AmiGO: BLAST Results


BLAST match view associations BLAST with AT2G27330 AT2G27330 AT2G27330	protein from Arabidopsis thaliana	7.7e-16
BLAST match view associations BLAST with AT5G06210 AT5G06210 AT5G06210	protein from Arabidopsis thaliana	1.6e-15
BLAST match view associations BLAST with AT2G37510 AT2G37510 AT2G37510	protein from Arabidopsis thaliana	3.3e-15
BLAST match view associations BLAST with AT1G73530 AT1G73530 AT1G73530	protein from Arabidopsis thaliana	1.0e-13
BLAST match view associations BLAST with AT5G54580 AT5G54580 AT5G54580	protein from Arabidopsis thaliana	1.5e-12
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Xenopus (Silurana) tropicalis	2.4e-12
BLAST match view associations BLAST with AT3G46020 AT3G46020 AT3G46020	protein from Arabidopsis thaliana	2.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.4e-12
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	8.2e-12
BLAST match view associations BLAST with zgc:112425 zgc:112425 zgc:112425	gene_product from Danio rerio	1.0e-11
BLAST match view associations BLAST with cirbp-b cirbp-b cirbp-b Cold-inducible RNA-binding protein B	protein from Xenopus laevis	1.7e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Bos taurus	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Sus scrofa	3.5e-11
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Cricetulus griseus	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Pongo abelii	3.5e-11
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	protein from Mus musculus	3.5e-11
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	gene from Rattus norvegicus	3.5e-11
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	4.5e-11
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	4.5e-11
BLAST match view associations BLAST with F6RBQ9 F6RBQ9 F6RBQ9 Uncharacterized protein	protein from Bos taurus	5.8e-11
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Putative RNA-binding protein 3	protein from Homo sapiens	5.8e-11
BLAST match view associations BLAST with CCR1 CCR1 CCR1 AT4G39260	protein from Arabidopsis thaliana	5.8e-11
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP cDNA FLJ52850, moderately similar to Cold-inducible RNA-binding protein	protein from Homo sapiens	7.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	9.3e-11
BLAST match view associations BLAST with ORRM1 ORRM1 ORRM1 AT3G20930	protein from Arabidopsis thaliana	1.1e-10
BLAST match view associations BLAST with cirbp-a cirbp-a cirbp-a Cold-inducible RNA-binding protein A	protein from Xenopus laevis	1.2e-10
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif (RNP1, RRM) protein 3	gene from Rattus norvegicus	1.2e-10
BLAST match view associations BLAST with ATRZ-1A ATRZ-1A ATRZ-1A AT3G26420	protein from Arabidopsis thaliana	1.5e-10
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	2.0e-10
BLAST match view associations BLAST with AT4G20030 AT4G20030 AT4G20030	protein from Arabidopsis thaliana	2.5e-10
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	3.2e-10
BLAST match view associations BLAST with I3LQ36 I3LQ36 I3LQ36 Uncharacterized protein	protein from Sus scrofa	3.2e-10
BLAST match view associations BLAST with AT5G19030 AT5G19030 AT5G19030	protein from Arabidopsis thaliana	4.1e-10
BLAST match view associations BLAST with blt801 blt801 blt801 Glycine-rich RNA-binding protein blt801	protein from Hordeum vulgare	5.2e-10
BLAST match view associations BLAST with MCA1010 MCA1010 MCA1010 RNA-binding protein	protein from Methylococcus capsulatus str. Bath	5.2e-10
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Gallus gallus	5.7e-10
BLAST match view associations BLAST with AT4G13860 AT4G13860 AT4G13860	protein from Arabidopsis thaliana	6.6e-10
BLAST match view associations BLAST with GSU1324 GSU1324 GSU1324 RNA-binding protein	protein from Geobacter sulfurreducens PCA	8.4e-10
BLAST match view associations BLAST with GSU_1324 GSU_1324 GSU_1324 RNA-binding protein	protein from Geobacter sulfurreducens PCA	8.4e-10
BLAST match view associations BLAST with CG11266 CG11266 CG11266	protein from Drosophila melanogaster	1.1e-09
BLAST match view associations BLAST with AT5G59860 AT5G59860 AT5G59860	protein from Arabidopsis thaliana	1.4e-09
BLAST match view associations BLAST with RBM39 RBM39 RBM39 RNA-binding region (RNP1, RRM) containing 2, isoform CRA_b	protein from Homo sapiens	1.7e-09
BLAST match view associations BLAST with GR-RBP2 GR-RBP2 GR-RBP2 AT4G13850	protein from Arabidopsis thaliana	1.8e-09
BLAST match view associations BLAST with RBM39 RBM39 RBM39 RNA-binding region (RNP1, RRM) containing 2, isoform CRA_f	protein from Homo sapiens	2.2e-09
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	2.2e-09
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 Glycine-rich RNA-binding protein	protein from Coxiella burnetii RSA 493	2.2e-09
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 nucleic acid binding domain protein	protein from Coxiella burnetii RSA 493	2.2e-09
BLAST match view associations BLAST with Rbm39 Rbm39 Rbm39 RNA binding motif protein 39	gene from Rattus norvegicus	3.1e-09
BLAST match view associations BLAST with RBM39 RBM39 RBM39 Uncharacterized protein	protein from Bos taurus	3.1e-09
BLAST match view associations BLAST with RBM39 RBM39 RBM39 Uncharacterized protein	protein from Sus scrofa	3.1e-09
BLAST match view associations BLAST with LOC100858247 LOC100858247 LOC100858247 Uncharacterized protein	protein from Gallus gallus	3.2e-09
BLAST match view associations BLAST with RBM39 RBM39 RBM39 Uncharacterized protein	protein from Canis lupus familiaris	3.2e-09
BLAST match view associations BLAST with RBM39 RBM39 RBM39 RNA-binding protein 39	protein from Homo sapiens	3.2e-09
BLAST match view associations BLAST with Rbm39 Rbm39 Rbm39 RNA binding motif protein 39	protein from Mus musculus	3.2e-09
BLAST match view associations BLAST with MGG_01268 MGG_01268 MGG_01268 Nuclear localization sequence binding protein	protein from Magnaporthe oryzae 70-15	3.5e-09
BLAST match view associations BLAST with LOC100514264 LOC100514264 LOC100514264 Uncharacterized protein	protein from Sus scrofa	3.6e-09
BLAST match view associations BLAST with PABPC3 PABPC3 PABPC3 Polyadenylate-binding protein 3	protein from Homo sapiens	4.6e-09
BLAST match view associations BLAST with rbm39a rbm39a rbm39a RNA binding motif protein 39a	gene_product from Danio rerio	5.1e-09
BLAST match view associations BLAST with epabp-b epabp-b epabp-b Embryonic polyadenylate-binding protein B	protein from Xenopus laevis	5.3e-09
BLAST match view associations BLAST with PABPC5 PABPC5 PABPC5 Polyadenylate-binding protein 5	protein from Homo sapiens	6.6e-09
BLAST match view associations BLAST with epabp-a epabp-a epabp-a Embryonic polyadenylate-binding protein A	protein from Xenopus laevis	6.8e-09
BLAST match view associations BLAST with RBM23 RBM23 RBM23 Probable RNA-binding protein 23	protein from Homo sapiens	7.6e-09
BLAST match view associations BLAST with GR-RBP6 GR-RBP6 GR-RBP6 AT1G18630	protein from Arabidopsis thaliana	7.6e-09
BLAST match view associations BLAST with GRP7 GRP7 GRP7 AT2G21660	protein from Arabidopsis thaliana	7.6e-09
BLAST match view associations BLAST with RBM23 RBM23 RBM23 Probable RNA-binding protein 23	protein from Homo sapiens	8.0e-09
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Canis lupus familiaris	8.7e-09
BLAST match view associations BLAST with GR-RBP5 GR-RBP5 GR-RBP5 AT1G74230	protein from Arabidopsis thaliana	8.9e-09
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	9.1e-09
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Canis lupus familiaris	1.0e-08
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	1.1e-08
BLAST match view associations BLAST with PABPC3 PABPC3 PABPC3 Polyadenylate-binding protein 3	protein from Homo sapiens	1.1e-08
BLAST match view associations BLAST with epabp epabp epabp Embryonic polyadenylate-binding protein	protein from Xenopus (Silurana) tropicalis	1.1e-08
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Sus scrofa	1.1e-08
BLAST match view associations BLAST with AT1G33470 AT1G33470 AT1G33470	protein from Arabidopsis thaliana	1.1e-08
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	1.1e-08
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Sus scrofa	1.4e-08
BLAST match view associations BLAST with MGG_11418 MGG_11418 MGG_11418 Nucleic acid-binding protein	protein from Magnaporthe oryzae 70-15	1.4e-08
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Canis lupus familiaris	1.5e-08
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 PABPC4 protein	protein from Bos taurus	1.5e-08
BLAST match view associations BLAST with AT2G37220 AT2G37220 AT2G37220	protein from Arabidopsis thaliana	1.5e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.6e-08
BLAST match view associations BLAST with PSRP2 PSRP2 PSRP2 AT3G52150	protein from Arabidopsis thaliana	1.7e-08
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Bos taurus	1.8e-08
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Homo sapiens	2.0e-08
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036791
        (157 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2039590 - symbol:AT2G27330 species:3702 "Arabi...   198  7.7e-16   1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi...   195  1.6e-15   1
TAIR|locus:2049816 - symbol:AT2G37510 species:3702 "Arabi...   192  3.3e-15   1
TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi...   178  1.0e-13   1
TAIR|locus:2172144 - symbol:AT5G54580 species:3702 "Arabi...   167  1.5e-12   1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi...   165  2.4e-12   1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi...   165  2.4e-12   1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi...   161  6.4e-12   1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ...   160  8.2e-12   1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"...   159  1.0e-11   1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin...   157  1.7e-11   1
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"...   154  3.5e-11   1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"...   154  3.5e-11   1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"...   154  3.5e-11   1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"...   154  3.5e-11   1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"...   154  3.5e-11   1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"...   154  3.5e-11   1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi...   154  3.5e-11   1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi...   154  3.5e-11   1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi...   154  3.5e-11   1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi...   154  3.5e-11   1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi...   154  3.5e-11   1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi...   154  3.5e-11   1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"...   154  3.5e-11   1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ...   154  3.5e-11   1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi...   154  3.5e-11   1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi...   154  3.5e-11   1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding...   154  3.5e-11   1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro...   154  3.5e-11   1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi...   153  4.5e-11   1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ...   153  4.5e-11   1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot...   153  4.5e-11   1
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer...   152  5.8e-11   1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein...   152  5.8e-11   1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot...   152  5.8e-11   1
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,...   152  5.8e-11   1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin...   151  7.4e-11   1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi...   153  7.5e-11   1
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi...   154  9.3e-11   1
TAIR|locus:2088756 - symbol:AT3G20930 species:3702 "Arabi...   156  1.1e-10   1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin...   149  1.2e-10   1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p...   149  1.2e-10   1
TAIR|locus:2079276 - symbol:ATRZ-1A species:3702 "Arabido...   149  1.5e-10   1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ...   147  2.0e-10   1
TAIR|locus:2119797 - symbol:AT4G20030 species:3702 "Arabi...   146  2.5e-10   1
UNIPROTKB|E2R228 - symbol:E2R228 "Uncharacterized protein...   145  3.2e-10   1
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein...   145  3.2e-10   1
TAIR|locus:2179624 - symbol:AT5G19030 species:3702 "Arabi...   144  4.1e-10   1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin...   143  5.2e-10   1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s...   143  5.2e-10   1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei...   153  5.7e-10   1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi...   142  6.6e-10   1
UNIPROTKB|Q74DJ2 - symbol:GSU1324 "RNA-binding protein" s...   141  8.4e-10   1
TIGR_CMR|GSU_1324 - symbol:GSU_1324 "RNA-binding protein"...   141  8.4e-10   1
FB|FBgn0031883 - symbol:CG11266 species:7227 "Drosophila ...   150  1.1e-09   1
TAIR|locus:2168133 - symbol:AT5G59860 species:3702 "Arabi...   139  1.4e-09   1
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ...   145  1.7e-09   1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3...   138  1.8e-09   1
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1...   145  2.2e-09   1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p...   137  2.2e-09   1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind...   137  2.2e-09   1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding...   137  2.2e-09   1
RGD|1310071 - symbol:Rbm39 "RNA binding motif protein 39"...   145  3.1e-09   1
UNIPROTKB|F6QIA5 - symbol:RBM39 "Uncharacterized protein"...   145  3.1e-09   1
UNIPROTKB|F2Z5I2 - symbol:RBM39 "Uncharacterized protein"...   145  3.1e-09   1
UNIPROTKB|E1BRU3 - symbol:LOC100858247 "Uncharacterized p...   145  3.2e-09   1
UNIPROTKB|E2R4L0 - symbol:RBM39 "Uncharacterized protein"...   145  3.2e-09   1
UNIPROTKB|Q14498 - symbol:RBM39 "RNA-binding protein 39" ...   145  3.2e-09   1
MGI|MGI:2157953 - symbol:Rbm39 "RNA binding motif protein...   145  3.2e-09   1
UNIPROTKB|F1MA64 - symbol:Rbm39 "Protein Rbm39" species:1...   145  3.2e-09   1
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization...   144  3.5e-09   1
UNIPROTKB|I3LH22 - symbol:LOC100514264 "Uncharacterized p...   135  3.6e-09   1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p...   137  4.6e-09   1
ZFIN|ZDB-GENE-040426-2852 - symbol:rbm39a "RNA binding mo...   143  5.1e-09   1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat...   144  5.3e-09   1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p...   133  6.6e-09   1
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat...   143  6.8e-09   1
UNIPROTKB|G3V5Z6 - symbol:RBM23 "Probable RNA-binding pro...   132  7.6e-09   1
TAIR|locus:2027438 - symbol:GR-RBP6 "glycine-rich RNA-bin...   132  7.6e-09   1
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702...   132  7.6e-09   1
UNIPROTKB|H0YJJ3 - symbol:RBM23 "Probable RNA-binding pro...   132  8.0e-09   1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein...   142  8.7e-09   1
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3...   136  8.9e-09   1
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p...   141  9.1e-09   1
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein...   142  1.0e-08   1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p...   141  1.1e-08   1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p...   137  1.1e-08   1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-...   141  1.1e-08   1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein...   141  1.1e-08   1
TAIR|locus:2006998 - symbol:AT1G33470 species:3702 "Arabi...   133  1.1e-08   1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p...   141  1.1e-08   1
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei...   140  1.4e-08   1
UNIPROTKB|G4MYV6 - symbol:MGG_11418 "Nucleic acid-binding...   134  1.4e-08   1
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei...   140  1.5e-08   1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein...   140  1.5e-08   1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi...   134  1.5e-08   1
UNIPROTKB|K7ELT6 - symbol:CIRBP "Cold-inducible RNA-bindi...   129  1.6e-08   1
TAIR|locus:2083810 - symbol:PSRP2 "plastid-speciﬁc...   132  1.7e-08   1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei...   139  1.8e-08   1
UNIPROTKB|H0YAP2 - symbol:PABPC1 "Polyadenylate-binding p...   128  2.0e-08   1

WARNING:  Descriptions of 565 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2039590 [details] [associations]
            symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
            IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
            ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
            EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
            TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
            PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
            Uniprot:Q1ECN0
        Length = 116

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 37/79 (46%), Positives = 58/79 (73%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SFS+T+E L  AFSQ+GQV +  +IMD  + R KG+ YVT S++EEA+KAL+++N +L+
Sbjct:    28 ISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLV 87

Query:   125 DGRVIFVDNVRPSRRYNTD 143
             DGRV+ +D  + ++    D
Sbjct:    88 DGRVVILDTTKAAKHNPPD 106


>TAIR|locus:2160752 [details] [associations]
            symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
            HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
            IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
            ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
            PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
            KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
            PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
            Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
        Length = 146

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 38/68 (55%), Positives = 55/68 (80%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF TT++ L++AFS+ GQV EA I+MD   +RSKG+G+VT ++ +EAQKAL++ NG+ L
Sbjct:    41 LSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQL 100

Query:   125 DGRVIFVD 132
             +GR IFVD
Sbjct:   101 NGRTIFVD 108


>TAIR|locus:2049816 [details] [associations]
            symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
            HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
            RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
            SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
            KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
            InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
            ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
            Uniprot:Q8S8L4
        Length = 142

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 38/68 (55%), Positives = 48/68 (70%)

Query:    69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             TT E L DAF+ FGQ+ +A +I D    RSKG+G+VT +T E+A+KA  +MN K LDG V
Sbjct:    45 TTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWV 104

Query:   129 IFVDNVRP 136
             IFVD  RP
Sbjct:   105 IFVDPARP 112


>TAIR|locus:2206850 [details] [associations]
            symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
            EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
            RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
            SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
            GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
            HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
            ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
        Length = 181

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/71 (47%), Positives = 47/71 (66%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF TT++ L D F QFG +    ++MD   NR KG+ ++   TEEEA KA+  M+GK L
Sbjct:    84 LSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFL 143

Query:   125 DGRVIFVDNVR 135
             DGRVIFV+  +
Sbjct:   144 DGRVIFVEEAK 154


>TAIR|locus:2172144 [details] [associations]
            symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005739
            "mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
            HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
            EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
            ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
            PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
            KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
            InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
            ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
            Uniprot:Q9FIU6
        Length = 156

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 36/89 (40%), Positives = 54/89 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S  TT E L  AF+QFG+V +A ++ D     SKG+G+V  +T E++ K +  M+GK L
Sbjct:    63 LSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFL 122

Query:   125 DGRVIFVDNVRP---SRRYNTDASLARQP 150
             DG VIF +  RP   S+ Y    +++R P
Sbjct:   123 DGWVIFAEYARPREQSQSYQPQNNMSRPP 151


>UNIPROTKB|Q28IQ9 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
            [GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
            development" evidence=ISS] [GO:0016477 "cell migration"
            evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
            [GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
            regulation of translation" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0048793 "pronephros development"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
            GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
            GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
            RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
            SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
            Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
        Length = 166

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 32/73 (43%), Positives = 47/73 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             ++F TT+E L   FS++GQV E  ++ D    RS+G+G+VT    E+A+ A++ MNGK +
Sbjct:    13 LNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSV 72

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    73 DGRQIRVDQAGKS 85


>TAIR|locus:2077137 [details] [associations]
            symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
            IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
            ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
            GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
            OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
            Genevestigator:Q9LZT1 Uniprot:Q9LZT1
        Length = 102

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 31/68 (45%), Positives = 48/68 (70%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S  TT + L   FS FGQ+ EA +I D    R KG+G++T  +E++A+KAL  ++GK++
Sbjct:    14 LSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIV 73

Query:   125 DGRVIFVD 132
             DGR+IFV+
Sbjct:    74 DGRLIFVE 81


>UNIPROTKB|K7ENX8 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
        Length = 89

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 31/74 (41%), Positives = 50/74 (67%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query:   125 DGRVIFVDN-VRPS 137
             DGR I VD  +RPS
Sbjct:    73 DGRQIRVDQPLRPS 86


>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
            symbol:cirbp "cold inducible RNA binding protein"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
            to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
            EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
            Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
            Uniprot:F1R6L3
        Length = 224

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 33/96 (34%), Positives = 58/96 (60%)

Query:    42 CIVRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGY 101
             C+   +S++I+       +    +S+ TT++ L +AFS++G + +  +I D   +RS+G+
Sbjct:     8 CVFNRNSEVIIMSDEGKLF-IGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGF 66

Query:   102 GYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPS 137
             G+VT    E+A+ A+  MNGK +DGR+I VD    S
Sbjct:    67 GFVTFENPEDAKDAMAAMNGKQVDGRMIRVDEAGKS 102


>ZFIN|ZDB-GENE-050417-329 [details] [associations]
            symbol:zgc:112425 "zgc:112425" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
            OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
            EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
            UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
            Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
            KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
        Length = 185

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 31/68 (45%), Positives = 46/68 (67%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF TT++ L DAFS++G +T   +  +   NRS+G+G+VT    ++A+ AL  MNGK +
Sbjct:    12 LSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGMNGKSV 71

Query:   125 DGRVIFVD 132
             DGR I VD
Sbjct:    72 DGRTIRVD 79


>UNIPROTKB|Q9DED4 [details] [associations]
            symbol:cirbp-b "Cold-inducible RNA-binding protein B"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
            "gastrulation" evidence=IMP] [GO:0009409 "response to cold"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
            binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
            "pronephros development" evidence=ISS] [GO:0060212 "negative
            regulation of nuclear-transcribed mRNA poly(A) tail shortening"
            evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
            EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
            HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
            PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
            Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
        Length = 166

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 29/73 (39%), Positives = 47/73 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             ++F T +E L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    12 LNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAV 71

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    72 DGRQIRVDQAGKS 84


>UNIPROTKB|H9KZV5 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
            rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
        Length = 190

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/73 (39%), Positives = 47/73 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    73 DGRQIRVDQAGKS 85


>UNIPROTKB|H9L0U4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
        Length = 167

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/73 (39%), Positives = 47/73 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    73 DGRQIRVDQAGKS 85


>UNIPROTKB|H9L3B3 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
        Length = 172

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/73 (39%), Positives = 47/73 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    73 DGRQIRVDQAGKS 85


>UNIPROTKB|Q3SZN4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
            HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
            GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
            IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
            Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
            InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
        Length = 213

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/73 (39%), Positives = 47/73 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    73 DGRQIRVDQAGKS 85


>UNIPROTKB|E2R6G2 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
        Length = 172

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/73 (39%), Positives = 47/73 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    73 DGRQIRVDQAGKS 85


>UNIPROTKB|F6XHA7 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
            OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
            EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
            Uniprot:F6XHA7
        Length = 185

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/73 (39%), Positives = 47/73 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    73 DGRQIRVDQAGKS 85


>UNIPROTKB|K7EJV5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
        Length = 105

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/73 (39%), Positives = 47/73 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    73 DGRQIRVDQAGKS 85


>UNIPROTKB|K7EMY9 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
        Length = 159

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/73 (39%), Positives = 47/73 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    73 DGRQIRVDQAGKS 85


>UNIPROTKB|K7EPM4 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
            Ensembl:ENST00000586773 Ensembl:ENST00000589235
            Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
        Length = 168

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/73 (39%), Positives = 47/73 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    73 DGRQIRVDQAGKS 85


>UNIPROTKB|K7EQR7 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
        Length = 202

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/73 (39%), Positives = 47/73 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    73 DGRQIRVDQAGKS 85


>UNIPROTKB|K7ER40 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
        Length = 174

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/73 (39%), Positives = 47/73 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    73 DGRQIRVDQAGKS 85


>UNIPROTKB|Q14011 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
            [GO:0030371 "translation repressor activity" evidence=ISS]
            [GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
            "response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
            3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=IDA] [GO:0009409 "response to cold"
            evidence=TAS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
            EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
            RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
            PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
            MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
            REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
            DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
            UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
            neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
            InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
            ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
            ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
            Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
        Length = 172

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/73 (39%), Positives = 47/73 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    73 DGRQIRVDQAGKS 85


>UNIPROTKB|F1S6R1 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:CU929580
            Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
        Length = 172

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/73 (39%), Positives = 47/73 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    73 DGRQIRVDQAGKS 85


>UNIPROTKB|I3L5X7 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
            Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
            Uniprot:I3L5X7
        Length = 156

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 30/75 (40%), Positives = 47/75 (62%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             ++F+T ++ L D FS FG ++E  ++ D    RS+G+G++T +  E A  A+  MNG+ L
Sbjct:    13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESL 72

Query:   125 DGRVIFVDNVRPSRR 139
             DGR I VD+   S R
Sbjct:    73 DGRQIRVDHAGKSAR 87


>UNIPROTKB|P60826 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
            ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
            CTD:1153 Uniprot:P60826
        Length = 172

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/73 (39%), Positives = 47/73 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    13 LSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    73 DGRQIRVDQAGKS 85


>UNIPROTKB|Q5RF83 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
            RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
            SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
            Uniprot:Q5RF83
        Length = 172

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/73 (39%), Positives = 47/73 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    73 DGRQIRVDQAGKS 85


>MGI|MGI:893588 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
            stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
            "negative regulation of translation" evidence=IDA] [GO:0030371
            "translation repressor activity" evidence=IDA] [GO:0034063 "stress
            granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
            evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
            EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
            UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
            PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
            Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
            UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
            NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
            GermOnline:ENSMUSG00000045193 Uniprot:P60824
        Length = 172

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/73 (39%), Positives = 47/73 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    13 LSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    73 DGRQIRVDQAGKS 85


>RGD|620756 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
            "nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
            [GO:0017148 "negative regulation of translation" evidence=ISO]
            [GO:0030371 "translation repressor activity" evidence=ISO;ISS]
            [GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
            "positive regulation of translation" evidence=ISO;ISS] [GO:0048255
            "mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
            binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
            HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
            IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
            SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
            Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
            Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
        Length = 172

