BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036790
(121 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242035873|ref|XP_002465331.1| hypothetical protein SORBIDRAFT_01g036600 [Sorghum bicolor]
gi|241919185|gb|EER92329.1| hypothetical protein SORBIDRAFT_01g036600 [Sorghum bicolor]
Length = 467
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/87 (82%), Positives = 77/87 (88%), Gaps = 2/87 (2%)
Query: 6 AEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
AEPIAP+LGVDYPFPPHLEYAYPP DGNILTNIVNALIAVPRFY QVLHLMNKMN+PAPF
Sbjct: 153 AEPIAPKLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYNQVLHLMNKMNLPAPF 212
Query: 66 RMALPTPPLPPPVPAASAPQPPPVPRS 92
RMALPTPPLP +P P P P+P+S
Sbjct: 213 RMALPTPPLPSQLPV--TPHPQPLPQS 237
>gi|115452785|ref|NP_001049993.1| Os03g0326600 [Oryza sativa Japonica Group]
gi|108707928|gb|ABF95723.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548464|dbj|BAF11907.1| Os03g0326600 [Oryza sativa Japonica Group]
gi|218192743|gb|EEC75170.1| hypothetical protein OsI_11395 [Oryza sativa Indica Group]
Length = 467
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/72 (93%), Positives = 70/72 (97%)
Query: 3 VPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIP 62
+ +AEPIAPRLGVDYPFPPHLEYAYPP DGNILTNIVNALIAVPRFYTQVLHLMNKMN+P
Sbjct: 150 ISSAEPIAPRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNLP 209
Query: 63 APFRMALPTPPL 74
APFRMALPTPPL
Sbjct: 210 APFRMALPTPPL 221
>gi|222624851|gb|EEE58983.1| hypothetical protein OsJ_10687 [Oryza sativa Japonica Group]
Length = 560
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/72 (93%), Positives = 70/72 (97%)
Query: 3 VPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIP 62
+ +AEPIAPRLGVDYPFPPHLEYAYPP DGNILTNIVNALIAVPRFYTQVLHLMNKMN+P
Sbjct: 243 ISSAEPIAPRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNLP 302
Query: 63 APFRMALPTPPL 74
APFRMALPTPPL
Sbjct: 303 APFRMALPTPPL 314
>gi|414866588|tpg|DAA45145.1| TPA: hypothetical protein ZEAMMB73_529929 [Zea mays]
Length = 396
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/73 (90%), Positives = 68/73 (93%)
Query: 6 AEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
AEPIAP+L VDYPFPPHLEYAYPP DGNILTNIVNALIAVPRFY QVLHLMNKMN+PAPF
Sbjct: 136 AEPIAPKLSVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYNQVLHLMNKMNLPAPF 195
Query: 66 RMALPTPPLPPPV 78
RMALPTPPLP V
Sbjct: 196 RMALPTPPLPSQV 208
>gi|212721632|ref|NP_001132325.1| uncharacterized protein LOC100193767 [Zea mays]
gi|194694084|gb|ACF81126.1| unknown [Zea mays]
gi|414866589|tpg|DAA45146.1| TPA: hypothetical protein ZEAMMB73_529929 [Zea mays]
gi|414866590|tpg|DAA45147.1| TPA: hypothetical protein ZEAMMB73_529929 [Zea mays]
Length = 450
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/73 (90%), Positives = 68/73 (93%)
Query: 6 AEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
AEPIAP+L VDYPFPPHLEYAYPP DGNILTNIVNALIAVPRFY QVLHLMNKMN+PAPF
Sbjct: 136 AEPIAPKLSVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYNQVLHLMNKMNLPAPF 195
Query: 66 RMALPTPPLPPPV 78
RMALPTPPLP V
Sbjct: 196 RMALPTPPLPSQV 208
>gi|357128643|ref|XP_003565980.1| PREDICTED: RNA-binding protein 40-like [Brachypodium distachyon]
Length = 455
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 68/73 (93%)
Query: 2 SVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNI 61
S AEPIA +LGVDYPFPPHLEYAYPP DGNILTNIVN+LIAVPRFYTQVLHLMNKMN+
Sbjct: 139 STSTAEPIASKLGVDYPFPPHLEYAYPPPDGNILTNIVNSLIAVPRFYTQVLHLMNKMNL 198
Query: 62 PAPFRMALPTPPL 74
PAPFRMALPTPPL
Sbjct: 199 PAPFRMALPTPPL 211
>gi|255568988|ref|XP_002525464.1| RNA binding protein, putative [Ricinus communis]
gi|223535277|gb|EEF36954.1| RNA binding protein, putative [Ricinus communis]
Length = 450
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/66 (95%), Positives = 64/66 (96%)
Query: 2 SVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNI 61
SVPA+EPIAPRLGVDYPFPPHLEY YPP DGNILTNIVNALIAVPRFYTQVLHLMNKMNI
Sbjct: 125 SVPASEPIAPRLGVDYPFPPHLEYTYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNI 184
Query: 62 PAPFRM 67
PAPFRM
Sbjct: 185 PAPFRM 190
>gi|359477912|ref|XP_002270244.2| PREDICTED: RNA-binding protein 40-like [Vitis vinifera]
gi|298205172|emb|CBI17231.3| unnamed protein product [Vitis vinifera]
Length = 463
Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/68 (91%), Positives = 65/68 (95%)
Query: 2 SVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNI 61
S+PA+EPIA RLG+DYPFPPHLEYAYPP DGNILTNIVNALIAVPRFY QVLHLMNKMNI
Sbjct: 136 SLPASEPIAARLGIDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYVQVLHLMNKMNI 195
Query: 62 PAPFRMAL 69
PAPFRMAL
Sbjct: 196 PAPFRMAL 203
>gi|224123704|ref|XP_002319145.1| predicted protein [Populus trichocarpa]
gi|222857521|gb|EEE95068.1| predicted protein [Populus trichocarpa]
Length = 346
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/69 (94%), Positives = 67/69 (97%), Gaps = 1/69 (1%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQ-VLHLMNKM 59
GS+PA+EPIAPRLGVDYPFPPHLEYAYPP DGNILTNIVNALIAVPRFYTQ VLHLMNKM
Sbjct: 17 GSLPASEPIAPRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVVLHLMNKM 76
Query: 60 NIPAPFRMA 68
NIPAPFRMA
Sbjct: 77 NIPAPFRMA 85
>gi|224144758|ref|XP_002325403.1| predicted protein [Populus trichocarpa]
gi|222862278|gb|EEE99784.1| predicted protein [Populus trichocarpa]
Length = 420
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/67 (92%), Positives = 64/67 (95%)
Query: 2 SVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNI 61
S PA+EPIAPRLGVDYPFPPHLEYAYPP DGNILTNIVNALIAVPRFYTQVLHLMNKMNI
Sbjct: 144 SFPASEPIAPRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNI 203
Query: 62 PAPFRMA 68
PAPFR+
Sbjct: 204 PAPFRIG 210
>gi|357508623|ref|XP_003624600.1| RNA-binding protein [Medicago truncatula]
gi|355499615|gb|AES80818.1| RNA-binding protein [Medicago truncatula]
Length = 492
Score = 130 bits (327), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 62/69 (89%), Positives = 63/69 (91%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G P EPIA R+GVDYPFPPHLEYAYPP DGNILTNIVNALIAVPRFYTQVLHLMNKMN
Sbjct: 138 GGFPIPEPIAHRIGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMN 197
Query: 61 IPAPFRMAL 69
IPAPFRMAL
Sbjct: 198 IPAPFRMAL 206
>gi|356570297|ref|XP_003553326.1| PREDICTED: RNA-binding protein 40-like [Glycine max]
Length = 452
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/69 (89%), Positives = 65/69 (94%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G++P EPIA RLGV+YPFPPHLEYAYPP DGNILTNIVNALIAVPRFYTQVLHLMNKMN
Sbjct: 146 GALPIPEPIADRLGVNYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMN 205
Query: 61 IPAPFRMAL 69
IPAPFRMAL
Sbjct: 206 IPAPFRMAL 214
>gi|356560981|ref|XP_003548764.1| PREDICTED: uncharacterized protein LOC100818499 [Glycine max]
Length = 456
