Query 036790
Match_columns 121
No_of_seqs 69 out of 71
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 08:52:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2np0_B Synaptotagmin-2; botuli 56.8 8.5 0.00029 20.9 2.4 21 33-63 6-26 (26)
2 3r2k_A Bacterioferritin, BFR; 34.1 14 0.0005 24.9 1.2 31 31-61 115-146 (154)
3 3uoi_A Bacterioferritin, BFR; 30.2 25 0.00084 23.8 1.8 31 31-61 118-148 (161)
4 2itb_A TRNA-(MS(2)IO(6)A)-hydr 27.9 30 0.001 27.2 2.2 17 47-63 72-88 (206)
5 3e98_A GAF domain of unknown f 27.1 13 0.00045 28.8 0.0 31 36-66 34-64 (252)
6 1cnt_1 CNTF, ciliary neurotrop 26.5 89 0.0031 24.3 4.6 38 27-64 98-135 (187)
7 2iu1_A EIF5, eukaryotic transl 25.8 22 0.00077 27.2 1.1 7 50-56 103-109 (208)
8 1oy3_D Transcription factor in 24.7 16 0.00053 25.4 0.0 11 109-119 270-280 (282)
9 2wl8_A Peroxisomal biogenesis 19.6 1.1E+02 0.0038 22.0 3.7 27 33-59 66-101 (126)
10 3fvb_A Bacterioferritin; niaid 16.7 64 0.0022 22.8 1.8 29 32-60 138-166 (182)
No 1
>2np0_B Synaptotagmin-2; botulinum, neurotoxin, synaptotagamin, receptor, hydrolase; 2.62A {Mus musculus}
Probab=56.84 E-value=8.5 Score=20.91 Aligned_cols=21 Identities=14% Similarity=0.539 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHhcCCCC
Q 036790 33 NILTNIVNALIAVPRFYTQVLHLMNKMNIPA 63 (121)
Q Consensus 33 ~il~nI~~~L~~~p~FY~QVLHLMNkmnLpp 63 (121)
+.++++.. +|+.|+ |||+||+
T Consensus 6 d~~~~~k~------kf~nel----~kiplp~ 26 (26)
T 2np0_B 6 DMFAKLKE------KFFNEI----NKXXXXX 26 (26)
T ss_pred hHHHHHHH------HHHHHH----HhhhcCC
Confidence 34555554 788886 8999885
No 2
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A
Probab=34.07 E-value=14 Score=24.86 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=21.4
Q ss_pred CHHHHHHHHHH-HHhCChhHHHHHHHHHhcCC
Q 036790 31 DGNILTNIVNA-LIAVPRFYTQVLHLMNKMNI 61 (121)
Q Consensus 31 ~~~il~nI~~~-L~~~p~FY~QVLHLMNkmnL 61 (121)
+.++|..|... -..+=.|+.+-|.++.|||+
T Consensus 115 t~~~l~~~~~e~ee~h~~~l~~~l~~i~~~g~ 146 (154)
T 3r2k_A 115 SRDILKAQLADTEEDHAYWLEQQLGLIARMGL 146 (154)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Confidence 34556666666 66667777777888888775
No 3
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=30.18 E-value=25 Score=23.79 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHhCChhHHHHHHHHHhcCC
Q 036790 31 DGNILTNIVNALIAVPRFYTQVLHLMNKMNI 61 (121)
Q Consensus 31 ~~~il~nI~~~L~~~p~FY~QVLHLMNkmnL 61 (121)
+.++|..|......+=.|+.+.|.++.|||+
T Consensus 118 t~~~l~~~~~eee~h~~~l~~~l~~i~~~g~ 148 (161)
T 3uoi_A 118 SAVLLEKIVADEEEHIDYLETQLELMDKLGE 148 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 3455666666666666777778888888876
No 4
>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative ATTH, structural genomics, joint center for structu genomics, JCSG; 2.05A {Pseudomonas putida} SCOP: a.25.1.7
Probab=27.86 E-value=30 Score=27.17 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHhcCCCC
Q 036790 47 RFYTQVLHLMNKMNIPA 63 (121)
Q Consensus 47 ~FY~QVLHLMNkmnLpp 63 (121)
.-|.||+.+|.|.|++-
T Consensus 72 ~HFeqVl~im~~Rgi~l 88 (206)
T 2itb_A 72 VHHEQVLRLMKRRGVPL 88 (206)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 35899999999999863