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/73 (39%), Positives = 47/73 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    13 LSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    73 DGRQIRVDQAGKS 85


>UNIPROTKB|Q9PTX2 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
            "response to cold" evidence=ISS] [GO:0009790 "embryo development"
            evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
            [GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
            "neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
            evidence=IEP] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
            [GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
            SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
        Length = 164

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 30/73 (41%), Positives = 45/73 (61%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T ++ L   FS++GQ+ E  ++ D    RS+G+G+VT    E+A+ A+  MNGK +
Sbjct:    13 LSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTV 72

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    73 DGRQIRVDQAGKS 85


>MGI|MGI:1099460 [details] [associations]
            symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
            evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
            [GO:0006950 "response to stress" evidence=IEA] [GO:0009409
            "response to cold" evidence=IDA] [GO:0015934 "large ribosomal
            subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
            [GO:0043023 "ribosomal large subunit binding" evidence=IPI]
            [GO:0045727 "positive regulation of translation" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
            HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
            GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
            EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
            RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
            ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
            PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
            PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
            Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
            NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
            GermOnline:ENSMUSG00000031167 Uniprot:O89086
        Length = 153

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 30/75 (40%), Positives = 47/75 (62%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             ++F+T ++ L D FS FG ++E  ++ D    RS+G+G++T +  E A  A+  MNG+ L
Sbjct:    13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72

Query:   125 DGRVIFVDNVRPSRR 139
             DGR I VD+   S R
Sbjct:    73 DGRQIRVDHAGKSAR 87


>UNIPROTKB|G3V6P6 [details] [associations]
            symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
            "translation" evidence=IEA] [GO:0009409 "response to cold"
            evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
            subunit binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
            NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
            Uniprot:G3V6P6
        Length = 156

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 30/75 (40%), Positives = 47/75 (62%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             ++F+T ++ L D FS FG ++E  ++ D    RS+G+G++T +  E A  A+  MNG+ L
Sbjct:    13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72

Query:   125 DGRVIFVDNVRPSRR 139
             DGR I VD+   S R
Sbjct:    73 DGRQIRVDHAGKSAR 87


>ASPGD|ASPL0000040642 [details] [associations]
            symbol:AN2989 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
            GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
            ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
            Uniprot:C8VIY5
        Length = 128

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 30/77 (38%), Positives = 50/77 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +++ TT ++L + FS++G + EA ++ D   NRS+G+G+V  ++E EA  A+  MN +  
Sbjct:     9 LAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAMNNQEF 68

Query:   125 DGRVIFVDNV--RPSRR 139
             DGR+I VD    RP+ R
Sbjct:    69 DGRIIRVDKASERPAAR 85


>UNIPROTKB|F6RBQ9 [details] [associations]
            symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
            OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
            Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
        Length = 160

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 30/75 (40%), Positives = 46/75 (61%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             ++F+T +  L D FS FG ++E  ++ D    RS+G+G++T +  E A  A+  MNG+ L
Sbjct:    13 LNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESL 72

Query:   125 DGRVIFVDNVRPSRR 139
             DGR I VD+   S R
Sbjct:    73 DGRQIRVDHAGKSAR 87


>UNIPROTKB|P98179 [details] [associations]
            symbol:RBM3 "Putative RNA-binding protein 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
            evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
            "dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
            evidence=ISS] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
            "large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
            processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
            GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
            GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
            RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
            SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
            PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
            PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
            Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
            CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
            MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
            KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
            NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
            Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
        Length = 157

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 30/75 (40%), Positives = 47/75 (62%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             ++F+T ++ L D FS FG ++E  ++ D    RS+G+G++T +  E A  A+  MNG+ L
Sbjct:    13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESL 72

Query:   125 DGRVIFVDNVRPSRR 139
             DGR I VD+   S R
Sbjct:    73 DGRQIRVDHAGKSAR 87


>TAIR|locus:2136298 [details] [associations]
            symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0009651 "response to salt
            stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
            [GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
            "response to abscisic acid stimulus" evidence=IDA] [GO:0005829
            "cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
            [GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
            [GO:0000380 "alternative mRNA splicing, via spliceosome"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
            GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
            GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
            EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
            HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
            EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
            IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
            ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
            STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
            EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
            TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
            Uniprot:Q03251
        Length = 169

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 33/78 (42%), Positives = 49/78 (62%)

Query:    60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
             +RC    ++++T  E L   FSQFG V ++ II D    RS+G+G+VT   E+  + A+ 
Sbjct:     6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65

Query:   118 DMNGKLLDGRVIFVDNVR 135
             +MNGK LDGRVI V+  +
Sbjct:    66 EMNGKELDGRVITVNEAQ 83


>TAIR|locus:2076096 [details] [associations]
            symbol:GRP4 "glycine-rich RNA-binding protein 4"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
            to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
            cell wall organization" evidence=RCA] [GO:0042545 "cell wall
            modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
            eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
            ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
            IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
            UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
            PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
            EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
            GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
            PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
        Length = 136

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 31/68 (45%), Positives = 46/68 (67%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S+ T    L  AF+ FG+VTEAT+I D    RS+G+G+V+ S E+ A  A+ +M+GK L
Sbjct:    42 LSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKEL 101

Query:   125 DGRVIFVD 132
             +GR I V+
Sbjct:   102 NGRQIRVN 109


>UNIPROTKB|B4E2X2 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
            UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
            SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
            Uniprot:B4E2X2
        Length = 263

 Score = 153 (58.9 bits), Expect = 7.5e-11, P = 7.5e-11
 Identities = 28/68 (41%), Positives = 46/68 (67%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query:   125 DGRVIFVD 132
             DGR I VD
Sbjct:    73 DGRQIRVD 80


>UNIPROTKB|D6W5Y5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
            UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
            HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
            PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
            Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
            Bgee:D6W5Y5 Uniprot:D6W5Y5
        Length = 297

 Score = 154 (59.3 bits), Expect = 9.3e-11, P = 9.3e-11
 Identities = 29/73 (39%), Positives = 47/73 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    73 DGRQIRVDQAGKS 85


>TAIR|locus:2088756 [details] [associations]
            symbol:AT3G20930 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0000023 "maltose
            metabolic process" evidence=RCA] [GO:0010027 "thylakoid membrane
            organization" evidence=RCA] [GO:0019252 "starch biosynthetic
            process" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HSSP:Q9V535 eggNOG:COG0724 EMBL:AY099828
            EMBL:AY084565 EMBL:BT002195 IPI:IPI00537313 RefSeq:NP_566672.1
            UniGene:At.43817 ProteinModelPortal:Q8L440 SMR:Q8L440 PRIDE:Q8L440
            EnsemblPlants:AT3G20930.1 GeneID:821642 KEGG:ath:AT3G20930
            TAIR:At3g20930 InParanoid:Q8L440 OMA:KAQMVDH PhylomeDB:Q8L440
            ProtClustDB:CLSN2688611 ArrayExpress:Q8L440 Genevestigator:Q8L440
            Uniprot:Q8L440
        Length = 374

 Score = 156 (60.0 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 35/83 (42%), Positives = 52/83 (62%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF T+++ L  AF  FG++ E  IIMD    RSKGY ++  +TEE A  AL +MNGK++
Sbjct:   289 LSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKII 348

Query:   125 DGRVIFVD--NVRPSRRYNTDAS 145
             +G +I VD    +P R+  +  S
Sbjct:   349 NGWMIVVDVAKTKPFRQNRSQPS 371


>UNIPROTKB|O93235 [details] [associations]
            symbol:cirbp-a "Cold-inducible RNA-binding protein A"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
            "response to cold" evidence=IEP] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
            "cell migration" evidence=IMP] [GO:0017148 "negative regulation of
            translation" evidence=ISS] [GO:0019899 "enzyme binding"
            evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
            "translation repressor activity" evidence=ISS] [GO:0034063 "stress
            granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
            translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
            evidence=ISS] [GO:0048793 "pronephros development"
            evidence=IEP;IMP] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
            field specification" evidence=IMP] [GO:0005840 "ribosome"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
            GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
            GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
            EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
            ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
            CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
            GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
        Length = 166

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 27/73 (36%), Positives = 48/73 (65%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             ++F T ++ L  AF+++G+++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK +
Sbjct:    12 LNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSV 71

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD    S
Sbjct:    72 DGRQIRVDQAGKS 84


>RGD|620145 [details] [associations]
            symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
            evidence=ISO] [GO:0006417 "regulation of translation"
            evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
            [GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
            ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
            evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
            subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
            translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
            eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
            EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
            RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
            MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
            KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
            Genevestigator:Q925G0 Uniprot:Q925G0
        Length = 155

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 29/75 (38%), Positives = 46/75 (61%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             ++F+T ++ L D FS FG ++E  ++ D    RS+G+G++T +  E A   +  MNG+ L
Sbjct:    13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESL 72

Query:   125 DGRVIFVDNVRPSRR 139
             DGR I VD+   S R
Sbjct:    73 DGRQIRVDHAGKSAR 87


>TAIR|locus:2079276 [details] [associations]
            symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
            acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
            GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
            GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
            UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
            EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
            RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
            IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
            GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
            OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
            Genevestigator:Q9LIN3 Uniprot:Q9LIN3
        Length = 245

 Score = 149 (57.5 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 28/79 (35%), Positives = 49/79 (62%)

Query:    60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
             +RC    ++++T+   L DAF ++G + EA +++D    RS+G+G++T   ++   +A+ 
Sbjct:     7 YRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIA 66

Query:   118 DMNGKLLDGRVIFVDNVRP 136
              MNG  LDGR I VD  +P
Sbjct:    67 AMNGMDLDGRTITVDKAQP 85


>UNIPROTKB|E2R771 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
            Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
            Uniprot:E2R771
        Length = 162

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 29/75 (38%), Positives = 46/75 (61%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             ++F+T ++ L D F  FG ++E  ++ D    RS+G+G++T +  E A  A+  MNG+ L
Sbjct:    13 LNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAMNGESL 72

Query:   125 DGRVIFVDNVRPSRR 139
             DGR I VD+   S R
Sbjct:    73 DGRQIRVDHAGKSAR 87


>TAIR|locus:2119797 [details] [associations]
            symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
            EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
            UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
            EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
            TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
            PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
            Uniprot:Q67XI5
        Length = 152

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 25/76 (32%), Positives = 50/76 (65%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             ++ FST+++ L   FS FG++ E  +I D    RSKGY ++  +++++A  A+  M+ ++
Sbjct:    46 NLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRM 105

Query:   124 LDGRVIFVDNVRPSRR 139
              +GR+I++D  +P +R
Sbjct:   106 YNGRMIYIDIAKPGKR 121


>UNIPROTKB|E2R228 [details] [associations]
            symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
            Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
        Length = 149

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 28/69 (40%), Positives = 44/69 (63%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             ++F+T ++ L D FS FG ++E  ++ D    RS+G+ ++T +  E A  A+  MNGK L
Sbjct:    13 LNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPMNGKSL 72

Query:   125 DGRVIFVDN 133
             DGR I VD+
Sbjct:    73 DGRQIRVDH 81


>UNIPROTKB|I3LQ36 [details] [associations]
            symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:CU210877
            Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
        Length = 161

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 29/75 (38%), Positives = 45/75 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             ++F+T ++ L D FS FG + E  ++ D    RS+G+G++T +  E A  A+   NG+ L
Sbjct:    13 LNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRATNGESL 72

Query:   125 DGRVIFVDNVRPSRR 139
             DGR I VD+   S R
Sbjct:    73 DGRQIHVDHAGKSAR 87


>TAIR|locus:2179624 [details] [associations]
            symbol:AT5G19030 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002688 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00544212 RefSeq:NP_197404.2
            UniGene:At.31343 ProteinModelPortal:F4JZK9 SMR:F4JZK9
            EnsemblPlants:AT5G19030.1 GeneID:832022 KEGG:ath:AT5G19030
            OMA:RTISCVA PhylomeDB:F4JZK9 Uniprot:F4JZK9
        Length = 172

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 35/76 (46%), Positives = 46/76 (60%)

Query:    66 SFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD 125
             S S ++  L   FS+FGQVT   II +    +S GYGYV  +++E+AQ A+  MNGK  D
Sbjct:    85 SDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFD 144

Query:   126 GRVIFVDNVRP--SRR 139
             GR I V   +P  SRR
Sbjct:   145 GRFILVKFGQPGLSRR 160


>UNIPROTKB|Q43472 [details] [associations]
            symbol:blt801 "Glycine-rich RNA-binding protein blt801"
            species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
            binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
            to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
            EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
            Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
        Length = 161

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 32/82 (39%), Positives = 54/82 (65%)

Query:    60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
             +RC    + ++T  + L +AFS++G V ++ II D    RS+G+G+VT +++E  ++A+ 
Sbjct:     6 YRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIE 65

Query:   118 DMNGKLLDGRVIFVDNVRPSRR 139
              MNG+ LDGR I V+  + SRR
Sbjct:    66 AMNGQDLDGRNITVNEAQ-SRR 86


>UNIPROTKB|Q60A61 [details] [associations]
            symbol:MCA1010 "RNA-binding protein" species:243233
            "Methylococcus capsulatus str. Bath" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
            GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
            ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
            PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
        Length = 95

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 26/66 (39%), Positives = 41/66 (62%)

Query:    74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
             L   F+ +G V  A ++MD    RS+G+G+V   +++EAQ A+  +NGK +DGR + V+ 
Sbjct:    19 LERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGLNGKEMDGRNLMVNE 78

Query:   134 VRPSRR 139
              RP  R
Sbjct:    79 ARPPER 84


>UNIPROTKB|E1BWJ7 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
            EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
            RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
            Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
            OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
        Length = 632

 Score = 153 (58.9 bits), Expect = 5.7e-10, P = 5.7e-10
 Identities = 33/83 (39%), Positives = 50/83 (60%)

Query:    74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
             L + FS+FG+     ++MD    RSKG+G+V     EEAQKA+ DMNGK ++GR+++V  
Sbjct:   207 LREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVG- 264

Query:   134 VRPSRRYNTDASLARQPAQSPEE 156
              R  +R    + L R+  Q  +E
Sbjct:   265 -RAQKRLERQSELKRKFEQMKQE 286

 Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 27/72 (37%), Positives = 43/72 (59%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N S+G+G+V   T+E A +A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSRGHGFVHFETQEAATRAIQTMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV + + SR+
Sbjct:   167 KVFVGHFK-SRK 177

 Score = 116 (45.9 bits), Expect = 5.4e-06, P = 5.4e-06
 Identities = 28/81 (34%), Positives = 45/81 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS +G +T A ++ + G   SKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 ERLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERKAILTNQYMQ 384


>TAIR|locus:2119505 [details] [associations]
            symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
            UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
            ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
            EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
            TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
            Genevestigator:Q6ID29 Uniprot:Q6ID29
        Length = 87

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 29/68 (42%), Positives = 48/68 (70%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             ++S +TT +ML +AFS +G V +A ++ D   +RS+G+G+VT S+  EA+ A+  M+GK 
Sbjct:     9 NLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKE 68

Query:   124 LDGRVIFV 131
             L+GR + V
Sbjct:    69 LNGRRVSV 76


>UNIPROTKB|Q74DJ2 [details] [associations]
            symbol:GSU1324 "RNA-binding protein" species:243231
            "Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
            HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
            GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
            ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
            Uniprot:Q74DJ2
        Length = 107

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 35/86 (40%), Positives = 47/86 (54%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S+  T++ L   FS  G VT   II D    RSKG GYV   TEEEA++A+  ++G LL
Sbjct:    10 MSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALL 69

Query:   125 DGRVIFVDNVRPSRRYNTDASLARQP 150
               RVI V   RP ++    A    +P
Sbjct:    70 RNRVITVSVARPQKQATRPAPRRGKP 95


>TIGR_CMR|GSU_1324 [details] [associations]
            symbol:GSU_1324 "RNA-binding protein" species:243231
            "Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
            HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
            GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
            ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
            Uniprot:Q74DJ2
        Length = 107

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 35/86 (40%), Positives = 47/86 (54%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S+  T++ L   FS  G VT   II D    RSKG GYV   TEEEA++A+  ++G LL
Sbjct:    10 MSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALL 69

Query:   125 DGRVIFVDNVRPSRRYNTDASLARQP 150
               RVI V   RP ++    A    +P
Sbjct:    70 RNRVITVSVARPQKQATRPAPRRGKP 95


>FB|FBgn0031883 [details] [associations]
            symbol:CG11266 species:7227 "Drosophila melanogaster"
            [GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
            splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
            GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
            TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
            KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
            GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
            RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
            STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
            UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
        Length = 594

 Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 32/79 (40%), Positives = 47/79 (59%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+ F+ T++ML   F  FG++    +IMD    RSKGYG++T    ++A+KAL  +NG  
Sbjct:   341 SLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFE 400

Query:   124 LDGRVIFVDNVRPSRRYNT 142
             L GR++ V NV      NT
Sbjct:   401 LAGRLMKVGNVTERLDMNT 419


>TAIR|locus:2168133 [details] [associations]
            symbol:AT5G59860 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00539298
            RefSeq:NP_200794.1 UniGene:At.66722 ProteinModelPortal:F4JXD2
            SMR:F4JXD2 EnsemblPlants:AT5G59860.1 GeneID:836108
            KEGG:ath:AT5G59860 Uniprot:F4JXD2
        Length = 157

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 34/97 (35%), Positives = 56/97 (57%)

Query:    44 VRPSSDLIMQ--LVNVSFWRCIS---VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRS 98
             +RP S +  +  L+      C+S   +S  TT + L   F+ F     A +I D    R 
Sbjct:    52 IRPRSSISKRRRLIGGKTLTCVSNSGLSAYTTDQSLRQLFAPF-----ARLIKDQQTQRP 106

Query:    99 KGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135
             KG+G++T  +E++AQKAL  +NGK+++GR+IFV+  +
Sbjct:   107 KGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAK 143


>UNIPROTKB|E1P5S2 [details] [associations]
            symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
            [GO:0015630 "microtubule cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
            UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
            SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
        Length = 373

 Score = 145 (56.1 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 38/92 (41%), Positives = 53/92 (57%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+ F+ T++ML   F  FG++    ++MD    RSKGYG++T S  E A+KAL  +NG  
Sbjct:    99 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 158

Query:   124 LDGRVIFVDNVRPSRRYNTDASLARQPAQSPE 155
             L GR + V +V  + R  TDAS A     S E
Sbjct:   159 LAGRPMKVGHV--TER--TDASSASSFLDSDE 186


>TAIR|locus:2119495 [details] [associations]
            symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
            evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
            evidence=IDA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
            "RNA binding transcription antitermination factor activity"
            evidence=IDA] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
            [GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
            "seed germination" evidence=IMP] [GO:0031564 "transcription
            antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
            [GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
            GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
            eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
            EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
            EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
            RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
            ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
            PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
            GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
            InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
            Genevestigator:Q9SVM8 Uniprot:Q9SVM8
        Length = 158

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 32/75 (42%), Positives = 47/75 (62%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S+ T    L DAF+ FG V +A +I+D    RS+G+G+V  + E  A  A+ +M+GK L
Sbjct:    42 LSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL 101

Query:   125 DGRVIFVD--NVRPS 137
             +GR I V+  N RPS
Sbjct:   102 NGRHIRVNPANDRPS 116


>UNIPROTKB|G3XAC6 [details] [associations]
            symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
            isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
            UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
            ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
            ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
        Length = 423

 Score = 145 (56.1 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 38/92 (41%), Positives = 53/92 (57%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+ F+ T++ML   F  FG++    ++MD    RSKGYG++T S  E A+KAL  +NG  
Sbjct:   256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315

Query:   124 LDGRVIFVDNVRPSRRYNTDASLARQPAQSPE 155
             L GR + V +V  + R  TDAS A     S E
Sbjct:   316 LAGRPMKVGHV--TER--TDASSASSFLDSDE 343


>UNIPROTKB|H0YCC8 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
            Ensembl:ENST00000474378 Uniprot:H0YCC8
        Length = 197

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 29/78 (37%), Positives = 46/78 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + FSQFG+     ++ D    +SKG+G+V+    E+A KA+ +MNGK + G++IFV
Sbjct:   118 ESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 176

Query:   132 DNVRPSRRYNTDASLARQ 149
                R  ++    A L R+
Sbjct:   177 G--RAQKKVERQAELKRK 192


>UNIPROTKB|Q83CD7 [details] [associations]
            symbol:CBU_1183 "Glycine-rich RNA-binding protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 29/72 (40%), Positives = 44/72 (61%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+S+  T + L   F Q+G++ EA +IMD    RSKG+ ++T  T++ AQ+A+   NG  
Sbjct:    24 SLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGID 83

Query:   124 LDGRVIFVDNVR 135
             L GR I V+  R
Sbjct:    84 LQGRKIRVNIAR 95


>TIGR_CMR|CBU_1183 [details] [associations]
            symbol:CBU_1183 "nucleic acid binding domain protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 29/72 (40%), Positives = 44/72 (61%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+S+  T + L   F Q+G++ EA +IMD    RSKG+ ++T  T++ AQ+A+   NG  
Sbjct:    24 SLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGID 83

Query:   124 LDGRVIFVDNVR 135
             L GR I V+  R
Sbjct:    84 LQGRKIRVNIAR 95


>RGD|1310071 [details] [associations]
            symbol:Rbm39 "RNA binding motif protein 39" species:10116
            "Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
            "centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
            evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
            GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
            HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
            KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
            KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
            RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
            GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
            NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
        Length = 524

 Score = 145 (56.1 bits), Expect = 3.1e-09, P = 3.1e-09
 Identities = 38/92 (41%), Positives = 53/92 (57%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+ F+ T++ML   F  FG++    ++MD    RSKGYG++T S  E A+KAL  +NG  
Sbjct:   256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315

Query:   124 LDGRVIFVDNVRPSRRYNTDASLARQPAQSPE 155
             L GR + V +V  + R  TDAS A     S E
Sbjct:   316 LAGRPMKVGHV--TER--TDASSASSFLDSDE 343


>UNIPROTKB|F6QIA5 [details] [associations]
            symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
            Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
        Length = 525

 Score = 145 (56.1 bits), Expect = 3.1e-09, P = 3.1e-09
 Identities = 38/92 (41%), Positives = 53/92 (57%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+ F+ T++ML   F  FG++    ++MD    RSKGYG++T S  E A+KAL  +NG  
Sbjct:   256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315

Query:   124 LDGRVIFVDNVRPSRRYNTDASLARQPAQSPE 155
             L GR + V +V  + R  TDAS A     S E
Sbjct:   316 LAGRPMKVGHV--TER--TDASSASSFLDSDE 343


>UNIPROTKB|F2Z5I2 [details] [associations]
            symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 EMBL:CU210870
            Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
        Length = 525

 Score = 145 (56.1 bits), Expect = 3.1e-09, P = 3.1e-09
 Identities = 38/92 (41%), Positives = 53/92 (57%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+ F+ T++ML   F  FG++    ++MD    RSKGYG++T S  E A+KAL  +NG  
Sbjct:   256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315

Query:   124 LDGRVIFVDNVRPSRRYNTDASLARQPAQSPE 155
             L GR + V +V  + R  TDAS A     S E
Sbjct:   316 LAGRPMKVGHV--TER--TDASSASSFLDSDE 343


>UNIPROTKB|E1BRU3 [details] [associations]
            symbol:LOC100858247 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
            OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
            IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
        Length = 529

 Score = 145 (56.1 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 38/92 (41%), Positives = 53/92 (57%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+ F+ T++ML   F  FG++    ++MD    RSKGYG++T S  E A+KAL  +NG  
Sbjct:   256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315

Query:   124 LDGRVIFVDNVRPSRRYNTDASLARQPAQSPE 155
             L GR + V +V  + R  TDAS A     S E
Sbjct:   316 LAGRPMKVGHV--TER--TDASSASSFLDSDE 343


>UNIPROTKB|E2R4L0 [details] [associations]
            symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
            CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
            EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
            SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
            KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
        Length = 530

 Score = 145 (56.1 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 38/92 (41%), Positives = 53/92 (57%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+ F+ T++ML   F  FG++    ++MD    RSKGYG++T S  E A+KAL  +NG  
Sbjct:   256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315

Query:   124 LDGRVIFVDNVRPSRRYNTDASLARQPAQSPE 155
             L GR + V +V  + R  TDAS A     S E
Sbjct:   316 LAGRPMKVGHV--TER--TDASSASSFLDSDE 343


