BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036791
(157 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|351724633|ref|NP_001238088.1| uncharacterized protein LOC100527061 [Glycine max]
gi|255631468|gb|ACU16101.1| unknown [Glycine max]
Length = 113
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 58/75 (77%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++FSTT+E LA AFSQ+G V +A II++ KNRSKG+GYV + EEEA KA +DMNGK+
Sbjct: 39 GLAFSTTEEELAKAFSQYGSVLKANIILNKAKNRSKGFGYVIFAKEEEACKAQIDMNGKI 98
Query: 124 LDGRVIFVDNVRPSR 138
L GRVI+VD P++
Sbjct: 99 LHGRVIYVDVQLPNK 113
>gi|359482021|ref|XP_002276063.2| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Vitis vinifera]
gi|297740158|emb|CBI30340.3| unnamed protein product [Vitis vinifera]
Length = 133
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 63/89 (70%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF TT++ L++ FSQ+GQV EA I+MD +RSKG+G+VT ++EEEAQKA +M+GK
Sbjct: 40 GLSFYTTEKGLSEHFSQYGQVVEAKIVMDRVSDRSKGFGFVTFASEEEAQKARTEMDGKE 99
Query: 124 LDGRVIFVDNVRPSRRYNTDASLARQPAQ 152
L+GR IFVD +P + +AR P +
Sbjct: 100 LNGRTIFVDYAKPRADFGGGMPIARGPPE 128
>gi|224091949|ref|XP_002309412.1| predicted protein [Populus trichocarpa]
gi|222855388|gb|EEE92935.1| predicted protein [Populus trichocarpa]
Length = 139
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 70/112 (62%)
Query: 41 HCIVRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKG 100
+ P++ I Q + +S TT+ L++AFSQ+GQV EA I+MD +RSKG
Sbjct: 22 KLVAAPTALFIWQRGITTKLFVGGLSIYTTENGLSEAFSQYGQVVEAKIVMDRALDRSKG 81
Query: 101 YGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSRRYNTDASLARQPAQ 152
+G+VT ++E+EAQKAL +MNGK L+GRVI+VD + + +AR P +
Sbjct: 82 FGFVTYASEDEAQKALDEMNGKALNGRVIYVDYAKLKTNFGGGIPIARGPPE 133
>gi|255565709|ref|XP_002523844.1| Cold-inducible RNA-binding protein, putative [Ricinus communis]
gi|223536932|gb|EEF38570.1| Cold-inducible RNA-binding protein, putative [Ricinus communis]
Length = 121
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
Query: 45 RPSSDLIMQLVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYG 102
+P++ L + S R +SFS+T E L +AFS+FG++ E II D +R KGY
Sbjct: 19 KPNTPLFFSTNSASSSRLFVKGISFSSTTESLTEAFSKFGEIVEVNIIKDKAMDRPKGYA 78
Query: 103 YVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134
YVT +TE EA+KAL +MNGK++DGR +FVDNV
Sbjct: 79 YVTFATENEAKKALTEMNGKVIDGRPVFVDNV 110
>gi|388502672|gb|AFK39402.1| unknown [Medicago truncatula]
Length = 140
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 69/103 (66%), Gaps = 7/103 (6%)
Query: 57 VSFWRCIS-------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTE 109
++F R I+ +SF TT++ L+DAFS +GQV EA +I D +SKGYG+VT +++
Sbjct: 24 LTFRRAIAFKLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQ 83
Query: 110 EEAQKALVDMNGKLLDGRVIFVDNVRPSRRYNTDASLARQPAQ 152
+EA+KA+ +MN K L+GRV+FVD +P + + +AR P +
Sbjct: 84 DEAEKAITEMNEKALNGRVVFVDYAKPDTKRSMGMPIARGPPE 126
>gi|255579369|ref|XP_002530529.1| RNA binding protein, putative [Ricinus communis]
gi|223529933|gb|EEF31861.1| RNA binding protein, putative [Ricinus communis]
Length = 127
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 62/89 (69%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF TT + L +AFSQ+GQV EATI+ D +RSKG+G+VT ++E+EA AL +MNGK
Sbjct: 37 GLSFYTTDKGLTEAFSQYGQVVEATIVSDRVLDRSKGFGFVTFASEDEAHNALSEMNGKT 96
Query: 124 LDGRVIFVDNVRPSRRYNTDASLARQPAQ 152
L+GRVI+VD +P + +AR P +
Sbjct: 97 LNGRVIYVDYAKPRTDSRNEVPIARGPPE 125
>gi|359479548|ref|XP_003632289.1| PREDICTED: cold-inducible RNA-binding protein-like [Vitis vinifera]
gi|296084877|emb|CBI28286.3| unnamed protein product [Vitis vinifera]
Length = 111
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 69/112 (61%), Gaps = 13/112 (11%)
Query: 22 DSLLSFSS-KPYQVVNYFSLHCIVRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQ 80
D+ L FSS PY + SS LI S +SFSTT++ LA+AFSQ
Sbjct: 9 DTFLRFSSLNPYLL------------SSQLIFCRGIASTLFVKGISFSTTEKTLAEAFSQ 56
Query: 81 FGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132
FG+V EA IIMD K R KG+ YVT + E+EA+KAL +MNGK++DGR + VD
Sbjct: 57 FGEVVEAKIIMDKRKLRPKGFAYVTFTREDEAEKALTEMNGKVVDGRTVLVD 108
>gi|357457753|ref|XP_003599157.1| Cold-inducible RNA-binding protein [Medicago truncatula]
gi|355488205|gb|AES69408.1| Cold-inducible RNA-binding protein [Medicago truncatula]
Length = 134
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 59/78 (75%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++FSTT+E LA+AFSQ+G V +A I+++ K R KG+GYVT + EEEA+KA + MNGK+
Sbjct: 38 GLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKI 97
Query: 124 LDGRVIFVDNVRPSRRYN 141
L GRV++VD P+ + N
Sbjct: 98 LHGRVLYVDMDPPNEQKN 115
>gi|351725383|ref|NP_001238370.1| uncharacterized protein LOC100527079 [Glycine max]
gi|255631508|gb|ACU16121.1| unknown [Glycine max]
Length = 130
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 76/121 (62%), Gaps = 7/121 (5%)
Query: 39 SLHCIVRPSSDLIMQLVNVSFWRCIS-------VSFSTTKEMLADAFSQFGQVTEATIIM 91
++ I+ + + I+ +SF R I+ +SF TT+ L++AFS +GQV EA I+
Sbjct: 3 AVRKIIEVNRNKILSPSLLSFRRGIAYKLFVGGLSFYTTENALSEAFSNYGQVIEAKIVT 62
Query: 92 DIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSRRYNTDASLARQPA 151
D +RSKG+G+VT ++++EA+ A+ DM GK L+GRVIFVD +P+ + +AR P
Sbjct: 63 DRVSDRSKGFGFVTFASQDEAENAIEDMKGKTLNGRVIFVDYAKPNINTRGEIPIARGPP 122
Query: 152 Q 152
+
Sbjct: 123 E 123
>gi|449500867|ref|XP_004161215.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 134
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 65/94 (69%), Gaps = 3/94 (3%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ TT + L++AFSQ+GQV EAT++MD ++SKG+G+VT ++ +EA AL +MNGK
Sbjct: 41 GLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP 100
Query: 124 LDGRVIFVDNVRPSRRYNTDASLARQPAQSPEEN 157
L+GRVIFV+ +P+ +AR P PEE
Sbjct: 101 LNGRVIFVNYAKPTTSSRGAIPIARGP---PEEK 131
>gi|449462934|ref|XP_004149190.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 134
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 65/94 (69%), Gaps = 3/94 (3%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ TT + L++AFSQ+GQV EAT++MD ++SKG+G+VT ++ +EA AL +MNGK
Sbjct: 41 GLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP 100
Query: 124 LDGRVIFVDNVRPSRRYNTDASLARQPAQSPEEN 157
L+GRVIFV+ +P+ +AR P PEE
Sbjct: 101 LNGRVIFVNYAKPTTSSRGAIPIARGP---PEEK 131
>gi|388521117|gb|AFK48620.1| unknown [Lotus japonicus]
Length = 161
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 58/75 (77%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
++FSTT++ LA+AFSQ+G+V +A I+++ K RSKG+GYVT + EE+AQKA + MN K+L
Sbjct: 76 LAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIGMNRKIL 135
Query: 125 DGRVIFVDNVRPSRR 139
GRV++VD P +
Sbjct: 136 HGRVLYVDMEPPDKH 150
>gi|116781215|gb|ABK22008.1| unknown [Picea sitchensis]
Length = 140
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 36 NYFSLHCIVRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGK 95
NY S C P S + + +SF TT++ L +AFS+FG+V E ++MD
Sbjct: 13 NYLSSPC---PRSTVFFSRGVTTKLFVGGLSFYTTEKALTEAFSRFGEVVEVKVVMDRVS 69
Query: 96 NRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSRRYNTDASLARQP 150
RSKG+G+V ++E +A++A +MNGK+L GR+IFVD V+P + + D A P
Sbjct: 70 QRSKGFGFVQYASEADAERAKAEMNGKVLSGRIIFVDTVKPKSQLSGDLPSATVP 124
>gi|30683481|ref|NP_565646.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|106879155|gb|ABF82607.1| At2g27330 [Arabidopsis thaliana]
gi|330252880|gb|AEC07974.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 116
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 58/79 (73%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+SFS+T+E L AFSQ+GQV + +IMD + R KG+ YVT S++EEA+KAL+++N +L+
Sbjct: 28 ISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLV 87
Query: 125 DGRVIFVDNVRPSRRYNTD 143
DGRV+ +D + ++ D
Sbjct: 88 DGRVVILDTTKAAKHNPPD 106
>gi|38344030|emb|CAE01512.2| OJ991214_12.1 [Oryza sativa Japonica Group]
gi|38346331|emb|CAE02067.2| OJ000126_13.13 [Oryza sativa Japonica Group]
gi|116309334|emb|CAH66418.1| H0622F05.1 [Oryza sativa Indica Group]
gi|116309399|emb|CAH66476.1| OSIGBa0137L20.5 [Oryza sativa Indica Group]
Length = 137
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
T++ LA+AFSQ+GQV EATI+ D NR KG+G+V ++EE A KA +MNGK+L+GRVI
Sbjct: 49 TEDSLAEAFSQYGQVLEATIVTDKMTNRPKGFGFVKFASEEAANKAKEEMNGKVLNGRVI 108
Query: 130 FVDNVRPSRRYNTDAS-LARQPAQSPE 155
+VD + TD+S A P + P+
Sbjct: 109 YVDIAKAKMNRTTDSSPRATGPPKPPD 135
>gi|224104887|ref|XP_002313606.1| predicted protein [Populus trichocarpa]
gi|222850014|gb|EEE87561.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 53/68 (77%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SFS+T++ +A+AFS+FG+V EA I+MD + R KGYG+VT + ++ A+KA MNGKL
Sbjct: 40 GLSFSSTEKKIAEAFSEFGEVIEAKIVMDKARKRPKGYGFVTFAKKDAAEKACEGMNGKL 99
Query: 124 LDGRVIFV 131
LDGR I+V
Sbjct: 100 LDGRAIYV 107
>gi|15239958|ref|NP_196239.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
gi|9759319|dbj|BAB09686.1| unnamed protein product [Arabidopsis thaliana]
gi|17065276|gb|AAL32792.1| Unknown protein [Arabidopsis thaliana]
gi|20260002|gb|AAM13348.1| unknown protein [Arabidopsis thaliana]
gi|21593170|gb|AAM65119.1| unknown [Arabidopsis thaliana]
gi|332003601|gb|AED90984.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
Length = 146
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 61/89 (68%), Gaps = 2/89 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF TT++ L++AFS+ GQV EA I+MD +RSKG+G+VT ++ +EAQKAL++ NG+
Sbjct: 40 GLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQ 99
Query: 124 LDGRVIFVDNVRPSRRYNTDAS--LARQP 150
L+GR IFVD + + +AR P
Sbjct: 100 LNGRTIFVDYAKAKQSLGGGGGYPIARGP 128
>gi|351725889|ref|NP_001237108.1| uncharacterized protein LOC100305561 [Glycine max]
gi|255625921|gb|ACU13305.1| unknown [Glycine max]
Length = 180
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 52/72 (72%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+SF TT+E L +AF FGQ+ E ++MD NR +G+ ++ +TEEE+QKA+ M+GK L
Sbjct: 95 LSFRTTEESLRNAFKNFGQLVEVKLVMDRIANRPRGFAFLRYATEEESQKAIEGMHGKFL 154
Query: 125 DGRVIFVDNVRP 136
DGRVIFV+ +P
Sbjct: 155 DGRVIFVEVAKP 166
>gi|297806641|ref|XP_002871204.1| hypothetical protein ARALYDRAFT_487428 [Arabidopsis lyrata subsp.
lyrata]
gi|297317041|gb|EFH47463.1| hypothetical protein ARALYDRAFT_487428 [Arabidopsis lyrata subsp.
lyrata]
Length = 144
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF TT++ L++AFS+ GQV EA I+MD +RSKG+G+VT ++ +EAQKAL++ NG+
Sbjct: 40 GLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASVDEAQKALMEFNGQQ 99
Query: 124 LDGRVIFVDNVRPSRRYNTDA-SLARQP 150
+GRVIFVD + + + +AR P
Sbjct: 100 FNGRVIFVDYAKAKQSFGGGRYPIARGP 127
>gi|225464267|ref|XP_002271224.1| PREDICTED: cold-inducible RNA-binding protein [Vitis vinifera]
gi|296088019|emb|CBI35302.3| unnamed protein product [Vitis vinifera]
Length = 170
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 52/72 (72%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+SF TT+E L +AF FGQ+ E ++MD NR +G+ ++ STEEE++KA+ M+GK L
Sbjct: 86 LSFRTTEESLRNAFETFGQLVEVNLVMDKIANRPRGFAFLRYSTEEESEKAIEGMHGKFL 145
Query: 125 DGRVIFVDNVRP 136
DGRVIFV+ +P
Sbjct: 146 DGRVIFVEVAKP 157
>gi|357167535|ref|XP_003581210.1| PREDICTED: 40S ribosomal protein S19, mitochondrial-like
[Brachypodium distachyon]
Length = 137
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 56/75 (74%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
T++ LA+AF+++GQV EATI+ D NRSKG+G+V ++EEEA KA +MNGK+L+GRV
Sbjct: 47 ATEDTLAEAFARYGQVLEATIVTDKMTNRSKGFGFVKFASEEEANKARDEMNGKVLNGRV 106
Query: 129 IFVDNVRPSRRYNTD 143
I+VD + + TD
Sbjct: 107 IYVDIAKAKQDRATD 121
>gi|297826049|ref|XP_002880907.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297326746|gb|EFH57166.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 116
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 55/80 (68%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SFS+T+E L AFSQ+GQV +IMD + R KG YVT S++EEA KAL+++NG+L
Sbjct: 27 GISFSSTEETLTQAFSQYGQVLRVDVIMDKIRCRPKGIAYVTFSSKEEAGKALLELNGRL 86
Query: 124 LDGRVIFVDNVRPSRRYNTD 143
+DGRV+ +D + + D
Sbjct: 87 VDGRVVILDITKAGKHNPPD 106
>gi|388505224|gb|AFK40678.1| unknown [Lotus japonicus]
Length = 187
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 51/72 (70%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+SF TT+E L + F FGQ+ + ++MD NR +G+ ++ +TEEE+QKA+ M+GK L
Sbjct: 101 LSFRTTEESLRNCFKNFGQLVDVNLVMDKLANRPRGFAFLRYATEEESQKAIEGMHGKFL 160
Query: 125 DGRVIFVDNVRP 136
DGRVIFV+ +P
Sbjct: 161 DGRVIFVEVAKP 172
>gi|357510439|ref|XP_003625508.1| RNA binding protein [Medicago truncatula]
gi|355500523|gb|AES81726.1| RNA binding protein [Medicago truncatula]
Length = 141
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 47/68 (69%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L +AFS FGQ+ EA +I D G RSKG+ +V+ ST EEA+KA MN K LDG V
Sbjct: 46 TTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREGMNAKFLDGWV 105
Query: 129 IFVDNVRP 136
IFVD +P
Sbjct: 106 IFVDPAKP 113
>gi|224120444|ref|XP_002318331.1| predicted protein [Populus trichocarpa]
gi|222859004|gb|EEE96551.1| predicted protein [Populus trichocarpa]
Length = 181
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 50/72 (69%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+SF TT+E L +AF FGQ+ + ++MD R +G+ ++ TEEEAQKA+ M+GK L
Sbjct: 97 LSFRTTEESLRNAFQNFGQLVDVNLVMDKVAKRPRGFAFLRYETEEEAQKAIEGMHGKFL 156
Query: 125 DGRVIFVDNVRP 136
DGRVIFV+ +P
Sbjct: 157 DGRVIFVEVAKP 168
>gi|361067299|gb|AEW07961.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126579|gb|AFG43909.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126581|gb|AFG43910.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126583|gb|AFG43911.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126585|gb|AFG43912.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126587|gb|AFG43913.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126589|gb|AFG43914.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126591|gb|AFG43915.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
Length = 84
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 54/73 (73%)
Query: 71 KEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIF 130
++ L +AFS+FG+V E I+MD RSKG+G+V ++E +A++A +MNGK+L GR+IF
Sbjct: 1 EKALTEAFSRFGEVVEVKIVMDRVSQRSKGFGFVQYASEADAERAKAEMNGKVLSGRIIF 60
Query: 131 VDNVRPSRRYNTD 143
VD+V+P + + D
Sbjct: 61 VDDVKPKSQLSGD 73
>gi|242036137|ref|XP_002465463.1| hypothetical protein SORBIDRAFT_01g039290 [Sorghum bicolor]
gi|241919317|gb|EER92461.1| hypothetical protein SORBIDRAFT_01g039290 [Sorghum bicolor]
Length = 169
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 11/89 (12%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L AF+ FG++ EA ++ D RSKG+G+V +T EEA+KA +MN K LDG V
Sbjct: 74 TTDEKLQGAFAPFGRILEAKVVTDRVSGRSKGFGFVRYATIEEAEKARQEMNAKFLDGWV 133
Query: 129 IFVDNVRPSRRYNTDASLARQPAQSPEEN 157
IFVD +P RQP +PE++
Sbjct: 134 IFVDPAKP-----------RQPKPAPEQD 151
>gi|116779573|gb|ABK21345.1| unknown [Picea sitchensis]
gi|224285462|gb|ACN40453.1| unknown [Picea sitchensis]
Length = 198
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 62/95 (65%), Gaps = 5/95 (5%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S TT+ L +AFS +G+V + IIM+ RSKG+G+V STEEEA AL +MNGK+
Sbjct: 94 GLSIYTTERTLQNAFSNYGKVVDVRIIMNKTTRRSKGFGFVEFSTEEEANTALKEMNGKI 153
Query: 124 LDGRVIFVDNVRPSRRYNTDASLARQ-PAQSPEEN 157
L+G +I VD +P+ R + AR+ P ++P+ N
Sbjct: 154 LNGWLISVDIAKPTPR----SGRAREMPQKTPDMN 184
>gi|351724829|ref|NP_001237071.1| uncharacterized protein LOC100306326 [Glycine max]
gi|255628209|gb|ACU14449.1| unknown [Glycine max]
Length = 139
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 46/68 (67%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
T E L +AFS FGQ+ EA +I+D RSKG+ +VT +T EEA+KA MN K LDG V
Sbjct: 44 TIDEKLKEAFSSFGQLVEAKVIIDRASGRSKGFAFVTYTTIEEAEKAREGMNAKFLDGWV 103
Query: 129 IFVDNVRP 136
IFVD +P
Sbjct: 104 IFVDPAKP 111
>gi|357454123|ref|XP_003597342.1| Cold-inducible RNA-binding protein [Medicago truncatula]
gi|355486390|gb|AES67593.1| Cold-inducible RNA-binding protein [Medicago truncatula]
Length = 142
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 55/81 (67%)
Query: 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKA 115
N+ + +SF TT++ L FS FG +TEAT+I D R KG+G+V+ +E EA+KA
Sbjct: 58 NIVSFHFPGLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKA 117
Query: 116 LVDMNGKLLDGRVIFVDNVRP 136
+NG+++DGR+IFV++ +P
Sbjct: 118 RKALNGRIVDGRLIFVEHAKP 138
>gi|388519245|gb|AFK47684.1| unknown [Lotus japonicus]
Length = 138
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 56/90 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S TT L +AF+ FGQ+ EA +I D RSKG+G+V+ ++ EEA+KA MN K
Sbjct: 37 GLSRQTTDRKLNEAFAPFGQLIEAKVITDRASGRSKGFGFVSYASIEEAEKAGKGMNAKF 96
Query: 124 LDGRVIFVDNVRPSRRYNTDASLARQPAQS 153
LDG VIFVD +P S ++QP+++
Sbjct: 97 LDGWVIFVDPAKPREPRPPMQSESQQPSET 126
>gi|15224298|ref|NP_181287.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|20197470|gb|AAM15089.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|21536972|gb|AAM61313.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|114050677|gb|ABI49488.1| At2g37510 [Arabidopsis thaliana]
gi|330254316|gb|AEC09410.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 142
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 46/64 (71%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L DAF+ FGQ+ +A +I D RSKG+G+VT +T E+A+KA +MN K LDG V
Sbjct: 45 TTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWV 104
Query: 129 IFVD 132
IFVD
Sbjct: 105 IFVD 108
>gi|361067297|gb|AEW07960.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
Length = 84
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 53/73 (72%)
Query: 71 KEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIF 130
++ L +AFS+FG+V E I+MD RSKG+G+V ++E +A++A +MNGK+L GR+IF
Sbjct: 1 EKALTEAFSRFGEVVEVKIVMDRVSQRSKGFGFVQYASEADAERAKAEMNGKVLSGRIIF 60
Query: 131 VDNVRPSRRYNTD 143
VD+V+ + + D
Sbjct: 61 VDDVKAKSQLSGD 73
>gi|125543335|gb|EAY89474.1| hypothetical protein OsI_11005 [Oryza sativa Indica Group]
Length = 173
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 53/82 (64%), Gaps = 5/82 (6%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L +AF+ FGQ+ EA +I D RSKG+G+V +T EEA+ A +MN K LDG V
Sbjct: 78 TTDEKLKNAFAPFGQLLEAKVITDRISGRSKGFGFVRYATLEEAENARQEMNAKFLDGWV 137
Query: 129 IFVDNV-----RPSRRYNTDAS 145
IFVD +P+ R +TD+S
Sbjct: 138 IFVDPAKPRQQKPAPRPDTDSS 159
>gi|297827259|ref|XP_002881512.1| hypothetical protein ARALYDRAFT_902894 [Arabidopsis lyrata subsp.
lyrata]
gi|297327351|gb|EFH57771.1| hypothetical protein ARALYDRAFT_902894 [Arabidopsis lyrata subsp.
lyrata]
Length = 142
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 46/64 (71%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L DAF+ FGQ+ +A +I D RSKG+G+VT +T E+A+KA +MN K LDG V
Sbjct: 45 TTNEKLQDAFASFGQLVDARVITDRETGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWV 104
Query: 129 IFVD 132
IFVD
Sbjct: 105 IFVD 108
>gi|115452257|ref|NP_001049729.1| Os03g0278800 [Oryza sativa Japonica Group]
gi|108707493|gb|ABF95288.1| RNA-binding protein, putative, expressed [Oryza sativa Japonica
Group]
gi|113548200|dbj|BAF11643.1| Os03g0278800 [Oryza sativa Japonica Group]
gi|125543333|gb|EAY89472.1| hypothetical protein OsI_11004 [Oryza sativa Indica Group]
gi|125585797|gb|EAZ26461.1| hypothetical protein OsJ_10350 [Oryza sativa Japonica Group]
Length = 173
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 53/82 (64%), Gaps = 5/82 (6%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L +AF+ FGQ+ EA +I D RSKG+G+V +T EEA+ A +MN K LDG V
Sbjct: 78 TTDEKLKNAFAPFGQLLEAKVITDRISGRSKGFGFVRYATLEEAENARQEMNAKFLDGWV 137
Query: 129 IFVDNV-----RPSRRYNTDAS 145
IFVD +P+ R +TD+S
Sbjct: 138 IFVDPAKPRQQKPAPRPDTDSS 159
>gi|226499338|ref|NP_001149519.1| glycine-rich RNA-binding protein 8 [Zea mays]
gi|195627730|gb|ACG35695.1| glycine-rich RNA-binding protein 8 [Zea mays]
Length = 198
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 5/101 (4%)
Query: 54 LVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEE 111
+ +V +RC ++S+STT E L DAFS+FG +TEA +++D RS+G+G+VT ++
Sbjct: 1 MADVDEYRCFIGNLSWSTTDESLKDAFSKFGNLTEAKVVLDKFSGRSRGFGFVTFDEKQA 60
Query: 112 AQKALVDMNGKLLDGRVIFVDNVR---PSRRYNTDASLARQ 149
+ A+ MNG LDGR I VD + P R N D R+
Sbjct: 61 MEDAIEGMNGLDLDGRNITVDKAQPQGPGRDRNGDRDYDRE 101
>gi|225439737|ref|XP_002274178.1| PREDICTED: glycine-rich RNA-binding protein 2 [Vitis vinifera]
gi|297741476|emb|CBI32608.3| unnamed protein product [Vitis vinifera]
Length = 140
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 46/67 (68%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L +AFS FGQ+ EA +I D RSKG+G+VT +T EEA+KA MN K LDG V
Sbjct: 45 TTDEKLKEAFSPFGQLLEAKVITDRVSGRSKGFGFVTYTTLEEAEKAREGMNAKFLDGWV 104
Query: 129 IFVDNVR 135
IFVD +
Sbjct: 105 IFVDPAK 111
>gi|238014210|gb|ACR38140.1| unknown [Zea mays]
gi|414873814|tpg|DAA52371.1| TPA: glycine-rich RNA-binding protein 8 isoform 1 [Zea mays]
gi|414873815|tpg|DAA52372.1| TPA: glycine-rich RNA-binding protein 8 isoform 2 [Zea mays]
gi|414873816|tpg|DAA52373.1| TPA: glycine-rich RNA-binding protein 8 isoform 3 [Zea mays]
Length = 205
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 5/101 (4%)
Query: 54 LVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEE 111
+ +V +RC ++S+STT E L DAFS+FG +TEA +++D RS+G+G+VT ++
Sbjct: 1 MADVDEYRCFIGNLSWSTTDESLKDAFSKFGNLTEAKVVLDKFSGRSRGFGFVTFDEKQA 60
Query: 112 AQKALVDMNGKLLDGRVIFVDNVR---PSRRYNTDASLARQ 149
+ A+ MNG LDGR I VD + P R N D R+
Sbjct: 61 MEDAIEGMNGLDLDGRNITVDKAQPQGPGRDRNGDRDYDRE 101
>gi|218195435|gb|EEC77862.1| hypothetical protein OsI_17125 [Oryza sativa Indica Group]
Length = 152
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 51/71 (71%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+SF TT+E L +AF +FGQ+TE ++M+ R +G+ +++ ++EEE++ A+ M GK L
Sbjct: 77 LSFRTTEESLRNAFERFGQLTEVNLVMERVAKRPRGFAFLSYASEEESKNAMEGMQGKFL 136
Query: 125 DGRVIFVDNVR 135
DGRVIFV+ R
Sbjct: 137 DGRVIFVEVAR 147
>gi|222629430|gb|EEE61562.1| hypothetical protein OsJ_15917 [Oryza sativa Japonica Group]
Length = 149
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 51/71 (71%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+SF TT+E L +AF +FGQ+TE ++M+ R +G+ +++ ++EEE++ A+ M GK L
Sbjct: 74 LSFRTTEESLRNAFERFGQLTEVNLVMERVAKRPRGFAFLSYASEEESKNAMEGMQGKFL 133
Query: 125 DGRVIFVDNVR 135
DGRVIFV+ R
Sbjct: 134 DGRVIFVEVAR 144
>gi|326491331|dbj|BAK05765.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 16/131 (12%)
Query: 24 LLSFSSKPYQVVNYFSLHCIVRPSSDLIMQLVNVSFWRCI--SVSFSTTKEMLADAFSQF 81
+L+FS P V F ++ + + +RC ++S+STT E L DAFS++
Sbjct: 18 VLTFSHLPMFCVCLF-----------ILPVMADEDEYRCFVGNLSWSTTDESLKDAFSKY 66
Query: 82 GQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP---SR 138
G+VTEA ++MD RS+G+ +VT ++ ++A+ DMNG L+GR I VD +P R
Sbjct: 67 GKVTEAKVVMDKFSGRSRGFAFVTFDEKKAMEEAIEDMNGLDLEGRAITVDKAQPQGVGR 126
Query: 139 RYNTDASLARQ 149
N D R
Sbjct: 127 DRNGDRDFDRD 137
>gi|357454121|ref|XP_003597341.1| Cold-inducible RNA-binding protein [Medicago truncatula]
gi|355486389|gb|AES67592.1| Cold-inducible RNA-binding protein [Medicago truncatula]
gi|388509994|gb|AFK43063.1| unknown [Medicago truncatula]
Length = 89
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 52/72 (72%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+SF TT++ L FS FG +TEAT+I D R KG+G+V+ +E EA+KA +NG+++
Sbjct: 14 LSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKALNGRIV 73
Query: 125 DGRVIFVDNVRP 136
DGR+IFV++ +P
Sbjct: 74 DGRLIFVEHAKP 85
>gi|255581040|ref|XP_002531336.1| RNA binding protein, putative [Ricinus communis]
gi|223529058|gb|EEF31043.1| RNA binding protein, putative [Ricinus communis]
Length = 144
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 47/67 (70%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L +AFS FGQ+ +A +I+D RSKG+G++T +T EEA+KA MN K LDG V
Sbjct: 47 TTDEKLKEAFSPFGQLVDAKVIIDRASGRSKGFGFITYATIEEAEKAREGMNAKFLDGWV 106
Query: 129 IFVDNVR 135
IFVD +
Sbjct: 107 IFVDPAK 113
>gi|357122439|ref|XP_003562923.1| PREDICTED: uncharacterized protein LOC100844345 [Brachypodium
distachyon]
Length = 206
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 54 LVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEE 111
+ +V +RC ++S+STT E L DAF +FG VTEA +++D RS+G+ +VT +++
Sbjct: 1 MADVDEYRCFIGNLSWSTTDESLKDAFRKFGNVTEAKVVLDKFSGRSRGFAFVTFDEKKD 60
Query: 112 AQKALVDMNGKLLDGRVIFVDNVRP 136
+ A+ DMNG LDGR I VD +P
Sbjct: 61 MEAAIEDMNGLDLDGRAITVDKAQP 85
>gi|449525960|ref|XP_004169984.1| PREDICTED: uncharacterized LOC101208465 [Cucumis sativus]
Length = 394
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T+++ L AF FG++ E IIMD RSKGY +V +TEE A AL +MNGK+
Sbjct: 312 GLSFYTSEKTLRAAFEGFGKLVEVKIIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKI 371
Query: 124 LDGRVIFVDNVRPS-RRYNTDAS 145
++G +I VD +PS RRY + S
Sbjct: 372 INGWMIVVDIAKPSPRRYGGNRS 394
>gi|449446458|ref|XP_004140988.1| PREDICTED: uncharacterized protein LOC101208465 [Cucumis sativus]
Length = 394
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T+++ L AF FG++ E IIMD RSKGY +V +TEE A AL +MNGK+
Sbjct: 312 GLSFYTSEKTLRAAFEGFGKLVEVKIIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKI 371
Query: 124 LDGRVIFVDNVRPS-RRYNTDAS 145
++G +I VD +PS RRY + S
Sbjct: 372 INGWMIVVDIAKPSPRRYGGNRS 394
>gi|406950086|gb|EKD80418.1| cp31AHv protein [uncultured bacterium]
Length = 122
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 51/73 (69%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S++++TT + L FSQ G V+ A +I D RSKG+G+V S++EEAQKA+ ++NGK
Sbjct: 9 SLAWATTDDSLQAFFSQAGTVSSARVITDRATGRSKGFGFVEMSSDEEAQKAVAELNGKE 68
Query: 124 LDGRVIFVDNVRP 136
LDGR I V+ RP
Sbjct: 69 LDGRAIVVNEARP 81
>gi|226529880|ref|NP_001150360.1| RNA binding protein [Zea mays]
gi|195638638|gb|ACG38787.1| RNA binding protein [Zea mays]
gi|414866145|tpg|DAA44702.1| TPA: RNA binding protein [Zea mays]
Length = 166
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 11/89 (12%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L AF+ FG++ EA ++ D RSKG+G+V +T EEA++A +MN K LDG V
Sbjct: 71 TTDEKLQGAFAPFGRLLEAKVVTDRVSGRSKGFGFVRYATIEEAERARQEMNAKFLDGWV 130
Query: 129 IFVDNVRPSRRYNTDASLARQPAQSPEEN 157
IFVD +P RQP +P+++
Sbjct: 131 IFVDPAKP-----------RQPKPAPQQD 148
>gi|297842099|ref|XP_002888931.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297334772|gb|EFH65190.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 181
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 48/72 (66%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF TT++ L D F QFG++ ++MD NR +G+ ++ TEEEA KA+ M+GK
Sbjct: 83 GLSFRTTEDTLRDTFEQFGKLIHMNLVMDKVANRPRGFAFLRYETEEEAMKAIQGMHGKF 142
Query: 124 LDGRVIFVDNVR 135
LDGRVIFV+ +
Sbjct: 143 LDGRVIFVEEAK 154
>gi|15219486|ref|NP_177494.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|11120799|gb|AAG30979.1|AC012396_15 RNA-binding glycine-rich protein, putative [Arabidopsis thaliana]
gi|62867629|gb|AAY17418.1| At1g73530 [Arabidopsis thaliana]
gi|114050615|gb|ABI49457.1| At1g73530 [Arabidopsis thaliana]
gi|332197351|gb|AEE35472.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 181
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 47/72 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF TT++ L D F QFG + ++MD NR KG+ ++ TEEEA KA+ M+GK
Sbjct: 83 GLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKF 142
Query: 124 LDGRVIFVDNVR 135
LDGRVIFV+ +
Sbjct: 143 LDGRVIFVEEAK 154
>gi|326505708|dbj|BAJ95525.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 226
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 61/101 (60%), Gaps = 5/101 (4%)
Query: 54 LVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEE 111
+ + +RC ++S+STT E L DAFS++G+VTEA ++MD RS+G+ +VT ++
Sbjct: 1 MADEDEYRCFVGNLSWSTTDESLKDAFSKYGKVTEAKVVMDKFSGRSRGFAFVTFDEKKA 60
Query: 112 AQKALVDMNGKLLDGRVIFVDNVRP---SRRYNTDASLARQ 149
++A+ DMNG L+GR I VD +P R N D R
Sbjct: 61 MEEAIEDMNGLDLEGRAITVDKAQPQGVGRDRNGDRDFDRD 101
>gi|356505124|ref|XP_003521342.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Glycine max]
Length = 139
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 45/68 (66%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
T E L +AFS FGQ+ EA +I D RSKG+ +VT +T EEA++A MN K LDG V
Sbjct: 44 TKDENLKEAFSSFGQLVEAKVITDRASGRSKGFAFVTYTTIEEAERAREGMNAKFLDGWV 103
Query: 129 IFVDNVRP 136
IFVD +P
Sbjct: 104 IFVDPAKP 111
>gi|440577321|emb|CCI55328.1| PH01B001I13.24 [Phyllostachys edulis]
Length = 196
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF TT+E L AF +FGQ+TE ++MD R +G+ +++ + EEE++ A+ M+GK
Sbjct: 122 GLSFRTTEESLRSAFERFGQLTEVNLVMDRVAKRPRGFAFLSYANEEESKNAMEGMHGKF 181
Query: 124 LDGRVIFVD 132
LDGRVIFV+
Sbjct: 182 LDGRVIFVE 190
>gi|242073000|ref|XP_002446436.1| hypothetical protein SORBIDRAFT_06g016070 [Sorghum bicolor]
gi|241937619|gb|EES10764.1| hypothetical protein SORBIDRAFT_06g016070 [Sorghum bicolor]
Length = 135
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
T+E LA+AFS++GQV EAT++ D + KG+G+V ++ EEA A +MNGK L+GRV
Sbjct: 46 ATEESLAEAFSRYGQVIEATVVRDKVTDIPKGFGFVKFASPEEANNAREEMNGKALNGRV 105
Query: 129 IFVDNVRPSRRYNTDA-SLARQPAQ 152
I+VD + TDA +AR P +
Sbjct: 106 IYVDIAKAKPDRATDALPIARGPPK 130
>gi|115456445|ref|NP_001051823.1| Os03g0836200 [Oryza sativa Japonica Group]
gi|40714682|gb|AAR88588.1| putative RNA binding protein [Oryza sativa Japonica Group]
gi|108711961|gb|ABF99756.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711962|gb|ABF99757.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711963|gb|ABF99758.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711964|gb|ABF99759.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113550294|dbj|BAF13737.1| Os03g0836200 [Oryza sativa Japonica Group]
gi|125546344|gb|EAY92483.1| hypothetical protein OsI_14220 [Oryza sativa Indica Group]
gi|125588547|gb|EAZ29211.1| hypothetical protein OsJ_13272 [Oryza sativa Japonica Group]
gi|215695067|dbj|BAG90258.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215715212|dbj|BAG94963.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764998|dbj|BAG86695.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 205
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 54 LVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEE 111
+ +V +RC ++S+STT E L DAF +FG +TEA ++ D RS+G+G+VT ++
Sbjct: 1 MADVEEYRCFIGNLSWSTTDESLKDAFGKFGNLTEAKVVFDKYSGRSRGFGFVTFDEKKA 60
Query: 112 AQKALVDMNGKLLDGRVIFVDNVR---PSRRYNTDASLARQ 149
+ A+ MNG LDGR I VD + P R N D R
Sbjct: 61 MEDAIEGMNGLDLDGRAITVDKAQPQGPGRDRNGDRDYDRD 101
>gi|226498016|ref|NP_001151732.1| RNA binding protein [Zea mays]
gi|195649405|gb|ACG44170.1| RNA binding protein [Zea mays]
Length = 147
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF TT+ L DAF +FG +TE ++MD R +G+ +++ + EEEA+ A+ M+GK
Sbjct: 71 GLSFRTTERSLRDAFEKFGDLTEVCLVMDRVAKRPRGFAFLSYTGEEEARGAMEGMHGKF 130
Query: 124 LDGRVIFVD 132
LDGRVIFV+
Sbjct: 131 LDGRVIFVE 139
>gi|449448655|ref|XP_004142081.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 146
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L +AFS FGQ+ +A ++ D RSKG+ +VT ST +EA+KA +MN K LDG V
Sbjct: 51 TTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWV 110
Query: 129 IFVD 132
IFVD
Sbjct: 111 IFVD 114
>gi|326490373|dbj|BAJ84850.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 299
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T + L DAFS +GQVTEA +IMD RS+G+G+VT ++ EEA A+ M+GK
Sbjct: 37 GISYGTDDQSLGDAFSNYGQVTEAKVIMDRESGRSRGFGFVTFTSSEEAGAAITGMDGKD 96
Query: 124 LDGRVIFV 131
L GR++ V
Sbjct: 97 LQGRIVRV 104
>gi|449516497|ref|XP_004165283.1| PREDICTED: glycine-rich RNA-binding protein 2-like, partial
[Cucumis sativus]
Length = 100
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L +AFS FGQ+ +A ++ D RSKG+ +VT ST +EA+KA +MN K LDG V
Sbjct: 5 TTDEKLREAFSSFGQLADAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWV 64
Query: 129 IFVD 132
IFVD
Sbjct: 65 IFVD 68
>gi|147867424|emb|CAN83272.1| hypothetical protein VITISV_001132 [Vitis vinifera]
Length = 408
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T+++ L AF FG++ E IIMD RSKGY ++ STEE A AL +MNGK+
Sbjct: 322 GLSFYTSEKTLRGAFEGFGELVEVKIIMDKISKRSKGYAFIEYSTEEAASAALKEMNGKI 381
Query: 124 LDGRVIFVDNVRPS 137
++G +I VD +P+
Sbjct: 382 INGWMIVVDVAKPT 395
>gi|356576299|ref|XP_003556270.1| PREDICTED: uncharacterized protein LOC100791652 [Glycine max]
Length = 386
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T+++ L AF FG++ E +IMD RSKGY +V +TEE A AL +MNGK+
Sbjct: 303 GLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKI 362
Query: 124 LDGRVIFVDNVRPS-RRYN 141
++G +I VD +P+ RY+
Sbjct: 363 INGWMIVVDVAKPNPPRYH 381
>gi|242080503|ref|XP_002445020.1| hypothetical protein SORBIDRAFT_07g002960 [Sorghum bicolor]
gi|241941370|gb|EES14515.1| hypothetical protein SORBIDRAFT_07g002960 [Sorghum bicolor]
Length = 140
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L DAF++FG+V A ++ D SKG+G+V +T EEA K + M+GK LDG V
Sbjct: 46 TTTEGLRDAFAKFGEVVHARVVTDRVSGFSKGFGFVRYATTEEATKGIEGMDGKFLDGWV 105
Query: 129 IFVDNVRPSRRYNTDASLARQPAQS 153
IF + RP R A + P QS
Sbjct: 106 IFAEYARP-RAPPEQAEMNSPPQQS 129
>gi|375108277|ref|ZP_09754538.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
gi|374669008|gb|EHR73793.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
Length = 167
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 47/73 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++++S E L AFSQFG VT A ++MD RSKG+G+V T EAQ A+ MNG+
Sbjct: 9 NLAYSVRDESLQAAFSQFGTVTSAKVMMDRETGRSKGFGFVEMGTGAEAQAAINGMNGQP 68
Query: 124 LDGRVIFVDNVRP 136
L+GR + V+ RP
Sbjct: 69 LEGRAVVVNEARP 81
>gi|225464121|ref|XP_002264164.1| PREDICTED: uncharacterized protein LOC100265361 [Vitis vinifera]
Length = 409
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 49/73 (67%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+SF T+++ L AF FG++ E IIMD RSKGY ++ +TEE A AL +MNGK++
Sbjct: 324 LSFYTSEKTLRGAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII 383
Query: 125 DGRVIFVDNVRPS 137
+G +I VD +P+
Sbjct: 384 NGWMIVVDVAKPT 396
>gi|226510389|ref|NP_001150093.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195636652|gb|ACG37794.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 135
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
T+ LA+AFS++GQV EAT++ D + KG+G+V ++ EEA A +MNGK L+GRV
Sbjct: 46 ATEASLAEAFSRYGQVIEATVVRDKVTDVPKGFGFVKFASPEEANNAREEMNGKALNGRV 105
Query: 129 IFVDNVRPSRRYNTDA-SLARQPAQ 152
I+VD + + DA +AR P +
Sbjct: 106 IYVDIAKARQDRAADALPIARGPPK 130
>gi|194699346|gb|ACF83757.1| unknown [Zea mays]
gi|414587318|tpg|DAA37889.1| TPA: glycine-rich RNA-binding protein 2 [Zea mays]
Length = 135
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
T+ LA+AFS++GQV EAT++ D + KG+G+V ++ EEA A +MNGK L+GRV
Sbjct: 46 ATEASLAEAFSRYGQVIEATVVRDKVTDVPKGFGFVKFASPEEANNAREEMNGKALNGRV 105
Query: 129 IFVDNVRPSRRYNTDA-SLARQPAQ 152
I+VD + + DA +AR P +
Sbjct: 106 IYVDIAKARQDRAADALPIARGPPK 130
>gi|296087958|emb|CBI35241.3| unnamed protein product [Vitis vinifera]
Length = 315
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T+++ L AF FG++ E IIMD RSKGY ++ +TEE A AL +MNGK+
Sbjct: 229 GLSFYTSEKTLRGAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKI 288
Query: 124 LDGRVIFVDNVRPS 137
++G +I VD +P+
Sbjct: 289 INGWMIVVDVAKPT 302
>gi|15239676|ref|NP_200269.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|9758950|dbj|BAB09337.1| unnamed protein product [Arabidopsis thaliana]
gi|18175762|gb|AAL59923.1| unknown protein [Arabidopsis thaliana]
gi|20465513|gb|AAM20239.1| unknown protein [Arabidopsis thaliana]
gi|21553374|gb|AAM62467.1| unknown [Arabidopsis thaliana]
gi|332009129|gb|AED96512.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 156
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L AF+QFG+V +A ++ D SKG+G+V +T E++ K + M+GK LDG V
Sbjct: 67 TTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWV 126
Query: 129 IFVDNVRP---SRRYNTDASLARQP 150
IF + RP S+ Y +++R P
Sbjct: 127 IFAEYARPREQSQSYQPQNNMSRPP 151
>gi|297792921|ref|XP_002864345.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297310180|gb|EFH40604.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 156
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S TT E L AF+QFG+V +A ++ D SKG+G+V +T E++ K + M+GK
Sbjct: 62 GLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKF 121
Query: 124 LDGRVIFVDNVRP---SRRYNTDASLARQP 150
LDG VIF + RP S+ Y +++R P
Sbjct: 122 LDGWVIFAEYARPREQSQPYQPQNNMSRPP 151
>gi|118487563|gb|ABK95608.1| unknown [Populus trichocarpa]
Length = 133
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 11/99 (11%)
Query: 61 RCISVS--------FSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEA 112
RC+S S +ST + L DAFS FG+VTEA +IMD RS+G+G+V + E A
Sbjct: 31 RCMSSSKLFIGGLPWSTDDQTLKDAFSGFGEVTEARVIMDRETGRSRGFGFVHYDSVENA 90
Query: 113 QKALVDMNGKLLDGRVI---FVDNVRPSRRYNTDASLAR 148
+AL M+G+ L GR + F + RP + YN + +R
Sbjct: 91 SEALSAMDGQNLGGRTVRVSFAEERRPPQSYNDNHQGSR 129
>gi|9757907|dbj|BAB08354.1| unnamed protein product [Arabidopsis thaliana]
Length = 112
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 50 LIMQLVNVSFWRC--ISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSS 107
L+ + F C +S TT + L F+ FGQ+TE+ +I D R KG+G++T
Sbjct: 11 LLFSVFEFLFSNCSLAGLSAYTTDQSLRQLFAPFGQITESRLIKDQQTQRPKGFGFITFE 70
Query: 108 TEEEAQKALVDMNGKLLDGRVIFVDNVR 135
+E++AQKAL +NGK+++GR+IFV+ +
Sbjct: 71 SEDDAQKALKALNGKIVNGRLIFVETAK 98
>gi|226491121|ref|NP_001143351.1| uncharacterized protein LOC100275970 [Zea mays]
gi|195618716|gb|ACG31188.1| hypothetical protein [Zea mays]
Length = 295
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 13/104 (12%)
Query: 39 SLHCIVRPSSDLIMQLVNVSFWRCIS--------VSFSTTKEMLADAFSQFGQVTEATII 90
+L + P+ ++Q V RC+S +SF+T + L DAFS+FG V EA II
Sbjct: 10 ALRRTLAPTCSPLLQPV-----RCMSSSKLFVGGLSFATDETTLKDAFSEFGNVLEARII 64
Query: 91 MDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134
+D RS+G+G++T ++ EEA A+ M+GK L GR I V++
Sbjct: 65 IDRESGRSRGFGFITFTSTEEASAAMTSMDGKELQGRNIRVNHA 108
>gi|212276175|ref|NP_001130201.1| hypothetical protein [Zea mays]
gi|194688532|gb|ACF78350.1| unknown [Zea mays]
gi|414887483|tpg|DAA63497.1| TPA: hypothetical protein ZEAMMB73_917992 [Zea mays]
gi|414887484|tpg|DAA63498.1| TPA: hypothetical protein ZEAMMB73_917992 [Zea mays]
Length = 308
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 13/104 (12%)
Query: 39 SLHCIVRPSSDLIMQLVNVSFWRCIS--------VSFSTTKEMLADAFSQFGQVTEATII 90
+L + P+ ++Q V RC+S +SF+T + L DAFS+FG V EA II
Sbjct: 10 ALRRTLAPTCSPLLQPV-----RCMSSSKLFVGGLSFATDETTLKDAFSEFGNVLEARII 64
Query: 91 MDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134
+D RS+G+G++T ++ EEA A+ M+GK L GR I V++
Sbjct: 65 IDRESGRSRGFGFITFTSTEEASAAMTSMDGKELQGRNIRVNHA 108
>gi|297819134|ref|XP_002877450.1| hypothetical protein ARALYDRAFT_905782 [Arabidopsis lyrata subsp.
lyrata]
gi|297323288|gb|EFH53709.1| hypothetical protein ARALYDRAFT_905782 [Arabidopsis lyrata subsp.
