Query 036790
Match_columns 121
No_of_seqs 69 out of 71
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 05:31:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4206 Spliceosomal protein s 85.8 0.2 4.3E-06 41.2 -0.5 43 17-65 96-138 (221)
2 PRK10963 hypothetical protein; 47.8 23 0.00049 28.0 3.2 31 36-66 6-36 (223)
3 PF13276 HTH_21: HTH-like doma 40.5 58 0.0013 20.1 3.7 29 37-65 25-56 (60)
4 COG4445 MiaE Hydroxylase for s 38.4 30 0.00064 28.4 2.6 36 26-62 53-88 (203)
5 PF12921 ATP13: Mitochondrial 35.6 1E+02 0.0022 22.5 4.8 36 29-64 49-87 (126)
6 KOG1924 RhoA GTPase effector D 35.1 90 0.0019 31.1 5.6 12 57-68 510-521 (1102)
7 COG4608 AppF ABC-type oligopep 35.0 25 0.00053 29.7 1.7 24 36-59 118-155 (268)
8 PF04340 DUF484: Protein of un 34.7 13 0.00028 28.9 0.0 29 36-64 9-37 (225)
9 PF07508 Recombinase: Recombin 34.2 91 0.002 20.4 4.0 36 32-68 4-39 (102)
10 cd07910 MiaE MiaE tRNA-modifyi 33.8 40 0.00086 27.1 2.6 20 48-69 64-83 (180)
11 PF05009 EBV-NA3: Epstein-Barr 33.6 14 0.0003 31.3 0.0 11 107-117 222-232 (255)
12 PF07708 Tash_PEST: Tash prote 31.6 22 0.00047 19.5 0.5 9 110-118 10-18 (19)
13 KOG3555 Ca2+-binding proteogly 31.4 25 0.00054 31.7 1.2 17 103-119 404-420 (434)
14 COG5406 Nucleosome binding fac 28.7 28 0.00061 33.9 1.1 16 104-119 964-979 (1001)
15 cd02651 nuc_hydro_IU_UC_XIUA n 27.7 43 0.00094 27.1 1.9 18 35-52 124-141 (302)
16 PHA02543 regA translation repr 25.4 49 0.0011 25.5 1.7 28 32-60 19-46 (125)
17 cd02654 nuc_hydro_CjNH nuc_hyd 24.0 54 0.0012 27.1 1.8 18 35-52 139-156 (318)
18 COG5644 Uncharacterized conser 22.9 41 0.0009 32.3 1.1 14 105-118 168-181 (869)
19 smart00313 PXA Domain associat 22.7 1.2E+02 0.0026 22.8 3.4 18 41-58 156-174 (176)
20 PF07802 GCK: GCK domain; Int 22.7 1.5E+02 0.0032 20.7 3.6 27 33-59 42-68 (76)
21 PRK10768 ribonucleoside hydrol 22.3 60 0.0013 26.5 1.8 18 35-52 126-143 (304)
22 PF04931 DNA_pol_phi: DNA poly 22.0 50 0.0011 30.6 1.4 16 32-47 587-602 (784)
23 PF12056 DUF3537: Protein of u 21.9 62 0.0013 29.0 1.9 16 105-120 332-347 (398)
24 cd02653 nuc_hydro_3 NH_3: A su 21.7 64 0.0014 26.8 1.9 18 35-52 123-140 (320)
