Query 036790
Match_columns 121
No_of_seqs 69 out of 71
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 08:52:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036790.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036790hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2itba1 a.25.1.7 (A:3-201) Put 51.3 7 0.00051 28.6 3.8 40 23-63 46-85 (199)
2 d2masa_ c.70.1.1 (A:) Inosine- 35.6 6.2 0.00045 28.7 1.3 18 35-52 128-145 (313)
3 d2htna1 a.25.1.1 (A:1-158) Bac 24.9 16 0.0012 23.3 1.8 31 31-61 116-146 (158)
4 d2f05a1 a.59.1.1 (A:1-85) Sin3 24.0 22 0.0016 21.7 2.3 26 34-59 13-38 (85)
5 d1xrsb2 d.230.4.1 (B:33-84) D- 23.3 17 0.0013 21.7 1.5 12 53-64 21-32 (52)
6 d1xd7a_ a.4.5.55 (A:) Hypothet 21.5 33 0.0024 21.5 2.8 31 35-65 21-51 (127)
7 d1s5qb_ a.59.1.1 (B:) Sin3A {M 20.1 29 0.0021 21.3 2.3 26 34-59 16-41 (89)
8 d1kvka2 d.58.26.3 (A:226-394) 17.6 50 0.0036 21.8 3.2 31 28-58 15-45 (169)
9 d1cnt1_ a.26.1.1 (1:) Ciliary 17.3 82 0.006 21.9 4.5 38 27-64 88-125 (177)
10 d1j75a_ a.4.5.19 (A:) Dlm-1 {M 17.0 44 0.0032 20.1 2.5 14 46-59 30-43 (57)
No 1
>d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas putida [TaxId: 303]}
Probab=51.32 E-value=7 Score=28.62 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=25.8
Q ss_pred ccccCCCCCHHHHHHHHHHHHhCChhHHHHHHHHHhcCCCC
Q 036790 23 LEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPA 63 (121)
Q Consensus 23 L~Y~YPpp~~~il~nI~~~L~~~p~FY~QVLHLMNkmnLpp 63 (121)
|-|+||. ..+++...+.--.--=.-|.||+.+|.+.|+.-
T Consensus 46 li~rYp~-~~~Lv~~m~~La~EEL~HF~qV~~im~~Rgi~l 85 (199)
T d2itba1 46 LIAKYNT-HLDLINMMSRLAREELVHHEQVLRLMKRRGVPL 85 (199)
T ss_dssp HHHHTTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3456665 555555444333333345899999999999974
No 2
>d2masa_ c.70.1.1 (A:) Inosine-uridine nucleoside N-ribohydrolase, IU-NH {Crithidia fasciculata [TaxId: 5656]}
Probab=35.56 E-value=6.2 Score=28.68 Aligned_cols=18 Identities=44% Similarity=0.464 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCChhHHHH
Q 036790 35 LTNIVNALIAVPRFYTQV 52 (121)
Q Consensus 35 l~nI~~~L~~~p~FY~QV 52 (121)
|+|||.+|...|.|..+|
T Consensus 128 LTNlA~al~~~P~~~~~i 145 (313)
T d2masa_ 128 LTNIAMAARLEPRIVDRV 145 (313)
T ss_dssp SHHHHHHHHHCTHHHHHS
T ss_pred chHHHHHHHhhhhhhhhc
Confidence 599999999999998877
No 3
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}
Probab=24.87 E-value=16 Score=23.25 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHhCChhHHHHHHHHHhcCC
Q 036790 31 DGNILTNIVNALIAVPRFYTQVLHLMNKMNI 61 (121)
Q Consensus 31 ~~~il~nI~~~L~~~p~FY~QVLHLMNkmnL 61 (121)
+..+|..|...-..+=.|+.+.|.++.|+|+
T Consensus 116 t~~~l~~il~eee~h~~~l~~~L~~~~~~g~ 146 (158)
T d2htna1 116 SRDMMIEILRDEEGHIDWLETELDLIQKMGL 146 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Confidence 5667777888888888888889999998875
No 4
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.04 E-value=22 Score=21.67 Aligned_cols=26 Identities=15% Similarity=0.451 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHhc
Q 036790 34 ILTNIVNALIAVPRFYTQVLHLMNKM 59 (121)
Q Consensus 34 il~nI~~~L~~~p~FY~QVLHLMNkm 59 (121)
-|..|-..+...|.-|.+.|.+|+.-
T Consensus 13 yl~kVK~rf~~~p~~Y~~FL~il~~f 38 (85)
T d2f05a1 13 YVNKIKTRFLDHPEIYRSFLEILHTY 38 (85)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 36677778888999999999999964
No 5
>d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=23.31 E-value=17 Score=21.69 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=10.2
Q ss_pred HHHHHhcCCCCC
Q 036790 53 LHLMNKMNIPAP 64 (121)
Q Consensus 53 LHLMNkmnLppP 64 (121)
..|++||||..|
T Consensus 21 k~la~kMGl~~p 32 (52)
T d1xrsb2 21 KQIALKMGLEEP 32 (52)
T ss_dssp HHHHHTTSSCCC
T ss_pred HHHHHHhCCCch
Confidence 568999999877
No 6
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}
Probab=21.46 E-value=33 Score=21.47 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHhcCCCCCC
Q 036790 35 LTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65 (121)
Q Consensus 35 l~nI~~~L~~~p~FY~QVLHLMNkmnLppPF 65 (121)
...||..+-..+.|=.|||+.++|=||=--.
