Your job contains 1 sequence.
>036790
GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN
IPAPFRMALPTPPLPPPVPAASAPQPPPVPRSVPVQPTPPPIADLSSSESEMEFSDEVMS
F
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 036790
(121 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2195311 - symbol:AT1G09230 species:3702 "Arabi... 286 5.9e-25 1
ZFIN|ZDB-GENE-060312-35 - symbol:rnpc3 "RNA-binding regio... 199 4.2e-15 1
UNIPROTKB|F1PE39 - symbol:RNPC3 "Uncharacterized protein"... 191 3.3e-14 1
UNIPROTKB|A8K1C9 - symbol:RNPC3 "cDNA FLJ77710" species:9... 189 5.4e-14 1
UNIPROTKB|Q96LT9 - symbol:RNPC3 "RNA-binding protein 40" ... 189 5.4e-14 1
MGI|MGI:1914475 - symbol:Rnpc3 "RNA-binding region (RNP1,... 188 6.9e-14 1
RGD|1582776 - symbol:Rnpc3 "RNA-binding region (RNP1, RRM... 188 6.9e-14 1
UNIPROTKB|F1MJQ8 - symbol:RNPC3 "RNA-binding protein 40" ... 188 6.9e-14 1
UNIPROTKB|Q3MHP0 - symbol:RNPC3 "RNA-binding protein 40" ... 188 6.9e-14 1
UNIPROTKB|F1S572 - symbol:LOC100522864 "Uncharacterized p... 188 6.9e-14 1
UNIPROTKB|F1NVY1 - symbol:RNPC3 "Uncharacterized protein"... 182 2.8e-13 1
>TAIR|locus:2195311 [details] [associations]
symbol:AT1G09230 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 KO:K13157 OMA:KESEYES HSSP:P09012 EMBL:AY091076
EMBL:AY122947 IPI:IPI00518543 RefSeq:NP_172394.1 UniGene:At.21135
UniGene:At.66808 ProteinModelPortal:Q8RWV8 SMR:Q8RWV8 IntAct:Q8RWV8
EnsemblPlants:AT1G09230.1 GeneID:837443 KEGG:ath:AT1G09230
TAIR:At1g09230 HOGENOM:HOG000030409 InParanoid:Q8RWV8
PhylomeDB:Q8RWV8 ProtClustDB:CLSN2679239 ArrayExpress:Q8RWV8
Genevestigator:Q8RWV8 Uniprot:Q8RWV8
Length = 442
Score = 286 (105.7 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 50/67 (74%), Positives = 57/67 (85%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + + EPIAP+LG+DYPFPPHL+YAYPP D NIL NI NALIAVP YTQVLHLMNKMN
Sbjct: 134 GQILSGEPIAPKLGIDYPFPPHLQYAYPPPDANILANITNALIAVPPLYTQVLHLMNKMN 193
Query: 61 IPAPFRM 67
+P PFR+
Sbjct: 194 LPPPFRL 200
>ZFIN|ZDB-GENE-060312-35 [details] [associations]
symbol:rnpc3 "RNA-binding region (RNP1, RRM)
containing 3" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-060312-35 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:55599 eggNOG:NOG128363
HOGENOM:HOG000007217 HOVERGEN:HBG057088 KO:K13157 OrthoDB:EOG46DM34
EMBL:BC114288 IPI:IPI00500928 RefSeq:NP_001035019.1
UniGene:Dr.79649 ProteinModelPortal:Q29RB3 GeneID:565672
KEGG:dre:565672 InParanoid:Q29RB3 NextBio:20885998
ArrayExpress:Q29RB3 Uniprot:Q29RB3
Length = 505
Score = 199 (75.1 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 38/66 (57%), Positives = 48/66 (72%)
Query: 2 SVPAAEP-IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
SVP + IAP LG+ + P L+Y YPP ILTNI + L++VP+FY QVLHLMNKMN
Sbjct: 122 SVPLMDTSIAPSLGLKFQTNPTLKYLYPPPSSGILTNITHTLLSVPKFYVQVLHLMNKMN 181
Query: 61 IPAPFR 66
+P+PFR
Sbjct: 182 LPSPFR 187
>UNIPROTKB|F1PE39 [details] [associations]
symbol:RNPC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
CTD:55599 KO:K13157 OMA:KESEYES GeneTree:ENSGT00530000063786
EMBL:AAEX03004757 EMBL:AAEX03004758 RefSeq:XP_547257.3
Ensembl:ENSCAFT00000031786 GeneID:490136 KEGG:cfa:490136
Uniprot:F1PE39
Length = 518
Score = 191 (72.3 bits), Expect = 3.3e-14, P = 3.3e-14