25 KOG0819 Annexin [Intracellular 21.7 96 0.0021 27.0 3.0 29 32-60 235-264 (321)
26 cd02649 nuc_hydro_CeIAG nuc_hy 21.3 71 0.0015 26.4 2.1 19 35-53 127-145 (306)
27 PRK10443 rihA ribonucleoside h 21.0 75 0.0016 26.2 2.1 18 35-52 127-144 (311)
28 PF01832 Glucosaminidase: Mann 20.7 60 0.0013 22.7 1.3 19 43-61 118-136 (136)
29 COG3159 Uncharacterized protei 20.7 1.2E+02 0.0026 25.2 3.2 28 37-64 8-35 (218)
30 KOG2925 Predicted translation 20.6 63 0.0014 25.9 1.6 20 48-67 90-109 (167)
31 PF13812 PPR_3: Pentatricopept 20.3 91 0.002 16.1 1.7 14 50-63 21-34 (34)
No 1
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=85.76 E-value=0.2 Score=41.23 Aligned_cols=43 Identities=33% Similarity=0.529 Sum_probs=38.7
Q ss_pred cCCCCCccccCCCCCHHHHHHHHHHHHhCChhHHHHHHHHHhcCCCCCC
Q 036790 17 YPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65 (121)
Q Consensus 17 ~p~pp~L~Y~YPpp~~~il~nI~~~L~~~p~FY~QVLHLMNkmnLppPF 65 (121)
.+.. .+.|+|++-+.+++.+|..-+..+..||. ||+||+|+||
T Consensus 96 ~~~~-~~v~~~~k~~~~~~~~~~~~~~~ng~~~~-----~~~~~~p~p~ 138 (221)
T KOG4206|consen 96 QAPG-TFVEKEKKINGEILARIKQPLDTNGHFYN-----MNRMNLPPPF 138 (221)
T ss_pred ccCc-eeccccCccccccccccCCcccccccccc-----cccccCCCCc
Confidence 3344 78889999999999999999999999999 9999999999
No 2
>PRK10963 hypothetical protein; Provisional
Probab=47.75 E-value=23 Score=27.96 Aligned_cols=31 Identities=29% Similarity=0.675 Sum_probs=27.6
Q ss_pred HHHHHHHHhCChhHHHHHHHHHhcCCCCCCC
Q 036790 36 TNIVNALIAVPRFYTQVLHLMNKMNIPAPFR 66 (121)
Q Consensus 36 ~nI~~~L~~~p~FY~QVLHLMNkmnLppPF~ 66 (121)
..|+.-|..||+|+.+=-.||.+|.+|-|-+
T Consensus 6 ~~V~~yL~~~PdFf~~h~~Ll~~L~lph~~~ 36 (223)
T PRK10963 6 RAVVDYLLQNPDFFIRNARLVEQMRVPHPVR 36 (223)
T ss_pred HHHHHHHHHCchHHhhCHHHHHhccCCCCCC
Confidence 4688999999999999999999999997743
No 3
>PF13276 HTH_21: HTH-like domain
Probab=40.53 E-value=58 Score=20.10 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=19.6
Q ss_pred HHHHHHHhCChh---HHHHHHHHHhcCCCCCC
Q 036790 37 NIVNALIAVPRF---YTQVLHLMNKMNIPAPF 65 (121)
Q Consensus 37 nI~~~L~~~p~F---Y~QVLHLMNkmnLppPF 65 (121)
.|...|...-.| -..|..||++|||-+..