No 5
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=27.14 E-value=13 Score=28.81 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHhCChhHHHHHHHHHhcCCCCCCC
Q 036790 36 TNIVNALIAVPRFYTQVLHLMNKMNIPAPFR 66 (121)
Q Consensus 36 ~nI~~~L~~~p~FY~QVLHLMNkmnLppPF~ 66 (121)
..|+.-|..+|+|+.+=-.||..|.+|-|-+
T Consensus 34 ~~V~~yL~~~PdFf~~~~~Ll~~L~lph~~~ 64 (252)
T 3e98_A 34 EQVAAYLSQHPEFFVEHDELIPELRIPHQPG 64 (252)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHhCCHHHhhCHHHHHhCCCCCCCC
Confidence 4588999999999999999999999998854
No 6
>1cnt_1 CNTF, ciliary neurotrophic factor; cytokine, growth factor; 2.40A {Homo sapiens} SCOP: a.26.1.1
Probab=26.55 E-value=89 Score=24.33 Aligned_cols=38 Identities=26% Similarity=0.466 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHHhCChhHHHHHHHHHhcCCCCC
Q 036790 27 YPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAP 64 (121)
Q Consensus 27 YPpp~~~il~nI~~~L~~~p~FY~QVLHLMNkmnLppP 64 (121)
.+|-....+..|..+++.+-.|-.|+--+|--+++..|
T Consensus 98 ~~P~~~~l~~~L~~~~l~v~~la~~l~~im~~L~~~iP 135 (187)
T 1cnt_1 98 FTPTEGDFHQAIHTLLLQVAAFAYQIEELMILLEYKIP 135 (187)
T ss_dssp TSSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34555889999999999999999999999999999988
No 7
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=25.76 E-value=22 Score=27.17 Aligned_cols=7 Identities=29% Similarity=0.501 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 036790 50 TQVLHLM 56 (121)
Q Consensus 50 ~QVLHLM 56 (121)
-+||+.|
T Consensus 103 ~~IL~~L 109 (208)
T 2iu1_A 103 PHILKEM 109 (208)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
No 8
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=24.67 E-value=16 Score=25.37 Aligned_cols=11 Identities=9% Similarity=0.069 Sum_probs=0.0
Q ss_pred ccccccCcccc
Q 036790 109 ESEMEFSDEVM 119 (121)
Q Consensus 109 ESElESddEe~ 119 (121)
++|.|+++|++
T Consensus 270 ~~~~~~~~~~~ 280 (282)
T 1oy3_D 270 DSDNRDEGDEY 280 (282)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 33333333333
No 9
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=19.57 E-value=1.1e+02 Score=21.98 Aligned_cols=27 Identities=22% Similarity=0.408 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCC---------hhHHHHHHHHHhc
Q 036790 33 NILTNIVNALIAVP---------RFYTQVLHLMNKM 59 (121)
Q Consensus 33 ~il~nI~~~L~~~p---------~FY~QVLHLMNkm 59 (121)
.|+..|+..+-+-+ +=+.+|+.||.+|
T Consensus 66 ~lv~~I~~~fE~~~~~D~~~~~~~~~~~i~~Lmq~m 101 (126)
T 2wl8_A 66 SVMCKICEQFEAETPTDSETTQKARFEMVLDLMQQL 101 (126)
T ss_dssp HHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHH
Confidence 68889999888865 3467999999996
No 10
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308}
Probab=16.67 E-value=64 Score=22.81 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHhcC
Q 036790 32 GNILTNIVNALIAVPRFYTQVLHLMNKMN 60 (121)
Q Consensus 32 ~~il~nI~~~L~~~p~FY~QVLHLMNkmn 60 (121)
.++|..|...-..+=.++.+.|.++.+|+
T Consensus 138 ~~~L~~il~eEe~h~~~l~~~l~~i~~~g 166 (182)
T 3fvb_A 138 KQLFDELLADEEGHIDFLETQLDLLAKIG 166 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34555555555555566666777777776
Done!