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/69 (89%), Positives = 64/69 (92%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G +P EPIA RLGV+YPFPPHLEYAYPP DGNILTNIVNALIAVPRFYTQVLHLMNKMN
Sbjct: 136 GGLPIPEPIADRLGVNYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMN 195
Query: 61 IPAPFRMAL 69
IPAPFRMAL
Sbjct: 196 IPAPFRMAL 204
>gi|359478163|ref|XP_003632078.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 40-like [Vitis
vinifera]
Length = 463
Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/68 (85%), Positives = 61/68 (89%)
Query: 2 SVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNI 61
S+PA+EPIA RLG+DYPFPPHLEY DGNILTNIVNALIAVPRFY QVLHLMNKMNI
Sbjct: 136 SLPASEPIAARLGIDYPFPPHLEYVXSHPDGNILTNIVNALIAVPRFYVQVLHLMNKMNI 195
Query: 62 PAPFRMAL 69
PAPFRMAL
Sbjct: 196 PAPFRMAL 203
>gi|15217461|ref|NP_172394.1| U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Arabidopsis
thaliana]
gi|20258828|gb|AAM13896.1| unknown protein [Arabidopsis thaliana]
gi|21689717|gb|AAM67480.1| unknown protein [Arabidopsis thaliana]
gi|332190295|gb|AEE28416.1| U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Arabidopsis
thaliana]
Length = 442
Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/82 (71%), Positives = 67/82 (81%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + + EPIAP+LG+DYPFPPHL+YAYPP D NIL NI NALIAVP YTQVLHLMNKMN
Sbjct: 134 GQILSGEPIAPKLGIDYPFPPHLQYAYPPPDANILANITNALIAVPPLYTQVLHLMNKMN 193
Query: 61 IPAPFRMALPTPPLPPPVPAAS 82
+P PFR+ALPTPPLP P +
Sbjct: 194 LPPPFRLALPTPPLPKAGPQQT 215
>gi|227204327|dbj|BAH57015.1| AT1G09230 [Arabidopsis thaliana]
Length = 375
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/82 (71%), Positives = 67/82 (81%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + + EPIAP+LG+DYPFPPHL+YAYPP D NIL NI NALIAVP YTQVLHLMNKMN
Sbjct: 134 GQILSGEPIAPKLGIDYPFPPHLQYAYPPPDANILANITNALIAVPPLYTQVLHLMNKMN 193
Query: 61 IPAPFRMALPTPPLPPPVPAAS 82
+P PFR+ALPTPPLP P +
Sbjct: 194 LPPPFRLALPTPPLPKAGPQQT 215
>gi|297849226|ref|XP_002892494.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297338336|gb|EFH68753.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 438
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 66/79 (83%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + + EPIAP+LG++YPFPPHL+YAYPP D NIL NI NALIAVP YTQVLHLMNKMN
Sbjct: 134 GQMLSGEPIAPKLGINYPFPPHLQYAYPPPDANILANITNALIAVPPLYTQVLHLMNKMN 193
Query: 61 IPAPFRMALPTPPLPPPVP 79
+P PFR+ALPTPPLP P
Sbjct: 194 LPPPFRLALPTPPLPKGGP 212
>gi|302811317|ref|XP_002987348.1| hypothetical protein SELMODRAFT_235257 [Selaginella moellendorffii]
gi|300144983|gb|EFJ11663.1| hypothetical protein SELMODRAFT_235257 [Selaginella moellendorffii]
Length = 407
Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/78 (76%), Positives = 64/78 (82%)
Query: 7 EPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR 66
EPIAP LGVDYPFPPHLEYAYPP D NIL+NI +ALIAVP FYTQVLHLMNKMN+PAPFR
Sbjct: 120 EPIAPSLGVDYPFPPHLEYAYPPPDDNILSNISSALIAVPSFYTQVLHLMNKMNLPAPFR 179
Query: 67 MALPTPPLPPPVPAASAP 84
A+P PPLP A P
Sbjct: 180 PAVPKPPLPCAAGAQERP 197
>gi|168034238|ref|XP_001769620.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679162|gb|EDQ65613.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 457
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/60 (91%), Positives = 56/60 (93%)
Query: 7 EPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR 66
EPIAP LGVDYPFPP LEYAYPP DGNILTNIVN LIAVPRFYTQVLHLMNKMN+PAPFR
Sbjct: 148 EPIAPALGVDYPFPPQLEYAYPPPDGNILTNIVNTLIAVPRFYTQVLHLMNKMNLPAPFR 207
>gi|449444421|ref|XP_004139973.1| PREDICTED: RNA-binding protein 40-like [Cucumis sativus]
Length = 359
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 55/58 (94%), Positives = 55/58 (94%)
Query: 6 AEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPA 63
EPIA RLGVDYPFPPHLEYAYPP DGNILTNIVNALIAVPRFYTQVLHLMNKMNIPA
Sbjct: 31 GEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPA 88
>gi|3249110|gb|AAC24093.1| T12M4.6 [Arabidopsis thaliana]
Length = 467
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/95 (62%), Positives = 67/95 (70%), Gaps = 13/95 (13%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQ--------- 51
G + + EPIAP+LG+DYPFPPHL+YAYPP D NIL NI NALIAVP YTQ
Sbjct: 136 GQILSGEPIAPKLGIDYPFPPHLQYAYPPPDANILANITNALIAVPPLYTQVSFAVTVYV 195
Query: 52 ----VLHLMNKMNIPAPFRMALPTPPLPPPVPAAS 82
VLHLMNKMN+P PFR+ALPTPPLP P +
Sbjct: 196 LWIEVLHLMNKMNLPPPFRLALPTPPLPKAGPQQT 230
>gi|449475898|ref|XP_004154582.1| PREDICTED: RNA-binding protein 40-like [Cucumis sativus]
Length = 153
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/58 (94%), Positives = 55/58 (94%)
Query: 6 AEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPA 63
EPIA RLGVDYPFPPHLEYAYPP DGNILTNIVNALIAVPRFYTQVLHLMNKMNIPA
Sbjct: 31 GEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPA 88
>gi|156390212|ref|XP_001635165.1| predicted protein [Nematostella vectensis]
gi|156222256|gb|EDO43102.1| predicted protein [Nematostella vectensis]
Length = 476
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 50/66 (75%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMA 68
IAP+LG+ YP PHL Y YPP +ILTNI + L VP+FYTQVLHLMNKMN+PAPF
Sbjct: 129 IAPKLGLKYPGNPHLTYLYPPPTASILTNIAHTLACVPKFYTQVLHLMNKMNLPAPFGEV 188
Query: 69 LPTPPL 74
PTPP+
Sbjct: 189 TPTPPI 194
>gi|449666884|ref|XP_002155289.2| PREDICTED: uncharacterized protein LOC100208918 [Hydra
magnipapillata]
Length = 449
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 63/113 (55%), Gaps = 18/113 (15%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMA 68
I P+LG+ + FP HL Y YP + ILTNI NAL +P+FY QVLHLMNKMN+P PF
Sbjct: 118 ICPKLGITHEFPKHLSYQYPEPNVMILTNIANALATIPKFYNQVLHLMNKMNLPPPFS-- 175
Query: 69 LPTPPLPPPVPAASAPQPPPVPRSVPVQPTPPPIAD----LSSSESEMEFSDE 117
P L PP+P S+ +Q +D LSS ESE+E E
Sbjct: 176 --GPTLAPPIPG----------DSIQLQDVCVDTSDLHSFLSSGESELESDSE 216
>gi|260817846|ref|XP_002603796.1| hypothetical protein BRAFLDRAFT_114988 [Branchiostoma floridae]
gi|229289119|gb|EEN59807.1| hypothetical protein BRAFLDRAFT_114988 [Branchiostoma floridae]
Length = 425
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G++P IA LG+ Y P L Y YPP +IL NI N L AVP+ Y QVLHLMNKMN
Sbjct: 130 GTLPQT-AIASSLGLQYVMNPRLHYLYPPPTASILNNIANTLAAVPKLYVQVLHLMNKMN 188
Query: 61 IPAPFRMALPTPPLPPPVPAASAPQPPPVPRSVPVQPTPPPIADLS-------SSESEME 113
+PAPF PPLP P + QP P P V QP + + +E ++E
Sbjct: 189 LPAPFGPLTQQPPLPRP-----STQPAPAPGEVFEQPEGVGVKKIELNLPSAIEAERQVE 243
Query: 114 FSDE 117
DE
Sbjct: 244 EDDE 247
>gi|196009462|ref|XP_002114596.1| hypothetical protein TRIADDRAFT_58601 [Trichoplax adhaerens]
gi|190582658|gb|EDV22730.1| hypothetical protein TRIADDRAFT_58601 [Trichoplax adhaerens]
Length = 466
Score = 80.9 bits (198), Expect = 9e-14, Method: Composition-based stats.