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 136 GCITIENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 195
Query: 61 IPAPF 65
+P PF
Sbjct: 196 LPTPF 200
>UNIPROTKB|A8K1C9 [details] [associations]
symbol:RNPC3 "cDNA FLJ77710" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000007217
HOVERGEN:HBG057088 EMBL:BX322653 EMBL:AC095032 EMBL:AC105272
UniGene:Hs.632423 HGNC:HGNC:18666 ChiTaRS:RNPC3 EMBL:AK289844
IPI:IPI00923554 SMR:A8K1C9 STRING:A8K1C9 Ensembl:ENST00000524631
UCSC:uc010oum.1 Uniprot:A8K1C9
Length = 516
Score = 189 (71.6 bits), Expect = 5.4e-14, P = 5.4e-14
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 135 GYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194
Query: 61 IPAPF 65
+P PF
Sbjct: 195 LPTPF 199
>UNIPROTKB|Q96LT9 [details] [associations]
symbol:RNPC3 "RNA-binding protein 40" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IC] [GO:0005689
"U12-type spliceosomal complex" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097
GO:GO:0005689 CTD:55599 eggNOG:NOG128363 HOVERGEN:HBG057088
KO:K13157 OrthoDB:EOG46DM34 EMBL:AY099329 EMBL:BK005195
EMBL:AB058742 EMBL:AK000015 EMBL:AK057799 EMBL:BX322653
EMBL:AC095032 EMBL:AC105272 EMBL:BC010697 EMBL:AL137730
IPI:IPI00514393 PIR:T46396 RefSeq:NP_060089.1 UniGene:Hs.632423
PDB:3EGN PDBsum:3EGN ProteinModelPortal:Q96LT9 SMR:Q96LT9
IntAct:Q96LT9 MINT:MINT-1180654 STRING:Q96LT9 PhosphoSite:Q96LT9
DMDM:74760946 PaxDb:Q96LT9 PeptideAtlas:Q96LT9 PRIDE:Q96LT9
DNASU:55599 Ensembl:ENST00000423855 Ensembl:ENST00000531883
Ensembl:ENST00000533099 GeneID:55599 KEGG:hsa:55599 UCSC:uc010oul.1
GeneCards:GC01P104068 HGNC:HGNC:18666 neXtProt:NX_Q96LT9
PharmGKB:PA134865246 InParanoid:Q96LT9 OMA:KESEYES ChiTaRS:RNPC3
EvolutionaryTrace:Q96LT9 GenomeRNAi:55599 NextBio:60134
ArrayExpress:Q96LT9 Bgee:Q96LT9 CleanEx:HS_RNPC3
Genevestigator:Q96LT9 Uniprot:Q96LT9
Length = 517
Score = 189 (71.6 bits), Expect = 5.4e-14, P = 5.4e-14
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 135 GYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194
Query: 61 IPAPF 65
+P PF
Sbjct: 195 LPTPF 199
>MGI|MGI:1914475 [details] [associations]
symbol:Rnpc3 "RNA-binding region (RNP1, RRM) containing 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1914475 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005689 HSSP:Q96IZ5 CTD:55599 eggNOG:NOG128363
HOGENOM:HOG000007217 HOVERGEN:HBG057088 KO:K13157 OrthoDB:EOG46DM34
OMA:KESEYES EMBL:AK013288 EMBL:AK134241 EMBL:AK161063 EMBL:BC016603
EMBL:BC043695 EMBL:AK173272 IPI:IPI00831482 IPI:IPI00831582
RefSeq:NP_001033785.1 RefSeq:NP_080319.2 UniGene:Mm.316928
ProteinModelPortal:Q3UZ01 SMR:Q3UZ01 STRING:Q3UZ01
PhosphoSite:Q3UZ01 PRIDE:Q3UZ01 Ensembl:ENSMUST00000092154
Ensembl:ENSMUST00000106535 Ensembl:ENSMUST00000106536 GeneID:67225
KEGG:mmu:67225 UCSC:uc008rbd.1 UCSC:uc008rbf.1
GeneTree:ENSGT00530000063786 InParanoid:Q3UZ01 NextBio:323936
Bgee:Q3UZ01 CleanEx:MM_RNPC3 Genevestigator:Q3UZ01 Uniprot:Q3UZ01
Length = 514
Score = 188 (71.2 bits), Expect = 6.9e-14, P = 6.9e-14
Identities = 35/57 (61%), Positives = 41/57 (71%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199
>RGD|1582776 [details] [associations]
symbol:Rnpc3 "RNA-binding region (RNP1, RRM) containing 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1582776
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005689