>UNIPROTKB|Q14498 [details] [associations]
            symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
            "centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
            GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
            eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
            EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
            EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
            PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
            RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
            PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
            MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
            PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
            Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
            KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
            GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
            neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
            InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
            PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
            GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
            CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
            Uniprot:Q14498
        Length = 530

 Score = 145 (56.1 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 38/92 (41%), Positives = 53/92 (57%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+ F+ T++ML   F  FG++    ++MD    RSKGYG++T S  E A+KAL  +NG  
Sbjct:   256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315

Query:   124 LDGRVIFVDNVRPSRRYNTDASLARQPAQSPE 155
             L GR + V +V  + R  TDAS A     S E
Sbjct:   316 LAGRPMKVGHV--TER--TDASSASSFLDSDE 343


>MGI|MGI:2157953 [details] [associations]
            symbol:Rbm39 "RNA binding motif protein 39" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
            "transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
            DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
            GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
            EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
            EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
            HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
            ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
            EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
            IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
            UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
            PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
            STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
            Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
            Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
            GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
            EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
            CleanEx:MM_RBM39 Genevestigator:Q8VH51
            GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
        Length = 530

 Score = 145 (56.1 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 38/92 (41%), Positives = 53/92 (57%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+ F+ T++ML   F  FG++    ++MD    RSKGYG++T S  E A+KAL  +NG  
Sbjct:   256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315

Query:   124 LDGRVIFVDNVRPSRRYNTDASLARQPAQSPE 155
             L GR + V +V  + R  TDAS A     S E
Sbjct:   316 LAGRPMKVGHV--TER--TDASSASSFLDSDE 343


>UNIPROTKB|F1MA64 [details] [associations]
            symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
            KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
            IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
            SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
            KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
        Length = 530

 Score = 145 (56.1 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 38/92 (41%), Positives = 53/92 (57%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+ F+ T++ML   F  FG++    ++MD    RSKGYG++T S  E A+KAL  +NG  
Sbjct:   256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315

Query:   124 LDGRVIFVDNVRPSRRYNTDASLARQPAQSPE 155
             L GR + V +V  + R  TDAS A     S E
Sbjct:   316 LAGRPMKVGHV--TER--TDASSASSFLDSDE 343


>UNIPROTKB|G4MY43 [details] [associations]
            symbol:MGG_01268 "Nuclear localization sequence binding
            protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
            ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
            KEGG:mgr:MGG_01268 Uniprot:G4MY43
        Length = 486

 Score = 144 (55.7 bits), Expect = 3.5e-09, P = 3.5e-09
 Identities = 35/85 (41%), Positives = 48/85 (56%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             ++S++    MLA+ F   G VT A +I D    RSKG+GYV  +T EEA+KA  +  G  
Sbjct:   245 NLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEKQGAF 304

Query:   124 LDGRVIFVDNVRPSRRYNTDASLAR 148
             +DGR I VD        + DA+ AR
Sbjct:   305 IDGREIKVDFSTGKATNSNDAAGAR 329


>UNIPROTKB|I3LH22 [details] [associations]
            symbol:LOC100514264 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:CU915617
            Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
        Length = 161

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 27/73 (36%), Positives = 43/73 (58%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             ++F++ K+ L D  S F  ++E  I+ D    RS+G+G++T +  E A   +  MNG+ L
Sbjct:    13 LNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASNVMRAMNGESL 72

Query:   125 DGRVIFVDNVRPS 137
             DGR I VD+   S
Sbjct:    73 DGRQIHVDHAGKS 85


>UNIPROTKB|H3BPI5 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
            Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
        Length = 255

 Score = 137 (53.3 bits), Expect = 4.6e-09, P = 4.6e-09
 Identities = 32/87 (36%), Positives = 48/87 (55%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D  S FG +    ++ D  +N SKGYG+V   T E A++A+  MNG LL+GR
Sbjct:   109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166

Query:   128 VIFVDNVRPSRRYNTDASLARQPAQSP 154
              +FV   + SR+   +A L  +  + P
Sbjct:   167 KVFVGQFK-SRK-EREAELGARAKEFP 191

 Score = 104 (41.7 bits), Expect = 0.00038, P = 0.00038
 Identities = 21/51 (41%), Positives = 31/51 (60%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGK 122
             E L D F +FG      ++ D    +SKG+G+V+    E+AQKA+ +MNGK
Sbjct:   205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGK 254


>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
            symbol:rbm39a "RNA binding motif protein 39a"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
            HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
            KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
            GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
            IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
            Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
            KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
        Length = 523

 Score = 143 (55.4 bits), Expect = 5.1e-09, P = 5.1e-09
 Identities = 36/84 (42%), Positives = 51/84 (60%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+ F+ T++ML   F  FG++    ++MD    RSKGYG++T S  E A+KAL  +NG  
Sbjct:   252 SLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFE 311

Query:   124 LDGRVIFVDNVRPSRRYNTDASLA 147
             L GR + V +V  + R  TDAS A
Sbjct:   312 LAGRPMKVGHV--TER--TDASTA 331


>UNIPROTKB|Q6GR16 [details] [associations]
            symbol:epabp-b "Embryonic polyadenylate-binding protein B"
            species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
            "eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
            "chordate embryonic development" evidence=ISS] [GO:0043621 "protein
            self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
            RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
            SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
            Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
        Length = 629

 Score = 144 (55.7 bits), Expect = 5.3e-09, P = 5.3e-09
 Identities = 31/83 (37%), Positives = 47/83 (56%)

Query:    74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
             L + FS FG      ++MD    RS+G+G+V     EEAQKA+ +MNGK ++GR+++V  
Sbjct:   207 LKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVG- 264

Query:   134 VRPSRRYNTDASLARQPAQSPEE 156
              R  +R      L R+  Q  +E
Sbjct:   265 -RAQKRIERQGELKRKFEQIKQE 286

 Score = 123 (48.4 bits), Expect = 9.5e-07, P = 9.5e-07
 Identities = 28/72 (38%), Positives = 42/72 (58%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +  S+GYG+V   T+E A +A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGDILSCKVVCD--EYGSRGYGFVHFETQEAANRAIQTMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV + + SRR
Sbjct:   167 KVFVGHFK-SRR 177

 Score = 109 (43.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 26/81 (32%), Positives = 44/81 (54%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             + L   FS +G +T   ++ + G   SKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 DRLRKEFSPYGTITSTKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERKAILTNQYMQ 384


>UNIPROTKB|Q5JQF3 [details] [associations]
            symbol:PABPC5 "Polyadenylate-binding protein 5"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
            IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
            HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
        Length = 218

 Score = 133 (51.9 bits), Expect = 6.6e-09, P = 6.6e-09
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + F ++G      +I D    +SKG+G+V   T E AQKA++D++GK +DG+V++V
Sbjct:    49 EKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 107

Query:   132 DNVRPSRRYNTDASLARQ 149
                R  ++    A L R+
Sbjct:   108 G--RAQKKIERLAELRRR 123

 Score = 119 (46.9 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 25/68 (36%), Positives = 43/68 (63%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + FS FG ++ A ++M++G+   KG+G V  S+ EEA KA+ +MNG+++  + + V
Sbjct:   152 EKLKEEFSSFGSISRAKVMMEVGQG--KGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 209

Query:   132 DNVRPSRR 139
                +  RR
Sbjct:   210 TLGQARRR 217


>UNIPROTKB|Q98SP8 [details] [associations]
            symbol:epabp-a "Embryonic polyadenylate-binding protein A"
            species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
            initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
            embryonic development" evidence=IEP] [GO:0043621 "protein
            self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
            HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
            RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
            SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
            Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
        Length = 629

 Score = 143 (55.4 bits), Expect = 6.8e-09, P = 6.8e-09
 Identities = 32/83 (38%), Positives = 48/83 (57%)

Query:    74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
             L + FS FG      ++MD    RS+G+G+V     EEAQKA+ +MNGK ++GR+I+V  
Sbjct:   207 LREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG- 264

Query:   134 VRPSRRYNTDASLARQPAQSPEE 156
              R  +R    + L R+  Q  +E
Sbjct:   265 -RAQKRIERQSELKRKFEQIKQE 286

 Score = 124 (48.7 bits), Expect = 7.4e-07, P = 7.4e-07
 Identities = 28/72 (38%), Positives = 42/72 (58%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  ++ S+GYG+V   T E A +A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--EHGSRGYGFVHFETHEAANRAIQTMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV + + SRR
Sbjct:   167 KVFVGHFK-SRR 177

 Score = 107 (42.7 bits), Expect = 0.00054, P = 0.00054
 Identities = 26/81 (32%), Positives = 44/81 (54%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             + L   F  +G +T A ++ + G   SKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 DRLRKEFLPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERKAILTNQYMQ 384


>UNIPROTKB|G3V5Z6 [details] [associations]
            symbol:RBM23 "Probable RNA-binding protein 23" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
            EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
            ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
            ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
        Length = 189

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 30/80 (37%), Positives = 45/80 (56%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+ F+ T++ML   F  FG++    ++ D    RSKGYG++T S  E A++AL  +NG  
Sbjct:    19 SLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFE 78

Query:   124 LDGRVIFVDNVRPSRRYNTD 143
             L GR + V +V       TD
Sbjct:    79 LAGRPMRVGHVTERLDGGTD 98


>TAIR|locus:2027438 [details] [associations]
            symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
            evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
            "Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
            GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
            EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
            UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
            SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
            EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
            GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
            OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
            Genevestigator:Q9FZ84 Uniprot:Q9FZ84
        Length = 155

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 27/67 (40%), Positives = 42/67 (62%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S ST  E+L +AF  FG++ +A +++D     S+G+G+VT  + E A  A+  M  K L
Sbjct:    43 LSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKEL 102

Query:   125 DGRVIFV 131
             DGR+I V
Sbjct:   103 DGRIIGV 109


>TAIR|locus:2049359 [details] [associations]
            symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
            evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
            to cold" evidence=IGI;IEP] [GO:0009414 "response to water
            deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
            evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
            evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
            evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
            "peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0010119 "regulation of stomatal movement"
            evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
            evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
            "gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
            evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
            [GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
            "Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
            evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
            stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
            spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
            GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
            GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
            GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
            GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
            EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
            EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
            EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
            IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
            UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
            MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
            ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
            KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
            ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
        Length = 176

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 29/78 (37%), Positives = 47/78 (60%)

Query:    60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
             +RC    ++++T    L  AF+Q+G V ++ II D    RS+G+G+VT   E+  + A+ 
Sbjct:     8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67

Query:   118 DMNGKLLDGRVIFVDNVR 135
              MNG+ LDGR I V+  +
Sbjct:    68 GMNGQDLDGRSITVNEAQ 85


>UNIPROTKB|H0YJJ3 [details] [associations]
            symbol:RBM23 "Probable RNA-binding protein 23" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
            EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
            Uniprot:H0YJJ3
        Length = 214

 Score = 132 (51.5 bits), Expect = 8.0e-09, P = 8.0e-09
 Identities = 30/80 (37%), Positives = 45/80 (56%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+ F+ T++ML   F  FG++    ++ D    RSKGYG++T S  E A++AL  +NG  
Sbjct:    44 SLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFE 103

Query:   124 LDGRVIFVDNVRPSRRYNTD 143
             L GR + V +V       TD
Sbjct:   104 LAGRPMRVGHVTERLDGGTD 123


>UNIPROTKB|E2R9I0 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
            EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
            Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
        Length = 631

 Score = 142 (55.0 bits), Expect = 8.7e-09, P = 8.7e-09
 Identities = 32/85 (37%), Positives = 49/85 (57%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + FSQFG+     ++ D    +SKG+G+V+    E+A KA+ +MNGK + G+VIFV
Sbjct:   205 ESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++    A L R+  Q  +E
Sbjct:   264 G--RAQKKVERQAELKRKFEQLKQE 286

 Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++++ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERKAHLTNQYMQ 384

 Score = 127 (49.8 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 29/72 (40%), Positives = 41/72 (56%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGY +V   T+E A KA+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   167 KVFVGRFK-SRK 177


>TAIR|locus:2019622 [details] [associations]
            symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
            "ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0010228 "vegetative to reproductive phase
            transition of meristem" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
            EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
            IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
            ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
            EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
            GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
            ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
        Length = 289

 Score = 136 (52.9 bits), Expect = 8.9e-09, P = 8.9e-09
 Identities = 37/110 (33%), Positives = 66/110 (60%)

Query:    25 LSFSSKPYQVVNYFSLHCIVRPSSDLIMQLVNVSFWRCI--SVSFSTTKEMLADAFSQFG 82
             ++F SK  ++ +  S H  V  SS ++  +  +S  +     +S+ST +  L +AFS++G
Sbjct:     1 MAFLSKVGRLFSQTSSH--VTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYG 58

Query:    83 QVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132
             +V +A II+D    RS+G+ +VT ++ EEA  A+  ++G+ L GR I V+
Sbjct:    59 EVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QLDGQDLHGRRIRVN 107


>UNIPROTKB|H0Y5F5 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
            Ensembl:ENST00000421687 Uniprot:H0Y5F5
        Length = 550

 Score = 141 (54.7 bits), Expect = 9.1e-09, P = 9.1e-09
 Identities = 31/85 (36%), Positives = 49/85 (57%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + FSQFG+     ++ D    +SKG+G+V+    E+A KA+ +MNGK + G++IFV
Sbjct:   107 ESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 165

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++    A L R+  Q  +E
Sbjct:   166 G--RAQKKVERQAELKRKFEQLKQE 188

 Score = 131 (51.2 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++++ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   210 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 267

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   268 --ALAQRKEERKAHLTNQYMQ 286

 Score = 127 (49.8 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 29/72 (40%), Positives = 41/72 (56%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGY +V   T+E A KA+  MNG LL+ R
Sbjct:    11 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 68

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:    69 KVFVGRFK-SRK 79


>UNIPROTKB|E2R9I1 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
            InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
            Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
        Length = 700

 Score = 142 (55.0 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 32/85 (37%), Positives = 49/85 (57%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + FSQFG+     ++ D    +SKG+G+V+    E+A KA+ +MNGK + G+VIFV
Sbjct:   245 ESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 303

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++    A L R+  Q  +E
Sbjct:   304 G--RAQKKVERQAELKRKFEQLKQE 326

 Score = 131 (51.2 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++++ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   348 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 405

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   406 --ALAQRKEERKAHLTNQYMQ 424

 Score = 127 (49.8 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 29/72 (40%), Positives = 41/72 (56%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGY +V   T+E A KA+  MNG LL+ R
Sbjct:   149 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 206

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   207 KVFVGRFK-SRK 217


>UNIPROTKB|B1ANR0 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
            EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
            HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
            UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
            SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
        Length = 615

 Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 31/85 (36%), Positives = 49/85 (57%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + FSQFG+     ++ D    +SKG+G+V+    E+A KA+ +MNGK + G++IFV
Sbjct:   205 ESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++    A L R+  Q  +E
Sbjct:   264 G--RAQKKVERQAELKRKFEQLKQE 286

 Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++++ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERKAHLTNQYMQ 384

 Score = 127 (49.8 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 29/72 (40%), Positives = 41/72 (56%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGY +V   T+E A KA+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   167 KVFVGRFK-SRK 177


>UNIPROTKB|H3BNY3 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
            HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
            Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
        Length = 347

 Score = 137 (53.3 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 32/87 (36%), Positives = 48/87 (55%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D  S FG +    ++ D  +N SKGYG+V   T E A++A+  MNG LL+GR
Sbjct:   109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166

Query:   128 VIFVDNVRPSRRYNTDASLARQPAQSP 154
              +FV   + SR+   +A L  +  + P
Sbjct:   167 KVFVGQFK-SRK-EREAELGARAKEFP 191

 Score = 126 (49.4 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 29/85 (34%), Positives = 46/85 (54%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L D F +FG      ++ D    +SKG+G+V+    E+AQKA+ +MNGK L+G+ I+V
Sbjct:   205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++      L R   Q  ++
Sbjct:   264 G--RAQKKVERQTELKRTFEQMKQD 286


>UNIPROTKB|Q6DEY7 [details] [associations]
            symbol:epabp "Embryonic polyadenylate-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
            evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
            evidence=ISS] [GO:0043009 "chordate embryonic development"
            evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
            eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
            ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
            GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
            HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
            Uniprot:Q6DEY7
        Length = 629

 Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 32/83 (38%), Positives = 47/83 (56%)

Query:    74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
             L + FS FG      ++MD    RS+G+G+V     EEAQKA+ +MNGK ++GR+I+V  
Sbjct:   207 LREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG- 264

Query:   134 VRPSRRYNTDASLARQPAQSPEE 156
              R  +R      L R+  Q  +E
Sbjct:   265 -RAQKRIERQGELKRKFEQIKQE 286

 Score = 126 (49.4 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 28/72 (38%), Positives = 43/72 (59%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  ++ S+GYG+V   T+E A +A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--EHGSRGYGFVHFETQEAANRAIQTMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV + + SRR
Sbjct:   167 KVFVGHFK-SRR 177

 Score = 113 (44.8 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 27/81 (33%), Positives = 45/81 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             + L   FS +G +T A ++ + G   SKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 DRLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERKAILTNQYMQ 384


>UNIPROTKB|F1SV06 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
            GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
            EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
        Length = 631

 Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 32/85 (37%), Positives = 49/85 (57%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + FSQFG+     ++ D    +SKG+G+V+    E+A KA+ +MNGK + G+VIFV
Sbjct:   205 ENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++    A L R+  Q  +E
Sbjct:   264 G--RAQKKVERQAELKRKFEQLKQE 286

 Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++++ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERKAHLTNQYMQ 384

 Score = 127 (49.8 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 29/72 (40%), Positives = 41/72 (56%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGY +V   T+E A KA+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   167 KVFVGRFK-SRK 177


>TAIR|locus:2006998 [details] [associations]
            symbol:AT1G33470 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005576 "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 EMBL:AK176398 IPI:IPI00533784
            RefSeq:NP_174613.2 UniGene:At.17522 UniGene:At.67846
            ProteinModelPortal:Q67YS0 SMR:Q67YS0 PaxDb:Q67YS0 PRIDE:Q67YS0
            EnsemblPlants:AT1G33470.1 GeneID:840240 KEGG:ath:AT1G33470
            TAIR:At1g33470 InParanoid:Q67YS0 OMA:GAQYPFY PhylomeDB:Q67YS0
            ProtClustDB:CLSN2680737 ArrayExpress:Q67YS0 Genevestigator:Q67YS0
            Uniprot:Q67YS0
        Length = 245

 Score = 133 (51.9 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 29/63 (46%), Positives = 38/63 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +++ T K  L + F QFG + EA +I D    RSKGYG+VT    E AQKA VD    ++
Sbjct:    14 LAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDP-APVI 72

Query:   125 DGR 127
             DGR
Sbjct:    73 DGR 75


>UNIPROTKB|Q13310 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
            "cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
            binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
            evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
            [GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
            coagulation" evidence=TAS] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
            GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
            GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
            EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
            IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
            RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
            UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
            IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
            DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
            Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
            KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
            GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
            neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
            PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
            NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
            Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
        Length = 644

 Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 31/85 (36%), Positives = 49/85 (57%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + FSQFG+     ++ D    +SKG+G+V+    E+A KA+ +MNGK + G++IFV
Sbjct:   205 ESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++    A L R+  Q  +E
Sbjct:   264 G--RAQKKVERQAELKRKFEQLKQE 286

 Score = 131 (51.2 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++++ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERKAHLTNQYMQ 384

 Score = 127 (49.8 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 29/72 (40%), Positives = 41/72 (56%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGY +V   T+E A KA+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   167 KVFVGRFK-SRK 177


>UNIPROTKB|F1SDR6 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
            EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
        Length = 608

 Score = 140 (54.3 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 30/83 (36%), Positives = 47/83 (56%)

Query:    74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
             L D FSQFG++    ++ D     S+G+G+V     E+AQKA+ DMNGK + GR+++V  
Sbjct:   207 LQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVG- 264

Query:   134 VRPSRRYNTDASLARQPAQSPEE 156
              R  +R      L R+  Q  ++
Sbjct:   265 -RAQKRVERQNELKRRFEQMKQD 286

 Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 28/72 (38%), Positives = 41/72 (56%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D   + S+G+G+V   T E AQ A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHEAAQNAIRTMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV + + SRR
Sbjct:   167 KVFVGHFK-SRR 177

 Score = 114 (45.2 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 28/85 (32%), Positives = 46/85 (54%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   E L   F+ +G +T A ++ + G   SKG+G+V  S+ EEA KA+ +MNG+++  +
Sbjct:   304 SIDDEKLRKEFAPYGMITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361

Query:   128 VIFVDNVRPSRRYNTDASLARQPAQ 152
              ++V      R+    A L  Q  Q
Sbjct:   362 PLYV--ALAQRKEERKAILTNQYIQ 384


>UNIPROTKB|G4MYV6 [details] [associations]
            symbol:MGG_11418 "Nucleic acid-binding protein"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
            RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
            EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
            Uniprot:G4MYV6
        Length = 279

 Score = 134 (52.2 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 32/79 (40%), Positives = 44/79 (55%)

Query:    67 FSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG 126
             F  T E LA+AFSQ+G V +A +  D  +  SKG+G++   T E AQKA  + N     G
Sbjct:    82 FDATNEHLAEAFSQYGNVVDAKVARD-ARGLSKGFGFIYFETPEAAQKACEEANNTFWHG 140

Query:   127 RVIFV-DNVRPSRRYNTDA 144
             R I V   ++ S+  N DA
Sbjct:   141 RRINVAPRIKASKPGNRDA 159


>UNIPROTKB|E2RND1 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
            EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
        Length = 644

 Score = 140 (54.3 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 30/83 (36%), Positives = 49/83 (59%)

Query:    74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
             L D FS+FG++    ++ D     S+G+G+V     EEAQKA++DMNGK + GR+++V  
Sbjct:   207 LQDLFSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVG- 264

Query:   134 VRPSRRYNTDASLARQPAQSPEE 156
              R  +R    + L R+  Q  ++
Sbjct:   265 -RAQKRVERQSELKRRFEQLKQD 286

 Score = 124 (48.7 bits), Expect = 7.6e-07, P = 7.6e-07
 Identities = 28/72 (38%), Positives = 42/72 (58%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D   + S+G+G+V   T E AQ+A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHEAAQQAITTMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV + + SRR
Sbjct:   167 KVFVGHFK-SRR 177

 Score = 118 (46.6 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 30/85 (35%), Positives = 46/85 (54%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   E L   FS +G +T A ++ + G   SKG+G+V  S+ EEA KA+ +MNG++L  +
Sbjct:   304 SIDDEKLRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRILGTK 361

Query:   128 VIFVDNVRPSRRYNTDASLARQPAQ 152
              ++V      R+    A L  Q  Q
Sbjct:   362 PLYV--ALAQRKEERKAILTNQYMQ 384


>UNIPROTKB|A4IFC3 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
            OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
            IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
            Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
            InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
        Length = 645

 Score = 140 (54.3 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 32/85 (37%), Positives = 49/85 (57%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + FSQFG+     ++ D    +SKG+G+V+    E+A KA+ +MNGK + G+VIFV
Sbjct:   205 ENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++    A L R+  Q  +E
Sbjct:   264 G--RAQKKVERQAELKRKFEQLKQE 286

 Score = 131 (51.2 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++++ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERKAHLTNQYMQ 384

 Score = 127 (49.8 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 29/72 (40%), Positives = 41/72 (56%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGY +V   T+E A KA+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   167 KVFVGRFK-SRK 177


>TAIR|locus:2049721 [details] [associations]
            symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
            "response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
            evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
            "response to abscisic acid stimulus" evidence=IEP] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
            response to bacterium" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
            GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
            HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
            EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
            RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
            SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
            PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
            GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
            InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
            ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
            Uniprot:Q9ZUU4
        Length = 289

 Score = 134 (52.2 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 31/78 (39%), Positives = 44/78 (56%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             ++S+      L   FS+ G+V EA +I D    RSKG+G+VT  + +E Q A+  ++G  
Sbjct:   210 NLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGAD 269

Query:   124 LDGRVIFVDNV--RPSRR 139
             LDGR I V     RP RR
Sbjct:   270 LDGRQIRVSEAEARPPRR 287

 Score = 108 (43.1 bits), Expect = 0.00011, P = 0.00011
 Identities = 30/90 (33%), Positives = 41/90 (45%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             ++ F+     LA  F   G V    +I D    RS+G+G+VT S+  E + A    NG  
Sbjct:    97 NLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYE 156

Query:   124 LDGRVIFVDNVRPSRRYNTDASLARQPAQS 153
             LDGR + V N  P      D   +R P  S
Sbjct:   157 LDGRPLRV-NAGPPPPKREDG-FSRGPRSS 184


>UNIPROTKB|K7ELT6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
            Uniprot:K7ELT6
        Length = 135