Identities = 35/54 (64%), Positives = 44/54 (81%)
Query: 8 PIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNI 61
P+A LG++YP PP L Y YP + ILTNIVNA++AVP+FYTQVLHLMN+MN+
Sbjct: 122 PVAANLGLNYPSPPDLHYLYPEANIMILTNIVNAMLAVPKFYTQVLHLMNRMNL 175
>gi|432927341|ref|XP_004080978.1| PREDICTED: RNA-binding protein 40-like [Oryzias latipes]
Length = 500
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 44/57 (77%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
+AP LG+ Y P L+Y YPP +ILTNIV+ALI+VP+ Y QVLHLMNKMN+P PF
Sbjct: 129 VAPNLGLKYQSNPTLKYLYPPPSNSILTNIVHALISVPKLYVQVLHLMNKMNLPCPF 185
>gi|444724714|gb|ELW65312.1| Pancreatic alpha-amylase [Tupaia chinensis]
Length = 1003
Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 37/66 (56%), Positives = 44/66 (66%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMA 68
IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 104 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 163
Query: 69 LPTPPL 74
PP+
Sbjct: 164 TARPPM 169
>gi|90093337|ref|NP_001035019.1| RNA-binding protein 40 [Danio rerio]
gi|89130616|gb|AAI14289.1| RNA-binding region (RNP1, RRM) containing 3 [Danio rerio]
Length = 505
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 44/58 (75%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR 66
IAP LG+ + P L+Y YPP ILTNI + L++VP+FY QVLHLMNKMN+P+PFR
Sbjct: 130 IAPSLGLKFQTNPTLKYLYPPPSSGILTNITHTLLSVPKFYVQVLHLMNKMNLPSPFR 187
>gi|317419755|emb|CBN81791.1| RNA-binding protein 40 [Dicentrarchus labrax]
Length = 511
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 48/66 (72%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMA 68
IAP LG+ + P L+Y YPP +ILTNI +ALI+VP+FY QVLHLMNKMN+P PF
Sbjct: 129 IAPSLGLKFQSNPTLKYLYPPPSNSILTNINHALISVPKFYVQVLHLMNKMNLPCPFGPI 188
Query: 69 LPTPPL 74
P PP+
Sbjct: 189 TPRPPM 194
>gi|345801621|ref|XP_547257.3| PREDICTED: RNA-binding protein 40 [Canis lupus familiaris]
Length = 518
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 136 GCITIENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 195
Query: 61 IPAPF 65
+P PF
Sbjct: 196 LPTPF 200
>gi|351699567|gb|EHB02486.1| RNA-binding protein 40 [Heterocephalus glaber]
Length = 517
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 135 GCLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194
Query: 61 IPAPF 65
+P PF
Sbjct: 195 LPTPF 199
>gi|348586942|ref|XP_003479227.1| PREDICTED: RNA-binding protein 40-like [Cavia porcellus]
Length = 517
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 135 GCLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194
Query: 61 IPAPF 65
+P PF
Sbjct: 195 LPTPF 199
>gi|390351660|ref|XP_783188.3| PREDICTED: RNA-binding protein 40-like [Strongylocentrotus
purpuratus]
Length = 530
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 54/82 (65%), Gaps = 6/82 (7%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMA 68
+AP G+ +P P L+Y YPP +IL+NIVNAL +VP+FY Q LHLMNKM++PAPF
Sbjct: 137 MAPDFGLSHPINPRLKYHYPPPTVSILSNIVNALASVPKFYVQTLHLMNKMSLPAPFGPL 196
Query: 69 LPTPPLP------PPVPAASAP 84
P PPL PP P +AP
Sbjct: 197 TPAPPLEDDQIVVPPEPEDNAP 218
>gi|431896426|gb|ELK05838.1| Alpha-amylase 1 [Pteropus alecto]
Length = 937
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/66 (56%), Positives = 44/66 (66%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMA 68
IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 127 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 186
Query: 69 LPTPPL 74
PP+
Sbjct: 187 TARPPM 192
>gi|432103902|gb|ELK30735.1| RNA-binding protein 40 [Myotis davidii]
Length = 515
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 135 GCLTIENGIAPNHGLTFPLDSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194
Query: 61 IPAPF 65
+P PF
Sbjct: 195 LPTPF 199
>gi|410967851|ref|XP_003990427.1| PREDICTED: RNA-binding protein 40 [Felis catus]
Length = 517
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 136 GCLTIENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 195
Query: 61 IPAPF 65
+P PF
Sbjct: 196 LPTPF 200
>gi|344275550|ref|XP_003409575.1| PREDICTED: RNA-binding protein 40 [Loxodonta africana]
Length = 517
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 46/74 (62%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 135 GCLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194
Query: 61 IPAPFRMALPTPPL 74
+P PF PPL
Sbjct: 195 LPTPFGPITARPPL 208
>gi|338725221|ref|XP_003365101.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 40-like [Equus
caballus]
Length = 580
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 199 GCLTIENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 258
Query: 61 IPAPF 65
+P PF
Sbjct: 259 LPTPF 263
>gi|348538447|ref|XP_003456702.1| PREDICTED: RNA-binding protein 40-like [Oreochromis niloticus]
Length = 508
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 44/57 (77%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
+AP LG+ + P L+Y YPP ILTNI++AL++VP+FY QVLHLMNKMN+P PF
Sbjct: 127 VAPSLGLKFQSNPTLKYLYPPPSNGILTNIMHALMSVPKFYVQVLHLMNKMNLPCPF 183
>gi|395821637|ref|XP_003784144.1| PREDICTED: RNA-binding protein 40 [Otolemur garnettii]
Length = 516
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 135 GCLTIENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194
Query: 61 IPAPF 65
+P PF
Sbjct: 195 LPTPF 199
>gi|349603263|gb|AEP99151.1| RNA-binding protein 40-like protein, partial [Equus caballus]
Length = 424
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 42 GCLTIENRIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 101
Query: 61 IPAPF 65
+P PF
Sbjct: 102 LPTPF 106
>gi|301790935|ref|XP_002930470.1| PREDICTED: RNA-binding protein 40-like, partial [Ailuropoda
melanoleuca]
Length = 589
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 207 GCLTIENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 266
Query: 61 IPAPF 65
+P PF
Sbjct: 267 LPTPF 271
>gi|355717002|gb|AES05792.1| RNA-binding region containing 3 [Mustela putorius furo]
Length = 513
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 133 GCLTIENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 192
Query: 61 IPAPF 65
+P PF
Sbjct: 193 LPTPF 197
>gi|346465485|gb|AEO32587.1| hypothetical protein [Amblyomma maculatum]
Length = 423
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 57/101 (56%), Gaps = 8/101 (7%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMA 68
++ LG+DY P L YAYPP + + NI L++VP+FYTQVLHLMNKMN+PAPF
Sbjct: 78 LSSDLGLDYVLNPMLTYAYPPATPSTVANIAAVLLSVPKFYTQVLHLMNKMNLPAPF--- 134
Query: 69 LPTPPLPPPVPAASAPQPPPVPRSVPVQPTPPPIADLSSSE 109
PP+P P S P V P AD++S +
Sbjct: 135 --GPPMPRPXDVQSVYTANP---GVVSGEAPQTAADVASGD 170
