 (350)
T 2qen_A 153 ALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAV 232 (350)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 111 00 00 1234667889
Q ss_pred HHhcCCchhHHHHhhhhcC-CCHHHHHHHHHHhcCCCChhHHHHHhhcccCC---ChhhHHHHHhhhhccCCCCHHHHHH
Q 036788 161 KYAQGVPLAIEILGCFLFE-KEKQFWESAINKLKRIPNLEIQKVLKISFDGL---DDEEKNILLDIACFFKWKNKDLVIK 236 (352)
Q Consensus 161 ~~~~glPLal~~~~~~L~~-~~~~~w~~~l~~l~~~~~~~v~~~l~~sy~~L---~~~~k~~f~~la~fp~~~~~~~l~~ 236 (352)
+.|+|+|+++..++..+.. .+...+. ..+. +.+...+...+..+ ++..+.++..+|+ ...+...+..
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~ 303 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAM---KRTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRD 303 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHH---HHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHH---HHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHH
Confidence 9999999999998876532 2322221 1110 11111122222233 7899999999998 3456667766
Q ss_pred HHHhC--CCc---hHHhHHHHhhcCCceeeCCeEEe-CHHHHHHHH
Q 036788 237 FLNAC--SFT---AQIGISSLVDKSLICMHGNNITM-HDLLQEMGR 276 (352)
Q Consensus 237 ~~~~~--~~~---~~~~l~~L~~~sLl~~~~~~~~m-Hdlv~~~a~ 276 (352)
.+... +.. ...+++.|.+.+||...++.|.+ |++++.+.+
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 304 YLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 65322 222 35689999999999987777765 778887754
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.58 E-value=3.9e-14 Score=130.91 Aligned_cols=239 Identities=15% Similarity=0.110 Sum_probs=140.8
Q ss_pred cCCCCCCCCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccc--cCCC
Q 036788 18 AEVSPCSNKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREES--RRPG 95 (352)
Q Consensus 18 ~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s--~~~~ 95 (352)
.+.++..++ .|+||+.+++.|.+ +.. +++.|+|++|+|||+|+++++++.... .+|+. ..... .. .
T Consensus 5 ~~~~~~~~~-~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~~~~~~~-~ 72 (357)
T 2fna_A 5 DTSPKDNRK-DFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRKFEERNY-I 72 (357)
T ss_dssp CSSCCCSGG-GSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGTTCSC-C
T ss_pred CCCCCCCHH-HhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chhhccccC-C
Confidence 455555666 89999999999999 763 599999999999999999999987532 45664 32210 11 2
Q ss_pred ChHHHHHHHHHHHhc-------------c-------c--cc-------CCCHHHHHHHhCC---CcEEEEEeCCCChH--
Q 036788 96 GLGCLQQILLSKLLQ-------------E-------K--NA-------ILDIALSFRRLSS---RKFLIVLDDETCFK-- 141 (352)
Q Consensus 96 ~~~~l~~~ll~~l~~-------------~-------~--~~-------~~~~~~l~~~l~~---k~~LlVlDdv~~~~-- 141 (352)
+...+...+...+.. . . .. ......+.+.+.. ++++||+||++...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 334444444333311 0 0 00 1112333333321 48999999995421
Q ss_pred -------HHHHhh--------------------------------cc--C------------------------CchhHH
Q 036788 142 -------QIKSLI--------------------------------GS--H------------------------GFEELS 156 (352)
Q Consensus 142 -------~~~~l~--------------------------------~~--~------------------------~~~~~~ 156 (352)
.+..+. +. . ...+..
T Consensus 153 ~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~ 232 (357)
T 2fna_A 153 RGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY 232 (357)
T ss_dssp TTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH
T ss_pred CchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH
Confidence 111110 00 0 000112
Q ss_pred HHHHHHhcCCchhHHHHhhhhcC-CCHHHHHHH-HHHhcCCCChhHHHHHh-hcc--cCCChhhHHHHHhhhhccCCCCH
Q 036788 157 SRVIKYAQGVPLAIEILGCFLFE-KEKQFWESA-INKLKRIPNLEIQKVLK-ISF--DGLDDEEKNILLDIACFFKWKNK 231 (352)
Q Consensus 157 ~~i~~~~~glPLal~~~~~~L~~-~~~~~w~~~-l~~l~~~~~~~v~~~l~-~sy--~~L~~~~k~~f~~la~fp~~~~~ 231 (352)
..|++.|+|+|+++..++..+.. .+...|... .+... ..+...+. +.+ ..|++..+.++..+|+ . . +.
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~ 305 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KW 305 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CH
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CH
Confidence 67899999999999999877643 333333211 11110 11111121 111 1688999999999998 2 3 66
Q ss_pred HHHHHHHH-hCC--C---chHHhHHHHhhcCCceeeCCeEE-eCHHHHHHH
Q 036788 232 DLVIKFLN-ACS--F---TAQIGISSLVDKSLICMHGNNIT-MHDLLQEMG 275 (352)
Q Consensus 232 ~~l~~~~~-~~~--~---~~~~~l~~L~~~sLl~~~~~~~~-mHdlv~~~a 275 (352)
..+..... ..| . ....+++.|++.+||...++.|. -|++++++.
T Consensus 306 ~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 306 SDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 66654432 122 2 24568999999999988766777 578988764
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.49 E-value=9.7e-13 Score=124.15 Aligned_cols=239 Identities=14% Similarity=0.105 Sum_probs=141.0
Q ss_pred CCCCCCCCcccchhhHHHHHHHh-cC--CC--CCeEEEEE--EcCCCchHHHHHHHHHHHhhCC-----CCc-eEEEeec
Q 036788 21 SPCSNKNQLVEVESRVEEIESLL-GA--GS--KDVYALGI--WGIGGIGKTTIARAIFDKISSN-----FEG-SCCHQNV 87 (352)
Q Consensus 21 ~~~~~~~~~vGR~~~~~~l~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLa~~~~~~~~~~-----f~~-~~~~~~~ 87 (352)
+...++ .|+||+.+++++.++| .. .. ...+.+.| +|++|+||||||+.+++..... ++. .+|+.
T Consensus 17 ~~~~p~-~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~-- 93 (412)
T 1w5s_A 17 ENYIPP-ELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN-- 93 (412)
T ss_dssp TTCCCS-SCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE--
T ss_pred CccCCC-CCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE--
Confidence 344556 8999999999999988 41 11 23456666 9999999999999999976542 232 34444
Q ss_pred cccccCCCChHHHHHHHHHHHhccccc-CCC----HHHHHHHhC--CCcEEEEEeCCCCh--------HHHHHh---h--
Q 036788 88 REESRRPGGLGCLQQILLSKLLQEKNA-ILD----IALSFRRLS--SRKFLIVLDDETCF--------KQIKSL---I-- 147 (352)
Q Consensus 88 ~~~s~~~~~~~~l~~~ll~~l~~~~~~-~~~----~~~l~~~l~--~k~~LlVlDdv~~~--------~~~~~l---~-- 147 (352)
.... .+...+...++..++...+. ..+ ...+...+. +++++||+||++.. ..+..+ .
T Consensus 94 --~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~ 170 (412)
T 1w5s_A 94 --AFNA-PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEE 170 (412)
T ss_dssp --GGGC-CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHH
T ss_pred --CCCC-CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHh
Confidence 2233 66788888888888654331 111 344455543 67999999999653 222211 0
Q ss_pred ----c--cC---------------------------------------------------------CchhHHHHHHHHhc
Q 036788 148 ----G--SH---------------------------------------------------------GFEELSSRVIKYAQ 164 (352)
Q Consensus 148 ----~--~~---------------------------------------------------------~~~~~~~~i~~~~~ 164 (352)
+ .. ..++....|++.|+
T Consensus 171 ~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 171 IPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYG 250 (412)
T ss_dssp SCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHC
T ss_pred cccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 1 11 01234567778888
Q ss_pred ------CCchhHHHHhhhhc------C---CCHHHHHHHHHHhcCCCChhHHHHHhhcccCCChhhHHHHHhhhhcc---
Q 036788 165 ------GVPLAIEILGCFLF------E---KEKQFWESAINKLKRIPNLEIQKVLKISFDGLDDEEKNILLDIACFF--- 226 (352)
Q Consensus 165 ------glPLal~~~~~~L~------~---~~~~~w~~~l~~l~~~~~~~v~~~l~~sy~~L~~~~k~~f~~la~fp--- 226 (352)
|.|..+..+..... . -+...+...+..... ...+..++..||+..+.++..+|.+.
T Consensus 251 ~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~ 324 (412)
T 1w5s_A 251 EDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGG 324 (412)
T ss_dssp GGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTT
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcC
Confidence 99965554443211 1 123333333332210 23456678899999999999999764
Q ss_pred -CCCCHHHHHHHH-----HhCCCc------hHHhHHHHhhcCCceee------CCeEEeCHHH
Q 036788 227 -KWKNKDLVIKFL-----NACSFT------AQIGISSLVDKSLICMH------GNNITMHDLL 271 (352)
Q Consensus 227 -~~~~~~~l~~~~-----~~~~~~------~~~~l~~L~~~sLl~~~------~~~~~mHdlv 271 (352)
..++...+...+ ...|.. ...+++.|++.+||... .++|++|.+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 325 MEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp CSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 224444433222 222221 24689999999999865 3345555443
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.33 E-value=9.2e-11 Score=109.53 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=76.2
Q ss_pred CCCCcccchhhHHHHHHHhcC--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC------C-C-ceEEEeeccccccCC
Q 036788 25 NKNQLVEVESRVEEIESLLGA--GSKDVYALGIWGIGGIGKTTIARAIFDKISSN------F-E-GSCCHQNVREESRRP 94 (352)
Q Consensus 25 ~~~~~vGR~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------f-~-~~~~~~~~~~~s~~~ 94 (352)
|+ .++||+.+++++.+++.. .....+.+.|+|++|+|||+||+.+++.+... + . ..+|+. . ...
T Consensus 19 p~-~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~---~~~- 92 (384)
T 2qby_B 19 FK-EIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-C---REV- 92 (384)
T ss_dssp CS-SCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-H---HHH-
T ss_pred CC-CCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-C---ccC-
Confidence 35 899999999999987763 23345689999999999999999999976332 2 2 334443 2 222
Q ss_pred C-ChHHHHHHHHHHHhcccc-c--CC--C-HHHHHHHhCCCcEEEEEeCCCCh
Q 036788 95 G-GLGCLQQILLSKLLQEKN-A--IL--D-IALSFRRLSSRKFLIVLDDETCF 140 (352)
Q Consensus 95 ~-~~~~l~~~ll~~l~~~~~-~--~~--~-~~~l~~~l~~k~~LlVlDdv~~~ 140 (352)
. +...+...++..+..... . .. . ...+...+..++.+||+||++..
T Consensus 93 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l 145 (384)
T 2qby_B 93 GGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTL 145 (384)
T ss_dssp CSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHh
Confidence 3 677788888887743322 1 11 1 55666677776669999999653
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.26 E-value=1.2e-09 Score=101.90 Aligned_cols=112 Identities=18% Similarity=0.170 Sum_probs=75.9
Q ss_pred CCCCCCCcccchhhHHHHHHHhcC----CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC-CceEEEeeccccccCCCC
Q 036788 22 PCSNKNQLVEVESRVEEIESLLGA----GSKDVYALGIWGIGGIGKTTIARAIFDKISSNF-EGSCCHQNVREESRRPGG 96 (352)
Q Consensus 22 ~~~~~~~~vGR~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~s~~~~~ 96 (352)
...|+ .++||+.+++++.+++.. ..+..+.+.|+|++|+|||||++.+++...... ...+++. .+.. .+
T Consensus 13 ~~~p~-~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~-~~ 86 (389)
T 1fnn_A 13 SYVPK-RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIY-RN 86 (389)
T ss_dssp TCCCS-CCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTC-CS
T ss_pred ccCCC-CCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccC-CC
Confidence 34456 899999999999998863 222334899999999999999999999876553 2334443 2233 55
Q ss_pred hHHHHHHHHHHHhcccccCC-C----HHHHHHHh--CCCcEEEEEeCCCC
Q 036788 97 LGCLQQILLSKLLQEKNAIL-D----IALSFRRL--SSRKFLIVLDDETC 139 (352)
Q Consensus 97 ~~~l~~~ll~~l~~~~~~~~-~----~~~l~~~l--~~k~~LlVlDdv~~ 139 (352)
...+...++..++...+... . ...+...+ .+++.+||+|+++.
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~ 136 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFN 136 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGG
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccc
Confidence 67788888877765432111 1 23333333 35688999999965
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.25 E-value=1.1e-09 Score=101.91 Aligned_cols=113 Identities=15% Similarity=0.189 Sum_probs=78.0
Q ss_pred CCCCCCCcccchhhHHHHHHHhcCC--CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC-----C-ceEEEeeccccccC
Q 036788 22 PCSNKNQLVEVESRVEEIESLLGAG--SKDVYALGIWGIGGIGKTTIARAIFDKISSNF-----E-GSCCHQNVREESRR 93 (352)
Q Consensus 22 ~~~~~~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-----~-~~~~~~~~~~~s~~ 93 (352)
...|+ .++||+.+++++.+++... ....+.+.|+|++|+||||+|+.+++.....+ . ..+|+. ....
T Consensus 15 ~~~p~-~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~ 89 (387)
T 2v1u_A 15 DYVPD-VLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHR 89 (387)
T ss_dssp TCCCS-CCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTS
T ss_pred ccCCC-CCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcC
Confidence 34456 8999999999999998532 34456889999999999999999999764321 2 233443 2233
Q ss_pred CCChHHHHHHHHHHHhcccccCC-C----HHHHHHHh--CCCcEEEEEeCCCCh
Q 036788 94 PGGLGCLQQILLSKLLQEKNAIL-D----IALSFRRL--SSRKFLIVLDDETCF 140 (352)
Q Consensus 94 ~~~~~~l~~~ll~~l~~~~~~~~-~----~~~l~~~l--~~k~~LlVlDdv~~~ 140 (352)
.+...+...++..++...+... . ...+...+ .+++.+||+||++..
T Consensus 90 -~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l 142 (387)
T 2v1u_A 90 -ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFL 142 (387)
T ss_dssp -CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHH
T ss_pred -CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhh
Confidence 5677888888888865433111 1 34455555 356899999999754
No 11
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.25 E-value=9.7e-11 Score=109.13 Aligned_cols=113 Identities=18% Similarity=0.202 Sum_probs=74.0
Q ss_pred CCCCCCCCcccchhhHHHHHHHhcCC--CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC---ceEEEeeccccccCCC
Q 036788 21 SPCSNKNQLVEVESRVEEIESLLGAG--SKDVYALGIWGIGGIGKTTIARAIFDKISSNFE---GSCCHQNVREESRRPG 95 (352)
Q Consensus 21 ~~~~~~~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~s~~~~ 95 (352)
+...++ .|+||+.+++.+.+++... ....+.+.|+|++|+||||||+.+++.....+. ..+|+. . ... .
T Consensus 15 ~~~~p~-~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~---~~~-~ 88 (386)
T 2qby_A 15 PDYIPD-ELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-T---RQI-D 88 (386)
T ss_dssp SSCCCS-CCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-H---HHH-C
T ss_pred CccCCC-CCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-C---CCC-C
Confidence 344556 8999999999999988732 344568999999999999999999998765442 334443 1 222 4
Q ss_pred ChHHHHHHHHHHHhcccccCC-C----HHHHHHHh--CCCcEEEEEeCCCC
Q 036788 96 GLGCLQQILLSKLLQEKNAIL-D----IALSFRRL--SSRKFLIVLDDETC 139 (352)
Q Consensus 96 ~~~~l~~~ll~~l~~~~~~~~-~----~~~l~~~l--~~k~~LlVlDdv~~ 139 (352)
+...+...++..++....... . ...+...+ .+++.+||+|+++.
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~ 139 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDA 139 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHH
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhh
Confidence 455666666655543322111 1 33344444 34589999999854
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.86 E-value=2.3e-08 Score=86.41 Aligned_cols=49 Identities=27% Similarity=0.318 Sum_probs=41.5
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.++||+..++.+..++..+. ..+.+.|+|++|+||||||+.+++.....
T Consensus 24 ~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp GCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred HHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 79999999999999987432 23578999999999999999999987544
No 13
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.73 E-value=5.3e-08 Score=80.96 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=40.0
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++||+++++++.+.+.. ...+.+.|+|++|+|||+||+.+++.+.
T Consensus 23 ~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 23 PVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp CCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999874 3345678999999999999999999764
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.72 E-value=1.4e-07 Score=80.24 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=40.5
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.++|++..++.+.+++.... .+.+.|+|++|+|||++|+.+++.+...
T Consensus 18 ~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred HHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 79999999999999997443 2348999999999999999999986443
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.68 E-value=2.3e-07 Score=84.04 Aligned_cols=46 Identities=22% Similarity=0.405 Sum_probs=39.7
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|++..++.+.+++..+. .+.+.|+|++|+|||++|+.+++.+.
T Consensus 22 ~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 22 DIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp GCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 79999999999999997443 23388999999999999999999864
No 16
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.61 E-value=1.8e-07 Score=77.42 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=40.4
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++||+.+++.+.+.+.. ...+.+.|+|.+|+|||+||+.+++....