lyrata]
Length = 102
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 50/75 (66%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT + L FS FGQ+ EA +I D R KG+G++T +E++A+KAL ++GK+++GR+
Sbjct: 18 TTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFESEDDARKALKSLDGKIVEGRL 77
Query: 129 IFVDNVRPSRRYNTD 143
IFV+ + S TD
Sbjct: 78 IFVEVAKSSEEVTTD 92
>gi|116792076|gb|ABK26221.1| unknown [Picea sitchensis]
Length = 151
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S TT E L +AFS+FG+V EA ++ D SKG+ +V +T+EEA K M+GK
Sbjct: 53 GLSKRTTDEGLREAFSKFGRVLEARVVTDKMNGVSKGFAFVRYATQEEADKGKEGMDGKF 112
Query: 124 LDGRVIFVDNVRP 136
LDG VIF D RP
Sbjct: 113 LDGWVIFADYARP 125
>gi|115474735|ref|NP_001060964.1| Os08g0139000 [Oryza sativa Japonica Group]
gi|38636774|dbj|BAD03017.1| putative RNA recognition motif (RRM)-containing protein [Oryza
sativa Japonica Group]
gi|113622933|dbj|BAF22878.1| Os08g0139000 [Oryza sativa Japonica Group]
gi|215767574|dbj|BAG99802.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222639884|gb|EEE68016.1| hypothetical protein OsJ_25986 [Oryza sativa Japonica Group]
Length = 141
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT + L +AF++FG+V A ++ D SKG+G+V +T E+A K + M+GK LDG V
Sbjct: 47 TTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGMDGKFLDGWV 106
Query: 129 IFVDNVRPSRRYNTDASLARQPAQSPEEN 157
IF + RP R P Q PE N
Sbjct: 107 IFAEYARP-----------RTPPQQPEMN 124
>gi|383760540|ref|YP_005439526.1| RNP-1 like RNA-binding protein, Glycine-rich [Rubrivivax
gelatinosus IL144]
gi|381381210|dbj|BAL98027.1| RNP-1 like RNA-binding protein, Glycine-rich [Rubrivivax
gelatinosus IL144]
Length = 161
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++++S + L AF+QFG VT A ++MD RSKG+G+V ++ EAQ A+ MNG+
Sbjct: 9 NLAYSVRDDSLQQAFAQFGTVTSAKVMMDRETGRSKGFGFVEMGSDAEAQAAINGMNGQP 68
Query: 124 LDGRVIFVDNVRP 136
L+GR I V+ RP
Sbjct: 69 LEGRAIVVNEARP 81
>gi|357112848|ref|XP_003558218.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Brachypodium distachyon]
Length = 168
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 43/68 (63%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L +AF FGQV EA +I D RSKG+G+V + +EA+ A MN K LDG V
Sbjct: 73 TTDEKLKNAFIPFGQVLEAKVITDRISGRSKGFGFVRYVSLQEAEAARQGMNAKFLDGWV 132
Query: 129 IFVDNVRP 136
IFVD +P
Sbjct: 133 IFVDPAKP 140
>gi|67483728|ref|XP_657084.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56474323|gb|EAL51698.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|449705266|gb|EMD45349.1| RNA recognition motif domain containing protein [Entamoeba
histolytica KU27]
Length = 136
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 49/73 (67%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+++S T E L AF +FG VT+ ++ D RSKG+G+VT +E+A+KA+ +MN +
Sbjct: 8 SLAYSVTDESLKAAFEKFGTVTDCKVVTDRDSQRSKGFGFVTFEKDEDAKKAIEEMNEQE 67
Query: 124 LDGRVIFVDNVRP 136
L+GR I VD RP
Sbjct: 68 LEGRRIKVDVSRP 80
>gi|224115158|ref|XP_002316957.1| predicted protein [Populus trichocarpa]
gi|222860022|gb|EEE97569.1| predicted protein [Populus trichocarpa]
Length = 153
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 11/94 (11%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S TT E L +AFS+FG+V +A ++ D SKG+G+V +T E+A + + M+G+
Sbjct: 61 GLSKRTTSEGLQEAFSKFGEVVQARVVTDRVSGYSKGFGFVKYATLEDAAEGIKGMDGQF 120
Query: 124 LDGRVIFVDNVRPSRRYNTDASLARQPAQSPEEN 157
LDG VIF + RP RQP P+ N
Sbjct: 121 LDGWVIFAEYARP-----------RQPPSEPQNN 143
>gi|218200448|gb|EEC82875.1| hypothetical protein OsI_27755 [Oryza sativa Indica Group]
Length = 141
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT + L +AF++FG+V A ++ D SKG+G++ +T E+A K + M+GK LDG V
Sbjct: 47 TTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFIRYATVEDAAKGIEGMDGKFLDGWV 106
Query: 129 IFVDNVRPSRRYNTDASLARQPAQSPEEN 157
IF + RP R P Q PE N
Sbjct: 107 IFAEYARP-----------RTPPQQPEMN 124
>gi|209155104|gb|ACI33784.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|223648252|gb|ACN10884.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 167
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 48/74 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L D FS++GQ++E +I D RS+G+G+VT +EA+ A++ MNGK
Sbjct: 11 GLSFDTNEQSLEDVFSKYGQISEVVVIKDRETQRSRGFGFVTFENPDEAKDAMLAMNGKS 70
Query: 124 LDGRVIFVDNVRPS 137
LDGR I VD S
Sbjct: 71 LDGRQIRVDQAGKS 84
>gi|293336981|ref|NP_001169115.1| uncharacterized protein LOC100382959 [Zea mays]
gi|223975005|gb|ACN31690.1| unknown [Zea mays]
gi|414887554|tpg|DAA63568.1| TPA: hypothetical protein ZEAMMB73_633512 [Zea mays]
Length = 103
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 7/82 (8%)
Query: 61 RCIS-------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQ 113
RC S +SF TT+E D FS FG V EA ++ D R KG+G+V S++ EA+
Sbjct: 17 RCFSTEIFVSRLSFYTTEEEFKDIFSPFGTVEEARLMRDHQTGRMKGFGFVKYSSQAEAE 76
Query: 114 KALVDMNGKLLDGRVIFVDNVR 135
KA+ M+GK+L GR+IFV+ +
Sbjct: 77 KAVKAMDGKILRGRLIFVEMAK 98
>gi|224060337|ref|XP_002300149.1| predicted protein [Populus trichocarpa]
gi|222847407|gb|EEE84954.1| predicted protein [Populus trichocarpa]
Length = 133
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 11/99 (11%)
Query: 61 RCISVS--------FSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEA 112
RC+S S +S + L DAFS FG+VTEA +IMD RS+G+G+V + E A
Sbjct: 31 RCMSSSKLFIGGLPWSADDQTLKDAFSGFGEVTEARVIMDRETGRSRGFGFVHYDSVENA 90
Query: 113 QKALVDMNGKLLDGRVI---FVDNVRPSRRYNTDASLAR 148
+AL M+G+ L GR + F + RP + YN + +R
Sbjct: 91 SEALSAMDGQNLGGRTVRVSFAEERRPPQSYNDNHQGSR 129
>gi|407033602|gb|EKE36900.1| RNA recognition motif (RRM, RBD, or RNP domain) containing protein
[Entamoeba nuttalli P19]
Length = 136
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 49/73 (67%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+++S T E L AF +FG VT+ ++ D RSKG+G+VT +E+A+KA+ +MN +
Sbjct: 8 SLAYSVTDESLKAAFEKFGTVTDCKVVTDRDSQRSKGFGFVTFEKDEDAKKAIEEMNEQE 67
Query: 124 LDGRVIFVDNVRP 136
L+GR I VD RP
Sbjct: 68 LEGRRIKVDVSRP 80
>gi|225706362|gb|ACO09027.1| Cold-inducible RNA-binding protein [Osmerus mordax]
Length = 172
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L D FS++GQ++E +I D RS+G+G+VT +EA+ A++ MNGK
Sbjct: 11 GLSFDTNEQSLEDVFSKYGQISEVVVIKDRETQRSRGFGFVTFDNPDEAKDAMLAMNGKS 70
Query: 124 LDGRVIFVD 132
LDGR I VD
Sbjct: 71 LDGRQIRVD 79
>gi|118474079|ref|YP_892397.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|424821065|ref|ZP_18246103.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
gi|118413305|gb|ABK81725.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|342327844|gb|EGU24328.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
Length = 82
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 49/73 (67%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ T+ L + FS FG+VT A I+ D NRSKG+G+V S++E+A+KA+ NGK
Sbjct: 8 NLSYRMTESELREVFSSFGEVTRAKIVKDKETNRSKGFGFVEMSSDEQAKKAIEGTNGKE 67
Query: 124 LDGRVIFVDNVRP 136
+ GR + V+ RP
Sbjct: 68 VGGRALRVNEARP 80
>gi|357152879|ref|XP_003576265.1| PREDICTED: glycine-rich RNA-binding protein blt801-like
[Brachypodium distachyon]
Length = 165
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFS FG++ +A II D RS+G+G+VT +TEE Q A+
Sbjct: 4 YRCFVGGLAWATDDHNLQSAFSNFGEILDAKIIQDRETGRSRGFGFVTFATEESMQAAIE 63
Query: 118 DMNGKLLDGRVIFVDNVRPSR 138
MNGK LDGR I V+ + R
Sbjct: 64 GMNGKELDGRSITVNQAQSRR 84
>gi|406997918|gb|EKE15908.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 93
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+ +STT+E L + FSQ G V A II D RSKG+G+V STEE AQKA+ +GK
Sbjct: 9 GLPYSTTEESLGEHFSQAGAVESANIITDRMSGRSKGFGFVEMSTEEGAQKAIEMFHGKE 68
Query: 124 LDGRVIFVDNVRP 136
GR + V+ RP
Sbjct: 69 FGGRTLTVNEARP 81
>gi|388511641|gb|AFK43882.1| unknown [Lotus japonicus]
Length = 211
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 54 LVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEE 111
+ +V +RC +++ST+ L DAF +FG++TEA +++D RS+G+G+VT ++
Sbjct: 1 MSDVDEYRCFIGGLAWSTSDRKLKDAFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDDKKA 60
Query: 112 AQKALVDMNGKLLDGRVIFVDNVRP 136
+A+ MNG LDGR I VD +P
Sbjct: 61 MDEAIDAMNGMDLDGRTITVDKAQP 85
>gi|375144786|ref|YP_005007227.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361058832|gb|AEV97823.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 102
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 49/73 (67%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ F + LA FSQ+GQV+ A +IMD RS+G+G+V S++EEA+KA+ ++ GK
Sbjct: 7 NLGFQVNDDDLAKLFSQYGQVSSAKVIMDRETGRSRGFGFVEMSSDEEARKAIKELEGKP 66
Query: 124 LDGRVIFVDNVRP 136
++GR + V RP
Sbjct: 67 VEGRSLSVSEARP 79
>gi|388492070|gb|AFK34101.1| unknown [Lotus japonicus]
Length = 211
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 54 LVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEE 111
+ +V +RC +++ST+ L DAF +FG++TEA +++D RS+G+G+VT ++
Sbjct: 1 MSDVDEYRCFIGGLAWSTSDRKLKDAFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDDKKA 60
Query: 112 AQKALVDMNGKLLDGRVIFVDNVRP 136
+A+ MNG LDGR I VD +P
Sbjct: 61 MDEAIDAMNGMDLDGRTITVDKTQP 85
>gi|255568010|ref|XP_002524982.1| RNA binding protein, putative [Ricinus communis]
gi|223535726|gb|EEF37389.1| RNA binding protein, putative [Ricinus communis]
Length = 371
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 48/74 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T+++ L AF FG++ E IIMD RSKGY ++ +TEE A AL +MNGK+
Sbjct: 285 GLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAANAALKEMNGKI 344
Query: 124 LDGRVIFVDNVRPS 137
++G +I VD + S
Sbjct: 345 INGWMIVVDVAKTS 358
>gi|449468518|ref|XP_004151968.1| PREDICTED: nucleolysin TIAR-like [Cucumis sativus]
gi|449496932|ref|XP_004160266.1| PREDICTED: nucleolysin TIAR-like [Cucumis sativus]
Length = 174
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 10/94 (10%)
Query: 43 IVRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYG 102
+ PS++L + +S TT E L +AF++FG+V A ++ D SKG+G
Sbjct: 74 VAEPSTNLFVS----------GLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFG 123
Query: 103 YVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136
+V +T E+A K + M+GK LDG VIF + RP
Sbjct: 124 FVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARP 157
>gi|242046266|ref|XP_002461004.1| hypothetical protein SORBIDRAFT_02g039025 [Sorghum bicolor]
gi|241924381|gb|EER97525.1| hypothetical protein SORBIDRAFT_02g039025 [Sorghum bicolor]
Length = 83
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 7/79 (8%)
Query: 61 RCIS-------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQ 113
RC S +SF TT+E D FS FG V EA ++ D R KG+G+V S++ EA+
Sbjct: 2 RCFSTEIFVSRLSFYTTEEEFKDVFSSFGTVEEARLMRDQQTGRIKGFGFVKYSSQAEAE 61
Query: 114 KALVDMNGKLLDGRVIFVD 132
KA+ M+G++L GR+IFV+
Sbjct: 62 KAVKAMDGRILRGRLIFVE 80
>gi|194337130|ref|YP_002018924.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309607|gb|ACF44307.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 90
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 50/73 (68%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++++ T++ L DAFS+FGQV A+II D RSKG+G+V E EA++A+ MN K
Sbjct: 7 NLAYTVTEDDLRDAFSEFGQVESASIINDKFSGRSKGFGFVDMPNESEAREAIESMNEKD 66
Query: 124 LDGRVIFVDNVRP 136
L+GR I V+ +P
Sbjct: 67 LNGRTIKVNEAKP 79
>gi|449494871|ref|XP_004159670.1| PREDICTED: cold-inducible RNA-binding protein B-like [Cucumis
sativus]
Length = 95
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L + FS FG ++EA +I D R KG+G+VT + EA+KAL M+G+++DGR+
Sbjct: 18 TTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAEAKKALKAMDGRIVDGRL 77
Query: 129 IFVD 132
IFV+
Sbjct: 78 IFVE 81
>gi|224110196|ref|XP_002315444.1| predicted protein [Populus trichocarpa]
gi|222864484|gb|EEF01615.1| predicted protein [Populus trichocarpa]
Length = 311
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T+++ L AF FG++ E IIMD RSKGY +V +TEE A AL +MNGK+
Sbjct: 225 GLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVKYTTEEAASSALKEMNGKI 284
Query: 124 LDGRVIFVD 132
++G +I VD
Sbjct: 285 INGWMIVVD 293
>gi|223974749|gb|ACN31562.1| unknown [Zea mays]
Length = 326
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STEE + A+
Sbjct: 8 YRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIE 67
Query: 118 DMNGKLLDGRVIFVDNVR 135
MNGK LDGR I V+ +
Sbjct: 68 GMNGKELDGRNITVNEAQ 85
>gi|226532482|ref|NP_001150574.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|195640298|gb|ACG39617.1| glycine-rich RNA-binding protein 7 [Zea mays]
Length = 253
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Query: 61 RCIS--------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEA 112
RC+S +S+ T L D F+++GQV EA II+D RS+G+G++T ++ EEA
Sbjct: 29 RCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTSSEEA 88
Query: 113 QKALVDMNGKLLDGRVIFVDNV 134
A+ M+GK LDGR I V++
Sbjct: 89 SAAITAMDGKTLDGRNIRVNHA 110
>gi|357122488|ref|XP_003562947.1| PREDICTED: uncharacterized RNA-binding protein C25G10.01-like
[Brachypodium distachyon]
Length = 138
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT + L +AFS+FGQVTEA +I D S+G+G+V +T EEA + + M+GK LDG V
Sbjct: 51 TTTDGLREAFSKFGQVTEARVITDRISGYSRGFGFVKYATVEEAGEGIKGMDGKFLDGWV 110
Query: 129 IFVDNVRPSRRYNTDASLARQPAQS 153
IF + + A+QP QS
Sbjct: 111 IFAEYAKQRE--------AQQPPQS 127
>gi|363543257|ref|NP_001241843.1| uncharacterized protein LOC100857047 [Zea mays]
gi|238007748|gb|ACR34909.1| unknown [Zea mays]
gi|413916459|gb|AFW56391.1| putative glycine-rich protein [Zea mays]
Length = 261
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Query: 61 RCIS--------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEA 112
RC+S +S+ T L D F+++GQV EA II+D RS+G+G++T ++ EEA
Sbjct: 26 RCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTSSEEA 85
Query: 113 QKALVDMNGKLLDGRVIFVDNV 134
A+ M+GK LDGR I V++
Sbjct: 86 SAAITAMDGKTLDGRNIRVNHA 107
>gi|171056877|ref|YP_001789226.1| RNP-1 like RNA-binding protein [Leptothrix cholodnii SP-6]
gi|170774322|gb|ACB32461.1| RNP-1 like RNA-binding protein [Leptothrix cholodnii SP-6]
Length = 157
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++++S E L +AFSQFG V A ++MD RSKG+G+V ++ EAQ A+ +NG+
Sbjct: 9 NLAYSVRDEDLNEAFSQFGAVNSAKVMMDRETGRSKGFGFVEMGSDPEAQAAINGLNGQA 68
Query: 124 LDGRVIFVDNVRP 136
+ GR I V+ RP
Sbjct: 69 IGGRAIVVNEARP 81
>gi|242083506|ref|XP_002442178.1| hypothetical protein SORBIDRAFT_08g015580 [Sorghum bicolor]
gi|241942871|gb|EES16016.1| hypothetical protein SORBIDRAFT_08g015580 [Sorghum bicolor]
Length = 250
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 7/81 (8%)
Query: 61 RCIS-------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQ 113
RC+S +S+ T L D F+++G+V EA II+D RS+G+G+VT ++ EEA
Sbjct: 26 RCMSSKLFVGGLSYGTDDHSLRDEFAKYGEVIEARIILDRESGRSRGFGFVTYTSSEEAS 85
Query: 114 KALVDMNGKLLDGRVIFVDNV 134
A+ M+GK LDGR I V++
Sbjct: 86 AAITAMDGKTLDGRSIRVNHA 106
>gi|15231311|ref|NP_190188.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7630030|emb|CAB88326.1| RNA binding protein-like [Arabidopsis thaliana]
gi|46931202|gb|AAT06405.1| At3g46020 [Arabidopsis thaliana]
gi|50253530|gb|AAT71967.1| At3g46020 [Arabidopsis thaliana]
gi|332644581|gb|AEE78102.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 102
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 46/64 (71%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT + L FS FGQ+ EA +I D R KG+G++T +E++A+KAL ++GK++DGR+
Sbjct: 18 TTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRL 77
Query: 129 IFVD 132
IFV+
Sbjct: 78 IFVE 81
>gi|297830792|ref|XP_002883278.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297329118|gb|EFH59537.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 376
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T+++ L AF FG++ E IIMD RSKGY ++ +TEE A AL +MNGK+
Sbjct: 290 GLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAASAALKEMNGKI 349
Query: 124 LDGRVIFVD--NVRPSRR 139
++G +I VD +P R+
Sbjct: 350 INGWMIVVDVAKTKPFRQ 367
>gi|18402803|ref|NP_566672.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|20466724|gb|AAM20679.1| unknown protein [Arabidopsis thaliana]
gi|21536799|gb|AAM61131.1| unknown [Arabidopsis thaliana]
gi|25084257|gb|AAN72206.1| unknown protein [Arabidopsis thaliana]
gi|332642921|gb|AEE76442.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 374
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T+++ L AF FG++ E IIMD RSKGY ++ +TEE A AL +MNGK+
Sbjct: 288 GLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKI 347
Query: 124 LDGRVIFVD--NVRPSRRYNTDASLA 147
++G +I VD +P R+ + S
Sbjct: 348 INGWMIVVDVAKTKPFRQNRSQPSFG 373
>gi|296811816|ref|XP_002846246.1| glycine-rich RNA-binding protein [Arthroderma otae CBS 113480]
gi|238843634|gb|EEQ33296.1| glycine-rich RNA-binding protein [Arthroderma otae CBS 113480]
Length = 133
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT + L D FS+FG + EA ++ D NRS+G+G+V S E EA AL MN +
Sbjct: 10 GLAWHTTDDTLRDGFSKFGTIEEAIVVKDRDTNRSRGFGFVRFSNESEADAALNAMNNQE 69
Query: 124 LDGRVIFVD 132
DGRVI VD
Sbjct: 70 FDGRVIRVD 78
>gi|226496497|ref|NP_001150207.1| LOC100283837 [Zea mays]
gi|195621336|gb|ACG32498.1| nucleolin [Zea mays]
gi|195637560|gb|ACG38248.1| nucleolin [Zea mays]
gi|223948323|gb|ACN28245.1| unknown [Zea mays]
gi|413917478|gb|AFW57410.1| nucleolin [Zea mays]
Length = 140
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L +AF++FG+V A ++ D SKG+G+V +T EEA K + +GK LDG V
Sbjct: 46 TTSEGLREAFAEFGEVLHARVVTDRVSGFSKGFGFVRYATTEEAAKGIEGKDGKFLDGWV 105
Query: 129 IFVDNVRPSRRYNTDASLARQPAQS 153
IF + +P R + + QP QS
Sbjct: 106 IFAEYAKP-RPPPEETGMNSQPQQS 129
>gi|116781810|gb|ABK22248.1| unknown [Picea sitchensis]
Length = 215
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC +S+ST+ L DAF +FG + EA +++D RS+G+G+VT ++ + A+
Sbjct: 7 YRCFVGGLSWSTSDRTLEDAFHKFGHLIEAKVVVDRDTGRSRGFGFVTFDDKKSMEDAID 66
Query: 118 DMNGKLLDGRVIFVDNVRP 136
M+G LDGR I VD RP
Sbjct: 67 SMHGMSLDGRSITVDRARP 85
>gi|6911146|gb|AAF31404.1|AF200323_1 putative glycine-rich RNA-binding protein 2 [Catharanthus roseus]
Length = 160
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 52 MQLVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTE 109
M +V F RC ++++TT + L++AFSQ+G+V E+ +I D RS+G+G+VT E
Sbjct: 1 MASADVEF-RCFVGGLAWATTDQSLSEAFSQYGEVLESKVINDRETGRSRGFGFVTFGDE 59
Query: 110 EEAQKALVDMNGKLLDGRVIFVD 132
+ + A+V MNG+ LDGR I V+
Sbjct: 60 KSMKDAIVGMNGQTLDGRNITVN 82
>gi|357445711|ref|XP_003593133.1| Glycine-rich RNA-binding protein [Medicago truncatula]
gi|355482181|gb|AES63384.1| Glycine-rich RNA-binding protein [Medicago truncatula]
Length = 491
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 52 MQLVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTE 109
Q+ + +RC +++ST+ L DAF ++G++ EA +++D RS+G+G+VT +
Sbjct: 221 FQMSDTDEFRCFIGGLAWSTSDRRLKDAFEKYGKLVEAKVVVDKFSGRSRGFGFVTFDDK 280
Query: 110 EEAQKALVDMNGKLLDGRVIFVDNVRP 136
E ++A+ MNG LDGR I VD +P
Sbjct: 281 EAMEEAIEAMNGIDLDGRTITVDKAQP 307
>gi|449435011|ref|XP_004135289.1| PREDICTED: cold-inducible RNA-binding protein B-like isoform 1
[Cucumis sativus]
gi|449435013|ref|XP_004135290.1| PREDICTED: cold-inducible RNA-binding protein B-like isoform 2
[Cucumis sativus]
Length = 89
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L + FS FG ++EA +I D R KG+G+VT + EA+KAL M+G+++DGR+
Sbjct: 18 TTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAEAKKALKAMDGRIVDGRL 77
Query: 129 IFVD 132
IFV+
Sbjct: 78 IFVE 81
>gi|59802519|gb|AAX07503.1| unknown [Gemmata sp. Wa1-1]
Length = 122
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 48/75 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ T L D F+ +G V A +IMD RSKG+G+V T++EAQ A+ M+G++
Sbjct: 46 NLSWGVTDSQLQDMFTPYGSVVSAQVIMDRDTGRSKGFGFVEMGTDQEAQAAITGMHGQV 105
Query: 124 LDGRVIFVDNVRPSR 138
++GR + V+ RP +
Sbjct: 106 IEGRPLTVNEARPKK 120
>gi|255584774|ref|XP_002533105.1| cold-inducible RNA binding protein, putative [Ricinus communis]
gi|223527096|gb|EEF29277.1| cold-inducible RNA binding protein, putative [Ricinus communis]
Length = 94
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT + L FS FG V EA +++D + KG+G+VT +E +AQKAL MNG+++DGR+
Sbjct: 18 TTNQKLEKLFSPFGIVKEARLVLDPRTQKPKGFGFVTFDSESQAQKALKAMNGRIVDGRL 77
Query: 129 IFVDNVRPSRRYNTDAS 145
+FV+ V S DAS
Sbjct: 78 LFVE-VAKSINSGEDAS 93
>gi|212275199|ref|NP_001130054.1| uncharacterized protein LOC100191146 [Zea mays]
gi|194688180|gb|ACF78174.1| unknown [Zea mays]
gi|414878270|tpg|DAA55401.1| TPA: glycine-rich RNA-binding protein 7 [Zea mays]
Length = 254
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 7/81 (8%)
Query: 61 RCIS-------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQ 113
RC+S +S+ T L D F+++GQV EA II+D RS+G+G+VT ++ EEA
Sbjct: 26 RCMSSKLFVGGISYQTDDHSLRDEFAKYGQVIEARIIIDRESGRSRGFGFVTYTSSEEAS 85
Query: 114 KALVDMNGKLLDGRVIFVDNV 134
A+ ++GK LDGR I V++
Sbjct: 86 AAITALDGKTLDGRSIRVNHA 106
>gi|238011394|gb|ACR36732.1| unknown [Zea mays]
Length = 149
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STEE + A+
Sbjct: 8 YRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 68 GMNGKELDGRNITVN 82
>gi|219888685|gb|ACL54717.1| unknown [Zea mays]
gi|414869098|tpg|DAA47655.1| TPA: glycine-rich protein1 [Zea mays]
Length = 144
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STEE + A+
Sbjct: 8 YRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 68 GMNGKELDGRNITVN 82
>gi|195612516|gb|ACG28088.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|414869096|tpg|DAA47653.1| TPA: glycine-rich protein1 isoform 1 [Zea mays]
gi|414869097|tpg|DAA47654.1| TPA: glycine-rich protein1 isoform 2 [Zea mays]
Length = 155
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STEE + A+
Sbjct: 8 YRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 68 GMNGKELDGRNITVN 82
>gi|195609654|gb|ACG26657.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195612080|gb|ACG27870.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195612572|gb|ACG28116.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 156
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STEE + A+
Sbjct: 8 YRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 68 GMNGKELDGRNITVN 82
>gi|121596409|ref|YP_988305.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|120608489|gb|ABM44229.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
Length = 149
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S + L AFSQFG VT A ++M+ RSKG+G+V ++ EAQ+A+ MNG+
Sbjct: 9 NLPYSVRDQDLEQAFSQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQEAINGMNGQS 68
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ RP
Sbjct: 69 LGGRSIVVNEARP 81
>gi|226506948|ref|NP_001149776.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|195633803|gb|ACG36746.1| glycine-rich RNA-binding protein 7 [Zea mays]
Length = 276
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 7/81 (8%)
Query: 61 RCIS-------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQ 113
RC+S +S+ T L D F+++GQV EA II+D RS+G+G+VT ++ EEA
Sbjct: 26 RCMSSKLFVGGISYQTDDHSLRDEFAKYGQVIEARIIIDRESGRSRGFGFVTYTSSEEAS 85
Query: 114 KALVDMNGKLLDGRVIFVDNV 134
A+ ++GK LDGR I V++
Sbjct: 86 AAITALDGKTLDGRSIRVNHA 106
>gi|224124176|ref|XP_002319264.1| predicted protein [Populus trichocarpa]
gi|118487492|gb|ABK95573.1| unknown [Populus trichocarpa]
gi|222857640|gb|EEE95187.1| predicted protein [Populus trichocarpa]
Length = 149
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 11/94 (11%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S TT E L +AFS+FG+V +A ++ D SKG+G+V T E+A + + M+G+
Sbjct: 60 GLSKRTTTEGLQEAFSKFGEVVQAKVVTDRTSGYSKGFGFVRYGTLEDAAEGIKGMDGQF 119
Query: 124 LDGRVIFVDNVRPSRRYNTDASLARQPAQSPEEN 157
LDG VIF + RP +QP P+ N
Sbjct: 120 LDGWVIFAEYARP-----------KQPPSQPQNN 142
>gi|356543191|ref|XP_003540046.1| PREDICTED: nucleolin-like [Glycine max]
Length = 145
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L + F++FG+V A ++ D SKG+G+V +T EEA K + M+GK LDG V
Sbjct: 60 TTTERLREEFAKFGEVVHARVVTDRVSGYSKGFGFVQYATIEEAAKGIEGMDGKFLDGWV 119
Query: 129 IFVDNVRP 136
IF + RP
Sbjct: 120 IFAEYARP 127
>gi|223942615|gb|ACN25391.1| unknown [Zea mays]
Length = 120
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STEE + A+
Sbjct: 8 YRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 68 GMNGKELDGRNITVN 82
>gi|388494768|gb|AFK35450.1| unknown [Medicago truncatula]
Length = 176
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
VS+ST + L +AFS++G V +A IIMD RS+G+G++T +T EEA AL M+ K
Sbjct: 46 GVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQAMDNKE 105
Query: 124 LDGRVIFVD 132
LDGR + V+
Sbjct: 106 LDGRTVRVN 114
>gi|333381249|ref|ZP_08472931.1| hypothetical protein HMPREF9455_01097 [Dysgonomonas gadei ATCC
BAA-286]
gi|332830219|gb|EGK02847.1| hypothetical protein HMPREF9455_01097 [Dysgonomonas gadei ATCC
BAA-286]
Length = 107
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+S L D FS++G++T A +IMD RSKGYG+V + QKA+ ++NG
Sbjct: 7 GLSYSINDNDLKDLFSEYGEITSAKVIMDKATGRSKGYGFVELADNAAGQKAIEELNGAE 66
Query: 124 LDGRVIFVDNVRP 136
DGR I V RP
Sbjct: 67 YDGRTISVSEARP 79
>gi|222112647|ref|YP_002554911.1| rnp-1 like RNA-binding protein [Acidovorax ebreus TPSY]
gi|221732091|gb|ACM34911.1| RNP-1 like RNA-binding protein [Acidovorax ebreus TPSY]
Length = 155
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S + L AFSQFG VT A ++M+ RSKG+G+V ++ EAQ+A+ MNG+
Sbjct: 9 NLPYSVRDQDLEQAFSQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQEAINGMNGQS 68
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ RP
Sbjct: 69 LGGRSIVVNEARP 81
>gi|302814001|ref|XP_002988685.1| hypothetical protein SELMODRAFT_18499 [Selaginella moellendorffii]
gi|300143506|gb|EFJ10196.1| hypothetical protein SELMODRAFT_18499 [Selaginella moellendorffii]
Length = 135
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 57 VSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQK 114
V +RC +S++TT L DAFS +G V EA +++D RS+G+G+VT E Q
Sbjct: 5 VDEFRCFVGGLSWATTDRNLEDAFSPYGTVIEAKVVLDRDTERSRGFGFVTFGDENSMQD 64
Query: 115 ALVDMNGKLLDGRVIFVDNVRP 136
A+ M+GK LDGR I V +P
Sbjct: 65 AIDGMHGKDLDGRSITVSKAQP 86
>gi|315057077|ref|XP_003177913.1| hypothetical protein MGYG_01973 [Arthroderma gypseum CBS 118893]
gi|311339759|gb|EFQ98961.1| hypothetical protein MGYG_01973 [Arthroderma gypseum CBS 118893]
Length = 152
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT + L + FSQFG + EA ++ D NRS+G+G+V S+E EA AL MN +
Sbjct: 10 GLAWHTTDDTLREGFSQFGTIEEAIVVKDRDTNRSRGFGFVRFSSEAEADAALNAMNNQE 69
Query: 124 LDGRVIFVD 132
DGRVI VD
Sbjct: 70 FDGRVIRVD 78
>gi|302762278|ref|XP_002964561.1| hypothetical protein SELMODRAFT_81392 [Selaginella moellendorffii]
gi|302814304|ref|XP_002988836.1| hypothetical protein SELMODRAFT_128832 [Selaginella moellendorffii]
gi|300143407|gb|EFJ10098.1| hypothetical protein SELMODRAFT_128832 [Selaginella moellendorffii]
gi|300168290|gb|EFJ34894.1| hypothetical protein SELMODRAFT_81392 [Selaginella moellendorffii]
Length = 149
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 48/69 (69%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ T + L DAFS FG++ E +I D RS+G+G+V+ T++EAQKA+ M+G++
Sbjct: 43 GLAWGTEERGLRDAFSPFGEIIEVRVIQDRETGRSRGFGFVSYITDQEAQKAMEAMDGRV 102
Query: 124 LDGRVIFVD 132
LDGR I V+
Sbjct: 103 LDGRTIRVN 111
>gi|195654321|gb|ACG46628.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|238010482|gb|ACR36276.1| unknown [Zea mays]
Length = 252
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 7/81 (8%)
Query: 61 RCIS-------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQ 113
RC+S +S+ T L D F+++GQV EA II+D RS+G+G+VT ++ EEA
Sbjct: 26 RCMSSKLFVGGISYQTDDHSLRDEFAKYGQVIEARIIIDRESGRSRGFGFVTYTSSEEAS 85
Query: 114 KALVDMNGKLLDGRVIFVDNV 134
A+ ++GK LDGR I V++
Sbjct: 86 AAITALDGKTLDGRSIRVNHA 106
>gi|116747535|ref|YP_844222.1| RNP-1 like RNA-binding protein [Syntrophobacter fumaroxidans MPOB]
gi|116696599|gb|ABK15787.1| RNP-1 like RNA-binding protein [Syntrophobacter fumaroxidans MPOB]
Length = 122
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 48/72 (66%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF T+ E L + FSQ G V AT++ D RS+G+G+V ST+EE QKA+ ++NGK
Sbjct: 9 NLSFQTSSEQLRELFSQVGTVESATVVEDRESGRSRGFGFVEMSTKEEGQKAIAELNGKD 68
Query: 124 LDGRVIFVDNVR 135
+GR + V+ +
Sbjct: 69 FNGRPLTVNEAK 80
>gi|326493798|dbj|BAJ85361.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 175
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFSQ+G++ +A II D RS+G+G+VT +EE ++A+
Sbjct: 6 YRCFVGGLAWATDDHNLQAAFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMRQAIE 65
Query: 118 DMNGKLLDGRVIFVDNVRPSR 138
+MNGK LDGR I V+ + R
Sbjct: 66 EMNGKELDGRSITVNEAQSRR 86
>gi|357442985|ref|XP_003591770.1| RNA-binding protein [Medicago truncatula]
gi|355480818|gb|AES62021.1| RNA-binding protein [Medicago truncatula]
Length = 284
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T+++ L AF FG++ E +I+D RSKGY ++ +TEE A AL +MNGK+
Sbjct: 198 GLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKEMNGKI 257
Query: 124 LDGRVIFVDNVRPS-RRYN 141
++G +I VD + + RYN
Sbjct: 258 INGWMIVVDVAKTTPPRYN 276
>gi|381206512|ref|ZP_09913583.1| RNA-binding protein [SAR324 cluster bacterium JCVI-SC AAA005]
Length = 85
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++FS +++ L AFSQFG+V++A++IMD NRSKG+G+V E A+ +NG
Sbjct: 7 NLAFSVSEDQLRSAFSQFGKVSKASVIMDRVNNRSKGFGFVEMDDAAEGNSAVEALNGHQ 66
Query: 124 LDGRVIFVDNVRPSRR 139
+DGR V+ +P +
Sbjct: 67 IDGRAWKVNEAKPREK 82
>gi|195155759|ref|XP_002018768.1| GL25979 [Drosophila persimilis]
gi|194114921|gb|EDW36964.1| GL25979 [Drosophila persimilis]
Length = 289
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 46/79 (58%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F T+EML F FG++ +IMD NRSKGYG++T E+A+KAL +NG
Sbjct: 35 SLHFDITEEMLRGIFEPFGKIDAIQLIMDTETNRSKGYGFITYHNAEDAKKALEQLNGFE 94
Query: 124 LDGRVIFVDNVRPSRRYNT 142
L GR + V NV NT
Sbjct: 95 LAGRPMKVGNVTERLDMNT 113
>gi|119177425|ref|XP_001240490.1| hypothetical protein CIMG_07653 [Coccidioides immitis RS]
gi|320032129|gb|EFW14085.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
gi|392867546|gb|EAS29215.2| hypothetical protein CIMG_07653 [Coccidioides immitis RS]
Length = 147
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT E L FS+FG + EA ++ D NRS+G+G+V ++E EA+ A+ +MN +
Sbjct: 8 GLAWHTTDETLRQGFSKFGSIEEAIVVKDRDTNRSRGFGFVRFASEGEAEAAMNEMNNQE 67
Query: 124 LDGRVIFVDNV--RPS 137
DGR I VD RPS
Sbjct: 68 FDGRTIRVDKAADRPS 83
>gi|378727388|gb|EHY53847.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 179
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT E L + FSQFG + EA ++ D NRS+G+G+V +T+ EA +A+ MN
Sbjct: 8 GLAWHTTDETLYEGFSQFGNIEEAVVVKDRDTNRSRGFGFVRFATKAEADEAMQRMNNTQ 67
Query: 124 LDGRVIFVDNVRPS 137
DGR+I VD+ + S
Sbjct: 68 FDGRLIRVDHAQDS 81
>gi|223647416|gb|ACN10466.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 193
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF TT+E LA+AF+++G + + +I D RS+G+G+V E+A+ AL MNGK
Sbjct: 11 GLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKDALEGMNGKS 70
Query: 124 LDGRVIFVD 132
+DGR I VD
Sbjct: 71 VDGRTIRVD 79
>gi|4455315|emb|CAB36850.1| RNA-binding protein like [Arabidopsis thaliana]
gi|7268090|emb|CAB78428.1| RNA-binding protein like [Arabidopsis thaliana]
Length = 126
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 66/113 (58%), Gaps = 12/113 (10%)
Query: 31 PYQVVNYFSLHCIVRPSSDLIMQLVNVSF---WRCISVSF---------STTKEMLADAF 78
P+ + + C+++P+ D+ + L +S ++ + +F +TT +ML +AF
Sbjct: 3 PFSIPPKLLILCLLKPNFDIHLSLFKISLKHGYQGLRRNFVTIASDLSPTTTDDMLREAF 62
Query: 79 SQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
S +G V +A ++ D +RS+G+G+VT S+ EA+ A+ M+GK L+GR + V
Sbjct: 63 SGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSV 115
>gi|124268989|ref|YP_001022993.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
gi|124261764|gb|ABM96758.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
Length = 162
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++++S + L AF +FG VT A ++MD RSKG+G+V ++ EAQ A+ MNG+
Sbjct: 9 NLAYSVRDDDLQQAFGEFGAVTSAKVMMDRDTGRSKGFGFVEMGSDAEAQAAIEGMNGQS 68
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ RP
Sbjct: 69 LSGRAIVVNEARP 81
>gi|303668381|gb|ADM16300.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 121
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF TT+E LA+AF+++G + + +I D RS+G+G+V E+A+ AL MNGK
Sbjct: 11 GLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKDALDGMNGKS 70
Query: 124 LDGRVIFVD 132
+DGR I VD
Sbjct: 71 VDGRTIRVD 79
>gi|302809382|ref|XP_002986384.1| hypothetical protein SELMODRAFT_49298 [Selaginella moellendorffii]
gi|300145920|gb|EFJ12593.1| hypothetical protein SELMODRAFT_49298 [Selaginella moellendorffii]
Length = 145
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC +S++TT L DAFS +G V EA +++D RS+G+G+VT E Q A+
Sbjct: 3 RCFVGGLSWATTDRNLEDAFSPYGTVIEAKVVLDRDTERSRGFGFVTFGDENSMQDAIDG 62
Query: 119 MNGKLLDGRVIFVDNVRP 136
M+GK LDGR I V +P
Sbjct: 63 MHGKDLDGRSITVSKAQP 80
>gi|303315989|ref|XP_003067999.1| Glycine-rich RNA-binding protein 2, mitochondrial precursor ,
putative [Coccidioides posadasii C735 delta SOWgp]
gi|240107675|gb|EER25854.1| Glycine-rich RNA-binding protein 2, mitochondrial precursor ,
putative [Coccidioides posadasii C735 delta SOWgp]
Length = 117
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT E L FS+FG + EA ++ D NRS+G+G+V ++E EA+ A+ +MN +
Sbjct: 8 GLAWHTTDETLRQGFSKFGSIEEAIVVKDRDTNRSRGFGFVRFASEGEAEAAMNEMNNQE 67
Query: 124 LDGRVIFVDNV--RPS 137
DGR I VD RPS
Sbjct: 68 FDGRTIRVDKAADRPS 83
>gi|115529229|dbj|BAF34340.1| putative glycine-rich RNA-binding protein [Dianthus caryophyllus]
Length = 163
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC +S+ T LA+AF++FG+VT++ II D RS+G+G+VT + E+ + A+
Sbjct: 6 YRCFVGGLSWGTDDRSLAEAFNKFGEVTDSKIINDRETGRSRGFGFVTFANEQSMRDAID 65
Query: 118 DMNGKLLDGRVIFVD 132
+MNGK LDGR I V+
Sbjct: 66 EMNGKELDGRSITVN 80
>gi|223938031|ref|ZP_03629929.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223893245|gb|EEF59708.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 114
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF T+ + D F+Q G VTE +IMD R++G+G+VT ST+E A A+ ++NGK
Sbjct: 8 NLSFDATENDVQDLFAQHGPVTEVNLIMDKMTGRARGFGFVTMSTKEGADAAVQNLNGKQ 67
Query: 124 LDGRVIFVDNVRP 136
GR + V+ RP
Sbjct: 68 WQGRALTVNEARP 80
>gi|62857699|ref|NP_001017228.1| cold-inducible RNA-binding protein [Xenopus (Silurana) tropicalis]
gi|123910273|sp|Q28IQ9.1|CIRBP_XENTR RecName: Full=Cold-inducible RNA-binding protein; AltName:
Full=Glycine-rich RNA-binding protein CIRP
gi|89268649|emb|CAJ83306.1| cold inducible RNA binding protein [Xenopus (Silurana) tropicalis]
Length = 166
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F TT+E L FS++GQV E ++ D RS+G+G+VT E+A+ A++ MNGK
Sbjct: 12 GLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|332525684|ref|ZP_08401833.1| RNA-binding region RNP-1 [Rubrivivax benzoatilyticus JA2]
gi|332109243|gb|EGJ10166.1| RNA-binding region RNP-1 [Rubrivivax benzoatilyticus JA2]
Length = 145
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L AF+QFG VT A ++MD RSKG+G+V ++ EAQ A+ MNG+ L+GR + V+
Sbjct: 6 LQQAFAQFGTVTSAKVMMDRETGRSKGFGFVEMGSDAEAQAAINGMNGQSLEGRAVVVNE 65
Query: 134 VRP 136
RP
Sbjct: 66 ARP 68
>gi|974605|gb|AAA75104.1| single-stranded nucleic acid binding protein [Triticum aestivum]
Length = 167
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFSQ+G++ +A II D RS+G+G+VT +EE ++A+
Sbjct: 6 YRCFVGGLAWATDDNNLQQAFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMRQAIE 65
Query: 118 DMNGKLLDGRVIFVDNVRPSR 138
+MNGK LDGR I V+ + R
Sbjct: 66 EMNGKELDGRNITVNEAQSRR 86
>gi|115472673|ref|NP_001059935.1| Os07g0549800 [Oryza sativa Japonica Group]
gi|28564803|dbj|BAC57733.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Japonica Group]
gi|113611471|dbj|BAF21849.1| Os07g0549800 [Oryza sativa Japonica Group]
gi|125600644|gb|EAZ40220.1| hypothetical protein OsJ_24665 [Oryza sativa Japonica Group]
gi|215767980|dbj|BAH00209.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 133
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT + L +AFS+FGQV EA +I D S+G+G+V +T EEA + + M+GK LDG V
Sbjct: 46 TTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGMDGKFLDGWV 105
Query: 129 IFVDNVRPSRRYNTDASLARQPAQ 152
IF + + A+QPAQ
Sbjct: 106 IFAEYAKQRE--------AQQPAQ 121
>gi|225435044|ref|XP_002284323.1| PREDICTED: cold-inducible RNA-binding protein [Vitis vinifera]
gi|297746123|emb|CBI16179.3| unnamed protein product [Vitis vinifera]
Length = 112
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L + FS FG VT+A +I D R KG+G+V +E +A+KAL MNG+++ GR+
Sbjct: 36 TTNEELIEMFSPFGVVTQARLIKDPKTQRPKGFGFVKFESEVDAEKALKAMNGRIVRGRL 95
Query: 129 IFVDNVRPSR 138
IFV+ + +R
Sbjct: 96 IFVEIAKTTR 105
>gi|356550257|ref|XP_003543504.1| PREDICTED: cold-inducible RNA-binding protein-like [Glycine max]
Length = 86
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 47/68 (69%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+SF TT+E L FS FG VT+A + +D R KG+G+V+ +E EA+KA MNG+++
Sbjct: 14 LSFYTTQEQLKKLFSPFGLVTQADLALDPITKRPKGFGFVSFKSEIEAEKACKAMNGRIV 73
Query: 125 DGRVIFVD 132
+GR+I V+
Sbjct: 74 NGRLILVE 81
>gi|78189511|ref|YP_379849.1| RNA recognition motif-containing protein [Chlorobium
chlorochromatii CaD3]
gi|78171710|gb|ABB28806.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
chlorochromatii CaD3]
Length = 90
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 48/73 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++++S T+ L DAF QFGQV A+II D RSKG+G+V + EA++A+ MN K
Sbjct: 7 NLAYSVTENDLRDAFGQFGQVESASIITDKFSGRSKGFGFVDMPNDSEAREAIGAMNEKE 66
Query: 124 LDGRVIFVDNVRP 136
L+GR I V+ +P
Sbjct: 67 LNGRPIKVNEAKP 79
>gi|226500552|ref|NP_001148723.1| ELAV-like protein 4 [Zea mays]
gi|195621654|gb|ACG32657.1| ELAV-like protein 4 [Zea mays]
Length = 127
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L +AFS+FGQV EA +I D S+G+G+V +T +EA +A+ M+GK LDG V
Sbjct: 45 TTSEGLKEAFSKFGQVIEARVITDRISGYSRGFGFVKYATVQEAGEAIEGMDGKFLDGWV 104
Query: 129 IFVDNVRPSRRYNTDASLARQPA 151
IF + + +R T S PA
Sbjct: 105 IFAEYAK--QREATQPSQQGAPA 125
>gi|167383625|ref|XP_001736605.1| cold-inducible RNA-binding protein [Entamoeba dispar SAW760]
gi|165900936|gb|EDR27150.1| cold-inducible RNA-binding protein, putative [Entamoeba dispar
SAW760]
Length = 138
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 49/73 (67%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+++S T E L AF +FG VT+ ++ D RSKG+G+VT +E+A+KA+ +MN +
Sbjct: 8 SLAYSVTDESLRAAFEKFGTVTDCKVVTDRESQRSKGFGFVTFEKDEDAKKAIEEMNEQE 67
Query: 124 LDGRVIFVDNVRP 136
L+GR I VD +P
Sbjct: 68 LEGRRIKVDVSKP 80
>gi|225461185|ref|XP_002283144.1| PREDICTED: glycine-rich RNA-binding protein 2 [Vitis vinifera]
gi|147854770|emb|CAN78606.1| hypothetical protein VITISV_024164 [Vitis vinifera]
gi|302143178|emb|CBI20473.3| unnamed protein product [Vitis vinifera]
Length = 135
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 12/89 (13%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L +AFS+FGQV A ++ D SKG+G+V + E+A + + M+GK LDG V
Sbjct: 52 TTSEGLHEAFSKFGQVVNARVVTDRVSGYSKGFGFVRYVSLEDAAEGIKGMDGKFLDGWV 111
Query: 129 IFVDNVRPSRRYNTDASLARQPAQSPEEN 157
IF + RP +P SP+ N
Sbjct: 112 IFAEYARP------------RPPPSPQNN 128
>gi|406944721|gb|EKD76419.1| hypothetical protein ACD_43C00118G0001 [uncultured bacterium]
Length = 84
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 46/76 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F +T + L +AF Q G V A IIMD RS+G+G+V ST EEAQ A+ +GK
Sbjct: 9 GIAFKSTDDTLREAFMQAGNVVSAKIIMDKMTGRSRGFGFVEMSTPEEAQAAIQMWDGKE 68
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I V +P +
Sbjct: 69 LDGRRIAVKEAQPREK 84
>gi|333030558|ref|ZP_08458619.1| RNP-1 like RNA-binding protein [Bacteroides coprosuis DSM 18011]
gi|332741155|gb|EGJ71637.1| RNP-1 like RNA-binding protein [Bacteroides coprosuis DSM 18011]
Length = 104
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+SF+ E LA+ F +G VT A +I D NRSKG+G+V +E A KA+ ++NG
Sbjct: 7 SLSFNVNDEGLAEIFEPYGAVTSARVIKDKFTNRSKGFGFVEMEDDEAATKAINELNGAE 66
Query: 124 LDGRVIFVDNVRP 136
+DGR I V RP
Sbjct: 67 VDGRPIAVSEARP 79
>gi|196232841|ref|ZP_03131691.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
gi|196223040|gb|EDY17560.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
Length = 107
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 50/73 (68%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF TT+ L D F++ G V+EAT++ D +S+G+G+VT S+ EEAQKA+ +GK
Sbjct: 9 NLSFDTTEMDLQDTFAEAGTVSEATLMQDKFTGKSRGFGFVTMSSSEEAQKAIDLFHGKT 68
Query: 124 LDGRVIFVDNVRP 136
+ GR + V+ RP
Sbjct: 69 VQGRALTVNEARP 81
>gi|125558733|gb|EAZ04269.1| hypothetical protein OsI_26412 [Oryza sativa Indica Group]
Length = 133
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT + L +AFS+FGQV EA +I D S+G+G+V +T EEA + + M+GK LDG V
Sbjct: 46 TTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGMDGKFLDGWV 105
Query: 129 IFVDNVRPSRRYNTDASLARQPAQ 152
IF + + A+QPAQ
Sbjct: 106 IFAEYAKQRE--------AQQPAQ 121
>gi|728594|emb|CAA88558.1| glycine rich protein, RNA binding protein [Hordeum vulgare subsp.
vulgare]
Length = 173
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFSQ+G++ +A II D RS+G+G+VT +EE ++A+
Sbjct: 6 YRCFVGGLAWATDDHNLQAAFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMRQAIE 65
Query: 118 DMNGKLLDGRVIFVDNVRPSR 138
+MNGK LDGR + V+ + R
Sbjct: 66 EMNGKELDGRQVTVNEAQSRR 86
>gi|297793541|ref|XP_002864655.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297310490|gb|EFH40914.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 95
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT + L F+ FGQ+ EA +I D R KG+G++T +E++AQ AL +NGK+++GR+
Sbjct: 18 TTDQSLRQLFAPFGQIIEARLIRDQQTQRPKGFGFITFESEDDAQNALKALNGKIVNGRL 77
Query: 129 IFVDNVR 135
IFV+ +
Sbjct: 78 IFVEAAK 84
>gi|46139099|ref|XP_391240.1| hypothetical protein FG11064.1 [Gibberella zeae PH-1]
Length = 127
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++TT E L FS+FG+VT++ I+ D R++G+G+VT STEE+A A+ +N +
Sbjct: 8 NLSWNTTDETLRQTFSEFGEVTDSIIMRDRDTGRARGFGFVTFSTEEQATAAVDALNEQE 67
Query: 124 LDGRVIFVD--NVRPS 137
LDGR I V+ N RP+
Sbjct: 68 LDGRRIRVNVANARPA 83
>gi|357457429|ref|XP_003598995.1| 28 kDa ribonucleoprotein [Medicago truncatula]
gi|355488043|gb|AES69246.1| 28 kDa ribonucleoprotein [Medicago truncatula]
Length = 447
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 53/75 (70%), Gaps = 2/75 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S++T ++ L+DAFS++GQV +A IIMD RSKG+G+VT +T EEA A+ ++G+
Sbjct: 50 GISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQALDGQD 109
Query: 124 LDGRVIFVD--NVRP 136
L GR + V+ N RP
Sbjct: 110 LYGRRVGVNFANERP 124
>gi|226509825|ref|NP_001150518.1| ELAV-like protein 4 [Zea mays]
gi|195639828|gb|ACG39382.1| ELAV-like protein 4 [Zea mays]
gi|414590519|tpg|DAA41090.1| TPA: ELAV-like protein 4 [Zea mays]
Length = 129
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L +AFS+FGQV EA +I D S+G+G+V +T +EA +A+ M+GK LD V
Sbjct: 45 TTSEGLKEAFSKFGQVIEARVITDRISGYSRGFGFVKYATVQEAGEAIKGMDGKFLDSWV 104
Query: 129 IFVDNVRPSRRYNTDASLARQPA 151
IF + P +N + L + A
Sbjct: 105 IFAET--PHNHHNKEHQLMIEVA 125
>gi|223936242|ref|ZP_03628155.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223895104|gb|EEF61552.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 103
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF T+ + D FS G V E +IMD R++G+G+VT +T E A+ A+ D+NGK
Sbjct: 9 NLSFKATENDIQDLFSAHGPVNEVNLIMDKMTGRARGFGFVTMATAEGAEAAIADLNGKE 68
Query: 124 LDGRVIFVDNVRP 136
GR + V+ RP
Sbjct: 69 WQGRALTVNEARP 81
>gi|115473215|ref|NP_001060206.1| Os07g0602600 [Oryza sativa Japonica Group]
gi|113611742|dbj|BAF22120.1| Os07g0602600 [Oryza sativa Japonica Group]
gi|222637411|gb|EEE67543.1| hypothetical protein OsJ_25023 [Oryza sativa Japonica Group]
Length = 238
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 7/78 (8%)
Query: 61 RCIS-------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQ 113
RC+S +S++T L D FS +G V EA II+D +SKGYG++T ++ EEA
Sbjct: 27 RCMSSKLFVGGLSYATDDTTLKDVFSHYGDVLEARIIIDRDTGKSKGYGFITYTSSEEAA 86
Query: 114 KALVDMNGKLLDGRVIFV 131
A+ M+GK L GR++ V
Sbjct: 87 AAVTAMDGKDLQGRIVRV 104
>gi|255565552|ref|XP_002523766.1| dc50, putative [Ricinus communis]
gi|223536978|gb|EEF38615.1| dc50, putative [Ricinus communis]
Length = 210
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC +S+ST+ L +AF +FG + EA +++D RS+G+G+VT ++ ++A+
Sbjct: 7 YRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIE 66
Query: 118 DMNGKLLDGRVIFVDNVRP 136
+MNG LDGR I VD +P
Sbjct: 67 EMNGMDLDGRTITVDKAQP 85
>gi|357144334|ref|XP_003573255.1| PREDICTED: uncharacterized protein LOC100824407 [Brachypodium
distachyon]
Length = 226
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 54 LVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEE 111
+ + +RC S+S+STT L DAF +FG+VTE +++D RS+G+G+VT ++
Sbjct: 1 MSDADEYRCFVGSLSWSTTDVDLKDAFGKFGRVTETKVVLDKYSGRSRGFGFVTFDDKKA 60
Query: 112 AQKALVDMNGKLLDGRVIFVDNVRP 136
++A+ MNG LDGR I V+ +P
Sbjct: 61 MEEAVEAMNGIDLDGRNITVERAQP 85
>gi|255944269|ref|XP_002562902.1| Pc20g03510 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587637|emb|CAP85680.1| Pc20g03510 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 151
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T+ + L + F QFG++ EA ++ D RS+G+G+V +T+ EA AL MN +
Sbjct: 5 GLSWHTSDDTLREGFQQFGEIQEAIVVKDRATQRSRGFGFVRFATDAEADAALGAMNNQE 64
Query: 124 LDGRVIFVDNV--RPSR 138
DGRVI VD RP R
Sbjct: 65 FDGRVIRVDKAFDRPQR 81
>gi|357126492|ref|XP_003564921.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Brachypodium distachyon]
Length = 156
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T L +AFS FG+V EA +I D RS+G+G+V S EE+A+KA M+G+
Sbjct: 43 GLSWGTNDGSLKEAFSSFGEVYEARVITDRETGRSRGFGFVEFSNEEDAKKAASSMDGQE 102
Query: 124 LDGRVIFVD--NVRPS 137
LDGR + V+ N RP+
Sbjct: 103 LDGRSVRVNFANERPA 118
>gi|198476543|ref|XP_001357388.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
gi|198137744|gb|EAL34457.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
Length = 625
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 35/81 (43%), Positives = 47/81 (58%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F T+EML F FG++ +IMD NRSKGYG++T E+A+KAL +NG
Sbjct: 371 SLHFDITEEMLRGIFEPFGKIDAIQLIMDTETNRSKGYGFITYHNAEDAKKALEQLNGFE 430
Query: 124 LDGRVIFVDNVRPSRRYNTDA 144
L GR + V NV NT +
Sbjct: 431 LAGRPMKVGNVTERLDMNTTS 451
>gi|256423338|ref|YP_003123991.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
gi|256038246|gb|ACU61790.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
Length = 92
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 5/76 (6%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L + FS++G V+ A +I+D NRS+G+G+VT + EA+KA+ +MNG L+DG+ I
Sbjct: 15 EDLNNHFSRYGVVSSANVIIDKFTNRSRGFGFVTMPNDTEAEKAIQEMNGSLIDGKTIAA 74
Query: 132 DNVR-----PSRRYNT 142
R P R YN
Sbjct: 75 SQARPREEKPGRSYNN 90
>gi|242084350|ref|XP_002442600.1| hypothetical protein SORBIDRAFT_08g022740 [Sorghum bicolor]
gi|241943293|gb|EES16438.1| hypothetical protein SORBIDRAFT_08g022740 [Sorghum bicolor]
Length = 165
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFS +G+V E+ II+D RS+G+G+VT STEE + A+
Sbjct: 8 YRCFVGGLAWATDDNSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 68 GMNGKELDGRNITVN 82
>gi|449550007|gb|EMD40972.1| hypothetical protein CERSUDRAFT_111545 [Ceriporiopsis subvermispora
B]
Length = 286
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 63 ISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGK 122
+S TT+ L D FS+FG+V + TI+ D +RS+G+G++T ST EEA + + ++NG
Sbjct: 84 FGLSIRTTERDLDDEFSRFGRVDKVTIVYDQRSDRSRGFGFITMSTTEEAGRCIKELNGV 143
Query: 123 LLDGRVIFVD 132
L+GR I VD
Sbjct: 144 ELNGRRIRVD 153
>gi|15822703|gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum]
Length = 277
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 11/111 (9%)
Query: 40 LHCIVRPSSDLIMQLVNVSFWRCI-----------SVSFSTTKEMLADAFSQFGQVTEAT 88
L V S+L + N S ++ I +S+ T + L +AFSQ+G V EA
Sbjct: 11 LKQSVSKHSNLELSASNASLFQAIRSMSSSKLFVGGLSYGTDESSLKEAFSQYGDVIEAR 70
Query: 89 IIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSRR 139
+IMD RS+G+G+++ + EEA AL M+G+ L GR I V+ RR
Sbjct: 71 VIMDRDTGRSRGFGFISFPSSEEAASALQAMDGQDLHGRRIRVNYATEKRR 121
>gi|162463657|ref|NP_001105707.1| glycine-rich protein1 [Zea mays]
gi|22293|emb|CAA43431.1| glycine-rich protein [Zea mays]
Length = 155
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STEE + +
Sbjct: 8 YRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEERMRNRIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 68 GMNGKELDGRNITVN 82
>gi|225423629|ref|XP_002274983.1| PREDICTED: glycine-rich RNA-binding protein 2 [Vitis vinifera]
gi|359473083|ref|XP_003631246.1| PREDICTED: glycine-rich RNA-binding protein 2-like [Vitis vinifera]
gi|297738010|emb|CBI27211.3| unnamed protein product [Vitis vinifera]
gi|297738011|emb|CBI27212.3| unnamed protein product [Vitis vinifera]
Length = 140
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 49/75 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++T+K L + FS+FGQ+ E ++ D R +GY ++ ++++ A AL +M+ K
Sbjct: 44 NLSYATSKSSLQEEFSKFGQIVEVDVVKDKAAKRPRGYAFIQYTSQDHAMLALENMDHKY 103
Query: 124 LDGRVIFVDNVRPSR 138
LDGRV+ V+ +P +
Sbjct: 104 LDGRVVCVELAKPGK 118
>gi|255633638|gb|ACU17178.1| unknown [Glycine max]
Length = 196
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
VS+ST ++ L +AFS++G+V +A IIMD RS+G+G++T ++ EEA A+ ++G+ L
Sbjct: 49 VSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQALDGQDL 108
Query: 125 DGRVIFVD--NVRP 136
GR I V+ N RP
Sbjct: 109 HGRPIRVNYANERP 122
>gi|347819854|ref|ZP_08873288.1| RNP-1 like RNA-binding protein [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 168
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S L AF QFG VT A ++M+ RSKG+G+V ++ EAQ A+ MNG+
Sbjct: 9 NLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAITGMNGQP 68
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ RP
Sbjct: 69 LGGRSIVVNEARP 81
>gi|146328793|ref|YP_001209360.1| RNA recognition motif-containing protein [Dichelobacter nodosus
VCS1703A]
gi|146232263|gb|ABQ13241.1| RNA recognition motif protein [Dichelobacter nodosus VCS1703A]
Length = 95
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ TT++ L +AFSQFG V A+II D RSKG+G+V E A+KA+ +N K
Sbjct: 8 NLSYRTTEDELRNAFSQFGDVQNASIIKDRDSGRSKGFGFVEMPDAEAAKKAIESLNDKD 67
Query: 124 LDGRVIFVDNVRP 136
L GR + ++ RP
Sbjct: 68 LGGRNLKINEARP 80
>gi|185133178|ref|NP_001117016.1| hyperosmotic glycine rich protein [Salmo salar]
gi|28173040|gb|AAO32675.1| hyperosmotic glycine rich protein [Salmo salar]
Length = 205
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 47/69 (68%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF TT++ LA+AFS++G +++ +IMD R +G+G+V E+A+ A+ MNG+
Sbjct: 11 GLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDAMNGQS 70
Query: 124 LDGRVIFVD 132
LDGR I V+
Sbjct: 71 LDGRTIRVN 79
>gi|388512901|gb|AFK44512.1| unknown [Medicago truncatula]
Length = 144
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S TT E L +AF +FG+V A ++ D SKG+G+V +T E+A K + M+GK
Sbjct: 57 GLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIEGMDGKF 116
Query: 124 LDGRVIFVDNVRP 136
L+G VIF + RP
Sbjct: 117 LEGWVIFAEYARP 129
>gi|261351264|gb|ACX71299.1| RNA-binding protein RZ-1 [Capsicum annuum]
Length = 202
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++S+ST+ L DAF +FG + +A +++D RS+G+G+VT + + A+
Sbjct: 7 YRCFIGNLSWSTSDRGLKDAFEKFGNLVDAKVVLDKFSGRSRGFGFVTFDDKRAMEDAIE 66
Query: 118 DMNGKLLDGRVIFVDNVRP 136
MNG LDGR I VD +P
Sbjct: 67 AMNGMDLDGRAITVDKAQP 85
>gi|425781282|gb|EKV19258.1| hypothetical protein PDIG_04180 [Penicillium digitatum PHI26]
gi|425783364|gb|EKV21218.1| hypothetical protein PDIP_08850 [Penicillium digitatum Pd1]
Length = 162
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T+ + L + F QFG++ EA ++ D RS+G+G+V +T+ EA AL MN +
Sbjct: 8 GLSWHTSDDTLREGFQQFGEIQEAIVVKDRATLRSRGFGFVRFATDAEADSALGAMNNQE 67
Query: 124 LDGRVIFVDNV-----RPSRRYNTDASLARQPAQS 153
DGRVI VD RP ++ QP S
Sbjct: 68 FDGRVIRVDKAFDRPQRPEGGFHGRGGYNSQPHSS 102
>gi|194693774|gb|ACF80971.1| unknown [Zea mays]
Length = 133
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STE+ + A+
Sbjct: 8 YRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 68 GMNGKELDGRNITVN 82
>gi|20257687|gb|AAM16009.1| glycine-rich RNA binding protein [Zea mays]
gi|20257713|gb|AAM16022.1| glycine-rich RNA binding protein [Zea mays]
Length = 149
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STE+ + A+
Sbjct: 11 YRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIE 70
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 71 GMNGKELDGRNITVN 85
>gi|20257715|gb|AAM16023.1| glycine-rich RNA binding protein [Zea mays]
gi|20257721|gb|AAM16026.1| glycine-rich RNA binding protein [Zea mays]
Length = 148
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STE+ + A+
Sbjct: 11 YRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIE 70
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 71 GMNGKELDGRNITVN 85
>gi|326527061|dbj|BAK04472.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 139
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 8/85 (9%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT + L +AFS+FGQVT+A +I D S+G+G+V +T EEA + + M+GK DG V
Sbjct: 51 TTSDGLREAFSKFGQVTDARVITDRISGYSRGFGFVKYATVEEAAEGIKGMDGKFFDGWV 110
Query: 129 IFVDNVRPSRRYNTDASLARQPAQS 153
IF + + A+QP QS
Sbjct: 111 IFAEYAKQRE--------AQQPPQS 127
>gi|116780918|gb|ABK21879.1| unknown [Picea sitchensis]
Length = 172
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L DAFS FG++ E+ II D RS+G+G+VT S E+ + A+
Sbjct: 9 YRCFVGGLAWATDDRSLQDAFSPFGEILESKIISDRETGRSRGFGFVTFSDEQSMRDAID 68
Query: 118 DMNGKLLDGRVIFVD 132
MNGK+LDGR I V+
Sbjct: 69 AMNGKVLDGRNITVN 83
>gi|119357086|ref|YP_911730.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
gi|119354435|gb|ABL65306.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
Length = 90
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 49/73 (67%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++++ +++ L DAFSQFGQV A II D RSKG+G++ S + EA++A+ MN +
Sbjct: 7 NLAYTVSEDDLRDAFSQFGQVDSANIINDKFSGRSKGFGFIEMSNDSEAREAIESMNDQD 66
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ +P
Sbjct: 67 LKGRTIKVNEAKP 79
>gi|20257695|gb|AAM16013.1| glycine-rich RNA binding protein [Zea mays]
Length = 149
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STE+ + A+
Sbjct: 12 YRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIE 71
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 72 GMNGKELDGRNITVN 86
>gi|392578419|gb|EIW71547.1| hypothetical protein TREMEDRAFT_56482 [Tremella mesenterica DSM
1558]
Length = 223
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++TT + L DAF QFGQV ++ ++ D RS+G+G+VT ST EEA+ ++ MN +
Sbjct: 10 NLSWNTTDDTLRDAFMQFGQVLDSIVMKDRETGRSRGFGFVTFSTAEEAEISIQQMNEQP 69
Query: 124 LDGRVIFVD--NVRPS 137
LDGR I V+ N +P+
Sbjct: 70 LDGRNIRVNMANAKPA 85
>gi|408398205|gb|EKJ77338.1| hypothetical protein FPSE_02416 [Fusarium pseudograminearum CS3096]
Length = 128
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++TT + L FS+FG+VT++ I+ D R++G+G+VT STEE+A A+ +N +
Sbjct: 8 NLSWNTTDDTLRQTFSEFGEVTDSIIMRDRETGRARGFGFVTFSTEEQANAAVDALNEQE 67
Query: 124 LDGRVIFVD--NVRPS 137
LDGR I V+ N RP+
Sbjct: 68 LDGRRIRVNVANARPA 83
>gi|120613408|ref|YP_973086.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
gi|120591872|gb|ABM35312.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
Length = 176
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S L AF QFG VT A ++M+ RSKG+G+V ++ EAQ A+ MNG+
Sbjct: 9 NLPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQA 68
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ RP
Sbjct: 69 LGGRSIVVNEARP 81
>gi|195621182|gb|ACG32421.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 146
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STE+ + A+
Sbjct: 8 YRCFVGXLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 68 GMNGKELDGRNITVN 82
>gi|198282085|ref|NP_001105572.1| glycine-rich RNA binding protein [Zea mays]
gi|2668742|gb|AAB88616.1| glycine-rich RNA binding protein [Zea mays]
gi|194692162|gb|ACF80165.1| unknown [Zea mays]
gi|195623052|gb|ACG33356.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 145
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STE+ + A+
Sbjct: 8 YRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 68 GMNGKELDGRNITVN 82
>gi|259486065|tpe|CBF83611.1| TPA: glycine-rich RNA-binding protein, putative (AFU_orthologue;
AFUA_3G08580) [Aspergillus nidulans FGSC A4]
Length = 128
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT ++L + FS++G + EA ++ D NRS+G+G+V ++E EA A+ MN +
Sbjct: 8 GLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAMNNQE 67
Query: 124 LDGRVIFVDNV--RPSRR 139
DGR+I VD RP+ R
Sbjct: 68 FDGRIIRVDKASERPAAR 85
>gi|195618802|gb|ACG31231.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195625478|gb|ACG34569.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 146
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STE+ + A+
Sbjct: 8 YRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 68 GMNGKELDGRNITVN 82
>gi|121606987|ref|YP_984316.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
gi|120595956|gb|ABM39395.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
Length = 152
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S E L +F QFG VT A ++M+ RSKG+G+V +++ EAQ A+ MNG+
Sbjct: 9 NLPYSVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMASDAEAQAAINGMNGQP 68
Query: 124 LDGRVIFVDNVRP 136
L GR + V+ RP
Sbjct: 69 LGGRSVVVNEARP 81
>gi|121705230|ref|XP_001270878.1| glycine-rich RNA-binding protein, putative [Aspergillus clavatus
NRRL 1]
gi|119399024|gb|EAW09452.1| glycine-rich RNA-binding protein, putative [Aspergillus clavatus
NRRL 1]
Length = 133
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT + L F QFGQV EA ++ D NRS+G+G+V S++ +A KA+ MN +
Sbjct: 8 GLAWHTTDDALRQGFEQFGQVEEAIVVKDRDTNRSRGFGFVRFSSDSDADKAMDAMNNQE 67
Query: 124 LDGRVIFVD 132
DGR I VD
Sbjct: 68 FDGRTIRVD 76
>gi|20257673|gb|AAM16002.1| glycine-rich RNA binding protein [Zea mays]
Length = 139
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STE+ + A+
Sbjct: 2 YRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIE 61
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 62 GMNGKELDGRNITVN 76
>gi|20257689|gb|AAM16010.1| glycine-rich RNA binding protein [Zea mays]
Length = 147
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STE+ + A+
Sbjct: 10 YRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIE 69
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 70 GMNGKELDGRNITVN 84
>gi|20257675|gb|AAM16003.1| glycine-rich RNA binding protein [Zea mays]
Length = 156
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STE+ + A+
Sbjct: 19 RCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEG 78
Query: 119 MNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 79 MNGKELDGRNITVN 92
>gi|20257669|gb|AAM16000.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STE+ + A+
Sbjct: 19 RCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEG 78
Query: 119 MNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 79 MNGKELDGRNITVN 92
>gi|121595278|ref|YP_987174.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|222111562|ref|YP_002553826.1| rnp-1 like RNA-binding protein [Acidovorax ebreus TPSY]
gi|120607358|gb|ABM43098.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|221731006|gb|ACM33826.1| RNP-1 like RNA-binding protein [Acidovorax ebreus TPSY]
Length = 102
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++++S E L FSQFG VT A ++M+ RSKG+G+V ++ EAQ A+ +NG+
Sbjct: 9 NLAYSVRDESLHQQFSQFGSVTSAKVMMERDTGRSKGFGFVEMGSDSEAQDAINGLNGRS 68
Query: 124 LDGRVIFVDNVRP 136
+DGR + V+ RP
Sbjct: 69 VDGRALTVNVARP 81
>gi|410924411|ref|XP_003975675.1| PREDICTED: cold-inducible RNA-binding protein-like [Takifugu
rubripes]
Length = 170
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T +E LA+AF ++G + + +I D RS+G+G+V + E+A+ A+ MNGK
Sbjct: 11 GLSFETNEESLAEAFGKYGTIEKVDVIRDKETGRSRGFGFVKYESVEDAKDAMTAMNGKS 70
Query: 124 LDGRVIFVD----NVRP 136
LDGR I VD +RP
Sbjct: 71 LDGRAIRVDEAGKGLRP 87
>gi|351725255|ref|NP_001236574.1| uncharacterized protein LOC100527220 [Glycine max]
gi|255631812|gb|ACU16273.1| unknown [Glycine max]
Length = 138
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 10/90 (11%)
Query: 57 VSFWRCIS--------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSST 108
+++ RC+S +S+ + L DAFS FG V +A +I D RS+G+G+V S
Sbjct: 27 LNYIRCMSSSKLFIGGLSYGVDDQSLKDAFSGFGDVVDAKVITDRDSGRSRGFGFVNFSN 86
Query: 109 EEEAQKALVDMNGKLLDGRVIFVD--NVRP 136
+E A AL M+GK LDGR I V N RP
Sbjct: 87 DESASSALSAMDGKDLDGRSIRVSYANDRP 116
>gi|343459003|gb|AEM37660.1| cold inducible RNA binding protein [Epinephelus bruneus]
Length = 176
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T +E LA AF ++G + + +I D RS+G+G+V ++A+ AL MNGK
Sbjct: 11 GLSFETNEESLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNSDDAKDALEGMNGKT 70
Query: 124 LDGRVIFVDNVRPSRRYN 141
LDGR I VD R N
Sbjct: 71 LDGRAIRVDEAGKGGRSN 88
>gi|336371226|gb|EGN99565.1| hypothetical protein SERLA73DRAFT_159820 [Serpula lacrymans var.