>gi|355558218|gb|EHH14998.1| hypothetical protein EGK_01023, partial [Macaca mulatta]
Length = 461
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 135 GYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194
Query: 61 IPAPF 65
+P PF
Sbjct: 195 LPTPF 199
>gi|355745490|gb|EHH50115.1| hypothetical protein EGM_00887, partial [Macaca fascicularis]
Length = 515
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 135 GYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194
Query: 61 IPAPF 65
+P PF
Sbjct: 195 LPTPF 199
>gi|40538732|ref|NP_060089.1| RNA-binding protein 40 [Homo sapiens]
gi|74760946|sp|Q96LT9.1|RBM40_HUMAN RecName: Full=RNA-binding protein 40; AltName: Full=RNA-binding
motif protein 40; AltName: Full=RNA-binding
region-containing protein 3; AltName: Full=U11/U12 small
nuclear ribonucleoprotein 65 kDa protein; Short=U11/U12
snRNP 65 kDa protein; Short=U11/U12-65K
gi|16553747|dbj|BAB71580.1| unnamed protein product [Homo sapiens]
gi|37543954|gb|AAM45139.1| RNA recognition protein [Homo sapiens]
gi|48427628|tpg|DAA05493.1| TPA_exp: U11/U12 snRNP 65K [Homo sapiens]
gi|56969191|gb|AAH10697.2| RNA-binding region (RNP1, RRM) containing 3 [Homo sapiens]
gi|119593307|gb|EAW72901.1| hCG2044817 [Homo sapiens]
gi|119593311|gb|EAW72905.1| hCG2044816, isoform CRA_a [Homo sapiens]
gi|119593312|gb|EAW72906.1| hCG2044816, isoform CRA_a [Homo sapiens]
gi|208965476|dbj|BAG72752.1| RNA-binding region (RNP1, RRM) containing 3 [synthetic construct]
Length = 517
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 135 GYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194
Query: 61 IPAPF 65
+P PF
Sbjct: 195 LPTPF 199
>gi|397495807|ref|XP_003818737.1| PREDICTED: RNA-binding protein 40 [Pan paniscus]
Length = 518
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 136 GYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 195
Query: 61 IPAPF 65
+P PF
Sbjct: 196 LPTPF 200
>gi|332809668|ref|XP_003308296.1| PREDICTED: RNA-binding protein 40 isoform 1 [Pan troglodytes]
gi|410214446|gb|JAA04442.1| RNA-binding region (RNP1, RRM) containing 3 [Pan troglodytes]
gi|410307708|gb|JAA32454.1| RNA-binding region (RNP1, RRM) containing 3 [Pan troglodytes]
gi|410328887|gb|JAA33390.1| RNA-binding region (RNP1, RRM) containing 3 [Pan troglodytes]
Length = 517
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 135 GYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194
Query: 61 IPAPF 65
+P PF
Sbjct: 195 LPTPF 199
>gi|441637137|ref|XP_003282014.2| PREDICTED: RNA-binding protein 40 [Nomascus leucogenys]
Length = 517
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 135 GYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194
Query: 61 IPAPF 65
+P PF
Sbjct: 195 LPTPF 199
>gi|158260711|dbj|BAF82533.1| unnamed protein product [Homo sapiens]
Length = 516
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 135 GYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194
Query: 61 IPAPF 65
+P PF
Sbjct: 195 LPTPF 199
>gi|197099048|ref|NP_001126576.1| RNA-binding protein 40 [Pongo abelii]
gi|75070522|sp|Q5R6C7.1|RBM40_PONAB RecName: Full=RNA-binding protein 40; AltName: Full=RNA-binding
motif protein 40; AltName: Full=RNA-binding
region-containing protein 3
gi|55731961|emb|CAH92689.1| hypothetical protein [Pongo abelii]
Length = 517
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 135 GYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194
Query: 61 IPAPF 65
+P PF
Sbjct: 195 LPTPF 199
>gi|417402186|gb|JAA47947.1| Putative spliceosomal protein snrnp-u1a/u2b [Desmodus rotundus]
Length = 517
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + +AP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 135 GCLTVENGVAPSHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194
Query: 61 IPAPF 65
+P PF
Sbjct: 195 LPTPF 199
>gi|384499818|gb|EIE90309.1| hypothetical protein RO3G_15020 [Rhizopus delemar RA 99-880]
Length = 294
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 46/60 (76%)
Query: 6 AEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
AEPIAP G++YP P+L Y YP +IL+NI +AL +VPR YTQVLHLMNKMN+P PF
Sbjct: 60 AEPIAPLHGINYPANPNLRYQYPDPTPDILSNISHALASVPRLYTQVLHLMNKMNMPPPF 119
>gi|402855450|ref|XP_003892337.1| PREDICTED: RNA-binding protein 40 [Papio anubis]
Length = 518
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 135 GYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194
Query: 61 IPAPF 65
+P PF
Sbjct: 195 LPTPF 199
>gi|403283796|ref|XP_003933288.1| PREDICTED: RNA-binding protein 40-like [Saimiri boliviensis
boliviensis]
Length = 515
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 134 GYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 193
Query: 61 IPAPF 65
+P PF
Sbjct: 194 LPTPF 198
>gi|47218419|emb|CAG12690.1| unnamed protein product [Tetraodon nigroviridis]
Length = 609
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 42/57 (73%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
+AP LG+ + P L+Y YPP ILTNI + LI+VP+FY QVLHLMNKMN+P PF
Sbjct: 129 VAPNLGLKFQSNPSLKYLYPPPSHGILTNITHTLISVPKFYVQVLHLMNKMNLPCPF 185
>gi|14017895|dbj|BAB47468.1| KIAA1839 protein [Homo sapiens]
Length = 541
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 159 GYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 218
Query: 61 IPAPF 65
+P PF
Sbjct: 219 LPTPF 223
>gi|426216081|ref|XP_004002297.1| PREDICTED: RNA-binding protein 40 [Ovis aries]
Length = 517
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 49/81 (60%), Gaps = 7/81 (8%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR-- 66
IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 202
Query: 67 -----MALPTPPLPPPVPAAS 82
M PL P+PA S
Sbjct: 203 TTRPPMYEDYMPLHAPLPATS 223
>gi|296208669|ref|XP_002751197.1| PREDICTED: RNA-binding protein 40 [Callithrix jacchus]
Length = 517
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 135 GYLTIENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194
Query: 61 IPAPF 65
+P PF
Sbjct: 195 LPTPF 199
>gi|345323736|ref|XP_001509729.2| PREDICTED: RNA-binding protein 40 [Ornithorhynchus anatinus]
Length = 516
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 44/65 (67%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP +IL NI NAL +VP+FY QVLHLMNKMN
Sbjct: 139 GCLTIENGIAPSHGLTFPLNSCLKYLYPPPSSSILANIANALASVPKFYVQVLHLMNKMN 198
Query: 61 IPAPF 65
+P+PF
Sbjct: 199 LPSPF 203
>gi|311254710|ref|XP_003125931.1| PREDICTED: RNA-binding protein 40-like [Sus scrofa]
gi|350583601|ref|XP_003481551.1| PREDICTED: RNA-binding protein 40 [Sus scrofa]
Length = 515
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 41/57 (71%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199
>gi|440904280|gb|ELR54816.1| RNA-binding protein 40 [Bos grunniens mutus]