HSSP:Q96IZ5 CTD:55599 eggNOG:NOG128363 HOGENOM:HOG000007217
HOVERGEN:HBG057088 KO:K13157 OrthoDB:EOG46DM34 OMA:KESEYES
GeneTree:ENSGT00530000063786 EMBL:AABR03021470 EMBL:AABR03019434
EMBL:AABR03018538 EMBL:AABR03019699 EMBL:BC098742 IPI:IPI00214747
RefSeq:NP_001094280.1 UniGene:Rn.17587 ProteinModelPortal:Q4G055
STRING:Q4G055 PRIDE:Q4G055 Ensembl:ENSRNOT00000023366 GeneID:691538
KEGG:rno:691538 UCSC:RGD:1582776 InParanoid:Q4G055 NextBio:743263
ArrayExpress:Q4G055 Genevestigator:Q4G055 Uniprot:Q4G055
Length = 515
Score = 188 (71.2 bits), Expect = 6.9e-14, P = 6.9e-14
Identities = 35/57 (61%), Positives = 41/57 (71%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199
>UNIPROTKB|F1MJQ8 [details] [associations]
symbol:RNPC3 "RNA-binding protein 40" species:9913 "Bos
taurus" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
IPI:IPI00706852 UniGene:Bt.6645 OMA:KESEYES
GeneTree:ENSGT00530000063786 EMBL:DAAA02007691
Ensembl:ENSBTAT00000025416 Uniprot:F1MJQ8
Length = 516
Score = 188 (71.2 bits), Expect = 6.9e-14, P = 6.9e-14
Identities = 35/57 (61%), Positives = 41/57 (71%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199
>UNIPROTKB|Q3MHP0 [details] [associations]
symbol:RNPC3 "RNA-binding protein 40" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC105165 IPI:IPI00706852
RefSeq:NP_001070585.1 UniGene:Bt.6645 HSSP:Q96IZ5
ProteinModelPortal:Q3MHP0 PRIDE:Q3MHP0 GeneID:768060
KEGG:bta:768060 CTD:55599 eggNOG:NOG128363 HOGENOM:HOG000007217
HOVERGEN:HBG057088 InParanoid:Q3MHP0 KO:K13157 OrthoDB:EOG46DM34
NextBio:20918415 Uniprot:Q3MHP0
Length = 516
Score = 188 (71.2 bits), Expect = 6.9e-14, P = 6.9e-14
Identities = 35/57 (61%), Positives = 41/57 (71%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199
>UNIPROTKB|F1S572 [details] [associations]
symbol:LOC100522864 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:KESEYES
GeneTree:ENSGT00530000063786 EMBL:CU469487 EMBL:CU571185
Ensembl:ENSSSCT00000026127 Ensembl:ENSSSCT00000031693
Uniprot:F1S572
Length = 517
Score = 188 (71.2 bits), Expect = 6.9e-14, P = 6.9e-14
Identities = 35/57 (61%), Positives = 41/57 (71%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 145 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 201
>UNIPROTKB|F1NVY1 [details] [associations]
symbol:RNPC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
OMA:KESEYES GeneTree:ENSGT00530000063786 EMBL:AADN02012921
IPI:IPI00590374 Ensembl:ENSGALT00000008292 Uniprot:F1NVY1
Length = 490
Score = 182 (69.1 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 34/57 (59%), Positives = 40/57 (70%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NI NAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 119 IAPSHGLTFPINSCLKYLYPPPSSTILANIANALASVPKFYVQVLHLMNKMNLPPPF 175
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.144 0.448 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 121 71 0.00091 102 3 11 22 0.47 28
29 0.42 29
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 11
No. of states in DFA: 417 (44 KB)
Total size of DFA: 78 KB (2065 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.08u 0.21s 9.29t Elapsed: 00:00:01
Total cpu time: 9.08u 0.21s 9.29t Elapsed: 00:00:01
Start: Fri May 10 06:49:51 2013 End: Fri May 10 06:49:52 2013