T Consensus 25 ri~~~L~~~~~~~v~~krV~RlM~~~gL~~~~ 56 (60)
T PF13276_consen 25 RIWAELRREGGIRVSRKRVRRLMREMGLRSKR 56 (60)
T ss_pred HHHHHHhccCcccccHHHHHHHHHHcCCcccC
Confidence 344555554333 46789999999997764
No 4
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=38.44 E-value=30 Score=28.41 Aligned_cols=36 Identities=25% Similarity=0.497 Sum_probs=21.4
Q ss_pred cCCCCCHHHHHHHHHHHHhCChhHHHHHHHHHhcCCC
Q 036790 26 AYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIP 62 (121)
Q Consensus 26 ~YPpp~~~il~nI~~~L~~~p~FY~QVLHLMNkmnLp 62 (121)
+|+. +...+...+.-..-.=.-|.||+.+|.+.|+|
T Consensus 53 kY~~-~~~lv~km~~larEEL~HFeqV~eilq~RnI~ 88 (203)
T COG4445 53 KYPS-NTDLVDKMVLLAREELHHFEQVLEILQARNIP 88 (203)
T ss_pred Hccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3443 34444443322222334578999999999996
No 5
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=35.64 E-value=1e+02 Score=22.46 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHhCChhHHHH---HHHHHhcCCCCC
Q 036790 29 PVDGNILTNIVNALIAVPRFYTQV---LHLMNKMNIPAP 64 (121)
Q Consensus 29 pp~~~il~nI~~~L~~~p~FY~QV---LHLMNkmnLppP 64 (121)
-||..+|..|++++..+-.|..=+ =|.+++-+++-|
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~ 87 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIP 87 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCC
Confidence 389999999999999999988654 456666665544
No 6
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=35.14 E-value=90 Score=31.12 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=9.0
Q ss_pred HhcCCCCCCCCC
Q 036790 57 NKMNIPAPFRMA 68 (121)
Q Consensus 57 NkmnLppPF~~~ 68 (121)
+||+|..|++..
T Consensus 510 e~~al~s~~~~~ 521 (1102)
T KOG1924|consen 510 EKQALSSPSQLL 521 (1102)
T ss_pred hhhhccCcccCC
Confidence 677888888755
No 7
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=34.97 E-value=25 Score=29.65 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=20.3
Q ss_pred HHHHHHHHhCChhH--------------HHHHHHHHhc
Q 036790 36 TNIVNALIAVPRFY--------------TQVLHLMNKM 59 (121)
Q Consensus 36 ~nI~~~L~~~p~FY--------------~QVLHLMNkm 59 (121)
-.||+||+-+|+|. .|||+||.++
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dl 155 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDL 155 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHH
Confidence 36899999999997 5999999765
No 8
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=34.69 E-value=13 Score=28.88 Aligned_cols=29 Identities=21% Similarity=0.542 Sum_probs=0.0
Q ss_pred HHHHHHHHhCChhHHHHHHHHHhcCCCCC
Q 036790 36 TNIVNALIAVPRFYTQVLHLMNKMNIPAP 64 (121)
Q Consensus 36 ~nI~~~L~~~p~FY~QVLHLMNkmnLppP 64 (121)
..|+.-|..||+|+.+=-.||..|.+|-|
T Consensus 9 ~~V~~yL~~~PdFf~~~~~ll~~l~~ph~ 37 (225)
T PF04340_consen 9 EDVAAYLRQHPDFFERHPELLAELRLPHP 37 (225)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHhCcHHHHhCHHHHHHcCCCCC
Confidence 46888999999999999999999999876
No 9
>PF07508 Recombinase: Recombinase; InterPro: IPR011109 This domain is usually found associated with IPR006119 from INTERPRO in putative integrases/recombinases of mobile genetic elements of diverse bacteria and phages.
Probab=34.24 E-value=91 Score=20.37 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHhcCCCCCCCCC
Q 036790 32 GNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMA 68 (121)
Q Consensus 32 ~~il~nI~~~L~~~p~FY~QVLHLMNkmnLppPF~~~ 68 (121)
..|+..|...++ .-.=++||.+.+|..+++.|-+..
T Consensus 4 a~vVr~if~~~~-~g~s~~~I~~~ln~~gi~~~~~~~ 39 (102)
T PF07508_consen 4 AEVVREIFELYL-EGYSLRQIARELNEKGIPTPRGKK 39 (102)
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHhcCCccccCCc
Confidence 568888888877 888899999999999998775433
No 10
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=33.81 E-value=40 Score=27.09 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhcCCCCCCCCCC
Q 036790 48 FYTQVLHLMNKMNIPAPFRMAL 69 (121)
Q Consensus 48 FY~QVLHLMNkmnLppPF~~~~ 69 (121)
-|.||+.+|.|.|+ +++...