T Consensus 23 ~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 23 PVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred hhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 799999999999999874 33456789999999999999999998644
No 17
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.57 E-value=2.5e-07 Score=83.67 Aligned_cols=109 Identities=12% Similarity=0.010 Sum_probs=71.6
Q ss_pred CcccchhhHHHHHHHhcC--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC-----Cc--eEEEeeccccccCCCChH
Q 036788 28 QLVEVESRVEEIESLLGA--GSKDVYALGIWGIGGIGKTTIARAIFDKISSNF-----EG--SCCHQNVREESRRPGGLG 98 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-----~~--~~~~~~~~~~s~~~~~~~ 98 (352)
.+.||+++++++...|.. ..+..+.+.|+|++|+|||++++.+++++.... +. .+++.+ ... .+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc----~~~-~t~~ 95 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDA----LEL-AGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEET----TCC-C--H
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEec----ccc-CCHH
Confidence 489999999999988762 234567889999999999999999999875322 12 233331 122 5567
Q ss_pred HHHHHHHHHHhcccccCCC-HHHHH---HHh---CCCcEEEEEeCCCChH
Q 036788 99 CLQQILLSKLLQEKNAILD-IALSF---RRL---SSRKFLIVLDDETCFK 141 (352)
Q Consensus 99 ~l~~~ll~~l~~~~~~~~~-~~~l~---~~l---~~k~~LlVlDdv~~~~ 141 (352)
.+...|..++.+....... ...+. ..+ .+++++++||+++...
T Consensus 96 ~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 96 ALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp HHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 7888888888654332111 33333 322 4567999999998653
No 18
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.49 E-value=6.6e-06 Score=74.54 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=40.6
Q ss_pred CCCCCcccchhhHHHHHHHhcC---CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 24 SNKNQLVEVESRVEEIESLLGA---GSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 24 ~~~~~~vGR~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..+ .++|++..++.+..++.. .......+.|+|++|+|||++|+.+++...
T Consensus 10 ~~~-~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 10 TLD-EYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp STT-TCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred cHH-HhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 335 799999999998887752 112345788999999999999999999874
No 19
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.40 E-value=1.9e-06 Score=78.04 Aligned_cols=49 Identities=27% Similarity=0.312 Sum_probs=41.0
Q ss_pred CCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 25 NKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 25 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.+ .++|++..++.+.+++..+ ..+.+.++|++|+||||+|+.+++.+..
T Consensus 24 ~~-~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 24 LD-DIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp TT-TCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred HH-HhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 35 7999999999999998744 3334899999999999999999998643
No 20
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.27 E-value=7e-06 Score=75.86 Aligned_cols=48 Identities=27% Similarity=0.318 Sum_probs=40.5
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++|++..++.+.+.+..+. ....+.|+|++|+||||+|+.+++.+..
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred hccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 79999999999999887432 2347889999999999999999997643
No 21
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.19 E-value=6.4e-06 Score=73.77 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=48.9
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccchhhHHHHHHHhcCC----------CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 8 EVVNQNLKRLAEVSPCSNKNQLVEVESRVEEIESLLGAG----------SKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 8 ~i~~~v~~~~~~~~~~~~~~~~vGR~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
++++.+.+.+....+...-..++|.+..++.+.+.+... ....+.+.|+|++|+|||++|+.+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CHHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 456666655554444433228999999999998876320 12246788999999999999999999764
No 22
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=8.5e-06 Score=79.02 Aligned_cols=47 Identities=26% Similarity=0.310 Sum_probs=40.3
Q ss_pred CcccchhhHHHHHHHhcCCC---------------CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGS---------------KDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~---------------~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|++..++++.+++.... +..+.+.|+|++|+||||+|+.+++..
T Consensus 40 dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 40 QVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp GCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999987410 134689999999999999999999987
No 23
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.16 E-value=9.2e-06 Score=73.21 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=39.3
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|++..++.+.+++..+ ..+.+.++|++|+|||++|+.+++.+.
T Consensus 18 ~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp GSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 7999999999999988743 233389999999999999999999863
No 24
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=8.7e-05 Score=67.83 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=40.1
Q ss_pred CCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 25 NKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 25 ~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+ .++|++..++.+..++..+.. +.+.|+|++|+||||+|+.+++.+.
T Consensus 36 ~~-~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 36 LD-EVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TT-TCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HH-HhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35 799999999999999874432 2388999999999999999999754
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.13 E-value=5.3e-06 Score=76.55 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCcccchhhHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHH
Q 036788 3 SELVKEVVNQNLKRLAEVSPCSNKNQLVEVESRVEEIESLLGA----------GSKDVYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 3 ~~~i~~i~~~v~~~~~~~~~~~~~~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
.++++.|..++..+ .++..-+ .++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.+++
T Consensus 64 ~~~~~~i~~~i~~~---~~~~~~~-~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 64 PKMIELIMNEIMDH---GPPVNWE-DIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp HHHHHHHHHHTBCC---SCCCCGG-GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred hHHHHHHHhhcccC---CCCCCHH-HhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 44555555554332 2233335 799999999999887642 112356788999999999999999998
Q ss_pred Hhh
Q 036788 73 KIS 75 (352)
Q Consensus 73 ~~~ 75 (352)
...
T Consensus 140 ~~~ 142 (357)
T 3d8b_A 140 QSG 142 (357)
T ss_dssp HTT
T ss_pred HcC
Confidence 764
No 26
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.07 E-value=1.1e-05 Score=71.80 Aligned_cols=55 Identities=18% Similarity=0.310 Sum_probs=42.4
Q ss_pred CCCCCCCCcccchhhHHHHHHHhcCC-----------CCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 21 SPCSNKNQLVEVESRVEEIESLLGAG-----------SKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 21 ~~~~~~~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
+....+ .++|.+..+++|.+.+... ....+-+.|+|++|+|||+||+.+++....
T Consensus 12 ~~~~~~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~ 77 (285)
T 3h4m_A 12 PNVRYE-DIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA 77 (285)
T ss_dssp CCCCGG-GSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred CCCCHH-HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 333445 7999999999998877421 133456889999999999999999998643
No 27
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.07 E-value=1.5e-05 Score=66.98 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=39.5
Q ss_pred Ccccchh----hHHHHHHHhcCCCC--CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 28 QLVEVES----RVEEIESLLGAGSK--DVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 28 ~~vGR~~----~~~~l~~~L~~~~~--~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.|++... .++.+.+++..... ..+.+.|+|.+|+|||+||+.+++.........+|+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 26 DVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred hccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 6776553 34455555553222 1267889999999999999999998766544555554
No 28
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.05 E-value=7.8e-06 Score=77.65 Aligned_cols=48 Identities=25% Similarity=0.454 Sum_probs=39.7
Q ss_pred CcccchhhH---HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRV---EEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.++|.+..+ ..+...+..+ ..+.+.|+|++|+||||||+.+++.....
T Consensus 27 ~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 27 QYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp TCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred HhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 799999888 6777777633 34678999999999999999999987543
No 29
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.93 E-value=3.2e-05 Score=79.59 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=39.2
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++||+.+++.+.+.|... ...-+.++|.+|+|||++|+.+++.+.
T Consensus 171 ~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp CCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 6999999999999998743 233568999999999999999999863
No 30
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.92 E-value=2.4e-05 Score=74.22 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=56.2
Q ss_pred Ccc-cchhhH--HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHH
Q 036788 28 QLV-EVESRV--EEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQIL 104 (352)
Q Consensus 28 ~~v-GR~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~l 104 (352)
.|+ |..... ..+......... ...+.|+|++|+||||||+.+++.+...++..-++. .+...+...+
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~---------v~~~~~~~~~ 175 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY---------ITSEKFLNDL 175 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEE---------EEHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEE---------eeHHHHHHHH
Confidence 466 654443 334444433222 567899999999999999999998766554332222 1122333444
Q ss_pred HHHHhcccccCCCHHHHHHHhCCCcEEEEEeCCCC
Q 036788 105 LSKLLQEKNAILDIALSFRRLSSRKFLIVLDDETC 139 (352)
Q Consensus 105 l~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 139 (352)
...+... ....+...+..+.-+|++||++.
T Consensus 176 ~~~~~~~-----~~~~~~~~~~~~~~vL~IDEi~~ 205 (440)
T 2z4s_A 176 VDSMKEG-----KLNEFREKYRKKVDILLIDDVQF 205 (440)
T ss_dssp HHHHHTT-----CHHHHHHHHTTTCSEEEEECGGG
T ss_pred HHHHHcc-----cHHHHHHHhcCCCCEEEEeCccc
Confidence 4333221 13334444554677999999964
No 31
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.88 E-value=0.0001 Score=66.76 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=40.1
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+..++.+.+++..+. ...++.++|++|+|||++|+.+++.+.
T Consensus 27 ~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 27 ECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp TSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred HHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 79999999999999998432 345788889999999999999998873
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.87 E-value=6.7e-05 Score=61.80 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=33.2
Q ss_pred Cccc----chhhHHHHHHHhcCCC-CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVE----VESRVEEIESLLGAGS-KDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vG----R~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
+|++ ....++.+.+++..-. .....+.|+|++|+||||||+.++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 11 TYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5665 3344455555554211 2246889999999999999999999874
No 33
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.86 E-value=4e-05 Score=72.79 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=38.5
Q ss_pred CcccchhhHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGA----------GSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|.+...+.|.+.+.. .....+-+.|+|++|+|||+||+.+++..
T Consensus 135 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 135 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 799999999999887631 11234678899999999999999999986
No 34
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.86 E-value=6.3e-05 Score=65.77 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=37.9
Q ss_pred CcccchhhHHHHHHHhc---CC-------CCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLG---AG-------SKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++|.+..++.+.+++. .. ....+-+.|+|++|+|||++|+.+++....
T Consensus 7 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~ 65 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV 65 (262)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 79999998888876543 11 123456889999999999999999998753
No 35
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.85 E-value=4.3e-05 Score=68.68 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=39.0
Q ss_pred CcccchhhHHHHHHHhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGA-----------GSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+..+++|.+.+.. +-...+.+.|+|++|+|||+||+.+++...
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 799999999888877642 123346789999999999999999999864
No 36
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.82 E-value=0.0001 Score=66.77 Aligned_cols=54 Identities=19% Similarity=0.197 Sum_probs=35.9
Q ss_pred CCCCCCcc-cchhh--HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 23 CSNKNQLV-EVESR--VEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 23 ~~~~~~~v-GR~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
...+ .|+ |.... ...+..+..........+.|+|++|+||||||+.+++.....
T Consensus 8 ~~f~-~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 8 YTLE-NFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp CCSS-SCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCcc-cCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 3445 565 64433 334555554332234678899999999999999999986443
No 37
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.79 E-value=6.5e-05 Score=76.24 Aligned_cols=46 Identities=26% Similarity=0.276 Sum_probs=39.3
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++||+.+++.+.+.|... ...-+.|+|.+|+|||++|+.+++.+.
T Consensus 187 ~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp CCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 6899999999999998743 334567999999999999999999763
No 38
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.76 E-value=7e-05 Score=71.63 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=39.7
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.+|||+.+++.+.+.|.... ..-+.|+|.+|+|||++|+.+++.+..
T Consensus 181 ~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 69999999999999987422 234679999999999999999998744
No 39
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.75 E-value=8.9e-05 Score=66.55 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=38.5
Q ss_pred CcccchhhHHHHHHHhcC-------------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGA-------------GSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++|.+..++.+.+.+.. .......+.|+|++|+|||++|+.+++.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 589999999988876541 1233457889999999999999999997643
No 40
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.73 E-value=0.00023 Score=64.52 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=37.9
Q ss_pred CcccchhhHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGA----------GSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+++|.+..++.|.+.+.. .....+-+.|+|++|+|||+||+++++..
T Consensus 13 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 13 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 799999998888876531 12234678899999999999999999986
No 41
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.71 E-value=0.00031 Score=61.91 Aligned_cols=48 Identities=15% Similarity=0.154 Sum_probs=37.4
Q ss_pred CcccchhhHHHHHH-------Hhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIES-------LLG-AGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~-------~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|....++++.. .+. ......+.+.|+|++|+|||+||+.+++...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 78999888776666 232 1234567899999999999999999999854
No 42
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.69 E-value=9.2e-05 Score=69.01 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=38.8
Q ss_pred CcccchhhHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGA----------GSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+..++.+.+.+.. .....+-+.|+|.+|+|||+||+.+++...
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 799999999999987731 012246788999999999999999998754
No 43
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.69 E-value=2.1e-05 Score=62.61 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=35.9
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|+...++++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 68999999999988775322222346799999999999999999864
No 44
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00017 Score=66.95 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=39.7
Q ss_pred CcccchhhHHHHHHHhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLGA-----------GSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
++.|.++.+++|.+.+.. +-..++=+.++|+||+|||.||+++++.....
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 688999999888775541 22345678899999999999999999987654
No 45
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.61 E-value=0.00012 Score=62.69 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=39.2
Q ss_pred Ccccch---hhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 28 QLVEVE---SRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 28 ~~vGR~---~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.|+|.+ ..++.+..+.... ..+.+.|+|++|+||||||+.+++..........|+.
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 688743 5556666666532 4567889999999999999999998765433445554
No 46
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.59 E-value=3.2e-05 Score=70.53 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=40.5
Q ss_pred CcccchhhHHHHHHHhcCC---CCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAG---SKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++|++..++.+..++... ......+.|+|++|+|||++|+.+++....
T Consensus 30 ~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~ 81 (338)
T 3pfi_A 30 GYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSA 81 (338)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred HhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 7999999999999888632 233456889999999999999999987643
No 47
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.59 E-value=0.00017 Score=68.72 Aligned_cols=50 Identities=28% Similarity=0.263 Sum_probs=38.7
Q ss_pred CcccchhhHHHHHHHh---cCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLL---GAGSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L---~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.++|.+..++.+..++ ..+....+-+.++|++|+|||++|+.+++.....
T Consensus 38 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 38 GLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred hccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 7999999987655544 3333334568899999999999999999987644
No 48
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00045 Score=64.96 Aligned_cols=50 Identities=24% Similarity=0.415 Sum_probs=39.9
Q ss_pred CcccchhhHHHHHHHhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLGA-----------GSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
++.|.++.+++|.+.+.. +-..++=|.++|+||+|||.||+++++.....
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 688999998888776541 22346788899999999999999999987643
No 49
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.53 E-value=7.4e-05 Score=66.86 Aligned_cols=28 Identities=36% Similarity=0.596 Sum_probs=24.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++.+.++|++|+|||+||+.+++....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3568889999999999999999998854
No 50
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.52 E-value=0.00014 Score=65.32 Aligned_cols=49 Identities=14% Similarity=0.334 Sum_probs=39.3
Q ss_pred CcccchhhHHHHHHHhcCC------C-CCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAG------S-KDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++|.+..++.+...+... . .....+.++|.+|+|||++|+.+++....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 6899999998888877632 1 11357899999999999999999998754
No 51
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.51 E-value=0.00013 Score=67.17 Aligned_cols=50 Identities=22% Similarity=0.224 Sum_probs=39.2
Q ss_pred CcccchhhHHHH---HHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEI---ESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l---~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.|+|++...+.+ .+.+..+....+.+.|+|++|+|||++|+.+++.+...
T Consensus 45 ~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred hccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 799999997764 44444443334688999999999999999999988654
No 52
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.48 E-value=0.00025 Score=71.89 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=39.3
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+|||+.+++.+...|... ...-+.++|.+|+|||++|+.+++.+.
T Consensus 181 ~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp CCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 6999999999999998742 223478999999999999999999863
No 53
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00048 Score=64.87 Aligned_cols=50 Identities=20% Similarity=0.376 Sum_probs=40.2
Q ss_pred CcccchhhHHHHHHHhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLGA-----------GSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
++.|.++.+++|.+.+.. +-..++-|.++|++|+|||.||++++++....
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~ 270 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT 270 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC
Confidence 789999999888775431 22446788899999999999999999987654
No 54
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.00048 Score=64.61 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=39.8
Q ss_pred CcccchhhHHHHHHHhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLGA-----------GSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
++.|.++.+++|.+.+.. +-..++-+.++|+||+|||+||+++++...-.
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 688999999888776541 22345678999999999999999999987543
No 55
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.45 E-value=0.0002 Score=68.67 Aligned_cols=48 Identities=23% Similarity=0.363 Sum_probs=39.2
Q ss_pred CcccchhhHHHHHHHhcCC-----------CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAG-----------SKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+..+++|.+++... ....+-+.|+|.+|+|||++|+++++...
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 6899999999998877521 23345688999999999999999998763
No 56
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.43 E-value=0.00011 Score=67.57 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=38.5
Q ss_pred CcccchhhHHHHHHHhc----------CCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLG----------AGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+..++.|.+.+. ......+-+.|+|++|+|||+||+++++...
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 79999999999988762 1112234688999999999999999999874
No 57
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.43 E-value=0.00013 Score=66.13 Aligned_cols=49 Identities=20% Similarity=0.334 Sum_probs=39.7
Q ss_pred CcccchhhHHHHHHHhc----------CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLG----------AGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++|.+..++.|.+.+. ......+-+.|+|++|+|||+||+++++....