lacrymans S7.3]
Length = 127
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+STT + L +AFS++GQV ++ ++ D RS+G+G+VT S+E+EA+ A+ ++ +
Sbjct: 9 NLSWSTTDDTLREAFSEYGQVVDSIVMRDRETGRSRGFGFVTFSSEQEAEAAINSLHEQD 68
Query: 124 LDGRVIFVD--NVRP 136
LDGR I V+ N RP
Sbjct: 69 LDGRRIKVNLANARP 83
>gi|20257711|gb|AAM16021.1| glycine-rich RNA binding protein [Zea mays]
Length = 150
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STE+ + A+
Sbjct: 13 YRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIE 72
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 73 GMNGKELDGRNITVN 87
>gi|255580168|ref|XP_002530915.1| RNA binding protein, putative [Ricinus communis]
gi|223529509|gb|EEF31464.1| RNA binding protein, putative [Ricinus communis]
Length = 354
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L AFS+FG+V +A ++ D SKG+G+V + E+A+K + M+GK LDG V
Sbjct: 63 TTTEGLKQAFSKFGEVVQARVVTDRVSGYSKGFGFVRYGSLEDAEKGIEGMDGKFLDGWV 122
Query: 129 IFVDNVRP 136
IF + RP
Sbjct: 123 IFAEYARP 130
>gi|34785785|gb|AAH57481.1| Cirbp protein [Danio rerio]
Length = 121
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ TT++ L +AFS++G + + +I D +RS+G+G+VT E+A+ A+ MNGK
Sbjct: 4 GLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGKQ 63
Query: 124 LDGRVIFVD 132
+DGR+I VD
Sbjct: 64 VDGRMIRVD 72
>gi|164659141|ref|XP_001730695.1| hypothetical protein MGL_2149 [Malassezia globosa CBS 7966]
gi|159104592|gb|EDP43481.1| hypothetical protein MGL_2149 [Malassezia globosa CBS 7966]
Length = 190
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 4/87 (4%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S+STT + LA AFS +GQ+T+ ++ D RS+G+G+VT T++EA A++ +N + L
Sbjct: 9 LSWSTTDDGLAQAFSPYGQLTDYIVMKDRDSGRSRGFGFVTFMTQQEADAAIMALNEQEL 68
Query: 125 DGRVIFVD--NVRPSRRYN--TDASLA 147
DGR I V+ N RP + T ASL
Sbjct: 69 DGRRIRVNMANSRPPMVHGGMTGASLG 95
>gi|91790716|ref|YP_551668.1| RNA recognition motif-containing protein [Polaromonas sp. JS666]
gi|91699941|gb|ABE46770.1| RNA-binding region RNP-1 (RNA recognition motif) [Polaromonas sp.
JS666]
Length = 151
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S E L +F QFG VT A ++M+ RSKG+G+V ++ EAQ A+ MNG+
Sbjct: 9 NLPYSVRDEDLQQSFGQFGSVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQP 68
Query: 124 LDGRVIFVDNVRP 136
L GR + V+ RP
Sbjct: 69 LGGRSVVVNEARP 81
>gi|195626882|gb|ACG35271.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 203
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STE+ + A+
Sbjct: 66 RCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEG 125
Query: 119 MNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 126 MNGKELDGRNITVN 139
>gi|443895166|dbj|GAC72512.1| hypothetical protein PANT_7d00134 [Pseudozyma antarctica T-34]
Length = 301
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S++TT + LA AFS FGQ+T+ ++ D RS+G+G+VT +T+ EA A+ +N + L
Sbjct: 10 LSWNTTDDSLAHAFSAFGQLTDYIVMKDRETGRSRGFGFVTFATQGEADAAIAALNEQEL 69
Query: 125 DGRVIFVD--NVRPS 137
DGR I V+ N RP+
Sbjct: 70 DGRRIRVNMANSRPA 84
>gi|326319545|ref|YP_004237217.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323376381|gb|ADX48650.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 172
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S L AF QFG VT A ++M+ RSKG+G+V ++ EAQ A+ MNG+
Sbjct: 9 NLPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQA 68
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ RP
Sbjct: 69 LGGRSIVVNEARP 81
>gi|398802241|ref|ZP_10561457.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
gi|398100710|gb|EJL90943.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
Length = 148
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S E L +F QFG VT A ++M+ RSKG+G+V ++ EAQ A+ MNG+
Sbjct: 9 NLPYSVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQP 68
Query: 124 LDGRVIFVDNVRP 136
L GR + V+ RP
Sbjct: 69 LGGRSVVVNEARP 81
>gi|20257691|gb|AAM16011.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STE+ + A+
Sbjct: 18 RCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEG 77
Query: 119 MNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 78 MNGKELDGRNITVN 91
>gi|20257667|gb|AAM15999.1| glycine-rich RNA binding protein [Zea mays]
gi|20257671|gb|AAM16001.1| glycine-rich RNA binding protein [Zea mays]
gi|20257677|gb|AAM16004.1| glycine-rich RNA binding protein [Zea mays]
gi|20257685|gb|AAM16008.1| glycine-rich RNA binding protein [Zea mays]
gi|20257703|gb|AAM16017.1| glycine-rich RNA binding protein [Zea mays]
gi|20257717|gb|AAM16024.1| glycine-rich RNA binding protein [Zea mays]
gi|20257719|gb|AAM16025.1| glycine-rich RNA binding protein [Zea mays]
Length = 154
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STE+ + A+
Sbjct: 18 RCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEG 77
Query: 119 MNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 78 MNGKELDGRNITVN 91
>gi|395005503|ref|ZP_10389380.1| RRM domain-containing RNA-binding protein, partial [Acidovorax sp.
CF316]
gi|394316556|gb|EJE53277.1| RRM domain-containing RNA-binding protein, partial [Acidovorax sp.
CF316]
Length = 110
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S L AF QFG VT A ++M+ RSKG+G+V ++ EAQ A+ MNG+
Sbjct: 9 NLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDPEAQAAINGMNGQP 68
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ RP
Sbjct: 69 LGGRSIVVNEARP 81
>gi|20257683|gb|AAM16007.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT STE+ + A+
Sbjct: 18 RCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEG 77
Query: 119 MNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 78 MNGKELDGRNITVN 91
>gi|168704267|ref|ZP_02736544.1| RNA-binding region RNP-1 [Gemmata obscuriglobus UQM 2246]
Length = 137
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 48/73 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ T ML + F+ +G V A +IMD RSKG+G+V +++EAQ A+ M+G++
Sbjct: 9 NLSWGVTDAMLQEMFTPYGAVVSAQVIMDRDTGRSKGFGFVEMGSDQEAQAAISGMHGQV 68
Query: 124 LDGRVIFVDNVRP 136
++GR + V+ RP
Sbjct: 69 IEGRPLTVNEARP 81
>gi|6911142|gb|AAF31402.1| putative glycine-rich RNA binding protein 1 [Catharanthus roseus]
Length = 137
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 52 MQLVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTE 109
M +V F RC ++++TT + L++AFSQ+G+V E+ II D RS+G+G+VT E
Sbjct: 1 MASADVEF-RCFVGGLAWATTDQSLSEAFSQYGEVLESKIINDRETGRSRGFGFVTFGDE 59
Query: 110 EEAQKALVDMNGKLLDGRVIFVDNVRP 136
+ + A+ MNG+ LDGR + V+ +
Sbjct: 60 KSMKDAIEGMNGQTLDGRNVTVNEAQS 86
>gi|544423|sp|Q99070.1|GRP2_SORBI RecName: Full=Glycine-rich RNA-binding protein 2
gi|21625|emb|CAA40862.1| glycine-rich RNA-binding protein [Sorghum bicolor]
Length = 168
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T E L AF+ FGQV ++ +I D RS+G+G+VT S+E+ A+
Sbjct: 8 YRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
+MNGK LDGR I V+
Sbjct: 68 NMNGKELDGRNITVN 82
>gi|399886791|gb|AFP52931.1| RBP1 [Hordeum vulgare]
Length = 162
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC S+S++T L AFS FG++ +A II D RS+G+G+V+ S E+ Q A+
Sbjct: 9 YRCFVGSLSWNTDDRGLEAAFSSFGEILDAKIINDRETGRSRGFGFVSFSNEQAMQDAIE 68
Query: 118 DMNGKLLDGRVIFVDNVRP 136
MNGK LDGR I V+ +
Sbjct: 69 GMNGKELDGRSIVVNEAQS 87
>gi|116782406|gb|ABK22494.1| unknown [Picea sitchensis]
Length = 178
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 50/69 (72%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ TT++ L +AFS FG + EATI+MD RS+G+ ++ + EEEA+ A+ M+GK
Sbjct: 88 GLSYYTTEQSLRNAFSSFGNLVEATIVMDRVTKRSRGFAFLRYAYEEEAEAAIKGMHGKF 147
Query: 124 LDGRVIFVD 132
LDGRVIFV+
Sbjct: 148 LDGRVIFVE 156
>gi|10799202|gb|AAG23220.1| glycine-rich RNA-binding protein [Sorghum bicolor]
Length = 170
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T E L AF+ FGQV ++ +I D RS+G+G+VT S+E+ A+
Sbjct: 8 YRCFVGGLAWATNNETLEHAFANFGQVLDSKVITDRETGRSRGFGFVTFSSEQSMLDAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
+MNGK LDGR I V+
Sbjct: 68 NMNGKELDGRNITVN 82
>gi|62955567|ref|NP_001017797.1| cold inducible RNA binding protein [Danio rerio]
gi|62202782|gb|AAH93299.1| Zgc:112425 [Danio rerio]
gi|63100518|gb|AAH95030.1| Zgc:112425 [Danio rerio]
gi|182889498|gb|AAI65256.1| Zgc:112425 protein [Danio rerio]
Length = 185
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF TT++ L DAFS++G +T + + NRS+G+G+VT ++A+ AL MNGK
Sbjct: 11 GLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGMNGKS 70
Query: 124 LDGRVIFVD 132
+DGR I VD
Sbjct: 71 VDGRTIRVD 79
>gi|365091634|ref|ZP_09328989.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363415945|gb|EHL23069.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 192
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S L AF QFG VT A ++M+ RSKG+G+V ++ EAQ A+ MNG+
Sbjct: 9 NLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAISGMNGQP 68
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ RP
Sbjct: 69 LGGRSIVVNEARP 81
>gi|402217291|gb|EJT97372.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 167
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++T + L AFSQFGQV + ++ D RS+G+G+VT T +EAQ A+ +N +
Sbjct: 19 NLSWNTNDDTLRSAFSQFGQVLDCIVMKDRESGRSRGFGFVTFGTSQEAQAAIDGLNEQD 78
Query: 124 LDGRVIFVD--NVRP 136
LDGR I V+ N RP
Sbjct: 79 LDGRRIRVNLANARP 93
>gi|291514454|emb|CBK63664.1| RNA-binding proteins (RRM domain) [Alistipes shahii WAL 8301]
Length = 116
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S+ T+ E L + F QFG+V A +I D RS+G+G+V EEE QKA+ +NG
Sbjct: 8 LSWGTSSEGLGNLFMQFGEVASANVITDRETGRSRGFGFVEMPNEEEGQKAIDQLNGTSF 67
Query: 125 DGRVIFVDNVRP 136
+G+ I V+ RP
Sbjct: 68 EGQTITVNVARP 79
>gi|327301915|ref|XP_003235650.1| glycine-rich RNA-binding protein [Trichophyton rubrum CBS 118892]
gi|326463002|gb|EGD88455.1| glycine-rich RNA-binding protein [Trichophyton rubrum CBS 118892]
Length = 149
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT + L + FS+FG + EA ++ D NRS+G+G+V S++ EA AL MN +
Sbjct: 10 GLAWHTTDDTLREGFSKFGTIEEAIVVKDRDTNRSRGFGFVRFSSDSEADAALNAMNNQE 69
Query: 124 LDGRVIFVD 132
DGRVI VD
Sbjct: 70 FDGRVIRVD 78
>gi|145233965|ref|XP_001400355.1| glycine-rich RNA-binding protein 2 [Aspergillus niger CBS 513.88]
gi|134057294|emb|CAK37908.1| unnamed protein product [Aspergillus niger]
gi|350635078|gb|EHA23440.1| hypothetical protein ASPNIDRAFT_197860 [Aspergillus niger ATCC
1015]
Length = 116
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT E L + FSQ+G + EA ++ D +RS+G+G+V +++ EA A+ MN +
Sbjct: 8 GLAWHTTDETLREGFSQYGTIEEAIVVKDHDTHRSRGFGFVRFASDVEADAAMNAMNNQE 67
Query: 124 LDGRVIFVDNVRPSR 138
DGRVI VD SR
Sbjct: 68 FDGRVIRVDKASESR 82
>gi|67525063|ref|XP_660593.1| hypothetical protein AN2989.2 [Aspergillus nidulans FGSC A4]
gi|40744384|gb|EAA63560.1| hypothetical protein AN2989.2 [Aspergillus nidulans FGSC A4]
Length = 118
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT ++L + FS++G + EA ++ D NRS+G+G+V ++E EA A+ MN +
Sbjct: 8 GLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAMNNQE 67
Query: 124 LDGRVIFVDNV--RPSRR 139
DGR+I VD RP+ R
Sbjct: 68 FDGRIIRVDKASERPAAR 85
>gi|12659074|gb|AAK01176.1| RNA-binding protein [Triticum aestivum]
Length = 183
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 54 LVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEE 111
+ + +RC S+S++TT L DAF +FG+VTE +++D RS+G+G+VT ++
Sbjct: 1 MSDADDYRCFVGSLSWNTTDVDLKDAFGKFGRVTETKVVLDKFSGRSRGFGFVTFDDKKA 60
Query: 112 AQKALVDMNGKLLDGRVIFVDNVRP 136
++A+ MNG LDGR I V+ +P
Sbjct: 61 MEEAVEAMNGIDLDGRNITVERAQP 85
>gi|121604834|ref|YP_982163.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
gi|120593803|gb|ABM37242.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
Length = 132
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ ++ E L +F QFG VT A ++M+ RSKG+G+V ++ EAQ A+ MNG+
Sbjct: 9 NLPYTVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAGMNGQS 68
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ RP
Sbjct: 69 LGGRSITVNEARP 81
>gi|427794973|gb|JAA62938.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 509
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 47 SSDLIMQLVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYV 104
+S+ +Q NV R S+ F+ T+EML F FG++ + +I D+ NRSKGYG++
Sbjct: 239 TSNSTLQRGNVGPMRLYVGSLHFNITEEMLKGIFEPFGKIDKIELIKDMETNRSKGYGFI 298
Query: 105 TSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134
T E+A+KAL +NG L GR + V +V
Sbjct: 299 TFHDSEDAKKALEQLNGFELAGRPMKVGHV 328
>gi|224059524|ref|XP_002299889.1| predicted protein [Populus trichocarpa]
gi|222847147|gb|EEE84694.1| predicted protein [Populus trichocarpa]
Length = 88
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 47/71 (66%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT L FS FG V+EA ++++ R KG+G+VT +E +A KAL MNG++++GR+
Sbjct: 18 TTNHELKRLFSPFGAVSEARLVVESKTLRPKGFGFVTFESEADAHKALKAMNGRIVNGRL 77
Query: 129 IFVDNVRPSRR 139
IFV+ + + R
Sbjct: 78 IFVEVAKDTER 88
>gi|427792527|gb|JAA61715.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 497
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 47 SSDLIMQLVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYV 104
+S+ +Q NV R S+ F+ T+EML F FG++ + +I D+ NRSKGYG++
Sbjct: 227 TSNSTLQRGNVGPMRLYVGSLHFNITEEMLKGIFEPFGKIDKIELIKDMETNRSKGYGFI 286
Query: 105 TSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134
T E+A+KAL +NG L GR + V +V
Sbjct: 287 TFHDSEDAKKALEQLNGFELAGRPMKVGHV 316
>gi|241766569|ref|ZP_04764426.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
gi|241363173|gb|EER58764.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
Length = 116
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S L AF QFG VT A ++M+ RSKG+G+V ++ EAQ A+ MNG+
Sbjct: 9 NLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQP 68
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ RP
Sbjct: 69 LGGRSIVVNEARP 81
>gi|118488717|gb|ABK96169.1| unknown [Populus trichocarpa]
Length = 241
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 10/90 (11%)
Query: 61 RCIS--------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEA 112
RC+S +SF T L +AF ++G V EA IIMD RS+G+G+VT ++ EEA
Sbjct: 35 RCMSSSKIFIGGISFQTDDNGLKEAFDKYGNVVEARIIMDRDTGRSRGFGFVTYTSSEEA 94
Query: 113 QKALVDMNGKLLDGRVIFVDNV--RPSRRY 140
A+ M+G+ L GR + V+ RP R +
Sbjct: 95 SSAIQAMDGQDLHGRRVRVNYATERPQRTF 124
>gi|115488680|ref|NP_001066827.1| Os12g0502200 [Oryza sativa Japonica Group]
gi|77555842|gb|ABA98638.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113649334|dbj|BAF29846.1| Os12g0502200 [Oryza sativa Japonica Group]
gi|125579440|gb|EAZ20586.1| hypothetical protein OsJ_36195 [Oryza sativa Japonica Group]
gi|215694288|dbj|BAG89281.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215708787|dbj|BAG94056.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 258
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 8/80 (10%)
Query: 61 RCIS--------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEA 112
RC+S +S+ T ++ L D F+ +GQV EA II D RS+G+G++T ++ EEA
Sbjct: 26 RCMSSSKLFVGGLSYGTDEQSLRDTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEA 85
Query: 113 QKALVDMNGKLLDGRVIFVD 132
A+ ++GK LDGR I V+
Sbjct: 86 SAAITALDGKDLDGRNIRVN 105
>gi|45544646|ref|NP_956311.1| cold inducible RNA binding protein isoform 2 [Danio rerio]
gi|28856196|gb|AAH48027.1| Cold inducible RNA binding protein [Danio rerio]
gi|182891172|gb|AAI64022.1| Cirbp protein [Danio rerio]
Length = 184
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 48/71 (67%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ TT++ L +AFS++G + + +I D +RS+G+G+VT E+A+ A+ MNGK
Sbjct: 11 GLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGKQ 70
Query: 124 LDGRVIFVDNV 134
+DGR+I VD
Sbjct: 71 VDGRMIRVDEA 81
>gi|388511713|gb|AFK43918.1| unknown [Lotus japonicus]
Length = 141
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 20/129 (15%)
Query: 29 SKPYQVVNYFSLHCIVRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEAT 88
S P+ + + + PS++L + +N TT E L + F++FG+V A
Sbjct: 25 SSPFTLTGPPTTRQMGEPSTNLFVSGLNKR----------TTTEKLREEFAKFGEVVHAR 74
Query: 89 IIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSRRYNTDASLAR 148
++ D SKG+G+V +T EEA K + M+GK LDG VIF + + S
Sbjct: 75 VVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSS----------P 124
Query: 149 QPAQSPEEN 157
P Q P N
Sbjct: 125 APGQQPANN 133
>gi|328767903|gb|EGF77951.1| hypothetical protein BATDEDRAFT_27077 [Batrachochytrium
dendrobatidis JAM81]
Length = 106
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ T LADAFSQFG+V ++ ++ D RS+G+G+VT S+ E A A+ MNG+
Sbjct: 17 NLSWGTDNNSLADAFSQFGEVVDSIVLKDRETGRSRGFGFVTFSSPESASAAVDAMNGQD 76
Query: 124 LDGRVIFVD--NVRPS 137
L+GR I V+ N RP+
Sbjct: 77 LNGRNIRVNLANERPA 92
>gi|221221302|gb|ACM09312.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 131
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF TT++ LA+AFS++G + + +IMD R +G+G+V E+A+ A+ MNG+
Sbjct: 11 GLSFDTTEQSLAEAFSKYGNIAKCDVIMDRETGRPRGFGFVKYDNAEDAKDAMEGMNGQS 70
Query: 124 LDGRVIFVD 132
LDGR I V+
Sbjct: 71 LDGRTIRVN 79
>gi|388493798|gb|AFK34965.1| unknown [Medicago truncatula]
Length = 185
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L +AF +FG+V + ++ D SKG+GYV +T E+A K + M+GK L+G +
Sbjct: 55 TTSETLREAFKKFGEVKQVRVVADRVSGYSKGFGYVRYATSEDAAKGIQGMDGKFLEGWI 114
Query: 129 IFVDNVRPSRRYNTDASLAR-QPAQS-PEEN 157
+F + RP R N AS +P+ S P+E
Sbjct: 115 VFAEYARP--RINAIASQTHTEPSNSKPDEK 143
>gi|187373099|gb|ACD03270.1| glycine-rich RNA-binding protein [Nicotiana tabacum]
Length = 157
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++TT + L DAFSQ+G++ ++ II D RS+G+G+VT E+ + A+
Sbjct: 6 YRCFVGGLAWATTDQTLGDAFSQYGEIVDSKIINDRETGRSRGFGFVTFKDEQAMRDAIE 65
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 66 GMNGQDLDGRNITVN 80
>gi|168034678|ref|XP_001769839.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678948|gb|EDQ65401.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 133
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++++T + L DAFS FG VTE II+D RS+G+G+V ++ EEA+ AL +M+G+
Sbjct: 51 GLAWATDENTLRDAFSSFGTVTEVKIILDRDTGRSRGFGFVNFTSPEEAEVALQEMDGRE 110
Query: 124 LDGRVIFVD 132
L GR I VD
Sbjct: 111 LAGRQIRVD 119
>gi|407941455|ref|YP_006857096.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
gi|407899249|gb|AFU48458.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
Length = 188
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S L AF QFG VT A ++M+ RSKG+G+V ++ EAQ A+ MNG+
Sbjct: 9 NLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQP 68
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ RP
Sbjct: 69 LGGRSIVVNEARP 81
>gi|6911144|gb|AAF31403.1|AF200322_1 putative glycine-rich RNA binding protein 3 [Catharanthus roseus]
Length = 164
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++TT + L++AFSQ+G++ E+ II D RS+G+G+VT E+ + A+
Sbjct: 8 YRCFVGGLAWATTDQSLSEAFSQYGEILESKIINDRETGRSRGFGFVTFKDEQSMRDAIE 67
Query: 118 DMNGKLLDGRVIFVDNVRP 136
MNG+ LDGR I V+ +
Sbjct: 68 GMNGQTLDGRNITVNEAQS 86
>gi|326474784|gb|EGD98793.1| glycine-rich RNA-binding protein [Trichophyton tonsurans CBS
112818]
Length = 149
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT + L + FS+FG + EA ++ D NRS+G+G+V S++ EA AL MN +
Sbjct: 10 GLAWHTTDDTLREGFSKFGTIEEAIVVKDRDTNRSRGFGFVRFSSDSEADAALNAMNNQE 69
Query: 124 LDGRVIFVD 132
DGRVI VD
Sbjct: 70 FDGRVIRVD 78
>gi|365153971|ref|ZP_09350405.1| hypothetical protein HMPREF1019_01088 [Campylobacter sp. 10_1_50]
gi|158605004|gb|EAT99377.3| 31 kDa ribonucleoprotein, (RNA-binding proteinRNP-T) (RNA-binding
protein 1/2/3) (AtRBP33) (RNA-binding proteincp31)
[Campylobacter concisus 13826]
gi|363650683|gb|EHL89770.1| hypothetical protein HMPREF1019_01088 [Campylobacter sp. 10_1_50]
Length = 81
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ TT+ L +AF+QFG+V A I+ D +RSKG+G+V E QKA+ +N K
Sbjct: 7 NLSYRTTEAELKEAFAQFGEVRRAKIVKDRETDRSKGFGFVEMDDANEGQKAIDALNEKE 66
Query: 124 LDGRVIFVDNVRP 136
L GR + V+ RP
Sbjct: 67 LGGRTLRVNEARP 79
>gi|357137588|ref|XP_003570382.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 305
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++ T EML DAF Q G V A ++ D RS+GYG+V ST+EE +A+ +NG
Sbjct: 230 NLSWTVTPEMLTDAFQQCGDVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTE 289
Query: 124 LDGRVIFVDNVRPSRRY 140
++GR I V N+ +RY
Sbjct: 290 IEGREIRV-NLALGKRY 305
>gi|209734900|gb|ACI68319.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|303657347|gb|ADM15872.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 114
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 47/69 (68%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF TT++ LA+AFS++G +++ +IMD R +G+G+V E+A+ A+ MNG+
Sbjct: 11 GLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDAMNGQS 70
Query: 124 LDGRVIFVD 132
LDGR I V+
Sbjct: 71 LDGRTIRVN 79
>gi|213513270|ref|NP_001133190.1| hyperosmotic glycine rich protein [Salmo salar]
gi|197632401|gb|ACH70924.1| hyperosmotic glycine rich protein [Salmo salar]
Length = 126
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 47/69 (68%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF TT++ LA+AFS++G +++ +IMD R +G+G+V E+A+ A+ MNG+
Sbjct: 11 GLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDAMNGQS 70
Query: 124 LDGRVIFVD 132
LDGR I V+
Sbjct: 71 LDGRTIRVN 79
>gi|356517068|ref|XP_003527212.1| PREDICTED: uncharacterized protein LOC100777821 [Glycine max]
Length = 182
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 52 MQLVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTE 109
M V F RC ++++T + L AFSQFG++ E+ +I D RS+G+G+VT +TE
Sbjct: 1 MASAEVEF-RCFVGGLAWATDHDALEKAFSQFGEIVESKVINDRETGRSRGFGFVTFATE 59
Query: 110 EEAQKALVDMNGKLLDGRVIFVD 132
+ + A+ MNG+ LDGR I V+
Sbjct: 60 QAMRDAIEGMNGQNLDGRNITVN 82
>gi|90265701|dbj|BAE91897.1| glycine-rich RNA-binding protein [Lolium perenne]
Length = 107
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T + L AFSQFG++T+ II D RS+G+G+VT S+ E + A+
Sbjct: 5 YRCFVGGLAWATNDQSLEQAFSQFGEITDCKIINDRETGRSRGFGFVTFSSSESMKNAIE 64
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 65 GMNGQDLDGRNITVN 79
>gi|297814870|ref|XP_002875318.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321156|gb|EFH51577.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 247
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC +++ST+ L DAF ++G + EA +++D RS+G+G++T ++ +A+
Sbjct: 7 YRCFIGGLAWSTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIA 66
Query: 118 DMNGKLLDGRVIFVDNVRP-----SRRYNTDASLAR 148
MNG LDGR I VD +P R ++ D S R
Sbjct: 67 AMNGMDLDGRTITVDKAQPHQGGSGRDHDGDRSRDR 102
>gi|213510736|ref|NP_001133148.1| cold inducible RNA binding protein [Salmo salar]
gi|197632151|gb|ACH70799.1| hyperosmotic glycine rich protein-like [Salmo salar]
gi|221219968|gb|ACM08645.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|221221054|gb|ACM09188.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 154
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF TT++ LA+AFS++G + + +IMD R +G+G+V E+A+ A+ MNG+
Sbjct: 11 GLSFDTTEQSLAEAFSKYGNIAKCDVIMDRETGRPRGFGFVKYDNAEDAKDAMEGMNGQS 70
Query: 124 LDGRVIFV 131
LDGR I V
Sbjct: 71 LDGRTIRV 78
>gi|2226370|gb|AAC50020.1| RNA-binding protein [Nicotiana glutinosa]
Length = 156
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++TT + L DAFSQ+G++ ++ II D RS+G+G+VT E+ + A+
Sbjct: 6 YRCFVGGLAWATTDQTLGDAFSQYGEILDSKIINDRETGRSRGFGFVTFKDEQAMRDAIE 65
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 66 GMNGQDLDGRNITVN 80
>gi|351731832|ref|ZP_08949523.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 177
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S L AF QFG VT A ++M+ RSKG+G+V + EAQ A+ MNG+
Sbjct: 9 NLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGNDAEAQAAINGMNGQP 68
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ RP
Sbjct: 69 LGGRSIVVNEARP 81
>gi|299531903|ref|ZP_07045303.1| RNA-binding protein RNP-3 [Comamonas testosteroni S44]
gi|298720078|gb|EFI61035.1| RNA-binding protein RNP-3 [Comamonas testosteroni S44]
Length = 162
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L AFSQFG V A ++M+ RSKG+G+V ++E EAQ A+ MNG+ L GR + V+
Sbjct: 19 LEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQGMNGQPLGGRSLVVNE 78
Query: 134 VRP 136
RP
Sbjct: 79 ARP 81
>gi|264680852|ref|YP_003280762.1| RNA-binding protein RNP-3 [Comamonas testosteroni CNB-2]
gi|262211368|gb|ACY35466.1| RNA-binding protein RNP-3 [Comamonas testosteroni CNB-2]
Length = 164
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L AFSQFG V A ++M+ RSKG+G+V ++E EAQ A+ MNG+ L GR + V+
Sbjct: 19 LEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQGMNGQPLGGRSLVVNE 78
Query: 134 VRP 136
RP
Sbjct: 79 ARP 81
>gi|125548231|gb|EAY94053.1| hypothetical protein OsI_15830 [Oryza sativa Indica Group]
Length = 113
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 40/54 (74%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGK 122
T++ LA+AFSQ+GQV EATI+ D NR KG+G+V ++EE A KA +MNGK
Sbjct: 48 ATEDSLAEAFSQYGQVLEATIVTDKMTNRPKGFGFVKFASEEAANKAKEEMNGK 101
>gi|333917516|ref|YP_004491248.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
gi|333747716|gb|AEF92893.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
Length = 179
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L AFSQFG VT A ++M+ RSKG+G+V ++ EAQ A+ MNG+ L GR + V+
Sbjct: 19 LEQAFSQFGAVTSARVMMERDTGRSKGFGFVEMGSDAEAQAAVQGMNGQPLGGRSLVVNE 78
Query: 134 VRP 136
RP
Sbjct: 79 ARP 81
>gi|221220658|gb|ACM08990.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|304376965|gb|ACI70202.2| Cold-inducible RNA-binding protein [Salmo salar]
Length = 161
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 46/68 (67%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF TT++ LA+AFS++G +++ +IMD R +G+G+V E+A+ A+ MNG+
Sbjct: 11 GLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDAMNGQS 70
Query: 124 LDGRVIFV 131
LDGR I V
Sbjct: 71 LDGRTIRV 78
>gi|198285593|gb|ACH85335.1| hyperosmotic glycine rich protein-like [Salmo salar]
gi|221219546|gb|ACM08434.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 160
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 46/68 (67%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF TT++ LA+AFS++G +++ +IMD R +G+G+V E+A+ A+ MNG+
Sbjct: 11 GLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDAMNGQS 70
Query: 124 LDGRVIFV 131
LDGR I V
Sbjct: 71 LDGRTIRV 78
>gi|160901478|ref|YP_001567060.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|160367062|gb|ABX38675.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
Length = 176
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L AFSQFG VT A ++M+ RSKG+G+V ++ EAQ A+ MNG+ L GR + V+
Sbjct: 19 LEQAFSQFGAVTSARVMMERDTGRSKGFGFVEMGSDAEAQAAVQGMNGQPLGGRSLVVNE 78
Query: 134 VRP 136
RP
Sbjct: 79 ARP 81
>gi|168034546|ref|XP_001769773.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678882|gb|EDQ65335.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 134
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++++T + L DAFS FG VTE II+D RS+G+G+V ++ EEA+ AL +M+G+
Sbjct: 52 GLAWATDENTLRDAFSSFGTVTEVKIILDRDTGRSRGFGFVNFTSPEEAEVALQEMDGRE 111
Query: 124 LDGRVIFVD 132
L GR I VD
Sbjct: 112 LAGRQIRVD 120
>gi|21553972|gb|AAM63053.1| glycine-rich RNA binding protein, putative [Arabidopsis thaliana]
Length = 136
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 46/68 (67%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S+ T L AF+ FG+VTEAT+I D RS+G+G+V+ S E+ A A+ +M+GK L
Sbjct: 42 LSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKEL 101
Query: 125 DGRVIFVD 132
+GR I V+
Sbjct: 102 NGRQIRVN 109
>gi|1395193|dbj|BAA12064.1| RNA-binding protein RZ-1 [Nicotiana sylvestris]
gi|1435062|dbj|BAA06012.1| RNA binding protein RZ-1 [Nicotiana sylvestris]
Length = 209
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++S+ST+ L DAF +FG + +A +++D RS+G+G+VT + + A+
Sbjct: 6 YRCFIGNLSWSTSDRGLKDAFEKFGNLVDAKVVLDKFSGRSRGFGFVTFDEKRAMEDAIE 65
Query: 118 DMNGKLLDGRVIFVDNVRPSR 138
MNG LDGR I VD +P +
Sbjct: 66 AMNGVDLDGRDITVDKAQPDK 86
>gi|4704605|gb|AAD28176.1|AF109917_1 glycine-rich RNA-binding protein [Picea glauca]
Length = 155
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 52 MQLVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTE 109
M +V F RC +++ST L +AFS +G+V E+ II D RS+G+G+VT + E
Sbjct: 1 MASADVEF-RCFVGGLAWSTDDRSLQEAFSPYGEVVESKIISDRETGRSRGFGFVTFNDE 59
Query: 110 EEAQKALVDMNGKLLDGRVIFVD 132
+ + A+ MNGK+LDGR I V+
Sbjct: 60 QSMRDAIDAMNGKMLDGRSITVN 82
>gi|418528344|ref|ZP_13094294.1| RNA-binding protein RNP-3 [Comamonas testosteroni ATCC 11996]
gi|371454720|gb|EHN67722.1| RNA-binding protein RNP-3 [Comamonas testosteroni ATCC 11996]
Length = 163
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L AFSQFG V A ++M+ RSKG+G+V ++E EAQ A+ MNG+ L GR + V+
Sbjct: 19 LEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQGMNGQPLGGRSLVVNE 78
Query: 134 VRP 136
RP
Sbjct: 79 ARP 81
>gi|387913830|gb|AFK10524.1| cold inducible RNA binding protein isoform 3 [Callorhinchus milii]
gi|392873312|gb|AFM85488.1| cold inducible RNA binding protein isoform 3 [Callorhinchus milii]
gi|392873324|gb|AFM85494.1| cold inducible RNA binding protein isoform 3 [Callorhinchus milii]
gi|392873420|gb|AFM85542.1| cold inducible RNA binding protein isoform 3 [Callorhinchus milii]
gi|392873526|gb|AFM85595.1| cold inducible RNA binding protein isoform 3 [Callorhinchus milii]
gi|392873598|gb|AFM85631.1| cold inducible RNA binding protein isoform 3 [Callorhinchus milii]
gi|392877296|gb|AFM87480.1| cold inducible RNA binding protein isoform 3 [Callorhinchus milii]
Length = 136
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L + FS++GQV+E II D S+G+G+VT + ++AQ AL MNG+
Sbjct: 11 GLNFNTEEQSLEEVFSEYGQVSEVRIIRDRDTGTSRGFGFVTFESPDDAQDALTSMNGRS 70
Query: 124 LDGRVIFVD 132
L+GR I VD
Sbjct: 71 LEGRQIRVD 79
>gi|15229525|ref|NP_189025.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
gi|30687226|ref|NP_850629.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
gi|9294652|dbj|BAB03001.1| glycine-rich RNA binding protein-like [Arabidopsis thaliana]
gi|17979516|gb|AAL50093.1| AT3g23830/F14O13_2 [Arabidopsis thaliana]
gi|20453303|gb|AAM19890.1| AT3g23830/F14O13_2 [Arabidopsis thaliana]
gi|332643298|gb|AEE76819.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
gi|332643299|gb|AEE76820.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
Length = 136
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 46/68 (67%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S+ T L AF+ FG+VTEAT+I D RS+G+G+V+ S E+ A A+ +M+GK L
Sbjct: 42 LSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKEL 101
Query: 125 DGRVIFVD 132
+GR I V+
Sbjct: 102 NGRQIRVN 109
>gi|358367775|dbj|GAA84393.1| glycine-rich RNA-binding protein [Aspergillus kawachii IFO 4308]
Length = 117
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT + L + FSQ+G + EA ++ D +RS+G+G+V +++ EA A+ MN +
Sbjct: 8 GLAWHTTDDTLREGFSQYGTIEEAIVVKDHDTHRSRGFGFVRFASDAEADAAMNAMNNQE 67
Query: 124 LDGRVIFVDNVRPSR 138
DGRVI VD SR
Sbjct: 68 FDGRVIRVDKASESR 82
>gi|319762031|ref|YP_004125968.1| rnp-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|330826150|ref|YP_004389453.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans K601]
gi|317116592|gb|ADU99080.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|329311522|gb|AEB85937.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans K601]
Length = 102
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++++S E L FSQFG VT A ++M+ RSKG+G+V ++ EAQ+A+ ++GK
Sbjct: 9 NLAYSVRDESLVQQFSQFGAVTSAKVMMERDTGRSKGFGFVEMASGAEAQEAINGLHGKS 68
Query: 124 LDGRVIFVDNVRP 136
+DGR + V+ RP
Sbjct: 69 VDGRALTVNVARP 81
>gi|353241625|emb|CCA73428.1| related to NSR1-nuclear localization sequence binding protein
[Piriformospora indica DSM 11827]
Length = 657
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S++ E L F G+V A++ MD RSKG+GYV+ ST E A+KA+ +MNGK +
Sbjct: 398 LSWNVDDEWLKSEFEACGEVVRASVQMDRQTGRSKGFGYVSFSTPEAAEKAIAEMNGKEI 457
Query: 125 DGRVIFVDNVRP 136
DGR + V+ P
Sbjct: 458 DGRAVNVNAATP 469
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+VSF+ ++ML + F + G + + D + KG+GYV ++ E A+ A +NGK
Sbjct: 496 NVSFNANEDMLWETFGEHGDIVSVRLPTDRETGQMKGFGYVEFTSVENAKSAFNALNGKD 555
Query: 124 LDGRVIFVDNVRP 136
+ GR I +D +P
Sbjct: 556 IAGRNIRLDFSQP 568
>gi|82623423|gb|ABB87126.1| putative glycine-rich RNA binding protein-like [Solanum tuberosum]
Length = 178
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++TT L++AFSQ+G+V E+ II D RS+G+G+VT E+ + A+
Sbjct: 6 YRCFVGGLAWATTDNTLSEAFSQYGEVVESKIINDRETGRSRGFGFVTFKDEQAMRDAIE 65
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 66 GMNGQDLDGRNITVN 80
>gi|59802525|gb|AAX07506.1| unknown [Gemmata sp. Wa1-1]
Length = 163
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ + T E L F +G V A +IMD RSKG+G+V ++++EAQ A+ MNG++
Sbjct: 70 NLGYGVTDEQLRGMFGPYGSVQTAQVIMDRDTGRSKGFGFVEMNSDQEAQAAIAGMNGQM 129
Query: 124 LDGRVIFVDNVRP 136
+GR + V+ +P
Sbjct: 130 SEGRALTVNEAKP 142
>gi|239818248|ref|YP_002947158.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
gi|239804825|gb|ACS21892.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
Length = 181
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S L AF QFG VT A ++M+ RSKG+G+V ++ EAQ A+ MNG+
Sbjct: 9 NLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQP 68
Query: 124 LDGRVIFVDNVRP 136
L GR + V+ RP
Sbjct: 69 LGGRSVVVNEARP 81
>gi|125536731|gb|EAY83219.1| hypothetical protein OsI_38428 [Oryza sativa Indica Group]
Length = 257
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 8/80 (10%)
Query: 61 RCIS--------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEA 112
RC+S +S+ T ++ L D F+ +GQV EA II D RS+G+G++T ++ EEA
Sbjct: 26 RCMSSSKLFVGGLSYGTDEQSLRDTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEA 85
Query: 113 QKALVDMNGKLLDGRVIFVD 132
A+ ++GK LDGR I V+
Sbjct: 86 SAAITALDGKDLDGRNIRVN 105
>gi|406911424|gb|EKD51218.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 125
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 81 FGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSRRY 140
FG+V A +I D RSKG+G+V + +EEAQKA+ D+N K +DGR I V+ RP +
Sbjct: 26 FGEVVSAQVIQDKFNGRSKGFGFVEMANDEEAQKAIDDLNNKEIDGRKIIVNEARPMEKR 85
Query: 141 NTDASLARQP 150
+ D R+P
Sbjct: 86 DGD----RKP 91
>gi|189499100|ref|YP_001958570.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
gi|189494541|gb|ACE03089.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
Length = 90
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S ++E L+DAF+QFGQV A IIMD RSKG+G+V ++EAQ A+ ++
Sbjct: 7 NLPYSLSEEELSDAFAQFGQVDRANIIMDKETGRSKGFGFVEMPNDDEAQNAIDSLHDSD 66
Query: 124 LDGRVIFVD 132
L+GR I V+
Sbjct: 67 LNGRSIKVN 75
>gi|353235522|emb|CCA67534.1| related to glycine-rich RNA-binding protein [Piriformospora indica
DSM 11827]
Length = 236
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++TT + L +AF Q+G V ++ ++ D RS+G+G+VT S+EEEA A+ +N
Sbjct: 9 NLSWNTTDDTLREAFRQYGNVVDSIVMRDRETGRSRGFGFVTYSSEEEASNAISGLNETS 68
Query: 124 LDGRVIFVD--NVRP 136
LDGR I V+ N RP
Sbjct: 69 LDGRQIKVNLANARP 83
>gi|242045928|ref|XP_002460835.1| hypothetical protein SORBIDRAFT_02g035890 [Sorghum bicolor]
gi|241924212|gb|EER97356.1| hypothetical protein SORBIDRAFT_02g035890 [Sorghum bicolor]
Length = 131
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT L +AFS+FGQV EA +I D S+G+G+V +T +EA +A+ M+GK LDG V
Sbjct: 47 TTSNGLKEAFSKFGQVIEARVITDRISGYSRGFGFVKYATVQEAGEAIKGMDGKFLDGWV 106
Query: 129 IFVDNVR 135
IF + +
Sbjct: 107 IFAEYAK 113
>gi|294464377|gb|ADE77701.1| unknown [Picea sitchensis]
Length = 299
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 49/75 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ +E+L + FS+ G + +A I+ D RS+G+G++T ST+ EA+ A+ +NGK
Sbjct: 222 NLSWDVNEEILNEVFSEHGNLLDAKIVFDRETGRSRGFGFITFSTQSEAEAAVASLNGKE 281
Query: 124 LDGRVIFVDNVRPSR 138
L+GR + VD SR
Sbjct: 282 LEGRAMRVDLALSSR 296
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ FS LA + G V +I D RS+G+ + T S+ E+A + +++G
Sbjct: 117 NLPFSCDSAELAGIIQEHGSVEMVEVIYDQNTGRSRGFAFATMSSVEDANALVENLDGSQ 176
Query: 124 LDGRVIFVD 132
GR + V+
Sbjct: 177 YGGRTLRVN 185
>gi|118788821|ref|XP_317010.3| AGAP008433-PA [Anopheles gambiae str. PEST]
gi|116122929|gb|EAA12873.4| AGAP008433-PA [Anopheles gambiae str. PEST]
Length = 526
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 275 SLHFNITEDMLNGIFEPFGKIDNIQLIMDADTGRSKGYGFITFHNADDAKKALEQLNGFE 334
Query: 124 LDGRVIFVDNVRPSRRYNTDASL 146
L GR + V NV T ASL
Sbjct: 335 LAGRPMKVGNVTERLDVTTHASL 357
>gi|162455692|ref|YP_001618059.1| RNA recognition motif-containing protein [Sorangium cellulosum So
ce56]
gi|161166274|emb|CAN97579.1| RNA-binding region RNP-1 (RNA recognition motif) [Sorangium
cellulosum So ce56]
Length = 139
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ FS TK + AF+Q G+VT+ I+ D +S+G+G+VT T E+AQ+A+ +MNG +
Sbjct: 9 NLPFSATKASVQAAFAQSGEVTDVHIVTDRESGQSRGFGFVTMGTPEQAQQAIENMNGAM 68
Query: 124 LDGRVIFVD 132
+DGR + V+
Sbjct: 69 MDGRPLRVN 77
>gi|384099683|ref|ZP_10000766.1| RNP-1 like RNA-binding protein [Imtechella halotolerans K1]
gi|383832219|gb|EID71694.1| RNP-1 like RNA-binding protein [Imtechella halotolerans K1]
Length = 92
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF T++E L D F+ FG+V+ +I+D NRS+G+ +V E A A+ +N +
Sbjct: 7 NLSFQTSEEQLLDVFTPFGEVSSVKVIVDGYSNRSRGFAFVEMPVSEHALTAIERLNESM 66
Query: 124 LDGRVIFVDNVRPSR 138
LD RVI V+ +P R
Sbjct: 67 LDSRVIVVNEAKPKR 81
>gi|395330687|gb|EJF63070.1| RNA-binding domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 272
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 63 ISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGK 122
+S TT+ L D FS+FG+V + I+ D +RS+G+G++T ST EEA + + ++NG
Sbjct: 80 FGLSIRTTERDLDDEFSRFGRVEKVVIVYDQRSDRSRGFGFITMSTTEEATRCIKELNGV 139
Query: 123 LLDGRVIFVD 132
L+GR I VD
Sbjct: 140 ELNGRRIRVD 149
>gi|300121030|emb|CBK21412.2| unnamed protein product [Blastocystis hominis]
Length = 296
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 42/68 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+S++TT EML DAFSQ G++ I+ D RS+G G V ST EE A+ MNG
Sbjct: 105 SLSWNTTDEMLRDAFSQCGKIEHYKILTDRQTGRSRGMGIVKFSTREEMNNAISTMNGST 164
Query: 124 LDGRVIFV 131
LDGR I V
Sbjct: 165 LDGRQIAV 172
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 12/66 (18%)
Query: 89 IIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV-----------DNVRPS 137
I+ D R +G+G+V+ STE+ KA+ + NG L++GR I V +NVR +
Sbjct: 34 IVYDRNTGRPRGFGFVSFSTEDGLNKAM-EQNGSLINGREIRVEVAKGSLGKNSENVRQN 92
Query: 138 RRYNTD 143
R YN +
Sbjct: 93 RNYNDE 98
>gi|356558254|ref|XP_003547422.1| PREDICTED: cold-inducible RNA-binding protein-like [Glycine max]
Length = 86
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT+E L FS FG VT+A + +D R KG+G+V+ +E EA+KAL MNG+++ GR+
Sbjct: 18 TTQEQLKKLFSPFGLVTQADLALDPITKRPKGFGFVSFKSEIEAEKALRAMNGRIVSGRL 77
Query: 129 IFVD 132
I V+
Sbjct: 78 ILVE 81
>gi|357144628|ref|XP_003573359.1| PREDICTED: nucleolin-like [Brachypodium distachyon]
Length = 153
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT + L +AF++FG+V A ++ D SKG+G+V ++ E+A K + M+GK LDG V
Sbjct: 59 TTTDGLREAFAKFGEVMHARVVTDRVTGFSKGFGFVRYASVEDASKGIEGMDGKFLDGWV 118
Query: 129 IFVDNVRP 136
IF + RP
Sbjct: 119 IFAEYARP 126
>gi|449438165|ref|XP_004136860.1| PREDICTED: uncharacterized protein LOC101215898 [Cucumis sativus]
gi|449478936|ref|XP_004155458.1| PREDICTED: uncharacterized protein LOC101227324 [Cucumis sativus]
Length = 211
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC +S+ST+ L +AF +FG + EA +++D RS+G+G+VT ++ +A+
Sbjct: 7 YRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKAMDEAIK 66
Query: 118 DMNGKLLDGRVIFVDNVRPSRRYNTDASLAR 148
MNG LDGR I VD +P++ D R
Sbjct: 67 AMNGMDLDGRSITVDKAQPNQGSGRDHDGDR 97
>gi|224128992|ref|XP_002328863.1| predicted protein [Populus trichocarpa]
gi|118482403|gb|ABK93124.1| unknown [Populus trichocarpa]
gi|222839293|gb|EEE77630.1| predicted protein [Populus trichocarpa]
Length = 131
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 18/98 (18%)
Query: 61 RCIS--------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEA 112
RC+S +++ST + L DAFS FG+VTEA +I D RS+G+G+V+ + E A
Sbjct: 31 RCMSSSKLFIGGLAWSTDDQSLKDAFSGFGEVTEARVITDRDTGRSRGFGFVSYESTESA 90
Query: 113 QKALVDMNGKLLDGRVIFVDNVRPSRRYNTDASLARQP 150
+AL M+G+ L GR I V Y TD RQP
Sbjct: 91 SEALSAMDGQELGGRNIRVG-------YATD---KRQP 118
>gi|348553582|ref|XP_003462605.1| PREDICTED: putative RNA-binding protein 3-like [Cavia porcellus]
Length = 159
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++FST ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFSTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|404403808|ref|ZP_10995392.1| RNP-1 like RNA-binding protein [Alistipes sp. JC136]
Length = 105
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S+ T+ E L + F+QFG+V A +I D RS+G+G+V +E+A+KA+ +NG
Sbjct: 8 LSWGTSSEGLGNLFAQFGEVASANVITDRETGRSRGFGFVEMPDDEQARKAMEQLNGTNF 67
Query: 125 DGRVIFVDNVRP 136
+G+ I V+ RP
Sbjct: 68 EGQTITVNEARP 79
>gi|24582417|ref|NP_723245.1| CG11266, isoform C [Drosophila melanogaster]
gi|24582419|ref|NP_723246.1| CG11266, isoform D [Drosophila melanogaster]
gi|24582421|ref|NP_723247.1| CG11266, isoform F [Drosophila melanogaster]
gi|24582423|ref|NP_723248.1| CG11266, isoform G [Drosophila melanogaster]
gi|45550943|ref|NP_723244.2| CG11266, isoform E [Drosophila melanogaster]
gi|22945836|gb|AAN10616.1| CG11266, isoform C [Drosophila melanogaster]
gi|22945837|gb|AAN10617.1| CG11266, isoform D [Drosophila melanogaster]
gi|22945838|gb|AAN10618.1| CG11266, isoform F [Drosophila melanogaster]
gi|22945839|gb|AAN10619.1| CG11266, isoform G [Drosophila melanogaster]
gi|45445036|gb|AAN10615.2| CG11266, isoform E [Drosophila melanogaster]
Length = 287
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 34 SLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFE 93
Query: 124 LDGRVIFVDNVRPSRRYNT 142
L GR++ V NV NT
Sbjct: 94 LAGRLMKVGNVTERLDMNT 112
>gi|351723119|ref|NP_001235732.1| uncharacterized protein LOC100526902 [Glycine max]
gi|255631115|gb|ACU15923.1| unknown [Glycine max]
Length = 176
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 54 LVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEE 111
+ +V +RC +++ST+ L D F +FG++ EA +++D RS+G+G+VT ++
Sbjct: 1 MSDVEEYRCFIGGLAWSTSDRKLKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDDKKA 60
Query: 112 AQKALVDMNGKLLDGRVIFVDNVRP 136
+A+ MNG LDGR I VD +P
Sbjct: 61 MDEAIDAMNGMDLDGRTITVDRAQP 85
>gi|406873754|gb|EKD23843.1| hypothetical protein ACD_81C00167G0002 [uncultured bacterium]
Length = 111
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+ +STT++ L D FSQ G V A II+D RSKG+G+V ++++EA+KA+ NGK
Sbjct: 9 GLPYSTTQDALNDLFSQAGTVESAMIIIDKMTGRSKGFGFVEMASDDEAEKAIDMFNGKD 68
Query: 124 LDGRVIFVDNVRP 136
+GR + V+ RP
Sbjct: 69 FEGRSLTVNVARP 81
>gi|359806697|ref|NP_001241034.1| uncharacterized protein LOC100799124 [Glycine max]
gi|255645259|gb|ACU23127.1| unknown [Glycine max]
Length = 275
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 52/75 (69%), Gaps = 2/75 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
VS+ST ++ L +AFS++G+V +A IIMD RS+G+G++T ++ EEA A+ ++G+
Sbjct: 48 GVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQALDGQD 107
Query: 124 LDGRVIFVD--NVRP 136
L GR I V+ N RP
Sbjct: 108 LHGRPIRVNYANERP 122
>gi|221048043|gb|ACL98129.1| hyperosmotic glycine rich protein [Epinephelus coioides]
Length = 175
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T +E LA AF ++G + + +I D RS+G+G+V ++A+ AL MNGK
Sbjct: 11 GLSFETNEESLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNCDDAKDALEGMNGKT 70
Query: 124 LDGRVIFVDNVRPSRRYN 141
LDGR I VD R N
Sbjct: 71 LDGRAIRVDEAGKGGRSN 88
>gi|148235865|ref|NP_001079794.1| cold-inducible RNA-binding protein B [Xenopus laevis]
gi|82247034|sp|Q9DED4.1|CIRBB_XENLA RecName: Full=Cold-inducible RNA-binding protein B; AltName:
Full=Cold-inducible RNA-binding protein 2; Short=xCIRP2;
AltName: Full=Glycine-rich RNA-binding protein CIRP-B
gi|11761319|dbj|BAB19129.1| cold-inducible RNA binding protein 2 [Xenopus laevis]
gi|32450232|gb|AAH54250.1| Xcirp2 protein [Xenopus laevis]
Length = 166
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F T +E L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 11 GLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKA 70
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 71 VDGRQIRVDQAGKS 84
>gi|332531199|ref|ZP_08407112.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
gi|332039306|gb|EGI75719.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
Length = 131
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++++S L AF QFG VT A ++M+ RSKG+G+V ++ EAQ A+ +NG+
Sbjct: 9 NLAYSIRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGLNGQP 68
Query: 124 LDGRVIFVDNVRP 136
L GR + V+ RP
Sbjct: 69 LSGRNVVVNEARP 81
>gi|224286824|gb|ACN41115.1| unknown [Picea sitchensis]
Length = 149
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 43/69 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S TT E L FS+FGQ+ EA ++ D RS+G+G+V +T E+A K M+GK
Sbjct: 50 GLSRQTTDEGLRAKFSEFGQLVEARVVTDRISGRSRGFGFVRYATLEDAAKGKEGMDGKF 109
Query: 124 LDGRVIFVD 132
LDG VIF D
Sbjct: 110 LDGWVIFAD 118
>gi|312283439|dbj|BAJ34585.1| unnamed protein product [Thellungiella halophila]
Length = 259
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC +++ST+ L DAF ++G + EA +++D RS+G+G++T ++ +A+
Sbjct: 7 YRCFIGGLAWSTSDRGLRDAFEKYGHLLEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIA 66
Query: 118 DMNGKLLDGRVIFVDNVRP 136
MNG LDGR I VD +P
Sbjct: 67 AMNGMDLDGRTITVDKAQP 85
>gi|170058744|ref|XP_001865056.1| splicing factor [Culex quinquefasciatus]
gi|167877732|gb|EDS41115.1| splicing factor [Culex quinquefasciatus]
Length = 546
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/83 (40%), Positives = 48/83 (57%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 295 SLHFNITEDMLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFHNADDAKKALEQLNGFE 354
Query: 124 LDGRVIFVDNVRPSRRYNTDASL 146
L GR + V NV T ASL
Sbjct: 355 LAGRPMKVGNVTERLDVTTHASL 377
>gi|224121390|ref|XP_002318570.1| predicted protein [Populus trichocarpa]
gi|222859243|gb|EEE96790.1| predicted protein [Populus trichocarpa]
Length = 255
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 45 RPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYV 104
RPS M+ ++ S +SF T L +AF ++G V EA IIMD RS+G+G+V
Sbjct: 27 RPSIYQAMRCMSSSKLFVGGISFQTDDNSLKEAFDKYGNVVEARIIMDRETGRSRGFGFV 86
Query: 105 TSSTEEEAQKALVDMNGKLLDGRVIFVDNV--RPSRRY 140
T ++ EEA A+ ++G+ L GR + V+ RP R +
Sbjct: 87 TYTSSEEASSAIQALDGQDLHGRRVRVNYATERPQRTF 124
>gi|170071297|ref|XP_001869868.1| splicing factor [Culex quinquefasciatus]
gi|167867202|gb|EDS30585.1| splicing factor [Culex quinquefasciatus]
Length = 524
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/83 (40%), Positives = 48/83 (57%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 273 SLHFNITEDMLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFHNADDAKKALEQLNGFE 332
Query: 124 LDGRVIFVDNVRPSRRYNTDASL 146
L GR + V NV T ASL
Sbjct: 333 LAGRPMKVGNVTERLDVTTHASL 355
>gi|343432668|ref|NP_001230348.1| RNA binding motif (RNP1, RRM) protein 3 [Sus scrofa]
Length = 156
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|469072|dbj|BAA03743.1| RNA-binding gricine-rich protein-1c [Nicotiana sylvestris]
Length = 165
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++TT L +AFSQ+G+V E+ II D RS+G+G+VT E+ + A+
Sbjct: 6 YRCFVGGLAWATTDRTLGEAFSQYGEVLESKIINDRETGRSRGFGFVTFGDEKSMRDAIE 65
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 66 GMNGQDLDGRNITVN 80
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S E L +AF QFG +T A +I D+ RSKG+G+V S+ EEA KA+ +MNG++ G+
Sbjct: 296 SIDDEGLREAFKQFGNITSAKVITDL-NGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGK 354
Query: 128 VIFVDNVRPSRRYNTDASLARQ 149
++V + R+ + A L +Q
Sbjct: 355 PLYVGLAQ--RKEDRKAHLQQQ 374
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D FS FG + ++ DI N SKG+G+V ++E AQ+A+ +NG L++ +
Sbjct: 100 SIDNKALYDTFSSFGNILSCKVVCDI--NGSKGFGFVHYESDESAQRAIEKVNGMLMEDK 157
Query: 128 VIFV 131
+FV
Sbjct: 158 KVFV 161
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Query: 10 RKIQQFNSYFTEDSLLSFSSKPYQVVNYFSLHCIVRPSSDLIMQLVNVSFWRCISVSFST 69
R I++ N ED K V + S + +R D N+ F + + S+ T
Sbjct: 144 RAIEKVNGMLMED-------KKVFVARFKSRNDRMREFGDAAKHFTNL-FVKNLPDSWDT 195
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
+ L + F QFG+V +I D SK +G+++ ++A+ A+ M+ K ++G+ +
Sbjct: 196 --DALLENFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKL 253
Query: 130 F 130
+
Sbjct: 254 Y 254
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
T+ ML D F G V + D+ RS GY YV +A++AL MN ++ G+ I
Sbjct: 14 TEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPI 73
Query: 130 FV 131
+
Sbjct: 74 RI 75
>gi|359807285|ref|NP_001240860.1| uncharacterized protein LOC100815224 [Glycine max]
gi|255645181|gb|ACU23088.1| unknown [Glycine max]
Length = 208
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 54 LVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEE 111
+ +V +RC +++ST+ L D F +FG++ EA +++D RS+G+G+VT ++
Sbjct: 1 MSDVEEFRCFIGGLAWSTSDRKLKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDDKKA 60
Query: 112 AQKALVDMNGKLLDGRVIFVDNVRP 136
+A+ MNG LDGR I VD +P
Sbjct: 61 MDEAIDAMNGIDLDGRTITVDRAQP 85
>gi|224130158|ref|XP_002328668.1| predicted protein [Populus trichocarpa]
gi|222838844|gb|EEE77195.1| predicted protein [Populus trichocarpa]
Length = 142
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 10/90 (11%)
Query: 61 RCIS--------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEA 112
RC+S +SF T L +AF ++G V E IIMD RS+G+G+VT ++ EEA
Sbjct: 35 RCMSSSKIFIGGISFQTDDNGLKEAFDKYGNVVEGIIIMDRDTGRSRGFGFVTYTSSEEA 94
Query: 113 QKALVDMNGKLLDGRVIFVDNV--RPSRRY 140
A+ M+G+ L GR + V+ RP R +
Sbjct: 95 SSAIQAMDGQDLHGRRVRVNYATERPQRTF 124
>gi|344250008|gb|EGW06112.1| Putative RNA-binding protein 3 [Cricetulus griseus]
Length = 169
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
LDGR I VD+ S R + +
Sbjct: 72 LDGRQIRVDHAGKSARGSRGGAFG 95
>gi|217071940|gb|ACJ84330.1| unknown [Medicago truncatula]
Length = 211