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 22/59 (37%), Positives = 40/59 (67%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK+
Sbjct:    13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKV 71


>TAIR|locus:2083810 [details] [associations]
            symbol:PSRP2 "plastid-speciﬁc ribosomal protein 2"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
            "photosynthetic electron transport in photosystem I" evidence=RCA]
            [GO:0019288 "isopentenyl diphosphate biosynthetic process,
            mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
            targeting to chloroplast" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
            EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
            RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
            SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
            EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
            KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
            PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
            Genevestigator:Q8VYM4 Uniprot:Q8VYM4
        Length = 253

 Score = 132 (51.5 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 27/65 (41%), Positives = 44/65 (67%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             + TKEML + FS+ G+V  A +    G ++S G+G+VT S+EE+ + A+V +N  LL+G+
Sbjct:   187 TVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQ 246

Query:   128 VIFVD 132
              I V+
Sbjct:   247 KIRVN 251


>UNIPROTKB|E1BNB4 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
            EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
            Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
        Length = 618

 Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 30/86 (34%), Positives = 50/86 (58%)

Query:    71 KEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIF 130
             ++ L D FSQFG++    ++ D     S+G+G+V     EEAQKA+V+MNG+ + GR+++
Sbjct:   204 EQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLY 262

Query:   131 VDNVRPSRRYNTDASLARQPAQSPEE 156
             V   R  +R      L R+  Q  ++
Sbjct:   263 VG--RAQKRVERQNELKRRFEQMKQD 286

 Score = 123 (48.4 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
 Identities = 28/72 (38%), Positives = 42/72 (58%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  ++ S+G+G+V   T E AQ A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSTFGNILSCKVVCD--EHGSRGFGFVHFETHEAAQNAISTMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV + + SRR
Sbjct:   167 KVFVGHFK-SRR 177

 Score = 115 (45.5 bits), Expect = 6.7e-06, P = 6.7e-06
 Identities = 29/85 (34%), Positives = 46/85 (54%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   E L   FS +G +T A ++ + G   SKG+G+V  S+ EEA KA+ +MNG+++  +
Sbjct:   304 SIDDEKLRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361

Query:   128 VIFVDNVRPSRRYNTDASLARQPAQ 152
              ++V      R+    A L  Q  Q
Sbjct:   362 PLYV--ALAQRKEERKAILTNQYMQ 384

 Score = 37 (18.1 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query:   135 RPSRRYNTDASLARQPAQS 153
             RPS  Y   AS+ R  A S
Sbjct:   439 RPSSAYPPGASVVRPAAMS 457


>UNIPROTKB|H0YAP2 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
            Uniprot:H0YAP2
        Length = 131

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 29/85 (34%), Positives = 47/85 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L D F +FG      ++ D    +SKG+G+V+    E+AQKA+ +MNGK L+G+ I+V
Sbjct:     3 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++      L R+  Q  ++
Sbjct:    62 G--RAQKKVERQTELKRKFEQMKQD 84


>UNIPROTKB|K7ELV6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
        Length = 70

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 22/58 (37%), Positives = 39/58 (67%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGK 122
             +SF T ++ L   FS++GQ++E  ++ D    RS+G+G+VT    ++A+ A++ MNGK
Sbjct:    13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 70


>UNIPROTKB|G3XAP0 [details] [associations]
            symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
            HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
            ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
            ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
        Length = 269

 Score = 132 (51.5 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 30/80 (37%), Positives = 45/80 (56%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+ F+ T++ML   F  FG++    ++ D    RSKGYG++T S  E A++AL  +NG  
Sbjct:    99 SLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFE 158

Query:   124 LDGRVIFVDNVRPSRRYNTD 143
             L GR + V +V       TD
Sbjct:   159 LAGRPMRVGHVTERLDGGTD 178


>UNIPROTKB|H0YEU6 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
            Ensembl:ENST00000527718 Uniprot:H0YEU6
        Length = 249

 Score = 131 (51.2 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++++ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:    35 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 92

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:    93 --ALAQRKEERKAHLTNQYMQ 111


>UNIPROTKB|F1N4Q4 [details] [associations]
            symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
            CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
            RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
            Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
            NextBio:20869865 Uniprot:F1N4Q4
        Length = 382

 Score = 135 (52.6 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 28/78 (35%), Positives = 47/78 (60%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             + L + FS++G      +I D    +SKG+G+V   T E AQKA++D++GK +DG+V++V
Sbjct:   213 DKLKELFSEYGPTESVKVIRD-SSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271

Query:   132 DNVRPSRRYNTDASLARQ 149
                R  ++    A L R+
Sbjct:   272 G--RAQKKIERLAELRRR 287

 Score = 114 (45.2 bits), Expect = 8.3e-06, P = 8.3e-06
 Identities = 23/69 (33%), Positives = 44/69 (63%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + FS FG ++ A +++++G+   KG+G +  S+ EEA KA+ +MNG+++  + + V
Sbjct:   316 EKLKEEFSSFGSISRAKVMVEVGQG--KGFGVICFSSFEEATKAVDEMNGRIVGSKPLQV 373

Query:   132 DNVRPSRRY 140
                +  RR+
Sbjct:   374 TLGQARRRW 382


>WB|WBGene00007396 [details] [associations]
            symbol:tiar-3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
            "calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
            membrane" evidence=IEA] [GO:0009792 "embryo development ending in
            birth or egg hatching" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
            RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
            EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
            UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
        Length = 450

 Score = 136 (52.9 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 24/65 (36%), Positives = 42/65 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S   + E+L   F++FG+V+EA +I D+   +SKGYG+V+   ++ A+ A+  MNGK +
Sbjct:   232 LSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWI 291

Query:   125 DGRVI 129
               R +
Sbjct:   292 GKRAV 296


>ASPGD|ASPL0000078272 [details] [associations]
            symbol:AN4330 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
            OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
            ProteinModelPortal:Q5B550 STRING:Q5B550
            EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
            Uniprot:Q5B550
        Length = 724

 Score = 138 (53.6 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 29/76 (38%), Positives = 46/76 (60%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+  S T E LA+ FSQ   +  A +++D    +SKGYG+VT +  E+A+ AL ++NG  
Sbjct:    43 SLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSKGYGFVTFADVEDAKAALEELNGST 102

Query:   124 LDGRVIFVDNVRPSRR 139
              +G+ I V+  +P  R
Sbjct:   103 FEGKKIKVEYAQPRHR 118


>UNIPROTKB|Q9H361 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
            process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
            eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
            EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
            PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
            IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
            PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
            GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
            GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
            PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
            PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
            NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
            Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
        Length = 631

 Score = 137 (53.3 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 32/87 (36%), Positives = 48/87 (55%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D  S FG +    ++ D  +N SKGYG+V   T E A++A+  MNG LL+GR
Sbjct:   109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166

Query:   128 VIFVDNVRPSRRYNTDASLARQPAQSP 154
              +FV   + SR+   +A L  +  + P
Sbjct:   167 KVFVGQFK-SRK-EREAELGARAKEFP 191

 Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 27/60 (45%), Positives = 42/60 (70%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L  AFS FG +T A ++M+ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

 Score = 126 (49.4 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 29/85 (34%), Positives = 46/85 (54%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L D F +FG      ++ D    +SKG+G+V+    E+AQKA+ +MNGK L+G+ I+V
Sbjct:   205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++      L R   Q  ++
Sbjct:   264 G--RAQKKVERQTELKRTFEQMKQD 286


>UNIPROTKB|H0YBQ4 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
            Uniprot:H0YBQ4
        Length = 258

 Score = 130 (50.8 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 31/81 (38%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++M+ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   141 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 198

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   199 --ALAQRKEERQAHLTNQYMQ 217

 Score = 128 (50.1 bits), Expect = 5.1e-08, P = 5.1e-08
 Identities = 29/85 (34%), Positives = 47/85 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L D F +FG      ++ D    +SKG+G+V+    E+AQKA+ +MNGK L+G+ I+V
Sbjct:    38 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 96

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++      L R+  Q  ++
Sbjct:    97 G--RAQKKVERQTELKRKFEQMKQD 119


>RGD|1311201 [details] [associations]
            symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
            IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
            MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
            KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
            NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
        Length = 643

 Score = 137 (53.3 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 30/72 (41%), Positives = 43/72 (59%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGYG+V   T+EEA++A+  MNG  L+ R
Sbjct:   109 SIDSKTLYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEEAERAIEKMNGMFLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SRR
Sbjct:   167 KVFVGRFK-SRR 177

 Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 31/81 (38%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A + M+ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   318 ERLRKEFSPFGTITSAKVTMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 375

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L+ Q  Q
Sbjct:   376 --ALAQRKEERQAHLSNQYMQ 394

 Score = 123 (48.4 bits), Expect = 9.7e-07, P = 9.7e-07
 Identities = 26/72 (36%), Positives = 42/72 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L D FS+FG      ++ D    +SKG+G+V+    E+A+KA+ +MNGK L+G+ I+V
Sbjct:   205 ERLQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYV 263

Query:   132 DNVRPSRRYNTD 143
                +      T+
Sbjct:   264 GRAQKKVERQTE 275


>UNIPROTKB|K7GNR2 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
        Length = 129

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 25/70 (35%), Positives = 43/70 (61%)

Query:    69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             T ++ L   F ++G++ E  ++ D   N+S+G+ +VT  +  +A+ A  DMNGK LDG+ 
Sbjct:    19 TNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKA 78

Query:   129 IFVDNV-RPS 137
             I V+   +PS
Sbjct:    79 IKVEQATKPS 88


>UNIPROTKB|D4AC21 [details] [associations]
            symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
            ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
            ArrayExpress:D4AC21 Uniprot:D4AC21
        Length = 588

 Score = 136 (52.9 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 31/85 (36%), Positives = 48/85 (56%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + FSQFG+     ++ D    +SKG+G+V+    E+A KA+ +MNGK + G+ IFV
Sbjct:   134 ENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 192

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++    A L R+  Q  +E
Sbjct:   193 G--RAQKKVERQAELKRKFEQLKQE 215

 Score = 131 (51.2 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++++ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   237 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 294

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   295 --ALAQRKEERKAHLTNQYMQ 313

 Score = 127 (49.8 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 29/72 (40%), Positives = 41/72 (56%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGY +V   T+E A KA+  MNG LL+ R
Sbjct:    38 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAANKAIEKMNGMLLNDR 95

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:    96 KVFVGRFK-SRK 106


>UNIPROTKB|Q96DU9 [details] [associations]
            symbol:PABPC5 "Polyadenylate-binding protein 5"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
            EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
            PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
            ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
            PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
            DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
            UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
            HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
            PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
            GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
            CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
            Uniprot:Q96DU9
        Length = 382

 Score = 133 (51.9 bits), Expect = 3.6e-08, P = 3.6e-08
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + F ++G      +I D    +SKG+G+V   T E AQKA++D++GK +DG+V++V
Sbjct:   213 EKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271

Query:   132 DNVRPSRRYNTDASLARQ 149
                R  ++    A L R+
Sbjct:   272 G--RAQKKIERLAELRRR 287

 Score = 119 (46.9 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 25/68 (36%), Positives = 43/68 (63%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + FS FG ++ A ++M++G+   KG+G V  S+ EEA KA+ +MNG+++  + + V
Sbjct:   316 EKLKEEFSSFGSISRAKVMMEVGQG--KGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373

Query:   132 DNVRPSRR 139
                +  RR
Sbjct:   374 TLGQARRR 381


>UNIPROTKB|D4AC14 [details] [associations]
            symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
            Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
        Length = 631

 Score = 136 (52.9 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 31/85 (36%), Positives = 48/85 (56%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + FSQFG+     ++ D    +SKG+G+V+    E+A KA+ +MNGK + G+ IFV
Sbjct:   205 ENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++    A L R+  Q  +E
Sbjct:   264 G--RAQKKVERQAELKRKFEQLKQE 286

 Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++++ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERKAHLTNQYMQ 384

 Score = 127 (49.8 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 29/72 (40%), Positives = 41/72 (56%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGY +V   T+E A KA+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAANKAIEKMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   167 KVFVGRFK-SRK 177


>UNIPROTKB|H0YAR2 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
            Uniprot:H0YAR2
        Length = 284

 Score = 130 (50.8 bits), Expect = 4.0e-08, P = 4.0e-08
 Identities = 31/81 (38%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++M+ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   177 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 234

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   235 --ALAQRKEERQAHLTNQYMQ 253

 Score = 109 (43.4 bits), Expect = 7.6e-05, P = 7.6e-05
 Identities = 25/76 (32%), Positives = 42/76 (55%)

Query:    81 FGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSRRY 140
             FG      ++ D    +SKG+G+V+    E+AQKA+ +MNGK L+G+ I+V   R  ++ 
Sbjct:    83 FGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG--RAQKKV 139

Query:   141 NTDASLARQPAQSPEE 156
                  L R+  Q  ++
Sbjct:   140 ERQTELKRKFEQMKQD 155


>UNIPROTKB|G3V9N0 [details] [associations]
            symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
            OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
        Length = 660

 Score = 136 (52.9 bits), Expect = 4.1e-08, P = 4.1e-08
 Identities = 31/85 (36%), Positives = 48/85 (56%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + FSQFG+     ++ D    +SKG+G+V+    E+A KA+ +MNGK + G+ IFV
Sbjct:   205 ENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++    A L R+  Q  +E
Sbjct:   264 G--RAQKKVERQAELKRKFEQLKQE 286

 Score = 131 (51.2 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++++ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERKAHLTNQYMQ 384

 Score = 127 (49.8 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 29/72 (40%), Positives = 41/72 (56%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGY +V   T+E A KA+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAANKAIEKMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   167 KVFVGRFK-SRK 177


>UNIPROTKB|E7ETJ9 [details] [associations]
            symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
            ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
            Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
            Uniprot:E7ETJ9
        Length = 132

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 23/60 (38%), Positives = 40/60 (66%)

Query:    70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
             T E +  AF+ FG++++A ++ D+   +SKGYG+V+   + +A+ A+V M G+ L GR I
Sbjct:    70 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 129


>UNIPROTKB|H0YB86 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523636
            Uniprot:H0YB86
        Length = 165

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 29/75 (38%), Positives = 45/75 (60%)

Query:    78 FSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPS 137
             FS FG +T A ++M+ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V      
Sbjct:     5 FSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV--ALAQ 60

Query:   138 RRYNTDASLARQPAQ 152
             R+    A L  Q  Q
Sbjct:    61 RKEERQAHLTNQYMQ 75


>TAIR|locus:2077427 [details] [associations]
            symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
            EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
            ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
            GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
            OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
            Genevestigator:Q9SFB4 Uniprot:Q9SFB4
        Length = 143

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 28/63 (44%), Positives = 39/63 (61%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S+S  ++ L DAFS FG+V E  I  D G  RS+G+G+V  + E +A  A   M+GK L
Sbjct:    48 LSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGL 107

Query:   125 DGR 127
              GR
Sbjct:   108 LGR 110


>TAIR|locus:2202740 [details] [associations]
            symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
            EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
            PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
            ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
            EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
            TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
            ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
            Uniprot:Q9ZUJ3
        Length = 258

 Score = 128 (50.1 bits), Expect = 5.1e-08, P = 5.1e-08
 Identities = 28/77 (36%), Positives = 47/77 (61%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             ++S++ T E LA AF + G V  A ++ D    RS+GYG+V  S++ E + AL  ++G  
Sbjct:   183 NLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFE 242

Query:   124 LDGRVIFVDNVRPSRRY 140
             L+GR I V N+   +++
Sbjct:   243 LEGRAIRV-NLAQGKKF 258


>TAIR|locus:2171539 [details] [associations]
            symbol:RPS19 "ribosomal protein S19" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003735 "structural
            constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
            "translation" evidence=IEA;NAS] [GO:0015935 "small ribosomal
            subunit" evidence=IEA] [GO:0006354 "DNA-dependent transcription,
            elongation" evidence=RCA] [GO:0005763 "mitochondrial small
            ribosomal subunit" evidence=IDA] InterPro:IPR000504
            InterPro:IPR002222 InterPro:IPR005732 InterPro:IPR012677
            InterPro:IPR020934 InterPro:IPR023575 Pfam:PF00076 Pfam:PF00203
            PRINTS:PR00975 PROSITE:PS00323 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006412
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003735 eggNOG:COG0724
            GO:GO:0005763 EMBL:AB018117 Gene3D:3.30.860.10 HAMAP:MF_00531
            SUPFAM:SSF54570 TIGRFAMs:TIGR01050 KO:K02965 EMBL:X78035
            EMBL:X77989 EMBL:AY045963 EMBL:AY091354 EMBL:Z18203 IPI:IPI00544075
            PIR:S71114 RefSeq:NP_568681.1 UniGene:At.5396
            ProteinModelPortal:P39697 SMR:P39697 STRING:P39697 PaxDb:P39697
            PRIDE:P39697 EnsemblPlants:AT5G47320.1 GeneID:834779
            KEGG:ath:AT5G47320 GeneFarm:3993 TAIR:At5g47320 InParanoid:P39697
            PhylomeDB:P39697 Genevestigator:P39697 GermOnline:AT5G47320
            Uniprot:P39697
        Length = 212

 Score = 125 (49.1 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S  T +  L DAFS F  VTEA ++ +    RS+GYG+V   +E+ A  A+  MNG+ L
Sbjct:    38 LSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQEL 97

Query:   125 DGRVIFVDNVR--PSRRYNTDASL 146
             +G  I V+  +  PS   + D S+
Sbjct:    98 NGFNISVNVAKDWPSLPLSLDESI 121


>UNIPROTKB|I3LPP8 [details] [associations]
            symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
            GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
            Uniprot:I3LPP8
        Length = 423

 Score = 132 (51.5 bits), Expect = 5.6e-08, P = 5.6e-08
 Identities = 29/80 (36%), Positives = 46/80 (57%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+ F+ T++ML   F  FG++    ++ D    RSKGYG++T S  E A++AL  +NG  
Sbjct:   260 SLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFE 319

Query:   124 LDGRVIFVDNVRPSRRYNTD 143
             L GR + + +V      +TD
Sbjct:   320 LAGRPMRIGHVTERLDGSTD 339


>POMBASE|SPAC140.02 [details] [associations]
            symbol:gar2 "nucleolar protein required for rRNA
            processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0005732 "small nucleolar ribonucleoprotein complex"
            evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
            [GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
            "ribosome biogenesis" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
            GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
            GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
            ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
            EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
            KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
            Uniprot:P41891
        Length = 500

 Score = 133 (51.9 bits), Expect = 5.7e-08, P = 5.7e-08
 Identities = 38/98 (38%), Positives = 53/98 (54%)

Query:    43 IVRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYG 102
             I +PS D   +   V   R   +S++   + L   F ++G +  A +IMD    RSKGYG
Sbjct:   252 ITKPSQDS-NETCTVFVGR---LSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYG 307

Query:   103 YVTSSTEEEAQKALVDMNG-KLLDGRVIFVD--NVRPS 137
             YV   T E A KA V  NG K +DGR++ +D  N RP+
Sbjct:   308 YVDFETPEAA-KAAVAANGTKEIDGRMVNLDLSNPRPA 344

 Score = 108 (43.1 bits), Expect = 0.00028, P = 0.00028
 Identities = 26/73 (35%), Positives = 40/73 (54%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             ++SF+ T++ L+ AF   G +    +  D    R KG+GYVT S  + A+K  V+MNG  
Sbjct:   372 NLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKC-VEMNGHF 430

Query:   124 LDGRVIFVDNVRP 136
             + GR   +D   P
Sbjct:   431 IAGRPCRLDFSTP 443


>UNIPROTKB|Q86U06 [details] [associations]
            symbol:RBM23 "Probable RNA-binding protein 23" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
            EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
            EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
            IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
            RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
            UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
            ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
            MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
            PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
            Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
            KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
            UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
            HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
            HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
            ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
            NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
            Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
            Uniprot:Q86U06
        Length = 439

 Score = 132 (51.5 bits), Expect = 5.9e-08, P = 5.9e-08
 Identities = 30/80 (37%), Positives = 45/80 (56%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+ F+ T++ML   F  FG++    ++ D    RSKGYG++T S  E A++AL  +NG  
Sbjct:   269 SLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFE 328

Query:   124 LDGRVIFVDNVRPSRRYNTD 143
             L GR + V +V       TD
Sbjct:   329 LAGRPMRVGHVTERLDGGTD 348


>UNIPROTKB|E2QVA8 [details] [associations]
            symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
            Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
        Length = 440

 Score = 132 (51.5 bits), Expect = 5.9e-08, P = 5.9e-08
 Identities = 30/80 (37%), Positives = 45/80 (56%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+ F+ T++ML   F  FG++    ++ D    RSKGYG++T S  E A++AL  +NG  
Sbjct:   270 SLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFE 329

Query:   124 LDGRVIFVDNVRPSRRYNTD 143
             L GR + V +V       TD
Sbjct:   330 LAGRPMRVGHVTERLDGGTD 349


>ZFIN|ZDB-GENE-050308-1 [details] [associations]
            symbol:pabpc1b "poly A binding protein, cytoplasmic 1
            b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
            EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
            UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
            Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
            InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
        Length = 634

 Score = 134 (52.2 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 32/81 (39%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++MD G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 ERLRKEFSPFGTITSAKVMMDGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERQAHLTNQYMQ 384

 Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 29/72 (40%), Positives = 43/72 (59%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGYG+V   T+E A++A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   167 KVFVGRFK-SRK 177

 Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 25/85 (29%), Positives = 49/85 (57%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             + L D FS++G      ++ D    +S+G+G+V+    E+AQ+A+ +MNGK ++G++I+V
Sbjct:   205 DKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++      L R+  Q  ++
Sbjct:   264 G--RAQKKVERQTELKRKFEQMKQD 286


>TAIR|locus:2159401 [details] [associations]
            symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
            "copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
            to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
            ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
            "regulation of flower development" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0034968 "histone lysine methylation"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
            EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
            HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
            IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
            ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
            PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
            KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
            HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
            ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
        Length = 309

 Score = 129 (50.5 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 23/68 (33%), Positives = 47/68 (69%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +++S  ++ L +AF+++G+V +  +I+D    RS+G+G+VT ++ E A  A+  ++G+ L
Sbjct:    47 MAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDL 106

Query:   125 DGRVIFVD 132
              GRV+ V+
Sbjct:   107 HGRVVKVN 114


>WB|WBGene00015943 [details] [associations]
            symbol:tiar-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
            "morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0010171 "body morphogenesis"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
            GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
            GO:GO:0003676 EMBL:FO080599 HSSP:P11940
            GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
            GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
            NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
            SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
            EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
            OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
        Length = 408

 Score = 131 (51.2 bits), Expect = 6.7e-08, P = 6.7e-08
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S     + L +AF  FG V++A +I D    +SKGYG+V+    EEA++A+  MNG+ L
Sbjct:   142 LSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWL 201

Query:   125 DGRVI 129
               R I
Sbjct:   202 GRRTI 206


>SGD|S000003391 [details] [associations]
            symbol:NSR1 "Nucleolar protein that binds nuclear
            localization sequences" species:4932 "Saccharomyces cerevisiae"
            [GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0006950 "response to stress"
            evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
            GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
            GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
            OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
            EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
            ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
            MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
            EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
            HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
            GermOnline:YGR159C Uniprot:P27476
        Length = 414

 Score = 131 (51.2 bits), Expect = 6.9e-08, P = 6.9e-08
 Identities = 33/92 (35%), Positives = 47/92 (51%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S+S   E L   F   G V  A +I + G +RS+GYGYV    +  A+KA+ +M GK +
Sbjct:   175 LSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEI 234

Query:   125 DGRVIFVDNVRPSRRYNTDASLARQPAQSPEE 156
             DGR I  D        N D   A++   +P E
Sbjct:   235 DGRPINCDMSTSKPAGNNDR--AKKFGDTPSE 264

 Score = 107 (42.7 bits), Expect = 0.00030, P = 0.00030
 Identities = 25/80 (31%), Positives = 44/80 (55%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             ++SF+  ++ + + F++ G+V    I       + KG+GYV  S  E+A+KAL  + G+ 
Sbjct:   273 NLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEY 332

Query:   124 LDGRVIFVDNVRPSRRYNTD 143
             +D R + +D   P  R N D
Sbjct:   333 IDNRPVRLDFSSP--RPNND 350


>RGD|1305015 [details] [associations]
            symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
            species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
            "poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
            binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
            [GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
            ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
            InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
            Uniprot:Q5I0G7
        Length = 415

 Score = 131 (51.2 bits), Expect = 6.9e-08, P = 6.9e-08
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++++ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:    63 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 120

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   121 --ALAQRKEERKAHLTNQYMQ 139


>UNIPROTKB|Q96E39 [details] [associations]
            symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
            eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
            RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
            SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
            PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
            Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
            UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
            neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
            PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
            ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
        Length = 390