T Consensus 21 s~~IA~~~~~~~~~v~kIl~~L~~aglV~s~ 51 (127)
T d1xd7a_ 21 SEIIADSVNTNPVVVRRMISLLKKADILTSR 51 (127)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHhCccccc
Confidence 4678999999999999999999999986543
No 7
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.09 E-value=29 Score=21.34 Aligned_cols=26 Identities=19% Similarity=0.439 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHhc
Q 036790 34 ILTNIVNALIAVPRFYTQVLHLMNKM 59 (121)
Q Consensus 34 il~nI~~~L~~~p~FY~QVLHLMNkm 59 (121)
-|..|=.++...|.-|.+.|.+|+..
T Consensus 16 yl~kVK~~f~d~p~~Y~~FL~il~~f 41 (89)
T d1s5qb_ 16 YVNKIKNRFQGQPDIYKAFLEILHTY 41 (89)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHH
Confidence 36677778888899999999999864
No 8
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.59 E-value=50 Score=21.82 Aligned_cols=31 Identities=16% Similarity=0.387 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHHhCChhHHHHHHHHHh
Q 036790 28 PPVDGNILTNIVNALIAVPRFYTQVLHLMNK 58 (121)
Q Consensus 28 Ppp~~~il~nI~~~L~~~p~FY~QVLHLMNk 58 (121)
+..|..++..+......+|++|..+++-|+.
T Consensus 15 ~r~T~~~v~~V~~~~~~~~~~~~~~l~~~~~ 45 (169)
T d1kvka2 15 PRSTKALVAGVRSRLIKFPEIMAPLLTSIDA 45 (169)
T ss_dssp CCCHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhChHHHHHHHHHHhH
Confidence 3557888888888888899888888766654
No 9
>d1cnt1_ a.26.1.1 (1:) Ciliary neurotrophic factor (CNTF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.33 E-value=82 Score=21.85 Aligned_cols=38 Identities=26% Similarity=0.466 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHHhCChhHHHHHHHHHhcCCCCC
Q 036790 27 YPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAP 64 (121)
Q Consensus 27 YPpp~~~il~nI~~~L~~~p~FY~QVLHLMNkmnLppP 64 (121)
..+.+...++.+..+++.+-.|=.+|--+|..|+.+.|
T Consensus 88 LnP~~~~l~~~L~~~~~~~~gL~~~i~~im~~Lg~~~p 125 (177)
T d1cnt1_ 88 FTPTEGDFHQAIHTLLLQVAAFAYQIEELMILLEYKIP 125 (177)
T ss_dssp TSSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 45677788899999999999999999999999998765
No 10
>d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.99 E-value=44 Score=20.12 Aligned_cols=14 Identities=29% Similarity=0.261 Sum_probs=11.1
Q ss_pred ChhHHHHHHHHHhc
Q 036790 46 PRFYTQVLHLMNKM 59 (121)
Q Consensus 46 p~FY~QVLHLMNkm 59 (121)
.+--+||||-|.|-
T Consensus 30 kk~lNqVL~rlkke 43 (57)
T d1j75a_ 30 KKTLNQVLYRLKKE 43 (57)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 35679999999874
Done!