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC +++ST+ L D F +FG++TEA +++D RS+G+G+VT ++ + A+
Sbjct: 7 YRCFVGGLAWSTSDRKLRDTFEKFGKLTEAKVVVDKFSGRSRGFGFVTYDEKKVMEDAID 66
Query: 118 DMNGKLLDGRVIFVDNVRP 136
MNG LDGR I VD +P
Sbjct: 67 AMNGIDLDGRTITVDRAQP 85
>gi|312374824|gb|EFR22303.1| hypothetical protein AND_15459 [Anopheles darlingi]
Length = 560
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/83 (40%), Positives = 48/83 (57%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 309 SLHFNITEDMLRGIFEPFGKIDNIQLIMDTDTGRSKGYGFITFHNADDAKKALEQLNGFE 368
Query: 124 LDGRVIFVDNVRPSRRYNTDASL 146
L GR + V NV T ASL
Sbjct: 369 LAGRPMKVGNVTERLDVTTHASL 391
>gi|398810631|ref|ZP_10569445.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
gi|398082488|gb|EJL73237.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
Length = 179
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S L AF QFG VT A ++M+ RSKG+G+V ++ EAQ A+ MNG+
Sbjct: 9 NLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQP 68
Query: 124 LDGRVIFVDNVRP 136
L GR + V+ RP
Sbjct: 69 LGGRSVVVNEARP 81
>gi|319796634|ref|YP_004158274.1| rnp-1 like RNA-binding protein [Variovorax paradoxus EPS]
gi|315599097|gb|ADU40163.1| RNP-1 like RNA-binding protein [Variovorax paradoxus EPS]
Length = 189
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S L AF QFG VT A ++M+ RSKG+G+V ++ EAQ A+ MNG+
Sbjct: 9 NLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQP 68
Query: 124 LDGRVIFVDNVRP 136
L GR + V+ RP
Sbjct: 69 LGGRSVVVNEARP 81
>gi|260221864|emb|CBA30852.1| Putative RNA-binding protein rbpB [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 124
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 52/93 (55%)
Query: 44 VRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGY 103
R S L +L S ++ +S T + L FS+FG+VT A ++MD RSKG+ +
Sbjct: 15 TRADSALTERLTMSSKIYVGNLPYSVTDDSLQSNFSEFGEVTSAKVMMDRDTGRSKGFAF 74
Query: 104 VTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136
V ST AQ A+ +NG+ +DGR I V+ RP
Sbjct: 75 VEMSTPAFAQAAIDGLNGQSVDGRSIVVNLARP 107
>gi|148702008|gb|EDL33955.1| mCG116386, isoform CRA_e [Mus musculus]
Length = 179
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 37 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 96
Query: 124 LDGRVIFVDNV 134
LDGR I VD+
Sbjct: 97 LDGRQIRVDHA 107
>gi|356517261|ref|XP_003527307.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Glycine max]
Length = 145
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
T E L + F++FG+V A ++ D SKG+G+V +T E+A K + M+GK LDG V
Sbjct: 60 TNTERLREEFAKFGEVVHARVVTDRVSGYSKGFGFVQYATIEDAAKGIEGMDGKFLDGWV 119
Query: 129 IFVDNVRP 136
IF + RP
Sbjct: 120 IFAEYARP 127
>gi|337281472|ref|YP_004620944.1| glycine-rich RNA binding protein [Ramlibacter tataouinensis TTB310]
gi|334732549|gb|AEG94925.1| Candidate glycine-rich RNA binding protein [Ramlibacter
tataouinensis TTB310]
Length = 159
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S L AFSQFG V+ A ++M+ RSKG+G+V ++ EAQ A+ MNG+
Sbjct: 9 NLPYSVRDSDLEQAFSQFGAVSSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQP 68
Query: 124 LDGRVIFVDNVRP 136
L GR + V+ RP
Sbjct: 69 LGGRSVVVNEARP 81
>gi|333377706|ref|ZP_08469439.1| hypothetical protein HMPREF9456_01034 [Dysgonomonas mossii DSM
22836]
gi|332883726|gb|EGK04006.1| hypothetical protein HMPREF9456_01034 [Dysgonomonas mossii DSM
22836]
Length = 106
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+S L D F+++G+++ A +IMD RSKGYG+V QKA+ ++NG
Sbjct: 7 GLSYSINDNDLRDLFNEYGEISSAKVIMDKATGRSKGYGFVELEDNAAGQKAIEELNGAE 66
Query: 124 LDGRVIFVDNVRP 136
DGR I V RP
Sbjct: 67 YDGRTISVSEARP 79
>gi|356511826|ref|XP_003524623.1| PREDICTED: uncharacterized protein LOC100782808 [Glycine max]
Length = 274
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 52/75 (69%), Gaps = 2/75 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
VS+ST ++ L +AFS++G+V +A IIMD RS+G+G++T ++ EEA A+ ++G+
Sbjct: 48 GVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQALDGQD 107
Query: 124 LDGRVIFVD--NVRP 136
L GR I V+ N RP
Sbjct: 108 LHGRPIRVNYANERP 122
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S E L +AF QFG +T A +I D+ RSKG+G+V S+ EEA KA+ +MNG++ G+
Sbjct: 296 SIDDEGLREAFKQFGNITSAKVITDL-NGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGK 354
Query: 128 VIFVDNVRPSRRYNTDASLARQ 149
++V + R+ + A L +Q
Sbjct: 355 PLYVGLAQ--RKEDRKAHLQQQ 374
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D FS FG + ++ DI N SKG+G+V ++E AQ+A+ +NG L++ +
Sbjct: 100 SIDNKALYDTFSSFGNILSCKVVCDI--NGSKGFGFVHYESDESAQRAIEKVNGMLMEDK 157
Query: 128 VIFV 131
+FV
Sbjct: 158 KVFV 161
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 10/121 (8%)
Query: 10 RKIQQFNSYFTEDSLLSFSSKPYQVVNYFSLHCIVRPSSDLIMQLVNVSFWRCISVSFST 69
R I++ N ED K V + S + +R D N+ F + + S+ T
Sbjct: 144 RAIEKVNGMLMED-------KKVFVARFKSRNDRMREFGDAAKHFTNL-FVKNLPDSWDT 195
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
+ L F QFG+V +I D SK +G+++ ++A+ A+ M+ K ++G+ +
Sbjct: 196 --DALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKL 253
Query: 130 F 130
+
Sbjct: 254 Y 254
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
T+ ML D F G V + D+ RS GY YV +A++AL MN ++ G+ I
Sbjct: 14 TEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPI 73
Query: 130 FV 131
+
Sbjct: 74 RI 75
>gi|292490317|ref|YP_003525756.1| RNP-1 like RNA-binding protein [Nitrosococcus halophilus Nc4]
gi|291578912|gb|ADE13369.1| RNP-1 like RNA-binding protein [Nitrosococcus halophilus Nc4]
Length = 97
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ T E L AF +G+V+ A +I+D NRSKG+G+V + +E+A+ A+ +MN
Sbjct: 7 NLSYQVTDEELRAAFENYGEVSSAKVIVDKFSNRSKGFGFVEMARQEDAETAIKEMNDSD 66
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ RP
Sbjct: 67 LKGRQIVVNQARP 79
>gi|30692254|ref|NP_849523.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
gi|332661645|gb|AEE87045.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
Length = 126
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T E L FSQFG V ++ II D RS+G+G+VT E+ + A+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 118 DMNGKLLDGRVIFVD 132
+MNGK LDGRVI V+
Sbjct: 66 EMNGKELDGRVITVN 80
>gi|32476441|ref|NP_869435.1| RNA-binding protein [Rhodopirellula baltica SH 1]
gi|32446986|emb|CAD78892.1| RNA-binding protein [Rhodopirellula baltica SH 1]
Length = 206
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 31 PYQVVNYFSLHCIVRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATII 90
P + C+V I + N+ ++SF T+E L AF Q+G+V+ II
Sbjct: 42 PVKRARMREASCLVGDGLQGIRLVTNIY---VGNLSFKATEEELRGAFEQYGEVSAVNII 98
Query: 91 MDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136
MD RS+G+ +V + E A+ A+ ++NG +DGR + V+ RP
Sbjct: 99 MDRETGRSRGFAFVEMADAEGAKDAIENLNGHEIDGRSVTVNEARP 144
>gi|15235002|ref|NP_195637.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
gi|544425|sp|Q03251.1|GRP8_ARATH RecName: Full=Glycine-rich RNA-binding protein 8; AltName:
Full=Protein CCR1
gi|16305|emb|CAA78712.1| glycine rich protein [Arabidopsis thaliana]
gi|166658|gb|AAA20201.1| ORF [Arabidopsis thaliana]
gi|166839|gb|AAA32854.1| RNA-binding protein [Arabidopsis thaliana]
gi|4914438|emb|CAB43641.1| glycine-rich protein (clone AtGRP8) [Arabidopsis thaliana]
gi|7270909|emb|CAB80589.1| glycine-rich protein (clone AtGRP8) [Arabidopsis thaliana]
gi|222423067|dbj|BAH19515.1| AT4G39260 [Arabidopsis thaliana]
gi|332661644|gb|AEE87044.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
Length = 169
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T E L FSQFG V ++ II D RS+G+G+VT E+ + A+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 118 DMNGKLLDGRVIFVD 132
+MNGK LDGRVI V+
Sbjct: 66 EMNGKELDGRVITVN 80
>gi|374376206|ref|ZP_09633864.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
gi|373233046|gb|EHP52841.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
Length = 110
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++ + L + F+ +G+VT A I+ D NRSKG+G+V +T+EEA+ A+ +NG
Sbjct: 7 NLSWNLKDQDLQNLFAPYGEVTSAKIVSDKFTNRSKGFGFVEMATDEEAKAAIEALNGTE 66
Query: 124 LDGRVIFVDNVRPSRRYNTDASLAR 148
+DGR I V+ RP N+ +
Sbjct: 67 VDGRNIVVNESRPKEGGNSGGGYKK 91
>gi|108863012|gb|ABG22105.1| Glycine-rich RNA-binding protein GRP1A, putative, expressed [Oryza
sativa Japonica Group]
Length = 117
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFS FG++ E+ II D RS+G+G+VT S+E+ + A+
Sbjct: 8 YRCFVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIE 67
Query: 118 DMNGKLLDGRVIFVDNVRPSR 138
MNGK LDGR I V+ + R
Sbjct: 68 GMNGKELDGRNITVNEAQSRR 88
>gi|15982739|gb|AAL09710.1| AT3g26420/F20C19_14 [Arabidopsis thaliana]
gi|19699180|gb|AAL90956.1| AT3g26420/F20C19_14 [Arabidopsis thaliana]
Length = 148
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC ++++T+ L DAF ++G + EA +++D RS+G+G++T ++ +A+
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 119 MNGKLLDGRVIFVDNVRP 136
MNG LDGR I VD +P
Sbjct: 68 MNGMDLDGRTITVDKAQP 85
>gi|2624326|emb|CAA05728.1| OsGRP1 [Oryza sativa Japonica Group]
Length = 160
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFS FG++ E+ II D RS+G+G+VT S+E+ + A+
Sbjct: 8 YRCFVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIE 67
Query: 118 DMNGKLLDGRVIFVDNVRPSR 138
MNGK LDGR I V+ + R
Sbjct: 68 GMNGKELDGRNITVNEAQSRR 88
>gi|409044525|gb|EKM54006.1| hypothetical protein PHACADRAFT_257571 [Phanerochaete carnosa
HHB-10118-sp]
Length = 155
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 48/69 (69%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++TT + L AFSQFGQ+ ++ ++ D RS+G+G+VT S+ EAQ A+ +N +
Sbjct: 9 NLSWNTTDDSLRTAFSQFGQILDSIVMRDRDTGRSRGFGFVTFSSANEAQTAITSLNEQE 68
Query: 124 LDGRVIFVD 132
LDGR I V+
Sbjct: 69 LDGRRIRVN 77
>gi|359478318|ref|XP_003632106.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Vitis vinifera]
gi|296084274|emb|CBI24662.3| unnamed protein product [Vitis vinifera]
Length = 108
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T + +L DAF Q+G++ E +I D +SKGYG+V +++++A AL +M+G+
Sbjct: 35 GLSYDTNETILKDAFGQYGEIIEVKVICDHVSGKSKGYGFVQFTSDDDAHIALKEMDGQS 94
Query: 124 LDGRVIFV 131
LDGR I V
Sbjct: 95 LDGRNIRV 102
>gi|157108428|ref|XP_001650224.1| splicing factor [Aedes aegypti]
gi|108879330|gb|EAT43555.1| AAEL005046-PA [Aedes aegypti]
Length = 544
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/83 (40%), Positives = 48/83 (57%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 293 SLHFNITEDMLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFHNADDAKKALEQLNGFE 352
Query: 124 LDGRVIFVDNVRPSRRYNTDASL 146
L GR + V NV T ASL
Sbjct: 353 LAGRPMKVGNVTERLDVTTHASL 375
>gi|440714448|ref|ZP_20895027.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SWK14]
gi|436440644|gb|ELP33948.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SWK14]
Length = 196
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF T+E L AF Q+G+V+ IIMD RS+G+ +V + E A+ A+ ++NG
Sbjct: 61 NLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIENLNGHE 120
Query: 124 LDGRVIFVDNVRP 136
+DGR + V+ RP
Sbjct: 121 IDGRSVTVNEARP 133
>gi|421614043|ref|ZP_16055112.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SH28]
gi|408495250|gb|EKJ99839.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SH28]
Length = 189
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF T+E L AF Q+G+V+ IIMD RS+G+ +V + E A+ A+ ++NG
Sbjct: 61 NLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIENLNGHE 120
Query: 124 LDGRVIFVDNVRP 136
+DGR + V+ RP
Sbjct: 121 IDGRSVTVNEARP 133
>gi|417304381|ref|ZP_12091404.1| protein containing RNA recognition motif, RNP-1 domains
[Rhodopirellula baltica WH47]
gi|449136828|ref|ZP_21772190.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula europaea 6C]
gi|327539333|gb|EGF25954.1| protein containing RNA recognition motif, RNP-1 domains
[Rhodopirellula baltica WH47]
gi|448884533|gb|EMB15023.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula europaea 6C]
Length = 195
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF T+E L AF Q+G+V+ IIMD RS+G+ +V + E A+ A+ ++NG
Sbjct: 61 NLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIENLNGHE 120
Query: 124 LDGRVIFVDNVRP 136
+DGR + V+ RP
Sbjct: 121 IDGRSVTVNEARP 133
>gi|120610816|ref|YP_970494.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
gi|120589280|gb|ABM32720.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
Length = 116
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%)
Query: 67 FSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG 126
+S T E L F++FG VT + I+ D RSKG+G+V S+ E+AQ A+ +NG +DG
Sbjct: 12 YSVTDESLRSNFAEFGGVTSSKIMTDRETGRSKGFGFVEMSSAEDAQSAITGLNGLSVDG 71
Query: 127 RVIFVDNVRP 136
R I V+ RP
Sbjct: 72 RSIVVNLARP 81
>gi|469070|dbj|BAA03741.1| RNA-binding glycine-rich protein-1a [Nicotiana sylvestris]
gi|295393563|gb|ADG03637.1| RNA-binding glycine-rich protein [Nicotiana tabacum]
Length = 156
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++TT + L +AFSQFG++ ++ II D RS+G+G+VT E+ + A+
Sbjct: 6 YRCFVGGLAWATTDQTLGEAFSQFGEILDSKIINDRETGRSRGFGFVTFKDEKAMRDAIE 65
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 66 GMNGQDLDGRNITVN 80
>gi|319765042|ref|YP_004128979.1| rnp-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|330827234|ref|YP_004390537.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans K601]
gi|317119603|gb|ADV02092.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|329312606|gb|AEB87021.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans K601]
Length = 144
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S + L AF QFG VT A ++M+ RSKG+G+V ++ +AQ A+ MNG+
Sbjct: 9 NLPYSVRDQDLEQAFGQFGVVTSAKVMMERDTGRSKGFGFVEMGSDADAQAAINGMNGQS 68
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ RP
Sbjct: 69 LGGRSIVVNEARP 81
>gi|297741463|emb|CBI32594.3| unnamed protein product [Vitis vinifera]
Length = 121
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T + L AFSQFG++ E+ II D RS+G+G+VT S+E+ + A+
Sbjct: 8 YRCFVGGLAWATDDQSLERAFSQFGEILESKIINDRETGRSRGFGFVTFSSEQSMRDAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 68 GMNGQNLDGRNITVN 82
>gi|194336480|ref|YP_002018274.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308957|gb|ACF43657.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 95
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 50/72 (69%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++++ +++ L DAFS+FG+V A+II D RSKG+G+V + EA++A+ MNGK
Sbjct: 7 NLAYTVSEDDLRDAFSEFGEVANASIINDKFSGRSKGFGFVEMPKDSEAREAIESMNGKD 66
Query: 124 LDGRVIFVDNVR 135
L+GR + V+ +
Sbjct: 67 LNGRTVTVNEAK 78
>gi|323650232|gb|ADX97202.1| cold-inducible RNA-binding protein [Perca flavescens]
Length = 80
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF TT+E LA AF +FG + + +I D S+G+G+V E+A+ A+ MNGK
Sbjct: 8 GLSFDTTEESLAAAFGKFGTIEKVDVIKDRDTGYSRGFGFVKYENSEDAKDAMEGMNGKT 67
Query: 124 LDGRVIFVD 132
LDGR I VD
Sbjct: 68 LDGRAIRVD 76
>gi|115489714|ref|NP_001067344.1| Os12g0632000 [Oryza sativa Japonica Group]
gi|77557139|gb|ABA99935.1| Glycine-rich RNA-binding protein GRP1A, putative, expressed [Oryza
sativa Japonica Group]
gi|113649851|dbj|BAF30363.1| Os12g0632000 [Oryza sativa Japonica Group]
gi|125580173|gb|EAZ21319.1| hypothetical protein OsJ_36973 [Oryza sativa Japonica Group]
gi|215769456|dbj|BAH01685.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 162
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFS FG++ E+ II D RS+G+G+VT S+E+ + A+
Sbjct: 8 YRCFVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIE 67
Query: 118 DMNGKLLDGRVIFVDNVRPSR 138
MNGK LDGR I V+ + R
Sbjct: 68 GMNGKELDGRNITVNEAQSRR 88
>gi|326523287|dbj|BAJ88684.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 422
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++ T EML DAF + G V A ++ D RS+GYG+V ST+EE +A+ +NG
Sbjct: 347 NLSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTE 406
Query: 124 LDGRVIFVDNVRPSRRY 140
++GR I V N+ +RY
Sbjct: 407 IEGREIRV-NLALGKRY 422
>gi|359475330|ref|XP_003631658.1| PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Vitis
vinifera]
Length = 162
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T + L AFSQFG++ E+ II D RS+G+G+VT S+E+ + A+
Sbjct: 8 YRCFVGGLAWATDDQSLERAFSQFGEILESKIINDRETGRSRGFGFVTFSSEQSMRDAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 68 GMNGQNLDGRNITVN 82
>gi|387861093|gb|AFK08576.1| glycine-rich RNA binding protein 2a [Camelina sativa]
gi|387861099|gb|AFK08579.1| glycine-rich RNA binding protein 2a [Camelina sativa]
Length = 160
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T + L DAF+ FG+V +A +I+D RS+G+G+V S E A A+ +M+GK
Sbjct: 42 GLSWGTDDQSLRDAFAHFGEVVDAKVIVDRETGRSRGFGFVNFSDETAASAAISEMDGKD 101
Query: 124 LDGRVIFVD--NVRPS 137
L+GR I V+ N RPS
Sbjct: 102 LNGRNIRVNQANDRPS 117
>gi|417396333|gb|JAA45200.1| Putative mrna cleavage and polyadenylation factor i complex subunit
rna15 [Desmodus rotundus]
Length = 158
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|193215305|ref|YP_001996504.1| RNP-1 like RNA-binding protein [Chloroherpeton thalassium ATCC
35110]
gi|193088782|gb|ACF14057.1| RNP-1 like RNA-binding protein [Chloroherpeton thalassium ATCC
35110]
Length = 104
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 48/73 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++ T+ L D FS++G+V A II+D +S+G+G+V E +A++A+ +NG
Sbjct: 7 NLSYTLTENELRDVFSEYGEVASANIIVDKYSGKSRGFGFVDMPNEADAEQAIEALNGSQ 66
Query: 124 LDGRVIFVDNVRP 136
LDGR + V+ RP
Sbjct: 67 LDGRSLKVNEARP 79
>gi|196234692|ref|ZP_03133505.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
gi|196221240|gb|EDY15797.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
Length = 126
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF TT+ L DAF++ G V E ++ D RS+G+ +VT +T +EAQKA+ +GK
Sbjct: 9 NLSFDTTEVDLQDAFAEAGTVQEVALMQDKFTGRSRGFAFVTMATPDEAQKAISIFHGKT 68
Query: 124 LDGRVIFVDNVRP 136
L GR + V+ RP
Sbjct: 69 LQGRPLTVNEARP 81
>gi|197128622|gb|ACH45120.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
Length = 171
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T +E L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEESLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|409080475|gb|EKM80835.1| hypothetical protein AGABI1DRAFT_112564 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197375|gb|EKV47302.1| hypothetical protein AGABI2DRAFT_192533 [Agaricus bisporus var.
bisporus H97]
Length = 168
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 43 IVRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYG 102
IVR + +L++V ++S++TT E L AFS FGQV ++ ++ D RS+G+G
Sbjct: 12 IVRAPPEREAKLMSVKNTVYRNLSWNTTDETLRQAFSDFGQVLDSIVMRDRDTGRSRGFG 71
Query: 103 YVTSSTEEEAQKALVDMNGKLLDGRVIFVD--NVRP 136
+VT S EA A+ +N + LDGR I V+ N RP
Sbjct: 72 FVTFSNSGEADAAINGLNEQELDGRRIKVNMANARP 107
>gi|224059014|ref|XP_002299678.1| predicted protein [Populus trichocarpa]
gi|222846936|gb|EEE84483.1| predicted protein [Populus trichocarpa]
Length = 147
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC +S+ST+ L + F +FG + EA +++D RS+G+G+VT ++ + A+
Sbjct: 7 YRCFIGGLSWSTSDRGLKETFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIE 66
Query: 118 DMNGKLLDGRVIFVDNVRP 136
MNG LDGR I VD +P
Sbjct: 67 GMNGMDLDGRTITVDKAQP 85
>gi|194385818|dbj|BAG65284.1| unnamed protein product [Homo sapiens]
Length = 263
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNV 134
+DGR I VD
Sbjct: 72 VDGRQIRVDQA 82
>gi|91202563|emb|CAJ72202.1| rna binding protein [Candidatus Kuenenia stuttgartiensis]
Length = 126
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT+E L F +FGQVT TII D S+G+G+V + EAQ AL +NGK L+GRV
Sbjct: 12 TTEEELKQVFEEFGQVTSVTIIKDKFSGESRGFGFVEMPSRAEAQAALDSLNGKDLNGRV 71
Query: 129 IFVDNVRP 136
+ V+ P
Sbjct: 72 LNVNEALP 79
>gi|2827657|emb|CAA16611.1| putative protein [Arabidopsis thaliana]
gi|7268798|emb|CAB79003.1| putative protein [Arabidopsis thaliana]
Length = 115
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 50/77 (64%)
Query: 63 ISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGK 122
+ + FST+++ L FS FG++ E +I D RSKGY ++ +++++A A+ M+ +
Sbjct: 8 VDLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRR 67
Query: 123 LLDGRVIFVDNVRPSRR 139
+ +GR+I++D +P +R
Sbjct: 68 MYNGRMIYIDIAKPGKR 84
>gi|338729124|ref|XP_003365829.1| PREDICTED: putative RNA-binding protein 3-like isoform 2 [Equus
caballus]
Length = 135
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|351723185|ref|NP_001236758.1| uncharacterized protein LOC100499841 [Glycine max]
gi|255627057|gb|ACU13873.1| unknown [Glycine max]
Length = 143
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 10/91 (10%)
Query: 57 VSFWRCIS--------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSST 108
+++ RC+S +S+ + L DAFS FG V +A +I D RS+G+G+V S
Sbjct: 27 LNYIRCMSSSKLFIGGLSYGVDDQSLKDAFSGFGDVVDAKVITDRDSGRSRGFGFVNFSN 86
Query: 109 EEEAQKALVDMNGKLLDGRVIFVD--NVRPS 137
+E A AL M+GK L+GR I V N +PS
Sbjct: 87 DESASSALSAMDGKDLNGRSIRVSYANDKPS 117
>gi|431893576|gb|ELK03439.1| Putative RNA-binding protein 3 [Pteropus alecto]
Length = 213
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 69 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 128
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 129 LDGRQIRVDHAGKSAR 144
>gi|326514928|dbj|BAJ99825.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326517426|dbj|BAK00080.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 153
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT + L +AF++FG+V A +I D SKG+G+V T E+A K + M+G+ LDG V
Sbjct: 59 TTTDGLREAFAKFGEVEHARVITDRVTGFSKGFGFVRYVTVEDAAKGIEGMDGEFLDGWV 118
Query: 129 IFVDNVRPSRRYNTDASLARQPAQS 153
IF + RP R QP QS
Sbjct: 119 IFAEYARP-RPPPQMGGATPQPQQS 142
>gi|311780287|gb|ADQ08684.1| putative glycine-rich RNA-binding protein 1 [Malus hupehensis]
Length = 164
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC ++++T E L AFSQ+G++ E+ II D RS+G+G+VT +E+ + A+
Sbjct: 9 RCFVGGLAWATDNEALERAFSQYGEIIESKIINDRETGRSRGFGFVTFGSEQAMRDAIEG 68
Query: 119 MNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 69 MNGQNLDGRNITVN 82
>gi|296142019|gb|ADG96008.1| putative glycine-rich RNA-binding protein 1 [Malus prunifolia]
Length = 171
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC ++++T E L AFSQ+G++ E+ II D RS+G+G+VT +E+ + A+
Sbjct: 9 RCFVGGLAWATDNEALERAFSQYGEIIESKIINDRETGRSRGFGFVTFGSEQAMRDAIEG 68
Query: 119 MNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 69 MNGQNLDGRNITVN 82
>gi|20257707|gb|AAM16019.1| glycine-rich RNA binding protein [Zea mays]
Length = 154
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT S E+ + A+
Sbjct: 18 RCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSXEDAMRSAIEG 77
Query: 119 MNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 78 MNGKELDGRNITVN 91
>gi|413938711|gb|AFW73262.1| chloroplast protein synthesis 4 [Zea mays]
Length = 400
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T+++ L AF FG++ E IIMD RSKGY +V +TEE AL MNG++
Sbjct: 307 GLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKAMNGQI 366
Query: 124 LDGRVIFVDNVRPSRR 139
++G +I VD + R
Sbjct: 367 INGWMIVVDVAKTRSR 382
>gi|195471585|ref|XP_002088083.1| GE14328 [Drosophila yakuba]
gi|194174184|gb|EDW87795.1| GE14328 [Drosophila yakuba]
Length = 590
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 337 SLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFE 396
Query: 124 LDGRVIFVDNV 134
L GR++ V NV
Sbjct: 397 LAGRLMKVGNV 407
>gi|82248148|sp|Q9PTX2.1|CIRBP_RANCA RecName: Full=Cold-inducible RNA-binding protein; Short=BFCIRP;
AltName: Full=Glycine-rich RNA-binding protein CIRP
gi|6682989|dbj|BAA88978.1| BFCIRP [Rana catesbeiana]
Length = 164
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ+ E ++ D RS+G+G+VT E+A+ A+ MNGK
Sbjct: 12 GLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKT 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|259490527|ref|NP_001159310.1| uncharacterized protein LOC100304402 [Zea mays]
gi|223943329|gb|ACN25748.1| unknown [Zea mays]
gi|413938710|gb|AFW73261.1| chloroplast protein synthesis 4 [Zea mays]
Length = 398
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T+++ L AF FG++ E IIMD RSKGY +V +TEE AL MNG++
Sbjct: 305 GLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKAMNGQI 364
Query: 124 LDGRVIFVDNVRPSRR 139
++G +I VD + R
Sbjct: 365 INGWMIVVDVAKTRSR 380
>gi|544426|sp|Q03878.1|GRP1_DAUCA RecName: Full=Glycine-rich RNA-binding protein
gi|18347|emb|CAA41152.1| glycine-rich protein [Daucus carota]
gi|445138|prf||1908438A Gly-rich protein
Length = 157
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T E L AFSQFG +T++ II D RS+G+G+VT E+ + A+
Sbjct: 6 YRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIE 65
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 66 GMNGQELDGRNITVN 80
>gi|115448473|ref|NP_001048016.1| Os02g0730800 [Oryza sativa Japonica Group]
gi|46390469|dbj|BAD15930.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Japonica Group]
gi|46390865|dbj|BAD16369.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Japonica Group]
gi|113537547|dbj|BAF09930.1| Os02g0730800 [Oryza sativa Japonica Group]
gi|218191513|gb|EEC73940.1| hypothetical protein OsI_08808 [Oryza sativa Indica Group]
Length = 399
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T+++ L AF FG++ E IIMD RSKGY ++ +TEE AL MNG++
Sbjct: 301 GLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKAMNGQI 360
Query: 124 LDGRVIFVDNVRPSRR 139
++G +I VD + R
Sbjct: 361 INGWMIVVDVAKHRSR 376
>gi|410988519|ref|XP_004000531.1| PREDICTED: putative RNA-binding protein 3 [Felis catus]
Length = 160
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|357127016|ref|XP_003565182.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Brachypodium distachyon]
Length = 109
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 42/68 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T + L DAFSQ G VTE +I RSKGYG+V S+E EA AL M+ +L
Sbjct: 36 GLSYDTNEIALKDAFSQHGTVTEVKVICHPVTGRSKGYGFVKFSSESEAAAALEKMSNEL 95
Query: 124 LDGRVIFV 131
LDGR I V
Sbjct: 96 LDGRNIRV 103
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L + FS+FG+ ++MD RSKG+G+V EEAQKA+ DMNGK ++GR+++V
Sbjct: 207 LREIFSRFGKTLSVKVMMD-NTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVG- 264
Query: 134 VRPSRRYNTDASLARQ 149
R +R + L R+
Sbjct: 265 -RAQKRLERQSELKRK 279
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D FS FG + ++ D +N S+G+G+V T+E A +A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSRGHGFVHFETQEAATRAIETMNGMLLNDR 166
Query: 128 VIFVDNVR 135
+FV + +
Sbjct: 167 KVFVGHFK 174
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L FS +G +T A ++ + G SKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>gi|145219698|ref|YP_001130407.1| RNP-1 like RNA-binding protein [Chlorobium phaeovibrioides DSM 265]
gi|145205862|gb|ABP36905.1| RNP-1 like RNA-binding protein [Chlorobium phaeovibrioides DSM 265]
Length = 90
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ ++ +++ L DAFS+FGQV A IIMD RSKG+G+V S ++ A++A+ M+ K
Sbjct: 7 NLPYTVSEDDLRDAFSEFGQVESANIIMDKFSGRSKGFGFVEMSDDDAAREAIEAMHNKD 66
Query: 124 LDGRVIFVDNVRP 136
GR I V+ +P
Sbjct: 67 FMGRSIMVNEAKP 79
>gi|296088109|emb|CBI35498.3| unnamed protein product [Vitis vinifera]
Length = 153
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC +S+ST+ L +AF +FG + EA +++D RS+G+G+V+ ++ + A+
Sbjct: 7 YRCFIGGLSWSTSDRSLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVSFDDKQAMEDAIK 66
Query: 118 DMNGKLLDGRVIFVDNVRPSR 138
+M+G LDGR I VD +P++
Sbjct: 67 EMHGMDLDGRSITVDKAQPNQ 87
>gi|221069836|ref|ZP_03545941.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|220714859|gb|EED70227.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
Length = 158
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L AF QFG V A ++M+ RSKG+G+V ++E EAQ A+ MNG+ L GR + V+
Sbjct: 19 LEQAFGQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQGMNGQPLGGRSLVVNE 78
Query: 134 VRP 136
RP
Sbjct: 79 ARP 81
>gi|375103924|ref|ZP_09750185.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
gi|374664655|gb|EHR69440.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
Length = 129
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++++S T L F++ G VT A ++MD RSKG+G+V + EEAQ A+ ++G
Sbjct: 9 NLAYSVTDASLQQQFAECGTVTSAKVMMDRDSGRSKGFGFVEMGSHEEAQAAIRKLHGAS 68
Query: 124 LDGRVIFVDNVRP 136
+DGR + V+ RP
Sbjct: 69 VDGRALVVNEARP 81
>gi|350538645|ref|NP_001233728.1| RNA-binding motif 3 [Cricetulus griseus]
gi|189170130|gb|ACD80090.1| RNA-binding motif 3 [Cricetulus griseus]
Length = 156
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|149744489|ref|XP_001493789.1| PREDICTED: putative RNA-binding protein 3-like isoform 1 [Equus
caballus]
Length = 156
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|90075670|dbj|BAE87515.1| unnamed protein product [Macaca fascicularis]
Length = 135
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|119358437|ref|YP_913081.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
gi|119355786|gb|ABL66657.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
Length = 90
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ + T++ L DAFSQFGQV A II D RSKG+G+V ++EA++A+ MN K
Sbjct: 7 NLPYQVTEDDLRDAFSQFGQVDSANIITDKFSGRSKGFGFVDMPHDDEAREAIESMNDKD 66
Query: 124 LDGRVIFV 131
L GR I V
Sbjct: 67 LKGRTIKV 74
>gi|189339246|ref|NP_446148.1| putative RNA-binding protein 3 [Rattus norvegicus]
gi|149028410|gb|EDL83795.1| RNA binding motif protein 3, isoform CRA_a [Rattus norvegicus]
gi|149028411|gb|EDL83796.1| RNA binding motif protein 3, isoform CRA_a [Rattus norvegicus]
Length = 156
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|30692256|ref|NP_849524.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
gi|332661646|gb|AEE87046.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
Length = 92
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T E L FSQFG V ++ II D RS+G+G+VT E+ + A+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 118 DMNGKLLDGRVIFVD 132
+MNGK LDGRVI V+
Sbjct: 66 EMNGKELDGRVITVN 80
>gi|19920866|ref|NP_609095.1| CG11266, isoform B [Drosophila melanogaster]
gi|24582412|ref|NP_723243.1| CG11266, isoform A [Drosophila melanogaster]
gi|7297213|gb|AAF52478.1| CG11266, isoform A [Drosophila melanogaster]
gi|15292031|gb|AAK93284.1| LD35730p [Drosophila melanogaster]
gi|22945834|gb|AAN10614.1| CG11266, isoform B [Drosophila melanogaster]
gi|220946034|gb|ACL85560.1| CG11266-PA [synthetic construct]
gi|220955788|gb|ACL90437.1| CG11266-PA [synthetic construct]
Length = 594
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 341 SLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFE 400
Query: 124 LDGRVIFVDNVRPSRRYNTDA 144
L GR++ V NV NT +
Sbjct: 401 LAGRLMKVGNVTERLDMNTTS 421
>gi|339626955|ref|YP_004718598.1| RNP-1 like RNA-binding protein [Sulfobacillus acidophilus TPY]
gi|379008663|ref|YP_005258114.1| RNP-1 like RNA-binding protein [Sulfobacillus acidophilus DSM
10332]
gi|339284744|gb|AEJ38855.1| RNP-1 like RNA-binding protein [Sulfobacillus acidophilus TPY]
gi|361054925|gb|AEW06442.1| RNP-1 like RNA-binding protein [Sulfobacillus acidophilus DSM
10332]
Length = 85
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++++STT+E LA AF+Q QV A II D RS+G+G+V + +++A++A+ MNG
Sbjct: 9 NLAWSTTEEELAQAFAQHAQVISARIITDRETGRSRGFGFVEVA-DQDAEQAVEAMNGTQ 67
Query: 124 LDGRVIFVDNVRPSR-RY 140
L GR I V+ RP + RY
Sbjct: 68 LGGRDIIVNEARPRQSRY 85
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L + FS+FG+ ++MD RSKG+G+V EEAQKA+ DMNGK ++GR+++V
Sbjct: 207 LREIFSRFGKTLSVKVMMD-NNGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYVG- 264
Query: 134 VRPSRRYNTDASLARQ 149
R +R + L R+
Sbjct: 265 -RAQKRLERQSELKRK 279
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L FS +G +T A ++ + G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKEFSPYGTITSAKVMTEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D FS FG + ++ D +N S+GYG+V T E A +A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSRGYGFVHFETHEAATRAIETMNGMLLNDR 166
Query: 128 VIFVDNVR 135
+FV + +
Sbjct: 167 KVFVGHFK 174
>gi|222623613|gb|EEE57745.1| hypothetical protein OsJ_08262 [Oryza sativa Japonica Group]
Length = 369
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+SF T+++ L AF FG++ E IIMD RSKGY ++ +TEE AL MNG+++
Sbjct: 272 LSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKAMNGQII 331
Query: 125 DGRVIFVDNVRPSRR 139
+G +I VD + R
Sbjct: 332 NGWMIVVDVAKHRSR 346
>gi|225463887|ref|XP_002264022.1| PREDICTED: uncharacterized protein LOC100256416 isoform 1 [Vitis
vinifera]
gi|359493015|ref|XP_003634493.1| PREDICTED: uncharacterized protein LOC100256416 isoform 2 [Vitis
vinifera]
Length = 207
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC +S+ST+ L +AF +FG + EA +++D RS+G+G+V+ ++ + A+
Sbjct: 7 YRCFIGGLSWSTSDRSLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVSFDDKQAMEDAIK 66
Query: 118 DMNGKLLDGRVIFVDNVRPS 137
+M+G LDGR I VD +P+
Sbjct: 67 EMHGMDLDGRSITVDKAQPN 86
>gi|18415425|ref|NP_567594.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|51971865|dbj|BAD44597.1| putative protein [Arabidopsis thaliana]
gi|107738041|gb|ABF83619.1| At4g20030 [Arabidopsis thaliana]
gi|332658864|gb|AEE84264.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 152
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 50/76 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ FST+++ L FS FG++ E +I D RSKGY ++ +++++A A+ M+ ++
Sbjct: 46 NLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRM 105
Query: 124 LDGRVIFVDNVRPSRR 139
+GR+I++D +P +R
Sbjct: 106 YNGRMIYIDIAKPGKR 121
>gi|444518692|gb|ELV12325.1| Putative RNA-binding protein 3 [Tupaia chinensis]
Length = 154
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|242015973|ref|XP_002428613.1| RNA-binding region-containing protein, putative [Pediculus humanus
corporis]
gi|212513276|gb|EEB15875.1| RNA-binding region-containing protein, putative [Pediculus humanus
corporis]
Length = 593
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T + ++A+KAL +NG
Sbjct: 271 SLHFNITEDMLRGIFEPFGKIDSIQLIMDPETGRSKGYGFITFHSADDAKKALEQLNGFE 330
Query: 124 LDGRVIFVDNV 134
L GR + V NV
Sbjct: 331 LAGRPMKVGNV 341
>gi|13785947|gb|AAK39523.1| RNA-binding motif protein 3 [Rattus norvegicus]
Length = 127
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|395007942|ref|ZP_10391636.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
gi|394314048|gb|EJE51000.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
Length = 117
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%)
Query: 67 FSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG 126
+S T L FS+FG VT A ++MD RSKG+G+V ++ E AQ A+ ++G +DG
Sbjct: 12 YSVTDSTLESNFSEFGNVTSAKVMMDRETGRSKGFGFVEMASAEVAQAAITGLHGMSVDG 71
Query: 127 RVIFVDNVRP 136
R I V+ RP
Sbjct: 72 RSIVVNLARP 81
>gi|119589928|gb|EAW69522.1| cold inducible RNA binding protein, isoform CRA_c [Homo sapiens]
gi|119589930|gb|EAW69524.1| cold inducible RNA binding protein, isoform CRA_c [Homo sapiens]
Length = 297
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNV 134
+DGR I VD
Sbjct: 72 VDGRQIRVDQA 82
>gi|121607153|ref|YP_994960.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae EF01-2]
gi|121551793|gb|ABM55942.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae EF01-2]
Length = 175
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S L AF QFG V A ++M+ RSKG+G+V ++ EAQ A+ MNG+
Sbjct: 9 NLPYSVRDGDLEQAFGQFGAVASAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQP 68
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ RP
Sbjct: 69 LGGRSIVVNEARP 81
>gi|544421|sp|Q99069.1|GRP1_SORBI RecName: Full=Glycine-rich RNA-binding protein 1
gi|21623|emb|CAA40863.1| glycine-rich RNA-binding protein [Sorghum bicolor]
Length = 142
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 41/59 (69%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132
L AFS +G+V E+ II+D RS+G+G+VT STEE + A+ MNGK LDGR I V+
Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVN 61
>gi|194862772|ref|XP_001970115.1| GG10454 [Drosophila erecta]
gi|190661982|gb|EDV59174.1| GG10454 [Drosophila erecta]
Length = 593
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 340 SLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFE 399
Query: 124 LDGRVIFVDNVRPSRRYNTDA 144
L GR++ V NV NT +
Sbjct: 400 LAGRLMKVGNVTERLDMNTTS 420
>gi|21388662|dbj|BAC00787.1| glycine-rich RNA-binding protein [Physcomitrella patens]
Length = 155
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT + + +AFS FG+VTE II D RS+G+G+VT +T+++A+ AL ++G+
Sbjct: 48 GLAWGTTDDNIKEAFSAFGEVTEVKIICDRDTGRSRGFGFVTFATDQDAEAALQALDGRD 107
Query: 124 LDGRVIFVD 132
L GR I V+
Sbjct: 108 LAGRTIRVN 116
>gi|212546539|ref|XP_002153423.1| glycine-rich RNA-binding protein, putative [Talaromyces marneffei
ATCC 18224]
gi|210064943|gb|EEA19038.1| glycine-rich RNA-binding protein, putative [Talaromyces marneffei
ATCC 18224]
Length = 135
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT + L F +FG + EA +I D NRS+G+G+V ST+ EA A+ MN +
Sbjct: 8 GLAWHTTDDTLRSGFEKFGTIEEAIVIKDRDTNRSRGFGFVRFSTDAEADAAIEGMNNQD 67
Query: 124 LDGRVIFVD 132
DGRVI VD
Sbjct: 68 FDGRVIRVD 76
>gi|195338839|ref|XP_002036031.1| GM16278 [Drosophila sechellia]
gi|194129911|gb|EDW51954.1| GM16278 [Drosophila sechellia]
Length = 596
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 343 SLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFE 402
Query: 124 LDGRVIFVDNVRPSRRYNTDA 144
L GR++ V NV NT +
Sbjct: 403 LAGRLMKVGNVTERLDMNTTS 423
>gi|194758325|ref|XP_001961412.1| GF14957 [Drosophila ananassae]
gi|190615109|gb|EDV30633.1| GF14957 [Drosophila ananassae]
Length = 594
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 341 SLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFE 400
Query: 124 LDGRVIFVDNVRPSRRYNTDA 144
L GR++ V NV NT +
Sbjct: 401 LAGRLMKVGNVTERLDMNTSS 421
>gi|326487400|dbj|BAJ89684.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511469|dbj|BAJ87748.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511763|dbj|BAJ92026.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326514088|dbj|BAJ92194.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326527877|dbj|BAJ88990.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534068|dbj|BAJ89384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++ T EML DAF + G V A ++ D RS+GYG+V ST+EE +A+ +NG
Sbjct: 231 NLSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTE 290
Query: 124 LDGRVIFVDNVRPSRRY 140
++GR I V N+ +RY
Sbjct: 291 IEGREIRV-NLALGKRY 306
>gi|21554348|gb|AAM63455.1| unknown [Arabidopsis thaliana]
Length = 152
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 50/76 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ FST+++ L FS FG++ E +I D RSKGY ++ +++++A A+ M+ ++
Sbjct: 46 NLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMQRSKGYAFIQFTSQDDAFLAIETMDRRM 105
Query: 124 LDGRVIFVDNVRPSRR 139
+GR+I++D +P +R
Sbjct: 106 YNGRMIYIDIAKPGKR 121
>gi|417396785|gb|JAA45426.1| Putative mrna cleavage and polyadenylation factor i complex subunit
rna15 [Desmodus rotundus]
Length = 190
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|357143694|ref|XP_003573016.1| PREDICTED: uncharacterized protein LOC100843274 [Brachypodium
distachyon]
Length = 387
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T+++ L AF FG++ E IIMD RSKGY ++ +TE+ AL MNG++
Sbjct: 294 GLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEDAGGAALKAMNGEI 353
Query: 124 LDGRVIFVDNVRPSRRYNTDASLARQPAQS 153
++G +I VD + + R RQP S
Sbjct: 354 INGWMIVVDVAKTNLRN-------RQPPSS 376
>gi|119589931|gb|EAW69525.1| cold inducible RNA binding protein, isoform CRA_d [Homo sapiens]
Length = 311
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 24 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 83
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 84 VDGRQIRVDQAGKS 97
>gi|351730017|ref|ZP_08947708.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 115
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%)
Query: 67 FSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG 126
+S T +L FS+FG VT A ++MD RSKG+G+V ++ E AQ A+ ++G +DG
Sbjct: 12 YSVTDSVLESNFSEFGNVTSAKVMMDRETGRSKGFGFVEMASAEVAQAAISALHGMSVDG 71
Query: 127 RVIFVDNVRP 136
R I V+ RP
Sbjct: 72 RSIVVNLARP 81
>gi|301764797|ref|XP_002917810.1| PREDICTED: putative RNA-binding protein 3-like isoform 1
[Ailuropoda melanoleuca]
Length = 156
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|346465875|gb|AEO32782.1| hypothetical protein [Amblyomma maculatum]
Length = 558
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ + +I D+ NRSKGYG++T E+A+KAL +NG
Sbjct: 305 SLHFNITEDMLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQLNGFE 364
Query: 124 LDGRVIFVDNV 134
L GR + V +V
Sbjct: 365 LAGRPMKVGHV 375
>gi|281353659|gb|EFB29243.1| hypothetical protein PANDA_006181 [Ailuropoda melanoleuca]
Length = 148
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|255535545|ref|YP_003095916.1| RNA-binding protein [Flavobacteriaceae bacterium 3519-10]
gi|255341741|gb|ACU07854.1| RNA-binding protein [Flavobacteriaceae bacterium 3519-10]
Length = 122
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++++ST +E L D FS+FG+V+ A II D RS+G+G+V S +E+ + A+ +NGK
Sbjct: 8 NINYSTREESLQDLFSEFGEVSSAKIITDRETGRSRGFGFVEMS-DEDGKNAIEALNGKE 66
Query: 124 LDGRVIFVDNVRP 136
LDG+ + V +P
Sbjct: 67 LDGKELNVSEAKP 79
>gi|387861095|gb|AFK08577.1| glycine-rich RNA binding protein 2b [Camelina sativa]
gi|387861101|gb|AFK08580.1| glycine-rich RNA binding protein 2b [Camelina sativa]
Length = 156
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T L DAF+ FG+V +A +I+D RS+G+G+V S E A A+ +M+GK
Sbjct: 42 GLSWGTDDASLRDAFAHFGEVVDAKVIVDRETGRSRGFGFVNFSDETAASAAISEMDGKD 101
Query: 124 LDGRVIFVD--NVRPS 137
L+GR I V+ N RPS
Sbjct: 102 LNGRNIRVNPANDRPS 117
>gi|311698159|gb|ADQ00374.1| glycine-rich RNA-binding protein [Sequoia sempervirens]
Length = 194
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC ++++T L DAFS FG+V E+ I+ D RS+G+G+VT S E+ A+
Sbjct: 9 RCFVGGLAWATDDRSLHDAFSPFGEVLESKIVSDRETGRSRGFGFVTFSDEQAMMDAIEA 68
Query: 119 MNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 69 MNGKELDGRNITVN 82
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L + FS+FG+ ++MD RSKG+G+V EEAQKA+ DMNGK ++GR+++V
Sbjct: 207 LREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVG- 264
Query: 134 VRPSRRYNTDASLARQ 149
R +R + L R+
Sbjct: 265 -RAQKRLERQSELKRK 279
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D FS FG + ++ D +N S+G+G+V T+E A +A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSRGHGFVHFETQEAATRAIQTMNGMLLNDR 166
Query: 128 VIFVDNVR 135
+FV + +
Sbjct: 167 KVFVGHFK 174
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L FS +G +T A ++ + G SKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>gi|261862339|ref|NP_001159882.1| putative RNA-binding protein 3 isoform 2 [Mus musculus]
gi|261862342|ref|NP_001159883.1| putative RNA-binding protein 3 isoform 2 [Mus musculus]
gi|6093936|sp|O89086.1|RBM3_MOUSE RecName: Full=Putative RNA-binding protein 3; AltName:
Full=RNA-binding motif protein 3
gi|3395381|dbj|BAA32060.1| rbm3 [Mus musculus]
gi|12834559|dbj|BAB22957.1| unnamed protein product [Mus musculus]
gi|12840849|dbj|BAB24981.1| unnamed protein product [Mus musculus]
gi|13879226|gb|AAH06580.1| Rbm3 protein [Mus musculus]
gi|15983757|gb|AAL10707.1| RNA-binding motif protein 3 [Mus musculus]
gi|74180334|dbj|BAE32335.1| unnamed protein product [Mus musculus]
gi|74198712|dbj|BAE39828.1| unnamed protein product [Mus musculus]
gi|74228699|dbj|BAE21846.1| unnamed protein product [Mus musculus]
gi|76780243|gb|AAI06177.1| Rbm3 protein [Mus musculus]
gi|148702004|gb|EDL33951.1| mCG116386, isoform CRA_a [Mus musculus]
gi|148702009|gb|EDL33956.1| mCG116386, isoform CRA_a [Mus musculus]
Length = 153
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPS 137
LDGR I VD+ S
Sbjct: 72 LDGRQIRVDHAGKS 85
>gi|15231557|ref|NP_189273.1| RNA recognition motif and CCHC-type zinc finger domain-containing
protein [Arabidopsis thaliana]
gi|15983477|gb|AAL11606.1|AF424613_1 AT3g26420/F20C19_14 [Arabidopsis thaliana]
gi|9294301|dbj|BAB02203.1| unnamed protein product [Arabidopsis thaliana]
gi|15451066|gb|AAK96804.1| Unknown protein [Arabidopsis thaliana]
gi|18377412|gb|AAL66872.1| unknown protein [Arabidopsis thaliana]
gi|62320797|dbj|BAD93728.1| RNA-binding protein [Arabidopsis thaliana]
gi|110742443|dbj|BAE99140.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|332643635|gb|AEE77156.1| RNA recognition motif and CCHC-type zinc finger domain-containing
protein [Arabidopsis thaliana]
Length = 245
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T+ L DAF ++G + EA +++D RS+G+G++T ++ +A+
Sbjct: 7 YRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIA 66
Query: 118 DMNGKLLDGRVIFVDNVRP 136
MNG LDGR I VD +P
Sbjct: 67 AMNGMDLDGRTITVDKAQP 85
>gi|355757333|gb|EHH60858.1| RNA-binding motif protein 3 [Macaca fascicularis]
Length = 157
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|302811189|ref|XP_002987284.1| hypothetical protein SELMODRAFT_37571 [Selaginella moellendorffii]
gi|300144919|gb|EFJ11599.1| hypothetical protein SELMODRAFT_37571 [Selaginella moellendorffii]
Length = 163
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC +S+ST + L +F QFG++ EA +I+D G RS+G+G+VT + + +A+
Sbjct: 4 RCFVGGLSWSTDDQALESSFRQFGRILEAKVIIDRGSGRSRGFGFVTFADQRAMDEAIDR 63
Query: 119 MNGKLLDGRVIFVDNVRP 136
++ K LDGRV+ V+ P
Sbjct: 64 LHNKELDGRVVTVNKALP 81
>gi|195577213|ref|XP_002078467.1| GD23448 [Drosophila simulans]
gi|194190476|gb|EDX04052.1| GD23448 [Drosophila simulans]
Length = 608
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 355 SLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFE 414
Query: 124 LDGRVIFVDNVRPSRRYNTDA 144
L GR++ V NV NT +
Sbjct: 415 LAGRLMKVGNVTERLDMNTTS 435
>gi|55778182|gb|AAH86491.1| Rbm3 protein [Mus musculus]
Length = 128
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPS 137
LDGR I VD+ S
Sbjct: 72 LDGRQIRVDHAGKS 85
>gi|387914322|gb|AFK10770.1| cold-inducible RNA-binding protein-like protein [Callorhinchus
milii]
gi|392876160|gb|AFM86912.1| cold-inducible RNA-binding protein-like protein [Callorhinchus
milii]
Length = 133
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SFST ++ L + FS++GQ++E +I D S+G+G++T +A+ AL+ MNGK
Sbjct: 11 GLSFSTDEQSLEEVFSEYGQISEVRVIKDRDTQLSRGFGFITFENPGDAKDALLAMNGKS 70
Query: 124 LDGRVIFVD 132
+DGR I VD
Sbjct: 71 IDGRQIRVD 79
>gi|158516903|gb|ABW70168.1| putative glycine-rich RNA-binding protein 2 [Bambusa oldhamii]
Length = 162
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T + L DAF+ FG+V EA +I D +S+G+G+V+ S ++A+ A+ M+G+
Sbjct: 43 GLSWGTDDQSLKDAFTSFGEVVEARVITDRDTGKSRGFGFVSFSNGDDAKNAMSSMDGQE 102
Query: 124 LDGRVIFVD--NVRPS 137
L+GR I V+ N RP+
Sbjct: 103 LEGRNIHVNFANERPA 118
>gi|168016725|ref|XP_001760899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687908|gb|EDQ74288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 155
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT + + +AFS FG+VTE II D RS+G+G+VT +T+++A+ AL ++G+
Sbjct: 48 GLAWGTTDDNIKEAFSAFGEVTEVKIICDRDTGRSRGFGFVTFATDQDAEAALQALDGRD 107
Query: 124 LDGRVIFVD 132
L GR I V+
Sbjct: 108 LAGRTIRVN 116
>gi|111162637|gb|ABH07505.1| glycine-rich RNA-binding protein [Nicotiana attenuata]
Length = 152
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++TT + L DAFSQFG++ ++ II D RS+G+G+VT E+ + A+
Sbjct: 6 YRCFVGGLAWATTDQTLGDAFSQFGEILDSKIINDRETGRSRGFGFVTFKDEKAMRDAIE 65
Query: 118 DMNGKLLDGRVIFVDNVRP 136
M G+ LDGR I V+ +
Sbjct: 66 GMKGQDLDGRNITVNEAQS 84
>gi|37497112|ref|NP_058089.2| putative RNA-binding protein 3 isoform 1 [Mus musculus]
gi|261862337|ref|NP_001159881.1| putative RNA-binding protein 3 isoform 1 [Mus musculus]
gi|26340316|dbj|BAC33821.1| unnamed protein product [Mus musculus]
gi|26352956|dbj|BAC40108.1| unnamed protein product [Mus musculus]
gi|37589528|gb|AAH59098.1| Rbm3 protein [Mus musculus]
Length = 154
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPS 137
LDGR I VD+ S
Sbjct: 72 LDGRQIRVDHAGKS 85
>gi|351706516|gb|EHB09435.1| Putative RNA-binding protein 3 [Heterocephalus glaber]
Length = 157
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPS 137
LDGR I VD+ S
Sbjct: 72 LDGRQIRVDHAGKS 85
>gi|442761059|gb|JAA72688.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Ixodes ricinus]
Length = 235
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ + +I D+ NRSKGYG++T E+A+KAL +NG
Sbjct: 151 SLHFNITEDMLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQLNGFE 210
Query: 124 LDGRVIFVDNV 134
L GR + V +V
Sbjct: 211 LAGRPMKVGHV 221
>gi|357150983|ref|XP_003575643.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Brachypodium distachyon]
Length = 108
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 48/71 (67%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+SF TT+E L + FS FG + EA ++ D R KG+G+V S++ A+KA+ M+G+++
Sbjct: 33 LSFYTTEEELKNIFSPFGAIEEARLMRDNQTGRPKGFGFVKYSSQVAAEKAVKAMDGRII 92
Query: 125 DGRVIFVDNVR 135
GR+IFV+ +
Sbjct: 93 RGRIIFVETAK 103
>gi|224105391|ref|XP_002313795.1| predicted protein [Populus trichocarpa]
gi|222850203|gb|EEE87750.1| predicted protein [Populus trichocarpa]
Length = 128
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++TT ++L +AFSQ+G++ ++ II D RS+G+G+VT E+ + A+
Sbjct: 6 YRCFVGGLAWATTDQVLQEAFSQYGEIIDSKIINDRETGRSRGFGFVTFGNEKAMRDAID 65
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 66 GMNGQDLDGRNITVN 80
>gi|392592716|gb|EIW82042.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 589
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S++ + LA F++ G+V AT+ MD RS+G+GYV ST E +KA +++NGK +
Sbjct: 340 LSWNVDNDWLAKEFAECGEVVSATVQMDRSTGRSRGFGYVHFSTSEAVEKA-IELNGKEI 398
Query: 125 DGRVIFVDNVRPSRRYNTDASLARQ 149
DGR + VD P N DAS ++
Sbjct: 399 DGRAVNVDKSNPP---NKDASREKR 420
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF + L +AFS+ G+V + D R KG+GYV S E A+KA M G
Sbjct: 439 NLSFGMNDDALWEAFSEHGEVKNVRLPTDRESGRPKGFGYVEFSDVETAKKAHAAMQGVE 498
Query: 124 LDGRVIFVDNVRP 136
LDGR + +D +P
Sbjct: 499 LDGRSVRLDFSQP 511
>gi|308272084|emb|CBX28692.1| Glycine-rich RNA-binding protein 8 [uncultured Desulfobacterium
sp.]