T Consensus 64 HFeqV~~im~~Rgi--~l~~~~ 83 (180)
T cd07910 64 HFEQVLKIMKKRGI--PLGPDS 83 (180)
T ss_pred HHHHHHHHHHHcCC--CCCCCC
Confidence 47899999999999 344443
No 11
>PF05009 EBV-NA3: Epstein-Barr virus nuclear antigen 3 (EBNA-3); InterPro: IPR007706 This family contains EBNA-3A, -3B, and -3C which are latent infection nuclear proteins important for Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4)-induced B-cell immortalisation and the immune response to EBVG infection. ; GO: 0016032 viral reproduction, 0042025 host cell nucleus; PDB: 3SJV_H 3DXA_M.
Probab=33.56 E-value=14 Score=31.30 Aligned_cols=11 Identities=55% Similarity=0.580 Sum_probs=0.0
Q ss_pred CcccccccCcc
Q 036790 107 SSESEMEFSDE 117 (121)
Q Consensus 107 s~ESElESddE 117 (121)
||+||+|||||
T Consensus 222 ~eD~e~e~dde 232 (255)
T PF05009_consen 222 SEDSESESDDE 232 (255)
T ss_dssp -----------
T ss_pred chhhccccCcc
Confidence 35677777776
No 12
>PF07708 Tash_PEST: Tash protein PEST motif; InterPro: IPR011695 The PEST motif is found in one or more copies in Tash AT-hook proteins from Theileria annulata. Tash proteins are transported to the host nucleus and are thought to be involved in pathogenesis []. The PEST motif is often found in conjunction with the (IPR007480 from INTERPRO), whose function is unknown. These repeats may be part of the PEST motif (a signal for rapid proteolytic degradation) [], though this is not proven. This motif is also found in other T. annulata proteins, which have no other known domains.
Probab=31.57 E-value=22 Score=19.45 Aligned_cols=9 Identities=22% Similarity=0.239 Sum_probs=4.7
Q ss_pred cccccCccc
Q 036790 110 SEMEFSDEV 118 (121)
Q Consensus 110 SElESddEe 118 (121)
-|++||+|+
T Consensus 10 vEi~SDeee 18 (19)
T PF07708_consen 10 VEIGSDEEE 18 (19)
T ss_pred EEecccccC
Confidence 355565544
No 13
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=31.39 E-value=25 Score=31.67 Aligned_cols=17 Identities=41% Similarity=0.350 Sum_probs=12.1
Q ss_pred cCCCCcccccccCcccc
Q 036790 103 ADLSSSESEMEFSDEVM 119 (121)
Q Consensus 103 ~e~Ss~ESElESddEe~ 119 (121)
.+.|-+|||++||||+|
T Consensus 404 ~e~~~~e~el~~ddedd 420 (434)
T KOG3555|consen 404 EETSHSESELTSDDEDD 420 (434)
T ss_pred ccccccccccccccccc
Confidence 34577889998877554
No 14
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=28.68 E-value=28 Score=33.88 Aligned_cols=16 Identities=56% Similarity=0.507 Sum_probs=11.2
Q ss_pred CCCCcccccccCcccc
Q 036790 104 DLSSSESEMEFSDEVM 119 (121)
Q Consensus 104 e~Ss~ESElESddEe~ 119 (121)
+.|++|||-+|+|||+
T Consensus 964 D~sedeSe~~~~DeE~ 979 (1001)
T COG5406 964 DLSEDESENDSSDEED 979 (1001)
T ss_pred cccccccccccccccc
Confidence 3467778888777765
No 15
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine a
Probab=27.68 E-value=43 Score=27.07 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCChhHHHH
Q 036790 35 LTNIVNALIAVPRFYTQV 52 (121)
Q Consensus 35 l~nI~~~L~~~p~FY~QV 52 (121)
|+|||.+|...|+|-.+|
T Consensus 124 LTNlA~al~~~P~~~~~i 141 (302)
T cd02651 124 LTNIALLLRKYPELAERI 141 (302)
T ss_pred hHHHHHHHHHChhhHhhc
Confidence 789999999999998888
No 16
>PHA02543 regA translation repressor protein; Provisional
Probab=25.35 E-value=49 Score=25.48 Aligned_cols=28 Identities=25% Similarity=0.188 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHhcC
Q 036790 32 GNILTNIVNALIAVPRFYTQVLHLMNKMN 60 (121)
Q Consensus 32 ~~il~nI~~~L~~~p~FY~QVLHLMNkmn 60 (121)
+++|++|+.|=....+. .|++|+..|-|
T Consensus 19 rETLtRiGian~k~k~L-yQsCHILqKqG 46 (125)
T PHA02543 19 RETLTRIGIANNKEKKL-YQSCHILQKQG 46 (125)
T ss_pred HHHHHHHcccccccchh-hhhhhhHhhCC
Confidence 58899999887777444 59999998865
No 17
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolases similar to Campylobacter jejuni nucleoside hydrolase. This group contains eukaryotic and bacterial proteins similar to C. jejuni nucleoside hydrolase. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. C. jejuni nucleoside hydrolase is inactive against natural nucleosides or against common nucleoside analogues.