Length = 517
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 41/57 (71%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199
>gi|116004451|ref|NP_001070585.1| RNA-binding protein 40 [Bos taurus]
gi|122144028|sp|Q3MHP0.1|RBM40_BOVIN RecName: Full=RNA-binding protein 40; AltName: Full=RNA-binding
motif protein 40; AltName: Full=RNA-binding
region-containing protein 3
gi|75775276|gb|AAI05166.1| RNA-binding region (RNP1, RRM) containing 3 [Bos taurus]
Length = 516
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 41/57 (71%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199
>gi|296489386|tpg|DAA31499.1| TPA: RNA-binding protein 40 [Bos taurus]
Length = 516
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 41/57 (71%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199
>gi|297279397|ref|XP_001108341.2| PREDICTED: RNA-binding protein 40-like [Macaca mulatta]
Length = 511
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 41/57 (71%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 136 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 192
>gi|189303595|ref|NP_001094280.1| RNA-binding protein 40 [Rattus norvegicus]
gi|160419222|sp|Q4G055.2|RBM40_RAT RecName: Full=RNA-binding protein 40; AltName: Full=RNA-binding
motif protein 40; AltName: Full=RNA-binding
region-containing protein 3
gi|149025759|gb|EDL82002.1| rCG28478 [Rattus norvegicus]
gi|183986085|gb|AAI66571.1| Rnpc3 protein [Rattus norvegicus]
Length = 515
Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 41/57 (71%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199
>gi|74140935|dbj|BAE22060.1| unnamed protein product [Mus musculus]
Length = 514
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 41/57 (71%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199
>gi|241695301|ref|XP_002413045.1| conserved hypothetical protein [Ixodes scapularis]
gi|215506859|gb|EEC16353.1| conserved hypothetical protein [Ixodes scapularis]
Length = 440
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 48/72 (66%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMA 68
++ LG+DY P L YAYPP + + NI LI+VP+FY QVLHLMNKMN+PAPF
Sbjct: 91 LSADLGLDYVLNPMLRYAYPPPSPSTVANIATMLISVPKFYNQVLHLMNKMNLPAPFGPL 150
Query: 69 LPTPPLPPPVPA 80
LP PP+ V A
Sbjct: 151 LPQPPMMQHVYA 162
>gi|31981077|ref|NP_080319.2| RNA-binding protein 40 [Mus musculus]
gi|84662758|ref|NP_001033785.1| RNA-binding protein 40 [Mus musculus]
gi|160419225|sp|Q3UZ01.2|RBM40_MOUSE RecName: Full=RNA-binding protein 40; AltName: Full=RNA-binding
motif protein 40; AltName: Full=RNA-binding
region-containing protein 3
gi|27695046|gb|AAH43695.1| RNA-binding region (RNP1, RRM) containing 3 [Mus musculus]
gi|148680462|gb|EDL12409.1| RNA-binding region (RNP1, RRM) containing 3 [Mus musculus]
Length = 514
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 41/57 (71%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199
>gi|74213761|dbj|BAB28770.3| unnamed protein product [Mus musculus]
Length = 283
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 41/57 (71%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199
>gi|74145491|dbj|BAE36180.1| unnamed protein product [Mus musculus]
Length = 513
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 41/57 (71%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199
>gi|50511129|dbj|BAD32550.1| mKIAA1839 protein [Mus musculus]
Length = 462
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 41/57 (71%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 91 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 147
>gi|71051116|gb|AAH98742.1| Rnpc3 protein [Rattus norvegicus]
Length = 423
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 41/57 (71%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 51 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 107
>gi|410908825|ref|XP_003967891.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 40-like
[Takifugu rubripes]
Length = 505
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 42/56 (75%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAP 64
+AP LG+ + P L+Y YPP ILTNI +ALI+VP+FY QVLHLMNKMN+P P
Sbjct: 129 VAPSLGLRFQSNPTLKYLYPPPSHGILTNITHALISVPKFYVQVLHLMNKMNLPCP 184
>gi|291398403|ref|XP_002715872.1| PREDICTED: RNA-binding region (RNP1, RRM) containing 3 [Oryctolagus
cuniculus]
Length = 516
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 40/57 (70%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IA G+ +P L+Y YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 142 IASNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 198
>gi|62858877|ref|NP_001016017.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
gi|115530784|emb|CAL49356.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
Length = 527
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 41/57 (71%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NI NAL +VP+FY QVLHLMNK+N+PAPF
Sbjct: 162 IAPNHGLLFPIKSSLKYLYPPPSSTILANIANALASVPKFYVQVLHLMNKLNLPAPF 218
>gi|166796977|gb|AAI59025.1| rnpc3 protein [Xenopus (Silurana) tropicalis]
Length = 520
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 41/57 (71%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NI NAL +VP+FY QVLHLMNK+N+PAPF
Sbjct: 155 IAPNHGLLFPIKSSLKYLYPPPSSTILANIANALASVPKFYVQVLHLMNKLNLPAPF 211
>gi|213624585|gb|AAI71301.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
gi|213627408|gb|AAI71275.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
Length = 527
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 41/57 (71%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NI NAL +VP+FY QVLHLMNK+N+PAPF
Sbjct: 162 IAPNHGLLFPIKSSLKYLYPPPSSTILANIANALASVPKFYVQVLHLMNKLNLPAPF 218
>gi|391339586|ref|XP_003744129.1| PREDICTED: RNA-binding protein 40-like [Metaseiulus occidentalis]
Length = 361
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 55/110 (50%), Gaps = 11/110 (10%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP L +Y P ++Y YPP++ IL NI AL FYTQVLHLMNKM
Sbjct: 43 GMIRKLHAIAPHLNFNYILNPMVKYKYPPINDTILANICEALRDNSNFYTQVLHLMNKMC 102
Query: 61 IPAPFRMALPTPPLPPPVPAASAPQPPPVPRSVPVQPTPPPIADLSSSES 110
IP PFR +P V S+ R Q T +DLS +E+
Sbjct: 103 IPPPFR----RKAVPSRVFQRSS-------RDTYTQITSDSESDLSDAEN 141
>gi|198425302|ref|XP_002121929.1| PREDICTED: similar to RNA-binding region (RNP1, RRM) containing 3
[Ciona intestinalis]
Length = 473
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 42/62 (67%)
Query: 8 PIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRM 67
PIAP G++Y P L+Y YP + +IL NI AL+ P+ YTQVLHLMNKMN+ PF
Sbjct: 124 PIAPHFGIEYYTNPKLKYKYPEPNSDILLNICGALLTTPKLYTQVLHLMNKMNLFPPFTT 183