Length = 127
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ ++ L AF Q G+V +II D RSKG+G+V S++ EAQ A+ +NGK
Sbjct: 7 NLSYEVNEDDLRQAFEQLGKVDSVSIINDKYSGRSKGFGFVEMSSDAEAQAAIEGLNGKE 66
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ RP
Sbjct: 67 LKGRAINVNEARP 79
>gi|302815033|ref|XP_002989199.1| hypothetical protein SELMODRAFT_37572 [Selaginella moellendorffii]
gi|300143099|gb|EFJ09793.1| hypothetical protein SELMODRAFT_37572 [Selaginella moellendorffii]
Length = 166
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC +S+ST + L +F QFG++ EA +I+D G RS+G+G+VT + + +A+
Sbjct: 4 RCFVGGLSWSTDDQALESSFRQFGRILEAKVIIDRGSGRSRGFGFVTFADQRAMDEAIDR 63
Query: 119 MNGKLLDGRVIFVDNVRP 136
++ K LDGRV+ V+ P
Sbjct: 64 LHNKELDGRVVTVNKALP 81
>gi|389744399|gb|EIM85582.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 262
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S TT+ L D FS+FG+V + TI+ D +RS+G+G++ ST EA+K + ++NG
Sbjct: 81 GLSIRTTERDLDDEFSRFGRVEKVTIVYDQRSDRSRGFGFIKMSTVAEAEKCIQELNGVD 140
Query: 124 LDGRVIFVD 132
L+GR I VD
Sbjct: 141 LNGRRIRVD 149
>gi|154416377|ref|XP_001581211.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121915436|gb|EAY20225.1| hypothetical protein TVAG_021720 [Trichomonas vaginalis G3]
Length = 202
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF TT+E L FS+FG V + I + +SKG+G++ +T+EEA KA+ +MN K
Sbjct: 51 NLSFETTEESLKIKFSEFGNVISSRIPVRAQSGKSKGFGFIEYATQEEADKAIAEMNKKE 110
Query: 124 LDGRVIFVD 132
+GR I VD
Sbjct: 111 FEGRTIVVD 119
>gi|242823058|ref|XP_002488014.1| glycine-rich RNA-binding protein, putative [Talaromyces stipitatus
ATCC 10500]
gi|218712935|gb|EED12360.1| glycine-rich RNA-binding protein, putative [Talaromyces stipitatus
ATCC 10500]
Length = 134
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT + L F +FG + EA +I D NRS+G+G+V +T+ EA A+ MN +
Sbjct: 8 GLAWHTTDDTLRQGFEKFGTIEEAIVIKDRDTNRSRGFGFVRFATDAEADAAIDGMNNQE 67
Query: 124 LDGRVIFVD 132
DGRVI VD
Sbjct: 68 FDGRVIRVD 76
>gi|373854326|ref|ZP_09597124.1| RNP-1 like RNA-binding protein [Opitutaceae bacterium TAV5]
gi|391231688|ref|ZP_10267894.1| RRM domain-containing RNA-binding protein [Opitutaceae bacterium
TAV1]
gi|372472193|gb|EHP32205.1| RNP-1 like RNA-binding protein [Opitutaceae bacterium TAV5]
gi|391221349|gb|EIP99769.1| RRM domain-containing RNA-binding protein [Opitutaceae bacterium
TAV1]
Length = 122
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF T+++ L AF QFG VT+ + MD R +G+ +VT ST EEA+ A +NG
Sbjct: 10 NMSFKTSEDELRSAFGQFGNVTDVYVAMDKMTGRPRGFAFVTMSTPEEAKIAAEKLNGVD 69
Query: 124 LDGRVIFVDNVRP 136
L GR + V+ RP
Sbjct: 70 LGGRALTVNEARP 82
>gi|426257071|ref|XP_004022158.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Ovis aries]
gi|426257073|ref|XP_004022159.1| PREDICTED: putative RNA-binding protein 3 isoform 2 [Ovis aries]
gi|426257075|ref|XP_004022160.1| PREDICTED: putative RNA-binding protein 3 isoform 3 [Ovis aries]
gi|426257077|ref|XP_004022161.1| PREDICTED: putative RNA-binding protein 3 isoform 4 [Ovis aries]
gi|426257079|ref|XP_004022162.1| PREDICTED: putative RNA-binding protein 3 isoform 5 [Ovis aries]
Length = 160
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T + L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|417397313|gb|JAA45690.1| Putative rasgap sh3 binding protein rasputin [Desmodus rotundus]
Length = 218
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|410255528|gb|JAA15731.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
Length = 157
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|381207415|ref|ZP_09914486.1| RNA-binding region RNP-1 (RNA recognition motif) [SAR324 cluster
bacterium JCVI-SC AAA005]
Length = 117
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQK 114
+NV+ + ++++S T+E L DAF QFG+V + +IIMD RSKG+G+V + EA+
Sbjct: 25 INVNIY-VGNLAYSVTEEQLRDAFGQFGEVDKVSIIMDRMTGRSKGFGFVEMQDDSEAEA 83
Query: 115 ALVDMNGKLLDGRVIFVD 132
A+ +N + ++GR + V+
Sbjct: 84 AIRGLNEQPINGRAVRVN 101
>gi|115481496|ref|NP_001064341.1| Os10g0321700 [Oryza sativa Japonica Group]
gi|110288867|gb|ABG66004.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113638950|dbj|BAF26255.1| Os10g0321700 [Oryza sativa Japonica Group]
Length = 317
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 61 RCIS--------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEA 112
RC+S +S+ T + L +AF+ +G+V EA +I+D RS+G+G+VT ++ +EA
Sbjct: 26 RCMSSSKLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEA 85
Query: 113 QKALVDMNGKLLDGRVIFV 131
A+ M+GK L GR++ V
Sbjct: 86 AAAITGMDGKDLQGRIVRV 104
>gi|5803137|ref|NP_006734.1| putative RNA-binding protein 3 [Homo sapiens]
gi|383872909|ref|NP_001244635.1| RNA binding motif (RNP1, RRM) protein 3 [Macaca mulatta]
gi|332860686|ref|XP_521047.2| PREDICTED: putative RNA-binding protein 3 isoform 2 [Pan
troglodytes]
gi|332860688|ref|XP_003317502.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Pan
troglodytes]
gi|397471359|ref|XP_003807263.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Pan paniscus]
gi|397471361|ref|XP_003807264.1| PREDICTED: putative RNA-binding protein 3 isoform 2 [Pan paniscus]
gi|402910082|ref|XP_003917720.1| PREDICTED: putative RNA-binding protein 3 [Papio anubis]
gi|426395802|ref|XP_004064149.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Gorilla
gorilla gorilla]
gi|426395804|ref|XP_004064150.1| PREDICTED: putative RNA-binding protein 3 isoform 2 [Gorilla
gorilla gorilla]
gi|1710620|sp|P98179.1|RBM3_HUMAN RecName: Full=Putative RNA-binding protein 3; AltName:
Full=RNA-binding motif protein 3; AltName: Full=RNPL
gi|881954|gb|AAB17212.1| RNPL [Homo sapiens]
gi|13905080|gb|AAH06825.1| RNA binding motif (RNP1, RRM) protein 3 [Homo sapiens]
gi|119571152|gb|EAW50767.1| RNA binding motif (RNP1, RRM) protein 3, isoform CRA_c [Homo
sapiens]
gi|119571153|gb|EAW50768.1| RNA binding motif (RNP1, RRM) protein 3, isoform CRA_c [Homo
sapiens]
gi|380815298|gb|AFE79523.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|380815300|gb|AFE79524.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|380815302|gb|AFE79525.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|383420491|gb|AFH33459.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|383420493|gb|AFH33460.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|384948600|gb|AFI37905.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|384948602|gb|AFI37906.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|410228038|gb|JAA11238.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
Length = 157
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|392404677|ref|YP_006441289.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
gi|390612631|gb|AFM13783.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
Length = 141
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++++ T E L AF FGQVT I+ D RS+G+ +V E AQ A+ +MNGK
Sbjct: 7 NLAYNATDEELRSAFEAFGQVTSVKIVRDRDTGRSRGFAFVEMEDGEGAQNAVAEMNGKD 66
Query: 124 LDGRVIFVDNVRP 136
L GR + V+ RP
Sbjct: 67 LKGRNLVVNEARP 79
>gi|332255488|ref|XP_003276864.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Nomascus
leucogenys]
Length = 157
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|118489085|gb|ABK96349.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 171
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++TT ++L +AFSQ+G++ ++ II D RS+G+G+VT E+ + A+
Sbjct: 7 YRCFVGGLAWATTDQVLQEAFSQYGEIIDSKIINDRETGRSRGFGFVTFGNEKAMRDAID 66
Query: 118 DMNGKLLDGRVIFVDNVRP 136
MNG+ LDGR I V+ +
Sbjct: 67 GMNGQDLDGRNITVNEAQS 85
>gi|118481677|gb|ABK92779.1| unknown [Populus trichocarpa]
gi|118481702|gb|ABK92791.1| unknown [Populus trichocarpa]
gi|118482754|gb|ABK93295.1| unknown [Populus trichocarpa]
gi|118483202|gb|ABK93505.1| unknown [Populus trichocarpa]
Length = 170
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++TT ++L +AFSQ+G++ ++ II D RS+G+G+VT E+ + A+
Sbjct: 7 YRCFVGGLAWATTDQVLQEAFSQYGEIIDSKIINDRETGRSRGFGFVTFGNEKAMRDAID 66
Query: 118 DMNGKLLDGRVIFVDNVRP 136
MNG+ LDGR I V+ +
Sbjct: 67 GMNGQDLDGRNITVNEAQS 85
>gi|357119387|ref|XP_003561423.1| PREDICTED: glycine-rich RNA-binding protein blt801-like
[Brachypodium distachyon]
Length = 161
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L DAFS FG++ ++ II D RS+G+G+VT ++E+ + A+
Sbjct: 6 YRCFVGGLAWATDDRGLQDAFSSFGEIIDSKIINDRETGRSRGFGFVTFASEQSMRDAIE 65
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 66 GMNGKDLDGRNITVN 80
>gi|71897051|ref|NP_001026518.1| cold-inducible RNA-binding protein [Gallus gallus]
gi|53128363|emb|CAG31295.1| hypothetical protein RCJMB04_4m1 [Gallus gallus]
Length = 190
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|392882418|gb|AFM90041.1| cold-inducible RNA-binding protein-like protein [Callorhinchus
milii]
gi|392884370|gb|AFM91017.1| cold-inducible RNA-binding protein-like protein [Callorhinchus
milii]
Length = 178
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F T ++ L + F+++G V+E +I + RSKG+G+VT ++A+ AL MNGK
Sbjct: 11 GINFETDEQTLEEVFAKYGDVSEVIVIRERDTQRSKGFGFVTFENPDDARDALAGMNGKT 70
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD+ S
Sbjct: 71 VDGRQIRVDHAGKS 84
>gi|211906474|gb|ACJ11730.1| glycine-rich RNA-binding protein [Gossypium hirsutum]
Length = 168
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 52 MQLVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTE 109
M +V F RC ++++T L +AFS FG++ E+ II D RS+G+G+VT E
Sbjct: 1 MAAADVEF-RCFVGGLAWATDDRALEEAFSAFGEIVESKIINDRETGRSRGFGFVTFRDE 59
Query: 110 EEAQKALVDMNGKLLDGRVIFVDNVRPSR 138
+ + A+ MNG+ LDGR I V+ + R
Sbjct: 60 KAMRDAIEGMNGQNLDGRNITVNEAQSRR 88
>gi|194334049|ref|YP_002015909.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271]
gi|194311867|gb|ACF46262.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271]
Length = 90
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ + T+E L +AF +FG V+ A II D RSKG+G+V S+ ++A +A+ +N
Sbjct: 7 NLDYGVTEEDLREAFGEFGDVSSANIITDKFTGRSKGFGFVEMSSSDDANEAIESLNDTD 66
Query: 124 LDGRVIFVDNV-----RPSRRY 140
L+GR I V+ RP+RRY
Sbjct: 67 LNGRTIKVNEAKPRAERPARRY 88
>gi|346978360|gb|EGY21812.1| glycine-rich RNA-binding protein [Verticillium dahliae VdLs.17]
Length = 175
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT+E L F +FG V EA ++ D RS+G+G+V S +E+AQKA+ MN
Sbjct: 8 GLAWHTTEETLRSRFEEFGAVDEAVVVKDRDTGRSRGFGFVRYSQDEDAQKAIDAMNNVE 67
Query: 124 LDGRVIFVD 132
DGR I VD
Sbjct: 68 FDGRTIRVD 76
>gi|260787130|ref|XP_002588608.1| hypothetical protein BRAFLDRAFT_251348 [Branchiostoma floridae]
gi|229273773|gb|EEN44619.1| hypothetical protein BRAFLDRAFT_251348 [Branchiostoma floridae]
Length = 130
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 63 ISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGK 122
+ +S+ T++ L AFS+FG VTE +I D RS+G+G+V S EA A DM+ +
Sbjct: 5 VGLSWGTSEASLCQAFSRFGTVTECKVIRDHWTGRSRGFGFVKFSAPSEADVARKDMHFQ 64
Query: 123 LLDGRVIFVDNVRPSRRYNTDASLARQPAQS 153
LDGR I VD + R+ + AS R ++
Sbjct: 65 HLDGRTIRVDYAKY--RFGSAASNERYTCRN 93
>gi|291407441|ref|XP_002719942.1| PREDICTED: RNA binding motif protein 3 [Oryctolagus cuniculus]
Length = 155
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|121583453|ref|YP_973884.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
gi|120596707|gb|ABM40142.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
Length = 150
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ ++ E L +F QFG VT A ++M+ RSKG+G+V + + +AQ A+ MNG+
Sbjct: 9 NLPYTVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMANDAQAQAAINGMNGQP 68
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ RP
Sbjct: 69 LGGRSITVNEARP 81
>gi|2331133|gb|AAB66885.1| glycine-rich protein [Oryza sativa Japonica Group]
Length = 161
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFS +G++ E+ II D RS+G+G+VT S+E+ + A+
Sbjct: 8 YRCFVGGLAWATDNRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIE 67
Query: 118 DMNGKLLDGRVIFVDNVRPSR 138
MNGK LDGR I V+ + R
Sbjct: 68 GMNGKELDGRNITVNEAQSRR 88
>gi|345313668|ref|XP_001512332.2| PREDICTED: cold-inducible RNA-binding protein-like [Ornithorhynchus
anatinus]
Length = 270
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|77735511|ref|NP_001029450.1| cold-inducible RNA-binding protein [Bos taurus]
gi|74353851|gb|AAI02774.1| Cold inducible RNA binding protein [Bos taurus]
gi|296485364|tpg|DAA27479.1| TPA: cold inducible RNA binding protein [Bos taurus]
Length = 213
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|388858327|emb|CCF48115.1| related to glycine-rich RNA-binding protein [Ustilago hordei]
Length = 193
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 52/76 (68%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++TT + LA AFS +GQ+T+ ++ D RS+G+G+VT +T+ EA A+ +N +
Sbjct: 9 NLSWNTTDDSLAHAFSAYGQLTDYIVMKDRETGRSRGFGFVTFATQGEADAAIAALNEQE 68
Query: 124 LDGRVIFVD--NVRPS 137
LDGR I V+ N RP+
Sbjct: 69 LDGRRIRVNMANSRPA 84
>gi|213406493|ref|XP_002174018.1| nucleolar protein [Schizosaccharomyces japonicus yFS275]
gi|212002065|gb|EEB07725.1| nucleolar protein [Schizosaccharomyces japonicus yFS275]
Length = 690
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++FSTT L D FS V A ++ D +SKG+G+VT S E+A +AL ++ K
Sbjct: 13 NLTFSTTSNDLTDFFSNAAPVKHAVVVTDKETGQSKGFGFVTFSLHEDAVRALEELKNKK 72
Query: 124 LDGRVIFVDNVRPSRRYNTDASLARQPAQ 152
LDGR++ ++ P +R + ++P Q
Sbjct: 73 LDGRILRMEFAAPRKRNGETSDKPKKPEQ 101
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 78 FSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132
F++FG+V E + G R G+ +V AQKA+ +N +DGRV+ VD
Sbjct: 129 FAKFGKVREIKVPTK-GGGRMCGFAFVWMKDRASAQKAMDTLNATEIDGRVVAVD 182
>gi|410343221|gb|JAA40557.1| cold inducible RNA binding protein [Pan troglodytes]
Length = 203
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 46/69 (66%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 43 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 102
Query: 124 LDGRVIFVD 132
+DGR I VD
Sbjct: 103 VDGRQIRVD 111
>gi|327290660|ref|XP_003230040.1| PREDICTED: cold-inducible RNA-binding protein-like [Anolis
carolinensis]
Length = 176
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|348501352|ref|XP_003438234.1| PREDICTED: cold-inducible RNA-binding protein A-like [Oreochromis
niloticus]
Length = 183
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ LA AF ++G + + +I D RS+G+G+V E+A+ AL MNGK
Sbjct: 11 GLSFETNEDSLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNAEDAKDALDAMNGKT 70
Query: 124 LDGRVIFVDNV 134
LDGR I VD
Sbjct: 71 LDGRAIRVDEA 81
>gi|258564224|ref|XP_002582857.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237908364|gb|EEP82765.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 146
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 11/92 (11%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT E L + FS++G + EA ++ D NRS+G+G+V ++E EA A+ M+ +
Sbjct: 8 GLAWHTTDETLREGFSKYGTIEEAIVVKDRDTNRSRGFGFVRFASEAEADAAMNAMSNQE 67
Query: 124 LDGRVIFVDNVRPSRRYNTDASLARQPAQSPE 155
DGR+I VD + RQP Q E
Sbjct: 68 FDGRMIRVDK-----------AADRQPGQRSE 88
>gi|148927167|ref|ZP_01810792.1| RNP-1 like RNA-binding protein [candidate division TM7 genomosp.
GTL1]
gi|147887382|gb|EDK72831.1| RNP-1 like RNA-binding protein [candidate division TM7 genomosp.
GTL1]
Length = 108
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S++++TT + L F++ G+V EA ++ D RSKG+G+VT +E+A A+ +++
Sbjct: 9 SLAYATTDDSLRAHFAEKGEVEEAKVVTDRDSGRSKGFGFVTYVNDEDADTAIKELDNSE 68
Query: 124 LDGRVIFVDNVRP 136
LDGR I V+ RP
Sbjct: 69 LDGRNIHVNEARP 81
>gi|121583148|ref|YP_973589.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
gi|120596410|gb|ABM39847.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
Length = 148
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ ++ E L +F QFG VT A ++M+ RSKG+G+V + + +AQ A+ MNG+
Sbjct: 9 NLPYTVRDEDLQQSFGQFGTVTSAKVMMERDTGRSKGFGFVEMANDAQAQAAINGMNGQP 68
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ RP
Sbjct: 69 LGGRSITVNEARP 81
>gi|388566786|ref|ZP_10153228.1| RNA recognition motif-containing protein [Hydrogenophaga sp. PBC]
gi|388265964|gb|EIK91512.1| RNA recognition motif-containing protein [Hydrogenophaga sp. PBC]
Length = 133
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ ++ E L AFS FG V A ++M+ RSKG+G+V ++ EAQ A+ MNG+
Sbjct: 9 NLPYTVRDEDLQQAFSAFGAVNSAKVMMERETGRSKGFGFVEMGSDSEAQSAIQGMNGQS 68
Query: 124 LDGRVIFVDNVRP 136
L GR + V+ RP
Sbjct: 69 LGGRSLVVNEARP 81
>gi|297804934|ref|XP_002870351.1| hypothetical protein ARALYDRAFT_493528 [Arabidopsis lyrata subsp.
lyrata]
gi|297316187|gb|EFH46610.1| hypothetical protein ARALYDRAFT_493528 [Arabidopsis lyrata subsp.
lyrata]
Length = 154
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T + L DAF+ FG+V +A +I+D RS+G+G+V + E A A+ +M+GK
Sbjct: 41 GLSWGTDDQSLRDAFAHFGEVVDAKVIVDRETGRSRGFGFVNFNDEGAASAAISEMDGKD 100
Query: 124 LDGRVIFVD--NVRPS 137
L+GR I V+ N RPS
Sbjct: 101 LNGRNIRVNVANERPS 116
>gi|356541091|ref|XP_003539016.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 207
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T + L AFSQ+G++ E II D RS+G+G+VT ++E+ + A+
Sbjct: 44 YRCFVGGLAWATDDQALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQSMKDAIE 103
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 104 GMNGQNLDGRNITVN 118
>gi|395854422|ref|XP_003799690.1| PREDICTED: putative RNA-binding protein 3 [Otolemur garnettii]
Length = 155
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSTFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
LDGR I VD S R S
Sbjct: 72 LDGRQIRVDRAGKSARGTRGGSFG 95
>gi|358056531|dbj|GAA97500.1| hypothetical protein E5Q_04178 [Mixia osmundae IAM 14324]
Length = 287
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 62 CISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNG 121
+S +T + L D F++ G+V + ++ D RS+G+ +VT +E++A+KA+ D+NG
Sbjct: 53 VFGLSVNTRERDLEDVFTRIGEVDKVVVVYDQRSERSRGFAFVTMRSEDDAEKAIADLNG 112
Query: 122 KLLDGRVIFVD---NVRPSR 138
+ +DGR + VD RP R
Sbjct: 113 QEIDGRRVRVDYSLTTRPHR 132
>gi|215820610|ref|NP_001135964.1| RNA binding motif protein 39 [Nasonia vitripennis]
Length = 516
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T+EML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 261 SLLFNITEEMLKGIFEPFGKIENIQLIMDPETGRSKGYGFLTFRNADDAKKALEQLNGFE 320
Query: 124 LDGRVIFVDNV 134
L GR + V NV
Sbjct: 321 LAGRPMKVGNV 331
>gi|195116809|ref|XP_002002944.1| GI10246 [Drosophila mojavensis]
gi|193913519|gb|EDW12386.1| GI10246 [Drosophila mojavensis]
Length = 617
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 364 SLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFE 423
Query: 124 LDGRVIFVDNV 134
L GR + V NV
Sbjct: 424 LAGRPMKVGNV 434
>gi|21388660|dbj|BAC00786.1| glycine-rich RNA-binding protein [Physcomitrella patens]
Length = 178
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC ++++TT L +AF FG+V + +I D RS+G+G+VT + E +A+ D
Sbjct: 6 RCFVGGLAWATTDGSLEEAFRPFGEVVQCKVITDRETGRSRGFGFVTFADENSMNEAIKD 65
Query: 119 MNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 66 MNGKELDGRNITVN 79
>gi|344292751|ref|XP_003418089.1| PREDICTED: putative RNA-binding protein 3-like [Loxodonta africana]
Length = 154
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|169244425|gb|ACA50486.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
gi|306415963|gb|ADM86856.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
gi|385718874|gb|AFI71864.1| Glycin-rich RNA binding protein [Oryza sativa]
Length = 161
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFS +G++ E+ II D RS+G+G+VT S+E+ + A+
Sbjct: 8 YRCFVGGLAWATDDRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIE 67
Query: 118 DMNGKLLDGRVIFVDNVRPSR 138
MNGK LDGR I V+ + R
Sbjct: 68 GMNGKELDGRNITVNEAQSRR 88
>gi|125537516|gb|EAY84004.1| hypothetical protein OsI_39235 [Oryza sativa Indica Group]
Length = 161
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFS +G++ E+ II D RS+G+G+VT S+E+ + A+
Sbjct: 8 YRCFVGGLAWATDDRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIE 67
Query: 118 DMNGKLLDGRVIFVDNVRPSR 138
MNGK LDGR I V+ + R
Sbjct: 68 GMNGKELDGRNITVNEAQSRR 88
>gi|297804134|ref|XP_002869951.1| hypothetical protein ARALYDRAFT_492869 [Arabidopsis lyrata subsp.
lyrata]
gi|297315787|gb|EFH46210.1| hypothetical protein ARALYDRAFT_492869 [Arabidopsis lyrata subsp.
lyrata]
Length = 152
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 50/76 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ FST+++ L FS FG++ E +I D RSKGY ++ +++++A A+ M+ ++
Sbjct: 46 NLPFSTSEDFLKREFSAFGEIAEVKLIRDESMKRSKGYAFIQFTSQDDAFLAIETMDRRM 105
Query: 124 LDGRVIFVDNVRPSRR 139
+GR+I++D +P +R
Sbjct: 106 YNGRMIYIDIAKPGKR 121
>gi|2267567|gb|AAB63581.1| glycine-rich RNA binding protein 1 [Pelargonium x hortorum]
gi|2267569|gb|AAB63582.1| glycine-rich RNA binding protein 2 [Pelargonium x hortorum]
Length = 166
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFSQ+G+V E+ II D RS+G+G+VT S E+ A+
Sbjct: 8 YRCFVGGLAWATDDHALEQAFSQYGEVVESKIINDRETGRSRGFGFVTFSNEKSMNDAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 68 GMNGQNLDGRNITVN 82
>gi|407262829|ref|XP_003945671.1| PREDICTED: putative RNA-binding protein 3-like [Mus musculus]
Length = 154
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPS 137
LDGR I VD+ S
Sbjct: 72 LDGRQIRVDHAGKS 85
>gi|47271546|ref|NP_112409.2| cold-inducible RNA-binding protein [Rattus norvegicus]
gi|46623308|gb|AAH69219.1| Cold inducible RNA binding protein [Rattus norvegicus]
Length = 172
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|159163576|pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 19 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 78
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 79 VDGRQIRVDQAGKS 92
>gi|225175153|ref|ZP_03729149.1| RNP-1 like RNA-binding protein [Dethiobacter alkaliphilus AHT 1]
gi|225169329|gb|EEG78127.1| RNP-1 like RNA-binding protein [Dethiobacter alkaliphilus AHT 1]
Length = 82
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +STT++ L + FS+ GQV A II + RSKGYG+V EE+A+K +++MNG
Sbjct: 9 NIPWSTTEDQLREYFSEHGQVLNARIITERATGRSKGYGFV-EVPEEDAEK-MIEMNGTE 66
Query: 124 LDGRVIFVDNVRP 136
L+GR + V+ +P
Sbjct: 67 LEGRKLVVNEAKP 79
>gi|355702927|gb|EHH29418.1| hypothetical protein EGK_09841 [Macaca mulatta]
Length = 202
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 125 DGRVIFVDNVRPS 137
DGR I VD S
Sbjct: 73 DGRQIRVDQAGKS 85
>gi|296273514|ref|YP_003656145.1| RNP-1 like RNA-binding protein [Arcobacter nitrofigilis DSM 7299]
gi|296097688|gb|ADG93638.1| RNP-1 like RNA-binding protein [Arcobacter nitrofigilis DSM 7299]
Length = 92
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ TT+E L FSQ+G+V+ +I D R+KG+G+V + + A KA+ ++NGK
Sbjct: 7 NMSYGTTEEGLTTLFSQYGEVSSVKLITDRDTGRAKGFGFVAMNDDSAALKAIEELNGKE 66
Query: 124 LDGRVIFVDNVRP 136
DGR + ++ +P
Sbjct: 67 YDGRTLRINEAKP 79
>gi|255573326|ref|XP_002527590.1| conserved hypothetical protein [Ricinus communis]
gi|223533029|gb|EEF34792.1| conserved hypothetical protein [Ricinus communis]
Length = 66
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 59 FWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
W+ +SF TT+E L +AF FG++ E ++MD NR +G+ ++ +TEEE+QKA+
Sbjct: 3 LWK--RISFRTTEESLRNAFQNFGKLVEVNLVMDKIANRPRGFAFLRYATEEESQKAIEG 60
Query: 119 MNGKL 123
M+GK+
Sbjct: 61 MHGKV 65
>gi|90076360|dbj|BAE87860.1| unnamed protein product [Macaca fascicularis]
Length = 207
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|90077754|dbj|BAE88557.1| unnamed protein product [Macaca fascicularis]
Length = 172
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 125 DGRVIFVDNVRPS 137
DGR I VD S
Sbjct: 73 DGRQIRVDQAGKS 85
>gi|431922216|gb|ELK19307.1| Cold-inducible RNA-binding protein [Pteropus alecto]
Length = 220
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|432101154|gb|ELK29438.1| Cold-inducible RNA-binding protein [Myotis davidii]
Length = 204
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|355755275|gb|EHH59022.1| hypothetical protein EGM_09015 [Macaca fascicularis]
Length = 202
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 125 DGRVIFVDNVRPS 137
DGR I VD S
Sbjct: 73 DGRQIRVDQAGKS 85
>gi|449273022|gb|EMC82651.1| Cold-inducible RNA-binding protein [Columba livia]
Length = 153
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|91786529|ref|YP_547481.1| RNA recognition motif-containing protein [Polaromonas sp. JS666]
gi|91695754|gb|ABE42583.1| RNA-binding region RNP-1 (RNA recognition motif) [Polaromonas sp.
JS666]
Length = 134
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ ++ E L +F FG +T A ++M+ RSKG+G+V ++ EAQ A+ MNG+
Sbjct: 9 NLPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAGMNGQS 68
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ RP
Sbjct: 69 LGGRSITVNEARP 81
>gi|398803602|ref|ZP_10562623.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
gi|398096229|gb|EJL86556.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
Length = 133
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ ++ E L +F FG +T A ++M+ RSKG+G+V ++ EAQ A+ MNG+
Sbjct: 9 NLPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAGMNGQS 68
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ RP
Sbjct: 69 LGGRSITVNEARP 81
>gi|296235404|ref|XP_002762884.1| PREDICTED: putative RNA-binding protein 3 [Callithrix jacchus]
Length = 159
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|197128630|gb|ACH45128.1| putative cold inducible RNA binding protein variant 2c [Taeniopygia
guttata]
Length = 175
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|224077836|ref|XP_002305429.1| predicted protein [Populus trichocarpa]
gi|118481826|gb|ABK92850.1| unknown [Populus trichocarpa]
gi|222848393|gb|EEE85940.1| predicted protein [Populus trichocarpa]
Length = 165
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++TT + L +AFSQ+G++ ++ II D RS+G+G+VT + E+ + A+
Sbjct: 7 YRCFVGGLAWATTDQSLQEAFSQYGEIIDSKIINDRETGRSRGFGFVTFNNEKAMRDAID 66
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 67 GMNGQDLDGRNITVN 81
>gi|390600853|gb|EIN10247.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 329
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S T + L D FS+FGQV + TI+ D RS+G+G++ +T E+A KA+ ++NG
Sbjct: 81 GLSIRTQERDLDDEFSRFGQVEKVTIVYDQRSGRSRGFGFIKMATVEDATKAIENLNGVD 140
Query: 124 LDGRVIFVD 132
L+GR I VD
Sbjct: 141 LNGRRIRVD 149
>gi|344243389|gb|EGV99492.1| Cold-inducible RNA-binding protein [Cricetulus griseus]
Length = 184
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|226469234|emb|CAX70096.1| RNA-binding protein 39 [Schistosoma japonicum]
Length = 327
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ ++ T+EML F FG++ + +I D NRS+GYG+VT ++A+KAL +NG
Sbjct: 73 SLHYNITEEMLKGIFEPFGKIEDIKLIKDPATNRSQGYGFVTYVNSDDAKKALDQLNGFE 132
Query: 124 LDGRVIFVDNVRPSRRYNTDASL 146
L GR + V++V Y ++L
Sbjct: 133 LAGRPMKVNHVTERSEYACLSAL 155
>gi|393245114|gb|EJD52625.1| hypothetical protein AURDEDRAFT_111257 [Auricularia delicata
TFB-10046 SS5]
Length = 103
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++TT E L AF FGQ+ ++ ++ D RS+G+G+VT + +EA A+ +N +
Sbjct: 9 NLSWNTTDETLRSAFQDFGQILDSIVMRDRDTGRSRGFGFVTFGSPQEADSAIQALNDQE 68
Query: 124 LDGRVIFVD--NVRPS 137
LDGR I V+ N RPS
Sbjct: 69 LDGRRIKVNLANARPS 84
>gi|6680946|ref|NP_031731.1| cold-inducible RNA-binding protein [Mus musculus]
gi|346644681|ref|NP_001231002.1| cold-inducible RNA-binding protein [Cricetulus griseus]
gi|46395643|sp|P60826.1|CIRBP_CRIGR RecName: Full=Cold-inducible RNA-binding protein; AltName: Full=A18
hnRNP; AltName: Full=Glycine-rich RNA-binding protein
CIRP
gi|46397383|sp|P60825.1|CIRBP_RAT RecName: Full=Cold-inducible RNA-binding protein; AltName: Full=A18
hnRNP; AltName: Full=Glycine-rich RNA-binding protein
CIRP
gi|46397384|sp|P60824.1|CIRBP_MOUSE RecName: Full=Cold-inducible RNA-binding protein; AltName: Full=A18
hnRNP; AltName: Full=Glycine-rich RNA-binding protein
CIRP
gi|1060919|dbj|BAA11213.1| CIRP [Mus musculus]
gi|1783168|dbj|BAA19092.1| CIRP [Rattus norvegicus]
gi|12852647|dbj|BAB29491.1| unnamed protein product [Mus musculus]
gi|34099624|gb|AAQ57122.1| cold-inducible RNA binding protein [Cricetulus griseus]
gi|49522692|gb|AAH75699.1| Cold inducible RNA binding protein [Mus musculus]
gi|74209036|dbj|BAE21245.1| unnamed protein product [Mus musculus]
gi|115345819|gb|ABI95367.1| cold-inducible RNA-binding protein [Cricetulus griseus]
gi|148699640|gb|EDL31587.1| cold inducible RNA binding protein, isoform CRA_c [Mus musculus]
gi|149034580|gb|EDL89317.1| cold inducible RNA binding protein, isoform CRA_c [Rattus
norvegicus]
gi|149034581|gb|EDL89318.1| cold inducible RNA binding protein, isoform CRA_c [Rattus
norvegicus]
Length = 172
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|20152613|emb|CAD29693.1| putative glycine rich protein [Rumex obtusifolius]
Length = 168
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T + L AFS +GQV E+ II D RS+G+G+VT S+E+ + A+
Sbjct: 7 YRCFVGGLAWATDDQSLERAFSNYGQVLESKIINDRETGRSRGFGFVTFSSEQAMRDAIE 66
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 67 GMNGQDLDGRNITVN 81
>gi|42567949|ref|NP_197404.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332005259|gb|AED92642.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 172
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S ++ L FS+FGQVT II + +S GYGYV +++E+AQ A+ MNGK DGR
Sbjct: 87 SVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGR 146
Query: 128 VIFVDNVRPS----RRYNTD 143
I V +P RR ++D
Sbjct: 147 FILVKFGQPGLSRRRRPHSD 166
>gi|20975278|dbj|BAB92956.1| cold inducible RNA-binding protein beta [Hyla japonica]
Length = 166
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L F ++GQ++E ++ D RS+G+G+VT E+A+ A+ MNGK
Sbjct: 13 GLSFDTEEQNLEQVFGKYGQISEVVVVKDRETQRSRGFGFVTFENPEDAKDAMEAMNGKS 72
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 73 VDGRQIRVDQAGKS 86
>gi|397642327|gb|EJK75167.1| hypothetical protein THAOC_03118, partial [Thalassiosira oceanica]
Length = 452
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +ST + L F FG VT+ + M+ G +R +G+G+VT ST + A+ A+ M+
Sbjct: 25 NLDYSTDEPQLRSVFGAFGAVTDVFLPMERGTSRPRGFGFVTLSTRQAAEDAIAKMDQSQ 84
Query: 124 LDGRVIFVDNVRPSRRYNTDASLARQPAQSP 154
LDGR I V+ RP R A + +P P
Sbjct: 85 LDGRTIRVNESRP-RGEGPGARRSNEPGTGP 114
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF T +E + F Q+G V++ + D R +G+ +VT +EA+ A +NG
Sbjct: 134 NLSFDTNEEAVRSMFEQYGTVSDCFLPSDRDTGRPRGFAFVTMPA-KEAETACNKVNGME 192
Query: 124 LDGRVIFVDNVRP 136
LDGR + V+ +P
Sbjct: 193 LDGRTVRVNEAQP 205
>gi|197128619|gb|ACH45117.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
gi|197128620|gb|ACH45118.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
gi|197128623|gb|ACH45121.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
gi|197128625|gb|ACH45123.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
gi|197128627|gb|ACH45125.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
gi|197128628|gb|ACH45126.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
Length = 171
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|441656594|ref|XP_003277032.2| PREDICTED: cold-inducible RNA-binding protein [Nomascus leucogenys]
Length = 144
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|168035555|ref|XP_001770275.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678492|gb|EDQ64950.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 106
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++TT L +AF FG+V + +I D RS+G+G+VT + E +A+
Sbjct: 2 FRCFVGGLAWATTDGSLEEAFRPFGEVVQCKVITDRETGRSRGFGFVTFADENSMNEAIK 61
Query: 118 DMNGKLLDGRVIFVD 132
DMNGK LDGR I V+
Sbjct: 62 DMNGKELDGRNITVN 76
>gi|337281471|ref|YP_004620943.1| glycine-rich RNA binding protein [Ramlibacter tataouinensis TTB310]
gi|334732548|gb|AEG94924.1| Candidate glycine-rich RNA binding protein [Ramlibacter
tataouinensis TTB310]
Length = 128
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
+ AFSQFG V+ A ++M+ RSKG+G+V S+ EAQ A+ MNG+ + GR + V+
Sbjct: 19 MEQAFSQFGTVSSAKVMMERDTGRSKGFGFVEMSSPAEAQAAIEGMNGQQIGGRGLVVNE 78
Query: 134 VRP 136
RP
Sbjct: 79 ARP 81
>gi|326509231|dbj|BAJ91532.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510271|dbj|BAJ87352.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 252
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 51/79 (64%), Gaps = 8/79 (10%)
Query: 61 RCIS--------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEA 112
RC+S +S++T + L DAFS +G++ +A II+D RS+G+G++T + EE+A
Sbjct: 26 RCMSSSKLFVGGLSYTTDEGSLRDAFSHYGEIIDAKIIVDRDTGRSRGFGFITYAAEEQA 85
Query: 113 QKALVDMNGKLLDGRVIFV 131
A++ ++GK L GR + V
Sbjct: 86 SSAIMALDGKDLHGRNLRV 104
>gi|197128626|gb|ACH45124.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
Length = 171
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|432915990|ref|XP_004079241.1| PREDICTED: cold-inducible RNA-binding protein-like [Oryzias
latipes]
Length = 174
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ LA AF ++G + + +I D RS+G+G+V E+A+ AL MNGK
Sbjct: 11 GLSFETNEDSLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNVEDAKDALDAMNGKT 70
Query: 124 LDGRVIFVD 132
LDGR I VD
Sbjct: 71 LDGRAIRVD 79
>gi|212722916|ref|NP_001132731.1| uncharacterized protein LOC100194217 [Zea mays]
gi|194695242|gb|ACF81705.1| unknown [Zea mays]
gi|413933459|gb|AFW68010.1| responsive to abscisic acid15 [Zea mays]
Length = 96
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T+ E L +AF+ +G++ ++ +I D RS+G+G+VT S+E A+
Sbjct: 8 YRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
+MNGK LDGR I V+
Sbjct: 68 NMNGKELDGRNITVN 82
>gi|296422065|ref|XP_002840583.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636802|emb|CAZ84774.1| unnamed protein product [Tuber melanosporum]
Length = 559
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+S++ + L + F QFG++ ++ D RSKG+GYV +T E A+KAL +M GK
Sbjct: 308 SLSWNVDEGWLRNEFEQFGEIAAVRVVTDRESGRSKGFGYVEYTTNEAAKKALEEMKGKD 367
Query: 124 LDGRVIFVDNVRP 136
+DGR I VD P
Sbjct: 368 IDGRTINVDFSAP 380
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF ++++ F FG + I D + KG+ Y+ + A+KA+ +MNG L
Sbjct: 408 NLSFEADEQIVQTEFEGFGNIVGLRIPTDPESGQPKGFCYIQYDRVDSARKAVEEMNGAL 467
Query: 124 LDGRVIFVDNVRP 136
+ GR I D P
Sbjct: 468 VAGRAIRTDFSTP 480
>gi|30585341|gb|AAP36943.1| Homo sapiens cold inducible RNA binding protein [synthetic
construct]
gi|61371531|gb|AAX43684.1| cold inducible RNA binding protein [synthetic construct]
gi|61371536|gb|AAX43685.1| cold inducible RNA binding protein [synthetic construct]
Length = 173
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|302810024|ref|XP_002986704.1| hypothetical protein SELMODRAFT_182522 [Selaginella moellendorffii]
gi|300145592|gb|EFJ12267.1| hypothetical protein SELMODRAFT_182522 [Selaginella moellendorffii]
Length = 730
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 46/68 (67%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++++T++E LA F Q+G+V + +I D NRSKGYGYV + EEA +A+ +++ +
Sbjct: 231 NLAYTTSEEELASLFGQYGEVVQVHLICDKETNRSKGYGYVGFTLPEEATRAMTELDNSI 290
Query: 124 LDGRVIFV 131
GR++ V
Sbjct: 291 FQGRLLHV 298
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD---- 125
T + L + F GQVT+A + M +S+ +G+V ++EEA+ A+ N LD
Sbjct: 17 TDDKLREHFGAKGQVTDAKV-MRTRDGKSRRFGFVGFYSQEEAESAVAYFNRSFLDTSRL 75
Query: 126 ----GRVIFVDNVRPSRRYNTDASLARQPAQSPEEN 157
R + VRP R++ +S A + +PEE
Sbjct: 76 VCEVARSVGDAAVRPWSRHSKGSS-AYEKTHAPEEK 110
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+V+F T++ L FS FGQV + + N +G+ +V T++EAQ A +
Sbjct: 632 NVAFEATRKDLKQLFSPFGQVKKVKLPKKFDGNH-RGFAFVEFVTKQEAQNAFEALGSSH 690
Query: 124 LDGRVIFVDNVR 135
L GR + ++ R
Sbjct: 691 LYGRHLVLEWAR 702
>gi|148699639|gb|EDL31586.1| cold inducible RNA binding protein, isoform CRA_b [Mus musculus]
Length = 176
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|119589927|gb|EAW69521.1| cold inducible RNA binding protein, isoform CRA_b [Homo sapiens]
Length = 184
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 24 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 83
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 84 VDGRQIRVDQAGKS 97
>gi|417408518|gb|JAA50808.1| Putative rna-binding protein seb4 rrm superfamily, partial
[Desmodus rotundus]
Length = 193
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 33 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 92
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 93 VDGRQIRVDQAGKS 106
>gi|112994|sp|P10979.1|GRPA_MAIZE RecName: Full=Glycine-rich RNA-binding, abscisic acid-inducible
protein
gi|22313|emb|CAA31077.1| ABA-inducible gene protein [Zea mays]
gi|195605904|gb|ACG24782.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195617536|gb|ACG30598.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195620254|gb|ACG31957.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195637320|gb|ACG38128.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|226091|prf||1410284A abscisic acid inducible gene
Length = 157
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T+ E L +AF+ +G++ ++ +I D RS+G+G+VT S+E A+
Sbjct: 8 YRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
+MNGK LDGR I V+
Sbjct: 68 NMNGKELDGRNITVN 82
>gi|413933457|gb|AFW68008.1| responsive to abscisic acid15 [Zea mays]
Length = 159
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T+ E L +AF+ +G++ ++ +I D RS+G+G+VT S+E A+
Sbjct: 8 YRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
+MNGK LDGR I V+
Sbjct: 68 NMNGKELDGRNITVN 82
>gi|226491203|ref|NP_001151562.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195647746|gb|ACG43341.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 156
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T+ E L +AF+ +G++ ++ +I D RS+G+G+VT S+E A+
Sbjct: 8 YRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
+MNGK LDGR I V+
Sbjct: 68 NMNGKELDGRNITVN 82
>gi|195645042|gb|ACG41989.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 142
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T+ E L +AF+ +G++ ++ +I D RS+G+G+VT S+E A+
Sbjct: 8 YRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
+MNGK LDGR I V+
Sbjct: 68 NMNGKELDGRNITVN 82
>gi|194700358|gb|ACF84263.1| unknown [Zea mays]
gi|413933458|gb|AFW68009.1| responsive to abscisic acid15 [Zea mays]
Length = 140
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T+ E L +AF+ +G++ ++ +I D RS+G+G+VT S+E A+
Sbjct: 8 YRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
+MNGK LDGR I V+
Sbjct: 68 NMNGKELDGRNITVN 82
>gi|449486948|ref|XP_004157450.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 173
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 44/66 (66%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T + L +AF+++G+V EA +IMD RS+G+G+VT E+A A+ ++G+
Sbjct: 46 GLSYGTDDQRLTEAFTKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAIQALDGQD 105
Query: 124 LDGRVI 129
LDGR I
Sbjct: 106 LDGRRI 111
>gi|449439323|ref|XP_004137435.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 171
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 44/66 (66%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T + L +AF+++G+V EA +IMD RS+G+G+VT E+A A+ ++G+
Sbjct: 46 GLSYGTDDQRLTEAFTKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAIQALDGQD 105
Query: 124 LDGRVI 129
LDGR I
Sbjct: 106 LDGRRI 111
>gi|403308137|ref|XP_003944528.1| PREDICTED: cold-inducible RNA-binding protein isoform 1 [Saimiri
boliviensis boliviensis]
gi|403308139|ref|XP_003944529.1| PREDICTED: cold-inducible RNA-binding protein isoform 2 [Saimiri
boliviensis boliviensis]
Length = 172
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|350538255|ref|NP_001232562.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
gi|197128621|gb|ACH45119.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
Length = 171
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|18103931|emb|CAC83314.1| glycine rich RNA binding protein [Oryza sativa Indica Group]
Length = 194
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFS +G++ E+ II D RS+G+G+VT S+E+ + A+
Sbjct: 8 YRCFVGGLAWATDDRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIE 67
Query: 118 DMNGKLLDGRVIFVDNVRPSR 138
MNGK LDGR I V+ + R
Sbjct: 68 GMNGKELDGRNITVNEAQSRR 88
>gi|71668509|gb|AAZ38826.1| aggrecan promoter binding protein [Gallus gallus]
Length = 172
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|388583201|gb|EIM23503.1| hypothetical protein WALSEDRAFT_67167 [Wallemia sebi CBS 633.66]
Length = 89
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ST E LA AFS FGQ+++ ++ D RS+G+G+VT + + EA AL MN
Sbjct: 11 NLSWSTNDEDLARAFSPFGQISDYIVMKDRQTGRSRGFGFVTYANDREASSALESMNEVE 70
Query: 124 LDGRVIFVD 132
LDGR I V+
Sbjct: 71 LDGRRIRVN 79
>gi|296232406|ref|XP_002761576.1| PREDICTED: cold-inducible RNA-binding protein [Callithrix jacchus]
Length = 172
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|388567211|ref|ZP_10153648.1| putative RNA-binding protein rbpB [Hydrogenophaga sp. PBC]
gi|388265594|gb|EIK91147.1| putative RNA-binding protein rbpB [Hydrogenophaga sp. PBC]
Length = 97
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%)
Query: 67 FSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG 126
+S + L FS+FG V A ++ D RSKG+G+V ++E EAQ A+ +NG+ +DG
Sbjct: 12 YSVNDDSLRHNFSEFGNVASAKVMTDRDSGRSKGFGFVEMASEAEAQAAINGLNGQSVDG 71
Query: 127 RVIFVDNVRP 136
R I V+ RP
Sbjct: 72 RQIVVNVSRP 81
>gi|298528813|ref|ZP_07016217.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298512465|gb|EFI36367.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
Length = 84
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++TT+ L D+F++FG+V+ A II D RS+G+G+V E A +A+ +NGK
Sbjct: 8 NLSWNTTETQLRDSFAEFGEVSSAKIIEDRETGRSRGFGFV--EMENGADEAVEKLNGKD 65
Query: 124 LDGRVIFVDNVRPSR 138
DGR I V+ +P R
Sbjct: 66 FDGRTIKVNVAKPKR 80
>gi|357152187|ref|XP_003576037.1| PREDICTED: glycine-rich RNA-binding protein blt801-like
[Brachypodium distachyon]
Length = 102
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC +++ T + L +AF FG++ +A +I D RS+G+G+VT +TE+ Q A+
Sbjct: 4 YRCFVGGLAWVTDDQSLENAFRSFGEILDAKVIPDRETGRSRGFGFVTFTTEQAMQNAIN 63
Query: 118 DMNGKLLDGRVIFVD 132
MNGK +DGR I V+
Sbjct: 64 AMNGKDIDGRTISVN 78
>gi|294461052|gb|ADE76094.1| unknown [Picea sitchensis]
Length = 150
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 69/127 (54%), Gaps = 19/127 (14%)
Query: 39 SLHCIVR---PSSDLI---MQLVNVSFWR----CISVSFSTTKEMLADAFSQFGQVTEAT 88
+ HC+ R P+++ + + LV+ S +SF T +++L DAFS +G++ E
Sbjct: 6 AFHCLFRGITPNTNRLIGRLALVHSSGLNKKLFVGGLSFDTNEKVLRDAFSLYGEILEVR 65
Query: 89 IIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSRRYNTDASLAR 148
+I++ SKG+G+V ++E +A AL +M+G+ LDGR I R N + AR
Sbjct: 66 VIINRASGLSKGFGFVQFASETDAVNALKEMDGQSLDGRNI---------RVNFANTRAR 116
Query: 149 QPAQSPE 155
Q + P+
Sbjct: 117 QDSAPPK 123
>gi|242063480|ref|XP_002453029.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
gi|241932860|gb|EES06005.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
Length = 295
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++ T EML +AF + G V A ++ D RS+GYG+V ST+EE +A+ +NG
Sbjct: 221 NLSWTVTSEMLTEAFGRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEAISSLNGTE 280
Query: 124 LDGRVIFVD 132
L+GR I V+
Sbjct: 281 LEGREIRVN 289
>gi|148699638|gb|EDL31585.1| cold inducible RNA binding protein, isoform CRA_a [Mus musculus]
gi|149034578|gb|EDL89315.1| cold inducible RNA binding protein, isoform CRA_b [Rattus
norvegicus]
gi|149034579|gb|EDL89316.1| cold inducible RNA binding protein, isoform CRA_b [Rattus
norvegicus]
Length = 168
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
T E L +AFS FG+ ++ D K RS+G+G+V + E+AQKA+ +MNGK ++G++I
Sbjct: 203 TDEKLKEAFSAFGKTLSVRVMRD-EKGRSRGFGFVNYAHHEDAQKAVDEMNGKEMNGKII 261
Query: 130 FVDNVRPSRRYNTDASLARQ 149
+V R +R L R+
Sbjct: 262 YVG--RAQKRLERQGELKRK 279
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D FS FG + ++ D + SKGYG+V T+E A +A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ERGSKGYGFVHFETQEAANRAIETMNGMLLNDR 166
Query: 128 VIFVDNVR 135
+FV + +
Sbjct: 167 KVFVGHFK 174
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S E L FS +G +T A ++ + G+ SKG+G+V S+ EEA KA+ +MNG+++ +
Sbjct: 304 SIDDERLRKEFSPYGTITSAKVMTEAGQ--SKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 128 VIFV 131
++V
Sbjct: 362 PLYV 365
>gi|73987338|ref|XP_868602.1| PREDICTED: cold-inducible RNA-binding protein isoform 4 [Canis
lupus familiaris]
Length = 219
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 59 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 118
Query: 124 LDGRVIFVDNV 134
+DGR I VD
Sbjct: 119 VDGRQIRVDQA 129
>gi|4502847|ref|NP_001271.1| cold-inducible RNA-binding protein [Homo sapiens]
gi|197102572|ref|NP_001124692.1| cold-inducible RNA-binding protein [Pongo abelii]
gi|386782231|ref|NP_001248245.1| cold-inducible RNA-binding protein [Macaca mulatta]
gi|397465267|ref|XP_003804430.1| PREDICTED: cold-inducible RNA-binding protein [Pan paniscus]
gi|426386441|ref|XP_004059693.1| PREDICTED: cold-inducible RNA-binding protein isoform 1 [Gorilla
gorilla gorilla]
gi|5921786|sp|Q14011.1|CIRBP_HUMAN RecName: Full=Cold-inducible RNA-binding protein; AltName: Full=A18
hnRNP; AltName: Full=Glycine-rich RNA-binding protein
CIRP
gi|75070980|sp|Q5RF83.1|CIRBP_PONAB RecName: Full=Cold-inducible RNA-binding protein; AltName:
Full=Glycine-rich RNA-binding protein CIRP
gi|1060893|dbj|BAA11212.1| CIRP [Homo sapiens]
gi|2541973|gb|AAC51787.1| DNA damage-inducible RNA binding protein [Homo sapiens]
gi|2924760|gb|AAC04895.1| CIRP [Homo sapiens]
gi|12653269|gb|AAH00403.1| Cold inducible RNA binding protein [Homo sapiens]
gi|12654167|gb|AAH00901.1| Cold inducible RNA binding protein [Homo sapiens]
gi|30583259|gb|AAP35874.1| cold inducible RNA binding protein [Homo sapiens]
gi|55725420|emb|CAH89574.1| hypothetical protein [Pongo abelii]
gi|60654971|gb|AAX32049.1| cold inducible RNA binding protein [synthetic construct]
gi|67970531|dbj|BAE01608.1| unnamed protein product [Macaca fascicularis]
gi|119589926|gb|EAW69520.1| cold inducible RNA binding protein, isoform CRA_a [Homo sapiens]
gi|119589929|gb|EAW69523.1| cold inducible RNA binding protein, isoform CRA_a [Homo sapiens]
gi|157928054|gb|ABW03323.1| cold inducible RNA binding protein [synthetic construct]
gi|157928769|gb|ABW03670.1| cold inducible RNA binding protein [synthetic construct]
gi|197692151|dbj|BAG70039.1| cold inducible RNA binding protein [Homo sapiens]
gi|197692397|dbj|BAG70162.1| cold inducible RNA binding protein [Homo sapiens]
gi|261860266|dbj|BAI46655.1| cold inducible RNA binding protein [synthetic construct]
gi|343958578|dbj|BAK63144.1| cold-inducible RNA-binding protein [Pan troglodytes]
gi|383415637|gb|AFH31032.1| cold-inducible RNA-binding protein [Macaca mulatta]
gi|384940732|gb|AFI33971.1| cold-inducible RNA-binding protein [Macaca mulatta]
gi|410224774|gb|JAA09606.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410260066|gb|JAA17999.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410289136|gb|JAA23168.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410343217|gb|JAA40555.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410343219|gb|JAA40556.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410343223|gb|JAA40558.1| cold inducible RNA binding protein [Pan troglodytes]
Length = 172
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|426229493|ref|XP_004008825.1| PREDICTED: cold-inducible RNA-binding protein [Ovis aries]
Length = 171
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|115454539|ref|NP_001050870.1| Os03g0670700 [Oryza sativa Japonica Group]
gi|108710321|gb|ABF98116.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
gi|113549341|dbj|BAF12784.1| Os03g0670700 [Oryza sativa Japonica Group]
Length = 196
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC ++++T L AFS +G++ ++ II D RS+G+G+VT S+E+ + A+
Sbjct: 9 RCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEG 68
Query: 119 MNGKLLDGRVIFVDNVRPSRR 139
MNGK LDGR I V+ + SRR
Sbjct: 69 MNGKELDGRNITVNEAQ-SRR 88
>gi|406917506|gb|EKD56278.1| RNA-binding protein [uncultured bacterium]
Length = 89
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S T + L + F+ G+V +A +I D RSKG+G+VT + A+KA+ D +GK
Sbjct: 11 NLPYSATSDSLKELFAGSGEVVDAVVISDKFSGRSKGFGFVTMKDDAAAEKAIKDTDGKE 70
Query: 124 LDGRVIFVDNVRPSRRYN 141
+DGR I V+ RP R N
Sbjct: 71 VDGRNIKVNIARPMRENN 88
>gi|297739973|emb|CBI30155.3| unnamed protein product [Vitis vinifera]
Length = 190
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 49/73 (67%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+ ++T++ L DAFS++G++ E+ ++M+ R +G+G++T + + A+ +M+G+
Sbjct: 13 GLGWNTSERHLEDAFSRYGKILESLVMMERDTGRPRGFGFITFADHRAMEDAIREMHGRE 72
Query: 124 LDGRVIFVDNVRP 136
LDGRVI V+ +P
Sbjct: 73 LDGRVISVNKAQP 85
>gi|209154564|gb|ACI33514.1| RNA-binding protein 39 [Salmo salar]
Length = 525
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T+EML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 255 SLHFNITEEMLRGIFEPFGKIESIQLMMDSETGRSKGYGFITFSDTECAKKALDQLNGFE 314
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 315 LAGRPMKVGHV----TERTDASTA 334