Probab=23.97 E-value=54 Score=27.12 Aligned_cols=18 Identities=39% Similarity=0.394 Sum_probs=16.8
Q ss_pred HHHHHHHHHhCChhHHHH
Q 036790 35 LTNIVNALIAVPRFYTQV 52 (121)
Q Consensus 35 l~nI~~~L~~~p~FY~QV 52 (121)
|+|||.+|...|+|-.+|
T Consensus 139 LTNlA~al~~~P~~~~~i 156 (318)
T cd02654 139 LTNLALALRIDPDFAPLA 156 (318)
T ss_pred HHHHHHHHHHChhHHHhC
Confidence 799999999999998887
No 18
>COG5644 Uncharacterized conserved protein [Function unknown]
Probab=22.87 E-value=41 Score=32.35 Aligned_cols=14 Identities=57% Similarity=0.453 Sum_probs=7.7
Q ss_pred CCCcccccccCccc
Q 036790 105 LSSSESEMEFSDEV 118 (121)
Q Consensus 105 ~Ss~ESElESddEe 118 (121)
+|++|||.||+|++
T Consensus 168 esdsese~e~~d~d 181 (869)
T COG5644 168 ESDSESEIESSDSD 181 (869)
T ss_pred cccccccccccccC
Confidence 45556666665543
No 19
>smart00313 PXA Domain associated with PX domains. unpubl. observations
Probab=22.71 E-value=1.2e+02 Score=22.79 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=13.4
Q ss_pred HHHhCChhHHHH-HHHHHh
Q 036790 41 ALIAVPRFYTQV-LHLMNK 58 (121)
Q Consensus 41 ~L~~~p~FY~QV-LHLMNk 58 (121)
..++.|+|++|. +++..+
T Consensus 156 ~~lsdPd~iN~~Ii~l~~~ 174 (176)
T smart00313 156 THLSDPDTINLCIILLFSS 174 (176)
T ss_pred HHccCchHHHHHHHHHhhc
Confidence 458899999987 565554
No 20
>PF07802 GCK: GCK domain; InterPro: IPR012891 This domain is found in proteins carrying other domains known to be involved in intracellular signalling pathways (such as IPR001806 from INTERPRO) indicating that it might also be involved in these pathways. It has 4 highly conserved cysteine residues, suggesting that it can bind zinc ions. Moreover, it is found repeated in some members of this family (such as Q9LMF3 from SWISSPROT); this may indicate that these domains are able to interact with one another, raising the possibility that this domain mediates heterodimerisation.