Query: 68 AL 69
A+
Sbjct: 184 AM 185
>gi|443687814|gb|ELT90688.1| hypothetical protein CAPTEDRAFT_200790 [Capitella teleta]
Length = 440
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 46/72 (63%)
Query: 7 EPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR 66
+ ++ + G YP P L Y YPP + L NI +AL++VP+FY QVLHLMNKM++P PF
Sbjct: 130 DSVSHKWGCVYPINPQLSYLYPPPTESTLQNIASALVSVPKFYVQVLHLMNKMSLPVPFG 189
Query: 67 MALPTPPLPPPV 78
PPL P V
Sbjct: 190 PVTARPPLVPDV 201
>gi|90078134|dbj|BAE88747.1| unnamed protein product [Macaca fascicularis]
Length = 287
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 42/65 (64%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY QV HLMNKMN
Sbjct: 135 GYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVPHLMNKMN 194
Query: 61 IPAPF 65
+P PF
Sbjct: 195 LPTPF 199
>gi|405951102|gb|EKC19044.1| RNA-binding protein 40 [Crassostrea gigas]
Length = 488
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 44/61 (72%)
Query: 15 VDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPL 74
++YP P L Y YPP +I+TNI NAL + P+FY QVLHLMNK+N+PAPF TPP+
Sbjct: 131 MEYPRNPKLHYLYPPPTVSIVTNIANALASYPKFYVQVLHLMNKLNLPAPFGPVTSTPPI 190
Query: 75 P 75
P
Sbjct: 191 P 191
>gi|334323863|ref|XP_001381889.2| PREDICTED: RNA-binding protein 40 [Monodelphis domestica]
Length = 510
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 40/57 (70%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NI +AL +VP+FY QVLHLMNKMN+P PF
Sbjct: 142 IAPNHGLTFPLNSCLKYLYPPPSSTILANIASALASVPKFYVQVLHLMNKMNLPTPF 198
>gi|395535479|ref|XP_003769753.1| PREDICTED: RNA-binding protein 40 [Sarcophilus harrisii]
Length = 510
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 40/57 (70%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NI +AL +VP+FY QVLHLMNKMN+P PF
Sbjct: 142 IAPNHGLTFPLNSCLKYLYPPPSSTILANIASALASVPKFYVQVLHLMNKMNLPTPF 198
>gi|242012731|ref|XP_002427081.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212511339|gb|EEB14343.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 332
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 36/48 (75%)
Query: 18 PFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
P P HL+Y YP D LTNI+ LI VP+FYTQVLHLMNKMN+P PF
Sbjct: 125 PVPCHLKYQYPAPDKQALTNILKMLITVPKFYTQVLHLMNKMNLPCPF 172
>gi|358335678|dbj|GAA40549.2| U11/U12 small nuclear ribonucleoprotein 65 kDa protein, partial
[Clonorchis sinensis]
Length = 466
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 8 PIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR- 66
P+AP+ + P P L Y YPP +ILTNIV +++ P FYTQVLHLMN++++P PF
Sbjct: 61 PLAPKWDIWIPISPKLHYKYPPATESILTNIVRTMVSCPAFYTQVLHLMNRLHLPPPFVD 120
Query: 67 -MALPTPPLPPPVPAASAPQPPPVPRSVPVQPTPPPIADLS-SSESEME 113
P + P S + P + ++ DLS S+ESE+E
Sbjct: 121 PELFPGKLVVTAEPFVSRERSPDQQQVSKLKDDDGLEMDLSTSTESELE 169
>gi|449268122|gb|EMC78992.1| RNA-binding protein 40, partial [Columba livia]
Length = 449
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 41/64 (64%)
Query: 2 SVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNI 61
V IAP G+ +P L+Y YPP IL NI NAL +VP+FY QVLHLMNKMN+
Sbjct: 71 CVKIENGIAPNHGLTFPINSCLKYLYPPPSSTILANIANALASVPKFYVQVLHLMNKMNL 130
Query: 62 PAPF 65
P PF
Sbjct: 131 PPPF 134
>gi|224057266|ref|XP_002187421.1| PREDICTED: RNA-binding protein 40 [Taeniopygia guttata]
Length = 458
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 41/64 (64%)
Query: 2 SVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNI 61
V IAP G+ +P L+Y YPP IL NI NAL +VP+FY QVLHLMNKMN+
Sbjct: 82 CVKIENGIAPNHGLTFPINSCLKYLYPPPSSAILANIANALASVPKFYVQVLHLMNKMNL 141
Query: 62 PAPF 65
P PF
Sbjct: 142 PPPF 145
>gi|327270620|ref|XP_003220087.1| PREDICTED: RNA-binding protein 40-like [Anolis carolinensis]
Length = 515
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 40/57 (70%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NI NAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 136 IAPSHGLTFPLNSCLKYLYPPPSSAILANIANALASVPKFYVQVLHLMNKMNLPPPF 192
>gi|118094273|ref|XP_422302.2| PREDICTED: RNA-binding protein 40 [Gallus gallus]
Length = 550
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 40/57 (70%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NI NAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 179 IAPSHGLTFPINSCLKYLYPPPSSTILANIANALASVPKFYVQVLHLMNKMNLPPPF 235
>gi|326924974|ref|XP_003208697.1| PREDICTED: RNA-binding protein 40-like [Meleagris gallopavo]
Length = 498
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 40/57 (70%)
Query: 9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
IAP G+ +P L+Y YPP IL NI NAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 127 IAPSHGLTFPINSCLKYLYPPPSSTILANIANALASVPKFYVQVLHLMNKMNLPPPF 183
>gi|300175397|emb|CBK20708.2| unnamed protein product [Blastocystis hominis]
Length = 328
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 10/71 (14%)
Query: 15 VDYPFPPHLEYAYPPVDGNILTNIVN----------ALIAVPRFYTQVLHLMNKMNIPAP 64
++Y P LEY+YPP++ I+TNI N A+IAVP+ YTQVLHLMNKMN+P P
Sbjct: 10 INYASSPLLEYSYPPINETIVTNITNGELSEASLCIAIIAVPKLYTQVLHLMNKMNLPPP 69
Query: 65 FRMALPTPPLP 75
F A P +P
Sbjct: 70 FGPARKRPAMP 80
>gi|189235800|ref|XP_001808901.1| PREDICTED: similar to RNA-binding region (RNP1, RRM) containing 3
[Tribolium castaneum]
gi|270004699|gb|EFA01147.1| hypothetical protein TcasGA2_TC010372 [Tribolium castaneum]
Length = 424
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 13 LGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTP 72
+G P PPHL+Y YP + + NI +AL VP+FYTQVLHLMN+MN+P PF ALP P
Sbjct: 115 VGFQQPPPPHLKYVYPKANRLTINNIGHALATVPKFYTQVLHLMNRMNLPPPF--ALPDP 172
>gi|195027067|ref|XP_001986405.1| GH20545 [Drosophila grimshawi]
gi|193902405|gb|EDW01272.1| GH20545 [Drosophila grimshawi]
Length = 403
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 37/46 (80%)
Query: 20 PPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
PP+L+YAYPP++ NIL I +AL + RFYTQVLHLMN+MN+ PF
Sbjct: 128 PPYLQYAYPPINDNILAAIGDALRSDKRFYTQVLHLMNRMNLRPPF 173
>gi|340369585|ref|XP_003383328.1| PREDICTED: RNA-binding protein 40-like [Amphimedon queenslandica]
Length = 434
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 38/55 (69%)
Query: 21 PHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLP 75
P L Y YPP I+ NI +A+ AVP YTQVLHLMNK+N+P+PF LP P LP
Sbjct: 123 PQLSYEYPPPTQTIIGNIAHAVAAVPLLYTQVLHLMNKLNLPSPFDQPLPAPDLP 177
>gi|325181334|emb|CCA15749.1| nucleoside diphosphate kinase B putative [Albugo laibachii Nc14]
Length = 846
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query: 2 SVPAAEPIAPRLGVDYPF-----------PPHLEYAYPPVDGNILTNIVNALIAVPRFYT 50
S+PA P+AP LG P LEY YP ++ NI NAL+A+P FY
Sbjct: 219 SIPA--PLAPHLGYALGLICADKQLHCAPSPLLEYRYPRATEMVVRNIANALMALPDFYR 276