 Score = 130 (50.8 bits), Expect = 7.9e-08, P = 7.9e-08
 Identities = 26/70 (37%), Positives = 43/70 (61%)

Query:    69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             T ++ L   F ++G++ E  +I D   N+S+G+ +VT  +  +A+ A  DMNGK LDG+ 
Sbjct:    19 TNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKA 78

Query:   129 IFVDNV-RPS 137
             I V+   +PS
Sbjct:    79 IKVEQATKPS 88


>TAIR|locus:2017779 [details] [associations]
            symbol:AT1G22910 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00523114
            RefSeq:NP_973889.1 UniGene:At.26231 ProteinModelPortal:F4I321
            SMR:F4I321 EnsemblPlants:AT1G22910.3 GeneID:838898
            KEGG:ath:AT1G22910 ArrayExpress:F4I321 Uniprot:F4I321
        Length = 347

 Score = 129 (50.5 bits), Expect = 8.1e-08, P = 8.1e-08
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +++ T KE +   F QFG++ EA +I D    RSKGYG+VT    E A+ A VD    ++
Sbjct:    20 LAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDAT-PVI 78

Query:   125 DGR 127
             DGR
Sbjct:    79 DGR 81


>TAIR|locus:2011726 [details] [associations]
            symbol:AT1G76460 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0048573 "photoperiodism,
            flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 UniGene:At.43912
            UniGene:At.70089 IPI:IPI00542968 RefSeq:NP_565132.2
            UniGene:At.69045 ProteinModelPortal:F4I2E4 SMR:F4I2E4 PRIDE:F4I2E4
            EnsemblPlants:AT1G76460.1 GeneID:843979 KEGG:ath:AT1G76460
            OMA:YGPEYMY Uniprot:F4I2E4
        Length = 285

 Score = 127 (49.8 bits), Expect = 8.6e-08, P = 8.6e-08
 Identities = 33/96 (34%), Positives = 46/96 (47%)

Query:    32 YQVVNYFSLHCIVRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIM 91
             YQ V     H +  P  D     V V       +++ T  E L   F Q+G++ EA +I 
Sbjct:     3 YQPVPGSGFHYLNSPFGDTTFTKVFVG-----GLAWETQSETLRQHFEQYGEILEAVVIA 57

Query:    92 DIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             D    RSKGYG+VT    E A++A  D    ++DGR
Sbjct:    58 DKNTGRSKGYGFVTFRDPEAARRACADPT-PIIDGR 92


>ASPGD|ASPL0000061196 [details] [associations]
            symbol:AN10164 species:162425 "Emericella nidulans"
            [GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
            ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
            Uniprot:C8VTL0
        Length = 477

 Score = 131 (51.2 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 27/65 (41%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S     E+L  AFS FG V+EA ++ D+   RS+GYG+V      +A+KAL  M+G+ L
Sbjct:   189 LSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWL 248

Query:   125 DGRVI 129
               R I
Sbjct:   249 GSRAI 253


>UNIPROTKB|F1NH81 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
            EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
            Uniprot:F1NH81
        Length = 573

 Score = 132 (51.5 bits), Expect = 9.0e-08, P = 9.0e-08
 Identities = 29/72 (40%), Positives = 43/72 (59%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGYG+V   T+E A++A+  MNG LL+ R
Sbjct:    45 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 102

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   103 KVFVGRFK-SRK 113

 Score = 130 (50.8 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 31/81 (38%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++M+ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   244 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 301

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   302 --ALAQRKEERQAHLTNQYMQ 320

 Score = 124 (48.7 bits), Expect = 6.5e-07, P = 6.5e-07
 Identities = 28/85 (32%), Positives = 47/85 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + F +FG      ++ D    +SKG+G+V+    E+AQKA+ +MNGK L+G+ I+V
Sbjct:   141 ERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 199

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++      L R+  Q  ++
Sbjct:   200 G--RAQKKVERQTELKRKFEQMKQD 222


>UNIPROTKB|E7EQV3 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
            ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
            ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
        Length = 591

 Score = 132 (51.5 bits), Expect = 9.4e-08, P = 9.4e-08
 Identities = 29/72 (40%), Positives = 43/72 (59%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGYG+V   T+E A++A+  MNG LL+ R
Sbjct:    64 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 121

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   122 KVFVGRFK-SRK 132

 Score = 130 (50.8 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 31/81 (38%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++M+ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   263 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 320

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   321 --ALAQRKEERQAHLTNQYMQ 339

 Score = 128 (50.1 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 29/85 (34%), Positives = 47/85 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L D F +FG      ++ D    +SKG+G+V+    E+AQKA+ +MNGK L+G+ I+V
Sbjct:   160 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 218

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++      L R+  Q  ++
Sbjct:   219 G--RAQKKVERQTELKRKFEQMKQD 241


>UNIPROTKB|E2RQC8 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
            ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
            NextBio:20898275 Uniprot:E2RQC8
        Length = 596

 Score = 132 (51.5 bits), Expect = 9.5e-08, P = 9.5e-08
 Identities = 29/72 (40%), Positives = 43/72 (59%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGYG+V   T+E A++A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   167 KVFVGRFK-SRK 177

 Score = 128 (50.1 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 29/85 (34%), Positives = 47/85 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L D F +FG      ++ D    +SKG+G+V+    E+AQKA+ +MNGK L+G+ I+V
Sbjct:   205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++      L R+  Q  ++
Sbjct:   264 G--RAQKKVERQTELKRKFEQMKQD 286


>WB|WBGene00012904 [details] [associations]
            symbol:tiar-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
            HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
            ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
            EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
            UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
            NextBio:886000 Uniprot:Q9U2F5
        Length = 434

 Score = 130 (50.8 bits), Expect = 9.5e-08, P = 9.5e-08
 Identities = 26/56 (46%), Positives = 38/56 (67%)

Query:    74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
             L +AF +FG+V+EA II D   N+ KGYG+V+    E+A++A+ +MNG  L  R I
Sbjct:   148 LREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTI 203


>UNIPROTKB|F1PQV8 [details] [associations]
            symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
            GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
            EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
            Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
            Uniprot:F1PQV8
        Length = 382

 Score = 129 (50.5 bits), Expect = 9.8e-08, P = 9.8e-08
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + FS +G      +I D    +SKG+G+V   T E AQKA++D++GK ++G+V++V
Sbjct:   213 EKLKEIFSGYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYV 271

Query:   132 DNVRPSRRYNTDASLARQ 149
                R  ++    A L R+
Sbjct:   272 G--RAQKKIERLAELRRR 287

 Score = 107 (42.7 bits), Expect = 0.00026, P = 0.00026
 Identities = 21/60 (35%), Positives = 39/60 (65%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + FS FG ++ A +++++G+   KG+G V  S+ E+A KA+ +MNG+ +  + + V
Sbjct:   316 EKLKEEFSSFGSISRAKVMVEVGQG--KGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHV 373


>UNIPROTKB|P61286 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9913 "Bos taurus" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
            [GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
            GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
            UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
            Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
        Length = 636

 Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 29/72 (40%), Positives = 43/72 (59%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGYG+V   T+E A++A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   167 KVFVGRFK-SRK 177

 Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 31/81 (38%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++M+ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERQAHLTNQYMQ 384

 Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 29/85 (34%), Positives = 47/85 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L D F +FG      ++ D    +SKG+G+V+    E+AQKA+ +MNGK L+G+ I+V
Sbjct:   205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++      L R+  Q  ++
Sbjct:   264 G--RAQKKVERQTELKRKFEQMKQD 286


>UNIPROTKB|J9P326 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
            OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
            ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
            KEGG:cfa:612751 Uniprot:J9P326
        Length = 636

 Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 29/72 (40%), Positives = 43/72 (59%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGYG+V   T+E A++A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   167 KVFVGRFK-SRK 177

 Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 31/81 (38%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++M+ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERQAHLTNQYMQ 384

 Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 29/85 (34%), Positives = 47/85 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L D F +FG      ++ D    +SKG+G+V+    E+AQKA+ +MNGK L+G+ I+V
Sbjct:   205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++      L R+  Q  ++
Sbjct:   264 G--RAQKKVERQTELKRKFEQMKQD 286


>UNIPROTKB|P11940 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
            [GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
            "cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
            evidence=TAS] [GO:0008494 "translation activator activity"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
            "ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
            regulation of nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
            stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=TAS] [GO:0000288
            "nuclear-transcribed mRNA catabolic process,
            deadenylation-dependent decay" evidence=TAS] [GO:0000289
            "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
            [GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
            evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
            metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
            process" evidence=TAS] [GO:0044267 "cellular protein metabolic
            process" evidence=TAS] [GO:0045727 "positive regulation of
            translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
            Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
            Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
            GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
            eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
            Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
            PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
            PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
            CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
            EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
            EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
            EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
            IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
            RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
            PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
            PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
            PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
            PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
            SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
            STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
            PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
            KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
            HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
            PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
            BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
            EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
            PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
            Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
        Length = 636

 Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 29/72 (40%), Positives = 43/72 (59%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGYG+V   T+E A++A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   167 KVFVGRFK-SRK 177

 Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 31/81 (38%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++M+ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERQAHLTNQYMQ 384

 Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 29/85 (34%), Positives = 47/85 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L D F +FG      ++ D    +SKG+G+V+    E+AQKA+ +MNGK L+G+ I+V
Sbjct:   205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++      L R+  Q  ++
Sbjct:   264 G--RAQKKVERQTELKRKFEQMKQD 286


>UNIPROTKB|F2Z557 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
            EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
            ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
            Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
            Uniprot:F2Z557
        Length = 636

 Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 29/72 (40%), Positives = 43/72 (59%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGYG+V   T+E A++A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   167 KVFVGRFK-SRK 177

 Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 31/81 (38%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++M+ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERQAHLTNQYMQ 384

 Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 29/85 (34%), Positives = 47/85 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L D F +FG      ++ D    +SKG+G+V+    E+AQKA+ +MNGK L+G+ I+V
Sbjct:   205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++      L R+  Q  ++
Sbjct:   264 G--RAQKKVERQTELKRKFEQMKQD 286


>UNIPROTKB|Q5R8F7 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
            RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
            SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
            InParanoid:Q5R8F7 Uniprot:Q5R8F7
        Length = 636

 Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 29/72 (40%), Positives = 43/72 (59%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGYG+V   T+E A++A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   167 KVFVGRFK-SRK 177

 Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 31/81 (38%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++M+ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERQAHLTNQYMQ 384

 Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 29/85 (34%), Positives = 47/85 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L D F +FG      ++ D    +SKG+G+V+    E+AQKA+ +MNGK L+G+ I+V
Sbjct:   205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++      L R+  Q  ++
Sbjct:   264 G--RAQKKVERQTELKRKFEQMKQD 286


>MGI|MGI:1349722 [details] [associations]
            symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008022 "protein C-terminus binding"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
            EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
            EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
            EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
            PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
            ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
            STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
            PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
            KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
            CleanEx:MM_PABPC1 Genevestigator:P29341
            GermOnline:ENSMUSG00000022283 Uniprot:P29341
        Length = 636

 Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 29/72 (40%), Positives = 43/72 (59%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGYG+V   T+E A++A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   167 KVFVGRFK-SRK 177

 Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 31/81 (38%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++M+ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERQAHLTNQYMQ 384

 Score = 124 (48.7 bits), Expect = 7.5e-07, P = 7.5e-07
 Identities = 28/85 (32%), Positives = 47/85 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + F +FG      ++ D    +SKG+G+V+    E+AQKA+ +MNGK L+G+ I+V
Sbjct:   205 ERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++      L R+  Q  ++
Sbjct:   264 G--RAQKKVERQTELKRKFEQMKQD 286


>RGD|619838 [details] [associations]
            symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008022 "protein C-terminus binding"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
            RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
            ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
            MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
            Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
            UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
            Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
        Length = 636

 Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 29/72 (40%), Positives = 43/72 (59%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGYG+V   T+E A++A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   167 KVFVGRFK-SRK 177

 Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 31/81 (38%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++M+ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERQAHLTNQYMQ 384

 Score = 124 (48.7 bits), Expect = 7.5e-07, P = 7.5e-07
 Identities = 28/85 (32%), Positives = 47/85 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + F +FG      ++ D    +SKG+G+V+    E+AQKA+ +MNGK L+G+ I+V
Sbjct:   205 ERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++      L R+  Q  ++
Sbjct:   264 G--RAQKKVERQTELKRKFEQMKQD 286


>UNIPROTKB|I3LS00 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
            mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
            GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
            GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
            Uniprot:I3LS00
        Length = 647

 Score = 132 (51.5 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 29/72 (40%), Positives = 43/72 (59%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGYG+V   T+E A++A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   167 KVFVGRFK-SRK 177

 Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 31/81 (38%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++M+ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERQAHLTNQYMQ 384

 Score = 128 (50.1 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 29/85 (34%), Positives = 47/85 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L D F +FG      ++ D    +SKG+G+V+    E+AQKA+ +MNGK L+G+ I+V
Sbjct:   205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++      L R+  Q  ++
Sbjct:   264 G--RAQKKVERQTELKRKFEQMKQD 286


>UNIPROTKB|F1NH82 [details] [associations]
            symbol:F1NH82 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
            EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
            Ensembl:ENSGALT00000023332 Uniprot:F1NH82
        Length = 469

 Score = 130 (50.8 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 31/81 (38%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++M+ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   140 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 197

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   198 --ALAQRKEERQAHLTNQYMQ 216

 Score = 124 (48.7 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 28/85 (32%), Positives = 47/85 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + F +FG      ++ D    +SKG+G+V+    E+AQKA+ +MNGK L+G+ I+V
Sbjct:    37 ERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 95

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++      L R+  Q  ++
Sbjct:    96 G--RAQKKVERQTELKRKFEQMKQD 118


>UNIPROTKB|F8W646 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
            ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
            Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
            Uniprot:F8W646
        Length = 156

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF TT E L   F Q+G +T+  ++ D    RS+G+G+VT +T EE   A+     K+ 
Sbjct:    21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV- 79

Query:   125 DGRVI 129
             DGRV+
Sbjct:    80 DGRVV 84


>UNIPROTKB|J3KQA8 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
        Length = 102

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF TT E L   F Q+G +T+  ++ D    RS+G+G+VT +T EE   A+     K+ 
Sbjct:    21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV- 79

Query:   125 DGRVI 129
             DGRV+
Sbjct:    80 DGRVV 84


>UNIPROTKB|G4N7J4 [details] [associations]
            symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
            RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
            KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
            EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
            Uniprot:G4N7J4
        Length = 479

 Score = 130 (50.8 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 27/65 (41%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S     E+L  AFS FG V+EA ++ D+   RS+GYG+V      +A+KAL  M+G+ L
Sbjct:   183 LSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWL 242

Query:   125 DGRVI 129
               R I
Sbjct:   243 GSRAI 247


>DICTYBASE|DDB_G0293558 [details] [associations]
            symbol:pabpc1A "polyadenylate binding protein (PABP)"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
            binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
            GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
            ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
            EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
            ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
        Length = 565

 Score = 131 (51.2 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 25/65 (38%), Positives = 40/65 (61%)

Query:    74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
             L D FS FG +    ++ D G N SKG+G+V   T+E A KA+  +NG +++G+ +FV  
Sbjct:   114 LYDTFSAFGNILSCKVVTDDG-NSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGP 172

Query:   134 VRPSR 138
              + S+
Sbjct:   173 FKSSK 177

 Score = 124 (48.7 bits), Expect = 6.3e-07, P = 6.3e-07
 Identities = 22/68 (32%), Positives = 42/68 (61%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             ++  S   + L + FSQFG +T A ++ D     SKG+G+V  +  +EA +A+ +MNG++
Sbjct:   290 NIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRM 349

Query:   124 LDGRVIFV 131
             +  + ++V
Sbjct:   350 IGTKPLYV 357

 Score = 109 (43.4 bits), Expect = 0.00023, P = 0.00023
 Identities = 26/95 (27%), Positives = 51/95 (53%)

Query:    52 MQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEE 111
             ++  NV F++  ++S     + L +   Q+G++T  TI+ D  K +SKG+G+    + E 
Sbjct:   185 VKFTNV-FFK--NLSEDVGPDQLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESAEA 240

Query:   112 AQKALVDMNGKLLDGRVIFVDNVRPSRRYNTDASL 146
             A+  + + NGK+  G+ I+    R  ++   +A L
Sbjct:   241 AKNVVENENGKIFHGKPIYAG--RAQKKIEREAEL 273


>UNIPROTKB|P0CB38 [details] [associations]
            symbol:PABPC4L "Polyadenylate-binding protein 4-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
            EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
            ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
            DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
            UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
            neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
            Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
        Length = 370

 Score = 128 (50.1 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 28/85 (32%), Positives = 49/85 (57%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L D FS++G+     ++ D    +SKG+G+V+  + E A+KA+ +MNG+ ++G++IFV
Sbjct:   204 ERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFV 262

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++    A L +   Q   E
Sbjct:   263 G--RAQKKVERQAELKQMFEQLKRE 285

 Score = 108 (43.1 bits), Expect = 0.00018, P = 0.00018
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + FS FG ++   ++ + G+  SKG+G +  S+ E+A KA+ +MNG++L  + + +
Sbjct:   307 EKLRNEFSSFGSISRVKVMQEEGQ--SKGFGLICFSSPEDATKAMTEMNGRILGSKPLSI 364

 Score = 107 (42.7 bits), Expect = 0.00025, P = 0.00025
 Identities = 26/85 (30%), Positives = 45/85 (52%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L + FS FG++  + ++ D     SKGY +V    +  A +A+ +MNGKLL G 
Sbjct:   108 SIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGC 165

Query:   128 VIFVDNVRPSRRYNTDASLARQPAQ 152
              +FV   +   R + +A L  + ++
Sbjct:   166 KVFVGRFK--NRKDREAELRSKASE 188


>UNIPROTKB|H0Y6E7 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
            Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
            Uniprot:H0Y6E7
        Length = 292

 Score = 126 (49.4 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 25/70 (35%), Positives = 43/70 (61%)

Query:    69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             T ++ L   F ++G++ E  ++ D   N+S+G+ +VT  +  +A+ A  DMNGK LDG+ 
Sbjct:    21 TNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKA 80

Query:   129 IFVDNV-RPS 137
             I V+   +PS
Sbjct:    81 IKVEQATKPS 90


>UNIPROTKB|H3BT71 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
            Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
            SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
        Length = 296

 Score = 126 (49.4 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 25/70 (35%), Positives = 43/70 (61%)

Query:    69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             T ++ L   F ++G++ E  ++ D   N+S+G+ +VT  +  +A+ A  DMNGK LDG+ 
Sbjct:    19 TNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKA 78

Query:   129 IFVDNV-RPS 137
             I V+   +PS
Sbjct:    79 IKVEQATKPS 88


>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
            symbol:pabpc1l "poly(A) binding protein,
            cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
            HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
            UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
            GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
            Bgee:Q803E7 Uniprot:Q803E7
        Length = 620

 Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 29/72 (40%), Positives = 43/72 (59%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGYG+V   T+E A +A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAANRAIETMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV + + SR+
Sbjct:   167 KVFVGHFK-SRK 177

 Score = 128 (50.1 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 28/85 (32%), Positives = 49/85 (57%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + F++FG+     ++ D  + RS+G+G+V      +A++A+ +MNGK L+GRV++V
Sbjct:   205 EKLKNIFTEFGKTLSVCVMTD-ERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  +R      L R+  Q  +E
Sbjct:   264 G--RAQKRLERQGELKRKFEQIKQE 286

 Score = 115 (45.5 bits), Expect = 6.7e-06, P = 6.7e-06
 Identities = 28/85 (32%), Positives = 46/85 (54%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   E L   F+ +G +T A ++ D G   S+G+G+V  S+ EEA KA+ +MNG+++  +
Sbjct:   304 SIDDEKLRKEFAPYGTITSAKVMTDGG--HSRGFGFVCFSSPEEATKAVTEMNGRIVSTK 361

Query:   128 VIFVDNVRPSRRYNTDASLARQPAQ 152
              ++V      R+    A L  Q  Q
Sbjct:   362 PLYV--ALAQRKEERKAILTNQYIQ 384


>UNIPROTKB|E1C903 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
            binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
            EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
            UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
            Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
            NextBio:20822696 Uniprot:E1C903
        Length = 630

 Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++++ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERKAHLTNQYMQ 384

 Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 28/85 (32%), Positives = 50/85 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + FS++G+     ++ D    +SKG+G+V+    E+A KA+ +MNGK ++G+++FV
Sbjct:   205 ERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++    A L R+  Q  +E
Sbjct:   264 G--RAQKKVERQAELKRRFEQLKQE 286

 Score = 121 (47.7 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 27/72 (37%), Positives = 41/72 (56%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGY +V   T++ A +A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   167 KVFVGRFK-SRK 177


>UNIPROTKB|Q6IP09 [details] [associations]
            symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
            species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
            "eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
            "protein self-association" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
            GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
            UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
            GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
            Uniprot:Q6IP09
        Length = 633

 Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 29/72 (40%), Positives = 43/72 (59%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGYG+V   T+E A++A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   167 KVFVGRFK-SRK 177

 Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   F+ FG +T A ++M+ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 ERLRKEFTPFGSITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERQAHLTNQYMQ 384

 Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 29/85 (34%), Positives = 47/85 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + F Q+G      ++ D    +S+G+G+V+    E+AQKA+ DMNGK L+G+ IFV
Sbjct:   205 ERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++      L R+  Q  ++
Sbjct:   264 G--RAQKKVERQTELKRKFEQMKQD 286


>UNIPROTKB|P20965 [details] [associations]
            symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
            species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
            initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
            self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
            EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
            ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
            KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
        Length = 633

 Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 29/72 (40%), Positives = 43/72 (59%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGYG+V   T+E A++A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   167 KVFVGRFK-SRK 177

 Score = 124 (48.7 bits), Expect = 7.4e-07, P = 7.4e-07
 Identities = 30/81 (37%), Positives = 46/81 (56%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   F  FG +T A ++M+ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 ERLRKEFLPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERQAHLTNQYMQ 384

 Score = 119 (46.9 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 26/85 (30%), Positives = 47/85 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + F ++G      ++ D    +SKG+G+V+    E+AQKA+ +MNGK ++G+ +FV
Sbjct:   205 ERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++      L R+  Q  ++
Sbjct:   264 G--RAQKKVERQTELKRKFEQMKQD 286


>UNIPROTKB|K7GRX3 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
            Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
            Uniprot:K7GRX3
        Length = 306

 Score = 126 (49.4 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 25/70 (35%), Positives = 43/70 (61%)

Query:    69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             T ++ L   F ++G++ E  ++ D   N+S+G+ +VT  +  +A+ A  DMNGK LDG+ 
Sbjct:    19 TNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKA 78

Query:   129 IFVDNV-RPS 137
             I V+   +PS
Sbjct:    79 IKVEQATKPS 88


>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
            symbol:pabpc4 "poly(A) binding protein,
            cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
            EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
            ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
            GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
            NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
        Length = 637

 Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++++ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   309 EKLRKEFSPFGSITSAKVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 366

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   367 --ALAQRKEERKAHLTNQYMQ 385

 Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 27/72 (37%), Positives = 41/72 (56%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGY +V   T++ A +A+  MNG LL+ R
Sbjct:   110 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR 167

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   168 KVFVGRFK-SRK 178

 Score = 116 (45.9 bits), Expect = 5.4e-06, P = 5.4e-06
 Identities = 25/85 (29%), Positives = 47/85 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             + L + F ++G+     ++ D    +S+G+G+V+    E+A KA+ +MNG  L+G+ +FV
Sbjct:   206 QRLKELFDKYGKTLSVKVMTD-PTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFV 264

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++    A L R+  Q  +E
Sbjct:   265 G--RAQKKMERQAELKRKFEQLKQE 287


>UNIPROTKB|F1M5N1 [details] [associations]
            symbol:F1M5N1 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
            ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
        Length = 207

 Score = 121 (47.7 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF TT E L   F Q+G +T+  ++ D    RS+G+G+VT +T EE   A+     K+ 
Sbjct:    17 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV- 75

Query:   125 DGRVI 129
             DGRV+
Sbjct:    76 DGRVV 80


>UNIPROTKB|K7GQZ8 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
            Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
        Length = 88

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 23/70 (32%), Positives = 38/70 (54%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             ++ +  T+E L D FS+ G V    ++ D    + KGYG+     +E A  A+ ++NG+ 
Sbjct:     3 NIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGRE 62

Query:   124 LDGRVIFVDN 133
               GR + VDN
Sbjct:    63 FSGRALRVDN 72


>UNIPROTKB|F1M2S4 [details] [associations]
            symbol:F1M2S4 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
            ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
        Length = 208

 Score = 121 (47.7 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF TT E L   F Q+G +T+  ++ D    RS+G+G+VT +T EE   A+     K+ 
Sbjct:    14 LSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV- 72