T Consensus 19 di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~ 77 (322)
T 3eie_A 19 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 77 (322)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC
T ss_pred HhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC
Confidence 79999999999988772 12223467899999999999999999998643
No 58
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.40 E-value=0.00022 Score=64.19 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=37.5
Q ss_pred Ccccch----hhHHHHHHHhcCCCC-CeEEEEEEcCCCchHHHHHHHHHHHhh-CCCCceEEEe
Q 036788 28 QLVEVE----SRVEEIESLLGAGSK-DVYALGIWGIGGIGKTTIARAIFDKIS-SNFEGSCCHQ 85 (352)
Q Consensus 28 ~~vGR~----~~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~~ 85 (352)
.|++.. ..++.+.+++..... ....+.|+|.+|+|||+||.++++... .....+.++.
T Consensus 125 ~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 125 DIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp GSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred hCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 566433 334455566653222 246788999999999999999999866 4433344444
No 59
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.36 E-value=0.00012 Score=64.35 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=38.3
Q ss_pred CcccchhhHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLGA----------GSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.++|.+..++.+.+.+.. +....+-+.|+|++|+|||+||+.+++.....
T Consensus 12 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 12 DMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp TSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred HhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 799999998888876541 11112347799999999999999999987543
No 60
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.00086 Score=62.55 Aligned_cols=50 Identities=28% Similarity=0.451 Sum_probs=39.5
Q ss_pred CcccchhhHHHHHHHhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLGA-----------GSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
++-|.++.+++|.+.+.. +-...+=|.++|+||+|||.||+++++.....
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~ 243 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT 243 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC
Confidence 678899998888775431 22335778999999999999999999987654
No 61
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.30 E-value=3.5e-05 Score=61.18 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=34.3
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 689999999988887652112223477999999999999999887543
No 62
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.27 E-value=0.00026 Score=64.81 Aligned_cols=45 Identities=27% Similarity=0.285 Sum_probs=37.9
Q ss_pred CcccchhhHHHHHHHh-cCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLL-GAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|.+..++.+.+++ ..+. ... +.|+|++|+||||+|+.++..+
T Consensus 15 ~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp GCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred HhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999988 5332 233 8999999999999999999965
No 63
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.24 E-value=0.00015 Score=64.88 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=38.4
Q ss_pred CcccchhhHHHHHHHhcC------------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGA------------GSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|++..++.+...+.. .......+.++|.+|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999998877652 011235678999999999999999999874
No 64
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.23 E-value=0.0011 Score=63.29 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=36.8
Q ss_pred CcccchhhHHHHHHHhc---C-------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLG---A-------GSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
+++|.+..++++.+.+. . +..-.+-+.|+|++|+|||+||+.++.+...
T Consensus 17 di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~ 75 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV 75 (476)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred HhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 79999998877776543 1 1112345889999999999999999998643
No 65
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.23 E-value=0.00025 Score=61.88 Aligned_cols=49 Identities=24% Similarity=0.282 Sum_probs=36.7
Q ss_pred CcccchhhHHHHHHHhc---CC-------CCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLG---AG-------SKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++|.+..++++.+.+. .. ....+-+.|+|++|+||||||+.+++....
T Consensus 13 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 71 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV 71 (257)
T ss_dssp GSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred HhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 79999988887766532 11 112345889999999999999999998643
No 66
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.21 E-value=0.00018 Score=65.64 Aligned_cols=48 Identities=23% Similarity=0.314 Sum_probs=38.3
Q ss_pred CcccchhhHHHHHHHhcCC---CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAG---SKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+..++.+...+..+ ......+.|+|++|+||||||+.++..+.
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 6899988888887776532 22346789999999999999999999763
No 67
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.21 E-value=0.00024 Score=62.34 Aligned_cols=48 Identities=21% Similarity=0.098 Sum_probs=34.8
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+..+..+.+.+..-......+.|+|.+|+|||++|+.+++...
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 689999999988776652112224577999999999999999998654
No 68
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.19 E-value=0.00046 Score=69.72 Aligned_cols=49 Identities=24% Similarity=0.419 Sum_probs=38.1
Q ss_pred CcccchhhHHHHHHHhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGA-----------GSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
++.|.++.+++|.+.+.. +-..++-|.++|++|+|||+||++++++...
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~ 264 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578889888888776531 1133677899999999999999999987643
No 69
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.18 E-value=0.0048 Score=56.02 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=31.9
Q ss_pred hhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 33 ESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 33 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
+...+.+.+.+..+ .-...+.++|++|+|||++|+.+++.+.
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 44566677766533 2345788999999999999999999764
No 70
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.16 E-value=0.0029 Score=56.76 Aligned_cols=42 Identities=7% Similarity=0.082 Sum_probs=32.5
Q ss_pred cchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 31 EVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 31 GR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
|-++.++.|.+.+..+. .+.+.++|++|+||||+|..+++..
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhC
Confidence 45566778888887544 6789999999999999999999863
No 71
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.12 E-value=0.0023 Score=53.99 Aligned_cols=33 Identities=18% Similarity=0.026 Sum_probs=25.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
-.++.|.|.+|+|||||+..++. . .-..++|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~--~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L--SGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H--HCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H--cCCcEEEEE
Confidence 35899999999999999999988 2 123456664
No 72
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.11 E-value=0.00026 Score=64.24 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=38.2
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++|++..++.+...+..+ .-+.++|.+|+|||+||+.+++....
T Consensus 28 ~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred ceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 7999999999988877633 25789999999999999999997654
No 73
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.07 E-value=0.00048 Score=70.20 Aligned_cols=49 Identities=24% Similarity=0.412 Sum_probs=39.4
Q ss_pred CcccchhhHHHHHHHhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGA-----------GSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++|.+..+++|.+++.. +-.....+.|+|.+|+||||||+.++.....
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 689999999998887752 2233457899999999999999999987643
No 74
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.06 E-value=0.00053 Score=63.15 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=37.6
Q ss_pred CcccchhhHHHHHHHhc-------------CCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLG-------------AGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+..++.+...+. ........+.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 47999999988887772 1111345788999999999999999999874
No 75
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.05 E-value=0.0035 Score=55.28 Aligned_cols=49 Identities=22% Similarity=0.227 Sum_probs=34.1
Q ss_pred CcccchhhHHHHHHHhc----C-------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLG----A-------GSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~----~-------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
++.|.++..++|.+.+. . +-.-.+=+.|+|++|+||||||+.++.....
T Consensus 11 di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC
Confidence 67888887777766432 0 0011122899999999999999999987643
No 76
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.04 E-value=0.00051 Score=62.63 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=39.0
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++|.+..++.|...+..+ ..+.+.++|++|+||||+|+.+++.+..
T Consensus 26 ~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 6889999999999888744 2333889999999999999999998643
No 77
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0006 Score=64.05 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=39.8
Q ss_pred CcccchhhHHHHHHHhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLGA-----------GSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
++.|.++.+++|.+.+.. +-..++-|.++|+||+|||.||+++++.....
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC
Confidence 789999999988775431 22346788999999999999999999987643
No 78
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.98 E-value=0.00037 Score=56.96 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+|.|+|++|+||||+|+.+++++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998864
No 79
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.96 E-value=0.0012 Score=59.41 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
-+++.|+|++|+|||+||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 356789999999999999999987
No 80
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.94 E-value=0.00042 Score=62.25 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=37.9
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|+...+.++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 68999999999888776322223457799999999999999999864
No 81
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.94 E-value=0.0073 Score=55.21 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=36.4
Q ss_pred hhHHHHHHHhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 34 SRVEEIESLLG-AGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 34 ~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.-...|-..|. .+=..-.++.|+|.+|+||||||.+++......-..++|+.
T Consensus 44 TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 44 TGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 33455666664 22233479999999999999999999987654333456765
No 82
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.93 E-value=0.0015 Score=54.70 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=33.7
Q ss_pred chhhHHHHHHHhcCC-CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 32 VESRVEEIESLLGAG-SKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 32 R~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
|++.++.+.+.+... .....+++|.|.+|+||||+++.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455667777766532 23457999999999999999999998764
No 83
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.92 E-value=0.0084 Score=53.70 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=32.7
Q ss_pred hhhHHHHHHHhcCC------CCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 33 ESRVEEIESLLGAG------SKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 33 ~~~~~~l~~~L~~~------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
..-.++|.+.|... .....+++|+|.+|+||||++..++..+...
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 34445566666432 1235799999999999999999999876544
No 84
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.87 E-value=0.0047 Score=55.60 Aligned_cols=51 Identities=20% Similarity=0.024 Sum_probs=36.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSK 107 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~ 107 (352)
-.++.|.|.+|+||||||..++.....+-..++|+. .. .+..++...++..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s------lE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS------LE-MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE------SS-SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE------CC-CCHHHHHHHHHHH
Confidence 358999999999999999999987544334566664 22 4556666666554
No 85
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.86 E-value=0.0006 Score=55.25 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=22.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+|+|.|++|+||||+|+.++++..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998864
No 86
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.86 E-value=0.0011 Score=63.56 Aligned_cols=59 Identities=24% Similarity=0.190 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 5 LVKEVVNQNLKRLAEVSPCSNKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 5 ~i~~i~~~v~~~~~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+.+.++.+...+. . .++|++..++.+...+..+ .-+.|+|++|+|||+||+.+++...
T Consensus 8 ~~~~~~~~l~~~l~-------~-~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 8 LLAERISRLSSSLE-------K-GLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HHHHHHHHHHHHHH-------T-TCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HHHHHHHHHHHHHH-------h-hhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 34445555555554 2 7999999999888877633 2678999999999999999998663
No 87
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.85 E-value=0.00072 Score=58.81 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=36.0
Q ss_pred CCCCCcccchhhHHHHHHHhcC--C--------CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 24 SNKNQLVEVESRVEEIESLLGA--G--------SKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 24 ~~~~~~vGR~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.-+ +++|.+....++.+.... . -.-.+-+.|+|++|+|||||++.++....
T Consensus 14 ~~~-~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 14 TFK-DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CGG-GCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHH-HhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 335 789988877766554321 0 01112389999999999999999998765
No 88
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.83 E-value=0.0012 Score=55.66 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 36 VEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 36 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
+++|.+.+........+++|.|.+|+|||||++.+...+.
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4445554442223457999999999999999999998765
No 89
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.76 E-value=0.0057 Score=59.39 Aligned_cols=48 Identities=27% Similarity=0.288 Sum_probs=35.6
Q ss_pred cccchhhHHHHHHHhc----CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 29 LVEVESRVEEIESLLG----AGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 29 ~vGR~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
++|.+.....+.+.+. ........+.++|++|+||||||+.++.....
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6787777777655432 11123468999999999999999999998754
No 90
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.76 E-value=0.00079 Score=55.38 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
+.|.|+|++|+||||+|+.+++.+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999998763
No 91
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.74 E-value=0.00085 Score=56.10 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..+|+|.|++|+||||+|+.+++.+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998874
No 92
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.73 E-value=0.001 Score=58.74 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=36.3
Q ss_pred CCCCCcccchhhHHHHHHHhcC--C--------CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 24 SNKNQLVEVESRVEEIESLLGA--G--------SKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 24 ~~~~~~vGR~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..+ +++|.+....++.+.... . -.-.+-+.|+|++|+|||||++.++....
T Consensus 38 ~~~-~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 38 TFK-DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CGG-GSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHH-HhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 335 799998887776654321 0 01112388999999999999999998775
No 93
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.72 E-value=0.0021 Score=57.17 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=25.0
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 47 SKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 47 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.....+|+|.|.+|+||||||+.+...+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34567999999999999999999988654
No 94
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.72 E-value=0.0017 Score=53.46 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.+|.|.|++|+||||+|+.+++.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998764
No 95
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.70 E-value=0.014 Score=54.77 Aligned_cols=29 Identities=28% Similarity=0.265 Sum_probs=25.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
...+|.++|.+|+||||++..++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999999877654
No 96
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.69 E-value=0.001 Score=54.22 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh
Confidence 57899999999999999999873
No 97
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.68 E-value=0.0018 Score=51.57 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=27.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
-..++|+|.+|+|||||++.++......-...+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 458899999999999999999998754311245554
No 98
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.68 E-value=0.0013 Score=60.71 Aligned_cols=48 Identities=15% Similarity=0.136 Sum_probs=37.0
Q ss_pred CcccchhhHHHHHHHhc----C------------------------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLG----A------------------------GSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~----~------------------------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+..++.|...+. . .......+.++|++|+|||++|+.+++...
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 68999988888877661 0 011234688999999999999999999874
No 99
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.67 E-value=0.00095 Score=54.01 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.+|+|.|++|+||||+|+.+ ++
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47899999999999999999 44
No 100
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.66 E-value=0.0094 Score=54.32 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=32.5
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC------CCCceEEEe
Q 036788 38 EIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS------NFEGSCCHQ 85 (352)
Q Consensus 38 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~~~ 85 (352)
.|-..|..+=..-.++.|+|.+|+||||||..++..... .-..++|+.
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 344444322234579999999999999999999987432 123556765
No 101
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.65 E-value=0.00067 Score=62.35 Aligned_cols=27 Identities=26% Similarity=0.112 Sum_probs=23.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
..++|+|.+|+|||||++.+++.+...
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 588999999999999999999876443
No 102
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.62 E-value=0.0049 Score=58.24 Aligned_cols=30 Identities=27% Similarity=0.651 Sum_probs=24.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCCCCce
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKISSNFEGS 81 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~ 81 (352)
.++|+|.+|+|||||+..+......++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 588999999999999999998765544433
No 103
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.59 E-value=0.0017 Score=53.62 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
..+|.|.|++|+||||+|+.+++..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 104
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.58 E-value=0.001 Score=60.59 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=35.3
Q ss_pred CCCCCcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 24 SNKNQLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 24 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.-+ .++|.+...+.+...+.... ..-+.|+|.+|+|||++|+.+++...
T Consensus 22 ~f~-~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFS-AIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGG-GSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred Cch-hccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 334 79999886665544433221 12388999999999999999999764
No 105
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.58 E-value=0.0013 Score=53.17 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..++|+|.|++|+||||+|+.+++++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999998764
No 106
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.56 E-value=0.0019 Score=55.95 Aligned_cols=41 Identities=20% Similarity=0.088 Sum_probs=29.2
Q ss_pred hhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 34 SRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 34 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
..+.++.............|+|.|++|+||||+|+.+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444444333223345789999999999999999999875
No 107
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.52 E-value=0.0016 Score=53.57 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=23.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.+|.|.|++|+||||+++.+++....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999998764
No 108
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.51 E-value=0.0029 Score=52.86 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
...+|+|.|++|+||||+++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 347999999999999999999999875
No 109
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.51 E-value=0.0012 Score=53.53 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+|+|+|++|+||||+++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998754
No 110
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.50 E-value=0.0019 Score=58.77 Aligned_cols=49 Identities=22% Similarity=0.346 Sum_probs=33.4
Q ss_pred ccchhhHHHHHHHhc--CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 30 VEVESRVEEIESLLG--AGSKDVYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 30 vGR~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
|+.+...+.+.+.+. ...+....+.|+|++|+||||+++.++..+.-.|
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 334445555555553 1234456789999999999999999998754333
No 111
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.49 E-value=0.0042 Score=55.17 Aligned_cols=26 Identities=35% Similarity=0.462 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
...++.|.|++|+||||+|+.+.++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998875
No 112
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.49 E-value=0.0011 Score=54.33 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+.|.|+|++|+||||+++.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999876
No 113
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.48 E-value=0.0029 Score=52.10 Aligned_cols=27 Identities=33% Similarity=0.401 Sum_probs=24.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
..+|.|.|++|+||||+++.++..+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999998654
No 114
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.47 E-value=0.02 Score=51.30 Aligned_cols=78 Identities=9% Similarity=0.044 Sum_probs=46.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCCC--CceEEEeeccccccCCCChHHHHHHHHHHHhccccc-----CCCHHH----
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKISSNF--EGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKNA-----ILDIAL---- 120 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~-----~~~~~~---- 120 (352)
++-|+|.+|+||||||.+++......+ ..++|++ .... .... .++.++....+ ..+.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId----~E~s-~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~ 99 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD----SEFG-ITPA-----YLRSMGVDPERVIHTPVQSLEQLRID 99 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE----SSCC-CCHH-----HHHHTTCCGGGEEEEECSBHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe----ccch-hhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHH
Confidence 789999999999999999988765442 3456765 1122 3221 24555544331 111222
Q ss_pred HHHHh----CCCcEEEEEeCCCC
Q 036788 121 SFRRL----SSRKFLIVLDDETC 139 (352)
Q Consensus 121 l~~~l----~~k~~LlVlDdv~~ 139 (352)
+.+.+ .++.-++|+|-+..
T Consensus 100 i~~~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 100 MVNQLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHHHHTCCTTCCEEEEEECSTT
T ss_pred HHHHHHHhhccCceEEEEecccc
Confidence 22222 45678999999853
No 115
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.46 E-value=0.0033 Score=52.62 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=24.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
.+|+|.|++|+||||+|+.+++.+...+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5899999999999999999999876543
No 116
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.45 E-value=0.0016 Score=53.70 Aligned_cols=24 Identities=38% Similarity=0.346 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
-.+++|.|++|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999865
No 117
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.45 E-value=0.0014 Score=54.85 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
..+|+|.|++|+||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999886
No 118
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.44 E-value=0.0029 Score=52.95 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=30.7
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 35 RVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 35 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
-+..+..++.. -+....+.|+|+||+||||+|.++++.+..