Query: 51 QVLHLMNKMNIPAPF 65
QVLHLMNKMNIP PF
Sbjct: 277 QVLHLMNKMNIPPPF 291
>gi|193683830|ref|XP_001948838.1| PREDICTED: RNA-binding protein 40-like [Acyrthosiphon pisum]
Length = 436
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 12/105 (11%)
Query: 13 LGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTP 72
+ ++ P P HL Y+YP + +IL+NI NAL +FY QVLHLMN+MN+PAPF
Sbjct: 120 IDLNQPPPHHLHYSYPDPNPHILSNIANALACNQKFYYQVLHLMNRMNLPAPFE------ 173
Query: 73 PLPPPVPAASAPQPPPVPRSVPVQPTPPPIADLSSSESEMEFSDE 117
PV S + + + T +L SESEME +DE
Sbjct: 174 ----PVVGCSLNKLMKIETADKYTTTDETDPEL--SESEMESNDE 212
>gi|195122904|ref|XP_002005950.1| GI18815 [Drosophila mojavensis]
gi|193911018|gb|EDW09885.1| GI18815 [Drosophila mojavensis]
Length = 416
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 34/46 (73%)
Query: 20 PPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
PP+L YAYPP++ IL+ I L + RFY QVLHLMN+MN+P PF
Sbjct: 134 PPYLRYAYPPINAEILSAIGETLKSDKRFYVQVLHLMNRMNLPPPF 179
>gi|328772571|gb|EGF82609.1| hypothetical protein BATDEDRAFT_86091 [Batrachochytrium
dendrobatidis JAM81]
Length = 401
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 56/117 (47%)
Query: 4 PAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPA 63
P+ +PI+ LG+ YP P L Y YP IL NI A+ AVP YTQVLHLMNKM++P
Sbjct: 76 PSFDPISMDLGIYYPSNPALLYKYPNPTPEILLNISTAIKAVPALYTQVLHLMNKMHLPP 135
Query: 64 PFRMALPTPPLPPPVPAASAPQPPPVPRSVPVQPTPPPIADLSSSESEMEFSDEVMS 120
P+ LP S + ++ I + S E+ F +E S
Sbjct: 136 PWTCYPSINDLPNKQDICSKTKATSNKNTMSDSSKKRKIQNSSLVENSNAFKEEFES 192
>gi|354505577|ref|XP_003514844.1| PREDICTED: RNA-binding protein 40-like [Cricetulus griseus]
Length = 356
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 31/39 (79%)
Query: 27 YPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
YPP IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 2 YPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 40
>gi|157108640|ref|XP_001650324.1| hypothetical protein AaeL_AAEL005083 [Aedes aegypti]
gi|108879289|gb|EAT43514.1| AAEL005083-PA [Aedes aegypti]
Length = 435
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 36/50 (72%)
Query: 16 DYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
D P PP+L Y YP I+ +I AL +VP+FYTQVLHLMN+MN+P PF
Sbjct: 120 DQPPPPYLRYRYPRATREIIDSICVALESVPKFYTQVLHLMNRMNLPPPF 169
>gi|170035116|ref|XP_001845417.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876969|gb|EDS40352.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 415
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 16 DYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLP 75
+YP PP+L+Y YP +I+ NI L +VP+FY QV+HLMN+MN+P PF P
Sbjct: 113 NYPPPPYLKYRYPKPTRDIIDNICATLESVPKFYVQVMHLMNRMNLPPPFTNKDLEPREG 172
Query: 76 PPVPAASAPQPPPVPRSVPVQPTPPPIADLSSSESEMEFSDE 117
AA + S+ L+ ESE+E +E
Sbjct: 173 TRKDAAQQTDLTMIQESL-----------LAEGESELESDEE 203
>gi|198460375|ref|XP_002138823.1| GA25008 [Drosophila pseudoobscura pseudoobscura]
gi|198136994|gb|EDY69381.1| GA25008 [Drosophila pseudoobscura pseudoobscura]
Length = 386
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 33/47 (70%)
Query: 20 PPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR 66
PP+L Y+YPP++ IL I L A RFY QVLHLMN+MN+ PF+
Sbjct: 129 PPYLRYSYPPLNAEILARIGETLQADTRFYQQVLHLMNRMNLEPPFK 175
>gi|194882084|ref|XP_001975143.1| GG22156 [Drosophila erecta]
gi|190658330|gb|EDV55543.1| GG22156 [Drosophila erecta]
Length = 397
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 20 PPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
PP+L Y+YPP++G IL I +L +FY QVLHLMN+MN+ PF
Sbjct: 129 PPYLSYSYPPINGEILARIGQSLQTNSQFYNQVLHLMNRMNLEPPF 174
>gi|195154278|ref|XP_002018049.1| GL16971 [Drosophila persimilis]
gi|194113845|gb|EDW35888.1| GL16971 [Drosophila persimilis]
Length = 386
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 33/47 (70%)
Query: 20 PPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR 66
PP+L Y+YPP++ IL I L A RFY QVLHLMN+MN+ PF+
Sbjct: 129 PPYLRYSYPPINAEILAMIGETLQADTRFYQQVLHLMNRMNLEPPFK 175
>gi|85857696|gb|ABC86383.1| IP10959p [Drosophila melanogaster]
Length = 407
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 20 PPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
PP+L Y+YPP++G IL I +L FY QVLHLMN+MN+ PF
Sbjct: 130 PPYLSYSYPPINGEILARIGQSLQTNSHFYNQVLHLMNRMNLEPPF 175
>gi|320544222|ref|NP_726148.3| snipper, isoform I [Drosophila melanogaster]
gi|318068664|gb|AAM68198.3| snipper, isoform I [Drosophila melanogaster]
Length = 407
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 20 PPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
PP+L Y+YPP++G IL I +L FY QVLHLMN+MN+ PF
Sbjct: 130 PPYLSYSYPPINGEILARIGQSLQTNSHFYNQVLHLMNRMNLEPPF 175
>gi|345487727|ref|XP_001606002.2| PREDICTED: RNA-binding protein 40-like [Nasonia vitripennis]
Length = 479
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 35/63 (55%)
Query: 3 VPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIP 62
V AP V P PPHL+Y YP L I +I VP YTQVLHLMNKMNIP
Sbjct: 117 VKKWNSWAPYHLVTQPIPPHLKYKYPKPTRETLLRIAIQMIKVPPLYTQVLHLMNKMNIP 176
Query: 63 APF 65
PF
Sbjct: 177 PPF 179
>gi|195486292|ref|XP_002091444.1| GE12236 [Drosophila yakuba]
gi|194177545|gb|EDW91156.1| GE12236 [Drosophila yakuba]
Length = 408
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 20 PPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
PP+L Y+YPP++G IL I L FY QVLHLMN+MN+ PF
Sbjct: 131 PPYLSYSYPPINGEILARIGQHLQTNSHFYNQVLHLMNRMNLEPPF 176
>gi|328872570|gb|EGG20937.1| RNA recognition motif-containing protein [Dictyostelium
fasciculatum]
Length = 454
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 20 PPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALP 70
P H + YPP + I+ NI ++AVP FYT +LHLMN+MN+P PF P
Sbjct: 143 PDH--FLYPPPNQLIIDNINKTMLAVPEFYTNILHLMNRMNLPPPFTHPFP 191
>gi|194756026|ref|XP_001960280.1| GF13283 [Drosophila ananassae]
gi|190621578|gb|EDV37102.1| GF13283 [Drosophila ananassae]
Length = 389
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 35/49 (71%)
Query: 18 PFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR 66
P PP+L Y+YPP++ +I+ I L+ RFY QVLHLMN+MN+ PF+
Sbjct: 123 PPPPYLSYSYPPINADIVAAISQHLLRNKRFYNQVLHLMNRMNLEPPFQ 171
>gi|195431872|ref|XP_002063952.1| GK15943 [Drosophila willistoni]
gi|194160037|gb|EDW74938.1| GK15943 [Drosophila willistoni]
Length = 402
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 18 PFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPP 77
P PP+L Y YP ++ +IL I +L+ +FY QVLHLMN+MN+ PF+ +
Sbjct: 127 PPPPYLRYNYPSINNDILAAISKSLVNNTKFYYQVLHLMNRMNLEPPFKRRQKSLLQTQY 186
Query: 78 VPAASAPQPPPVPRSVPVQPTPPPIADLSSSESEMEFSDE 117
P+ Q +P Q T LS+SESE+E E