Query:   125 DGRVI 129
             DGRV+
Sbjct:    73 DGRVV 77


>UNIPROTKB|J3KTH5 [details] [associations]
            symbol:PABPC4L "Polyadenylate-binding protein 4-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
            EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
            RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
            Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
            Uniprot:J3KTH5
        Length = 428

 Score = 128 (50.1 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 28/85 (32%), Positives = 49/85 (57%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L D FS++G+     ++ D    +SKG+G+V+  + E A+KA+ +MNG+ ++G++IFV
Sbjct:   262 ERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFV 320

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++    A L +   Q   E
Sbjct:   321 G--RAQKKVERQAELKQMFEQLKRE 343

 Score = 108 (43.1 bits), Expect = 0.00022, P = 0.00022
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + FS FG ++   ++ + G+  SKG+G +  S+ E+A KA+ +MNG++L  + + +
Sbjct:   365 EKLRNEFSSFGSISRVKVMQEEGQ--SKGFGLICFSSPEDATKAMTEMNGRILGSKPLSI 422

 Score = 107 (42.7 bits), Expect = 0.00031, P = 0.00031
 Identities = 26/85 (30%), Positives = 45/85 (52%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L + FS FG++  + ++ D     SKGY +V    +  A +A+ +MNGKLL G 
Sbjct:   166 SIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGC 223

Query:   128 VIFVDNVRPSRRYNTDASLARQPAQ 152
              +FV   +   R + +A L  + ++
Sbjct:   224 KVFVGRFK--NRKDREAELRSKASE 246


>UNIPROTKB|Q4VY17 [details] [associations]
            symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
            IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
            Ensembl:ENST00000537323 Uniprot:Q4VY17
        Length = 330

 Score = 126 (49.4 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 29/83 (34%), Positives = 45/83 (54%)

Query:    74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
             L D FSQFG++    ++ D     S+ +G+V     EEAQKA+V MNGK + GR+++   
Sbjct:   207 LQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAG- 264

Query:   134 VRPSRRYNTDASLARQPAQSPEE 156
              R  +R      L R+  Q  ++
Sbjct:   265 -RAQKRVERQNELKRRFEQMKQD 286

 Score = 119 (46.9 bits), Expect = 9.1e-07, P = 9.1e-07
 Identities = 28/72 (38%), Positives = 42/72 (58%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    +  D  ++ S+G+G+V   T E AQ+A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSTFGNILSCKVACD--EHGSRGFGFVHFETHEAAQQAINTMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV + + SRR
Sbjct:   167 KVFVGHFK-SRR 177


>UNIPROTKB|E7ERJ7 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
            ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
            Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
            Bgee:E7ERJ7 Uniprot:E7ERJ7
        Length = 604

 Score = 130 (50.8 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 31/81 (38%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++M+ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   276 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   334 --ALAQRKEERQAHLTNQYMQ 352

 Score = 128 (50.1 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 29/85 (34%), Positives = 47/85 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L D F +FG      ++ D    +SKG+G+V+    E+AQKA+ +MNGK L+G+ I+V
Sbjct:   173 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 231

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++      L R+  Q  ++
Sbjct:   232 G--RAQKKVERQTELKRKFEQMKQD 254


>RGD|1563142 [details] [associations]
            symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
            GeneTree:ENSGT00640000091232 IPI:IPI00778604
            ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
            UCSC:RGD:1563142 Uniprot:D3ZAS7
        Length = 607

 Score = 130 (50.8 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 30/83 (36%), Positives = 48/83 (57%)

Query:    74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
             L D FSQFG+ T++  +M     +S+G+G++     EEAQKA+  MNGK + G++++V  
Sbjct:   207 LQDLFSQFGK-TQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVG- 264

Query:   134 VRPSRRYNTDASLARQPAQSPEE 156
              R  +R      L R+  Q  +E
Sbjct:   265 -RAQKRAERQNELKRRFEQMKQE 286

 Score = 119 (46.9 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 27/72 (37%), Positives = 44/72 (61%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +  + ++ +  ++ S+G+G+V   T E AQKA+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSTFGSILSSKVVYN--EHGSRGFGFVHFETHEAAQKAINTMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV + + SR+
Sbjct:   167 KVFVGHFK-SRQ 177

 Score = 115 (45.5 bits), Expect = 6.5e-06, P = 6.5e-06
 Identities = 22/64 (34%), Positives = 41/64 (64%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L + FS +G +T A ++ +   + SKG+G+V  S+ EEA KA+ +MNG+++  +
Sbjct:   304 SINDDRLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361

Query:   128 VIFV 131
              ++V
Sbjct:   362 PLYV 365


>TAIR|locus:2044370 [details] [associations]
            symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
            IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
            ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
            EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
            TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
            Genevestigator:Q501B0 Uniprot:Q501B0
        Length = 336

 Score = 126 (49.4 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 25/63 (39%), Positives = 39/63 (61%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +++ T ++ +   F QFG++ EA +I D    RSKGYG+VT    E A +A  +MN  ++
Sbjct:    29 LAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMN-PVI 87

Query:   125 DGR 127
             DGR
Sbjct:    88 DGR 90


>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
            symbol:pabpc1a "poly A binding protein,
            cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
            EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
            UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
            GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
            NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
        Length = 634

 Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 29/72 (40%), Positives = 42/72 (58%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGYG+V   T E A++A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV   + SR+
Sbjct:   167 KVFVGRFK-SRK 177

 Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 31/81 (38%), Positives = 47/81 (58%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A ++M+ G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERQAHLTSQYMQ 384

 Score = 112 (44.5 bits), Expect = 7.2e-05, P = 7.2e-05
 Identities = 24/85 (28%), Positives = 47/85 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + F ++G      ++ D    +SKG+G+V+    E+AQ+A+ +MNGK ++G+ ++V
Sbjct:   205 EKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 263

Query:   132 DNVRPSRRYNTDASLARQPAQSPEE 156
                R  ++      L R+  Q  ++
Sbjct:   264 G--RAQKKGERQTELKRKFEQMKQD 286


>ZFIN|ZDB-GENE-050327-97 [details] [associations]
            symbol:rbm39b "RNA binding motif protein 39b"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
            GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
            HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
            EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
            UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
            GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
            OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
        Length = 539

 Score = 129 (50.5 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 33/84 (39%), Positives = 51/84 (60%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             S+ F+ T++ML   F  FG++    ++MD    RSKGYG+++ +  E A+KAL  +NG  
Sbjct:   270 SLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFE 329

Query:   124 LDGRVIFVDNVRPSRRYNTDASLA 147
             L GR + V +V  + R  +DAS A
Sbjct:   330 LAGRPMKVGHV--TER--SDASSA 349


>UNIPROTKB|Q3AF33 [details] [associations]
            symbol:CHY_0389 "RNA-binding protein" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
            ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
            KEGG:chy:CHY_0389 PATRIC:21273941
            BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
        Length = 83

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 23/64 (35%), Positives = 40/64 (62%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L +  S+FG+V  A +I++    RS+GYG++    +E+A+K +  +NGK ++GR + V
Sbjct:    17 EQLQEIASEFGEVIGARVILEKSTGRSRGYGFI-EVRDEDAEKFMTGLNGKEVEGRQLVV 75

Query:   132 DNVR 135
                R
Sbjct:    76 SEAR 79


>TIGR_CMR|CHY_0389 [details] [associations]
            symbol:CHY_0389 "RNA-binding protein" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
            GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
            eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
            ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
            KEGG:chy:CHY_0389 PATRIC:21273941
            BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
        Length = 83

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 23/64 (35%), Positives = 40/64 (62%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L +  S+FG+V  A +I++    RS+GYG++    +E+A+K +  +NGK ++GR + V
Sbjct:    17 EQLQEIASEFGEVIGARVILEKSTGRSRGYGFI-EVRDEDAEKFMTGLNGKEVEGRQLVV 75

Query:   132 DNVR 135
                R
Sbjct:    76 SEAR 79


>POMBASE|SPBC4F6.14 [details] [associations]
            symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
            species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
            "rRNA processing" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
            HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
            PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
            STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
            KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
        Length = 674

 Score = 130 (50.8 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 25/80 (31%), Positives = 46/80 (57%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             +++F T ++ L + FS  G +  A ++ +     ++GYG+VT S  E+AQ+A  ++  K 
Sbjct:    11 NLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKK 70

Query:   124 LDGRVIFVDNVRPSRRYNTD 143
             L GR++ +D   P +R   D
Sbjct:    71 LHGRILRLDFATPRKRSEVD 90


>MGI|MGI:1100851 [details] [associations]
            symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
            1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
            [GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
            "AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
            binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
            binding" evidence=ISO] [GO:0045727 "positive regulation of
            translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
            evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
            GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
            HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
            OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
            EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
            UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
            DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
            PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
            KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
            OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
            Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
        Length = 326

 Score = 125 (49.1 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 29/77 (37%), Positives = 41/77 (53%)

Query:    70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
             T+E L   FS  G+V  A +I D     S GYG+V   T ++A++A+  +NG  L  + I
Sbjct:    32 TQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTI 91

Query:   130 FVDNVRPSRRYNTDASL 146
              V   RPS     DA+L
Sbjct:    92 KVSYARPSSEVIKDANL 108

 Score = 111 (44.1 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query:    73 MLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             +L   F  FG VT   +I D   N+ KG+G+VT +  EEA  A+  +NG  L  +++ V
Sbjct:   259 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQV 317


>RGD|1308649 [details] [associations]
            symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
            translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
            evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
            [GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
            [GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
            [GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
            HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
            EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
            UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
            Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
            UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
            Uniprot:B5DF91
        Length = 326

 Score = 125 (49.1 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 29/77 (37%), Positives = 41/77 (53%)

Query:    70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
             T+E L   FS  G+V  A +I D     S GYG+V   T ++A++A+  +NG  L  + I
Sbjct:    32 TQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTI 91

Query:   130 FVDNVRPSRRYNTDASL 146
              V   RPS     DA+L
Sbjct:    92 KVSYARPSSEVIKDANL 108

 Score = 111 (44.1 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query:    73 MLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             +L   F  FG VT   +I D   N+ KG+G+VT +  EEA  A+  +NG  L  +++ V
Sbjct:   259 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQV 317


>DICTYBASE|DDB_G0284663 [details] [associations]
            symbol:mrd1 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
            [GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
            processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
            GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
            Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
            KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
            SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
            KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
        Length = 895

 Score = 131 (51.2 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 28/80 (35%), Positives = 49/80 (61%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             ++S+ST +E L   FS+FG+++E  I +D    +SKG  ++     E A +AL DM+GK+
Sbjct:   367 NLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDMDGKV 426

Query:   124 LDGRVIFV--DNVRPSRRYN 141
               GR+I V      P+++++
Sbjct:   427 FQGRLIHVLPGKAAPAKQFS 446


>UNIPROTKB|F1NZD3 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
            GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
            InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
            EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
            Uniprot:F1NZD3
        Length = 385

 Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 25/70 (35%), Positives = 43/70 (61%)

Query:    69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             T ++ L   F ++G++ E  ++ D   N+S+G+ +VT  +  +A+ A  DMNGK LDG+ 
Sbjct:    19 TNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKA 78

Query:   129 IFVDNV-RPS 137
             I V+   +PS
Sbjct:    79 IKVEQATKPS 88


>UNIPROTKB|F1RQ90 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071347 "cellular response to interleukin-1"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
            protein ectodomain proteolysis" evidence=IEA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IEA] [GO:0003682 "chromatin binding"
            evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
            UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
            Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
            Uniprot:F1RQ90
        Length = 390

 Score = 126 (49.4 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 25/70 (35%), Positives = 43/70 (61%)

Query:    69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             T ++ L   F ++G++ E  ++ D   N+S+G+ +VT  +  +A+ A  DMNGK LDG+ 
Sbjct:    19 TNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKA 78

Query:   129 IFVDNV-RPS 137
             I V+   +PS
Sbjct:    79 IKVEQATKPS 88


>RGD|1565256 [details] [associations]
            symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
            "single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
            binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
            complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
            evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
            evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IMP] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO] [GO:0070062
            "extracellular vesicular exosome" evidence=ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
            response to interleukin-1" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
            GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
            EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
            UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
            STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
            Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
            InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
            Uniprot:Q4V898
        Length = 390

 Score = 126 (49.4 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 25/70 (35%), Positives = 43/70 (61%)

Query:    69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             T ++ L   F ++G++ E  ++ D   N+S+G+ +VT  +  +A+ A  DMNGK LDG+ 
Sbjct:    19 TNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKA 78

Query:   129 IFVDNV-RPS 137
             I V+   +PS
Sbjct:    79 IKVEQATKPS 88


>UNIPROTKB|D3JUI8 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9913 "Bos taurus" [GO:0071347
            "cellular response to interleukin-1" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
            "extracellular vesicular exosome" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
            evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
            "chromatin binding" evidence=IEA] [GO:0001047 "core promoter
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
            EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
            Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
            NextBio:20869035 Uniprot:D3JUI8
        Length = 391

 Score = 126 (49.4 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 25/70 (35%), Positives = 43/70 (61%)

Query:    69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             T ++ L   F ++G++ E  ++ D   N+S+G+ +VT  +  +A+ A  DMNGK LDG+ 
Sbjct:    19 TNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKA 78

Query:   129 IFVDNV-RPS 137
             I V+   +PS
Sbjct:    79 IKVEQATKPS 88


>UNIPROTKB|P38159 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
            [GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
            evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
            evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
            evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0006366 "transcription from
            RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
            euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] Reactome:REACT_71
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
            GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
            GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
            EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
            EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
            IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
            RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
            ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
            MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
            SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
            Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
            KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
            MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
            InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
            NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
            Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
        Length = 391

 Score = 126 (49.4 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 25/70 (35%), Positives = 43/70 (61%)

Query:    69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             T ++ L   F ++G++ E  ++ D   N+S+G+ +VT  +  +A+ A  DMNGK LDG+ 
Sbjct:    19 TNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKA 78

Query:   129 IFVDNV-RPS 137
             I V+   +PS
Sbjct:    79 IKVEQATKPS 88


>UNIPROTKB|A5A6M3 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9598 "Pan troglodytes" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
            GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
            GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
            ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
            KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
        Length = 391

 Score = 126 (49.4 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 25/70 (35%), Positives = 43/70 (61%)

Query:    69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             T ++ L   F ++G++ E  ++ D   N+S+G+ +VT  +  +A+ A  DMNGK LDG+ 
Sbjct:    19 TNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKA 78

Query:   129 IFVDNV-RPS 137
             I V+   +PS
Sbjct:    79 IKVEQATKPS 88


>UNIPROTKB|Q4R7F0 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
            GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
            GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
            GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
            Uniprot:Q4R7F0
        Length = 391

 Score = 126 (49.4 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 25/70 (35%), Positives = 43/70 (61%)

Query:    69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             T ++ L   F ++G++ E  ++ D   N+S+G+ +VT  +  +A+ A  DMNGK LDG+ 
Sbjct:    19 TNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKA 78

Query:   129 IFVDNV-RPS 137
             I V+   +PS
Sbjct:    79 IKVEQATKPS 88


>MGI|MGI:1343044 [details] [associations]
            symbol:Rbmx "RNA binding motif protein, X chromosome"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
            evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
            evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISO] [GO:0006376 "mRNA splice site selection"
            evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
            EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
            EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
            EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
            RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
            SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
            PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
            Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
            UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
            Genevestigator:Q9WV02 Uniprot:Q9WV02
        Length = 391

 Score = 126 (49.4 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 25/70 (35%), Positives = 43/70 (61%)

Query:    69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             T ++ L   F ++G++ E  ++ D   N+S+G+ +VT  +  +A+ A  DMNGK LDG+ 
Sbjct:    19 TNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKA 78

Query:   129 IFVDNV-RPS 137
             I V+   +PS
Sbjct:    79 IKVEQATKPS 88


>UNIPROTKB|Q96B58 [details] [associations]
            symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
            protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
            HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
            ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
            Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
        Length = 214

 Score = 120 (47.3 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 23/61 (37%), Positives = 42/61 (68%)

Query:    69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             TT+++ A AF+ FG++++A ++ D+   +SKGYG+V+   + +A+ A+  M G+ L GR 
Sbjct:   118 TTEDIKA-AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 176

Query:   129 I 129
             I
Sbjct:   177 I 177


>UNIPROTKB|E2R068 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
            Uniprot:E2R068
        Length = 392

 Score = 126 (49.4 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 25/70 (35%), Positives = 43/70 (61%)

Query:    69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             T ++ L   F ++G++ E  ++ D   N+S+G+ +VT  +  +A+ A  DMNGK LDG+ 
Sbjct:    20 TNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKA 79

Query:   129 IFVDNV-RPS 137
             I V+   +PS
Sbjct:    80 IKVEQATKPS 89


>UNIPROTKB|F8VZ49 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
            HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
            ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
            Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
            Uniprot:F8VZ49
        Length = 231

 Score = 121 (47.7 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF TT E L   F Q+G +T+  ++ D    RS+G+G+VT +T EE   A+     K+ 
Sbjct:    40 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV- 98

Query:   125 DGRVI 129
             DGRV+
Sbjct:    99 DGRVV 103


>CGD|CAL0005232 [details] [associations]
            symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0044011 "single-species biofilm formation on inanimate
            substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
            eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
            ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
            GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
            Uniprot:Q5AB84
        Length = 400

 Score = 126 (49.4 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 32/93 (34%), Positives = 50/93 (53%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S++     L   F   G V  A +IM+    +S+GYGYV   ++  A+KAL +M GK +
Sbjct:   175 LSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEI 234

Query:   125 DGRVIFVD--NVRP-SRRYNTDASLARQPAQSP 154
             DGR I +D    +P + + N D +     +QSP
Sbjct:   235 DGRPINLDMSTGKPHASKSNNDRAKQYGDSQSP 267

 Score = 113 (44.8 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 26/80 (32%), Positives = 45/80 (56%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             ++SF+  ++ L + F ++G V    +       + KG+GYV  S+ +EA+ AL  MNG+ 
Sbjct:   276 NLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEY 335

Query:   124 LDGRVIFVDNVRPSRRYNTD 143
             ++GR   +D   P  R NT+
Sbjct:   336 IEGRPCRLDFSTP--RDNTN 353


>UNIPROTKB|Q5AB84 [details] [associations]
            symbol:NSR1 "Potential nuclear localization sequence
            binding protein Nsr1p" species:237561 "Candida albicans SC5314"
            [GO:0044011 "single-species biofilm formation on inanimate
            substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
            EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
            RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
            STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
            KEGG:cal:CaO19.6090 Uniprot:Q5AB84
        Length = 400

 Score = 126 (49.4 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 32/93 (34%), Positives = 50/93 (53%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S++     L   F   G V  A +IM+    +S+GYGYV   ++  A+KAL +M GK +
Sbjct:   175 LSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEI 234

Query:   125 DGRVIFVD--NVRP-SRRYNTDASLARQPAQSP 154
             DGR I +D    +P + + N D +     +QSP
Sbjct:   235 DGRPINLDMSTGKPHASKSNNDRAKQYGDSQSP 267

 Score = 113 (44.8 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 26/80 (32%), Positives = 45/80 (56%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             ++SF+  ++ L + F ++G V    +       + KG+GYV  S+ +EA+ AL  MNG+ 
Sbjct:   276 NLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEY 335

Query:   124 LDGRVIFVDNVRPSRRYNTD 143
             ++GR   +D   P  R NT+
Sbjct:   336 IEGRPCRLDFSTP--RDNTN 353


>UNIPROTKB|G5E5V7 [details] [associations]
            symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
            export" evidence=IEA] [GO:0045111 "intermediate filament
            cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
            evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
            EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
            Uniprot:G5E5V7
        Length = 319

 Score = 124 (48.7 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 26/65 (40%), Positives = 41/65 (63%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF TT E L   F Q+G +T+  ++MD    RS+G+G+VT +T EE   A+ +   + +
Sbjct:    30 LSFETTDESLRSHFEQWGMLTDC-VVMDPNTKRSRGFGFVTYTTVEEVDAAM-NARPQKM 87

Query:   125 DGRVI 129
             DGRV+
Sbjct:    88 DGRVV 92


>MGI|MGI:1330294 [details] [associations]
            symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
            evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
            replication origin binding" evidence=ISO] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=ISO] [GO:0043565
            "sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
            GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
            GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
            HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
            InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
            ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
            IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
            ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
            MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
            PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
            NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
            GermOnline:ENSMUSG00000020358 Uniprot:Q99020
        Length = 285

 Score = 123 (48.4 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S+ T+K+ L D F++FG+V + TI MD    RS+G+G++        +K L D     L
Sbjct:    82 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL-DQKEHRL 140

Query:   125 DGRVI 129
             DGRVI
Sbjct:   141 DGRVI 145


>UNIPROTKB|Q9QX80 [details] [associations]
            symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
            HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
            InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
            EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
            PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
            RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
            STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
            GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
            Genevestigator:Q9QX80 Uniprot:Q9QX80
        Length = 285

 Score = 123 (48.4 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S+ T+K+ L D F++FG+V + TI MD    RS+G+G++        +K L D     L
Sbjct:    82 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL-DQKEHRL 140

Query:   125 DGRVI 129
             DGRVI
Sbjct:   141 DGRVI 145


>UNIPROTKB|D4A964 [details] [associations]
            symbol:Tial1 "Protein Tial1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
        Length = 368

 Score = 125 (49.1 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 23/60 (38%), Positives = 40/60 (66%)

Query:    70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
             T E +  AF+ FG++++A ++ D+   +SKGYG+V+   + +A+ A+V M G+ L GR I
Sbjct:   126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185

 Score = 106 (42.4 bits), Expect = 0.00038, P = 0.00038
 Identities = 22/68 (32%), Positives = 36/68 (52%)

Query:    62 CISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNG 121
             C  ++   T +++   FS FGQ+ E  +  +      KGY +V  ST E A  A+V +NG
Sbjct:   226 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279

Query:   122 KLLDGRVI 129
               ++G V+
Sbjct:   280 TTIEGHVV 287


>UNIPROTKB|F1LQ36 [details] [associations]
            symbol:Tial1 "Protein Tial1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
            GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
            Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
        Length = 371

 Score = 125 (49.1 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 23/60 (38%), Positives = 40/60 (66%)

Query:    70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
             T E +  AF+ FG++++A ++ D+   +SKGYG+V+   + +A+ A+V M G+ L GR I
Sbjct:   126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185

 Score = 106 (42.4 bits), Expect = 0.00038, P = 0.00038
 Identities = 22/68 (32%), Positives = 36/68 (52%)

Query:    62 CISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNG 121
             C  ++   T +++   FS FGQ+ E  +  +      KGY +V  ST E A  A+V +NG
Sbjct:   226 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279

Query:   122 KLLDGRVI 129
               ++G V+
Sbjct:   280 TTIEGHVV 287


>UNIPROTKB|Q01085 [details] [associations]
            symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
            "apoptotic process" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
            "defense response" evidence=TAS] [GO:0005764 "lysosome"
            evidence=TAS] [GO:0006357 "regulation of transcription from RNA
            polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
            apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
            GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
            GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
            HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
            EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
            RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
            PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
            ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
            MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
            PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
            Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
            CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
            neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
            ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
            NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
            Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
        Length = 375

 Score = 125 (49.1 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 23/60 (38%), Positives = 40/60 (66%)

Query:    70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
             T E +  AF+ FG++++A ++ D+   +SKGYG+V+   + +A+ A+V M G+ L GR I
Sbjct:   109 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 168

 Score = 106 (42.4 bits), Expect = 0.00039, P = 0.00039
 Identities = 22/68 (32%), Positives = 36/68 (52%)

Query:    62 CISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNG 121
             C  ++   T +++   FS FGQ+ E  +  +      KGY +V  ST E A  A+V +NG
Sbjct:   209 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 262

Query:   122 KLLDGRVI 129
               ++G V+
Sbjct:   263 TTIEGHVV 270


>ZFIN|ZDB-GENE-030131-579 [details] [associations]
            symbol:rbmx "RNA binding motif protein, X-linked"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISS] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0070062 "extracellular vesicular exosome" evidence=ISS]
            [GO:0071347 "cellular response to interleukin-1" evidence=ISS]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
            organismal development" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
            GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
            GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
            GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
            GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
            EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
            UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
            PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
            GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
            OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
            Bgee:Q7ZWA3 Uniprot:Q7ZWA3
        Length = 379

 Score = 125 (49.1 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 28/86 (32%), Positives = 51/86 (59%)

Query:    69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             T++++L   FS+FG+++E  ++ D   N+S+G+ +VT     +A+ A  +MNGK LDG+ 
Sbjct:    19 TSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAAREMNGKPLDGKP 78

Query:   129 IFVDNV-RPSRRYNTDASLARQPAQS 153
             I V+   +P  ++ T       P +S
Sbjct:    79 IKVEQATKP--QFETSGRRGPPPPRS 102


>UNIPROTKB|F2Z4H8 [details] [associations]
            symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=IEA] [GO:0008284 "positive regulation of
            cell proliferation" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
            GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
            EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
            UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
            Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
            NextBio:20899153 Uniprot:F2Z4H8
        Length = 380

 Score = 125 (49.1 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 23/60 (38%), Positives = 40/60 (66%)

Query:    70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
             T E +  AF+ FG++++A ++ D+   +SKGYG+V+   + +A+ A+V M G+ L GR I
Sbjct:   109 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 168

 Score = 106 (42.4 bits), Expect = 0.00040, P = 0.00040
 Identities = 22/68 (32%), Positives = 36/68 (52%)

Query:    62 CISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNG 121
             C  ++   T +++   FS FGQ+ E  +  +      KGY +V  ST E A  A+V +NG
Sbjct:   209 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 262

Query:   122 KLLDGRVI 129
               ++G V+
Sbjct:   263 TTIEGHVV 270


>RGD|2322083 [details] [associations]
            symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
            CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
            UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
            KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
        Length = 382

 Score = 125 (49.1 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 28/78 (35%), Positives = 45/78 (57%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS++G      +I D    +SKG+G+V   T E AQKA+++++GK +DG+V+ V
Sbjct:   213 EKLKKLFSEYGPTESVKVIRD-ATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCV 271

Query:   132 DNVRPSRRYNTDASLARQ 149
                R  ++    A L R+
Sbjct:   272 G--RAQKKIERLAELRRR 287

 Score = 117 (46.2 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 23/60 (38%), Positives = 40/60 (66%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + FS FG ++ A ++M++G+   KG+G V  S+ EEA KA+ +MNG+++  + + V
Sbjct:   316 EKLKEEFSLFGSISRAKVMMEVGQG--KGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHV 373


>RGD|69255 [details] [associations]
            symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
           species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
           mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
           evidence=IDA] [GO:0003688 "DNA replication origin binding"
           evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
           "cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
           evidence=ISO] [GO:0045892 "negative regulation of transcription,
           DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
           transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
           evidence=ISO] [GO:0003700 "sequence-specific DNA binding
           transcription factor activity" evidence=ISO] [GO:0043565
           "sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
           InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
           RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
           GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
           Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
           UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
           ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
           STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
           Uniprot:Q9Z0U8
        Length = 298

 Score = 123 (48.4 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S+ T+K+ L D F++FG+V + TI MD    RS+G+G++        +K L D     L
Sbjct:    95 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL-DQKEHRL 153

Query:   125 DGRVI 129
             DGRVI
Sbjct:   154 DGRVI 158


>UNIPROTKB|F1NY49 [details] [associations]
            symbol:374274 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
            GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
            IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
            Uniprot:F1NY49
        Length = 388

 Score = 125 (49.1 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 23/60 (38%), Positives = 40/60 (66%)

Query:    70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
             T E +  AF+ FG++++A ++ D+   +SKGYG+V+   + +A+ A+V M G+ L GR I
Sbjct:   125 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 184

 Score = 106 (42.4 bits), Expect = 0.00041, P = 0.00041
 Identities = 22/68 (32%), Positives = 36/68 (52%)

Query:    62 CISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNG 121
             C  ++   T +++   FS FGQ+ E  +  +      KGY +V  ST E A  A+V +NG
Sbjct:   225 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 278

Query:   122 KLLDGRVI 129
               ++G V+
Sbjct:   279 TTIEGHVV 286


>MGI|MGI:1343045 [details] [associations]
            symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
            binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
            selection" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
            splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
            regulation of mRNA splicing, via spliceosome" evidence=ISO]
            [GO:0051260 "protein homooligomerization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
            GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
            GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
            GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
            GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
            GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
            CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
            IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
            UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
            STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
            Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
            UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
            NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
        Length = 388

 Score = 125 (49.1 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 25/70 (35%), Positives = 43/70 (61%)

Query:    69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             T ++ L   F ++G++ E  ++ D   N+S+G+ +VT  +  +A+ A  DMNGK LDG+ 
Sbjct:    19 TNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKA 78

Query:   129 IFVDNV-RPS 137
             I V+   +PS
Sbjct:    79 IKVEQATKPS 88


>UNIPROTKB|F1NS94 [details] [associations]
            symbol:374274 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
            GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
            IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
            Uniprot:F1NS94
        Length = 389

 Score = 125 (49.1 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 23/60 (38%), Positives = 40/60 (66%)

Query:    70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
             T E +  AF+ FG++++A ++ D+   +SKGYG+V+   + +A+ A+V M G+ L GR I
Sbjct:   126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185

 Score = 106 (42.4 bits), Expect = 0.00041, P = 0.00041
 Identities = 22/68 (32%), Positives = 36/68 (52%)

Query:    62 CISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNG 121
             C  ++   T +++   FS FGQ+ E  +  +      KGY +V  ST E A  A+V +NG
Sbjct:   226 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279

Query:   122 KLLDGRVI 129
               ++G V+
Sbjct:   280 TTIEGHVV 287


>RGD|1310759 [details] [associations]
            symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
            RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
            GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
            OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
        Length = 630

 Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 28/66 (42%), Positives = 41/66 (62%)

Query:    74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
             L D FS FG +    ++ D  +N SKG+G+V   TEE A++A+  MNG LL+ R +FV  
Sbjct:   115 LYDTFSAFGNILSCKVVCD--ENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQ 172

Query:   134 VRPSRR 139
              + SR+
Sbjct:   173 FK-SRK 177

 Score = 125 (49.1 bits), Expect = 5.8e-07, P = 5.8e-07
 Identities = 25/54 (46%), Positives = 38/54 (70%)

Query:    78 FSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             F +FGQV    ++ D G  +SKG+G+V+    E+AQKA+ +MNGK L+G+ I+V
Sbjct:   211 FGRFGQVLSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263

 Score = 118 (46.6 bits), Expect = 3.3e-06, P = 3.3e-06
 Identities = 29/81 (35%), Positives = 45/81 (55%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T   ++ + G  RSKG+G+V  S+ EEA KA+ +MNG+++  + ++V
Sbjct:   308 ERLQKEFSPFGTITSTKVMTEGG--RSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYV 365

Query:   132 DNVRPSRRYNTDASLARQPAQ 152
                   R+    A L  Q  Q
Sbjct:   366 --ALAQRKEERQAHLTNQYIQ 384


>UNIPROTKB|E2RA41 [details] [associations]
            symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
            "cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
            regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
            cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
            GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
            EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
            ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
            GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
        Length = 392

 Score = 125 (49.1 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 23/60 (38%), Positives = 40/60 (66%)

Query:    70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
             T E +  AF+ FG++++A ++ D+   +SKGYG+V+   + +A+ A+V M G+ L GR I
Sbjct:   126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185

 Score = 106 (42.4 bits), Expect = 0.00042, P = 0.00042
 Identities = 22/68 (32%), Positives = 36/68 (52%)

Query:    62 CISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNG 121
             C  ++   T +++   FS FGQ+ E  +  +      KGY +V  ST E A  A+V +NG
Sbjct:   226 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279

Query:   122 KLLDGRVI 129
               ++G V+
Sbjct:   280 TTIEGHVV 287


>UNIPROTKB|F2Z5F9 [details] [associations]
            symbol:LOC100736782 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
            EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
            ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
            GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
        Length = 392

 Score = 125 (49.1 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 23/60 (38%), Positives = 40/60 (66%)

Query:    70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
             T E +  AF+ FG++++A ++ D+   +SKGYG+V+   + +A+ A+V M G+ L GR I
Sbjct:   126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185

 Score = 106 (42.4 bits), Expect = 0.00042, P = 0.00042
 Identities = 22/68 (32%), Positives = 36/68 (52%)

Query:    62 CISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNG 121
             C  ++   T +++   FS FGQ+ E  +  +      KGY +V  ST E A  A+V +NG
Sbjct:   226 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279

Query:   122 KLLDGRVI 129
               ++G V+
Sbjct:   280 TTIEGHVV 287


>MGI|MGI:107913 [details] [associations]
            symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
            protein-like 1" species:10090 "Mus musculus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
            [GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
            "positive regulation of cell proliferation" evidence=IMP]
            [GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
            "AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
            division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
            GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
            HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
            EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
            UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
            IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
            PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
            InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
            Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
        Length = 392

 Score = 125 (49.1 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 23/60 (38%), Positives = 40/60 (66%)

Query:    70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
             T E +  AF+ FG++++A ++ D+   +SKGYG+V+   + +A+ A+V M G+ L GR I
Sbjct:   126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185

 Score = 106 (42.4 bits), Expect = 0.00042, P = 0.00042
 Identities = 22/68 (32%), Positives = 36/68 (52%)

Query:    62 CISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNG 121
             C  ++   T +++   FS FGQ+ E  +  +      KGY +V  ST E A  A+V +NG
Sbjct:   226 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279

Query:   122 KLLDGRVI 129
               ++G V+
Sbjct:   280 TTIEGHVV 287


>RGD|1595845 [details] [associations]
            symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
            protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
            [GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
            "positive regulation of cell proliferation" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
            "AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
            division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
            GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
            HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
            EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
            STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
            InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
            Uniprot:Q5BJN3
        Length = 392

 Score = 125 (49.1 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 23/60 (38%), Positives = 40/60 (66%)

Query:    70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
             T E +  AF+ FG++++A ++ D+   +SKGYG+V+   + +A+ A+V M G+ L GR I
Sbjct:   126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185

 Score = 106 (42.4 bits), Expect = 0.00042, P = 0.00042
 Identities = 22/68 (32%), Positives = 36/68 (52%)

Query:    62 CISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNG 121
             C  ++   T +++   FS FGQ+ E  +  +      KGY +V  ST E A  A+V +NG
Sbjct:   226 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279

Query:   122 KLLDGRVI 129
               ++G V+
Sbjct:   280 TTIEGHVV 287


>TAIR|locus:2037370 [details] [associations]
            symbol:AT1G20880 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            IPI:IPI00530203 RefSeq:NP_001185049.1 RefSeq:NP_564127.1
            UniGene:At.26164 ProteinModelPortal:F4HUQ5 SMR:F4HUQ5 PRIDE:F4HUQ5
            EnsemblPlants:AT1G20880.1 EnsemblPlants:AT1G20880.2 GeneID:838681
            KEGG:ath:AT1G20880 OMA:MAYHSIP Uniprot:F4HUQ5
        Length = 274

 Score = 122 (48.0 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +++ T  E L   F Q+G + EA +I D    RSKGYG+VT    E A++A VD    ++
Sbjct:    31 LAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPT-PII 89

Query:   125 DGR 127
             DGR
Sbjct:    90 DGR 92


>UNIPROTKB|D4A2D2 [details] [associations]
            symbol:D4A2D2 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
            InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
            IPI:IPI00559583 ProteinModelPortal:D4A2D2
            Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
        Length = 262

 Score = 121 (47.7 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             ++F TT E L   F Q+G +TE  ++ D    RS+G+G+VT +T EE   A+     K+ 
Sbjct:    21 LTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV- 79

Query:   125 DGRVI 129
             DGRV+
Sbjct:    80 DGRVV 84


>UNIPROTKB|D3K5N7 [details] [associations]
            symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
            Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
            "positive regulation of translation" evidence=IEA] [GO:0019901
            "protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
            GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
            EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
            ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
            GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
        Length = 326

 Score = 123 (48.4 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 28/77 (36%), Positives = 41/77 (53%)

Query:    70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
             T+E L   FS  G++  A +I D     S GYG+V   T ++A++A+  +NG  L  + I
Sbjct:    32 TQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91

Query:   130 FVDNVRPSRRYNTDASL 146
              V   RPS     DA+L
Sbjct:    92 KVSYARPSSEVIKDANL 108

 Score = 112 (44.5 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query:    73 MLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             +L   F  FG VT   +I D   N+ KG+G+VT +  EEA  A+  +NG  L  +++ V
Sbjct:   259 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASLNGYRLGDKILQV 317


>UNIPROTKB|F1PA19 [details] [associations]
            symbol:HNRNPAB "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
            Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
        Length = 264

 Score = 121 (47.7 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S+ T+K+ L D F++FG+V + TI MD    RS+G+G++        +K L D     L
Sbjct:     7 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRL 65

Query:   125 DGRVI 129
             DGRVI
Sbjct:    66 DGRVI 70


>UNIPROTKB|E9PTS0 [details] [associations]
            symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
            Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
        Length = 331

 Score = 123 (48.4 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S+ T+K+ L D F++FG+V + TI MD    RS+G+G++        +K L D     L
Sbjct:    81 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL-DQKEHRL 139

Query:   125 DGRVI 129
             DGRVI
Sbjct:   140 DGRVI 144


>UNIPROTKB|Q9QX81 [details] [associations]
            symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0043565
            "sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
            EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
            GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
            Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
            PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
            GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
            RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
            Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
            Uniprot:Q9QX81
        Length = 332

 Score = 123 (48.4 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S+ T+K+ L D F++FG+V + TI MD    RS+G+G++        +K L D     L
Sbjct:    82 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL-DQKEHRL 140

Query:   125 DGRVI 129
             DGRVI
Sbjct:   141 DGRVI 145


>UNIPROTKB|D4ACJ8 [details] [associations]
            symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
            ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
        Length = 268

 Score = 121 (47.7 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF TT E L   F Q+G +T+  ++ D    RS+G+G+VT +T EE   A+     K+ 
Sbjct:    21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV- 79

Query:   125 DGRVI 129
             DGRV+
Sbjct:    80 DGRVV 84


>UNIPROTKB|F1NIB4 [details] [associations]
            symbol:HNRNPAB "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
            EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
            Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
        Length = 212

 Score = 118 (46.6 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 25/65 (38%), Positives = 40/65 (61%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S+ T+K+ L D F++FG+VT+ TI MD    RS+G+G++        +K L     +L 
Sbjct:     7 LSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQKEHRL- 65

Query:   125 DGRVI 129
             DGR+I
Sbjct:    66 DGRLI 70


>WB|WBGene00006321 [details] [associations]
            symbol:sup-12 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=IMP]
            [GO:0040012 "regulation of locomotion" evidence=IGI] [GO:0032956
            "regulation of actin cytoskeleton organization" evidence=IGI]
            [GO:0016607 "nuclear speck" evidence=IDA] [GO:0036002 "pre-mRNA
            binding" evidence=IPI] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0097157 "pre-mRNA
            intronic binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
            complex" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
            GO:GO:0040012 GO:GO:0030529 GO:GO:0032956 GO:GO:0097157
            GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
            GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
            KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
            ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
            MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
            UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
            NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
        Length = 248

 Score = 120 (47.3 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 27/81 (33%), Positives = 43/81 (53%)

Query:    67 FSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG 126
             + T+ + L + F QFG + EA +I D    +S+GYG+VT      A++A  D N  ++DG
Sbjct:    44 YHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPN-PIIDG 102

Query:   127 RVIFVDNVRPSRRYNTDASLA 147
             R   V+      +  T+  LA
Sbjct:   103 RKANVNLAYLGAKPRTNVQLA 123


>UNIPROTKB|O45189 [details] [associations]
            symbol:sup-12 "Protein SUP-12, isoform a" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
            Gene3D:3.30.70.330 GO:GO:0040012 GO:GO:0030529 GO:GO:0032956
            GO:GO:0097157 GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
            GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
            KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
            ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
            MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
            UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
            NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
        Length = 248

 Score = 120 (47.3 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 27/81 (33%), Positives = 43/81 (53%)

Query:    67 FSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG 126
             + T+ + L + F QFG + EA +I D    +S+GYG+VT      A++A  D N  ++DG
Sbjct:    44 YHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPN-PIIDG 102

Query:   127 RVIFVDNVRPSRRYNTDASLA 147
             R   V+      +  T+  LA
Sbjct:   103 RKANVNLAYLGAKPRTNVQLA 123


>UNIPROTKB|D6R9P3 [details] [associations]
            symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
            A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
            InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
            ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
            SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
            Uniprot:D6R9P3
        Length = 280

 Score = 121 (47.7 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S+ T+K+ L D F++FG+V + TI MD    RS+G+G++        +K L D     L
Sbjct:    77 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRL 135

Query:   125 DGRVI 129
             DGRVI
Sbjct:   136 DGRVI 140


>UNIPROTKB|D6RD18 [details] [associations]
            symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
            A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
            InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
            ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
            SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
            Uniprot:D6RD18
        Length = 283

 Score = 121 (47.7 bits), Expect = 3.9e-07, P = 3.9e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S+ T+K+ L D F++FG+V + TI MD    RS+G+G++        +K L D     L
Sbjct:    77 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRL 135

Query:   125 DGRVI 129
             DGRVI
Sbjct:   136 DGRVI 140


>UNIPROTKB|Q3ZC44 [details] [associations]
            symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
            GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
            Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
            EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
            RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
            Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
            NextBio:20870841 Uniprot:Q3ZC44
        Length = 285

 Score = 121 (47.7 bits), Expect = 4.0e-07, P = 4.0e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S+ T+K+ L D F++FG+V + TI MD    RS+G+G++        +K L D     L
Sbjct:    77 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVL-DQKEHRL 135

Query:   125 DGRVI 129
             DGRVI
Sbjct:   136 DGRVI 140


>WB|WBGene00003903 [details] [associations]
            symbol:pab-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0009792 "embryo development ending in
            birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
            GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
            GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
            RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
            STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
            EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
            EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
            UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
            OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
        Length = 692

 Score = 127 (49.8 bits), Expect = 4.0e-07, P = 4.0e-07
 Identities = 30/79 (37%), Positives = 44/79 (55%)

Query:    74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
             L D FS FG +T A +++D    RSKG+G+V     EEA  A+ DMN K++  + ++V  
Sbjct:   359 LRDHFSSFGTITSAKVMVD-ENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYV-- 415

Query:   134 VRPSRRYNTDASLARQPAQ 152
                 R+ +  A LA Q  Q
Sbjct:   416 ALAQRKEDRRAQLASQYMQ 434

 Score = 112 (44.5 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query:    76 DAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135
             D FS FG +    +  D  +  SKGYG+V   TE  AQ A+  +NG LL  + ++V   +
Sbjct:   163 DTFSLFGNILSCKVATD-DEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQ 221

Query:   136 P 136
             P
Sbjct:   222 P 222

 Score = 107 (42.7 bits), Expect = 0.00061, P = 0.00061
 Identities = 22/79 (27%), Positives = 45/79 (56%)

Query:    71 KEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIF 130
             +E L+  FS+FG++T A ++ D  + + KG+G+V  + ++ A +A+  +N  +L+G    
Sbjct:   251 QEKLSAMFSKFGEITSAVVMTD-AQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCK 309

Query:   131 VDNVRPSRRYNTDASLARQ 149
             +   R  ++    A L R+
Sbjct:   310 LSVCRAQKKSERSAELKRK 328


>UNIPROTKB|Q32P51 [details] [associations]
            symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
            A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
            transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
            GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
            EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
            IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
            UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
            IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
            PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
            Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
            KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
            HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
            HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
            OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
            Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
            Uniprot:Q32P51
        Length = 320

 Score = 122 (48.0 bits), Expect = 4.0e-07, P = 4.0e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF TT E L   F Q+G +T+  ++ D    RS+G+G+VT +T EE   A+     K+ 
Sbjct:    21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKV- 79

Query:   125 DGRVI 129
             DGRV+
Sbjct:    80 DGRVV 84


>UNIPROTKB|Q6IRQ4 [details] [associations]
            symbol:rbmx "RNA-binding motif protein, X chromosome"
            species:8355 "Xenopus laevis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
            InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
            RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
            ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
            Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
        Length = 370

 Score = 123 (48.4 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 29/87 (33%), Positives = 51/87 (58%)

Query:    69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             T ++ L   F ++G+V E  ++ D   N+S+G+ +VT  +  +A+ A  ++NGK LDG+ 
Sbjct:    19 TNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARELNGKALDGKP 78

Query:   129 IFVDNV-RPSRRYNTDASLARQPAQSP 154
             I V+   +PS  ++T +   R P  SP
Sbjct:    79 IKVEQATKPS--FSTPSR--RGPPTSP 101


>TAIR|locus:2122009 [details] [associations]
            symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
            immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
            evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
            [GO:0009073 "aromatic amino acid family biosynthetic process"
            evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
            [GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
            [GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
            "protein targeting to chloroplast" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
            conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
            stabilization" evidence=IMP] [GO:0006396 "RNA processing"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
            GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
            EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
            EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
            IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
            PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
            ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
            PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
            KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
            OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
            Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
            Uniprot:Q04836
        Length = 329

 Score = 122 (48.0 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 27/68 (39%), Positives = 42/68 (61%)

Query:    74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD- 132
             L   FS+ G+V EA ++ D    RS+G+G+VT S  +E  +A+  ++G+ L+GR I V+ 
Sbjct:   260 LEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNV 319

Query:   133 -NVRPSRR 139
                RP RR
Sbjct:   320 AEERPPRR 327

 Score = 107 (42.7 bits), Expect = 0.00020, P = 0.00020
 Identities = 26/88 (29%), Positives = 47/88 (53%)

Query:    64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
             ++++    + LA  F Q G V  A +I +   ++S+G+G+VT S+ +EA+ A+   N   
Sbjct:   156 NLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYD 215

Query:   124 LDGRVIFVDNVRPSRRYNTDASLARQPA 151
             L+GR++ V+   P       A    +PA
Sbjct:   216 LNGRLLTVNKAAPRGSRPERAPRVYEPA 243


>UNIPROTKB|Q4VXU2 [details] [associations]
            symbol:PABPC1L "Polyadenylate-binding protein 1-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
            HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
            UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
            IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
            PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
            Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
            GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
            PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
            GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
            CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
        Length = 614

 Score = 126 (49.4 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 29/83 (34%), Positives = 45/83 (54%)

Query:    74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
             L D FSQFG++    ++ D     S+ +G+V     EEAQKA+V MNGK + GR+++   
Sbjct:   207 LQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAG- 264

Query:   134 VRPSRRYNTDASLARQPAQSPEE 156
              R  +R      L R+  Q  ++
Sbjct:   265 -RAQKRVERQNELKRRFEQMKQD 286

 Score = 119 (46.9 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 28/72 (38%), Positives = 42/72 (58%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    +  D  ++ S+G+G+V   T E AQ+A+  MNG LL+ R
Sbjct:   109 SIDNKALYDTFSTFGNILSCKVACD--EHGSRGFGFVHFETHEAAQQAINTMNGMLLNDR 166

Query:   128 VIFVDNVRPSRR 139
              +FV + + SRR
Sbjct:   167 KVFVGHFK-SRR 177

 Score = 112 (44.5 bits), Expect = 6.9e-05, P = 6.9e-05
 Identities = 28/85 (32%), Positives = 46/85 (54%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L   FS +G +T A ++ + G   SKG+G+V  S+ EEA KA+ +MNG+++  +
Sbjct:   304 SIDDDKLRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361

Query:   128 VIFVDNVRPSRRYNTDASLARQPAQ 152
              ++V      R+    A L  Q  Q
Sbjct:   362 PLYV--ALAQRKEERKAILTNQYMQ 384


>UNIPROTKB|F1SNK9 [details] [associations]
            symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
            EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
        Length = 400

 Score = 113 (44.8 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query:    71 KEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIF 130
             + +L   F  FG VT   +I D   N+ KG+G+VT +  +EA  A+  +NG  L  RV+ 
Sbjct:   330 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 389

Query:   131 V 131
             V
Sbjct:   390 V 390

 Score = 39 (18.8 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query:    14 QFNSYFTEDSL 24
             QF  YFT+ SL
Sbjct:    89 QFREYFTDSSL 99


>CGD|CAL0001392 [details] [associations]
            symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
            "cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
            evidence=IEA] [GO:0006446 "regulation of translational initiation"
            evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
            poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
            GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
            GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
            RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
            SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
            KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
        Length = 629

 Score = 126 (49.4 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 23/60 (38%), Positives = 41/60 (68%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L + F  FG +T A +++D    +SKG+G+V  +T EEA KA+ +MN ++++G+ ++V
Sbjct:   350 EKLEEEFKPFGTITSAKVMVDEA-GKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYV 408


>UNIPROTKB|F8VXY0 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
            Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
            Uniprot:F8VXY0
        Length = 304

 Score = 121 (47.7 bits), Expect = 4.6e-07, P = 4.6e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF TT E L   F Q+G +T+  ++ D    RS+G+G+VT +T EE   A+     K+ 
Sbjct:    21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV- 79