T Consensus 44 f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 44 FLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35566666652 223346899999999999999999998754
No 119
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.43 E-value=0.0019 Score=56.34 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=22.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++.|.|++|+||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 120
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.42 E-value=0.0016 Score=54.26 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.|+|.|++|+||||+++.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999865
No 121
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.42 E-value=0.0098 Score=53.80 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
...+++|+|+.|+||||+++.++..++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45799999999999999999999876543
No 122
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.41 E-value=0.0014 Score=53.82 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
++|+|.|++|+||||+|+.++++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998764
No 123
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.40 E-value=0.0023 Score=52.84 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=22.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+|+|.|++|+||||+|+.+++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998875
No 124
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.38 E-value=0.003 Score=52.78 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
..+++|.|++|+||||+++.++...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999876
No 125
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.38 E-value=0.0017 Score=52.91 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.|.|.|++|+||||+|+.++++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 126
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.37 E-value=0.023 Score=53.27 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=25.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
...++.++|.+|+||||++..++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999999876554
No 127
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.37 E-value=0.0084 Score=54.08 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
...+++|+|.+|+||||++..++..+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36799999999999999999999876544
No 128
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.36 E-value=0.0029 Score=52.83 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=23.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
....+|+|.|++|+||||+|+.+++..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999999874
No 129
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.36 E-value=0.0057 Score=55.15 Aligned_cols=49 Identities=22% Similarity=0.279 Sum_probs=34.6
Q ss_pred CcccchhhHHHHHHHhcCC--CCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAG--SKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
-++|-...+..+...+... ...+.+++|.|..|+|||||++.+...+..
T Consensus 68 ~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 68 FYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred HhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3455555555555444322 345679999999999999999999887653
No 130
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.34 E-value=0.0026 Score=51.71 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
..+++|.|++|+||||+++.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998875
No 131
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.34 E-value=0.0013 Score=54.50 Aligned_cols=29 Identities=28% Similarity=0.516 Sum_probs=23.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFE 79 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~ 79 (352)
|.|.|+|++|+|||||++.+..+..+.|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 45889999999999999999887654443
No 132
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.33 E-value=0.0027 Score=52.12 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..|+|.|++|+||||+|+.+++...
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999998763
No 133
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.32 E-value=0.0024 Score=52.77 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..+|+|.|++|+||||+|+.+++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998763
No 134
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.32 E-value=0.0021 Score=52.73 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
++++|+|++|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999998654
No 135
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.31 E-value=0.0023 Score=53.02 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=22.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+|+|.|++|+||||+|+.+++...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998764
No 136
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.31 E-value=0.0034 Score=51.68 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..+|+|.|++|+||||+|+.+++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998763
No 137
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.30 E-value=0.0094 Score=53.29 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=27.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
..+++|+|+.|+||||+++.++..+... .+.+.+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~ 134 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 134 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 4699999999999999999999876543 3444443
No 138
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.30 E-value=0.0021 Score=52.11 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+|.|.|++|+||||+|+.+++.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998764
No 139
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.29 E-value=0.004 Score=50.64 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=26.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCC-CCceE
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSN-FEGSC 82 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~ 82 (352)
..++++|.|..|+|||||+..+...+..+ +...+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ 37 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGT 37 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeE
Confidence 35789999999999999999999987544 44433
No 140
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.29 E-value=0.0014 Score=53.60 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=18.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..+|.|.|++|+||||+|+.+++.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999988754
No 141
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.29 E-value=0.0024 Score=52.55 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
...|+|+|++|+||||+++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999987
No 142
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.29 E-value=0.003 Score=52.71 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
...|+|.|++|+||||+|+.+++...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998764
No 143
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.28 E-value=0.017 Score=54.55 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=35.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEEeeccccccCCCChHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSN-FEGSCCHQNVREESRRPGGLGCLQQILLSK 107 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~ 107 (352)
+.++|.|.+|+|||+|+..+++.+... -+..+|.- +++-. ....++.+++...
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~-iGER~---rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-VGERT---REGNDLYHEMIES 207 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE-ESCCH---HHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE-CCCcc---hHHHHHHHHhhhc
Confidence 578999999999999999999986433 34444443 33222 3355666666543
No 144
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.28 E-value=0.0028 Score=55.06 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=24.0
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
....+|+|.|++|+||||+|+.+.+.+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4467899999999999999999998754
No 145
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.28 E-value=0.0038 Score=52.44 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=24.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
..+|+|.|++|+||||+|+.+++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999987543
No 146
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.27 E-value=0.0027 Score=51.13 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.|+|.|++|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 147
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.26 E-value=0.0029 Score=55.30 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..+|.|.|++|+||||+|+.+++.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 148
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.24 E-value=0.02 Score=54.11 Aligned_cols=52 Identities=15% Similarity=-0.065 Sum_probs=36.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEEeeccccccCCCChHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSN-FEGSCCHQNVREESRRPGGLGCLQQILLSKL 108 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l 108 (352)
-.++.|.|.+|+||||||..++..+... -..++|+. .. -+...+...++...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s------lE-~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS------LE-MPAAQLTLRMMCSE 252 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE------SS-SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE------CC-CCHHHHHHHHHHHH
Confidence 3589999999999999999999876532 23455554 22 44567777766443
No 149
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.24 E-value=0.0062 Score=52.91 Aligned_cols=27 Identities=33% Similarity=0.359 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
...++.|.|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999998764
No 150
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.23 E-value=0.0031 Score=52.49 Aligned_cols=26 Identities=35% Similarity=0.366 Sum_probs=23.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
....+|+|.|++|+||||+|+.+++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34679999999999999999999875
No 151
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.20 E-value=0.003 Score=53.50 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
...|.|.|++|+||||+|+.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999998764
No 152
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.19 E-value=0.01 Score=53.91 Aligned_cols=51 Identities=18% Similarity=0.058 Sum_probs=36.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKL 108 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l 108 (352)
.++.|.|.+|+||||||..++..+...-..++|+. .. -+..++...++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lE-ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LE-MSAEQLALRALSDL 97 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SS-SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CC-CCHHHHHHHHHHHh
Confidence 58999999999999999999987544323445543 23 55677777776544
No 153
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.19 E-value=0.005 Score=57.92 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=37.6
Q ss_pred CcccchhhHHHHHHHhcC---------C---CCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLGA---------G---SKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~---------~---~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.++|.+...+.+...+.. . ....+-+.++|++|+|||++|+.++......
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 789999888888665521 0 0123568899999999999999999987543
No 154
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.19 E-value=0.0023 Score=53.64 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..+++|+|++|+||||+++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46889999999999999999998764
No 155
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.19 E-value=0.0031 Score=51.96 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
.+++|.|++|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999986
No 156
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.18 E-value=0.0099 Score=54.42 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=30.0
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 37 EEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 37 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
..+.+.+.....+..+|+|+|.+|+|||||+..++.....
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3444444433456789999999999999999999887543
No 157
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.18 E-value=0.0033 Score=51.85 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
+|+|.|++|+||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999874
No 158
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.15 E-value=0.03 Score=52.63 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhcCCCC---CCCCCCcccchhhHHHHHHHhcCC-------CCCeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 4 ELVKEVVNQNLKRLAEVSP---CSNKNQLVEVESRVEEIESLLGAG-------SKDVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 4 ~~i~~i~~~v~~~~~~~~~---~~~~~~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
+.++++++.+.++...... ..+...++ ..-.+++.++|... ....++|.++|.+|+||||++..++..
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 46 PVVREFINRVKEKAVGHEVNKSLTPGQEFV--KIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHHHHHHHSSSCCCSSSCTTTTTH--HHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCChHHHHH--HHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4556666666554332211 11110121 23345666666532 134689999999999999999999987
Q ss_pred hhCC
Q 036788 74 ISSN 77 (352)
Q Consensus 74 ~~~~ 77 (352)
+...
T Consensus 124 l~~~ 127 (433)
T 2xxa_A 124 LREK 127 (433)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7654
No 159
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.15 E-value=0.0022 Score=52.89 Aligned_cols=28 Identities=29% Similarity=0.543 Sum_probs=24.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
++++|.|+.|+|||||++.+.......|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 4789999999999999999998765444
No 160
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.15 E-value=0.013 Score=53.73 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=27.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
..+++|+|..|+||||+++.++..+... ...+.+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~ 191 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 191 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEe
Confidence 5799999999999999999999976543 3444443
No 161
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.14 E-value=0.003 Score=52.98 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=24.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
..+|+|.|++|+||||+|+.+++.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999976543
No 162
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.14 E-value=0.0035 Score=60.04 Aligned_cols=48 Identities=23% Similarity=0.339 Sum_probs=35.9
Q ss_pred CcccchhhHHHHHHHhc---CC-------CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLG---AG-------SKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
+++|.+..+.++.+... .. -.-.+-+.|+|++|+|||+||+.++....
T Consensus 32 dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 79999988877766543 11 01123489999999999999999998764
No 163
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.14 E-value=0.0054 Score=55.19 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=28.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
++.++|+|+|-|||||||.+..++--+...-..+.-+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4679999999999999999999988765443334444
No 164
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.13 E-value=0.0034 Score=53.26 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+|+|+|++|+||||+|+.++....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988653
No 165
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.10 E-value=0.005 Score=52.25 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=24.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
...++|.|.|+||+||||.|+.++++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999875
No 166
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.09 E-value=0.0039 Score=64.02 Aligned_cols=49 Identities=14% Similarity=0.335 Sum_probs=38.1
Q ss_pred CcccchhhHHHHHHHhcCC-----C--CCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAG-----S--KDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~-----~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++|.+..++.+...+... + .....+.|+|.+|+|||++|+.+++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4799999888887776521 1 12357899999999999999999998643
No 167
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.09 E-value=0.0032 Score=52.54 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
.+|+|.|++|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 168
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.09 E-value=0.0068 Score=61.37 Aligned_cols=49 Identities=20% Similarity=0.358 Sum_probs=38.5
Q ss_pred CcccchhhHHHHHHHhcCCC-------CCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAGS-------KDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++|.+..++.+...+.... .....+.++|++|+|||++|+.+++....
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~ 547 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG 547 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 68999999988887765211 11237899999999999999999998744
No 169
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.07 E-value=0.0068 Score=51.12 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=33.6
Q ss_pred ccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 30 VEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 30 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
-+.++..+.+...+. ....++++|+|.+|+|||||+.++.......+
T Consensus 12 ~~~~~~~~~~~~~~~--~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~ 58 (221)
T 2wsm_A 12 AENKRLAEKNREALR--ESGTVAVNIMGAIGSGKTLLIERTIERIGNEV 58 (221)
T ss_dssp HHHHHHHHHHHHHHH--HHTCEEEEEEECTTSCHHHHHHHHHHHHTTTS
T ss_pred hhcHHHHHHHHHhhc--ccCceEEEEEcCCCCCHHHHHHHHHHHhccCC
Confidence 334444555555553 23568999999999999999999998765443
No 170
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.06 E-value=0.0038 Score=52.53 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
..+++|+|++|+|||||++.+......
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 458999999999999999999987543
No 171
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.05 E-value=0.012 Score=49.73 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=30.4
Q ss_pred hhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 34 SRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 34 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
+..+.+...+. ......|+|+|.+|+|||||+.++.......
T Consensus 24 ~~a~~~r~~~~--~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 24 RLADKNRKLLN--KHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHHH--HTTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHH--hCCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 33444555443 2356789999999999999999999875443
No 172
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.05 E-value=0.0036 Score=52.16 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+++|.|+.|+|||||++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 489999999999999999998764
No 173
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.04 E-value=0.018 Score=54.35 Aligned_cols=51 Identities=20% Similarity=0.024 Sum_probs=34.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSK 107 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~ 107 (352)
-.++.|.|.||+||||||..++..+...-..++|+. .. -+..++...++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS------lE-ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS------LE-MGKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC------SS-SCTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE------CC-CCHHHHHHHHHHH
Confidence 358999999999999999999987644323445553 22 3345555555543
No 174
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.04 E-value=0.0048 Score=51.76 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
...+++|.|..|+|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998754
No 175
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.03 E-value=0.0037 Score=52.12 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+++|.|++|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998765
No 176
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.03 E-value=0.019 Score=51.11 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
...+++++|.+|+||||++..++....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356999999999999999999998765
No 177
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.03 E-value=0.0042 Score=52.37 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.|+|.|++|+||||+|+.++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 178
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.02 E-value=0.014 Score=53.45 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCC----CCcccchhhHHHHHHHhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC
Q 036788 5 LVKEVVNQNLKRLAEVSPCSNK----NQLVEVESRVEEIESLLG-AGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFE 79 (352)
Q Consensus 5 ~i~~i~~~v~~~~~~~~~~~~~----~~~vGR~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~ 79 (352)
-++....++.+......+..-. ...-+...-...|-..|. .+=..-+++.|+|.+|+||||||.+++......-.
T Consensus 13 ~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~ 92 (356)
T 1u94_A 13 ALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK 92 (356)
T ss_dssp HHHHHHHHHHHHHCTTSSCCTTCCCBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhCCCCceEccccccccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 3455555665554432211111 022233333455555554 22233468999999999999999999987654434
Q ss_pred ceEEEe
Q 036788 80 GSCCHQ 85 (352)
Q Consensus 80 ~~~~~~ 85 (352)
.++|+.
T Consensus 93 ~vlyid 98 (356)
T 1u94_A 93 TCAFID 98 (356)
T ss_dssp CEEEEE
T ss_pred eEEEEe
Confidence 567775
No 179
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.01 E-value=0.016 Score=52.96 Aligned_cols=81 Identities=16% Similarity=0.131 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhcCCCCCC----CCCCcccchhhHHHHHHHhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC
Q 036788 5 LVKEVVNQNLKRLAEVSPCS----NKNQLVEVESRVEEIESLLG-AGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFE 79 (352)
Q Consensus 5 ~i~~i~~~v~~~~~~~~~~~----~~~~~vGR~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~ 79 (352)
.+++....+.+......+.. .....-+...-...|-..|. .+=..-.++.|+|.+|+||||||.+++......-.
T Consensus 11 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~ 90 (349)
T 2zr9_A 11 ALELAMAQIDKNFGKGSVMRLGEEVRQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG 90 (349)
T ss_dssp HHHHHHHHHHHHHCTTSSCCTTCCCCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhCCCCceeccccccccCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 45566666655554332111 11022233333455555554 22233468999999999999999999987654434
Q ss_pred ceEEEe
Q 036788 80 GSCCHQ 85 (352)
Q Consensus 80 ~~~~~~ 85 (352)
.++|+.
T Consensus 91 ~vlyi~ 96 (349)
T 2zr9_A 91 IAAFID 96 (349)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 556665
No 180
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.01 E-value=0.0044 Score=51.22 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.|+|.|+.|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999998644
No 181
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.99 E-value=0.0053 Score=51.04 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
...+|+|+|+.|+||||+|+.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998864
No 182
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.99 E-value=0.0048 Score=51.69 Aligned_cols=25 Identities=32% Similarity=0.611 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
...+|+|+|++|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998864
No 183
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.98 E-value=0.0037 Score=53.30 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
...|+|.|++|+||||+|+.+++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999875
No 184
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.98 E-value=0.0037 Score=53.01 Aligned_cols=26 Identities=27% Similarity=0.157 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
...|.|.|++|+||||+|+.+++.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 185
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.97 E-value=0.0044 Score=53.52 Aligned_cols=26 Identities=27% Similarity=0.357 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..+++|.|++|+|||||++.+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 186
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.92 E-value=0.02 Score=54.25 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=35.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC-CCCceEEEeeccccccCCCChHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISS-NFEGSCCHQNVREESRRPGGLGCLQQILLS 106 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~ 106 (352)
+.++|.|.+|+|||+|+..+++.+.. +-+..+|+- +++ .+....++.+++..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~-iGE---R~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VGE---RTREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE-ESC---CSHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE-ccc---CcHHHHHHHHhhhc
Confidence 47899999999999999999998644 334555553 333 21335566666654
No 187
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.92 E-value=0.0046 Score=51.74 Aligned_cols=22 Identities=50% Similarity=0.620 Sum_probs=20.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
.+|+|.|++|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 188
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.92 E-value=0.0055 Score=50.29 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|+|..|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 189
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.91 E-value=0.0027 Score=53.39 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
+|+|.|++|+||||+++.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987653
No 190
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.90 E-value=0.0049 Score=51.96 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.|+|.|++|+||||+|+.++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 191
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.90 E-value=0.0061 Score=49.72 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
-.+|+|.|+.|+||||+++.+...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35889999999999999999998764
No 192
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.89 E-value=0.0044 Score=51.71 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++++|+|+.|+|||||++.+.....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998754
No 193
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.89 E-value=0.0072 Score=51.80 Aligned_cols=35 Identities=17% Similarity=0.007 Sum_probs=26.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.++.|.|.+|+||||||.+++......-..++|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 58999999999999999998876543333556654
No 194
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.86 E-value=0.0043 Score=52.49 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=21.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
..|.|.|++|+||||+|+.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876
No 195
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.84 E-value=0.0063 Score=51.19 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..+|.|.|++|+||||+++.+++.+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998764
No 196
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.83 E-value=0.023 Score=53.80 Aligned_cols=50 Identities=16% Similarity=0.085 Sum_probs=34.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEEeeccccccCCCChHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSN-FEGSCCHQNVREESRRPGGLGCLQQILLS 106 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~s~~~~~~~~l~~~ll~ 106 (352)
-.++.|.|.+|+||||||..++..+... -..++|+. .. .+...+...++.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s------~E-~s~~~l~~r~~~ 253 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS------LE-MSAQQLVMRMLC 253 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE------SS-SCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CC-CCHHHHHHHHHH
Confidence 3589999999999999999999876432 22455554 22 344566655543
No 197
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.81 E-value=0.0014 Score=60.27 Aligned_cols=38 Identities=24% Similarity=0.120 Sum_probs=27.7
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 38 EIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 38 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.+++.+..- ..-+.++|+|.+|+|||+|+..+++.+..
