BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036790
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FRK|A Chain A, X-Ray Structure Of Qdtb From T. Thermosaccharolyticum In
Complex With A Plp:tdp-3-Aminoquinovose Aldimine
pdb|3FRK|B Chain B, X-Ray Structure Of Qdtb From T. Thermosaccharolyticum In
Complex With A Plp:tdp-3-Aminoquinovose Aldimine
Length = 373
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Query: 15 VDYPFPPHLEYAYPPV---DGN--ILTNIVNALIAVPRFY----TQVLHLMNKMN 60
+ YP P HL+ AY + GN I I N ++++P +Y ++ ++++K+N
Sbjct: 308 IHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKIN 362
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 18 PFPPHLEYAYPPVD---GNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR 66
PF P A+ PVD G + +++ L + RF+T+ LH + + + PF+
Sbjct: 520 PFDPEKANAWMPVDQYIGGVEHAVLHLLYS--RFFTKFLHDLGMVKVEEPFQ 569
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 18 PFPPHLEYAYPPVD---GNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR 66
PF P A+ PVD G + +++ L + RF+T+ LH + + + PF+
Sbjct: 520 PFDPEKANAWMPVDQYIGGVEHAVLHLLYS--RFFTKFLHDLGMVKVEEPFQ 569
>pdb|1W3O|A Chain A, Crystal Structure Of Nima From D. Radiodurans
pdb|1W3P|A Chain A, Nima From D. Radiodurans With A His71-Pyruvate Residue
pdb|1W3Q|A Chain A, Nima From D. Radiodurans With Covalenly Bound Lactate
pdb|1W3R|A Chain A, Nima From D. Radiodurans With Metronidazole And Pyruvate
pdb|2VPA|A Chain A, High Resolution Crystal Structure Of The Antibiotic
Resistance Protein Nima From Deinococcus Radiodurans
Length = 216
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 14 GVDYPFPPHLEYAYPPVDGNIL--TNIVNALIA 44
G +PF L YAY P G+++ TN+V L A
Sbjct: 69 GAAFPFITPLAYAYRPEQGDLVYHTNVVGRLRA 101
>pdb|2X1K|A Chain A, H71s Mutant Of The Antibiotic Resistance Protein Nima From
Deinococcus Radiodurans
Length = 216
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 14 GVDYPFPPHLEYAYPPVDGNIL--TNIVNALIA 44
G +PF L YAY P G+++ TN+V L A
Sbjct: 69 GAAFPFITPLAYAYRPEQGDLVYSTNVVGRLRA 101
>pdb|2X1J|A Chain A, H71a Mutant Of The Antibiotic Resistance Protein Nima From
Deinococcus Radiodurans
Length = 216
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 14 GVDYPFPPHLEYAYPPVDGNIL--TNIVNALIA 44
G +PF L YAY P G+++ TN+V L A
Sbjct: 69 GAAFPFITPLAYAYRPEQGDLVYATNVVGRLRA 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.144 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,238,795
Number of Sequences: 62578
Number of extensions: 70937
Number of successful extensions: 125
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 6
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)