Sbjct: 187 RPSVGT-QTEAIPEEETAQKTL-----LSASESELESDTE 220
>gi|256074910|ref|XP_002573765.1| hypothetical protein [Schistosoma mansoni]
gi|353231114|emb|CCD77532.1| hypothetical protein Smp_023270.1 [Schistosoma mansoni]
Length = 413
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 17 YPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
+ + Y YP V ++LTNIV +L + P FY QVLH+MNK+++P PF
Sbjct: 6 FEVSSRMYYEYPVVSIDVLTNIVRSLASCPAFYNQVLHIMNKLHLPPPF 54
>gi|307165867|gb|EFN60222.1| RNA-binding protein 40 [Camponotus floridanus]
Length = 455
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 18 PFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
P PP+++Y Y +IL I L+ P FYTQVLHLMNKMN+P PF
Sbjct: 128 PPPPNIKYKYMAPTKSILIRIAIQLLKEPAFYTQVLHLMNKMNLPPPF 175
>gi|256074908|ref|XP_002573764.1| hypothetical protein [Schistosoma mansoni]
gi|353231113|emb|CCD77531.1| hypothetical protein Smp_023270.2 [Schistosoma mansoni]
Length = 525
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 25 YAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
Y YP V ++LTNIV +L + P FY QVLH+MNK+++P PF
Sbjct: 126 YEYPVVSIDVLTNIVRSLASCPAFYNQVLHIMNKLHLPPPF 166
>gi|158287033|ref|XP_560309.3| AGAP005296-PA [Anopheles gambiae str. PEST]
gi|157019820|gb|EAL41703.3| AGAP005296-PA [Anopheles gambiae str. PEST]
Length = 407
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 20 PPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPPVP 79
PPHL Y YP +L NI L FY Q LHLMNKMN+ PF T P
Sbjct: 118 PPHLAYRYPKCSPEVLQNIARELAGNTAFYYQTLHLMNKMNLQPPFERRQDT---IATTP 174
Query: 80 AASAPQ 85
AA Q
Sbjct: 175 AAEEQQ 180
>gi|328779176|ref|XP_623250.3| PREDICTED: RNA-binding protein 40-like [Apis mellifera]
Length = 430
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 18 PFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
P PP+++Y Y L I L+ P FYTQVLHLMN+MN+P PF
Sbjct: 94 PPPPNIQYKYSAPTKGTLIRISIQLLKEPAFYTQVLHLMNRMNLPPPF 141
>gi|350412501|ref|XP_003489669.1| PREDICTED: RNA-binding protein 40-like [Bombus impatiens]
Length = 468
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 18 PFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
P PP+++Y Y L I L+ P FYTQVLHLMN+MN+P PF
Sbjct: 134 PPPPNIQYKYSAPTKGTLIRIAIQLLKEPVFYTQVLHLMNRMNLPPPF 181
>gi|340725133|ref|XP_003400928.1| PREDICTED: RNA-binding protein 40-like [Bombus terrestris]
Length = 468
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 18 PFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
P PP+++Y Y L I L+ P FYTQVLHLMN+MN+P PF
Sbjct: 134 PPPPNIQYKYSAPTKGTLIRIAIQLLKEPVFYTQVLHLMNRMNLPPPF 181
>gi|297743790|emb|CBI36673.3| unnamed protein product [Vitis vinifera]
Length = 190
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 24/27 (88%)
Query: 2 SVPAAEPIAPRLGVDYPFPPHLEYAYP 28
S+PA+EPIA RLG+DYPFPPHLEY P
Sbjct: 136 SLPASEPIAARLGIDYPFPPHLEYVKP 162
>gi|380027506|ref|XP_003697464.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 40-like [Apis
florea]
Length = 461
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 29/48 (60%)
Query: 18 PFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
P PP++ Y Y L I L+ P FYTQVLHLMN+MN+P PF
Sbjct: 134 PPPPNIHYKYSAPTKGTLIRISIQLLKEPAFYTQVLHLMNRMNLPPPF 181
>gi|426398159|ref|XP_004065264.1| PREDICTED: RNA-binding protein 40-like, partial [Gorilla gorilla
gorilla]
Length = 65
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%)
Query: 1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQ 51
G + IAP G+ +P L+Y YPP IL NIVNAL +VP+FY Q
Sbjct: 15 GYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQ 65
>gi|307210931|gb|EFN87246.1| Tetratricopeptide repeat protein 26 [Harpegnathos saltator]
Length = 1038
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 26/43 (60%)
Query: 18 PFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
P PP++ Y Y N L I L+ P FYTQVLHLMNKMN
Sbjct: 140 PPPPNIRYKYIAPTRNTLMRIAIQLLKEPTFYTQVLHLMNKMN 182
>gi|383852802|ref|XP_003701914.1| PREDICTED: RNA-binding protein 40-like [Megachile rotundata]
Length = 427
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 20 PPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
PP+++Y Y + L I L+ P FYTQVLHLMN+MN+P PF
Sbjct: 96 PPNIQYKYSAPTRSTLIRIAIQLLKEPAFYTQVLHLMNRMNLPPPF 141
>gi|357625057|gb|EHJ75610.1| putative RNA-binding protein 40 [Danaus plexippus]
Length = 429
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 14 GVDYPFPP--HLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
VD+ PP HL+Y YP + + NI+ +L+ FY Q LHLMNKM++ PF
Sbjct: 108 SVDFYQPPPIHLKYKYPTANSVVCINILYSLLLHKPFYIQTLHLMNKMSLEPPF 161
>gi|332020742|gb|EGI61146.1| RNA-binding protein 40 [Acromyrmex echinatior]
Length = 450
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 15 VDYPF----PPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
++Y F PP++ Y Y + + I L+ P FYTQVLHLMNKMN+P PF
Sbjct: 118 MNYEFSQPPPPNIRYKYMTPTKSTVARIAIQLLTQPAFYTQVLHLMNKMNLPPPF 172
>gi|312378992|gb|EFR25411.1| hypothetical protein AND_09271 [Anopheles darlingi]
Length = 469
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 19 FPP-HLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
FPP + Y YP + L NI L + FY QVLHLMNKMN+ PF
Sbjct: 119 FPPTSILYQYPKISPATLDNISRELASNGAFYYQVLHLMNKMNLKPPF 166
>gi|339239559|ref|XP_003381334.1| transcription factor E2F5 [Trichinella spiralis]
gi|316975642|gb|EFV59050.1| transcription factor E2F5 [Trichinella spiralis]
Length = 879
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 1 GSVPAAEPIA-------PRLGVDYPFP--PHLEYAYPPVDGNILTNIVNALIAVPRFYTQ 51
GS A+E + R V+ P L Y YP + L I L P FYTQ
Sbjct: 556 GSSCASEELRGSLEQQLARCMVEQKCPTVSQLAYRYPRPNRLALRRISWCLEKYPEFYTQ 615
Query: 52 VLHLMNKMNIPAPF 65
VLHLMNK+ +P PF
Sbjct: 616 VLHLMNKLCLPCPF 629
>gi|344265080|ref|XP_003404615.1| PREDICTED: protein diaphanous homolog 1 [Loxodonta africana]
Length = 1275
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 59 MNIPAPFRMALPTPPLPPPVP-AASAPQPPPVPRSVPVQPTPP 100
+++P+P + T P PPP+P +AS P PP +P S V TPP
Sbjct: 619 ISLPSPLPGS-ATSPHPPPLPGSASVPPPPLLPGSASVPSTPP 660
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,379,055,649
Number of Sequences: 23463169
Number of extensions: 115860657
Number of successful extensions: 2998523
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 11714
Number of HSP's successfully gapped in prelim test: 16602
Number of HSP's that attempted gapping in prelim test: 2243917
Number of HSP's gapped (non-prelim): 468224
length of query: 121
length of database: 8,064,228,071
effective HSP length: 88
effective length of query: 33
effective length of database: 5,999,469,199
effective search space: 197982483567
effective search space used: 197982483567
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)