T Consensus 164 raID~l~Pi-grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 164 RLIDLFAPI-GKGQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp HHHHHHSCC-BTTCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred hhhhhcccc-cCCceEEEecCCCCChhHHHHHHHHHHhh
Confidence 455555421 22347899999999999999999997653
No 198
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.80 E-value=0.0055 Score=53.22 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..+|+|.|+.|+||||+++.+++++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999998764
No 199
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.79 E-value=0.013 Score=49.61 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
-.+++|.|.+|+|||||++.++....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46999999999999999999987543
No 200
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.79 E-value=0.0053 Score=51.09 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=22.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
..|+|.|++|+||||+++.+.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998876
No 201
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.78 E-value=0.02 Score=54.47 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=27.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
..+++|+|..|+|||||++.++..+... .+.+++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 5699999999999999999999876543 3445553
No 202
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.77 E-value=0.0076 Score=60.92 Aligned_cols=49 Identities=22% Similarity=0.300 Sum_probs=37.1
Q ss_pred CcccchhhHHHHHHHhcCC-----------CCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 28 QLVEVESRVEEIESLLGAG-----------SKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.+.|.++..++|.+.+... ....+-+.++|++|+|||.+|+++++....
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC
Confidence 5778888888887765421 122456789999999999999999987643
No 203
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.76 E-value=0.011 Score=52.88 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=28.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
...+++|+|++|+||||+++.++...... ...+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 35699999999999999999999877654 3445554
No 204
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.75 E-value=0.005 Score=50.04 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=18.3
Q ss_pred EEEEEEcCCCchHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAI 70 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~ 70 (352)
.+++|+|+.|+|||||++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999963
No 205
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.75 E-value=0.0096 Score=58.63 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=38.7
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.++|.+..++.+...+..+ ..+.|+|++|+||||||+.++......
T Consensus 42 ~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred eEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 5899999998888887744 378999999999999999999976443
No 206
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.74 E-value=0.0042 Score=53.95 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..|+|.|++|+||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998764
No 207
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.73 E-value=0.011 Score=50.43 Aligned_cols=36 Identities=14% Similarity=0.010 Sum_probs=27.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhC------CCCceEEEe
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISS------NFEGSCCHQ 85 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~~~ 85 (352)
-.++.|.|.+|+|||||+..++..... .-..++|+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 358999999999999999999986322 123556665
No 208
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.73 E-value=0.0066 Score=50.64 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=22.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
+|+|.|++|+||||+|+.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999998764
No 209
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.72 E-value=0.0075 Score=51.07 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=26.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++|.|.+|+|||||++.++......-..++|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 58999999999999999999976543222344443
No 210
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.71 E-value=0.012 Score=51.39 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=27.4
Q ss_pred HHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 39 IESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 39 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+..||....+....+.++|+||+|||.+|.++++.+
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 555555332334579999999999999999999863
No 211
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.70 E-value=0.0049 Score=51.44 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
++++|+|+.|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4789999999999999999988654
No 212
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.69 E-value=0.0076 Score=50.89 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 213
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.67 E-value=0.007 Score=50.99 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.|+|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 214
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.67 E-value=0.0072 Score=51.40 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.|+|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999876
No 215
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.67 E-value=0.0078 Score=51.51 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
...|.|.|++|+||||+|+.+++.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998864
No 216
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.66 E-value=0.0071 Score=53.49 Aligned_cols=24 Identities=38% Similarity=0.783 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
...+|+|.|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999983
No 217
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.61 E-value=0.006 Score=61.77 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=37.7
Q ss_pred CcccchhhHHHHHHHhcCC-------CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAG-------SKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|.+..++.+...+... ......+.++|++|+|||++|+.+++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 6889999988887766521 11234789999999999999999999873
No 218
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.58 E-value=0.008 Score=54.48 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+|+|.|++|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 219
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.57 E-value=0.028 Score=51.56 Aligned_cols=54 Identities=24% Similarity=0.206 Sum_probs=36.6
Q ss_pred chhhHHHHHHHhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 32 VESRVEEIESLLG-AGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 32 R~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
...-...|-..|. .+=..-.++.|+|.+|+||||||.+++......-..++|+.
T Consensus 55 i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 55 VSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp ECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 3334555666554 22223458899999999999999999987654434567775
No 220
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.54 E-value=0.0073 Score=51.80 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..+|+|.|++|+||||+|+.+++.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998764
No 221
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.54 E-value=0.029 Score=50.55 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=27.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC------CCceEEEe
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSN------FEGSCCHQ 85 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~------f~~~~~~~ 85 (352)
-.++.|+|.+|+||||||.+++...... -..++|+.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3589999999999999999999875332 23556665
No 222
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.53 E-value=0.013 Score=50.31 Aligned_cols=36 Identities=25% Similarity=0.075 Sum_probs=25.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh-hCCCCceEEEe
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI-SSNFEGSCCHQ 85 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~-~~~f~~~~~~~ 85 (352)
-.++.|.|.+|+|||+||.+++... ...-..++|+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 3589999999999999999987653 33233444543
No 223
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.53 E-value=0.009 Score=50.24 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+|.|.|+||+||||.|+.++++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999875
No 224
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.52 E-value=0.017 Score=51.45 Aligned_cols=35 Identities=23% Similarity=0.131 Sum_probs=27.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
..+++++|.+|+||||++..++......-..+.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57899999999999999999998765442333443
No 225
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.51 E-value=0.018 Score=48.98 Aligned_cols=27 Identities=15% Similarity=0.036 Sum_probs=22.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
-.|.+.|.||+||||+|..++......
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 347789999999999999999976544
No 226
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.49 E-value=0.0096 Score=51.36 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
...+++|.|..|+|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998865
No 227
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.48 E-value=0.011 Score=50.80 Aligned_cols=35 Identities=26% Similarity=0.116 Sum_probs=25.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh-CCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS-SNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~~ 85 (352)
.+++|.|++|+|||||++.++.... ..-..++++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5899999999999999999985322 2223445554
No 228
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.47 E-value=0.0087 Score=53.86 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=22.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
++|.|+|++|+||||||..++++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 229
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.46 E-value=0.011 Score=53.13 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=24.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
....+++|.|..|+|||||++.+...+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34579999999999999999999987653
No 230
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.46 E-value=0.021 Score=48.73 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=24.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
....|+|.|++|+||||+++.+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999998765
No 231
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.44 E-value=0.0084 Score=50.29 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=22.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+++|.|+.|+|||||++.+.....
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999988653
No 232
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.44 E-value=0.029 Score=49.69 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=26.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCC-ceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFE-GSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~ 85 (352)
.+++|.|.+|+|||||++.++..+...-. .++|+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 58999999999999999999987654323 344543
No 233
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.42 E-value=0.02 Score=53.69 Aligned_cols=86 Identities=9% Similarity=0.057 Sum_probs=48.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCC---ceEEEeeccccccCCCChHHHHHHHHHHHhcccc----cCCC------
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFE---GSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN----AILD------ 117 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~~~~------ 117 (352)
+.++|.|.+|+|||+|+..++++...+.+ ..+.+..+++-. ..+.++.+.+...=..... ...+
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~---~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITF---EEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECH---HHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCc---HHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 35789999999999999999987654322 233333343322 3355555555432111110 1111
Q ss_pred ------HHHHHHHh---CCCcEEEEEeCCCC
Q 036788 118 ------IALSFRRL---SSRKFLIVLDDETC 139 (352)
Q Consensus 118 ------~~~l~~~l---~~k~~LlVlDdv~~ 139 (352)
.-.+.+++ .++.+|+++||+..
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 12234443 37899999999853
No 234
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.40 E-value=0.0094 Score=53.00 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=21.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.+|.|.|++|+||||+|+.+.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 235
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.38 E-value=0.016 Score=51.66 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=27.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
...++|+|+|-||+||||+|..++..+...-..++.+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 3568899999999999999999999765542233444
No 236
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.38 E-value=0.015 Score=47.95 Aligned_cols=25 Identities=24% Similarity=-0.021 Sum_probs=21.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++.|+|.+|+||||++..++++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999988887654
No 237
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.37 E-value=0.0075 Score=51.15 Aligned_cols=24 Identities=33% Similarity=0.703 Sum_probs=21.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+++|+|+.|+|||||++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998865
No 238
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.36 E-value=0.036 Score=46.72 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=24.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
..|+|.|+.|+||||+++.+.+.+...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 588999999999999999999987654
No 239
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.35 E-value=0.011 Score=48.21 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++++|.|..|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987653
No 240
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.31 E-value=0.0055 Score=54.51 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=20.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
...+|+|.|..|+||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999998654
No 241
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.30 E-value=0.022 Score=49.38 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..++.+.|.||+||||++..++....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 57889999999999999999998766
No 242
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.29 E-value=0.012 Score=47.12 Aligned_cols=25 Identities=32% Similarity=0.423 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
-.+++|.|..|+|||||++.++..+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3589999999999999999999876
No 243
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.28 E-value=0.015 Score=50.79 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=27.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
-.+++|+|+.|+|||||.+.+...+...+.+.+++
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~ 59 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT 59 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEE
Confidence 36899999999999999999988664433444444
No 244
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.27 E-value=0.014 Score=52.06 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
..+++.|.|+.|+||||||..+++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 45789999999999999999999874
No 245
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.26 E-value=0.01 Score=49.09 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
+++|+|..|+|||||++.++....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999998664
No 246
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.25 E-value=0.016 Score=53.46 Aligned_cols=27 Identities=26% Similarity=0.132 Sum_probs=23.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
....+++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345699999999999999999999764
No 247
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.25 E-value=0.011 Score=50.33 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
-.+++|.|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35899999999999999999998764
No 248
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.24 E-value=0.0089 Score=48.69 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=23.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
++++|+|..|+|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 58999999999999999999987654
No 249
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.23 E-value=0.022 Score=49.56 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=26.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
++|+|.|-||+||||+|..++..+...-..++.+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 5788899999999999999999876543334444
No 250
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.21 E-value=0.006 Score=55.18 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|.|.|+.|+||||||..+++++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3689999999999999999999865
No 251
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.16 E-value=0.006 Score=55.88 Aligned_cols=84 Identities=15% Similarity=0.096 Sum_probs=49.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceE-EEeeccccccCCCChHHHHHHHHHHHhcccc---cCCC-HHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSC-CHQNVREESRRPGGLGCLQQILLSKLLQEKN---AILD-IALSFRRL 125 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~-~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~---~~~~-~~~l~~~l 125 (352)
.+++|.|+.|+|||||.+.+...+.......+ .+.+..+ ...... ........ ...+ ...+.+.|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-----~~~~~~-----~~~v~q~~~~~~~~~~~~~La~aL 193 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-----FVHESK-----KCLVNQREVHRDTLGFSEALRSAL 193 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-----SCCCCS-----SSEEEEEEBTTTBSCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-----hhhhcc-----ccceeeeeeccccCCHHHHHHHHh
Confidence 49999999999999999999887654322322 2221110 000000 00000000 1111 56788888
Q ss_pred CCCcEEEEEeCCCChHHHH
Q 036788 126 SSRKFLIVLDDETCFKQIK 144 (352)
Q Consensus 126 ~~k~~LlVlDdv~~~~~~~ 144 (352)
...+=+|++|+..+.+.++
T Consensus 194 ~~~PdvillDEp~d~e~~~ 212 (356)
T 3jvv_A 194 REDPDIILVGEMRDLETIR 212 (356)
T ss_dssp TSCCSEEEESCCCSHHHHH
T ss_pred hhCcCEEecCCCCCHHHHH
Confidence 8899999999997655444
No 252
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.14 E-value=0.032 Score=53.37 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
..++|+|+|.+|+||||++..++..+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46799999999999999999999876543
No 253
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.10 E-value=0.024 Score=49.82 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.++.|+|.+|+|||||+..++..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 58999999999999999999986543
No 254
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.09 E-value=0.043 Score=45.98 Aligned_cols=30 Identities=20% Similarity=0.437 Sum_probs=25.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCc
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEG 80 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~ 80 (352)
+.|+|-|.-|+||||+++.+++.+...++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCE
Confidence 468899999999999999999988665543
No 255
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.09 E-value=0.014 Score=52.24 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
++|+|.|+.|+||||||..++++.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 588999999999999999999864
No 256
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=95.08 E-value=0.029 Score=52.83 Aligned_cols=86 Identities=16% Similarity=0.093 Sum_probs=49.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCC---CceEEEeeccccccCCCChHHHHHHHHHHHhcccc----cCCC------
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNF---EGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN----AILD------ 117 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f---~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~~~~------ 117 (352)
+.++|.|.+|+|||+|+..+++...... +..+.+..+++-. ....++.+.+...-..... ...+
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~---~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r 229 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITN---EEAQYFMSDFEKTGALERAVVFLNLADDPAVER 229 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECH---HHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCc---HHHHHHHHHHHhccCccceEEEEECCCCCHHHH
Confidence 4577889999999999999999765322 1233333343322 3355666666543111111 1111
Q ss_pred ------HHHHHHHh---CCCcEEEEEeCCCC
Q 036788 118 ------IALSFRRL---SSRKFLIVLDDETC 139 (352)
Q Consensus 118 ------~~~l~~~l---~~k~~LlVlDdv~~ 139 (352)
.-.+.+++ +++.+|+++||+..
T Consensus 230 ~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 230 IVTPRMALTAAEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 22233333 37999999999843
No 257
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.07 E-value=0.0078 Score=51.35 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=16.0
Q ss_pred EEEEEEcCCCchHHHHHHHHH-HHh
Q 036788 51 YALGIWGIGGIGKTTIARAIF-DKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~-~~~ 74 (352)
.+++|+|+.|+|||||++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998 654
No 258
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.04 E-value=0.016 Score=49.81 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
...|+|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998864
No 259
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.04 E-value=0.0099 Score=55.70 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
...+|.|+|++|+||||+|+.++++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999988754
No 260
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.02 E-value=0.015 Score=52.00 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=24.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
....+++|.|..|+|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999998765
No 261
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.01 E-value=0.024 Score=50.04 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=23.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.++|+|.|-||+||||+|..++..+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 3678889999999999999999876543
No 262
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.00 E-value=0.021 Score=54.68 Aligned_cols=48 Identities=6% Similarity=0.054 Sum_probs=34.1
Q ss_pred cccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 29 LVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 29 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
.+.|.+..+.+.+..........+|.+.|++|+||||+|+.+++++..
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 444555555566544211223468999999999999999999999864
No 263
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.99 E-value=0.038 Score=52.49 Aligned_cols=87 Identities=18% Similarity=0.086 Sum_probs=46.7
Q ss_pred EEEEEEcCCCchHHHHHH-HHHHHhhC------CCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc-----cCCC-
Q 036788 51 YALGIWGIGGIGKTTIAR-AIFDKISS------NFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN-----AILD- 117 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~-~~~~~~~~------~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~- 117 (352)
+.++|.|.+|+|||+||. .++++... +-+..+.+..+++-. ..+.++.+.+...=..... ...+
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~---~Ev~~~~~~~~~~g~m~~tvvV~atad~p 239 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKR---STVAQLVKRLTDADAMKYTIVVSATASDA 239 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCH---HHHHHHHHHHHHTTCGGGEEEEEECTTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCc---HHHHHHHHHHHhcCCcccceEEEECCCCC
Confidence 467899999999999954 66665541 234434333343322 2345555555432111110 1111
Q ss_pred ----------HHHHHHHh--CCCcEEEEEeCCCCh
Q 036788 118 ----------IALSFRRL--SSRKFLIVLDDETCF 140 (352)
Q Consensus 118 ----------~~~l~~~l--~~k~~LlVlDdv~~~ 140 (352)
.-.+.+++ .++.+|+++||+...
T Consensus 240 ~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 274 (510)
T 2ck3_A 240 APLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQ 274 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHH
Confidence 11222222 579999999998533
No 264
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.97 E-value=0.017 Score=49.39 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
...+|+|.|++|+||||+++.++..+.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999998753
No 265
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.96 E-value=0.037 Score=50.46 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=29.1
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhh--CCCCceEEEe
Q 036788 47 SKDVYALGIWGIGGIGKTTIARAIFDKIS--SNFEGSCCHQ 85 (352)
Q Consensus 47 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~--~~f~~~~~~~ 85 (352)
....+++.+.|-||+||||+|..++..+. ..-..++.++
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 34568999999999999999999998776 4433344443
No 266
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.92 E-value=0.026 Score=47.96 Aligned_cols=35 Identities=14% Similarity=-0.135 Sum_probs=27.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
-.++.++|.+|+||||++..++++...+-..++.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 46889999999999999999999876553333333
No 267
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.90 E-value=0.027 Score=50.10 Aligned_cols=29 Identities=28% Similarity=0.211 Sum_probs=24.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
...+++|+|.+|+||||++..++......