>gi|348550387|ref|XP_003461013.1| PREDICTED: LOW QUALITY PROTEIN: cold-inducible RNA-binding
protein-like [Cavia porcellus]
Length = 173
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 46/69 (66%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L + FS++GQ+ E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEEVFSKYGQIAEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVD 132
+DGR I VD
Sbjct: 72 VDGRQIRVD 80
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S T +ML D F+ G +T A ++ D RS+G+G+V ST EE+ +A+ +MNGKL+ +
Sbjct: 337 SVTDDMLRDEFAVMGTITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVNEMNGKLIANK 396
Query: 128 VIFV 131
IFV
Sbjct: 397 PIFV 400
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L D FS FG + ++ D S GYGYV T E A A+ ++G L+DG+ + V +
Sbjct: 143 LYDTFSLFGNILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKLDGMLIDGQEVQVGH 202
Query: 134 -VRPSRRYNTDA 144
+R + R + D+
Sbjct: 203 FMRRNDRPDIDS 214
>gi|449507141|ref|XP_004162944.1| PREDICTED: 40S ribosomal protein S19, mitochondrial-like [Cucumis
sativus]
Length = 175
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 41/58 (70%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGK 122
+SF TT+E L +AF FGQ+ E ++MD NR +G+ ++ ++EEE+QKA+ M+GK
Sbjct: 96 LSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 153
>gi|212722336|ref|NP_001132163.1| uncharacterized protein LOC100193584 [Zea mays]
gi|194693616|gb|ACF80892.1| unknown [Zea mays]
Length = 234
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 48/71 (67%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
++++T+ E L +AF+ +G++ ++ +I D RS+G+G+VT S+E A+ +MNGK L
Sbjct: 90 LAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKEL 149
Query: 125 DGRVIFVDNVR 135
DGR I V+ +
Sbjct: 150 DGRNITVNQAQ 160
>gi|168038795|ref|XP_001771885.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676836|gb|EDQ63314.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 157
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 7/82 (8%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++++T + L DAF FG VT+ II+D RS+G+G+V ++ +EA+ AL +M+G+
Sbjct: 51 GLAWATDENTLRDAFGSFGTVTDVKIILDRDTGRSRGFGFVNFTSPQEAEVALQEMDGRE 110
Query: 124 LDGRVIFVDNVRPSRRYNTDAS 145
L GR I VD Y TD S
Sbjct: 111 LAGRQIRVD-------YATDKS 125
>gi|405963791|gb|EKC29337.1| RNA-binding protein 39 [Crassostrea gigas]
Length = 557
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T+EML F FG++ + +I D NRS+GYG++T E+A+KAL +NG
Sbjct: 266 SLHFNITEEMLRGIFEPFGKIDDIKLIRDHETNRSQGYGFITFHDSEDAKKALEQLNGFE 325
Query: 124 LDGRVIFVDNV 134
L GR + V +V
Sbjct: 326 LAGRPMKVGHV 336
>gi|226469236|emb|CAX70097.1| RNA-binding protein 39 [Schistosoma japonicum]
Length = 463
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ ++ T+EML F FG++ + +I D NRS+GYG+VT ++A+KAL +NG
Sbjct: 209 SLHYNITEEMLKGIFEPFGKIEDIKLIKDPATNRSQGYGFVTYVNSDDAKKALDQLNGFE 268
Query: 124 LDGRVIFVDNVRPSRRY 140
L GR + V++V Y
Sbjct: 269 LAGRPMKVNHVTERSEY 285
>gi|406907930|gb|EKD48603.1| RNA-binding protein [uncultured bacterium]
Length = 100
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S T++ L + F QFG V+ +++D RSKG+ +V S +EE + A+ +NG
Sbjct: 7 NLPYSITEDSLRELFEQFGDVSSTKVVVDQISGRSKGFAFVDMSNDEEGEAAIEKLNGHE 66
Query: 124 LDGRVIFVDNVRP 136
LDGR I V+ +P
Sbjct: 67 LDGRTIVVNKAKP 79
>gi|395831301|ref|XP_003788741.1| PREDICTED: cold-inducible RNA-binding protein [Otolemur garnettii]
Length = 172
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|149240785|ref|XP_001526223.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450346|gb|EDK44602.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 601
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S E L AF++FG + +A ++ D+ +RS+GYG+VT +E+A+ AL MNG+ L
Sbjct: 200 LSSEVNDEALKKAFTKFGSLKQAHVMWDMQTSRSRGYGFVTFGKQEDAENALQSMNGEWL 259
Query: 125 DGRVI 129
GR I
Sbjct: 260 GGRAI 264
>gi|449439247|ref|XP_004137398.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like-B-like
[Cucumis sativus]
Length = 170
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 41/58 (70%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGK 122
+SF TT+E L +AF FGQ+ E ++MD NR +G+ ++ ++EEE+QKA+ M+GK
Sbjct: 96 LSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 153
>gi|426386443|ref|XP_004059694.1| PREDICTED: cold-inducible RNA-binding protein isoform 2 [Gorilla
gorilla gorilla]
gi|426386445|ref|XP_004059695.1| PREDICTED: cold-inducible RNA-binding protein isoform 3 [Gorilla
gorilla gorilla]
Length = 168
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|356508388|ref|XP_003522939.1| PREDICTED: uncharacterized protein LOC100806292 [Glycine max]
Length = 185
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T + L AFS +G++ E+ +I+D RS+G+G+VT ++E+ + A+
Sbjct: 8 YRCFVGGLAWATDSDALEKAFSHYGEIVESKVIIDRETGRSRGFGFVTFASEQAMKDAIE 67
Query: 118 DMNGKLLDGRVIFVDNVRP 136
MNG+ LDGR I V+ +
Sbjct: 68 GMNGQNLDGRSITVNEAQS 86
>gi|402903547|ref|XP_003914625.1| PREDICTED: cold-inducible RNA-binding protein [Papio anubis]
Length = 199
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 39 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 98
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 99 VDGRQIRVDQAGKS 112
>gi|380012525|ref|XP_003690330.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 39-like [Apis
florea]
Length = 506
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 251 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPXTGRSKGYGFLTFRNADDAKKALEQLNGFE 310
Query: 124 LDGRVIFVDNV 134
L GR + V NV
Sbjct: 311 LAGRPMKVGNV 321
>gi|161408091|dbj|BAF94149.1| cold-inducible RNA binding protein [Alligator mississippiensis]
Length = 165
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|20975276|dbj|BAB92955.1| cold inducible RNA-binding protein alpha [Hyla japonica]
Length = 162
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L F ++GQ++E ++ D RS+G+G+VT E+A+ A+ MNGK
Sbjct: 13 GLSFDTEEQSLEQVFGKYGQISEVVVVKDRETKRSRGFGFVTFENPEDAKDAMEAMNGKS 72
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 73 VDGRQIRVDQAGKS 86
>gi|149034582|gb|EDL89319.1| cold inducible RNA binding protein, isoform CRA_d [Rattus
norvegicus]
gi|149034583|gb|EDL89320.1| cold inducible RNA binding protein, isoform CRA_d [Rattus
norvegicus]
Length = 176
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|294884882|gb|ADF47449.1| TIA1-like protein [Dugesia japonica]
Length = 383
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
+ L + FS FG+VTE II D+ + KGYG+V +T+EEA++AL MNGK L R I
Sbjct: 127 QFLRERFSLFGRVTECKIIKDMHTQKPKGYGFVAYATKEEAEEALNKMNGKFLGTRQI 184
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 71 KEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGK 122
+E+L ++F +FG + E I + KGY +V + E A +A++ M+GK
Sbjct: 231 EELLRESFKEFGDILEVRIF------KEKGYAFVRFDSHEGATQAIIRMHGK 276
>gi|387018172|gb|AFJ51204.1| Cold-inducible RNA-binding protein-like [Crotalus adamanteus]
Length = 172
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|326918654|ref|XP_003205603.1| PREDICTED: LOW QUALITY PROTEIN: cold-inducible RNA-binding
protein-like [Meleagris gallopavo]
Length = 170
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|406929710|gb|EKD65230.1| RNA-binding protein [uncultured bacterium]
Length = 95
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 43/72 (59%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S+ TT E L FSQ G+V A I+D + KG+G+V +T EEAQKA+ +N L
Sbjct: 10 LSYGTTDEQLEQHFSQAGKVISAKAIVDRYSGQGKGFGFVEMATAEEAQKAIQQLNNSNL 69
Query: 125 DGRVIFVDNVRP 136
+ R I V+ RP
Sbjct: 70 NDRSIVVNEARP 81
>gi|351699548|gb|EHB02467.1| Cold-inducible RNA-binding protein, partial [Heterocephalus glaber]
Length = 167
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|410340767|gb|JAA39330.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340769|gb|JAA39331.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340771|gb|JAA39332.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340773|gb|JAA39333.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340775|gb|JAA39334.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340777|gb|JAA39335.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
Length = 157
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFPIPEHASVAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|78185978|ref|YP_374021.1| RNA recognition motif-containing protein [Chlorobium luteolum DSM
273]
gi|78165880|gb|ABB22978.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
luteolum DSM 273]
Length = 99
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 43/66 (65%)
Query: 67 FSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG 126
+S +++ L DAFSQFGQV A IIMD RSKG+G+V S++E + A+ MN + G
Sbjct: 19 YSVSEDDLRDAFSQFGQVDSANIIMDKFSGRSKGFGFVDMSSDEAGRAAIEAMNEQEFKG 78
Query: 127 RVIFVD 132
R I V+
Sbjct: 79 RTIKVN 84
>gi|223973531|gb|ACN30953.1| unknown [Zea mays]
Length = 184
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD- 132
L +AFS FG+VTEA +I D RS+G+G+V S + A++A+ M+GK +DGR + V+
Sbjct: 53 LREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNM 112
Query: 133 -NVRPSR 138
N RP R
Sbjct: 113 ANERPLR 119
>gi|301776322|ref|XP_002923559.1| PREDICTED: cold-inducible RNA-binding protein-like [Ailuropoda
melanoleuca]
Length = 172
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|383864354|ref|XP_003707644.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Megachile
rotundata]
Length = 507
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 252 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALEQLNGFE 311
Query: 124 LDGRVIFVDNV 134
L GR + V NV
Sbjct: 312 LAGRPMKVGNV 322
>gi|346469013|gb|AEO34351.1| hypothetical protein [Amblyomma maculatum]
Length = 139
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%)
Query: 69 TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
TT E L +AF++FG+V A ++ D SKG+G+V +T E+A + + M+GK LDG V
Sbjct: 47 TTTEGLREAFAKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAEGIKGMDGKFLDGWV 106
Query: 129 IFVD 132
IF +
Sbjct: 107 IFAE 110
>gi|302496006|ref|XP_003010008.1| hypothetical protein ARB_03747 [Arthroderma benhamiae CBS 112371]
gi|291173542|gb|EFE29368.1| hypothetical protein ARB_03747 [Arthroderma benhamiae CBS 112371]
Length = 224
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 63 ISVSFSTTKEMLADAFSQFGQVTEATI------IMDIGKNRSKGYGYVTSSTEEEAQKAL 116
+ +++ TT + L + FS+FG + EA I + D NRS+G+G+V S++ EA AL
Sbjct: 78 LGLAWHTTDDTLREGFSKFGTIEEALISHVQIVVKDRDTNRSRGFGFVRFSSDSEADAAL 137
Query: 117 VDMNGKLLDGRVIFVD 132
MN + DGRVI VD
Sbjct: 138 TAMNNQEFDGRVIRVD 153
>gi|258568356|ref|XP_002584922.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237906368|gb|EEP80769.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 745
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ S T E L + FSQ + AT + D + KGYG+VT + E+AQ+AL ++NG +
Sbjct: 52 SLPASATTESLTEYFSQSYPIKHATAVADPQTKQCKGYGFVTFTDVEDAQRALEELNGSI 111
Query: 124 LDGRVIFVDNVRPSRR 139
DGR I ++ P RR
Sbjct: 112 FDGRKIVIEVAEPRRR 127
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E LA F +G+V A I R G+G++ ++ A+KA+ +NGK LDGR + V
Sbjct: 174 EQLAVLFRSYGKVKHADIPRK--GTRHSGFGFIVMRGKKNAEKAIEGVNGKELDGRTLAV 231
Query: 132 D 132
D
Sbjct: 232 D 232
>gi|350410161|ref|XP_003488967.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Bombus impatiens]
Length = 508
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 253 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALEQLNGFE 312
Query: 124 LDGRVIFVDNV 134
L GR + V NV
Sbjct: 313 LAGRPMKVGNV 323
>gi|340718900|ref|XP_003397900.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Bombus
terrestris]
Length = 508
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 253 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALEQLNGFE 312
Query: 124 LDGRVIFVDNV 134
L GR + V NV
Sbjct: 313 LAGRPMKVGNV 323
>gi|334326698|ref|XP_001365067.2| PREDICTED: cold-inducible RNA-binding protein-like [Monodelphis
domestica]
Length = 172
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ+ E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQIAEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|281341352|gb|EFB16936.1| hypothetical protein PANDA_012739 [Ailuropoda melanoleuca]
Length = 167
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|326515712|dbj|BAK07102.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 104
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T + L +AFS++G V ++ II D RS+G+G+VT +++E ++A+
Sbjct: 6 YRCFVGGLAWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIE 65
Query: 118 DMNGKLLDGRVIFVDNVRPSR 138
MNG+ LDGR I V+ + R
Sbjct: 66 AMNGQDLDGRNITVNEAQSRR 86
>gi|302791061|ref|XP_002977297.1| hypothetical protein SELMODRAFT_107195 [Selaginella moellendorffii]
gi|300154667|gb|EFJ21301.1| hypothetical protein SELMODRAFT_107195 [Selaginella moellendorffii]
Length = 180
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC +S+STT L AF +G + EA ++ D NRS+G+G+VT EE + A+
Sbjct: 6 RCFIGGLSWSTTDRSLETAFRPYGSIIEAKVVFDRETNRSRGFGFVTFEDEESMENAIRK 65
Query: 119 MNGKLLDGRVIFVDNVRPSR 138
M+ + L+GR I V P R
Sbjct: 66 MHNQELEGRSITVSKAEPPR 85
>gi|115441831|ref|NP_001045195.1| Os01g0916600 [Oryza sativa Japonica Group]
gi|2624328|emb|CAA05729.1| OsGRP2 [Oryza sativa Japonica Group]
gi|19386753|dbj|BAB86134.1| OsGRP2 [Oryza sativa Japonica Group]
gi|20805007|dbj|BAB92683.1| OsGRP2 [Oryza sativa Japonica Group]
gi|113534726|dbj|BAF07109.1| Os01g0916600 [Oryza sativa Japonica Group]
gi|125528847|gb|EAY76961.1| hypothetical protein OsI_04919 [Oryza sativa Indica Group]
gi|125573102|gb|EAZ14617.1| hypothetical protein OsJ_04542 [Oryza sativa Japonica Group]
gi|215765299|dbj|BAG86996.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768370|dbj|BAH00599.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 150
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S++T + L +AF+ FG VTEA +I D RS+G+G+V+ + ++A+ A+ M+GK
Sbjct: 43 GLSWNTNDDSLKEAFTSFGDVTEARVINDRESGRSRGFGFVSFANGDDAKSAMDAMDGKE 102
Query: 124 LDGRVIFVD--NVRP 136
L+GR I V+ N RP
Sbjct: 103 LEGRSIRVNFANERP 117
>gi|328952775|ref|YP_004370109.1| RNP-1 like RNA-binding protein [Desulfobacca acetoxidans DSM 11109]
gi|328453099|gb|AEB08928.1| RNP-1 like RNA-binding protein [Desulfobacca acetoxidans DSM 11109]
Length = 97
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF T+E L FS+ G VT A II D + +G+G+V T+ E +KA+ +NG+
Sbjct: 9 NLSFEMTEEQLGTLFSEAGPVTSAKIITDRQTGQPRGFGFVEMETKSEGRKAISMLNGRT 68
Query: 124 LDGRVIFVDNVRPSRR 139
+DGR + V+ +P ++
Sbjct: 69 VDGRPLAVNEAKPQQK 84
>gi|297812083|ref|XP_002873925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319762|gb|EFH50184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 167
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S ++ L FS+FGQVT II++ +S GYGYV + +E+AQ A+ MNGK DGR
Sbjct: 85 SVSEGRLKKVFSEFGQVTNVKIIINERTRQSLGYGYVWFNRKEDAQLAVEAMNGKFFDGR 144
Query: 128 VIFVDNVRP--SRR 139
I V +P SRR
Sbjct: 145 FILVKFGQPGLSRR 158
>gi|383864352|ref|XP_003707643.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Megachile
rotundata]
Length = 530
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 275 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALEQLNGFE 334
Query: 124 LDGRVIFVDNV 134
L GR + V NV
Sbjct: 335 LAGRPMKVGNV 345
>gi|73987334|ref|XP_868600.1| PREDICTED: cold-inducible RNA-binding protein isoform 2 [Canis
lupus familiaris]
Length = 185
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|212550891|ref|YP_002309208.1| RNA-binding protein RbpA [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212549129|dbj|BAG83797.1| putative RNA-binding protein RbpA [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 98
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF + L + F +G V+ A +I+D +RSKGYG+V +EEA+KA+ ++NG
Sbjct: 7 GLSFRLNDDDLKNLFESYGTVSSARVIIDRQTSRSKGYGFVEMEDDEEARKAIAELNGSE 66
Query: 124 LDGRVIFVDNVRP 136
D R I V RP
Sbjct: 67 FDERTISVSEARP 79
>gi|256082942|ref|XP_002577710.1| splicing factor [Schistosoma mansoni]
gi|360043601|emb|CCD81147.1| putative splicing factor [Schistosoma mansoni]
Length = 327
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ ++ T+EML F FG++ + +I D NRS+GYG+VT ++A+KAL +NG
Sbjct: 73 SLHYNITEEMLKGIFEPFGKIEDIKLIKDPTTNRSQGYGFVTYVNSDDAKKALDQLNGFE 132
Query: 124 LDGRVIFVDNVRPSRRYNTDASL 146
L GR + V++V Y ++L
Sbjct: 133 LAGRPMKVNHVTERSEYACLSAL 155
>gi|291245052|ref|XP_002742405.1| PREDICTED: MGC81970 protein-like isoform 2 [Saccoglossus
kowalevskii]
Length = 444
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T+EML F FG++ ++ D RSKGYG++T E+A+KAL +NG
Sbjct: 150 SLHFNITEEMLRGIFEPFGKIDNIQLMKDNETGRSKGYGFITFHDAEDAKKALEQLNGFE 209
Query: 124 LDGRVIFVDNVRPSRRYNTDASL 146
L GR + V +V TDAS
Sbjct: 210 LAGRPMKVGHVTERSDAATDASF 232
>gi|90704785|dbj|BAE92287.1| putative glycine-rich RNA binding protein [Cryptomeria japonica]
Length = 181
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 52 MQLVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTE 109
M +V F RC +S+ST L DAF+ FG+V ++ ++ D RS+G+G+VT E
Sbjct: 1 MASADVEF-RCFVGGLSWSTDDRSLKDAFTAFGEVMDSKVVSDRETGRSRGFGFVTFMDE 59
Query: 110 EEAQKALVDMNGKLLDGRVIFVD 132
+ + A+ MNG+ LDGR I V+
Sbjct: 60 QSMRDAIEGMNGRDLDGRNITVN 82
>gi|328781105|ref|XP_624668.3| PREDICTED: RNA-binding protein 39-like [Apis mellifera]
Length = 506
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 251 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALEQLNGFE 310
Query: 124 LDGRVIFVDNV 134
L GR + V NV
Sbjct: 311 LAGRPMKVGNV 321
>gi|395513325|ref|XP_003760877.1| PREDICTED: cold-inducible RNA-binding protein [Sarcophilus
harrisii]
Length = 172
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ+ E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQIAEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|350410158|ref|XP_003488966.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Bombus impatiens]
Length = 532
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 277 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALEQLNGFE 336
Query: 124 LDGRVIFVDNV 134
L GR + V NV
Sbjct: 337 LAGRPMKVGNV 347
>gi|358342556|dbj|GAA49996.1| RNA-binding protein 39 [Clonorchis sinensis]
Length = 730
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ ++ T+EML F FG++ + +I D RS+GYG+VT + ++A+KAL +NG
Sbjct: 184 SLHYNITEEMLKGIFEPFGKIDDIKLIKDPATGRSQGYGFVTYANSDDAKKALDQLNGFE 243
Query: 124 LDGRVIFVDNV 134
L GR + V++V
Sbjct: 244 LAGRPMKVNHV 254
Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
L D F+ G++ + +IMD RSKG YV E AQ AL +LL
Sbjct: 95 LEDFFTSVGKIRDVRLIMDNKTKRSKGIAYVEFREVESAQLALGLTGTRLL 145
>gi|195434196|ref|XP_002065089.1| GK15272 [Drosophila willistoni]
gi|194161174|gb|EDW76075.1| GK15272 [Drosophila willistoni]
Length = 612
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 359 SLHFNITEDMLRGIFEPFGKIDVIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFE 418
Query: 124 LDGRVIFVDNV 134
L GR + V NV
Sbjct: 419 LAGRPMKVGNV 429
>gi|57899926|dbj|BAD87838.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 203
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T + L DAFSQ G + + +I +SKGYG+V ++E+EA AL M G++
Sbjct: 130 GLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKMGGEV 189
Query: 124 LDGRVIFVD 132
+DGR I V
Sbjct: 190 IDGRNIRVH 198
>gi|424843086|ref|ZP_18267711.1| RRM domain-containing RNA-binding protein [Saprospira grandis DSM
2844]
gi|395321284|gb|EJF54205.1| RRM domain-containing RNA-binding protein [Saprospira grandis DSM
2844]
Length = 126
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
++F TT E L + F+QFG V A IIMD +RSKG+G+V EE+ Q A+ +N
Sbjct: 8 LNFRTTSEELEELFAQFGTVDSAKIIMDRETDRSKGFGFVEMPDEEDGQAAIDALNETEF 67
Query: 125 DGRVIFVDNVRP 136
R I V RP
Sbjct: 68 HERTIVVKKARP 79
>gi|379728946|ref|YP_005321142.1| rnp-1 like RNA-binding protein [Saprospira grandis str. Lewin]
gi|378574557|gb|AFC23558.1| rnp-1 like RNA-binding protein [Saprospira grandis str. Lewin]
Length = 122
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
++F TT E L + F+QFG V A IIMD +RSKG+G+V EE+ Q A+ +N
Sbjct: 8 LNFRTTSEELEELFAQFGTVDSAKIIMDRETDRSKGFGFVEMPDEEDGQAAIDALNETEF 67
Query: 125 DGRVIFVDNVRP 136
R I V RP
Sbjct: 68 HERTIVVKKARP 79
>gi|195397963|ref|XP_002057597.1| GJ18017 [Drosophila virilis]
gi|194141251|gb|EDW57670.1| GJ18017 [Drosophila virilis]
Length = 599
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 346 SLHFNITEDMLRGIFEPFGKIDVIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFE 405
Query: 124 LDGRVIFVDNV 134
L GR + V NV
Sbjct: 406 LAGRPMKVGNV 416
>gi|195050249|ref|XP_001992854.1| GH13506 [Drosophila grimshawi]
gi|193899913|gb|EDV98779.1| GH13506 [Drosophila grimshawi]
Length = 628
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 375 SLHFNITEDMLRGIFEPFGKIDVIQLIMDNETGRSKGYGFITYHNADDAKKALEQLNGFE 434
Query: 124 LDGRVIFVDNV 134
L GR + V NV
Sbjct: 435 LAGRPMKVGNV 445
>gi|357473251|ref|XP_003606910.1| Glycine-rich RNA binding protein [Medicago truncatula]
gi|355507965|gb|AES89107.1| Glycine-rich RNA binding protein [Medicago truncatula]
Length = 161
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T E L AFSQ+G++ ++ II D RS+G+G+VT + E+ A+
Sbjct: 6 YRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIE 65
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 66 AMNGQDLDGRNITVN 80
>gi|189345649|ref|YP_001942178.1| RNP-1 like RNA-binding protein [Chlorobium limicola DSM 245]
gi|189339796|gb|ACD89199.1| RNP-1 like RNA-binding protein [Chlorobium limicola DSM 245]
Length = 90
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 43/68 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S T++ L D FSQFGQV A II D RSKG+G+V + EA++A+ MN K
Sbjct: 7 NLPYSVTEDDLRDVFSQFGQVDSANIITDKFSGRSKGFGFVDMPIDGEAREAIESMNDKD 66
Query: 124 LDGRVIFV 131
L GR I V
Sbjct: 67 LKGRTIKV 74
>gi|340718898|ref|XP_003397899.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Bombus
terrestris]
Length = 520
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 265 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALEQLNGFE 324
Query: 124 LDGRVIFVDNV 134
L GR + V NV
Sbjct: 325 LAGRPMKVGNV 335
>gi|307195359|gb|EFN77277.1| RNA-binding protein 39 [Harpegnathos saltator]
Length = 370
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 115 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALEQLNGFE 174
Query: 124 LDGRVIFVDNV 134
L GR + V NV
Sbjct: 175 LAGRPMKVGNV 185
>gi|284022113|sp|Q925G0.2|RBM3_RAT RecName: Full=Putative RNA-binding protein 3; AltName:
Full=RNA-binding motif protein 3
Length = 155
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A + MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|409050086|gb|EKM59563.1| hypothetical protein PHACADRAFT_250155 [Phanerochaete carnosa
HHB-10118-sp]
Length = 277
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%)
Query: 45 RPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYV 104
RP+ I S +S T + L + FS+FG+V + I+ D +RS+G+G++
Sbjct: 63 RPAQAPIQAPNPSSVLGVFGLSIRTVERDLDEEFSRFGRVEKVVIVYDQRSDRSRGFGFI 122
Query: 105 TSSTEEEAQKALVDMNGKLLDGRVIFVD 132
T ST EEA + + ++NG L+GR I VD
Sbjct: 123 TMSTVEEASRCIKELNGVELNGRRIRVD 150
>gi|355704773|gb|EHH30698.1| RNA-binding motif protein 3 [Macaca mulatta]
Length = 157
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I V +V S R
Sbjct: 72 LDGRQIRVAHVGKSAR 87
>gi|260221788|emb|CBA30701.1| Glycine-rich RNA-binding protein GRP1A [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 149
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S E L AFSQ G V+ A ++M+ RSKG+G+V ++ EAQ A+ MNG+
Sbjct: 15 NLPYSFRDEDLQQAFSQHGSVSSAKVMMERDTGRSKGFGFVEMGSDAEAQTAISAMNGQQ 74
Query: 124 LDGRVIFVDNVRP 136
GR + V+ RP
Sbjct: 75 FGGRGLVVNEARP 87
>gi|344307815|ref|XP_003422574.1| PREDICTED: LOW QUALITY PROTEIN: cold-inducible RNA-binding
protein-like [Loxodonta africana]
Length = 169
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|392593259|gb|EIW82584.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 116
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 48/73 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++TT + L AFS FG V ++ ++ D RS+G+G+VT S+ +EA+ A+ +N +
Sbjct: 10 NLSWNTTDDTLRQAFSTFGNVVDSVVMRDRDTGRSRGFGFVTYSSTQEAESAISGLNDQD 69
Query: 124 LDGRVIFVDNVRP 136
LDGR I V+ P
Sbjct: 70 LDGRRIKVNIANP 82
>gi|387861097|gb|AFK08578.1| glycine-rich RNA binding protein 2c [Camelina sativa]
gi|387861103|gb|AFK08581.1| glycine-rich RNA binding protein 2c [Camelina sativa]
Length = 158
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T L DAF+ FG+V +A +I+D R +G+G+V S E A A+ +M+GK
Sbjct: 42 GLSWGTDDASLRDAFAHFGEVVDAKVIVDRETGRPRGFGFVNFSDETAASAAISEMDGKD 101
Query: 124 LDGRVIFVD--NVRPS 137
L+GR I V+ N RPS
Sbjct: 102 LNGRNIRVNPANDRPS 117
>gi|302780311|ref|XP_002971930.1| hypothetical protein SELMODRAFT_172546 [Selaginella moellendorffii]
gi|300160229|gb|EFJ26847.1| hypothetical protein SELMODRAFT_172546 [Selaginella moellendorffii]
Length = 173
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC +S+STT L AF +G + EA ++ D NRS+G+G+VT EE + A+
Sbjct: 6 RCFIGGLSWSTTDRSLETAFRPYGSIIEAKVVFDRETNRSRGFGFVTFEDEESMENAIRK 65
Query: 119 MNGKLLDGRVIFVDNVRPSR 138
M+ + L+GR I V P R
Sbjct: 66 MHNQELEGRSITVSKAEPPR 85
>gi|351725469|ref|NP_001238373.1| glycine-rich RNA-binding protein [Glycine max]
gi|5726567|gb|AAD48471.1|AF169205_1 glycine-rich RNA-binding protein [Glycine max]
Length = 160
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFSQ+G++ E II D RS+G+G+VT ++E+ + A+
Sbjct: 8 YRCFVGGLAWATDDHALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQSMKDAIG 67
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 68 AMNGQNLDGRNITVN 82
>gi|218193515|gb|EEC75942.1| hypothetical protein OsI_13038 [Oryza sativa Indica Group]
Length = 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T + LADAF +FG+V +A I+++ R +G+G+VT S E A+ +M+ +
Sbjct: 13 GLSFHTDERKLADAFRRFGKVVDAQIMLERHTQRHRGFGFVTFSDPEAVDSAIKEMHCQE 72
Query: 124 LDGRVIFVDNVRPSRRYNTD 143
LDGR I V+ P + NTD
Sbjct: 73 LDGRTISVNKAEP--KMNTD 90
>gi|329960883|ref|ZP_08299162.1| hypothetical protein HMPREF9446_00723 [Bacteroides fluxus YIT
12057]
gi|328532169|gb|EGF58973.1| hypothetical protein HMPREF9446_00723 [Bacteroides fluxus YIT
12057]
Length = 101
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++FSTT L D FS++G+V+ A +I D RS+G+G+V S + AQKA+ ++NG
Sbjct: 7 GLNFSTTDADLNDLFSEYGEVSSARVITDRETGRSRGFGFVEMSDDTAAQKAIDELNGAE 66
Query: 124 LDGRVIFVDNVRP 136
D + I V+ RP
Sbjct: 67 YDQKTISVNVARP 79
>gi|223938363|ref|ZP_03630257.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223892932|gb|EEF59399.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 127
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ F+ T+ L D F+Q G VT +IMD R +G+G+VT T+E AQ A+ +NG
Sbjct: 9 NLPFTATENELQDMFAQHGPVTSVDLIMDKFSGRPRGFGFVTMETQEGAQAAVQALNGTD 68
Query: 124 LDGRVIFVDNVRP 136
GR + V+ RP
Sbjct: 69 FGGRPLTVNEARP 81
>gi|20257693|gb|AAM16012.1| glycine-rich RNA binding protein [Zea mays]
Length = 153
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT S + + A+
Sbjct: 15 YRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSXXDAMRSAIE 74
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 75 GMNGKELDGRNITVN 89
>gi|1778374|gb|AAB71417.1| glycine-rich RNA-binding protein PsGRBP [Pisum sativum]
gi|206586422|gb|ACI15745.1| glycine-rich RNA-binding protein [Pisum sativum]
Length = 146
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S+ + L DAF+ +G+V EA +I D RS+G+G+V +++E A AL M+G+ L
Sbjct: 43 LSYGVDDQSLKDAFASYGEVVEARVITDRDTGRSRGFGFVNFTSDESATSALSAMDGQDL 102
Query: 125 DGRVIFVD--NVRPS 137
+GR I V N RPS
Sbjct: 103 NGRNIRVSYANDRPS 117
>gi|30682622|ref|NP_849377.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
gi|332657934|gb|AEE83334.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
Length = 153
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T L DAF+ FG V +A +I+D RS+G+G+V + E A A+ +M+GK
Sbjct: 41 GLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE 100
Query: 124 LDGRVIFVD--NVRPS 137
L+GR I V+ N RPS
Sbjct: 101 LNGRHIRVNPANDRPS 116
>gi|15236359|ref|NP_193121.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
gi|25090505|sp|Q9SVM8.1|GRP2_ARATH RecName: Full=Glycine-rich RNA-binding protein 2, mitochondrial;
Short=AtGRP2; Flags: Precursor
gi|4455314|emb|CAB36849.1| glycine-rich RNA-binding protein AtGRP2-like [Arabidopsis thaliana]
gi|7268089|emb|CAB78427.1| glycine-rich RNA-binding protein AtGRP2-like [Arabidopsis thaliana]
gi|18252853|gb|AAL62353.1| glycine-rich RNA-binding protein AtGRP2 - like [Arabidopsis
thaliana]
gi|21553749|gb|AAM62842.1| glycine-rich RNA-binding protein AtGRP2-like [Arabidopsis thaliana]
gi|25084267|gb|AAN72208.1| glycine-rich RNA-binding protein AtGRP2 - like [Arabidopsis
thaliana]
gi|332657933|gb|AEE83333.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
Length = 158
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T L DAF+ FG V +A +I+D RS+G+G+V + E A A+ +M+GK
Sbjct: 41 GLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE 100
Query: 124 LDGRVIFVD--NVRPS 137
L+GR I V+ N RPS
Sbjct: 101 LNGRHIRVNPANDRPS 116
>gi|410949903|ref|XP_003981656.1| PREDICTED: cold-inducible RNA-binding protein [Felis catus]
Length = 172
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ+ E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQIAEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|145333039|ref|NP_001078385.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
gi|332657935|gb|AEE83335.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
Length = 144
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T L DAF+ FG V +A +I+D RS+G+G+V + E A A+ +M+GK
Sbjct: 41 GLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE 100
Query: 124 LDGRVIFVD--NVRPS 137
L+GR I V+ N RPS
Sbjct: 101 LNGRHIRVNPANDRPS 116
>gi|46115998|ref|XP_384017.1| hypothetical protein FG03841.1 [Gibberella zeae PH-1]
Length = 1163
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ ++TT + L +AF +GQ+ ++ ++ D RS+G+G+VT + +EA+ A++ +N +
Sbjct: 9 NLGWNTTDDSLRNAFQDYGQILDSIVMRDRDTGRSRGFGFVTFGSSQEAETAIISLNEQE 68
Query: 124 LDGRVIFVD--NVRP 136
LDGR I V+ N RP
Sbjct: 69 LDGRRIKVNLANARP 83
>gi|291245050|ref|XP_002742404.1| PREDICTED: MGC81970 protein-like isoform 1 [Saccoglossus
kowalevskii]
Length = 556
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T+EML F FG++ ++ D RSKGYG++T E+A+KAL +NG
Sbjct: 262 SLHFNITEEMLRGIFEPFGKIDNIQLMKDNETGRSKGYGFITFHDAEDAKKALEQLNGFE 321
Query: 124 LDGRVIFVDNVRPSRRYNTDASL 146
L GR + V +V TDAS
Sbjct: 322 LAGRPMKVGHVTERSDAATDASF 344
>gi|218193471|gb|EEC75898.1| hypothetical protein OsI_12955 [Oryza sativa Indica Group]
Length = 139
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFS +G++ ++ II D RS+G+G+VT S+E+ + A+
Sbjct: 8 YRCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIE 67
Query: 118 DMNGKLLDGRVIFVDNVRPSR 138
MNGK LDGR I V+ + R
Sbjct: 68 GMNGKELDGRNITVNEAQSRR 88
>gi|2826811|emb|CAA05727.1| AtGRP2 [Arabidopsis thaliana]
Length = 150
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T L DAF+ FG V +A +I+D RS+G+G+V + E A A+ +M+GK
Sbjct: 41 GLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE 100
Query: 124 LDGRVIFVD--NVRPS 137
L+GR I V+ N RPS
Sbjct: 101 LNGRHIRVNPANDRPS 116
>gi|319902685|ref|YP_004162413.1| RNP-1 like RNA-binding protein [Bacteroides helcogenes P 36-108]
gi|319417716|gb|ADV44827.1| RNP-1 like RNA-binding protein [Bacteroides helcogenes P 36-108]
Length = 102
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++FSTT L D FS++G+V+ A +I D RS+G+ +V +E AQKA+ ++NG
Sbjct: 7 GLNFSTTDADLNDLFSEYGEVSSARVITDRETGRSRGFAFVEMPDDEAAQKAIDELNGAE 66
Query: 124 LDGRVIFVDNVRP 136
D + I V+ RP
Sbjct: 67 YDNKTISVNVARP 79
>gi|829254|emb|CAA49174.1| glycine-rich RNA-binding protein [Arabidopsis thaliana]
Length = 139
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T L DAF+ FG V +A +I+D RS+G+G+V + E A A+ +M+GK
Sbjct: 22 GLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE 81
Query: 124 LDGRVIFVD--NVRPS 137
L+GR I V+ N RPS
Sbjct: 82 LNGRHIRVNPANDRPS 97
>gi|340379888|ref|XP_003388457.1| PREDICTED: RNA-binding protein 24-like [Amphimedon queenslandica]
Length = 214
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+ + TT E L D F+QFG + EA +I D ++SKGYG+VT +E+A+KA + N +
Sbjct: 22 GLPYHTTNETLYDFFAQFGDIEEAVVIHDRVTSKSKGYGFVTMKHKEDAEKACANPN-PV 80
Query: 124 LDGR 127
+DGR
Sbjct: 81 IDGR 84
>gi|799015|emb|CAA89058.1| putative glycine rich RNA binding protein [Solanum tuberosum]
Length = 175
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++TT + L+DAFSQ+ +V E+ II D RS+G+G+VT E+ + A+
Sbjct: 6 YRCFVGGLAWATTDQTLSDAFSQYAEVVESKIINDRETGRSRGFGFVTFKDEQAMRDAIE 65
Query: 118 DMNGKLLDGRVIFVD 132
MN + LDGR I V+
Sbjct: 66 GMNRQDLDGRNITVN 80
>gi|395325784|gb|EJF58201.1| hypothetical protein DICSQDRAFT_67439, partial [Dichomitus squalens
LYAD-421 SS1]
Length = 94
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 48/69 (69%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++TT + L +AFS +GQ+ ++ ++ D RS+G+G+VT S+ EAQ A+ +N +
Sbjct: 1 NLSWNTTDDNLRNAFSTYGQILDSIVMRDRDTGRSRGFGFVTFSSGSEAQSAIASLNEQE 60
Query: 124 LDGRVIFVD 132
LDGR I V+
Sbjct: 61 LDGRRIKVN 69
>gi|256082940|ref|XP_002577709.1| splicing factor [Schistosoma mansoni]
gi|360043602|emb|CCD81148.1| putative splicing factor [Schistosoma mansoni]
Length = 463
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ ++ T+EML F FG++ + +I D NRS+GYG+VT ++A+KAL +NG
Sbjct: 209 SLHYNITEEMLKGIFEPFGKIEDIKLIKDPTTNRSQGYGFVTYVNSDDAKKALDQLNGFE 268
Query: 124 LDGRVIFVDNVRPSRRY 140
L GR + V++V Y
Sbjct: 269 LAGRPMKVNHVTERSEY 285
>gi|421976742|gb|AFX73254.1| glycine rich RNA binding protein 1a [Solanum lycopersicum]
Length = 164
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++++TT L+DAFS +G+V ++ II D RS+G+G+VT E+ + A+ MNG+
Sbjct: 13 GLAWATTDRTLSDAFSTYGEVVDSKIINDRETGRSRGFGFVTFKDEKSMKDAISGMNGQE 72
Query: 124 LDGRVIFVDNVRP 136
LDGR I V+ +
Sbjct: 73 LDGRNITVNEAQA 85
>gi|349804063|gb|AEQ17504.1| putative cold-inducible rna-binding protein b [Hymenochirus
curtipes]
Length = 123
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 45/69 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F T ++ L F ++GQ++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 10 GLNFDTNEDGLEQVFGKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKA 69
Query: 124 LDGRVIFVD 132
+DGR I VD
Sbjct: 70 VDGRQIRVD 78
>gi|148231554|ref|NP_001080069.1| cold-inducible RNA-binding protein A [Xenopus laevis]
gi|284018072|sp|O93235.2|CIRBA_XENLA RecName: Full=Cold-inducible RNA-binding protein A; AltName:
Full=Cold-inducible RNA-binding protein; Short=XCIRP;
AltName: Full=Cold-inducible RNA-binding protein 1;
Short=XCIRP-1; AltName: Full=Glycine-rich RNA-binding
protein CIRP-A
gi|27735413|gb|AAH41204.1| Cirbp-prov protein [Xenopus laevis]
Length = 166
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 48/74 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F T ++ L AF+++G+++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 11 GLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKS 70
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 71 VDGRQIRVDQAGKS 84
>gi|351722320|ref|NP_001236472.1| uncharacterized protein LOC100306540 [Glycine max]
gi|255628821|gb|ACU14755.1| unknown [Glycine max]
Length = 146
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T + +L DAF Q G++ E +I D +S+GYG+V +E A A +MNG++
Sbjct: 64 GLSYDTNEPILRDAFGQHGEIIEVKVICDHVTGKSRGYGFVRFVSETTAAAARKEMNGQI 123
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I V R
Sbjct: 124 LDGRRIRVSYAHKGER 139
>gi|145333041|ref|NP_001078386.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
gi|332657936|gb|AEE83336.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
Length = 129
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T L DAF+ FG V +A +I+D RS+G+G+V + E A A+ +M+GK
Sbjct: 41 GLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE 100
Query: 124 LDGRVIFVD--NVRPS 137
L+GR I V+ N RPS
Sbjct: 101 LNGRHIRVNPANDRPS 116
>gi|77166221|ref|YP_344746.1| RNA-binding protein, RNP-1 [Nitrosococcus oceani ATCC 19707]
gi|254435869|ref|ZP_05049376.1| RNA-binding protein [Nitrosococcus oceani AFC27]
gi|76884535|gb|ABA59216.1| RNA-binding protein, RNP-1 [Nitrosococcus oceani ATCC 19707]
gi|207088980|gb|EDZ66252.1| RNA-binding protein [Nitrosococcus oceani AFC27]
Length = 119
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ T E L AF +G+V+ A +I+D NRSKG+G+V +++E+A+ A+ +M+
Sbjct: 24 NLSYQVTDEDLRAAFENYGEVSSAKVIVDKFSNRSKGFGFVEMASKEDAEAAIKEMHDSD 83
Query: 124 LDGRVIFVDNVRPSRRYNTDASLARQPA 151
+ GR + V+ RP + + R
Sbjct: 84 IKGRQVVVNEARPRNESSNNGGFRRNDG 111
>gi|255571962|ref|XP_002526922.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
gi|223533674|gb|EEF35409.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
Length = 166
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T+ + L +AFS +G+V E+ II D RS+G+G+VT + E+ + A+
Sbjct: 8 YRCFVGGLAWATSDKALEEAFSAYGEVLESKIINDRETGRSRGFGFVTFNNEKSMRDAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 68 GMNGQNLDGRNITVN 82
>gi|18076086|emb|CAC80549.1| glycine-rich RNA-binding protein [Ricinus communis]
Length = 165
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T+ + L +AFS +G+V E+ II D RS+G+G+VT + E+ + A+
Sbjct: 8 YRCFVGGLAWATSDKALEEAFSAYGEVLESKIINDRETGRSRGFGFVTFNNEKSMRDAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 68 GMNGQNLDGRNITVN 82
>gi|387913868|gb|AFK10543.1| cold-inducible RNA-binding protein-like protein [Callorhinchus
milii]
Length = 178
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F T ++ L + F+++G V+E +I + RSKG G+VT ++A+ AL MNGK
Sbjct: 11 GINFETDEQTLEEVFAKYGDVSEVIVIRERDTQRSKGLGFVTFENPDDARDALAGMNGKT 70
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD+ S
Sbjct: 71 VDGRQIRVDHAGKS 84
>gi|34851124|gb|AAL13082.1| putative glycine-rich RNA-binding protein [Prunus avium]
Length = 178
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T + L AFS FG++ E+ II D RS+G+G+VT S E+ + A+
Sbjct: 8 FRCFVGGLAWATDNDALERAFSPFGEIIESKIINDRETGRSRGFGFVTFSNEKAMRDAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 68 GMNGQNLDGRNITVN 82
>gi|2293480|gb|AAB65412.1| glycine-rich protein [Oryza sativa Indica Group]
Length = 161
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFS +G++ E+ II D RS+G+G+VT S+E+ + A+
Sbjct: 8 YRCFVGGLAWATDDRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 68 GMNGKELDGRNITVN 82
>gi|1934994|emb|CAA73034.1| SGRP-1 [Solanum commersonii]
Length = 162
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++++TT L+DAFS +G+V ++ II D RS+G+G+VT E+ ++A+ MNG
Sbjct: 13 GLAWATTDRTLSDAFSTYGEVVDSKIINDRETGRSRGFGFVTFKDEKSMKEAISGMNGSE 72
Query: 124 LDGRVIFVDNVRP 136
LDGR I V+ +
Sbjct: 73 LDGRNITVNEAQA 85
>gi|624925|dbj|BAA05170.1| RNA-binding glycine rich protein [Nicotiana sylvestris]
gi|295393567|gb|ADG03639.1| RNA-binding glycine-rich protein [Nicotiana tabacum]
Length = 259
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T + L +AFSQ G+V EA +IMD RS+G+G+V+ ++ EEA AL ++G+
Sbjct: 46 GLSWGTDETSLKEAFSQHGEVIEARVIMDRDTGRSRGFGFVSFTSTEEAASALTALDGQD 105
Query: 124 LDGRVIFVD 132
L GR I V+
Sbjct: 106 LHGRQIRVN 114
>gi|229367642|gb|ACQ58801.1| Cold-inducible RNA-binding protein [Anoplopoma fimbria]
Length = 179
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T +E LA AF ++G + + +I D +S+G+G+V E+A+ A+ MNG+
Sbjct: 11 GLSFETNEESLAAAFGKYGTIEKVDVIRDRETEKSRGFGFVKYDNAEDAKDAMDGMNGQT 70
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD R
Sbjct: 71 LDGRTIRVDEAGKGGR 86
>gi|20257697|gb|AAM16014.1| glycine-rich RNA binding protein [Zea mays]
Length = 148
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT S + A+
Sbjct: 11 YRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSXXXXXRSAIE 70
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 71 GMNGKELDGRNITVN 85
>gi|410931844|ref|XP_003979305.1| PREDICTED: RNA-binding protein 39-like, partial [Takifugu rubripes]
Length = 324
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T+EML F FG++ ++MD RSKGYG++T + E A+KAL +NG
Sbjct: 148 SLHFNITEEMLRGIFEPFGRIENIQLMMDTDTGRSKGYGFITFADAECAKKALEQLNGFE 207
Query: 124 LDGRVIFVDNV 134
L GR + V +V
Sbjct: 208 LAGRPMKVGHV 218
>gi|406959178|gb|EKD86596.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 81
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ ++ LA+ F+Q G V A ++ D RS+G+G+V ST+EEAQ A+ ++NG
Sbjct: 5 SLPWAVDDAKLAELFAQAGNVVSAQVVKDRETGRSRGFGFVEMSTDEEAQNAVKNLNGTD 64
Query: 124 LDGRVIFVDNVRP 136
++GR I V+ RP
Sbjct: 65 VEGRKIVVNIARP 77
>gi|403215569|emb|CCK70068.1| hypothetical protein KNAG_0D03220 [Kazachstania naganishii CBS
8797]
Length = 399
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S+S E L + F+ G V A +IM+ G +RS+GYGYV A+KAL +M GK +
Sbjct: 156 LSWSVDDEWLKNEFAPIGGVVSARVIMERGTDRSRGYGYVDFEDISYAEKALKEMQGKEI 215
Query: 125 DGRVIFVD 132
DGR I VD
Sbjct: 216 DGRPINVD 223
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF ++ L + F +FG++ I + KG+GYV + E+A+KAL + G+
Sbjct: 256 NLSFDADRDNLYEIFGKFGEIISVRIPTHPETEQPKGFGYVQYTNTEDAKKALDALQGES 315
Query: 124 LDGRVIFVD 132
++ R + +D
Sbjct: 316 INDRPVRLD 324
>gi|343958808|dbj|BAK63259.1| cold-inducible RNA-binding protein [Pan troglodytes]
Length = 225
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+SF T ++ L FS++GQ++E ++ D RS+G G+VT ++A+ A++ MNGK +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGSGFVTFENIDDAKDAMMAMNGKSV 72
Query: 125 DGRVIFVDNVRPS 137
DGR I VD S
Sbjct: 73 DGRQIRVDQAGKS 85
>gi|300113043|ref|YP_003759618.1| RNP-1 like RNA-binding protein [Nitrosococcus watsonii C-113]
gi|299538980|gb|ADJ27297.1| RNP-1 like RNA-binding protein [Nitrosococcus watsonii C-113]
Length = 118
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ T E L AF +G+V+ A +I+D NRSKG+G+V +++E+A+ A+ +M+
Sbjct: 24 NLSYQVTDEDLRAAFENYGEVSSAKVIVDKFSNRSKGFGFVEMASKEDAETAIKEMHDSD 83
Query: 124 LDGRVIFVDNVRPSRRYNT 142
+ GR I V+ RP N
Sbjct: 84 IKGRQIVVNEARPRNESNN 102
>gi|193212689|ref|YP_001998642.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
gi|193086166|gb|ACF11442.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
Length = 88
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ + T+ L DAFS+FG V +A++IMD RSKG+G+V + +EEA +A+ +N
Sbjct: 7 NLDYEITETDLRDAFSEFGDVAKASVIMDKFSGRSKGFGFVEMTNDEEANEAISSLNESK 66
Query: 124 LDGRVIFVDNVRP 136
L R I V+ +P
Sbjct: 67 LGSRNIKVNEAKP 79
>gi|21672973|ref|NP_661038.1| RNA-binding protein [Chlorobium tepidum TLS]
gi|21646033|gb|AAM71380.1| RNA-binding protein [Chlorobium tepidum TLS]
Length = 90
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S T E L D FS+FGQV A II D RSKG+G+V E EA++A+ MN K
Sbjct: 7 NLPYSVTDEDLRDKFSEFGQVHSANIITDKFSGRSKGFGFVDMPNESEAREAIDAMNDKD 66
Query: 124 LDGRVIFVD 132
GR I V+
Sbjct: 67 FKGRTIKVN 75
>gi|75319742|sp|Q43472.1|GRP_HORVU RecName: Full=Glycine-rich RNA-binding protein blt801; AltName:
Full=Low temperature-responsive RNA-binding protein
gi|1229138|gb|AAB07749.1| low temperature-responsive RNA-binding protein [Hordeum vulgare
subsp. vulgare]
Length = 161
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC + ++T + L +AFS++G V ++ II D RS+G+G+VT +++E ++A+
Sbjct: 6 YRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIE 65
Query: 118 DMNGKLLDGRVIFVDNVRPSR 138
MNG+ LDGR I V+ + R
Sbjct: 66 AMNGQDLDGRNITVNEAQSRR 86
>gi|302757806|ref|XP_002962326.1| hypothetical protein SELMODRAFT_78193 [Selaginella moellendorffii]
gi|300169187|gb|EFJ35789.1| hypothetical protein SELMODRAFT_78193 [Selaginella moellendorffii]
Length = 89
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T+ ++ +AFS FG+V E I+ D +SKGYG++T +E +AQ AL M+GK
Sbjct: 1 GLSWGLTEGIVQEAFSSFGEVREVRIVKDRETGKSKGYGFITYVSEADAQDALQAMDGKN 60
Query: 124 LDGRVIFVD 132
L+GR I V+
Sbjct: 61 LNGREIRVN 69
>gi|189237575|ref|XP_974855.2| PREDICTED: similar to splicing factor [Tribolium castaneum]
Length = 501
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++ E+A+KAL +NG
Sbjct: 247 SLHFNITEDMLRSIFEPFGKIDNIQLIMDPETGRSKGYGFIAFRNCEDAKKALEQLNGFE 306
Query: 124 LDGRVIFVDNV 134
L GR + V NV
Sbjct: 307 LAGRPMKVGNV 317
>gi|333993552|ref|YP_004526165.1| RNP-1 like RNA-binding protein [Treponema azotonutricium ZAS-9]
gi|333734416|gb|AEF80365.1| RNP-1 like RNA-binding protein [Treponema azotonutricium ZAS-9]
Length = 100
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ TT++ L + FSQFG VT + II D SKG+G++ ST+EEA A+ NG
Sbjct: 9 NLSYQTTEDGLRNLFSQFGNVTSSKIIFDRESGSSKGFGFIEMSTDEEAAAAITGTNGHE 68
Query: 124 LDGRVIFVDNV--RPSR 138
+GR + V+ +P R
Sbjct: 69 FEGRQLRVNEAMDKPRR 85
>gi|53804863|ref|YP_113486.1| RNA-binding protein [Methylococcus capsulatus str. Bath]
gi|53758624|gb|AAU92915.1| RNA-binding protein [Methylococcus capsulatus str. Bath]
Length = 95
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L F+ +G V A ++MD RS+G+G+V +++EAQ A+ +NGK +DGR + V+
Sbjct: 19 LERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGLNGKEMDGRNLMVNE 78
Query: 134 VRP 136
RP
Sbjct: 79 ARP 81
>gi|406965367|gb|EKD91001.1| Glycine-rich RNA-binding protein [uncultured bacterium]
Length = 87
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ + L +AFS++G++ +AT++ D RS+G+G+V + + + KA+ +MNG
Sbjct: 12 SLPWGVDDSGLREAFSKYGEIIQATVLKDRQTGRSRGFGFVEFANDADGDKAIQEMNGAD 71
Query: 124 LDGRVIFVDNVRP 136
+DGR I V+ RP
Sbjct: 72 MDGRNIVVNEARP 84
>gi|365088445|ref|ZP_09327889.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363417101|gb|EHL24188.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 111
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 67 FSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG 126
+S T L FS+FG V+ A ++MD RSKG+G+V + E AQ A+ ++G +DG
Sbjct: 12 YSVTDASLQSNFSEFGGVSSAKVMMDRETGRSKGFGFVEMANAEVAQAAISGLHGMSVDG 71
Query: 127 RVIFVDNVRPSRRYNTDAS 145
R I V+ RP R +DA
Sbjct: 72 RTIVVNLARP-REERSDAG 89
>gi|366987527|ref|XP_003673530.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
gi|342299393|emb|CCC67147.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
Length = 415
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S+S E L F G V A +IM+ G +RS+GYGYV + A+KA+ +M GK +
Sbjct: 169 LSWSIDDEWLKKEFEHIGGVVSARVIMERGTDRSRGYGYVDFEDKSYAEKAIKEMQGKEI 228
Query: 125 DGRVIFVD 132
DGR I VD
Sbjct: 229 DGREINVD 236
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 43/73 (58%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF+ ++ +++ FS++G++ I + KG+GYV + E+A+KAL + G+
Sbjct: 268 NLSFNADRDAISELFSKYGEIISVRIPTHPETEQPKGFGYVQYTNVEDAKKALEGLQGEY 327
Query: 124 LDGRVIFVDNVRP 136
+D R + +D P
Sbjct: 328 IDNRPVRLDYSTP 340
>gi|74006873|ref|XP_863171.1| PREDICTED: uncharacterized protein LOC609457 isoform 2 [Canis lupus
familiaris]
Length = 162
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D F FG ++E ++ D RS+G+G++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 72 LDGRQIRVDHAGKSAR 87
>gi|440789937|gb|ELR11228.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 506
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S+STT E L AF ++G+V EA +I + G RS+G+G V E +A A M+G L
Sbjct: 15 LSWSTTSETLRAAFEKYGKVEEAKVISEPGTGRSRGFGAVMYYNESDALAAYKGMHGVEL 74
Query: 125 DGRVIFVDNVR 135
+GR ++VD R
Sbjct: 75 EGRFLYVDRYR 85
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 59 FWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
+ + + SFS E L D FS+FG +T +++D RSKG G+V+ ST EEA KAL +
Sbjct: 321 YLKNLDDSFS--DEKLKDLFSEFGTITSCKVMID-SNGRSKGSGFVSFSTPEEASKALNE 377
Query: 119 MNGKLLDGRVIFV 131
MNGKL+ + ++V
Sbjct: 378 MNGKLIGRKPLYV 390
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D F+ FG V + +D +SKGYG+V EE AQ A+ +NG L++ +
Sbjct: 133 SIDNKALHDTFAAFGTVLSCKVALD-SSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDK 191
Query: 128 VIFVDN-VRPSRRYNTDAS 145
++V +R R T+ S
Sbjct: 192 QVYVGLFIRRQEREQTNGS 210
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
+ +E L D FSQ Q+ + D K S GY YV + ++A A+ +N L+G+
Sbjct: 45 NVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELLNFTPLNGK 104
Query: 128 VIFV 131
I +
Sbjct: 105 PIRI 108
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 59 FWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
+ + + SFS K L D FS+FG +T +++D RSKG G+V+ ST EEA KAL +
Sbjct: 321 YLKNLDDSFSDEK--LKDLFSEFGTITSCKVMID-SNGRSKGSGFVSFSTPEEASKALNE 377
Query: 119 MNGKLLDGRVIFV 131
MNGKL+ + ++V
Sbjct: 378 MNGKLIGRKPLYV 390
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D F+ FG V + +D +SKGYG+V EE AQ A+ +NG L++ +
Sbjct: 133 SIDNKALHDTFAAFGTVLSCKVALD-SSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDK 191
Query: 128 VIFVDN-VRPSRRYNTDAS 145
++V +R R T+ S
Sbjct: 192 QVYVGLFIRRQEREQTNGS 210
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
+ +E L D FSQ Q+ + D K S GY YV + ++A A+ +N L+G+
Sbjct: 45 NVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELLNFTPLNGK 104
Query: 128 VIFV 131
I +
Sbjct: 105 PIRI 108
>gi|7439974|pir||JC6571 cold-inducible RNA-binding protein homolog - clawed frog
gi|3341887|dbj|BAA31861.1| cold-inducible RNA binding protein [Xenopus laevis]
Length = 163
