BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036790
         (121 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q96LT9|RBM40_HUMAN RNA-binding protein 40 OS=Homo sapiens GN=RNPC3 PE=1 SV=1
          Length = 517

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 43/65 (66%)

Query: 1   GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
           G +     IAP  G+ +P    L+Y YPP    IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 135 GYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194

Query: 61  IPAPF 65
           +P PF
Sbjct: 195 LPTPF 199


>sp|Q5R6C7|RBM40_PONAB RNA-binding protein 40 OS=Pongo abelii GN=RNPC3 PE=2 SV=1
          Length = 517

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 43/65 (66%)

Query: 1   GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
           G +     IAP  G+ +P    L+Y YPP    IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 135 GYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194

Query: 61  IPAPF 65
           +P PF
Sbjct: 195 LPTPF 199


>sp|Q3MHP0|RBM40_BOVIN RNA-binding protein 40 OS=Bos taurus GN=RNPC3 PE=2 SV=1
          Length = 516

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 41/57 (71%)

Query: 9   IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
           IAP  G+ +P    L+Y YPP    IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199


>sp|Q4G055|RBM40_RAT RNA-binding protein 40 OS=Rattus norvegicus GN=Rnpc3 PE=2 SV=2
          Length = 515

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 41/57 (71%)

Query: 9   IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
           IAP  G+ +P    L+Y YPP    IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199


>sp|Q3UZ01|RBM40_MOUSE RNA-binding protein 40 OS=Mus musculus GN=Rnpc3 PE=2 SV=2
          Length = 514

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 41/57 (71%)

Query: 9   IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
           IAP  G+ +P    L+Y YPP    IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199


>sp|Q9VUC6|Y2138_DROME Formin-like protein CG32138 OS=Drosophila melanogaster GN=CG32138
           PE=1 SV=3
          Length = 1183

 Score = 32.3 bits (72), Expect = 0.87,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 70  PTPPLPPPVPAASAPQPPPVPRSVP 94
           P+PP  PP+ ++  P PPPV   +P
Sbjct: 655 PSPPHAPPMLSSFQPPPPPVAGFMP 679


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.137    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,390,626
Number of Sequences: 539616
Number of extensions: 2581780
Number of successful extensions: 71007
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 1224
Number of HSP's that attempted gapping in prelim test: 30522
Number of HSP's gapped (non-prelim): 23574
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)