Query:   125 DGRVI 129
             DGRV+
Sbjct:    80 DGRVV 84


>WB|WBGene00003902 [details] [associations]
            symbol:pab-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0040010 "positive regulation of growth
            rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
            evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
            "receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
            evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
            "P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
            body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
            GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
            GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
            GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
            NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
            ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
            MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
            EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
            EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
            EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
            WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
            ArrayExpress:Q9U302 Uniprot:Q9U302
        Length = 646

 Score = 126 (49.4 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 29/75 (38%), Positives = 41/75 (54%)

Query:    76 DAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135
             D FS FG +    + +D     SKGYG+V   TEE AQ A+  +NG LL G+ +FV   +
Sbjct:   138 DTFSLFGNILSCKVAID-EDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQ 196

Query:   136 PSRRYNTD-ASLARQ 149
             P  + N +    A+Q
Sbjct:   197 PRAQRNRELGETAKQ 211

 Score = 106 (42.4 bits), Expect = 0.00085, P = 0.00084
 Identities = 26/79 (32%), Positives = 42/79 (53%)

Query:    74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
             L   F  +G +T A ++ D    RSKG+G+V     EEA  A+ +MN K++  + ++V  
Sbjct:   333 LKKQFESYGNITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAI 391

Query:   134 VRPSRRYNTDASLARQPAQ 152
              +  R+ +  A LA Q  Q
Sbjct:   392 AQ--RKEDRRAQLASQYMQ 408


>UNIPROTKB|Q29RT0 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
            mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
            [GO:0070062 "extracellular vesicular exosome" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
            of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
            euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
            response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
            protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
            EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
            RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
            SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
            KEGG:bta:617969 KEGG:bta:782306 CTD:27288
            GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
            NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
        Length = 396

 Score = 123 (48.4 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 22/67 (32%), Positives = 43/67 (64%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             ++  T ++ L   F ++G+++E  ++ D   N+S+G+ ++T  +  +A+ A+ DMNGK L
Sbjct:    15 LNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSL 74

Query:   125 DGRVIFV 131
             DG+ I V
Sbjct:    75 DGKAIKV 81


>DICTYBASE|DDB_G0292698 [details] [associations]
            symbol:DDB_G0292698 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0292698 GO:GO:0000166
            EMBL:AAFI02000194 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG297815
            RefSeq:XP_629578.1 ProteinModelPortal:Q54CU2 STRING:Q54CU2
            PRIDE:Q54CU2 EnsemblProtists:DDB0233351 GeneID:8628839
            KEGG:ddi:DDB_G0292698 InParanoid:Q54CU2 OMA:DPNTKES Uniprot:Q54CU2
        Length = 306

 Score = 121 (47.7 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 25/70 (35%), Positives = 43/70 (61%)

Query:    70 TKEM-LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             T+E  L D F+  G+V + TI++D     S+G+G+VT S+ +EAQ A+  ++   +DG  
Sbjct:    82 TRESDLRDTFASIGKVIDCTILLDPNTKESRGFGFVTYSSGDEAQDAIQRLDSTKIDGNT 141

Query:   129 IFVDNVRPSR 138
             I V+  + S+
Sbjct:   142 IRVEKSKRSK 151


>UNIPROTKB|F8VSB5 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
            Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
            Uniprot:F8VSB5
        Length = 306

 Score = 121 (47.7 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF TT E L   F Q+G +T+  ++ D    RS+G+G+VT +T EE   A+     K+ 
Sbjct:    21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV- 79

Query:   125 DGRVI 129
             DGRV+
Sbjct:    80 DGRVV 84


>UNIPROTKB|F8VRQ1 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
            Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
            Uniprot:F8VRQ1
        Length = 307

 Score = 121 (47.7 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF TT E L   F Q+G +T+  ++ D    RS+G+G+VT +T EE   A+     K+ 
Sbjct:    21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV- 79

Query:   125 DGRVI 129
             DGRV+
Sbjct:    80 DGRVV 84


>POMBASE|SPAC57A7.04c [details] [associations]
            symbol:pabp "mRNA export shuttling protein"
            species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
            translational initiation" evidence=NAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0006446 "regulation of translational initiation"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
            GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
            GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
            RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
            IntAct:P31209 STRING:P31209 PRIDE:P31209
            EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
            OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
        Length = 653

 Score = 126 (49.4 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 26/60 (43%), Positives = 40/60 (66%)

Query:    72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             E L   FS FG +T A I+ D  + +SKG+G+V  +T EEA KA+ +MN ++L G+ ++V
Sbjct:   378 ERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436

 Score = 115 (45.5 bits), Expect = 7.2e-06, P = 7.2e-06
 Identities = 23/83 (27%), Positives = 49/83 (59%)

Query:    70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
             T++  +D F QFG++T  +++ D   ++ +G+G+V  +  E AQKA+ ++N K   G+ +
Sbjct:   273 TEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKL 331

Query:   130 FVDNVRPSRRYNTDASLARQPAQ 152
             +V   R  +++  +  L ++  Q
Sbjct:   332 YVG--RAQKKHEREEELRKRYEQ 352


>UNIPROTKB|D6RBQ9 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
            InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
            ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
            ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
        Length = 155

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 25/65 (38%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S+ TTK+ L D FS+FG+V + T+ +D    RS+G+G+V     E   K + D     L
Sbjct:    85 LSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM-DQKEHKL 143

Query:   125 DGRVI 129
             +G+VI
Sbjct:   144 NGKVI 148


>UNIPROTKB|D6RF44 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
            HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
            ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
            ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
        Length = 112

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 25/65 (38%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +S+ TTK+ L D FS+FG+V + T+ +D    RS+G+G+V     E   K + D     L
Sbjct:     6 LSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM-DQKEHKL 64

Query:   125 DGRVI 129
             +G+VI
Sbjct:    65 NGKVI 69


>UNIPROTKB|H0YEQ8 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
            Ensembl:ENST00000470443 Uniprot:H0YEQ8
        Length = 112

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L D FS FG +    ++ D  +N SKGY +V   T+E A KA+  MNG LL+ R
Sbjct:    53 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 110

Query:   128 VI 129
              +
Sbjct:   111 KV 112


>TAIR|locus:2009036 [details] [associations]
            symbol:PAB1 "poly(A) binding protein 1" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
            initiation factor activity" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
            ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
            EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
            OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
        Length = 407

 Score = 123 (48.4 bits), Expect = 4.9e-07, P = 4.9e-07
 Identities = 30/92 (32%), Positives = 47/92 (51%)

Query:    66 SFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD 125
             S   TK  L + FS+FG +T   +++      SKG G+V  ST EEA KA++ MNGK++ 
Sbjct:   233 SVDNTK--LEELFSEFGTITSCKVMVH-SNGISKGVGFVEFSTSEEASKAMLKMNGKMVG 289

Query:   126 GRVIFVDNVRPSRRYNTDASLA-RQPAQSPEE 156
              + I+V   +   ++          P  SP +
Sbjct:   290 NKPIYVSLAQCKEQHKLHLQTQFNNPPPSPHQ 321


>TAIR|locus:2012161 [details] [associations]
            symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
            evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
            biosynthetic process" evidence=RCA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
            EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
            RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
            UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
            SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
            ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
            GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
            OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
        Length = 671

 Score = 126 (49.4 bits), Expect = 4.9e-07, P = 4.9e-07
 Identities = 31/74 (41%), Positives = 44/74 (59%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             + T   L +AF+Q GQV    +  D+   RS GYGYV  +T ++A +AL ++N   L+GR
Sbjct:    55 TVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGR 114

Query:   128 VIFVD-NVR-PSRR 139
              I V  +VR PS R
Sbjct:   115 AIRVMYSVRDPSLR 128

 Score = 119 (46.9 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 36/117 (30%), Positives = 61/117 (52%)

Query:    40 LHCIVRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSK 99
             +H + R  S   ++  NV + + +S S S   E L   F +FG VT + +IM  G+ +SK
Sbjct:   209 VHKLQRDPSGEKVKFTNV-YVKNLSESLSD--EELNKVFGEFG-VTTSCVIMRDGEGKSK 264

Query:   100 GYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSRRYNTDASLARQPAQSPEE 156
             G+G+V     ++A +A+  +NGK  D +  FV   +      T+  L ++  QS +E
Sbjct:   265 GFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETE--LKQKFEQSLKE 319

 Score = 115 (45.5 bits), Expect = 7.4e-06, P = 7.4e-06
 Identities = 28/85 (32%), Positives = 47/85 (55%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S T + L + F+ FG +T   ++ D     S+G G+V  ST EEA +A+ +MNGK++  +
Sbjct:   337 SVTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTK 395

Query:   128 VIFVDNVRPSRRYNTDASLARQPAQ 152
              ++V      R+ +  A L  Q +Q
Sbjct:   396 PLYV--ALAQRKEDRKARLQAQFSQ 418

 Score = 108 (43.1 bits), Expect = 0.00042, P = 0.00042
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query:    68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
             S   + L + FS FG +    + +D    +SKGYG+V   T+E AQ A+  +NG LL+ +
Sbjct:   143 SIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDK 201

Query:   128 VIFV 131
              ++V
Sbjct:   202 QVYV 205


>UNIPROTKB|D4A7H4 [details] [associations]
            symbol:Tia1 "Protein Tia1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            IPI:IPI00214634 ProteinModelPortal:D4A7H4
            Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
        Length = 281

 Score = 120 (47.3 bits), Expect = 5.0e-07, P = 5.0e-07
 Identities = 23/61 (37%), Positives = 42/61 (68%)

Query:    69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             TT+++ A AF+ FG++++A ++ D+   +SKGYG+V+   + +A+ A+  M G+ L GR 
Sbjct:   103 TTEDIKA-AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 161

Query:   129 I 129
             I
Sbjct:   162 I 162


>UNIPROTKB|P09867 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
            GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
            eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
            HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
            Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
            RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
            SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
            GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
            OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
        Length = 320

 Score = 121 (47.7 bits), Expect = 5.2e-07, P = 5.2e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF TT E L   F Q+G +T+  ++ D    RS+G+G+VT +T EE   A+     K+ 
Sbjct:    21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV- 79

Query:   125 DGRVI 129
             DGRV+
Sbjct:    80 DGRVV 84


>UNIPROTKB|F8W6I7 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
            Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
            Uniprot:F8W6I7
        Length = 320

 Score = 121 (47.7 bits), Expect = 5.2e-07, P = 5.2e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF TT E L   F Q+G +T+  ++ D    RS+G+G+VT +T EE   A+     K+ 
Sbjct:    21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV- 79

Query:   125 DGRVI 129
             DGRV+
Sbjct:    80 DGRVV 84


>UNIPROTKB|Q06A94 [details] [associations]
            symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
            eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
            HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
            Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
            EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
            SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
            Uniprot:Q06A94
        Length = 320

 Score = 121 (47.7 bits), Expect = 5.2e-07, P = 5.2e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF TT E L   F Q+G +T+  ++ D    RS+G+G+VT +T EE   A+     K+ 
Sbjct:    21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV- 79

Query:   125 DGRVI 129
             DGRV+
Sbjct:    80 DGRVV 84


>UNIPROTKB|A5A6H4 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
            complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
            OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
            GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
            EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
            RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
            UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
            Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
            GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
            CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
            Uniprot:A5A6H4
        Length = 320

 Score = 121 (47.7 bits), Expect = 5.2e-07, P = 5.2e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF TT E L   F Q+G +T+  ++ D    RS+G+G+VT +T EE   A+     K+ 
Sbjct:    21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV- 79

Query:   125 DGRVI 129
             DGRV+
Sbjct:    80 DGRVV 84


>MGI|MGI:104820 [details] [associations]
            symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
            spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
            [GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
            import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
            GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
            GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
            eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
            HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
            Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
            EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
            EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
            EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
            EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
            IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
            UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
            IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
            PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
            UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
            Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
            GermOnline:ENSMUSG00000058922 Uniprot:P49312
        Length = 320

 Score = 121 (47.7 bits), Expect = 5.2e-07, P = 5.2e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF TT E L   F Q+G +T+  ++ D    RS+G+G+VT +T EE   A+     K+ 
Sbjct:    21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV- 79

Query:   125 DGRVI 129
             DGRV+
Sbjct:    80 DGRVV 84


>RGD|69234 [details] [associations]
            symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
           species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
           evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
           spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
           evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
           [GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
           evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
           evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
           "cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
           evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
           [GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
           "ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
           "intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
           transport" evidence=IEA] [GO:0051168 "nuclear export"
           evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
           [GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
           InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
           SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
           GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
           GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
           GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
           HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
           CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
           UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
           STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
           KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
           Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
        Length = 320

 Score = 121 (47.7 bits), Expect = 5.2e-07, P = 5.2e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF TT E L   F Q+G +T+  ++ D    RS+G+G+VT +T EE   A+     K+ 
Sbjct:    21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV- 79

Query:   125 DGRVI 129
             DGRV+
Sbjct:    80 DGRVV 84


>UNIPROTKB|Q5I0M7 [details] [associations]
            symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
            UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
            Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
        Length = 320

 Score = 121 (47.7 bits), Expect = 5.2e-07, P = 5.2e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:    65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
             +SF TT E L   F Q+G +T+  ++ D    RS+G+G+VT +T EE   A+     K+ 
Sbjct:    21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV- 79

Query:   125 DGRVI 129
             DGRV+
Sbjct:    80 DGRVV 84


>UNIPROTKB|C9JTN7 [details] [associations]
            symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
            EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
            ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
            Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
            Uniprot:C9JTN7
        Length = 285

 Score = 120 (47.3 bits), Expect = 5.2e-07, P = 5.2e-07
 Identities = 23/61 (37%), Positives = 42/61 (68%)

Query:    69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
             TT+++ A AF+ FG++++A ++ D+   +SKGYG+V+   + +A+ A+  M G+ L GR 
Sbjct:   107 TTEDIKA-AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 165

Query:   129 I 129
             I
Sbjct:   166 I 166


>UNIPROTKB|F1N9I5 [details] [associations]
            symbol:ELAVL1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
            "positive regulation of translation" evidence=IEA] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
            EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
            Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
        Length = 326

 Score = 121 (47.7 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 28/77 (36%), Positives = 41/77 (53%)

Query:    70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
             T++ L   FS  G+V  A +I D     S GYG+V   T ++A++A+  +NG  L  + I
Sbjct:    32 TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91

Query:   130 FVDNVRPSRRYNTDASL 146
              V   RPS     DA+L
Sbjct:    92 KVSYARPSSEVIKDANL 108

 Score = 111 (44.1 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query:    73 MLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             +L   F  FG VT   +I D   N+ KG+G+VT +  EEA  A+  +NG  L  +++ V
Sbjct:   259 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQV 317


>UNIPROTKB|Q3ZCE2 [details] [associations]
            symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
            Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
            [GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
            HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
            OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
            OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
            IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
            STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
            KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
        Length = 326

 Score = 121 (47.7 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 28/77 (36%), Positives = 41/77 (53%)

Query:    70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
             T++ L   FS  G+V  A +I D     S GYG+V   T ++A++A+  +NG  L  + I
Sbjct:    32 TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91

Query:   130 FVDNVRPSRRYNTDASL 146
              V   RPS     DA+L
Sbjct:    92 KVSYARPSSEVIKDANL 108

 Score = 111 (44.1 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query:    73 MLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
             +L   F  FG VT   +I D   N+ KG+G+VT +  EEA  A+  +NG  L  +++ V
Sbjct:   259 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQV 317

WARNING:  HSPs involving 415 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.129   0.361    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      157       157   0.00079  106 3  11 22  0.48    31
                                                     30  0.42    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  665
  No. of states in DFA:  567 (60 KB)
  Total size of DFA:  126 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.66u 0.27s 14.93t   Elapsed:  00:00:01
  Total cpu time:  14.67u 0.27s 14.94t   Elapsed:  00:00:01
  Start:  Fri May 10 06:51:00 2013   End:  Fri May 10 06:51:01 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT2G27330 AT2G27330 AT2G27330	protein from Arabidopsis thaliana	7.7e-16
BLAST match view associations BLAST with AT5G06210 AT5G06210 AT5G06210	protein from Arabidopsis thaliana	1.6e-15
BLAST match view associations BLAST with AT2G37510 AT2G37510 AT2G37510	protein from Arabidopsis thaliana	3.3e-15
BLAST match view associations BLAST with AT1G73530 AT1G73530 AT1G73530	protein from Arabidopsis thaliana	1.0e-13
BLAST match view associations BLAST with AT5G54580 AT5G54580 AT5G54580	protein from Arabidopsis thaliana	1.5e-12
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Xenopus (Silurana) tropicalis	2.4e-12
BLAST match view associations BLAST with AT3G46020 AT3G46020 AT3G46020	protein from Arabidopsis thaliana	2.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.4e-12
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	8.2e-12
BLAST match view associations BLAST with zgc:112425 zgc:112425 zgc:112425	gene_product from Danio rerio	1.0e-11
BLAST match view associations BLAST with cirbp-b cirbp-b cirbp-b Cold-inducible RNA-binding protein B	protein from Xenopus laevis	1.7e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Bos taurus	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Sus scrofa	3.5e-11
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Cricetulus griseus	3.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Pongo abelii	3.5e-11
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	protein from Mus musculus	3.5e-11
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	gene from Rattus norvegicus	3.5e-11
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	4.5e-11
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	4.5e-11
BLAST match view associations BLAST with F6RBQ9 F6RBQ9 F6RBQ9 Uncharacterized protein	protein from Bos taurus	5.8e-11
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Putative RNA-binding protein 3	protein from Homo sapiens	5.8e-11
BLAST match view associations BLAST with CCR1 CCR1 CCR1 AT4G39260	protein from Arabidopsis thaliana	5.8e-11
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	7.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP cDNA FLJ52850, moderately similar to Cold-inducible RNA-binding protein	protein from Homo sapiens	7.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	9.3e-11
BLAST match view associations BLAST with ORRM1 ORRM1 ORRM1 AT3G20930	protein from Arabidopsis thaliana	1.1e-10
BLAST match view associations BLAST with cirbp-a cirbp-a cirbp-a Cold-inducible RNA-binding protein A	protein from Xenopus laevis	1.2e-10
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif (RNP1, RRM) protein 3	gene from Rattus norvegicus	1.2e-10
BLAST match view associations BLAST with ATRZ-1A ATRZ-1A ATRZ-1A AT3G26420	protein from Arabidopsis thaliana	1.5e-10
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	2.0e-10
BLAST match view associations BLAST with AT4G20030 AT4G20030 AT4G20030	protein from Arabidopsis thaliana	2.5e-10
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	3.2e-10
BLAST match view associations BLAST with I3LQ36 I3LQ36 I3LQ36 Uncharacterized protein	protein from Sus scrofa	3.2e-10
BLAST match view associations BLAST with AT5G19030 AT5G19030 AT5G19030	protein from Arabidopsis thaliana	4.1e-10
BLAST match view associations BLAST with blt801 blt801 blt801 Glycine-rich RNA-binding protein blt801	protein from Hordeum vulgare	5.2e-10
BLAST match view associations BLAST with MCA1010 MCA1010 MCA1010 RNA-binding protein	protein from Methylococcus capsulatus str. Bath	5.2e-10
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Gallus gallus	5.7e-10
BLAST match view associations BLAST with AT4G13860 AT4G13860 AT4G13860	protein from Arabidopsis thaliana	6.6e-10
BLAST match view associations BLAST with GSU1324 GSU1324 GSU1324 RNA-binding protein	protein from Geobacter sulfurreducens PCA	8.4e-10
BLAST match view associations BLAST with GSU_1324 GSU_1324 GSU_1324 RNA-binding protein	protein from Geobacter sulfurreducens PCA	8.4e-10
BLAST match view associations BLAST with CG11266 CG11266 CG11266	protein from Drosophila melanogaster	1.1e-09
BLAST match view associations BLAST with AT5G59860 AT5G59860 AT5G59860	protein from Arabidopsis thaliana	1.4e-09
BLAST match view associations BLAST with RBM39 RBM39 RBM39 RNA-binding region (RNP1, RRM) containing 2, isoform CRA_b	protein from Homo sapiens	1.7e-09
BLAST match view associations BLAST with GR-RBP2 GR-RBP2 GR-RBP2 AT4G13850	protein from Arabidopsis thaliana	1.8e-09
BLAST match view associations BLAST with RBM39 RBM39 RBM39 RNA-binding region (RNP1, RRM) containing 2, isoform CRA_f	protein from Homo sapiens	2.2e-09
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	2.2e-09
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 Glycine-rich RNA-binding protein	protein from Coxiella burnetii RSA 493	2.2e-09
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 nucleic acid binding domain protein	protein from Coxiella burnetii RSA 493	2.2e-09
BLAST match view associations BLAST with Rbm39 Rbm39 Rbm39 RNA binding motif protein 39	gene from Rattus norvegicus	3.1e-09
BLAST match view associations BLAST with RBM39 RBM39 RBM39 Uncharacterized protein	protein from Bos taurus	3.1e-09
BLAST match view associations BLAST with RBM39 RBM39 RBM39 Uncharacterized protein	protein from Sus scrofa	3.1e-09
BLAST match view associations BLAST with LOC100858247 LOC100858247 LOC100858247 Uncharacterized protein	protein from Gallus gallus	3.2e-09
BLAST match view associations BLAST with RBM39 RBM39 RBM39 Uncharacterized protein	protein from Canis lupus familiaris	3.2e-09
BLAST match view associations BLAST with RBM39 RBM39 RBM39 RNA-binding protein 39	protein from Homo sapiens	3.2e-09
BLAST match view associations BLAST with Rbm39 Rbm39 Rbm39 RNA binding motif protein 39	protein from Mus musculus	3.2e-09
BLAST match view associations BLAST with MGG_01268 MGG_01268 MGG_01268 Nuclear localization sequence binding protein	protein from Magnaporthe oryzae 70-15	3.5e-09
BLAST match view associations BLAST with LOC100514264 LOC100514264 LOC100514264 Uncharacterized protein	protein from Sus scrofa	3.6e-09
BLAST match view associations BLAST with PABPC3 PABPC3 PABPC3 Polyadenylate-binding protein 3	protein from Homo sapiens	4.6e-09
BLAST match view associations BLAST with rbm39a rbm39a rbm39a RNA binding motif protein 39a	gene_product from Danio rerio	5.1e-09
BLAST match view associations BLAST with epabp-b epabp-b epabp-b Embryonic polyadenylate-binding protein B	protein from Xenopus laevis	5.3e-09
BLAST match view associations BLAST with PABPC5 PABPC5 PABPC5 Polyadenylate-binding protein 5	protein from Homo sapiens	6.6e-09
BLAST match view associations BLAST with epabp-a epabp-a epabp-a Embryonic polyadenylate-binding protein A	protein from Xenopus laevis	6.8e-09
BLAST match view associations BLAST with RBM23 RBM23 RBM23 Probable RNA-binding protein 23	protein from Homo sapiens	7.6e-09
BLAST match view associations BLAST with GR-RBP6 GR-RBP6 GR-RBP6 AT1G18630	protein from Arabidopsis thaliana	7.6e-09
BLAST match view associations BLAST with GRP7 GRP7 GRP7 AT2G21660	protein from Arabidopsis thaliana	7.6e-09
BLAST match view associations BLAST with RBM23 RBM23 RBM23 Probable RNA-binding protein 23	protein from Homo sapiens	8.0e-09
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Canis lupus familiaris	8.7e-09
BLAST match view associations BLAST with GR-RBP5 GR-RBP5 GR-RBP5 AT1G74230	protein from Arabidopsis thaliana	8.9e-09
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	9.1e-09
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Canis lupus familiaris	1.0e-08
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	1.1e-08
BLAST match view associations BLAST with PABPC3 PABPC3 PABPC3 Polyadenylate-binding protein 3	protein from Homo sapiens	1.1e-08
BLAST match view associations BLAST with epabp epabp epabp Embryonic polyadenylate-binding protein	protein from Xenopus (Silurana) tropicalis	1.1e-08
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Sus scrofa	1.1e-08
BLAST match view associations BLAST with AT1G33470 AT1G33470 AT1G33470	protein from Arabidopsis thaliana	1.1e-08
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	1.1e-08
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Sus scrofa	1.4e-08
BLAST match view associations BLAST with MGG_11418 MGG_11418 MGG_11418 Nucleic acid-binding protein	protein from Magnaporthe oryzae 70-15	1.4e-08
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Canis lupus familiaris	1.5e-08
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 PABPC4 protein	protein from Bos taurus	1.5e-08
BLAST match view associations BLAST with AT2G37220 AT2G37220 AT2G37220	protein from Arabidopsis thaliana	1.5e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.6e-08
BLAST match view associations BLAST with PSRP2 PSRP2 PSRP2 AT3G52150	protein from Arabidopsis thaliana	1.7e-08
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Bos taurus	1.8e-08
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Homo sapiens	2.0e-08