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35689999999999999999999876543
No 268
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.89 E-value=0.012 Score=59.97 Aligned_cols=51 Identities=25% Similarity=0.359 Sum_probs=39.2
Q ss_pred CcccchhhHHHHHHHhcCC-----------CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 28 QLVEVESRVEEIESLLGAG-----------SKDVYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
.++|.+...+.+.+.+... -.....+.++|++|+|||+||+.++......|
T Consensus 478 di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred ccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 6788888888888876521 11245688999999999999999999875443
No 269
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.87 E-value=0.014 Score=54.90 Aligned_cols=27 Identities=33% Similarity=0.350 Sum_probs=23.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
..+|+|+|.+|+||||++..++.....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999987643
No 270
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.86 E-value=0.04 Score=50.04 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=24.5
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 47 SKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 47 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.....+++|+|.+|+|||||+..++....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34567999999999999999999987653
No 271
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.83 E-value=0.1 Score=48.81 Aligned_cols=29 Identities=28% Similarity=0.211 Sum_probs=25.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
...+++++|.+|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999987655
No 272
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.83 E-value=0.028 Score=54.19 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
...+|.++|++|.||||+|+.+++.+.-.|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 356899999999999999999998765433
No 273
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=94.82 E-value=0.066 Score=49.22 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=28.0
Q ss_pred CCeEEEEEEc-CCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 48 KDVYALGIWG-IGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 48 ~~~~vv~I~G-~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+.++|+|+| -||+||||+|..++..+...-..++.++
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4578888885 8999999999999987654433344443
No 274
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.81 E-value=0.044 Score=51.95 Aligned_cols=85 Identities=18% Similarity=0.113 Sum_probs=45.8
Q ss_pred EEEEEEcCCCchHHHHHH-HHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc-----cCCC-------
Q 036788 51 YALGIWGIGGIGKTTIAR-AIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN-----AILD------- 117 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~-~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-----~~~~------- 117 (352)
+.++|.|.+|+|||+||. .++++.. -+..+.+..+++-. ..+.++.+.+...-..... ...+
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR~---~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQKG--QDVICIYVAIGQKQ---STVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGGS--CSEEEEEEEESCCH---HHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhhc--CCcEEEEEECCCcc---hHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 468899999999999965 5666542 34333333343322 2345555555432111110 1111
Q ss_pred ----HHHHHHHh--CCCcEEEEEeCCCCh
Q 036788 118 ----IALSFRRL--SSRKFLIVLDDETCF 140 (352)
Q Consensus 118 ----~~~l~~~l--~~k~~LlVlDdv~~~ 140 (352)
.-.+.+++ .++.+|+++||+...
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dsltr~ 266 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDLSKQ 266 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 11222322 579999999998543
No 275
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.80 E-value=0.02 Score=45.09 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
+-|+|.|.+|+|||||..++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998863
No 276
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.77 E-value=0.044 Score=49.65 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=28.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
...+++.+.|-||+||||+|..++..+...-..++.++
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34678889999999999999999988765533444443
No 277
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.77 E-value=0.06 Score=59.41 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=30.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
..+.+.|+|++|+|||+||.+++.....+-....|+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3568999999999999999999998766545566665
No 278
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.76 E-value=0.013 Score=48.79 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
+.|.|.|.+|+||||||.+++++.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 568899999999999999998763
No 279
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.74 E-value=0.018 Score=47.36 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
...++|.|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999999874
No 280
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.72 E-value=0.019 Score=47.99 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=23.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.+|+|.|+.|+||||+|+.+++++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999875
No 281
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.70 E-value=0.05 Score=49.36 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=27.4
Q ss_pred HHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 39 IESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 39 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
+.+-+...-....+++|.|.+|+|||||...+.....
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3333332234557999999999999999999987654
No 282
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.69 E-value=0.062 Score=48.26 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 37 EEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 37 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
..|-..|..+=..-.++.|+|.+|+|||+||.+++...
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444443222334699999999999999999999764
No 283
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.65 E-value=0.051 Score=45.80 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
..|++.|+.|+||||+++.+++.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999987543
No 284
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.64 E-value=0.019 Score=49.49 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=25.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++|.|+.|+|||||.+.++.-+.. ..+.+++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~ 58 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKP-DRGEVRLN 58 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEET
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEEC
Confidence 68999999999999999998865432 23445553
No 285
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.64 E-value=0.022 Score=52.75 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
++|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5889999999999999999998753
No 286
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.63 E-value=0.05 Score=46.63 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=27.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEE
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSN-FEGSCCH 84 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~ 84 (352)
...|+|.|+.|+||||+++.+++.+... ++.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 3589999999999999999999987543 4434333
No 287
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.61 E-value=0.064 Score=44.57 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=26.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
.|+|-|.-|+||||.++.+++.+......+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 478899999999999999999887654444433
No 288
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.61 E-value=0.016 Score=49.71 Aligned_cols=34 Identities=26% Similarity=0.204 Sum_probs=25.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++|.|+.|+|||||.+.++.-+.. ..+.+++.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p-~~G~I~~~ 65 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKP-TEGEVYID 65 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC-CceEEEEC
Confidence 48999999999999999988754332 23455554
No 289
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.61 E-value=0.025 Score=45.15 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
..|+|.|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999875
No 290
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.60 E-value=0.047 Score=46.65 Aligned_cols=33 Identities=30% Similarity=0.596 Sum_probs=25.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 53 LGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 53 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
|+|.|-||+||||+|..++..+...-..++.++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 566999999999999999998765533344443
No 291
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.59 E-value=0.06 Score=50.99 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=23.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
.+.|.|.+|+|||+++..+...+....
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 889999999999999999998765443
No 292
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.59 E-value=0.02 Score=47.36 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
...++|.|.+|+|||||...+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999874
No 293
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.57 E-value=0.023 Score=47.25 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=20.7
Q ss_pred ccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 30 VEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 30 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
-++++..+.+.+... ....--|+|+|.+|+|||||...+...
T Consensus 12 ~~~~~~~~~m~~~~~--~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 12 SGLVPRGSHMENLYF--QGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --------------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcccchhHHHhHhh--cCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 344444444544333 233456789999999999999998863
No 294
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.56 E-value=0.048 Score=51.82 Aligned_cols=85 Identities=22% Similarity=0.126 Sum_probs=46.1
Q ss_pred EEEEEEcCCCchHHHHHH-HHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc----c-CCC-------
Q 036788 51 YALGIWGIGGIGKTTIAR-AIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN----A-ILD------- 117 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~-~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~-~~~------- 117 (352)
+.++|.|.+|+|||+||. .++++.. -+..+.+..+++-. ..+.++.+.+...=..... . ..+
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~~--~dv~~V~~~IGeR~---~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQKG--QGVYCIYVAIGQKK---SAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTTT--TTEEEEEEEESCCH---HHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCCCc---HHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 468899999999999965 5666542 34333333343322 2345555555432111111 1 111
Q ss_pred ----HHHHHHHh--CCCcEEEEEeCCCCh
Q 036788 118 ----IALSFRRL--SSRKFLIVLDDETCF 140 (352)
Q Consensus 118 ----~~~l~~~l--~~k~~LlVlDdv~~~ 140 (352)
.-.+.+++ .++.+|+++||+...
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~DslTr~ 279 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDLSKH 279 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccHHHH
Confidence 11222222 579999999998543
No 295
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.56 E-value=0.045 Score=46.48 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=24.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
....|.|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3568999999999999999999998754
No 296
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.56 E-value=0.016 Score=49.31 Aligned_cols=34 Identities=24% Similarity=0.193 Sum_probs=25.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++|.|+.|+|||||.+.++.-... ..+.+++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~ 64 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDAP-TEGKVFLE 64 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEEC
Confidence 48999999999999999988754322 23445553
No 297
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.56 E-value=0.026 Score=51.52 Aligned_cols=37 Identities=27% Similarity=0.438 Sum_probs=27.4
Q ss_pred HHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 39 IESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 39 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
|-..|..+=..-.++.|+|.+|+|||||+..++..+.
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~ 156 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 156 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3344432223347999999999999999999998763
No 298
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.037 Score=45.24 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3558899999999999999998864
No 299
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.55 E-value=0.028 Score=44.51 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.--|+|.|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999999874
No 300
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.53 E-value=0.032 Score=54.08 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=24.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
-.+++|.|+.|+|||||++.++..+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 368999999999999999999998764
No 301
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.52 E-value=0.026 Score=48.19 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
...++|.|++|+||||+|+.+++..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999876
No 302
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.51 E-value=0.053 Score=51.39 Aligned_cols=82 Identities=18% Similarity=0.121 Sum_probs=44.8
Q ss_pred EEEEEEcCCCchHHHHHH-HHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc----c-CCC-------
Q 036788 51 YALGIWGIGGIGKTTIAR-AIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN----A-ILD------- 117 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~-~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~----~-~~~------- 117 (352)
+.++|.|.+|+|||+||. .++++ ..-+..|.+..+++-. ..+.++.+.+...=..... . ..+
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~--~~~dv~~V~~~IGeR~---~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ--RDSGIKCIYVAIGQKA---STISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT--SSSSCEEEEEEESCCH---HHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh--ccCCceEEEEEecCCh---HHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 467899999999999974 55554 2234333333343322 2345555554332111110 1 111
Q ss_pred --------HHHHHHHhCCCcEEEEEeCCCC
Q 036788 118 --------IALSFRRLSSRKFLIVLDDETC 139 (352)
Q Consensus 118 --------~~~l~~~l~~k~~LlVlDdv~~ 139 (352)
++.++. +++.+||++||+..
T Consensus 238 a~~~a~tiAEyfrd--~G~dVLli~Dsltr 265 (513)
T 3oaa_A 238 APYAGCAMGEYFRD--RGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEecChHH
Confidence 233333 58999999999853
No 303
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.50 E-value=0.045 Score=49.30 Aligned_cols=35 Identities=29% Similarity=0.207 Sum_probs=26.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
..++...|-||+||||+|..++..+...-..++.+
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlv 48 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVI 48 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEE
Confidence 46777789999999999999998765543333444
No 304
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.48 E-value=0.039 Score=47.06 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
-..|+|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 3588999999999999999999987653
No 305
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.48 E-value=0.017 Score=47.13 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036788 52 ALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~ 72 (352)
-|+|+|.+|+|||||...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999876
No 306
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.45 E-value=0.015 Score=48.86 Aligned_cols=23 Identities=30% Similarity=0.125 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.+++|.|..|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999998865
No 307
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.44 E-value=0.051 Score=50.96 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
+.++|.|.+|+|||+|+..++++..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred CEEEEecCCCCCchHHHHHHHHHHH
Confidence 3578999999999999999998754
No 308
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.44 E-value=0.019 Score=49.39 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.+++|+|..|+|||||.+.++.-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998864
No 309
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.43 E-value=0.061 Score=49.00 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=24.7
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 47 SKDVYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 47 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
.....++.+.|-||+||||+|..++..+...
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~ 53 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEK 53 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHC
Confidence 3445677778999999999999999876544
No 310
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.41 E-value=0.023 Score=44.77 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036788 52 ALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
-|++.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 311
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.36 E-value=0.038 Score=44.90 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=21.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.....|+|+|.+|+|||||..++...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999988753
No 312
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.35 E-value=0.024 Score=49.12 Aligned_cols=23 Identities=22% Similarity=0.409 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.+++|.|..|+|||||.+.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998864
No 313
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.34 E-value=0.037 Score=52.51 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=19.3
Q ss_pred EEEEEEcCCCchHHHHHH-HHHHHh
Q 036788 51 YALGIWGIGGIGKTTIAR-AIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~-~~~~~~ 74 (352)
+.++|.|.+|+|||+||. .++++.
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~ 188 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ 188 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh
Confidence 467899999999999965 566554
No 314
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.32 E-value=0.02 Score=50.00 Aligned_cols=34 Identities=29% Similarity=0.282 Sum_probs=25.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++|.|+.|+|||||.+.++.-+.. ..+.+++.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p-~~G~i~~~ 66 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKP-SEGAIIVN 66 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEEC
Confidence 48999999999999999988764332 23455553
No 315
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.29 E-value=0.019 Score=48.27 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+|+|.|++|+||||+++.+.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 378999999999999999998875
No 316
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.28 E-value=0.08 Score=50.78 Aligned_cols=48 Identities=17% Similarity=0.055 Sum_probs=31.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQIL 104 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~l 104 (352)
+.++|.|.+|+|||+|+..+++... -+..+++. +++ .+....++.+.+
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~~~--~~~~V~~~-iGE---R~~Ev~e~~~~~ 275 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKWSD--AQVVIYIG-CGE---RGNEMTDVLEEF 275 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHHSS--CSEEEEEE-CCS---SSSHHHHHHHHT
T ss_pred CeEEeecCCCCCHHHHHHHHHhccC--CCEEEEEE-ecc---cHHHHHHHHHHH
Confidence 4789999999999999999887532 23444443 333 213355555543
No 317
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.28 E-value=0.021 Score=50.30 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=25.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++|.|+.|+|||||++.++.-+.. ..+.+++.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~p-~~G~I~~~ 68 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILKP-SSGRILFD 68 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-CCeEEEEC
Confidence 48999999999999999988764332 23455553
No 318
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.28 E-value=0.026 Score=50.35 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
-.+++|+|+.|+|||||++.+..-+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3589999999999999999999876
No 319
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.24 E-value=0.026 Score=49.48 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.+++|.|..|+|||||.+.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998864
No 320
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.24 E-value=0.085 Score=50.56 Aligned_cols=52 Identities=8% Similarity=-0.123 Sum_probs=36.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEEeeccccccCCCChHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSN-FEGSCCHQNVREESRRPGGLGCLQQILLSKL 108 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l 108 (352)
-.++.|.|.+|+||||||.+++...... -..++|+. .. .+..++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s------~E-~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM------LE-ESVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE------SS-SCHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe------cc-CCHHHHHHHHHHHH
Confidence 3588999999999999999999987654 23556664 22 44566666665443
No 321
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.24 E-value=0.022 Score=49.05 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=25.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++|.|..|+|||||.+.++.-... ..+.+++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~ 66 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVRA-QKGKIIFN 66 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEEC
Confidence 48999999999999999998764332 23455553
No 322
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.23 E-value=0.045 Score=52.05 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=24.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNF 78 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 78 (352)
..+|.++|++|+||||+++.+++.....|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 45889999999999999999998765444
No 323
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.22 E-value=0.024 Score=48.92 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=25.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++|.|..|+|||||.+.++.-... ..+.+++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~ 62 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQP-TAGEITID 62 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCC-SBSCEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEEC
Confidence 58999999999999999998864432 23455553
No 324
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.20 E-value=0.034 Score=45.16 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
...|+|.|.+|+|||||...+..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999999986
No 325
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.20 E-value=0.037 Score=44.24 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
.--|+|.|.+|+|||||..++..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 45688999999999999998875
No 326
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.20 E-value=0.022 Score=49.54 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=25.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++|.|+.|+|||||.+.++.-+.. ..+.+++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~p-~~G~i~~~ 67 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLKA-DEGRVYFE 67 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEEC
Confidence 48999999999999999998764432 23455553
No 327
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.20 E-value=0.022 Score=49.87 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=25.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++|.|..|+|||||++.++.-+.. ..+.+++.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~I~~~ 71 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLSP-SHGECHLL 71 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSCC-SSCEEEET
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEEC
Confidence 48999999999999999998864432 24556554
No 328
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.17 E-value=0.028 Score=45.84 Aligned_cols=23 Identities=30% Similarity=0.709 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
-.|+++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999874
No 329
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.15 E-value=0.047 Score=45.21 Aligned_cols=35 Identities=23% Similarity=0.171 Sum_probs=25.9
Q ss_pred EEEEEE-cCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIW-GIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~-G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
++|+|+ +-||+||||+|..++..+...-..++.++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 577787 67899999999999997665433444443
No 330
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.15 E-value=0.023 Score=48.50 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=21.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+++|.|..|+|||||.+.++.-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999988644
No 331
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.15 E-value=0.023 Score=49.11 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=25.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++|.|..|+|||||.+.++.-... ..+.+++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~I~i~ 69 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLID 69 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEEC
Confidence 48999999999999999998764332 23455554
No 332
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.13 E-value=0.023 Score=49.61 Aligned_cols=34 Identities=24% Similarity=0.161 Sum_probs=25.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++|.|+.|+|||||.+.++.-+.. ..+.+++.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~p-~~G~I~~~ 84 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLEDF-DEGEIIID 84 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCCC-CCcEEEEC
Confidence 58999999999999999998764432 23455553
No 333
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.08 E-value=0.02 Score=48.37 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=24.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
.+++|.|..|+|||||.+.++.-... ..+.+++
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p-~~G~I~~ 68 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKP-LKGEIIY 68 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEE
Confidence 47999999999999999998764322 2344554
No 334
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.07 E-value=0.031 Score=44.12 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=20.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
--|+|.|.+|+|||||..++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998863
No 335
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.06 E-value=0.035 Score=46.48 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.....|.|+|.+|+|||||..++...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999874
No 336
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.06 E-value=0.031 Score=44.20 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036788 52 ALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
-|+|.|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999873
No 337
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.03 E-value=0.025 Score=49.31 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=26.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++|+|..|+|||||.+.++.-+.. .+.+++.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~~--~G~I~i~ 79 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYDA--EGDIKIG 79 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC--EEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC--CeEEEEC
Confidence 48999999999999999998875532 4556654
No 338
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.01 E-value=0.032 Score=44.37 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.--|+|.|.+|+|||||..++...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998864
No 339
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.01 E-value=0.015 Score=57.05 Aligned_cols=47 Identities=17% Similarity=0.046 Sum_probs=33.9
Q ss_pred CcccchhhHHHHHHHhcCCCC---------CeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 28 QLVEVESRVEEIESLLGAGSK---------DVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~---------~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|.+...+.+.-.|..+.. +..-+.++|.+|+|||+||+.+++..