Probab=22.67 E-value=1.5e+02 Score=20.71 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036790 33 NILTNIVNALIAVPRFYTQVLHLMNKM 59 (121)
Q Consensus 33 ~il~nI~~~L~~~p~FY~QVLHLMNkm 59 (121)
++.+..-..+.+|+++|.-+|-..+.+
T Consensus 42 e~~~~L~kCM~ahsdYY~P~La~~k~~ 68 (76)
T PF07802_consen 42 EATAALRKCMEAHSDYYEPILAAEKAA 68 (76)
T ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 345566778899999999999887764
No 21
>PRK10768 ribonucleoside hydrolase RihC; Provisional
Probab=22.33 E-value=60 Score=26.54 Aligned_cols=18 Identities=33% Similarity=0.360 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCChhHHHH
Q 036790 35 LTNIVNALIAVPRFYTQV 52 (121)
Q Consensus 35 l~nI~~~L~~~p~FY~QV 52 (121)
|+|||.+|...|.|-.+|
T Consensus 126 LTNlA~al~~~P~i~~~i 143 (304)
T PRK10768 126 LTNIALLLSTYPEVKPYI 143 (304)
T ss_pred HHHHHHHHHHChhhHhhc
Confidence 689999999999998887
No 22
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=22.02 E-value=50 Score=30.61 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhCCh
Q 036790 32 GNILTNIVNALIAVPR 47 (121)
Q Consensus 32 ~~il~nI~~~L~~~p~ 47 (121)
.++|.-|--.|++.|.
T Consensus 587 ~~vlveiLLslls~~s 602 (784)
T PF04931_consen 587 SEVLVEILLSLLSQPS 602 (784)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 5788888888888875
No 23
>PF12056 DUF3537: Protein of unknown function (DUF3537); InterPro: IPR021924 This family of transmembrane proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 427 to 453 amino acids in length.
Probab=21.85 E-value=62 Score=29.00 Aligned_cols=16 Identities=38% Similarity=0.320 Sum_probs=11.2
Q ss_pred CCCcccccccCccccC
Q 036790 105 LSSSESEMEFSDEVMS 120 (121)
Q Consensus 105 ~Ss~ESElESddEe~~ 120 (121)
.+.++|++||+||+|+
T Consensus 332 ~~~~~sd~es~d~~~~ 347 (398)
T PF12056_consen 332 INSSSSDDESGDEEDD 347 (398)
T ss_pred CCCCccchhhcccCCC
Confidence 4567788888776665
No 24
>cd02653 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=21.68 E-value=64 Score=26.75 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCChhHHHH
Q 036790 35 LTNIVNALIAVPRFYTQV 52 (121)
Q Consensus 35 l~nI~~~L~~~p~FY~QV 52 (121)
|+|||.+|...|+|..+|
T Consensus 123 LTNlA~al~~~P~~~~~i 140 (320)
T cd02653 123 LTNLALALREEPELPRLL 140 (320)
T ss_pred hHHHHHHHHHChHHHHhc
Confidence 789999999999999887
No 25
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.66 E-value=96 Score=27.04 Aligned_cols=29 Identities=21% Similarity=0.454 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHH-HHhcC
Q 036790 32 GNILTNIVNALIAVPRFYTQVLHL-MNKMN 60 (121)
Q Consensus 32 ~~il~nI~~~L~~~p~FY~QVLHL-MNkmn 60 (121)
...|..|+.++..-|+||-.+||. ||.|+
T Consensus 235 ~~~llaiv~c~~n~~~yFA~~L~~amkg~G 264 (321)
T KOG0819|consen 235 EKLLLAIVKCIRNPPAYFAERLRKAMKGLG 264 (321)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHhccC
Confidence 357889999999999999999995 88877
No 26
>cd02649 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR).