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 48/74 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F T ++ L AF+++G+++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 11 GLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKS 70
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 71 VDGRQIRVDQAGKS 84
>gi|449477140|ref|XP_004154942.1| PREDICTED: uncharacterized LOC101218446 [Cucumis sativus]
Length = 287
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 48/69 (69%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SFST + L +AF+++G+V EA +I+D RS+G+G+VT ++ EEA A+ ++G+
Sbjct: 49 GISFSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQD 108
Query: 124 LDGRVIFVD 132
L GR + V+
Sbjct: 109 LHGRRVRVN 117
>gi|20257701|gb|AAM16016.1| glycine-rich RNA binding protein [Zea mays]
Length = 154
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT S + A+
Sbjct: 18 RCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSXXXXXRSAIEG 77
Query: 119 MNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 78 MNGKELDGRNITVN 91
>gi|449441097|ref|XP_004138320.1| PREDICTED: uncharacterized protein LOC101218446 [Cucumis sativus]
Length = 232
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 48/69 (69%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SFST + L +AF+++G+V EA +I+D RS+G+G+VT ++ EEA A+ ++G+
Sbjct: 49 GISFSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQD 108
Query: 124 LDGRVIFVD 132
L GR + V+
Sbjct: 109 LHGRRVRVN 117
>gi|114776510|ref|ZP_01451555.1| RNA-binding region RNP-1 (RNA recognition motif) [Mariprofundus
ferrooxydans PV-1]
gi|114553340|gb|EAU55738.1| RNA-binding region RNP-1 (RNA recognition motif) [Mariprofundus
ferrooxydans PV-1]
Length = 81
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SFST+ E L + FS+FG V AT++ + N+S+G+G+V + E KA+ +NGK
Sbjct: 7 NMSFSTSDEELRELFSRFGTVASATVVTNNETNQSRGFGFVEMPDDNEGNKAIRSLNGKA 66
Query: 124 LDGRVIFVDNVRPS 137
GR + V+ +R +
Sbjct: 67 FAGRKLRVNEIRSA 80
>gi|3342756|gb|AAC41383.1| RNA-binding protein AxRNBP [Ambystoma mexicanum]
Length = 144
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF + + L AFS++G V +A ++ D RS+G+G+VT +A++AL MNG+
Sbjct: 13 GLSFDSNEHSLESAFSKYGDVCDAVVVKDRETGRSRGFGFVTFRNPSDAKEALHAMNGES 72
Query: 124 LDGRVIFVD 132
LDGR I VD
Sbjct: 73 LDGRQIRVD 81
>gi|270007747|gb|EFA04195.1| hypothetical protein TcasGA2_TC014444 [Tribolium castaneum]
Length = 522
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++ E+A+KAL +NG
Sbjct: 268 SLHFNITEDMLRSIFEPFGKIDNIQLIMDPETGRSKGYGFIAFRNCEDAKKALEQLNGFE 327
Query: 124 LDGRVIFVDNV 134
L GR + V NV
Sbjct: 328 LAGRPMKVGNV 338
>gi|226480630|emb|CAX73412.1| TIA1 cytotoxic granule-associated RNA binding protein [Schistosoma
japonicum]
Length = 651
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
E L AFS FG +TE II D+ + KGYG+V +T +EA++A+ MNG+++ R I
Sbjct: 171 ETLLAAFSNFGTITECKIIKDMHTQKPKGYGFVAYATRQEAERAIRIMNGQIIGSRAI 228
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
T+++L D+F QFG++ E I D KG+ +V + A +A+V M+GK++
Sbjct: 274 TEKLLQDSFKQFGEIKEIRIFKD------KGFSFVRFDSHVAATQAIVTMHGKIV 322
>gi|239611503|gb|EEQ88490.1| glycine-rich RNA-binding protein [Ajellomyces dermatitidis ER-3]
gi|327348484|gb|EGE77341.1| glycine-rich RNA-binding protein [Ajellomyces dermatitidis ATCC
18188]
Length = 143
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT E L F ++G + EAT++ D NRS+G+G+V +++ EA A+ MN +
Sbjct: 8 GLAWHTTDETLRVGFEKYGTIEEATVVKDRDTNRSRGFGFVRFASDTEADTAMNAMNNQE 67
Query: 124 LDGRVIFVD 132
DGRVI VD
Sbjct: 68 FDGRVIRVD 76
>gi|423196273|ref|ZP_17182856.1| hypothetical protein HMPREF1171_00888 [Aeromonas hydrophila SSU]
gi|404632497|gb|EKB29102.1| hypothetical protein HMPREF1171_00888 [Aeromonas hydrophila SSU]
Length = 92
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ T + L FSQFGQV + II+D +SKG+G++ EA+KA+ ++G
Sbjct: 7 NLSYRMTADELKTVFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGEAEKAIAGLHGTE 66
Query: 124 LDGRVIFVDNVRPSRRYNTDASLAR 148
+ GR I V+ +P TDA R
Sbjct: 67 IGGRTITVNQAKPK----TDAPRGR 87
>gi|15822705|gb|AAL07519.1| RNA-binding protein precursor [Solanum tuberosum]
Length = 339
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 40 LHCIVRPSSDLIMQLVNVSFWRCI-----------SVSFSTTKEMLADAFSQFGQVTEAT 88
L V +++L + N S ++ I +S+ T + L + FSQ+G+V EA
Sbjct: 11 LKHGVGKNTNLELSASNGSLFQTIRSMSSSKLFVGGLSYGTDESSLKETFSQYGEVIEAR 70
Query: 89 IIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSRR 139
+I+D RS+G+G+++ + EEA A+ M+G+ L GR I V+ RR
Sbjct: 71 VILDRETGRSRGFGFISFPSSEEATSAMQAMDGQDLHGRRIKVNYATEKRR 121
>gi|332142478|ref|YP_004428216.1| hypothetical protein MADE_1015430 [Alteromonas macleodii str. 'Deep
ecotype']
gi|410862690|ref|YP_006977924.1| hypothetical protein amad1_15375 [Alteromonas macleodii AltDE1]
gi|327552500|gb|AEA99218.1| hypothetical protein MADE_1015430 [Alteromonas macleodii str. 'Deep
ecotype']
gi|410819952|gb|AFV86569.1| hypothetical protein amad1_15375 [Alteromonas macleodii AltDE1]
Length = 117
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S T+E L D F +FG + ++MD N SKG+G+V ST+EE KA+ +N K++DG+
Sbjct: 11 SFTQENLEDLFFEFGTIASCDLVMDEATNLSKGFGFVEMSTQEETDKAIEKLNAKVIDGK 70
Query: 128 VIFV 131
I V
Sbjct: 71 KIRV 74
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
ST E L F+ FG VT A +I+ G R KG+G+V+ S+ EEA+KA+ +M+GK+L R
Sbjct: 312 STDDEHLRKIFAPFGTVTSAKVIVKGG--RRKGFGFVSFSSREEAKKAVEEMHGKMLSAR 369
Query: 128 VIFVDNVR 135
++V R
Sbjct: 370 PLYVSYAR 377
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
TT E L + FSQ+G ++ I+ D +SKG+G++ +A++A+ ++NGK GR
Sbjct: 209 GTTDEYLLEIFSQYGPLSSVKIMTD-DSGKSKGFGFIRFECHADAKRAIEEVNGKQFGGR 267
Query: 128 VIFV 131
I+V
Sbjct: 268 KIYV 271
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L D F+ FG + ++ D +N KG+G+V T E A KA+ +MNG L+ R +FV
Sbjct: 123 LYDLFAGFGTILSCKVVSD--ENGPKGHGFVHFETREAADKAIKEMNGSLVKERKVFVGQ 180
Query: 134 V-RPSRR 139
RP++R
Sbjct: 181 FKRPNQR 187
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
T+ ML + FS G + + D +RS GYGYV E+A AL MN +L G+ +
Sbjct: 31 TEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGHALNTMNFDVLHGKPV 90
Query: 130 FV 131
+
Sbjct: 91 RI 92
>gi|168008942|ref|XP_001757165.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691663|gb|EDQ78024.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 161
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 54 LVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEE 111
+ V +RC +S++TT + L + F +FG V EA +I+D S+G+G+V E
Sbjct: 1 MAEVEEFRCFVGGLSWNTTDKGLEEEFRRFGNVLEAKVIVDKETGHSRGFGFVNFGDERS 60
Query: 112 AQKALVDMNGKLLDGRVIFVDNVRP 136
+A+ ++GK LDGR I V+ +P
Sbjct: 61 MDEAIERLHGKELDGRPITVNRAKP 85
>gi|20257681|gb|AAM16006.1| glycine-rich RNA binding protein [Zea mays]
Length = 148
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT S + A+
Sbjct: 11 YRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSXXXAMRSAIE 70
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 71 GMNGKELDGRNITVN 85
>gi|225441175|ref|XP_002265930.1| PREDICTED: uncharacterized protein LOC100257264 [Vitis vinifera]
Length = 332
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 49/73 (67%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+ ++T++ L DAFS++G++ E+ ++M+ R +G+G++T + + A+ +M+G+
Sbjct: 13 GLGWNTSERHLEDAFSRYGKILESLVMMERDTGRPRGFGFITFADHRAMEDAIREMHGRE 72
Query: 124 LDGRVIFVDNVRP 136
LDGRVI V+ +P
Sbjct: 73 LDGRVISVNKAQP 85
>gi|59858555|ref|NP_001012304.1| RNA-binding protein 39 [Danio rerio]
gi|27882534|gb|AAH44487.1| RNA binding motif protein 39a [Danio rerio]
gi|182892014|gb|AAI65689.1| Rbm39a protein [Danio rerio]
Length = 523
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 252 SLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFE 311
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 312 LAGRPMKVGHV----TERTDASTA 331
>gi|22328599|ref|NP_193122.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|48310472|gb|AAT41827.1| At4g13860 [Arabidopsis thaliana]
gi|332657937|gb|AEE83337.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 87
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 48/68 (70%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S +TT +ML +AFS +G V +A ++ D +RS+G+G+VT S+ EA+ A+ M+GK
Sbjct: 9 NLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKE 68
Query: 124 LDGRVIFV 131
L+GR + V
Sbjct: 69 LNGRRVSV 76
>gi|297598418|ref|NP_001045556.2| Os01g0974600 [Oryza sativa Japonica Group]
gi|215768629|dbj|BAH00858.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222619969|gb|EEE56101.1| hypothetical protein OsJ_04953 [Oryza sativa Japonica Group]
gi|255674125|dbj|BAF07470.2| Os01g0974600 [Oryza sativa Japonica Group]
Length = 116
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T + L DAFSQ G + + +I +SKGYG+V ++E+EA AL M G++
Sbjct: 43 GLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKMGGEV 102
Query: 124 LDGRVIFV 131
+DGR I V
Sbjct: 103 IDGRNIRV 110
>gi|125541605|gb|EAY88000.1| hypothetical protein OsI_09422 [Oryza sativa Indica Group]
Length = 318
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++ T EML + F + G V A ++ D RS+GYG+V ST+EE +AL +NG
Sbjct: 244 NLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTE 303
Query: 124 LDGRVIFVD 132
L+GR I V+
Sbjct: 304 LEGREIRVN 312
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 89 IIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI---FVDNVRP 136
++ D RS+G+ +VT ST E+ ++ + +++G L GR + F D +P
Sbjct: 178 VLYDRATGRSRGFAFVTMSTIEDCEQVIKNLDGSLYSGRTMRVNFADKPKP 228
>gi|218189840|gb|EEC72267.1| hypothetical protein OsI_05421 [Oryza sativa Indica Group]
Length = 116
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T + L DAFSQ G + + +I +SKGYG+V ++E+EA AL M G++
Sbjct: 43 GLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKMGGEV 102
Query: 124 LDGRVIFV 131
+DGR I V
Sbjct: 103 IDGRNIRV 110
>gi|351725105|ref|NP_001235801.1| uncharacterized protein LOC100305467 [Glycine max]
gi|255625591|gb|ACU13140.1| unknown [Glycine max]
Length = 156
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFSQ+G V E+ II D RS+G+G+VT ++E+ + A+
Sbjct: 8 YRCFVGGLAWATDNYDLEKAFSQYGDVVESKIINDRETGRSRGFGFVTFASEDSMRDAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 68 GMNGQNLDGRNITVN 82
>gi|392927018|ref|NP_509705.3| Protein TIAR-3 [Caenorhabditis elegans]
gi|211970450|emb|CAB01717.3| Protein TIAR-3 [Caenorhabditis elegans]
Length = 450
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S + E+L F++FG+V+EA +I D+ +SKGYG+V+ ++ A+ A+ MNGK +
Sbjct: 232 LSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWI 291
Query: 125 DGRVI 129
R +
Sbjct: 292 GKRAV 296
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S TT L D FS +G + E I +++ Y +V +E A KA+++MNGK
Sbjct: 333 NISQQTTDADLRDLFSTYGDIAEVRIF------KTQRYAFVRYEKKECATKAIMEMNGKE 386
Query: 124 LDG 126
+ G
Sbjct: 387 MAG 389
>gi|115384864|ref|XP_001208979.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114196671|gb|EAU38371.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 157
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT E L F +FG V A ++ D RS+G+G+VT ++ +EA AL ++N +
Sbjct: 35 GLAWHTTDESLRAGFEKFGTVDNAIVVKDRDTGRSRGFGFVTFTSPQEADAALNELNNQE 94
Query: 124 LDGRVIFVD 132
DGR+I VD
Sbjct: 95 FDGRIIRVD 103
>gi|544416|sp|Q05966.1|GRP10_BRANA RecName: Full=Glycine-rich RNA-binding protein 10
gi|17819|emb|CAA78513.1| glycine-rich RNA binding protein [Brassica napus]
Length = 169
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L FSQFG+V ++ II D RS+G+G+VT E+ + A+
Sbjct: 6 YRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAID 65
Query: 118 DMNGKLLDGRVIFVDNVRP 136
+MNGK LDGR I V+ +
Sbjct: 66 EMNGKELDGRTITVNEAQS 84
>gi|357473263|ref|XP_003606916.1| Glycine-rich RNA binding protein [Medicago truncatula]
gi|355507971|gb|AES89113.1| Glycine-rich RNA binding protein [Medicago truncatula]
Length = 190
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T + L AFS+FG++T++ +I D RS+G+G+VT + E+ + A+
Sbjct: 8 YRCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIE 67
Query: 118 DMNGKLLDGRVIFVDNVRP 136
+MNG+ +DGR I V+ +
Sbjct: 68 EMNGQDIDGRNITVNEAQS 86
>gi|261205092|ref|XP_002627283.1| glycine-rich RNA-binding protein [Ajellomyces dermatitidis
SLH14081]
gi|239592342|gb|EEQ74923.1| glycine-rich RNA-binding protein [Ajellomyces dermatitidis
SLH14081]
Length = 143
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT E L F ++G + EAT++ D NRS+G+G+V +++ EA A+ MN +
Sbjct: 8 GLAWHTTDETLRVGFEKYGTIEEATVVKDRDTNRSRGFGFVRFASDTEADTAMNAMNNQE 67
Query: 124 LDGRVIFVD 132
DGRVI VD
Sbjct: 68 FDGRVIRVD 76
>gi|117619969|ref|YP_856326.1| RNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117561376|gb|ABK38324.1| RNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 95
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ T + L FSQFGQV + II+D +SKG+G++ EA+KA+ ++G
Sbjct: 10 NLSYRMTADELTTVFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGEAEKAIAGLHGTE 69
Query: 124 LDGRVIFVDNVRPSRRYNTDASLAR 148
+ GR I V+ +P TDA R
Sbjct: 70 IGGRTITVNQAKPK----TDAPRGR 90
>gi|327271618|ref|XP_003220584.1| PREDICTED: RNA-binding protein 39-like [Anolis carolinensis]
Length = 578
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 312 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 371
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 372 LAGRPMKVGHV----TERTDASSA 391
>gi|299473651|emb|CBN78045.1| poly(A) binding protein [Ectocarpus siliculosus]
Length = 688
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 70 TKEMLADAFSQFGQVTEATIIMD-IGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128
T++ + +AF+ +G +T A +++D N+SKG+G+V S EEA KA+ +MNGK+L +
Sbjct: 352 TEDAMREAFAPYGTITSARVMVDNSNNNQSKGFGFVCFSAPEEATKAITEMNGKMLLNKP 411
Query: 129 IFV--DNVRPSRRYNTDASLARQPAQSP 154
I+V R RR +A A++ P
Sbjct: 412 IYVALAQRREVRRTQLEAQFAQRTGGMP 439
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
L D FS FG + + D SKGYGYV A A+ +NG L+ G+ + V
Sbjct: 146 LYDTFSLFGNILSCKVATD-DAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQVHV 202
>gi|255574887|ref|XP_002528350.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532218|gb|EEF34022.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 285
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+S T E L +AF ++G + A ++ D RS+GYG+V +T E + ALV +NG
Sbjct: 210 NLSWSVTSESLVEAFQEYGNIVGARVLYDGETGRSRGYGFVCYATRSEMENALVSLNGVE 269
Query: 124 LDGRVIFV 131
L+GR + V
Sbjct: 270 LEGRAMRV 277
>gi|403281374|ref|XP_003932163.1| PREDICTED: RNA-binding protein 39 [Saimiri boliviensis boliviensis]
Length = 502
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 316 LAGRPMKVGHV----TERTDASSA 335
>gi|20257709|gb|AAM16020.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT S + A+
Sbjct: 18 RCFVGGLAWATDXHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSXXXAMRSAIEG 77
Query: 119 MNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 78 MNGKELDGRNITVN 91
>gi|2267593|gb|AAB63589.1| glycine-rich RNA-binding protein [Oryza sativa Indica Group]
Length = 165
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFS +G++ E+ II D RS+G+G+VT S+E+ + A+
Sbjct: 8 YRCFVGGLAWATDNRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIE 67
Query: 118 DMNGKLLDGRVIFVDNVRPSR 138
M+GK LDGR I V+ + R
Sbjct: 68 GMSGKELDGRNITVNEAQSRR 88
>gi|255726450|ref|XP_002548151.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134075|gb|EER33630.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 472
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 43/65 (66%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S E L +AFS+FG + +A ++ D+ +RS+GYG+VT S + +A+ AL MNG+ L
Sbjct: 182 LSPEVNDEGLRNAFSKFGSLKQAHVMWDMQTSRSRGYGFVTFSEQADAELALQTMNGEWL 241
Query: 125 DGRVI 129
GR I
Sbjct: 242 GGRAI 246
>gi|215820612|ref|NP_001135965.1| RNA binding motif protein 39 [Acyrthosiphon pisum]
Length = 501
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ ++ T+EML F FG V ++MD RSKGYG++T E+A+KAL +NG
Sbjct: 244 SLHYNITEEMLRGIFEPFGHVDNIQLMMDTETGRSKGYGFLTYRNAEDAKKALEHLNGFE 303
Query: 124 LDGRVIFVDNV 134
+ GR + V +V
Sbjct: 304 IAGRPMKVGHV 314
>gi|430741539|ref|YP_007200668.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430013259|gb|AGA24973.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 119
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++++ + L FSQFG V A II+D NRSKG+G+V T+ +AQ A+ +NG
Sbjct: 9 NLTYNVNESDLEALFSQFGTVQSAQIIVDRDTNRSKGFGFVEMDTDAQAQAAIQGLNGHD 68
Query: 124 LDGRVIFVDNVRP 136
DGR + V+ +P
Sbjct: 69 HDGRNLTVNEAKP 81
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 6/85 (7%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S T E L++ FS+FG VT I+ D + S+G G+V ST EEA +AL +MNGK++ G+
Sbjct: 316 SVTDEKLSELFSEFGTVTSCKILRDP-QGISRGSGFVAFSTPEEATRALAEMNGKMVAGK 374
Query: 128 VIFVDNVRPSRRYNTDASLARQPAQ 152
++ V P+++ + AR PAQ
Sbjct: 375 PLY---VAPAQK--KEERKARLPAQ 394
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L D FS FG + I MD SKGYG+V EE AQ A+ +NG LL+ + ++V +
Sbjct: 128 LYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGH 186
Query: 134 VRPSRRYNTDASLA 147
+ R+ + D +L+
Sbjct: 187 FQ--RKQDRDNALS 198
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 53 QLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEA 112
QL S + + T L D F+Q GQV I D+ +S GYGYV S +A
Sbjct: 20 QLTTTSLY-VGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDA 78
Query: 113 QKALVDMNGKLLDGRVI 129
KA+ +N L+ + I
Sbjct: 79 AKAMDVLNFTPLNNKPI 95
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S S T + L + F ++G +T A ++ D+ +SK +G+V + A +A+ +NGK
Sbjct: 209 NLSESVTDDDLKNTFGEYGTITSAVVMRDV-DGKSKCFGFVNFENADAAAEAVEALNGKK 267
Query: 124 LDGRVIFVDNVRPSRRYNTDASLARQPAQSPEE 156
D + +V + ++Y + L + QS +E
Sbjct: 268 FDDKEWYVG--KALKKYERELELKERHEQSMKE 298
>gi|20257699|gb|AAM16015.1| glycine-rich RNA binding protein [Zea mays]
gi|20257705|gb|AAM16018.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT S + A+
Sbjct: 18 RCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSXXXAMRSAIEG 77
Query: 119 MNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 78 MNGKELDGRNITVN 91
>gi|20257679|gb|AAM16005.1| glycine-rich RNA binding protein [Zea mays]
Length = 154
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC ++++T L +AFS +G+V E+ II+D RS+G+G+VT S + A+
Sbjct: 18 RCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSXXXAMRSAIEG 77
Query: 119 MNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 78 MNGKELDGRNITVN 91
>gi|168036414|ref|XP_001770702.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678063|gb|EDQ64526.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 165
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 61 RCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118
RC +S++TT + L + F FG V EA +I+D S+G+G+V E ++A+
Sbjct: 8 RCFVGGLSWNTTDKGLEEEFRHFGNVLEAKVIVDKETGHSRGFGFVNFGDERSMEEAIER 67
Query: 119 MNGKLLDGRVIFVDNVRP 136
++GK LDGR I V+ +P
Sbjct: 68 LHGKELDGRPITVNRAKP 85
>gi|42522915|ref|NP_968295.1| RNA-binding protein [Bdellovibrio bacteriovorus HD100]
gi|426403373|ref|YP_007022344.1| RNA-binding protein [Bdellovibrio bacteriovorus str. Tiberius]
gi|39574111|emb|CAE79288.1| putative RNA-binding protein [Bdellovibrio bacteriovorus HD100]
gi|425860041|gb|AFY01077.1| putative RNA-binding protein [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 116
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+S + LAD F++FG V A I++D RSKG+ +V ST++EA A+ +NG
Sbjct: 9 NLSYSLDDQSLADTFAEFGNVESARIVIDRETGRSKGFAFVEMSTDDEAATAIAKLNGVE 68
Query: 124 LDGRVIFVDNVRP 136
L GR + V +P
Sbjct: 69 LMGRAMNVSEAKP 81
>gi|154175004|ref|YP_001407864.1| nicotinate phosphoribosyltransferase [Campylobacter curvus 525.92]
gi|402547017|ref|ZP_10843890.1| hypothetical protein HMPREF1139_0586 [Campylobacter sp. FOBRC14]
gi|153793162|gb|EAU00743.2| nicotinate phosphoribosyltransferase [Campylobacter curvus 525.92]
gi|401016852|gb|EJP75615.1| hypothetical protein HMPREF1139_0586 [Campylobacter sp. FOBRC14]
Length = 65
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
+ +AF+QFG+V A I+ D NRSKG+G+V E Q+A+ +N K L GR + V+
Sbjct: 1 MKEAFAQFGEVKRAKIVKDRDTNRSKGFGFVEMDDANEGQRAIDALNDKELGGRTLRVNE 60
Query: 134 VRPS 137
RP
Sbjct: 61 ARPK 64
>gi|115454617|ref|NP_001050909.1| Os03g0681900 [Oryza sativa Japonica Group]
gi|31712074|gb|AAP68379.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|108710427|gb|ABF98222.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113549380|dbj|BAF12823.1| Os03g0681900 [Oryza sativa Japonica Group]
gi|215692670|dbj|BAG88090.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692827|dbj|BAG88216.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625569|gb|EEE59701.1| hypothetical protein OsJ_12125 [Oryza sativa Japonica Group]
Length = 308
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T + LADAF +FG+V +A I+++ R +G+G+VT S E A+ +M+ +
Sbjct: 13 GLSFHTDERKLADAFRRFGKVVDAQIMLERHTQRHRGFGFVTFSDPEAVDSAIKEMHCQE 72
Query: 124 LDGRVIFVDNVRPSRRYNTD 143
LDGR I V+ P + NTD
Sbjct: 73 LDGRTISVNKAEP--KMNTD 90
>gi|326931688|ref|XP_003211958.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 39-like
[Meleagris gallopavo]
Length = 571
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 305 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 364
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 365 LAGRPMKVGHV----TERTDASSA 384
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L + FS FG ++MD RS+G+G+V EEAQKA+ +MNGK ++GR+++V
Sbjct: 207 LKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVG- 264
Query: 134 VRPSRRYNTDASLARQ 149
R +R L R+
Sbjct: 265 -RAQKRIERQGELKRK 279
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D FS FG + ++ D + S+GYG+V T+E A +A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSAFGDILSCKVVCD--EYGSRGYGFVHFETQEAANRAIQTMNGMLLNDR 166
Query: 128 VIFVDNVRPSRR 139
+FV + + SRR
Sbjct: 167 KVFVGHFK-SRR 177
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
L FS +G +T ++ + G SKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 310 LRKEFSPYGTITSTKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>gi|238010804|gb|ACR36437.1| unknown [Zea mays]
Length = 262
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 12 IQQFNSYFTEDSLLSFSSKPYQVVNYFSLHCIVRPSSDLIMQLVNVSFWRCISVSFSTTK 71
+ QFN Y + L +S P + S RP D V ++S+
Sbjct: 139 VDQFNGYVLDGRSLRVNSGPPPPRDRSS-RSPQRPRGDANRVYVG-------NLSWGVDN 190
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
LA+ FS+ G+V EA II D RS+G+G+VT + EE + A+ +++G LDGR I V
Sbjct: 191 SALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDGADLDGRQIRV 250
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ FS LA F Q G V +I D RS+G+G+VT S+ EE + A+ NG +
Sbjct: 87 NLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQFNGYV 146
Query: 124 LDGRVIFVDNVRPSRRYNTDASLAR 148
LDGR + V++ P R + S R
Sbjct: 147 LDGRSLRVNSGPPPPRDRSSRSPQR 171
>gi|110597824|ref|ZP_01386107.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
ferrooxidans DSM 13031]
gi|110340549|gb|EAT59032.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
ferrooxidans DSM 13031]
Length = 90
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S T+ L + F +FG+V+ A++I D RSKG+G+V + + EA A+ D+N
Sbjct: 7 NLDYSVTEADLRETFGEFGEVSSASVINDKFTGRSKGFGFVEMANDAEAASAIADLNDSD 66
Query: 124 LDGRVIFVDNVRP 136
L+GR I V+ +P
Sbjct: 67 LNGRTIKVNEAKP 79
>gi|377345277|emb|CCG00961.1| protein containing RNA recognition motif domain [uncultured
Flavobacteriia bacterium]
Length = 102
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 12/93 (12%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ + T+E L F Q+G+V TI+ D+ + KGYG+V S+ E QKA++ +N K
Sbjct: 7 NIDYKITEEELQALFEQYGEVKSVTILKDMDDQKPKGYGFVLMSSNYEGQKAILSLNNKK 66
Query: 124 LDGRVIFVDNVRPSRRYNTDASLARQPAQSPEE 156
++ R + V RP +P + PE+
Sbjct: 67 INDRSLSVQEARP------------KPGEEPEK 87
>gi|284108895|ref|ZP_06386469.1| RNP-1 like RNA-binding protein [Candidatus Poribacteria sp. WGA-A3]
gi|283829840|gb|EFC34132.1| RNP-1 like RNA-binding protein [Candidatus Poribacteria sp. WGA-A3]
Length = 90
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+STT + L D F+Q G V A ++ D RS+G+G+V + EEA +A+ +NG
Sbjct: 9 NLSYSTTDQELQDLFAQHGTVQSANVVTDRYTGRSRGFGFVEMGSGEEAGQAIEALNGTD 68
Query: 124 LDGRVIFVDNVRPSRR 139
GR + V+ RP +
Sbjct: 69 FQGRSLVVNEARPKEK 84
>gi|332019312|gb|EGI59819.1| RNA-binding protein 39 [Acromyrmex echinatior]
Length = 528
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 273 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALEQLNGFE 332
Query: 124 LDGRVIFVDNV 134
L GR + V NV
Sbjct: 333 LAGRPMKVGNV 343
>gi|197632397|gb|ACH70922.1| elongation factor-1 delta-1 [Salmo salar]
Length = 203
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+ F T + L +AFS++G + + ++ D RS+G+G+VT E+A+ A+ MNGK
Sbjct: 11 GLCFDTDETSLEEAFSKYGNIAKVDVVRDRETQRSRGFGFVTFENPEDAKDAMAAMNGKS 70
Query: 124 LDGRVIFVD 132
+DGR+I VD
Sbjct: 71 VDGRMIRVD 79
>gi|193785136|dbj|BAG54289.1| unnamed protein product [Homo sapiens]
Length = 506
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 232 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 291
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 292 LAGRPMKVGHV----TERTDASSA 311
>gi|442771473|gb|AGC72159.1| RNA-binding protein [uncultured bacterium A1Q1_fos_560]
Length = 98
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+ +STT++ L+D F+ G VT A II D +S+G+G+V S + EAQ A+ +NG
Sbjct: 9 GLPYSTTEQQLSDLFAVHGAVTSARIITDKFTGQSRGFGFVEMSGDSEAQAAINALNGTQ 68
Query: 124 LDGRVIFVDNVRP 136
GR + V+ RP
Sbjct: 69 FGGRTLTVNEARP 81
>gi|115449577|ref|NP_001048500.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|47847880|dbj|BAD21673.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|47848169|dbj|BAD21996.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|113538031|dbj|BAF10414.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|125584133|gb|EAZ25064.1| hypothetical protein OsJ_08857 [Oryza sativa Japonica Group]
gi|215695143|dbj|BAG90334.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737594|dbj|BAG96724.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 316
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++ T EML + F + G V A ++ D RS+GYG+V ST+EE +AL +NG
Sbjct: 242 NLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTE 301
Query: 124 LDGRVIFVD 132
L+GR I V+
Sbjct: 302 LEGREIRVN 310
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 89 IIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI---FVDNVRP 136
++ D RS+G+ +VT ST E+ ++ + +++G L GR + F D +P
Sbjct: 176 VLYDRATGRSRGFAFVTMSTIEDCEQVIKNLDGSLYSGRTMRVNFADKPKP 226
>gi|417411216|gb|JAA52053.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Desmodus rotundus]
Length = 499
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 225 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 284
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 285 LAGRPMKVGHV----TERTDASSA 304
>gi|242215700|ref|XP_002473663.1| predicted protein [Postia placenta Mad-698-R]
gi|220727201|gb|EED81127.1| predicted protein [Postia placenta Mad-698-R]
Length = 638
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S TT+ L D FS++G+V + I+ D +RS+G+G++T ST +EA + + ++NG L
Sbjct: 60 LSIRTTERDLDDEFSRYGRVEKVVIVYDQRSDRSRGFGFITMSTTDEAGRCIKELNGVDL 119
Query: 125 DGRVIFVD 132
+GR I VD
Sbjct: 120 NGRRIRVD 127
>gi|307180960|gb|EFN68748.1| RNA-binding protein 39 [Camponotus floridanus]
Length = 529
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +NG
Sbjct: 274 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALEQLNGFE 333
Query: 124 LDGRVIFVDNV 134
L GR + V NV
Sbjct: 334 LAGRPMKVGNV 344
>gi|256086132|ref|XP_002579259.1| nucleolysin tia-1 [Schistosoma mansoni]
gi|353232225|emb|CCD79580.1| putative nucleolysin tia-1 [Schistosoma mansoni]
Length = 547
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
E L AFS FG +TE II D+ + KGYG+V +T +EA++A+ MNG+++ R I
Sbjct: 47 ETLLAAFSNFGTITECKIIKDMHTQKPKGYGFVAYATRQEAERAIRIMNGQIIGTRAI 104
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
T+++L D+F QFG++ E I D KG+ ++ + A +A+V M+GK++
Sbjct: 150 TEKLLQDSFKQFGEIKEIRIFKD------KGFSFIRFDSHVAATQAIVTMHGKIV 198
>gi|170098488|ref|XP_001880463.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644901|gb|EDR09150.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 154
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++TT + L AFS+FGQV ++ ++ D RS+G+G+VT S+ +EA A+ +N +
Sbjct: 9 NLSWNTTDDTLRQAFSEFGQVLDSIVMRDRDTGRSRGFGFVTFSSGQEADAAIGGLNEQE 68
Query: 124 LDGRVIFVD 132
LDGR I V+
Sbjct: 69 LDGRRIKVN 77
>gi|432858816|ref|XP_004068953.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Oryzias latipes]
Length = 529
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 258 SLHFNITEDMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFE 317
Query: 124 LDGRVIFVDNV 134
L GR + V +V
Sbjct: 318 LAGRPMKVGHV 328
>gi|296199709|ref|XP_002747282.1| PREDICTED: RNA-binding protein 39 isoform 5 [Callithrix jacchus]
Length = 504
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 230 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 289
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 290 LAGRPMKVGHV----TERTDASSA 309
>gi|194386036|dbj|BAG59582.1| unnamed protein product [Homo sapiens]
Length = 503
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 229 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 288
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 289 LAGRPMKVGHV----TERTDASSA 308
>gi|357473273|ref|XP_003606921.1| Glycine-rich RNA binding protein [Medicago truncatula]
gi|355507976|gb|AES89118.1| Glycine-rich RNA binding protein [Medicago truncatula]
Length = 164
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T E L AFSQ+G++ ++ II D RS+G+G+VT + E+ + A+
Sbjct: 8 YRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIE 67
Query: 118 DMNGKLLDGRVIFVDNVRP 136
MNG+ +DGR I V+ +
Sbjct: 68 GMNGQDMDGRNITVNEAQS 86
>gi|426241402|ref|XP_004014580.1| PREDICTED: RNA-binding protein 39 isoform 1 [Ovis aries]
Length = 530
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 316 LTGRPMKVGHV----TERTDASSA 335
>gi|417411155|gb|JAA52027.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Desmodus rotundus]
Length = 491
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 223 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 282
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 283 LAGRPMKVGHV----TERTDASSA 302
>gi|372269331|ref|ZP_09505379.1| RNA-binding region RNP-1 (RNA recognition motif) [Alteromonas sp.
S89]
Length = 89
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 47/72 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++++ T + L +AF FG+++ AT+I D RSKG+G+V ++EA+KA+ +MN +
Sbjct: 7 NLAYGVTSDELHEAFGAFGEISRATVITDRETGRSKGFGFVEMPNDDEARKAIEEMNDQP 66
Query: 124 LDGRVIFVDNVR 135
L GR I V+ +
Sbjct: 67 LSGRNIRVNEAK 78
>gi|147900472|ref|NP_001086350.1| MGC81970 protein [Xenopus laevis]
gi|49522239|gb|AAH75146.1| MGC81970 protein [Xenopus laevis]
Length = 512
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 229 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 288
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 289 LAGRPMKVGHV----TERTDASNA 308
>gi|426241404|ref|XP_004014581.1| PREDICTED: RNA-binding protein 39 isoform 2 [Ovis aries]
Length = 524
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 316 LTGRPMKVGHV----TERTDASSA 335
>gi|281346065|gb|EFB21649.1| hypothetical protein PANDA_004543 [Ailuropoda melanoleuca]
Length = 497
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 223 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 282
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 283 LAGRPMKVGHV----TERTDASSA 302
>gi|395505312|ref|XP_003756986.1| PREDICTED: RNA-binding protein 39 [Sarcophilus harrisii]
Length = 557
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 289 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 348
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 349 LAGRPMKVGHV----TERTDASSA 368
>gi|209737234|gb|ACI69486.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 146
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+ F T + L +AFS++G + + ++ D RS+G+G+VT E+A+ A+ MNGK
Sbjct: 11 GLCFDTDETSLEEAFSKYGNIAKVDVVRDRETQRSRGFGFVTFENPEDAKDAMAAMNGKS 70
Query: 124 LDGRVIFVD 132
+DGR+I VD
Sbjct: 71 VDGRMIRVD 79
>gi|426241410|ref|XP_004014584.1| PREDICTED: RNA-binding protein 39 isoform 5 [Ovis aries]
Length = 530
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 262 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 321
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 322 LTGRPMKVGHV----TERTDASSA 341
>gi|390602556|gb|EIN11949.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 161
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 46/69 (66%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++TT E L AFS +GQ+ ++ ++ D RS+G+G+VT S+ EA A+ +N +
Sbjct: 9 NLSWNTTDESLRAAFSHYGQILDSIVMRDRDTGRSRGFGFVTFSSSAEADNAIASLNEQD 68
Query: 124 LDGRVIFVD 132
LDGR I V+
Sbjct: 69 LDGRRIRVN 77
>gi|328948645|ref|YP_004365982.1| RNP-1 like RNA-binding protein [Treponema succinifaciens DSM 2489]
gi|328448969|gb|AEB14685.1| RNP-1 like RNA-binding protein [Treponema succinifaciens DSM 2489]
Length = 109
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++TT++ L+ FS +G V ATII+D N+SKG+G+V E KA+ + GK
Sbjct: 9 NLSYATTQDTLSSLFSAYGNVVSATIIIDRDTNQSKGFGFVEMEDPAETDKAIAKLAGKE 68
Query: 124 LDGRVIFVD 132
+DGR I V+
Sbjct: 69 VDGRKIRVN 77
>gi|209154454|gb|ACI33459.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 206
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+ F T + L +AFS++G + + ++ D RS+G+G+VT E+A+ A+ MNGK
Sbjct: 11 GLCFDTDETSLEEAFSKYGNIAKVDVVRDRETQRSRGFGFVTFENPEDAKDAMAAMNGKS 70
Query: 124 LDGRVIFVD 132
+DGR+I VD
Sbjct: 71 VDGRMIRVD 79
>gi|406883265|gb|EKD30895.1| hypothetical protein ACD_77C00459G0025 [uncultured bacterium]
Length = 87
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+SF KE LA+ F+ +G+V A II + RSKGYG+V EEE A+ +NG
Sbjct: 7 SLSFRAKKEDLAELFAPYGEVISARIIFNRETRRSKGYGFVEMPNEEEGNAAIAALNGSD 66
Query: 124 LDGRVIFV--DNVRPSR 138
GR I V N RP R
Sbjct: 67 HMGRTINVAIANDRPPR 83
>gi|194384132|dbj|BAG64839.1| unnamed protein product [Homo sapiens]
Length = 521
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 247 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 306
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 307 LAGRPMKVGHV----TERTDASSA 326
>gi|440473946|gb|ELQ42715.1| hypothetical protein OOU_Y34scaffold00194g28 [Magnaporthe oryzae
Y34]
gi|440489138|gb|ELQ68816.1| hypothetical protein OOW_P131scaffold00217g29 [Magnaporthe oryzae
P131]
Length = 182
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKAL 116
++ W +++ T + L F ++G V EA ++ D RS+G+G+V + E++AQKA+
Sbjct: 2 LTVWVGSGLAWHTEEGTLRQKFEEYGVVEEAVVVKDRDTGRSRGFGFVRYTNEDDAQKAI 61
Query: 117 VDMNGKLLDGRVIFVDNV 134
MN DGR I VD
Sbjct: 62 TAMNNVEFDGRTIRVDKA 79
>gi|184185564|gb|ACC68962.1| RNA binding motif protein 39 isoform a (predicted) [Rhinolophus
ferrumequinum]
Length = 498
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 316 LAGRPMKVGHV----TERTDASSA 335
>gi|259089109|ref|NP_001158591.1| cold inducible RNA binding protein [Oncorhynchus mykiss]
gi|225705082|gb|ACO08387.1| Cold-inducible RNA-binding protein [Oncorhynchus mykiss]
Length = 209
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+ F T + L +AFS++G + + ++ D RS+G+G+VT E+A+ A+ MNGK
Sbjct: 11 GLCFDTDETSLEEAFSKYGNIAKVDVVRDRETRRSRGFGFVTFENPEDAKDAMAAMNGKS 70
Query: 124 LDGRVIFVDNV 134
+DGR+I VD
Sbjct: 71 VDGRMIRVDEA 81
>gi|52545994|emb|CAH18281.2| hypothetical protein [Homo sapiens]
Length = 513
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 239 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 298
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 299 LAGRPMKVGHV----TERTDASSA 318
>gi|13278367|gb|AAH04000.1| Rbm39 protein [Mus musculus]
Length = 429
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 155 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 214
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 215 LAGRPMKVGHV----TERTDASSA 234
>gi|255553947|ref|XP_002518014.1| RNA binding protein, putative [Ricinus communis]
gi|223542996|gb|EEF44532.1| RNA binding protein, putative [Ricinus communis]
Length = 267
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ T KE L + F QFG++ EA +I D RSKGYG+VT E A++A VD + +
Sbjct: 25 GLAWETHKETLKNYFQQFGEILEAVVIFDKNTGRSKGYGFVTFKEAEAARRACVDSS-PV 83
Query: 124 LDGR 127
+DGR
Sbjct: 84 IDGR 87
>gi|148674239|gb|EDL06186.1| RNA binding motif protein 39, isoform CRA_d [Mus musculus]
Length = 507
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 239 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 298
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 299 LAGRPMKVGHV----TERTDASSA 318
>gi|222612603|gb|EEE50735.1| hypothetical protein OsJ_31052 [Oryza sativa Japonica Group]
Length = 118
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 8/73 (10%)
Query: 61 RCIS--------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEA 112
RC+S +S+ T + L +AF+ +G+V EA +I+D RS+G+G+VT ++ +EA
Sbjct: 26 RCMSSSKLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEA 85
Query: 113 QKALVDMNGKLLD 125
A+ M+GK++D
Sbjct: 86 AAAITGMDGKVMD 98
>gi|426241408|ref|XP_004014583.1| PREDICTED: RNA-binding protein 39 isoform 4 [Ovis aries]
Length = 508
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 234 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 293
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 294 LTGRPMKVGHV----TERTDASSA 313
>gi|312282683|dbj|BAJ34207.1| unnamed protein product [Thellungiella halophila]
Length = 166
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L FSQFG+V ++ II D RS+G+G+VT E+ + A+
Sbjct: 7 YRCFVGGLAWATADADLERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMRDAIE 66
Query: 118 DMNGKLLDGRVIFVD 132
+MNGK LDGR I V+
Sbjct: 67 EMNGKELDGRSITVN 81
>gi|126291198|ref|XP_001371677.1| PREDICTED: RNA-binding protein 39 isoform 2 [Monodelphis domestica]
Length = 533
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 316 LAGRPMKVGHV----TERTDASSA 335
>gi|74179655|dbj|BAE22477.1| unnamed protein product [Mus musculus]
Length = 521
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 253 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 312
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 313 LAGRPMKVGHV----TERTDASSA 332
>gi|356519721|ref|XP_003528518.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Glycine max]
Length = 137
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+S + L +AFS FG VTE TI+ D RS+G+G+V S E++A+ A M+GK
Sbjct: 44 GLSWSVDHKSLKEAFSSFGDVTEVTIVYDKDSGRSRGFGFVIFSNEDDAKCAKDAMDGKA 103
Query: 124 LDGRVIFVD 132
L GR + ++
Sbjct: 104 LLGRPLRIN 112
>gi|410953912|ref|XP_003983612.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 39 [Felis
catus]
Length = 523
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 255 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 314
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 315 LAGRPMKVGHV----TERTDASSA 334
>gi|226505736|ref|NP_001150149.1| LOC100283778 [Zea mays]
gi|195605606|gb|ACG24633.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195606158|gb|ACG24909.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195637130|gb|ACG38033.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195645710|gb|ACG42323.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|238009788|gb|ACR35929.1| unknown [Zea mays]
gi|413951537|gb|AFW84186.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 156
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD- 132
L +AFS FG+VTEA +I D RS+G+G+V S + A++A+ M+GK +DGR + V+
Sbjct: 53 LREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNM 112
Query: 133 -NVRPS 137
N RP+
Sbjct: 113 ANERPA 118
>gi|119596572|gb|EAW76166.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_e [Homo
sapiens]
Length = 445
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 316 LAGRPMKVGHV----TERTDASSA 335
>gi|4757926|ref|NP_004893.1| RNA-binding protein 39 isoform b [Homo sapiens]
gi|197097940|ref|NP_001125339.1| RNA-binding protein 39 [Pongo abelii]
gi|149733223|ref|XP_001501876.1| PREDICTED: RNA-binding protein 39 isoform 2 [Equus caballus]
gi|194044529|ref|XP_001925282.1| PREDICTED: RNA-binding protein 39 isoform 2 [Sus scrofa]
gi|296199701|ref|XP_002747278.1| PREDICTED: RNA-binding protein 39 isoform 1 [Callithrix jacchus]
gi|301762104|ref|XP_002916459.1| PREDICTED: RNA-binding protein 39-like [Ailuropoda melanoleuca]
gi|332858226|ref|XP_514808.3| PREDICTED: uncharacterized protein LOC458443 isoform 5 [Pan
troglodytes]
gi|344279921|ref|XP_003411734.1| PREDICTED: RNA-binding protein 39 isoform 2 [Loxodonta africana]
gi|345789988|ref|XP_865124.2| PREDICTED: RNA-binding protein 39 isoform 12 [Canis lupus
familiaris]
gi|354477984|ref|XP_003501197.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Cricetulus
griseus]
gi|426391509|ref|XP_004062115.1| PREDICTED: RNA-binding protein 39 isoform 2 [Gorilla gorilla
gorilla]
gi|75070825|sp|Q5RC80.1|RBM39_PONAB RecName: Full=RNA-binding protein 39; AltName: Full=RNA-binding
motif protein 39
gi|405192|gb|AAA16346.1| splicing factor [Homo sapiens]
gi|55727753|emb|CAH90627.1| hypothetical protein [Pongo abelii]
gi|119596568|gb|EAW76162.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_c [Homo
sapiens]
gi|119596569|gb|EAW76163.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_c [Homo
sapiens]
gi|296480931|tpg|DAA23046.1| TPA: RNA binding motif protein 39 [Bos taurus]
gi|307686241|dbj|BAJ21051.1| RNA binding motif protein 39 [synthetic construct]
gi|344246681|gb|EGW02785.1| RNA-binding protein 39 [Cricetulus griseus]
gi|380783275|gb|AFE63513.1| RNA-binding protein 39 isoform b [Macaca mulatta]
gi|383408127|gb|AFH27277.1| RNA-binding protein 39 isoform b [Macaca mulatta]
gi|384939256|gb|AFI33233.1| RNA-binding protein 39 isoform b [Macaca mulatta]
gi|410218748|gb|JAA06593.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410255438|gb|JAA15686.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410292902|gb|JAA25051.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410350855|gb|JAA42031.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410350863|gb|JAA42035.1| RNA binding motif protein 39 [Pan troglodytes]
Length = 524
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 316 LAGRPMKVGHV----TERTDASSA 335
>gi|449265754|gb|EMC76900.1| RNA-binding protein 39, partial [Columba livia]
Length = 423
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 157 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 216
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 217 LAGRPMKVGHV----TERTDASSA 236
>gi|410080926|ref|XP_003958043.1| hypothetical protein KAFR_0F03120 [Kazachstania africana CBS 2517]
gi|372464630|emb|CCF58908.1| hypothetical protein KAFR_0F03120 [Kazachstania africana CBS 2517]
Length = 412
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S+S E L + F G V A +I + G +RS+GYGYV +E A+KA+ +M+GK +
Sbjct: 172 LSWSIDDEWLKNEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKEYAEKAVKEMHGKEI 231
Query: 125 DGRVIFVD 132
DGR I D
Sbjct: 232 DGREINCD 239
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF+ ++ +++ FS+FG++ I + KG+GYV + E+A+KAL + G+
Sbjct: 271 NLSFNADRDNISEMFSKFGEIVSVRIPTHPETEQPKGFGYVQYTNVEDAKKALDALQGEY 330
Query: 124 LDGRVIFVD 132
+D R + +D
Sbjct: 331 IDNRPVRLD 339
>gi|328850756|gb|EGF99917.1| hypothetical protein MELLADRAFT_118186 [Melampsora larici-populina
98AG31]
Length = 667
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S++ + L F +FG+V A +I + G RSKG+GYV ++ E+A+KA+ M G +
Sbjct: 408 LSWNVDDDWLKKEFEKFGEVISARVITERGTERSKGFGYVDFASPEDARKAVEAMAGTEI 467
Query: 125 DGRVIFVD 132
DGR I VD
Sbjct: 468 DGRTINVD 475
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+ FS T++ + +AFS++G + + D R KG+GYV +T+E A A+ G
Sbjct: 508 LPFSATQDSVYEAFSEYGDINSVRLPTDPETERIKGFGYVEFATQEAATAAVNVGRG--- 564
Query: 125 DGRVIFVDNVRPSRRYNTDASLARQP 150
DG I++D R+ D S R P
Sbjct: 565 DG--IYIDQ----RQARLDYSQPRAP 584
>gi|35493811|ref|NP_909122.1| RNA-binding protein 39 isoform a [Homo sapiens]
gi|281182530|ref|NP_001162566.1| RNA-binding protein 39 [Papio anubis]
gi|284004921|ref|NP_001164806.1| RNA-binding protein 39 [Oryctolagus cuniculus]
gi|149733225|ref|XP_001501869.1| PREDICTED: RNA-binding protein 39 isoform 1 [Equus caballus]
gi|296199703|ref|XP_002747279.1| PREDICTED: RNA-binding protein 39 isoform 2 [Callithrix jacchus]
gi|332858224|ref|XP_003316931.1| PREDICTED: uncharacterized protein LOC458443 isoform 1 [Pan
troglodytes]
gi|335304742|ref|XP_003360012.1| PREDICTED: RNA-binding protein 39 [Sus scrofa]
gi|344279919|ref|XP_003411733.1| PREDICTED: RNA-binding protein 39 isoform 1 [Loxodonta africana]
gi|345789986|ref|XP_864959.2| PREDICTED: RNA-binding protein 39 isoform 3 [Canis lupus
familiaris]
gi|354477982|ref|XP_003501196.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Cricetulus
griseus]
gi|397523808|ref|XP_003831910.1| PREDICTED: RNA-binding protein 39 [Pan paniscus]
gi|426391507|ref|XP_004062114.1| PREDICTED: RNA-binding protein 39 isoform 1 [Gorilla gorilla
gorilla]
gi|28201880|sp|Q14498.2|RBM39_HUMAN RecName: Full=RNA-binding protein 39; AltName: Full=Hepatocellular
carcinoma protein 1; AltName: Full=RNA-binding motif
protein 39; AltName: Full=RNA-binding region-containing
protein 2; AltName: Full=Splicing factor HCC1
gi|405194|gb|AAA16347.1| splicing factor [Homo sapiens]
gi|119596565|gb|EAW76159.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_a [Homo
sapiens]
gi|119596567|gb|EAW76161.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_a [Homo
sapiens]
gi|146327034|gb|AAI41836.1| RNA binding motif protein 39 [Homo sapiens]
gi|164623752|gb|ABY64678.1| RNA binding motif protein 39, isoform 1 (predicted) [Papio anubis]
gi|165971473|gb|AAI58173.1| RNA binding motif protein 39 [Homo sapiens]
gi|166831598|gb|ABY90123.1| RNA binding motif protein 39 isoform a (predicted) [Callithrix
jacchus]
gi|169731519|gb|ACA64891.1| RNA binding motif protein 39 isoform a (predicted) [Callicebus
moloch]
gi|197215647|gb|ACH53039.1| RNA binding motif protein 39 isoform a (predicted) [Otolemur
garnettii]
gi|217038339|gb|ACJ76632.1| RNA binding motif protein 39 isoform a (predicted) [Oryctolagus
cuniculus]
gi|229368730|gb|ACQ63013.1| RNA binding motif protein 39 isoform a (predicted) [Dasypus
novemcinctus]
gi|351702535|gb|EHB05454.1| RNA-binding protein 39 [Heterocephalus glaber]
gi|380783277|gb|AFE63514.1| RNA-binding protein 39 isoform a [Macaca mulatta]
gi|383408125|gb|AFH27276.1| RNA-binding protein 39 isoform a [Macaca mulatta]
gi|384939254|gb|AFI33232.1| RNA-binding protein 39 isoform a [Macaca mulatta]
gi|410218746|gb|JAA06592.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410255434|gb|JAA15684.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410292900|gb|JAA25050.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410292904|gb|JAA25052.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410350859|gb|JAA42033.1| RNA binding motif protein 39 [Pan troglodytes]
gi|440902514|gb|ELR53299.1| RNA-binding protein 39 [Bos grunniens mutus]
Length = 530
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 316 LAGRPMKVGHV----TERTDASSA 335
>gi|355784531|gb|EHH65382.1| RNA-binding motif protein 39 [Macaca fascicularis]
Length = 530
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 316 LAGRPMKVGHV----TERTDASSA 335
>gi|121534066|ref|ZP_01665891.1| RNP-1 like RNA-binding protein [Thermosinus carboxydivorans Nor1]
gi|121307169|gb|EAX48086.1| RNP-1 like RNA-binding protein [Thermosinus carboxydivorans Nor1]
Length = 83
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ + TT+ LADAF +G V + IIMD RS+G+G+V + +E+A+K + MNG
Sbjct: 9 NLPWGTTEAALADAFRPYGTVYSSRIIMDKETGRSRGFGFVEVA-DEDAEKMVTAMNGSE 67
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ +P
Sbjct: 68 LGGRQIVVNEAKP 80
>gi|432858814|ref|XP_004068952.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Oryzias latipes]
Length = 502
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 231 SLHFNITEDMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFE 290
Query: 124 LDGRVIFVDNV 134
L GR + V +V
Sbjct: 291 LAGRPMKVGHV 301
>gi|389741761|gb|EIM82949.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 145
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 47/69 (68%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++TT + L AFS+FG + ++ ++ D RS+G+G+VT T EEA A+ ++N +
Sbjct: 9 NLSWNTTDDTLRQAFSEFGAILDSIVMRDRETGRSRGFGFVTFGTPEEADAAINNLNEQE 68
Query: 124 LDGRVIFVD 132
LDGR I V+
Sbjct: 69 LDGRRIRVN 77
>gi|330688445|ref|NP_001193433.1| RNA-binding protein 39 [Bos taurus]
Length = 530
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 262 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 321
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 322 LAGRPMKVGHV----TERTDASSA 341
>gi|297802026|ref|XP_002868897.1| hypothetical protein ARALYDRAFT_490700 [Arabidopsis lyrata subsp.