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 799999877666555543310 01147899999999999999988754
No 340
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.00 E-value=0.024 Score=52.87 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
...+++|.|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999987
No 341
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.00 E-value=0.026 Score=49.14 Aligned_cols=34 Identities=32% Similarity=0.334 Sum_probs=25.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++|.|..|+|||||.+.++.-... ..+.+++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~p-~~G~I~~~ 75 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIKP-SSGIVTVF 75 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEEC
Confidence 48999999999999999998764321 23455553
No 342
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.99 E-value=0.059 Score=49.12 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
+..+|+|+|.+|+|||||...+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 367999999999999999999987543
No 343
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.98 E-value=0.035 Score=43.84 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036788 53 LGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 53 v~I~G~gGiGKTtLa~~~~~~ 73 (352)
|+|.|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999874
No 344
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.97 E-value=0.026 Score=49.53 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=25.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++|.|..|+|||||.+.++.-+.. ..+.+++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~p-~~G~I~~~ 79 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQP-TGGKVLLD 79 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCEEEEC
Confidence 48999999999999999998865432 23555553
No 345
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.95 E-value=0.051 Score=42.88 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
..-|+|.|.+|+|||||...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999998874
No 346
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.95 E-value=0.034 Score=44.10 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036788 52 ALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
-|+|.|.+|+|||||..++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
No 347
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.93 E-value=0.034 Score=44.15 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
--|+|.|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999874
No 348
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.93 E-value=0.051 Score=43.56 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
....-|+|.|.+|+|||||..++...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999998874
No 349
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.92 E-value=0.055 Score=52.75 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..+|.|.|++|+||||+|+.+.+.+.
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999999865
No 350
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.92 E-value=0.027 Score=48.75 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=26.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++|.|..|+|||||.+.++.-+... +.+++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~~ 59 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK--GSIQFA 59 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEET
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEEC
Confidence 489999999999999999988765543 555553
No 351
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.92 E-value=0.03 Score=50.31 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
..++++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999998753
No 352
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.88 E-value=0.028 Score=49.19 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=25.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++|.|..|+|||||.+.++.-.. ...+.+++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~-p~~G~I~~~ 67 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIE-PTSGDVLYD 67 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC-CCCcEEEEC
Confidence 4899999999999999999875432 123455553
No 353
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.87 E-value=0.034 Score=44.60 Aligned_cols=24 Identities=33% Similarity=0.242 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
....|+|.|.+|+|||||...+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999999876
No 354
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.87 E-value=0.08 Score=51.30 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=29.8
Q ss_pred chhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 32 VESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 32 R~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
|.+..+.+.+..........+|.+.|++|+||||+|+.+.+.+.
T Consensus 354 r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 354 RPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred chhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 33334444444321122346899999999999999999998764
No 355
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.87 E-value=0.034 Score=45.35 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.--|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999988763
No 356
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.85 E-value=0.045 Score=43.45 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
--|+|.|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999863
No 357
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.84 E-value=0.031 Score=44.30 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.5
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036788 52 ALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~ 72 (352)
-|+|.|.+|+|||||...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998764
No 358
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.83 E-value=0.029 Score=48.73 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+++|.|..|+|||||.+.++.-+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999887643
No 359
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.83 E-value=0.018 Score=50.17 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
....|+|.|..|+||||+|+.+++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999998887653
No 360
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.83 E-value=0.028 Score=49.52 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=25.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++|.|..|+|||||.+.++.-+.. ..+.+++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~p-~~G~I~~~ 81 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEPA-TSGTVNLF 81 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC-CCeEEEEC
Confidence 48999999999999999988764432 23445553
No 361
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.82 E-value=0.033 Score=44.90 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999999863
No 362
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.81 E-value=0.036 Score=44.41 Aligned_cols=24 Identities=21% Similarity=0.553 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
..-|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998863
No 363
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.81 E-value=0.047 Score=44.35 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999874
No 364
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.80 E-value=0.037 Score=43.84 Aligned_cols=23 Identities=17% Similarity=0.419 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
--|+|.|.+|+|||||..++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999998873
No 365
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.80 E-value=0.041 Score=45.00 Aligned_cols=25 Identities=12% Similarity=0.384 Sum_probs=21.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHH
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
.+...|+|+|.+|+|||||...+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456889999999999999999875
No 366
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.79 E-value=0.093 Score=44.30 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=23.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISS 76 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 76 (352)
..|.+.|+.|+||||++..+++.+..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 58899999999999999999998875
No 367
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.78 E-value=0.096 Score=43.80 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=24.7
Q ss_pred EEEEE-cCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 52 ALGIW-GIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 52 vv~I~-G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
+|+|+ +-||+||||+|..++..+...- .++.++
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD 35 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLID 35 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence 45664 7899999999999999876654 444443
No 368
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.78 E-value=0.039 Score=46.92 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=23.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
..+|+|.|+.|+||||+|+.+++++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999874
No 369
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.76 E-value=0.036 Score=44.06 Aligned_cols=22 Identities=27% Similarity=0.800 Sum_probs=19.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
--|+|+|.+|+|||||...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3578999999999999999886
No 370
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.76 E-value=0.05 Score=43.68 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=21.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
....-|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999998873
No 371
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.75 E-value=0.037 Score=45.20 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.--|+|+|.+|+|||||...+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 456889999999999999998874
No 372
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.74 E-value=0.13 Score=43.24 Aligned_cols=35 Identities=11% Similarity=-0.102 Sum_probs=26.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
-.+..++|..|.||||.+...+++...+-..++.+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~ 62 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVF 62 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 46889999999999999999998865543333333
No 373
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.73 E-value=0.037 Score=51.44 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 37 EEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 37 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
..|-..|..+-..-.++.|+|.+|+|||||+..++-.
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3444444322223459999999999999999987754
No 374
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.71 E-value=0.031 Score=44.98 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.--|+|.|.+|+|||||..++...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999998874
No 375
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.70 E-value=0.049 Score=50.10 Aligned_cols=84 Identities=11% Similarity=0.021 Sum_probs=46.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc---cCCC-HHHHHHHh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN---AILD-IALSFRRL 125 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~---~~~~-~~~l~~~l 125 (352)
-.+++|+|+.|+|||||++.+...+.....+.+.+..- .. . ..... .+ .+..+.. +... ...+...+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~-~~--e-~~~~~---~~--~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PI--E-YVFKH---KK--SIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES-SC--C-SCCCC---SS--SEEEEEEBTTTBSCSHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc-cH--h-hhhcc---Cc--eEEEeeecCCCHHHHHHHHHHHh
Confidence 46899999999999999999998665432333432210 00 0 00000 00 0000000 0111 55677777
Q ss_pred CCCcEEEEEeCCCChHH
Q 036788 126 SSRKFLIVLDDETCFKQ 142 (352)
Q Consensus 126 ~~k~~LlVlDdv~~~~~ 142 (352)
...+=+|++|++.+.+.
T Consensus 207 ~~~pd~illdE~~d~e~ 223 (372)
T 2ewv_A 207 REDPDVIFVGEMRDLET 223 (372)
T ss_dssp TSCCSEEEESCCCSHHH
T ss_pred hhCcCEEEECCCCCHHH
Confidence 77777899999875443
No 376
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.68 E-value=0.051 Score=53.32 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
...+|.|.|++|+||||+|+.+.+.+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999863
No 377
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.67 E-value=0.031 Score=47.64 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.-.+|+|.|..|+||||+++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3469999999999999999988765
No 378
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.66 E-value=0.039 Score=45.27 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
..|+|.|.+|+|||||..++...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999998863
No 379
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.65 E-value=0.097 Score=44.59 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=26.6
Q ss_pred CeEEEEEEc-CCCchHHHHHHHHHHHhhCC-CCceEEE
Q 036788 49 DVYALGIWG-IGGIGKTTIARAIFDKISSN-FEGSCCH 84 (352)
Q Consensus 49 ~~~vv~I~G-~gGiGKTtLa~~~~~~~~~~-f~~~~~~ 84 (352)
..++|+|++ -||+||||+|..++..+... -..++.+
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 40 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAV 40 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence 346787774 68999999999999987765 2333444
No 380
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.63 E-value=0.041 Score=48.26 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 036788 52 ALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 381
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.61 E-value=0.042 Score=43.69 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999998763
No 382
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.60 E-value=0.041 Score=44.73 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+.+|+|..|+|||||+.+++--+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 388999999999999999988754
No 383
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.60 E-value=0.041 Score=45.24 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
.--|+|+|.+|+|||||..++..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35688999999999999999875
No 384
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.60 E-value=0.13 Score=56.00 Aligned_cols=91 Identities=15% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc--
Q 036788 37 EEIESLLG-AGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN-- 113 (352)
Q Consensus 37 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~-- 113 (352)
.+|-..|. .+=..-.++.|.|.+|+||||||.+++......-..++|+. .... ..... ...++....
T Consensus 718 ~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS----~Ees-~~ql~-----A~~lGvd~~~L 787 (1706)
T 3cmw_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHA-LDPIY-----ARKLGVDIDNL 787 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC----TTSC-CCHHH-----HHHTTCCGGGC
T ss_pred HHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe----ccch-HHHHH-----HHHcCCChhhe
Q ss_pred cCCC---HHHHHHHhC-----CCcEEEEEeCC
Q 036788 114 AILD---IALSFRRLS-----SRKFLIVLDDE 137 (352)
Q Consensus 114 ~~~~---~~~l~~~l~-----~k~~LlVlDdv 137 (352)
-+.+ .+.+...++ .+.-+||+|.+
T Consensus 788 ~i~~~~~leei~~~l~~lv~~~~~~lVVIDsL 819 (1706)
T 3cmw_A 788 LCSQPDTGEQALEICDALARSGAVDVIVVDSV 819 (1706)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCS
T ss_pred EEecCCcHHHHHHHHHHHHHccCCCEEEEech
No 385
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.57 E-value=0.056 Score=42.84 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
--|+|+|.+|+|||||...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4688999999999999999886
No 386
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.55 E-value=0.043 Score=44.46 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
--|+|.|.+|+|||||...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999874
No 387
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.53 E-value=0.041 Score=44.85 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
....|+|.|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999998874
No 388
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.53 E-value=0.077 Score=46.09 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=26.0
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 38 EIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 38 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
++.+.+.........|+|+|.+|+|||||...+...
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 333334333334567899999999999999998863
No 389
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.52 E-value=0.046 Score=50.07 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
...++|+|..|+|||||++.++....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988653
No 390
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.52 E-value=0.056 Score=43.22 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
...-|+|+|.+|+|||||..++...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3567889999999999999999874
No 391
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.52 E-value=0.044 Score=44.25 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
--|+|.|.+|+|||||..++.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999998863
No 392
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.51 E-value=0.52 Score=40.12 Aligned_cols=40 Identities=23% Similarity=0.151 Sum_probs=29.0
Q ss_pred ccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 036788 30 VEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 30 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
-=|+.+.+.+..++.. + -+.|+|..|.|||.+|..++...
T Consensus 93 ~l~~~Q~~ai~~~~~~---~--~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 93 SLRDYQEKALERWLVD---K--RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCHHHHHHHHHHTTT---S--EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHhC---C--CEEEEeCCCCCHHHHHHHHHHHc
Confidence 3456666666666542 1 27789999999999999888765
No 393
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=93.51 E-value=0.14 Score=46.72 Aligned_cols=37 Identities=22% Similarity=0.132 Sum_probs=27.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh--CCCCceEEEe
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKIS--SNFEGSCCHQ 85 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~--~~f~~~~~~~ 85 (352)
...++...|-||+||||+|..++..+. ..-..++.++
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 345777789999999999999999877 5433444443
No 394
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.50 E-value=0.044 Score=44.80 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998873
No 395
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.49 E-value=0.048 Score=44.23 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
+-+.|.|.+|+||||||.++.++
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46789999999999999999884
No 396
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.48 E-value=0.031 Score=49.91 Aligned_cols=34 Identities=29% Similarity=0.370 Sum_probs=24.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++|+|..|+|||||++.+..-+.. ..+.+++.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~~p-~~G~I~i~ 114 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFYDI-SSGCIRID 114 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCC-CCcEEEEC
Confidence 58999999999999999988753321 23445553
No 397
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.47 E-value=0.18 Score=41.68 Aligned_cols=35 Identities=17% Similarity=0.021 Sum_probs=24.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
...|.|++-.|.||||.|...+-+...+--.+.++
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 34677777777999999999998855543334444
No 398
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.47 E-value=0.048 Score=43.72 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHH
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
+...-|+|.|.+|+|||||...+..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 3456789999999999999998875
No 399
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.45 E-value=0.046 Score=44.01 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=19.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
--|+|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999988763
No 400
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.45 E-value=0.15 Score=44.60 Aligned_cols=51 Identities=20% Similarity=0.094 Sum_probs=33.7
Q ss_pred hHHHHHHHhc--CCCCCeEEEEEEcC-CCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 35 RVEEIESLLG--AGSKDVYALGIWGI-GGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 35 ~~~~l~~~L~--~~~~~~~vv~I~G~-gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
..+.|...|. ......++|+|+|. ||+||||+|..++..+...-..++.++
T Consensus 65 a~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 65 KFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp HHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 3444544443 22345689999875 899999999999987665433445554
No 401
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.44 E-value=0.046 Score=44.61 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=19.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.--|+|+|.+|+|||||.+.+...
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 456889999999999999766553
No 402
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.44 E-value=0.081 Score=46.14 Aligned_cols=26 Identities=23% Similarity=0.532 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.....|+++|.+|+|||||...+...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34568889999999999999998863
No 403
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.43 E-value=0.045 Score=43.82 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
--|+|+|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999998863
No 404
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.43 E-value=0.045 Score=44.31 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
...-|+|.|.+|+|||||...+...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999999874
No 405
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.43 E-value=0.037 Score=48.31 Aligned_cols=33 Identities=33% Similarity=0.412 Sum_probs=25.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++|.|..|+|||||.+.++.-. ...+.+++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~--p~~G~I~~~ 63 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL--PYSGNIFIN 63 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS--CCEEEEEET
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC--CCCcEEEEC
Confidence 489999999999999999988654 234555553
No 406
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.40 E-value=0.046 Score=44.08 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
...|+|.|.+|+|||||...+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45788999999999999999986
No 407
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.39 E-value=0.067 Score=42.84 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
.--|+|.|.+|+|||||..++..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHG
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 45688999999999999999875
No 408
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.38 E-value=0.041 Score=44.64 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036788 52 ALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
-|+|.|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998863
No 409
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.37 E-value=0.047 Score=44.84 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.--|+|.|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998874
No 410
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.37 E-value=0.048 Score=44.01 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
..-|+|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 457889999999999999998873
No 411
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.36 E-value=0.048 Score=43.86 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
..-|+|+|.+|+|||||..++...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356889999999999999998874
No 412
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.35 E-value=0.076 Score=42.80 Aligned_cols=25 Identities=36% Similarity=0.691 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
..--|+|+|.+|+|||||...+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457889999999999999999874
No 413
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.35 E-value=0.064 Score=43.51 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
..--|+|+|.+|+|||||...+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999998873
No 414
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.34 E-value=0.044 Score=50.04 Aligned_cols=24 Identities=38% Similarity=0.354 Sum_probs=21.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+++|.|+.|+|||||.+.++--.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 489999999999999999988743
No 415
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.32 E-value=0.051 Score=44.43 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.--|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 346889999999999999998875
No 416
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.30 E-value=0.05 Score=43.69 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.--|+|.|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999998864
No 417
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.28 E-value=0.063 Score=47.49 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=30.0
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEc---CCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 35 RVEEIESLLGAGSKDVYALGIWG---IGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 35 ~~~~l~~~L~~~~~~~~vv~I~G---~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
.+.++.+.+.. ..++++|++ -||+||||+|..++..+...-..++.+
T Consensus 22 ~~~~~~r~~~~---~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 22 ILEELRRILSN---KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp HHHHHHHHHHH---HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHhcC---CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 34555555542 234666665 899999999999998765432233433
No 418
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.26 E-value=0.048 Score=45.40 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
..--|+|+|.+|+|||||...+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999999874
No 419
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.26 E-value=0.05 Score=44.53 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.--|+|+|.+|+|||||..++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999874
No 420
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.25 E-value=0.066 Score=44.16 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
...-|+|.|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567899999999999999998874
No 421
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.24 E-value=0.049 Score=44.90 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIF 71 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~ 71 (352)
...-|+|+|.+|+|||||..++.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999875
No 422
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.23 E-value=0.049 Score=44.94 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
...-|+|+|.+|+|||||...+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3567899999999999999999874
No 423
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.21 E-value=0.05 Score=45.19 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
...-|+|+|.+|+|||||..++...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3567889999999999999998864
No 424
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.20 E-value=0.052 Score=44.42 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998874
No 425
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.18 E-value=0.18 Score=47.03 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=24.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 77 (352)
-.+++|+|+.|+|||||.+.+...+...