Probab=21.35 E-value=71 Score=26.38 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCChhHHHHH
Q 036790 35 LTNIVNALIAVPRFYTQVL 53 (121)
Q Consensus 35 l~nI~~~L~~~p~FY~QVL 53 (121)
|+|||.+|...|+|-.+|=
T Consensus 127 LTNlA~al~~~p~~~~~i~ 145 (306)
T cd02649 127 LTNLALAYRLDPSLPQKIK 145 (306)
T ss_pred HHHHHHHHHHChHHHHhcC
Confidence 7999999999999988873
No 27
>PRK10443 rihA ribonucleoside hydrolase 1; Provisional
Probab=20.95 E-value=75 Score=26.19 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCChhHHHH
Q 036790 35 LTNIVNALIAVPRFYTQV 52 (121)
Q Consensus 35 l~nI~~~L~~~p~FY~QV 52 (121)
|+|||.+|...|.|-.+|
T Consensus 127 LTNlA~al~~~P~~~~~i 144 (311)
T PRK10443 127 QTNVALLLASHPELHSKI 144 (311)
T ss_pred hHHHHHHHHHCchhhhhh
Confidence 689999999999998887
No 28
>PF01832 Glucosaminidase: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; InterPro: IPR002901 This domain is found in many different proteins including mannosyl-glycoprotein endo-beta-N-acetylglucosamidase (3.2.1.96 from EC).It is also found in flagellar protein J (P75942 from SWISSPROT), which has been shown to hydrolyse peptidoglycan [].; GO: 0004040 amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3FI7_A 2ZYC_A 3K3T_A.
Probab=20.67 E-value=60 Score=22.67 Aligned_cols=19 Identities=11% Similarity=0.389 Sum_probs=15.9
Q ss_pred HhCChhHHHHHHHHHhcCC
Q 036790 43 IAVPRFYTQVLHLMNKMNI 61 (121)
Q Consensus 43 ~~~p~FY~QVLHLMNkmnL 61 (121)
++.+.+...|..+|+++||
T Consensus 118 atd~~Y~~kl~~i~~~~~l 136 (136)
T PF01832_consen 118 ATDPNYAEKLASIIKSYNL 136 (136)
T ss_dssp SS-TTHHHHHHHHHHCCTG
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 4568888999999999997
No 29
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.66 E-value=1.2e+02 Score=25.21 Aligned_cols=28 Identities=25% Similarity=0.636 Sum_probs=25.5
Q ss_pred HHHHHHHhCChhHHHHHHHHHhcCCCCC
Q 036790 37 NIVNALIAVPRFYTQVLHLMNKMNIPAP 64 (121)
Q Consensus 37 nI~~~L~~~p~FY~QVLHLMNkmnLppP 64 (121)
.++.-|..+|+|+.|==||.-.|+||-+
T Consensus 8 ~VadyL~~hPeFf~~h~~Ll~~L~lph~ 35 (218)
T COG3159 8 DVADYLRQHPEFFIQHAELLEELRLPHP 35 (218)
T ss_pred HHHHHHHhCcHHHHhCHHHHHHcCCCCC
Confidence 4778899999999999999999999965
No 30
>KOG2925 consensus Predicted translation initiation factor related to eIF-1A [Translation, ribosomal structure and biogenesis]
Probab=20.55 E-value=63 Score=25.92 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=11.5
Q ss_pred hHHHHHHHHHhcCCCCCCCC
Q 036790 48 FYTQVLHLMNKMNIPAPFRM 67 (121)
Q Consensus 48 FY~QVLHLMNkmnLppPF~~ 67 (121)
|.-||+.|=..---|-=|..
T Consensus 90 ~~d~vr~lqk~g~WPe~F~d 109 (167)
T KOG2925|consen 90 FFDQVRLLQKSGEWPEIFKD 109 (167)
T ss_pred ccHHHHHHHHcCCcchhhhh
Confidence 55677666555555555543
No 31
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=20.26 E-value=91 Score=16.06 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=10.0
Q ss_pred HHHHHHHHhcCCCC
Q 036790 50 TQVLHLMNKMNIPA 63 (121)
Q Consensus 50 ~QVLHLMNkmnLpp 63 (121)
.+|++.|.+-|+.|
T Consensus 21 ~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 21 LQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHhCCCC
Confidence 46677888877754
Done!