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 4689999999999999999999877543
No 426
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.17 E-value=0.053 Score=44.20 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.--|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999999863
No 427
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.17 E-value=0.052 Score=45.20 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
...|+|.|.+|+|||||..++...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999874
No 428
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.16 E-value=0.078 Score=43.62 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
...-|+|.|.+|+|||||...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457889999999999999998863
No 429
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.16 E-value=0.073 Score=44.32 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
...+|+|+|++|+||+|.|..+.+...
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g 36 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLG 36 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcC
Confidence 457999999999999999998877553
No 430
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=93.15 E-value=0.16 Score=45.15 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=28.3
Q ss_pred CCeEEEEEEcC-CCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 48 KDVYALGIWGI-GGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 48 ~~~~vv~I~G~-gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
...++|+|+|. ||+||||+|..++..+...-..++.++
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 45678999985 899999999999997655433444444
No 431
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.12 E-value=0.052 Score=44.42 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.--|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999999874
No 432
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=93.10 E-value=0.14 Score=46.06 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=27.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
...++.+.|-||+||||+|..++..+...-..+..+
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllv 53 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLI 53 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEE
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 346777889999999999999999876553333444
No 433
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.10 E-value=0.052 Score=49.51 Aligned_cols=23 Identities=43% Similarity=0.539 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.+++|.|+.|+|||||.+.++--
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999998864
No 434
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.10 E-value=0.052 Score=49.66 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=24.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
.+++|.|+.|+|||||.+.+..-.+. ..+.+++
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~p-~~G~I~i 87 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLV 87 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEE
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCCC-CceEEEE
Confidence 58999999999999999988764322 2344544
No 435
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.09 E-value=0.056 Score=44.03 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
..-|+|+|.+|+|||||..++...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999998874
No 436
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.08 E-value=0.056 Score=44.14 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
...-|+|+|.+|+|||||..++...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3557899999999999999999874
No 437
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.08 E-value=0.064 Score=43.89 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHH
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
.....|+|+|.+|+|||||..++..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4467899999999999999999876
No 438
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=93.05 E-value=0.16 Score=46.53 Aligned_cols=48 Identities=27% Similarity=0.312 Sum_probs=34.6
Q ss_pred CcccchhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 036788 28 QLVEVESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 28 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 75 (352)
.++|....+.++...+..-......+.|+|.+|+||+++|+.+++.-.
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~ 177 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSG 177 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcc
Confidence 689988888777666542112223466999999999999998887543
No 439
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.05 E-value=0.057 Score=44.11 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.--|+|+|.+|+|||||...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998863
No 440
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.05 E-value=0.042 Score=45.43 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
.-|+|+|.+|+|||||..++..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999998864
No 441
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.04 E-value=0.045 Score=48.54 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.+++|.|..|+|||||.+.++.-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999998764
No 442
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.04 E-value=0.14 Score=50.78 Aligned_cols=47 Identities=23% Similarity=0.116 Sum_probs=29.7
Q ss_pred hhhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH-hhCCCCceEEEe
Q 036788 33 ESRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDK-ISSNFEGSCCHQ 85 (352)
Q Consensus 33 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~-~~~~f~~~~~~~ 85 (352)
+.+.+.+...|... .+..|+|+||+|||+.+.++... +... ..+.++
T Consensus 192 ~~Q~~AV~~al~~~----~~~lI~GPPGTGKT~ti~~~I~~l~~~~--~~ILv~ 239 (646)
T 4b3f_X 192 TSQKEAVLFALSQK----ELAIIHGPPGTGKTTTVVEIILQAVKQG--LKVLCC 239 (646)
T ss_dssp HHHHHHHHHHHHCS----SEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHHHhcCC----CceEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEE
Confidence 34455566666521 36789999999999877666554 4432 345554
No 443
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.00 E-value=0.058 Score=45.55 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036788 52 ALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~ 72 (352)
-|.|+|.+|+|||+|..++.+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 477999999999999999876
No 444
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.99 E-value=0.058 Score=43.91 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
..-|+|+|.+|+|||||..++...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999998863
No 445
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.97 E-value=0.059 Score=43.88 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.--|+|+|.+|+|||||..++...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357889999999999999999874
No 446
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.97 E-value=0.055 Score=49.79 Aligned_cols=24 Identities=29% Similarity=0.255 Sum_probs=21.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKI 74 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~ 74 (352)
.+++|.|+.|+|||||.+.++--.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 489999999999999999998643
No 447
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.96 E-value=0.055 Score=45.48 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
..-|+|+|.+|+|||||..++..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45689999999999999998863
No 448
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.95 E-value=0.06 Score=44.35 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
...-|+|.|.+|+|||||...+..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 346788999999999999999876
No 449
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.94 E-value=0.057 Score=49.37 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.+++|.|+.|+|||||.+.++--
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHCC
Confidence 48999999999999999998864
No 450
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=92.93 E-value=0.12 Score=50.66 Aligned_cols=36 Identities=25% Similarity=0.142 Sum_probs=26.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
..+++.+.|.||+||||+|..++......-..++.+
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlv 42 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLV 42 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEE
Confidence 456888999999999999999998765442333443
No 451
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.90 E-value=0.052 Score=49.42 Aligned_cols=23 Identities=30% Similarity=0.209 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.+++|.|+.|+|||||.+.++--
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 48999999999999999998864
No 452
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.90 E-value=0.032 Score=46.38 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
...++|+|.+|+|||||...+..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999988764
No 453
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.89 E-value=0.073 Score=45.40 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHH
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
.....|+|+|.+|+|||||...+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHcC
Confidence 3456889999999999999999886
No 454
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.87 E-value=0.058 Score=49.35 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.+++|.|+.|+|||||.+.++--
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 48999999999999999998864
No 455
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.84 E-value=0.1 Score=46.51 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHH
Q 036788 36 VEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIF 71 (352)
Q Consensus 36 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~ 71 (352)
++++.+.+. -.+++|.|.+|+|||||.+.+.
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH
Confidence 455555543 1488999999999999999998
No 456
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.81 E-value=0.06 Score=44.37 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
..-|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998763
No 457
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.81 E-value=0.06 Score=49.47 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.+++|.|+.|+|||||.+.++--
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 48999999999999999998864
No 458
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.77 E-value=0.063 Score=44.39 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
..-|+|.|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999998873
No 459
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.76 E-value=0.061 Score=49.39 Aligned_cols=23 Identities=39% Similarity=0.355 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.+++|.|+.|+|||||.+.++--
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 58999999999999999998863
No 460
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.76 E-value=0.087 Score=45.53 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=26.2
Q ss_pred CeEEEEEE-cCCCchHHHHHHHHHHHhhCCCCceEEE
Q 036788 49 DVYALGIW-GIGGIGKTTIARAIFDKISSNFEGSCCH 84 (352)
Q Consensus 49 ~~~vv~I~-G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 84 (352)
..++|+|+ +-||+||||+|..++..+...-..++.+
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 41 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLV 41 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEE
Confidence 45688887 6789999999999999765442233434
No 461
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.75 E-value=0.089 Score=43.00 Aligned_cols=23 Identities=26% Similarity=0.668 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
..-|+|+|.+|+|||||..++..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 45688999999999999999887
No 462
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.73 E-value=0.13 Score=41.73 Aligned_cols=24 Identities=29% Similarity=0.210 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
....|+|+|.+|+|||||..++..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346788999999999999999885
No 463
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=92.73 E-value=0.25 Score=43.49 Aligned_cols=52 Identities=15% Similarity=0.092 Sum_probs=34.5
Q ss_pred hhHHHHHHHhc--CCCCCeEEEEEEc-CCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 34 SRVEEIESLLG--AGSKDVYALGIWG-IGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 34 ~~~~~l~~~L~--~~~~~~~vv~I~G-~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
+.++.|...|. ......++|+|+| -||+||||+|..++..+...-..++.++
T Consensus 74 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 74 EAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 34455554443 2234567888886 5899999999999998766544455554
No 464
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.73 E-value=0.12 Score=49.70 Aligned_cols=33 Identities=21% Similarity=0.065 Sum_probs=25.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
+.++|.|.+|+|||+|+..+++.... +..+|+.
T Consensus 233 qr~~Ifgg~g~GKT~L~~~ia~~~~~--~v~V~~~ 265 (600)
T 3vr4_A 233 GAAAVPGPFGAGKTVVQHQIAKWSDV--DLVVYVG 265 (600)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSSC--SEEEEEE
T ss_pred CEEeeecCCCccHHHHHHHHHhccCC--CEEEEEE
Confidence 57899999999999999999886432 3444443
No 465
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=92.72 E-value=0.11 Score=43.54 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=22.1
Q ss_pred EEEEEEcC-CCchHHHHHHHHHHHhhCC
Q 036788 51 YALGIWGI-GGIGKTTIARAIFDKISSN 77 (352)
Q Consensus 51 ~vv~I~G~-gGiGKTtLa~~~~~~~~~~ 77 (352)
++|+|.|. ||+||||+|..++..+..+
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~ 29 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAA 29 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 57788874 8999999999999976544
No 466
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.70 E-value=0.076 Score=42.76 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=20.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
....|+|.|.+|+|||||...+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456788999999999999988764
No 467
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.70 E-value=0.072 Score=47.58 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
+....|+|+|.+|+|||||..++...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 44689999999999999999998863
No 468
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.67 E-value=0.066 Score=43.74 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
..-|+|.|.+|+|||||..++...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999874
No 469
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=92.66 E-value=0.2 Score=46.33 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=23.4
Q ss_pred CCeEEEEEE-cCCCchHHHHHHHHHHHhh
Q 036788 48 KDVYALGIW-GIGGIGKTTIARAIFDKIS 75 (352)
Q Consensus 48 ~~~~vv~I~-G~gGiGKTtLa~~~~~~~~ 75 (352)
...++|+|+ |-||+||||+|..++..+.
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La 134 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMR 134 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHH
Confidence 346788877 7899999999999998765
No 470
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.66 E-value=0.065 Score=44.08 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.--|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998753
No 471
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.66 E-value=0.048 Score=49.76 Aligned_cols=23 Identities=43% Similarity=0.544 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.+++|.|+.|+|||||.+.++--
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999998864
No 472
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.65 E-value=0.066 Score=44.47 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.--|+|.|.+|+|||||...+...
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998863
No 473
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.62 E-value=0.067 Score=44.38 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
..-|+|.|.+|+|||||...+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 35788999999999999999886
No 474
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.62 E-value=0.077 Score=47.23 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
...|+|+|.+|+|||||..++...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999999873
No 475
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.61 E-value=0.082 Score=44.64 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.....|+|+|.+|+|||||...+...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568899999999999999998763
No 476
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.59 E-value=0.071 Score=44.21 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457889999999999999998863
No 477
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.57 E-value=0.062 Score=44.09 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
.--|+|.|.+|+|||||..++..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999998864
No 478
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.57 E-value=0.069 Score=44.14 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
...-|+|+|.+|+|||||...+..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhh
Confidence 356789999999999999999876
No 479
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.55 E-value=0.054 Score=44.52 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=19.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
..-|+|+|.+|+|||||...+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45788999999999999886665
No 480
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.54 E-value=0.071 Score=44.01 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
..-|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998873
No 481
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.53 E-value=0.072 Score=47.46 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHH
Q 036788 48 KDVYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 48 ~~~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
...+.|+|+|.+|+|||||..++..
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g 46 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVG 46 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHT
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHC
Confidence 3467899999999999999999875
No 482
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.52 E-value=0.066 Score=43.37 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
...-|+|.|.+|+|||||..++...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4467889999999999999998763
No 483
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.51 E-value=0.073 Score=44.55 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.--|+|+|.+|+|||||..++...
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999998874
No 484
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.50 E-value=0.067 Score=44.13 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
..--|+|.|.+|+|||||...+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 356788999999999999999875
No 485
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.45 E-value=0.068 Score=44.68 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
.--|+|+|.+|+|||||...+..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45788999999999999999875
No 486
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.43 E-value=0.3 Score=48.14 Aligned_cols=47 Identities=23% Similarity=0.199 Sum_probs=31.3
Q ss_pred hhHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 34 SRVEEIESLLGAGSKDVYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 34 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+.+.+...+. .++..|+|++|+|||+++..+...+...-...+.+.
T Consensus 184 ~Q~~av~~~l~-----~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~ 230 (624)
T 2gk6_A 184 SQVYAVKTVLQ-----RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 230 (624)
T ss_dssp HHHHHHHHHHT-----CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred HHHHHHHHHhc-----CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 34444555453 136789999999999999988877654333445554
No 487
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=92.41 E-value=0.15 Score=44.23 Aligned_cols=37 Identities=24% Similarity=0.161 Sum_probs=26.6
Q ss_pred CCeEEEEEE-cCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 48 KDVYALGIW-GIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 48 ~~~~vv~I~-G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
...++|+|+ |-||+||||+|..++..+. .-..++.++
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD 62 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLID 62 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEE
Confidence 346788885 5789999999999999877 433344443
No 488
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.39 E-value=0.084 Score=46.08 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 036788 51 YALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
..|+|.|.+|+|||||..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998763
No 489
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=92.38 E-value=0.15 Score=43.21 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=25.2
Q ss_pred EEEEEEc-CCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWG-IGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G-~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
++|+|+| -||+||||+|..++..+...-..++.+.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVD 38 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 5677764 6899999999999997755433344443
No 490
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.35 E-value=0.043 Score=44.33 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=10.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
..-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457889999999999999988753
No 491
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.35 E-value=0.093 Score=42.62 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 036788 49 DVYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 49 ~~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
..--|+|+|.+|+|||||..++..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 445788999999999999998753
No 492
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=92.34 E-value=0.11 Score=47.64 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=26.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
+++.+.|-||+||||+|..++......-..+..++
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd 37 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAG 37 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Confidence 57888999999999999999987654433444444
No 493
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.34 E-value=0.06 Score=47.96 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=18.5
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036788 52 ALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 52 vv~I~G~gGiGKTtLa~~~~~ 72 (352)
-|+|+|.+|+|||||...++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999999764
No 494
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.31 E-value=0.06 Score=49.29 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=26.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEee
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQN 86 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 86 (352)
..++|+|..|+|||||++.+...+.. -...+.+.+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie~ 210 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIED 210 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEECC
Confidence 48999999999999999999875433 234455543
No 495
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.29 E-value=0.14 Score=49.34 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=27.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
-.+++|.|.+|+|||||++.++......-..++++.
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 358999999999999999999987654322234543
No 496
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.28 E-value=0.066 Score=43.30 Aligned_cols=24 Identities=29% Similarity=0.209 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDK 73 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~ 73 (352)
.--|+|+|.+|+|||||..++...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999998863
No 497
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.28 E-value=0.068 Score=43.71 Aligned_cols=29 Identities=17% Similarity=0.084 Sum_probs=22.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 53 LGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 53 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
+.|+|.+|+||||+|.+++.. -..++|+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yia 30 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIA 30 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEe
Confidence 679999999999999998855 12456665
No 498
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.27 E-value=0.21 Score=41.93 Aligned_cols=81 Identities=10% Similarity=-0.075 Sum_probs=41.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh-CCCCceEEEeeccccccCCCChHHHHHHHHHHHhcccc--cCCCHHHHHHHhC
Q 036788 50 VYALGIWGIGGIGKTTIARAIFDKIS-SNFEGSCCHQNVREESRRPGGLGCLQQILLSKLLQEKN--AILDIALSFRRLS 126 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~--~~~~~~~l~~~l~ 126 (352)
-.+..|+|.-|.||||.+...+++.. ......++-... +-..-...+.+.++...+ .+.+...+...+.
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~--------D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i~ 99 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAI--------DDRYHKEKVVSHNGNAIEAINISKASEIMTHDL 99 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-------------------CBTTBCCEEEEESSGGGGGGSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEecc--------CCcchhhhHHHhcCCceeeEEeCCHHHHHHHHh
Confidence 36888999999999996555555543 334443333211 111112244444444333 2222334444455
Q ss_pred CCcEEEEEeCCC
Q 036788 127 SRKFLIVLDDET 138 (352)
Q Consensus 127 ~k~~LlVlDdv~ 138 (352)
++...|++|.+.
T Consensus 100 ~~~dvV~IDEaQ 111 (219)
T 3e2i_A 100 TNVDVIGIDEVQ 111 (219)
T ss_dssp TTCSEEEECCGG
T ss_pred cCCCEEEEechh
Confidence 666788899973
No 499
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.25 E-value=0.074 Score=43.52 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 036788 50 VYALGIWGIGGIGKTTIARAIFD 72 (352)
Q Consensus 50 ~~vv~I~G~gGiGKTtLa~~~~~ 72 (352)
..-|+|.|.+|+|||||...+..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45688999999999999999875
No 500
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.24 E-value=0.076 Score=49.09 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=25.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 036788 51 YALGIWGIGGIGKTTIARAIFDKISSNFEGSCCHQ 85 (352)
Q Consensus 51 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 85 (352)
.+++|.|+.|+|||||.+.++.-.. ..+.+++.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~~--~~G~I~i~ 80 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQID 80 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCSE--EEEEEEES
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC--CCeEEEEC
Confidence 5899999999999999999986433 34556654
Done!