lyrata]
gi|297314733|gb|EFH45156.1| hypothetical protein ARALYDRAFT_490700 [Arabidopsis lyrata subsp.
lyrata]
Length = 164
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L FSQFG V ++ II D RS+G+G+VT E+ + A+
Sbjct: 6 YRCFVGGLAWATQDHDLERTFSQFGDVLDSKIINDRETGRSRGFGFVTFKDEKAMRDAIE 65
Query: 118 DMNGKLLDGRVIFVD 132
+MNGK LDGR I V+
Sbjct: 66 EMNGKELDGRTITVN 80
>gi|88682991|gb|AAI05542.1| RBM39 protein [Bos taurus]
Length = 528
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 260 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 319
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 320 LAGRPMKVGHV----TERTDASSA 339
>gi|61557287|ref|NP_001013225.1| RNA-binding protein 39 [Rattus norvegicus]
gi|392346874|ref|XP_003749654.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Rattus
norvegicus]
gi|60552170|gb|AAH91394.1| RNA binding motif protein 39 [Rattus norvegicus]
gi|74196119|dbj|BAE32977.1| unnamed protein product [Mus musculus]
gi|149030834|gb|EDL85861.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_f [Rattus
norvegicus]
Length = 524
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 316 LAGRPMKVGHV----TERTDASSA 335
>gi|332249061|ref|XP_003273679.1| PREDICTED: RNA-binding protein 39 [Nomascus leucogenys]
Length = 432
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 164 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 223
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 224 LAGRPMKVGHV----TERTDASSA 243
>gi|118403314|ref|NP_573505.2| RNA-binding protein 39 [Mus musculus]
gi|392346872|ref|XP_003749653.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Rattus
norvegicus]
gi|341941811|sp|Q8VH51.2|RBM39_MOUSE RecName: Full=RNA-binding protein 39; AltName: Full=Coactivator of
activating protein 1 and estrogen receptors;
Short=Coactivator of AP-1 and ERs; AltName:
Full=RNA-binding motif protein 39; AltName:
Full=RNA-binding region-containing protein 2; AltName:
Full=Transcription coactivator CAPER
gi|55991480|gb|AAH86645.1| RNA binding motif protein 39 [Mus musculus]
gi|74151058|dbj|BAE27657.1| unnamed protein product [Mus musculus]
gi|148674237|gb|EDL06184.1| RNA binding motif protein 39, isoform CRA_b [Mus musculus]
Length = 530
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 316 LAGRPMKVGHV----TERTDASSA 335
>gi|325279880|ref|YP_004252422.1| RNP-1 like RNA-binding protein [Odoribacter splanchnicus DSM 20712]
gi|324311689|gb|ADY32242.1| RNP-1 like RNA-binding protein [Odoribacter splanchnicus DSM 20712]
Length = 99
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ TT L + FS++G+++ A II D RS+G+G+V + + E QKA+ ++NG
Sbjct: 7 GLSYGTTDADLNELFSEYGEISSAKIISDRETGRSRGFGFVEMTNDTEGQKAIDELNGAE 66
Query: 124 LDGRVIFVDNVRP 136
D +VI V RP
Sbjct: 67 YDHKVIAVSIARP 79
>gi|357111298|ref|XP_003557451.1| PREDICTED: uncharacterized protein LOC100823909 [Brachypodium
distachyon]
Length = 258
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ TT+ L AFS FG+V E ++ + RS+G+G+VT S A A+ +M+
Sbjct: 13 GLSWDTTERTLERAFSDFGKVIETQVVTERDTGRSRGFGFVTFSEPRAADAAIREMHNGE 72
Query: 124 LDGRVIFVDNVRPSRRYNTD 143
LDGR I V+ +P R NTD
Sbjct: 73 LDGRTISVNKAQP--RMNTD 90
>gi|17063213|gb|AAL32373.1| transcription coactivator CAPER [Mus musculus]
Length = 530
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 316 LAGRPMKVGHV----TERTDASSA 335
>gi|308475439|ref|XP_003099938.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
gi|308266205|gb|EFP10158.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
Length = 408
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 63 ISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGK 122
+S +TK L +AF FG+V+EA II D N++KGYG+V+ E+A++A+ MNG+
Sbjct: 139 LSAEIDSTK--LREAFLPFGEVSEAKIIRDNATNKAKGYGFVSYPRREDAERAIEQMNGQ 196
Query: 123 LLDGRVI 129
L R I
Sbjct: 197 WLGRRTI 203
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S T++ + F +FGQ+ E I +S+GY +V +E A +A+V MN + + G+
Sbjct: 266 SLTEDEIRRGFERFGQIVEVRIF------KSQGYAFVKFEQKESAARAIVQMNNQDVSGQ 319
Query: 128 VI 129
++
Sbjct: 320 MV 321
>gi|302756609|ref|XP_002961728.1| hypothetical protein SELMODRAFT_140819 [Selaginella moellendorffii]
gi|300170387|gb|EFJ36988.1| hypothetical protein SELMODRAFT_140819 [Selaginella moellendorffii]
Length = 130
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 52 MQLVNVSFWRCI---SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSST 108
MQ+++ S+ + +++ L AF+ +G+VTEA +IMD RS+G+G+VT
Sbjct: 1 MQILSRSYASKLFIGGLAWGVDDGTLRTAFANYGEVTEARVIMDRETGRSRGFGFVTFEN 60
Query: 109 EEEAQKALVDMNGKLLDGRVIFVDNV--RPS 137
+ EA+ A+ M+G L GR I VD RPS
Sbjct: 61 DNEAKAAVQGMDGHELGGRSIRVDYASDRPS 91
>gi|426241406|ref|XP_004014582.1| PREDICTED: RNA-binding protein 39 isoform 3 [Ovis aries]
Length = 502
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 234 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 293
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 294 LTGRPMKVGHV----TERTDASSA 313
>gi|326487468|dbj|BAJ89718.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510625|dbj|BAJ87529.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518508|dbj|BAJ88283.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520529|dbj|BAK07523.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326527353|dbj|BAK04618.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 161
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T + L +AFS++G V ++ II D RS+G+G+VT +++E ++A+
Sbjct: 6 YRCFVGGLAWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIE 65
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 66 AMNGQDLDGRNITVN 80
>gi|118100450|ref|XP_425690.2| PREDICTED: RNA-binding protein 39 [Gallus gallus]
gi|363741409|ref|XP_003642487.1| PREDICTED: RNA-binding protein 39-like [Gallus gallus]
Length = 522
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 316 LAGRPMKVGHV----TERTDASSA 335
>gi|114145394|dbj|BAF30986.1| glycine-rich RNA-binding protein [Triticum aestivum]
Length = 163
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T + L +AFS++G V ++ II D RS+G+G+VT +++E ++A+
Sbjct: 6 YRCFVGGLAWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIE 65
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 66 AMNGQDLDGRNITVN 80
>gi|374315284|ref|YP_005061712.1| RRM domain-containing RNA-binding protein [Sphaerochaeta pleomorpha
str. Grapes]
gi|359350928|gb|AEV28702.1| RRM domain-containing RNA-binding protein [Sphaerochaeta pleomorpha
str. Grapes]
Length = 92
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++T++E L D F+Q+G V A II+D R KG+G+V + A+ A+ ++GK
Sbjct: 9 NMSYNTSEEELRDLFAQYGTVLSANIIIDRETRRPKGFGFVEMEEDSAAEAAISQLDGKD 68
Query: 124 LDGRVIFVDN--VRPSRRYNTD 143
LDGR + V+ +P YN +
Sbjct: 69 LDGRNLSVNEAIAKPRPSYNNN 90
>gi|224077247|ref|XP_002192236.1| PREDICTED: RNA-binding protein 39 [Taeniopygia guttata]
Length = 522
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 316 LAGRPMKVGHV----TERTDASSA 335
>gi|156841314|ref|XP_001644031.1| hypothetical protein Kpol_1026p21 [Vanderwaltozyma polyspora DSM
70294]
gi|156114664|gb|EDO16173.1| hypothetical protein Kpol_1026p21 [Vanderwaltozyma polyspora DSM
70294]
Length = 437
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S+S E L + F G V A +I + G +RS+GYGYV S++ A++A+ +M+GK +
Sbjct: 185 LSWSVDDEWLKNEFEHIGDVIGARVIYERGTDRSRGYGYVDFSSKSAAERAVKEMHGKQI 244
Query: 125 DGRVIFVD 132
DGR I D
Sbjct: 245 DGREINCD 252
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF+ ++ + + FS+ G++ + + KG+GYV +AQ AL + G+
Sbjct: 285 NLSFNADRDQIYELFSKHGEIISVRLPTHPETEQPKGFGYVQYGNVNDAQSALDALQGEY 344
Query: 124 LDGRVIFVDNVRP 136
+D R + +D P
Sbjct: 345 IDNRPVRLDFSTP 357
>gi|426241412|ref|XP_004014585.1| PREDICTED: RNA-binding protein 39 isoform 6 [Ovis aries]
gi|426241416|ref|XP_004014587.1| PREDICTED: RNA-binding protein 39 isoform 8 [Ovis aries]
Length = 373
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 99 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 158
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 159 LTGRPMKVGHVTE----RTDASSA 178
>gi|256421371|ref|YP_003122024.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
gi|256036279|gb|ACU59823.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
Length = 108
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L FS+FG+VT A II D RS+G+G+V +EE KA+ +NG ++G+ + V+
Sbjct: 17 LHQIFSEFGEVTSAKIIKDHETGRSRGFGFVEMPNQEEGSKAMDSLNGTEIEGKQLMVNE 76
Query: 134 VRPSRRYNT 142
RP + N
Sbjct: 77 ARPKQPNNN 85
>gi|126291195|ref|XP_001371651.1| PREDICTED: RNA-binding protein 39 isoform 1 [Monodelphis domestica]
Length = 524
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 316 LAGRPMKVGHV----TERTDASSA 335
>gi|336176064|ref|NP_001229528.1| RNA-binding protein 39 isoform c [Homo sapiens]
gi|296199707|ref|XP_002747281.1| PREDICTED: RNA-binding protein 39 isoform 4 [Callithrix jacchus]
gi|332858228|ref|XP_003316932.1| PREDICTED: uncharacterized protein LOC458443 isoform 2 [Pan
troglodytes]
gi|335304745|ref|XP_003360013.1| PREDICTED: RNA-binding protein 39 [Sus scrofa]
gi|338719242|ref|XP_003363966.1| PREDICTED: RNA-binding protein 39 [Equus caballus]
gi|345789990|ref|XP_003433300.1| PREDICTED: RNA-binding protein 39 [Canis lupus familiaris]
gi|426391511|ref|XP_004062116.1| PREDICTED: RNA-binding protein 39 isoform 3 [Gorilla gorilla
gorilla]
gi|124297482|gb|AAI31544.1| RBM39 protein [Homo sapiens]
gi|194389138|dbj|BAG61586.1| unnamed protein product [Homo sapiens]
Length = 508
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 234 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 293
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 294 LAGRPMKVGHV----TERTDASSA 313
>gi|426241414|ref|XP_004014586.1| PREDICTED: RNA-binding protein 39 isoform 7 [Ovis aries]
Length = 367
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 99 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 158
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 159 LTGRPMKVGHV----TERTDASSA 178
>gi|302679630|ref|XP_003029497.1| hypothetical protein SCHCODRAFT_85789 [Schizophyllum commune H4-8]
gi|300103187|gb|EFI94594.1| hypothetical protein SCHCODRAFT_85789 [Schizophyllum commune H4-8]
Length = 174
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 47/69 (68%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++TT + L AFS FGQV ++ ++ D RS+G+G+VT S+ EA+ A+ +N +
Sbjct: 9 NLSWNTTDDTLRQAFSNFGQVLDSIVMRDRETGRSRGFGFVTFSSSGEAESAISSLNEQE 68
Query: 124 LDGRVIFVD 132
LDGR I V+
Sbjct: 69 LDGRRIKVN 77
>gi|356526775|ref|XP_003531992.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Glycine max]
Length = 146
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T + +L DAF Q G++ E +I D +S+GYG+V +E A +MNG++
Sbjct: 64 GLSYDTNEPVLRDAFGQHGEIIEVKVICDHVTGKSRGYGFVRFLSETIAAATHKEMNGQI 123
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I V R
Sbjct: 124 LDGRCIRVSYAHKGER 139
>gi|297263082|ref|XP_001089948.2| PREDICTED: putative RNA-binding protein 3 [Macaca mulatta]
Length = 135
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+G++T + E A A+ MNG
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGDS 71
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I V + S R
Sbjct: 72 LDGRQIRVAHAGKSAR 87
>gi|108710322|gb|ABF98117.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
Length = 153
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFS +G++ ++ II D RS+G+G+VT S+E+ + A+
Sbjct: 8 YRCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 68 GMNGKELDGRNITVN 82
>gi|50881454|gb|AAT85299.1| glycine-rich RNA-binding protein, putative [Oryza sativa Japonica
Group]
gi|108710320|gb|ABF98115.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
gi|154550663|gb|ABS83497.1| receptor-like serine threonine kinase [Oryza sativa Japonica Group]
gi|169244423|gb|ACA50485.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
gi|215697732|dbj|BAG91726.1| unnamed protein product [Oryza sativa Japonica Group]
gi|306415943|gb|ADM86846.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
Length = 162
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFS +G++ ++ II D RS+G+G+VT S+E+ + A+
Sbjct: 8 YRCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNGK LDGR I V+
Sbjct: 68 GMNGKELDGRNITVN 82
>gi|298246745|ref|ZP_06970550.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
gi|297549404|gb|EFH83270.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
Length = 109
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+ + +T++ L F Q GQVT AT+I D RSKG+G+V S+++EA+ A+ +NG
Sbjct: 7 GLPYQSTEQDLIQLFEQIGQVTFATVITDRETGRSKGFGFVEMSSDDEARVAIEQLNGST 66
Query: 124 LDGRVIFVDNVRPSR 138
L R I V+ R R
Sbjct: 67 LGNRTITVNEARERR 81
>gi|469071|dbj|BAA03742.1| RNA-binding glycine-rich protein-1b [Nicotiana sylvestris]
gi|295393565|gb|ADG03638.1| RNA-binding glycine-rich protein [Nicotiana tabacum]
Length = 148
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++++TT LADAF +G+V ++ II D RS+G+G+VT E+ + A+ MNG+
Sbjct: 12 GLAWATTDRTLADAFGTYGEVLDSKIINDRETGRSRGFGFVTFKDEKCMRDAIEGMNGQE 71
Query: 124 LDGRVIFVDNVRP 136
LDGR I V+ +
Sbjct: 72 LDGRSITVNEAQA 84
>gi|356519124|ref|XP_003528224.1| PREDICTED: uncharacterized protein LOC100801928 [Glycine max]
Length = 656
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
VS+S + L + SQ+GQV +A IIMD R +G+G++T S +EA +AL ++G+ L
Sbjct: 49 VSYSIDAQSLGEICSQYGQVVDARIIMDRETGRHRGFGFITYSNVDEASRALQALDGQDL 108
Query: 125 DGRVIFV 131
DGR + V
Sbjct: 109 DGRRVEV 115
>gi|194386804|dbj|BAG61212.1| unnamed protein product [Homo sapiens]
Length = 502
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 234 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 293
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 294 LAGRPMKVGHV----TERTDASSA 313
>gi|9964085|gb|AAG09816.1|AF278702_1 cold-inducible RNA binding protein XCIRP-1 [Xenopus laevis]
Length = 166
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F T + L AF+++G+++E ++ D RS+G+G+VT ++A+ A++ MNGK
Sbjct: 11 GLNFETNEGCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKS 70
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 71 VDGRQIRVDQAGKS 84
>gi|254572962|ref|XP_002493590.1| Nucleolar protein that binds nuclear localization sequences
[Komagataella pastoris GS115]
gi|238033389|emb|CAY71411.1| Nucleolar protein that binds nuclear localization sequences
[Komagataella pastoris GS115]
gi|328354581|emb|CCA40978.1| Nuclear localization sequence-binding protein [Komagataella
pastoris CBS 7435]
Length = 362
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S+S E L F G V A ++M+ RS+GYGYV + A+KAL +M GK +
Sbjct: 133 LSWSIDDEWLKKEFEHIGGVVGARVMMERATGRSRGYGYVDFDNKASAEKALEEMQGKEI 192
Query: 125 DGRVIFVD--NVRPS 137
DGR I VD N +P+
Sbjct: 193 DGRPINVDMSNSKPA 207
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF ++ L + FS+ G VT I + KG+GYV S+ +EA AL +NG+
Sbjct: 235 NLSFQADRDTLFELFSKHGNVTSVRIPTHPETEQPKGFGYVQFSSVDEATGALEALNGEY 294
Query: 124 LDGRVIFVDNVRP 136
+D R I +D P
Sbjct: 295 VDNRPIRLDYSTP 307
>gi|432101442|gb|ELK29624.1| RNA-binding protein 39 [Myotis davidii]
Length = 491
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 234 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 293
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 294 LAGRPMKVGHV----TERTDASSA 313
>gi|195642478|gb|ACG40707.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 153
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD- 132
L +AFS FG+VTEA +I D RS+G+G+V S + A++A+ M+GK +DGR + V+
Sbjct: 53 LREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNM 112
Query: 133 -NVRPS 137
N RP+
Sbjct: 113 ANERPA 118
>gi|148695099|gb|EDL27046.1| mCG129611 [Mus musculus]
Length = 172
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L + FS FG ++E ++ D RS G+G++T + E A A+ MNG+
Sbjct: 31 GLNFNTHEQALENYFSSFGPISEVVVVKDRETQRSWGFGFITFTNPEHASDAMRAMNGES 90
Query: 124 LDGRVIFVDNVRPSRR 139
LDGR I VD+ S R
Sbjct: 91 LDGRQIRVDHAGKSAR 106
>gi|336176066|ref|NP_001229529.1| RNA-binding protein 39 isoform d [Homo sapiens]
gi|73991836|ref|XP_865202.1| PREDICTED: RNA-binding protein 39 isoform 16 [Canis lupus
familiaris]
gi|296199705|ref|XP_002747280.1| PREDICTED: RNA-binding protein 39 isoform 3 [Callithrix jacchus]
gi|332858230|ref|XP_003316933.1| PREDICTED: uncharacterized protein LOC458443 isoform 3 [Pan
troglodytes]
gi|335304749|ref|XP_003360015.1| PREDICTED: RNA-binding protein 39 [Sus scrofa]
gi|338719245|ref|XP_003363967.1| PREDICTED: RNA-binding protein 39 [Equus caballus]
gi|426391513|ref|XP_004062117.1| PREDICTED: RNA-binding protein 39 isoform 4 [Gorilla gorilla
gorilla]
Length = 502
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 234 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 293
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 294 LAGRPMKVGHV----TERTDASSA 313
>gi|399931807|gb|AFP57453.1| RNA-binding glycine-rich protein [Nicotiana rustica]
Length = 144
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 61 RCIS-------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQ 113
RC+S +S+ T + L DAF+ FG V +A +I+D RS+G+G+V S +E A
Sbjct: 34 RCMSTKLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGRSRGFGFVNFSDDESAN 93
Query: 114 KALVDMNGKLLDGRVIFV 131
+A+ M+G+ L GR I V
Sbjct: 94 EAIKAMDGQELQGRNIRV 111
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L + FSQFG+ +++D +S+G+G+V EEAQKA+ +MNGK L GRV++V
Sbjct: 205 ECLQELFSQFGKTLSVKVMVD-ENGQSRGFGFVNFEKHEEAQKAVSNMNGKELGGRVLYV 263
Query: 132 DNVRPSRRYNTDASLARQPAQSPEE 156
R +R + L R+ Q +E
Sbjct: 264 G--RAQKRSERQSELKRRFEQMKQE 286
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D FS FG + ++ D +N S+G+G+V T E A +A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSTFGNILSCKVVCD--ENGSRGFGFVHFETHEAANQAINTMNGMLLNDR 166
Query: 128 VIFVDNVR 135
+FV + +
Sbjct: 167 KVFVGHFK 174
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L FS +G +T A ++ + G SKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 EKLRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>gi|242055771|ref|XP_002457031.1| hypothetical protein SORBIDRAFT_03g047450 [Sorghum bicolor]
gi|241929006|gb|EES02151.1| hypothetical protein SORBIDRAFT_03g047450 [Sorghum bicolor]
Length = 146
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T + L DAFSQ+G V +I +SKG+G+V S+E +A AL +NG++
Sbjct: 65 GLSYDTNETALKDAFSQYGDVIAVRVICHPTTGKSKGFGFVKFSSENQAAAALQKLNGQV 124
Query: 124 LDGRVIFV 131
LDGR I V
Sbjct: 125 LDGRNIRV 132
>gi|31873732|emb|CAD97833.1| hypothetical protein [Homo sapiens]
Length = 373
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 99 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 158
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 159 LAGRPMKVGHVTE----RTDASSA 178
>gi|116783558|gb|ABK22994.1| unknown [Picea sitchensis]
Length = 157
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 10/99 (10%)
Query: 41 HCIVRPSSDLIMQLVNVSFWRCIS-------VSFSTTKEMLADAFSQFGQVTEATIIMDI 93
H RPS + M + +F RC+S +S+ + L ++F+ FG V EA II D
Sbjct: 18 HVSSRPS--VYMPAIYSAF-RCMSSKVFVGGLSYGVDDQTLRESFATFGDVMEAKIINDR 74
Query: 94 GKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132
RS+G+G+VT ++ +EA A+ M+GK L GR I V+
Sbjct: 75 ETGRSRGFGFVTFASPDEANAAVEAMDGKDLQGRSIRVN 113
>gi|410055058|ref|XP_003316934.2| PREDICTED: uncharacterized protein LOC458443 isoform 4 [Pan
troglodytes]
gi|410055062|ref|XP_003953767.1| PREDICTED: uncharacterized protein LOC458443 [Pan troglodytes]
gi|426391515|ref|XP_004062118.1| PREDICTED: RNA-binding protein 39 isoform 5 [Gorilla gorilla
gorilla]
gi|426391519|ref|XP_004062120.1| PREDICTED: RNA-binding protein 39 isoform 7 [Gorilla gorilla
gorilla]
gi|119596566|gb|EAW76160.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_b [Homo
sapiens]
gi|119596571|gb|EAW76165.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_b [Homo
sapiens]
Length = 373
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 99 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 158
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 159 LAGRPMKVGHVTE----RTDASSA 178
>gi|34365067|emb|CAE45890.1| hypothetical protein [Homo sapiens]
Length = 373
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 99 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 158
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 159 LAGRPMKVGHVTE----RTDASSA 178
>gi|431894348|gb|ELK04148.1| RNA-binding protein 39 [Pteropus alecto]
Length = 601
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 333 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 392
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 393 LAGRPMKVGHV----TERTDASSA 412
>gi|7024451|dbj|BAA92156.1| glycine-rich RNA-binding protein [Citrus unshiu]
Length = 167
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 52 MQLVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTE 109
M +V F RC ++++TT L +AFS +G + E+ II D RS+G+G+VT E
Sbjct: 1 MASADVEF-RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDE 59
Query: 110 EEAQKALVDMNGKLLDGRVIFVD 132
+ + A+ MNG+ LDGR I V+
Sbjct: 60 KSMRDAIEGMNGQNLDGRNITVN 82
>gi|388508864|gb|AFK42498.1| unknown [Medicago truncatula]
Length = 300
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 46 PSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVT 105
PS DL + + N+ F E LA F Q G V A +I + +RS+G+G+VT
Sbjct: 118 PSEDLKIFVGNLPF--------DVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVT 169
Query: 106 SSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136
ST EE ++A+ +G LDGR++ V+N P
Sbjct: 170 MSTSEEVERAVNKFSGFELDGRLLTVNNAAP 200
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD- 132
L FS+ G+V A ++ D R +G+G+VT S E E A+ ++G+ +GR I V+
Sbjct: 232 LEQLFSEHGKVESAQVVYDRETGRLRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNV 291
Query: 133 -NVRPSRRY 140
RP R +
Sbjct: 292 AEERPRRSF 300
>gi|302818104|ref|XP_002990726.1| hypothetical protein SELMODRAFT_185536 [Selaginella moellendorffii]
gi|300141464|gb|EFJ08175.1| hypothetical protein SELMODRAFT_185536 [Selaginella moellendorffii]
Length = 738
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 44/68 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++++T++E L F Q+G+V + +I D NRSKGYGYV EEA +A+ +++ +
Sbjct: 231 NLAYTTSEEELVSLFGQYGEVVQVHVICDKETNRSKGYGYVGFMLPEEATRAMTELDNSI 290
Query: 124 LDGRVIFV 131
GR++ V
Sbjct: 291 FQGRLLHV 298
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD---- 125
T + L + F GQVT+A + M + +S+ +G+V ++EEA+ A+ N LD
Sbjct: 17 TDDKLKEHFGAKGQVTDAKV-MRTREGKSRRFGFVGFYSQEEAESAVAYFNRSFLDTSRL 75
Query: 126 ----GRVIFVDNVRPSRRYNTDASLARQPAQSPEEN 157
R + VRP R++ +S A + +PEE
Sbjct: 76 VCEVARSVGDAAVRPWSRHSKGSS-AYEKTHAPEEK 110
Score = 35.4 bits (80), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+V+F T++ L FS FGQV + + N +G+ +V T++EAQ A +
Sbjct: 640 NVAFEATRKDLKLLFSPFGQVKKVKLPKKFDGNH-RGFAFVEFVTKQEAQNAFEALGSSH 698
Query: 124 LDGRVIFVDNVR 135
L GR + ++ R
Sbjct: 699 LYGRHLVLEWAR 710
>gi|336272443|ref|XP_003350978.1| hypothetical protein SMAC_04282 [Sordaria macrospora k-hell]
gi|380090745|emb|CCC04915.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 192
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S++T ML F +FG V EA ++ D RS+G+G+V + + +A+ A+ +M+G+
Sbjct: 8 GLSWNTDDNMLRAKFEEFGAVEEAVVVKDRDTGRSRGFGFVRYANDADAENAIANMDGQE 67
Query: 124 LDGRVIFVD 132
DGR + VD
Sbjct: 68 FDGRRVRVD 76
>gi|190402270|gb|ACE77680.1| RNA binding motif protein 39 isoform a (predicted) [Sorex araneus]
Length = 435
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 316 LAGRPMKVGHV----TERTDASSA 335
>gi|406956570|gb|EKD84644.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 81
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ ++ L + F+Q G V A ++ D RS+G+G+V ST+EEAQ A+ ++NG
Sbjct: 5 SLPWAVDDAKLGEIFAQAGNVVSAQVVKDRETGRSRGFGFVEMSTDEEAQNAVKNLNGAD 64
Query: 124 LDGRVIFVDNVRP 136
++GR I V+ RP
Sbjct: 65 VEGRKIVVNIARP 77
>gi|302762761|ref|XP_002964802.1| hypothetical protein SELMODRAFT_69504 [Selaginella moellendorffii]
gi|300167035|gb|EFJ33640.1| hypothetical protein SELMODRAFT_69504 [Selaginella moellendorffii]
Length = 94
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ L AF+ +G+VTEA +IMD RS+G+G+VT + EA+ A+ M+G
Sbjct: 1 GLAWGVDDGTLRTAFANYGEVTEARVIMDRETGRSRGFGFVTFENDNEAKAAVQGMDGHE 60
Query: 124 LDGRVIFVDNV--RPS 137
L GR I VD RPS
Sbjct: 61 LGGRSIRVDYASDRPS 76
>gi|168037600|ref|XP_001771291.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677380|gb|EDQ63851.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 87
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++TT + L AF FG V ++ +I D RS+G+G++T + E +A+
Sbjct: 2 FRCFVGGLAWATTDDRLEQAFRPFGDVIQSKVISDRETGRSRGFGFITFADENAMNEAIK 61
Query: 118 DMNGKLLDGRVIFVD 132
+MNGK LDGR I V+
Sbjct: 62 EMNGKELDGRNITVN 76
>gi|1346181|sp|P49311.1|GRP2_SINAL RecName: Full=Glycine-rich RNA-binding protein GRP2A
gi|496237|gb|AAA59213.1| homology with RNA-binding proteins in meristematic tissue [Sinapis
alba]
Length = 169
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T + L AFSQFG++ ++ II D RS+G+G+VT E+ + A+
Sbjct: 8 YRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIE 67
Query: 118 DMNGKLLDGRVIFVDNVR 135
MNG+ LDGR I V+ +
Sbjct: 68 GMNGQDLDGRSITVNEAQ 85
>gi|62857615|ref|NP_001016788.1| RNA binding motif protein 39 [Xenopus (Silurana) tropicalis]
gi|62201342|gb|AAH93451.1| RNA binding motif protein 39 [Xenopus (Silurana) tropicalis]
gi|89273890|emb|CAJ83908.1| RNA-binding region (RNP1, RRM) containing 2 [Xenopus (Silurana)
tropicalis]
Length = 542
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 257 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 316
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 317 LAGRPMKVGHV----TERTDASNA 336
>gi|407688765|ref|YP_006803938.1| hypothetical protein AMBAS45_14970 [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407292145|gb|AFT96457.1| hypothetical protein AMBAS45_14970 [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 117
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
TKE L D F +FG + ++MD SKG+G+V ST+EE KA+ +N K++DG+ I
Sbjct: 13 TKENLEDLFFEFGTIASCDLVMDEASGLSKGFGFVEMSTQEETDKAIEKLNAKVIDGKKI 72
Query: 130 FV 131
V
Sbjct: 73 RV 74
>gi|337278094|ref|YP_004617565.1| RNA-binding protein [Ramlibacter tataouinensis TTB310]
gi|334729170|gb|AEG91546.1| Candidate RNA-binding protein [Ramlibacter tataouinensis TTB310]
Length = 95
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
+ AFSQFG V A ++MD RSKG+G+V + EAQ A+ M+G+ GR + V+
Sbjct: 19 MQQAFSQFGTVGSAKVVMDRDTGRSKGFGFVEMGSAAEAQSAIQGMHGQQHGGRDLVVNE 78
Query: 134 VRPSRRYNTDASLARQ 149
RP + AR+
Sbjct: 79 ARPMEPRTGGSGAARR 94
>gi|88911212|gb|ABD58896.1| chloroplast single strand DNA binding protein [Mesostigma viride]
Length = 299
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++++S EML AFSQFG+V A +++D RS+G+ +VT ++ + A+KA ++G
Sbjct: 96 NLAWSCDDEMLNQAFSQFGEVKAAEVVLDRESGRSRGFAFVTMASPDAAEKARRGLDGTE 155
Query: 124 LDGRVIFVDNVRP 136
L GR I V+ +P
Sbjct: 156 LAGRAIRVNFPQP 168
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S ML D F +FG V A ++MD RS+G+ +V ST EEA +A+ +++G+
Sbjct: 210 NLPWSMDDGMLEDLFMEFGTVNYARVVMDRDSGRSRGFAFVALSTPEEANEAMANLDGEE 269
Query: 124 LDGRVIFVD 132
+ GR I V+
Sbjct: 270 IGGRTIRVN 278
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L + FS FG ++MD RS+G+G+V EEAQKA+ +MNGK ++GR+I+V
Sbjct: 207 LREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG- 264
Query: 134 VRPSRRYNTDASLARQ 149
R +R + L R+
Sbjct: 265 -RAQKRIERQSELKRK 279
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D FS FG + ++ D ++ S+GYG+V T E A +A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--EHGSRGYGFVHFETHEAANRAIQTMNGMLLNDR 166
Query: 128 VIFVDNVRPSRR 139
+FV + + SRR
Sbjct: 167 KVFVGHFK-SRR 177
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
L F +G +T A ++ + G SKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 310 LRKEFLPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>gi|392570008|gb|EIW63181.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 126
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 47/69 (68%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++TT + L AFS +GQ+ ++ ++ D RS+G+G+VT S+ EAQ A+ +N +
Sbjct: 9 NLSWNTTDDSLRSAFSNYGQILDSIVMRDRDTGRSRGFGFVTFSSSGEAQTAISSLNEQE 68
Query: 124 LDGRVIFVD 132
LDGR I V+
Sbjct: 69 LDGRRIKVN 77
>gi|160899081|ref|YP_001564663.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|333914782|ref|YP_004488514.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
gi|160364665|gb|ABX36278.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|333744982|gb|AEF90159.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
Length = 115
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 67 FSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG 126
+S T L F++FG V A ++MD RSKG+G+V ++ E AQ A+ ++G +DG
Sbjct: 12 YSVTDSSLESNFAEFGNVASAKVMMDRETGRSKGFGFVEMASAEVAQAAITGLHGMSVDG 71
Query: 127 RVIFVDNVRP 136
R I V+ RP
Sbjct: 72 RSIVVNLARP 81
>gi|399931811|gb|AFP57455.1| RNA-binding glycine-rich protein [Nicotiana undulata]
Length = 144
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 61 RCIS-------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQ 113
RC+S +S+ T + L DAF+ FG V +A +I+D RS+G+G+V S +E A
Sbjct: 34 RCMSTKLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGRSRGFGFVNFSDDESAN 93
Query: 114 KALVDMNGKLLDGRVIFV 131
+A+ M+G+ L GR I V
Sbjct: 94 EAIKAMDGQELQGRNIRV 111
>gi|399931797|gb|AFP57448.1| RNA-binding glycine-rich protein [Nicotiana clevelandii]
Length = 144
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 61 RCIS-------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQ 113
RC+S +S+ T + L DAF+ FG V +A +I+D RS+G+G+V S +E A
Sbjct: 34 RCMSTKLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGRSRGFGFVNFSDDESAN 93
Query: 114 KALVDMNGKLLDGRVIFV 131
+A+ M+G+ L GR I V
Sbjct: 94 EAIKAMDGQELQGRNIRV 111
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L D FSQFG+ ++ D +SKG+G+V+ E+A KA+ +MNGK + G+VIFV
Sbjct: 205 ESLKDLFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVIFV 263
Query: 132 DNVRPSRRYNTDASLARQ 149
R ++ A L R+
Sbjct: 264 G--RAQKKVERQAELKRK 279
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L FS FG +T A ++++ G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D FS FG + ++ D +N SKGY +V T+E A KA+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Query: 128 VIFV 131
+FV
Sbjct: 167 KVFV 170
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
T+ ML + FS G V + D+ RS GY YV +A++AL MN ++ G+ I
Sbjct: 23 TEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPI 82
Query: 130 FV 131
+
Sbjct: 83 RI 84
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L + FS FG ++MD RS+G+G+V EEAQKA+ +MNGK ++GR+I+V
Sbjct: 207 LREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG- 264
Query: 134 VRPSRRYNTDASLARQ 149
R +R + L R+
Sbjct: 265 -RAQKRIERQSELKRK 279
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D FS FG + ++ D ++ S+GYG+V T E A +A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--EHGSRGYGFVHFETHEAANRAIQTMNGMLLNDR 166
Query: 128 VIFVDNVRPSRR 139
+FV + + SRR
Sbjct: 167 KVFVGHFK-SRR 177
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
L F +G +T A ++ + G SKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 310 LRKEFLPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>gi|449507320|ref|XP_004162998.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
Length = 139
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFS +G++ EA I+ D RS+G+G+VT EE + A+
Sbjct: 8 FRCFVGGLAWATDSNSLEKAFSVYGEIVEAKIVSDRETGRSRGFGFVTFLEEEAMRSAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNG +LDGR I V+
Sbjct: 68 AMNGHILDGRNITVN 82
>gi|449462238|ref|XP_004148848.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
gi|449507318|ref|XP_004162997.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
Length = 141
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFS +G++ EA I+ D RS+G+G+VT EE + A+
Sbjct: 8 FRCFVGGLAWATDSNSLEKAFSVYGEIVEAKIVSDRETGRSRGFGFVTFLEEEAMRSAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNG +LDGR I V+
Sbjct: 68 AMNGHILDGRNITVN 82
>gi|449462236|ref|XP_004148847.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
gi|449507315|ref|XP_004162996.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
Length = 144
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFS +G++ EA I+ D RS+G+G+VT EE + A+
Sbjct: 8 FRCFVGGLAWATDSNSLEKAFSVYGEIVEAKIVSDRETGRSRGFGFVTFLEEEAMRSAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNG +LDGR I V+
Sbjct: 68 AMNGHILDGRNITVN 82
>gi|449462234|ref|XP_004148846.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
Length = 156
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFS +G++ EA I+ D RS+G+G+VT EE + A+
Sbjct: 8 FRCFVGGLAWATDSNSLEKAFSVYGEIVEAKIVSDRETGRSRGFGFVTFLEEEAMRSAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNG +LDGR I V+
Sbjct: 68 AMNGHILDGRNITVN 82
>gi|449462232|ref|XP_004148845.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
gi|449507311|ref|XP_004162995.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
Length = 171
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFS +G++ EA I+ D RS+G+G+VT EE + A+
Sbjct: 8 FRCFVGGLAWATDSNSLEKAFSVYGEIVEAKIVSDRETGRSRGFGFVTFLEEEAMRSAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNG +LDGR I V+
Sbjct: 68 AMNGHILDGRNITVN 82
>gi|413939453|gb|AFW74004.1| hypothetical protein ZEAMMB73_282165 [Zea mays]
Length = 287
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++ T EML +AF + G V A ++ D RS+GYG+V ST EE +AL +NG
Sbjct: 213 NLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSSLNGME 272
Query: 124 LDGRVIFVD 132
++GR + V+
Sbjct: 273 MEGREMRVN 281
>gi|399931799|gb|AFP57449.1| RNA-binding glycine-rich protein [Nicotiana glauca]
Length = 144
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 61 RCIS-------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQ 113
RC+S +S+ T + L DAF+ FG V +A +I+D RS+G+G+V S +E A
Sbjct: 34 RCMSTKLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGRSRGFGFVNFSDDESAN 93
Query: 114 KALVDMNGKLLDGRVIFV 131
+A+ M+G+ L GR I V
Sbjct: 94 EAIKAMDGQELQGRNIRV 111
>gi|298244419|ref|ZP_06968225.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
gi|297551900|gb|EFH85765.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
Length = 106
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+ + +T++ L F Q GQVT AT+I D RSKG+G+V S+++EA+ A+ +NG
Sbjct: 7 GLPYQSTEQDLIQLFEQIGQVTFATVITDRETGRSKGFGFVEMSSDDEARAAIEQLNGST 66
Query: 124 LDGRVIFVDNVRPSR 138
L R I V+ R R
Sbjct: 67 LGDRTITVNEARERR 81
>gi|119596573|gb|EAW76167.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_f [Homo
sapiens]
Length = 423
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 256 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 316 LAGRPMKVGHV----TERTDASSA 335
>gi|359688008|ref|ZP_09258009.1| RNP-1 like RNA-binding protein [Leptospira licerasiae serovar
Varillal str. MMD0835]
Length = 100
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+STT L F G + EA I++D RS+G+G+VT + A A+ ++NGK
Sbjct: 9 GLSWSTTDLTLRQVFETHGAIQEANIVVDRETGRSRGFGFVTFVDQSSANAAVSELNGKD 68
Query: 124 LDGRVIFV----DNVRPSRRYNTDASLAR 148
LDGR I V D R R NT+ R
Sbjct: 69 LDGRNIVVSVAEDKSRSDRNRNTNRKFQR 97
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 71 KEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIF 130
++ L D FSQFG++ ++ D+ S+G+G+V EEAQKA+V+MNG+ + GR+++
Sbjct: 204 EQRLQDLFSQFGKMLSVKVMRDV-SGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLY 262
Query: 131 VDNVRPSRRYNTDASLARQ 149
V R +R L R+
Sbjct: 263 VG--RAQKRVERQNELKRR 279
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D FS FG + ++ D ++ S+G+G+V T E AQ A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSTFGNILSCKVVCD--EHGSRGFGFVHFETHEAAQNAISTMNGMLLNDR 166
Query: 128 VIFVDNVRPSRR 139
+FV + + SRR
Sbjct: 167 KVFVGHFK-SRR 177
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S E L FS +G +T A ++ + G SKG+G+V S+ EEA KA+ +MNG+++ +
Sbjct: 304 SIDDEKLRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 128 VIFV 131
++V
Sbjct: 362 PLYV 365
>gi|399931805|gb|AFP57452.1| RNA-binding glycine-rich protein [Nicotiana repanda]
Length = 144
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 61 RCIS-------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQ 113
RC+S +S+ T + L DAF+ FG V +A +I+D RS+G+G+V S +E A
Sbjct: 34 RCMSTKLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGRSRGFGFVNFSDDESAN 93
Query: 114 KALVDMNGKLLDGRVIFV 131
+A+ M+G+ L GR I V
Sbjct: 94 EAIKAMDGQELQGRNIRV 111
>gi|224097630|ref|XP_002311019.1| predicted protein [Populus trichocarpa]
gi|222850839|gb|EEE88386.1| predicted protein [Populus trichocarpa]
Length = 333
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T+++ L AF FG++ E IIMD RSKGY +V +TEE A AL +MNGK+
Sbjct: 272 GLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKV 331
>gi|349604477|gb|AEQ00017.1| RNA-binding protein 39-like protein, partial [Equus caballus]
Length = 374
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 239 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 298
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 299 LAGRPMKVGHV----TERTDASSA 318
>gi|410055060|ref|XP_003953766.1| PREDICTED: uncharacterized protein LOC458443 [Pan troglodytes]
gi|426391517|ref|XP_004062119.1| PREDICTED: RNA-binding protein 39 isoform 6 [Gorilla gorilla
gorilla]
gi|20988961|gb|AAH30493.1| Rbm39 protein [Mus musculus]
gi|34364789|emb|CAE45833.1| hypothetical protein [Homo sapiens]
gi|111598490|gb|AAH82607.1| Rbm39 protein [Mus musculus]
gi|119596570|gb|EAW76164.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_d [Homo
sapiens]
gi|149030835|gb|EDL85862.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_g [Rattus
norvegicus]
Length = 367
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 99 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 158
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 159 LAGRPMKVGHV----TERTDASSA 178
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L AFS FG +T A ++M+ G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L D F +FG ++ D +SKG+G+V+ E+AQKA+ +MNGK L+G+ I+V
Sbjct: 205 ERLKDLFGKFGPTLSVKVMTD-QSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYV 263
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D S FG V ++ D +N SKGYG+V T E A++A+ MNG L+ R
Sbjct: 109 SINNKALYDTVSAFGNVLSCKVVCD--ENGSKGYGFVHFETREAAERAIEKMNGIPLNDR 166
Query: 128 VIFV 131
+FV
Sbjct: 167 KVFV 170
>gi|169772913|ref|XP_001820925.1| glycine-rich RNA-binding protein 2 [Aspergillus oryzae RIB40]
gi|238490830|ref|XP_002376652.1| heterogeneous nuclear ribonucleoprotein G, putative [Aspergillus
flavus NRRL3357]
gi|83768786|dbj|BAE58923.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220697065|gb|EED53406.1| heterogeneous nuclear ribonucleoprotein G, putative [Aspergillus
flavus NRRL3357]
Length = 125
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++T E L FS+FG V +A ++ D RS+G+G+VT S + EA A+ +N +
Sbjct: 10 NLSWNTNDESLRQTFSEFGNVLDAIVMKDRETGRSRGFGFVTFSAQTEADAAIGGLNEQE 69
Query: 124 LDGRVIFVD--NVRPS 137
LDGR I V+ N RP+
Sbjct: 70 LDGRRIRVNLANARPA 85
>gi|119492333|ref|XP_001263582.1| glycine-rich RNA-binding protein, putative [Neosartorya fischeri
NRRL 181]
gi|119411742|gb|EAW21685.1| glycine-rich RNA-binding protein, putative [Neosartorya fischeri
NRRL 181]
Length = 118
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT + L F +G V EA ++ D NRS+G+G+V S++ EA A+ MN +
Sbjct: 8 GLAWHTTDDALRQGFEPYGVVEEAIVVKDRDTNRSRGFGFVRFSSDTEADAAMDAMNNQE 67
Query: 124 LDGRVIFVDNV--RPSR 138
DGR I VD RP+R
Sbjct: 68 FDGRTIRVDKASERPAR 84
>gi|392402152|ref|YP_006438764.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
gi|390610106|gb|AFM11258.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
Length = 117
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++++S T++ L AFS+FG V A +IMD R KG+ +V + E KA+ MNG+
Sbjct: 7 NLAYSVTEQDLKQAFSEFGTVQSAKMIMDRDTGRPKGFAFVEMENKSEGIKAISGMNGRS 66
Query: 124 LDGRVIFVDNVRP 136
++ R I V+ RP
Sbjct: 67 MNDREIVVNEARP 79
>gi|375145012|ref|YP_005007453.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361059058|gb|AEV98049.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 105
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ F+ E L D F+ +G++T A IIMD +S+G+G+V + EA+KA+ +++ +
Sbjct: 7 NLGFNVQDEDLKDFFAPYGEITSAKIIMDRETGKSRGFGFVEMPNDAEAKKAIAELDQAM 66
Query: 124 LDGRVIFVDNVRP 136
++GR I V RP
Sbjct: 67 VEGRAIKVVEARP 79
>gi|358254799|dbj|GAA56358.1| nucleolysin TIA-1 isoform p40 [Clonorchis sinensis]
Length = 508
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
++L AF+ FG VTE II D+ + KGYG+V + EEA++A+ MNG++L R I
Sbjct: 50 DVLLAAFNTFGNVTECKIIKDMHTQKPKGYGFVAYKSREEAERAIQVMNGQILGSRAI 107
>gi|336386026|gb|EGO27172.1| hypothetical protein SERLADRAFT_434943 [Serpula lacrymans var.
lacrymans S7.9]
Length = 284
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%)
Query: 62 CISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNG 121
+S T + L + FS+FG+V + TI+ D +RS+G+G++ ST EEA + + ++NG
Sbjct: 87 VFGLSIRTQERDLDEEFSRFGRVEKVTIVYDQRSDRSRGFGFIKMSTVEEATRCIQELNG 146
Query: 122 KLLDGRVIFVD 132
L+GR I VD
Sbjct: 147 VDLNGRRIRVD 157
>gi|334185950|ref|NP_001190079.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|332645571|gb|AEE79092.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
Length = 363
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ L + F++ G+V EA +I D RSKG+G+VT S+ +E QKA+ +NG
Sbjct: 284 NLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGAD 343
Query: 124 LDGRVIFVD--NVRPSR 138
LDGR I V RP R
Sbjct: 344 LDGRQIRVSEAEARPPR 360
>gi|321472566|gb|EFX83536.1| hypothetical protein DAPPUDRAFT_194972 [Daphnia pulex]
Length = 366
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 45/71 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ +++D RSKGYG++T E+A+KA+ +NG
Sbjct: 116 SLHFNITEDMLRSIFEPFGKIEHMQLMIDTETGRSKGYGFITFRNAEDAKKAMEQLNGFE 175
Query: 124 LDGRVIFVDNV 134
L GR + +++V
Sbjct: 176 LAGRPMKINHV 186
>gi|242035621|ref|XP_002465205.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
gi|241919059|gb|EER92203.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
Length = 262
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 12 IQQFNSYFTEDSLLSFSSKPYQVVNYFSLHCIVRPSSDLIMQLVNVSFWRCISVSFSTTK 71
++QFN Y + L +S P + S P D V ++S+
Sbjct: 141 VEQFNGYVLDGRSLRVNSGPPPPRDPSSQRG---PRGDANRVYVG-------NLSWGVDN 190
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI-- 129
LA+ FS+ G+V EA I+ D RS+G+G+VT + EE + A+ +++G LDGR I
Sbjct: 191 SALANLFSEQGEVLEARIVYDRESGRSRGFGFVTYGSAEEVENAISNLDGSDLDGRQIRV 250
Query: 130 FVDNVRPSRR 139
V +P RR
Sbjct: 251 TVAESKPPRR 260
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ FS LA F Q G V +I D RS+G+G+VT S+ +E + A+ NG +
Sbjct: 89 NLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVQEVEAAVEQFNGYV 148
Query: 124 LDGRVIFVDNVRPSRRYNTDASLARQP 150
LDGR + V++ P R D S R P
Sbjct: 149 LDGRSLRVNSGPPPPR---DPSSQRGP 172
>gi|443919574|gb|ELU39701.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 716
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++TT++ L AF +FG VT + D + KG+GYV +E A KA M GK
Sbjct: 215 NLSWNTTEDGLWTAFGEFGDVTHVRLPTDQESGKPKGFGYVEFGDQEGATKAYEAMKGKD 274
Query: 124 LDGRVIFVDNVRP 136
LDGR + +D +P
Sbjct: 275 LDGRTLRLDYSQP 287
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S++ + LA F G V A + MD +S+G+ YV S+ EAQKA+ +MNGK +
Sbjct: 117 LSWNVDNDWLAQEFQGCGTVVAARVQMDRNSGKSRGFAYVEFSSPAEAQKAVEEMNGKQI 176
Query: 125 DGRVIFVDNVRP 136
DGR + VD +P
Sbjct: 177 DGREVNVDISQP 188
>gi|78186885|ref|YP_374928.1| RNA recognition motif-containing protein [Chlorobium luteolum DSM
273]
gi|78166787|gb|ABB23885.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
luteolum DSM 273]
Length = 90
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ ++ +++ L DAFS+FG+V A II D RSKG+G+V ++ A++A+ M+ K
Sbjct: 7 NLPYTISEDDLRDAFSEFGEVASANIITDKFSGRSKGFGFVEMPDDDAAREAIESMHNKD 66
Query: 124 LDGRVIFVDNVRP 136
GR I V+ +P
Sbjct: 67 FKGRSIMVNEAKP 79
>gi|224107511|ref|XP_002314506.1| predicted protein [Populus trichocarpa]
gi|222863546|gb|EEF00677.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+S T E L AF ++G V A ++ D +S+GYG+V ST+ E Q ALV ++G
Sbjct: 204 NLSWSATSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKAEMQTALVSLDGVE 263
Query: 124 LDGRVIFV 131
L+GR + V
Sbjct: 264 LEGRALRV 271
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L + FS FG ++MD RS+G+G+V EEAQKA+ +MNGK ++GR+I+V
Sbjct: 207 LREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG- 264
Query: 134 VRPSRRYNTDASLARQ 149
R +R L R+
Sbjct: 265 -RAQKRIERQGELKRK 279
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D FS FG + ++ D ++ S+GYG+V T+E A +A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--EHGSRGYGFVHFETQEAANRAIQTMNGMLLNDR 166
Query: 128 VIFVDNVRPSRR 139
+FV + + SRR
Sbjct: 167 KVFVGHFK-SRR 177
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
L FS +G +T A ++ + G SKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 310 LRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>gi|392593257|gb|EIW82582.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 136
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ST + L +AF ++G VT++ ++ D RS+G+G+VT +T EEA A+ M+
Sbjct: 9 NLSWSTGDDGLRNAFGRYGAVTDSIVMRDRETGRSRGFGFVTFTTAEEANAAMGQMDQTE 68
Query: 124 LDGRVIFVD--NVRP 136
LDGR I V+ N +P
Sbjct: 69 LDGRTIRVNVANAKP 83
>gi|209735756|gb|ACI68747.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 81
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF TT+E LA+AF+++G + + +I D RS+G+G+V E+A+ AL MNGK
Sbjct: 11 GLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKDALEGMNGKS 70
Query: 124 LDGRVIFV 131
+D +IFV
Sbjct: 71 VD--LIFV 76
>gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|186511018|ref|NP_850692.2| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|334185948|ref|NP_001190078.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|30316379|sp|Q43349.2|ROC2_ARATH RecName: Full=29 kDa ribonucleoprotein, chloroplastic; AltName:
Full=RNA-binding protein cp29; Flags: Precursor
gi|6729497|emb|CAB67653.1| RNA-binding protein cp29 protein [Arabidopsis thaliana]
gi|14532570|gb|AAK64013.1| AT3g53460/F4P12_160 [Arabidopsis thaliana]
gi|18655393|gb|AAL76152.1| AT3g53460/F4P12_160 [Arabidopsis thaliana]
gi|21593426|gb|AAM65393.1| RNA-binding protein cp29 protein [Arabidopsis thaliana]
gi|332645568|gb|AEE79089.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|332645569|gb|AEE79090.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|332645570|gb|AEE79091.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
Length = 342
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ L + F++ G+V EA +I D RSKG+G+VT S+ +E QKA+ +NG
Sbjct: 263 NLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGAD 322
Query: 124 LDGRVIFVD--NVRPSR 138
LDGR I V RP R
Sbjct: 323 LDGRQIRVSEAEARPPR 339
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF+ LA F G V +I D RS+G+G+VT ST E + A NG
Sbjct: 105 NLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYE 164
Query: 124 LDGRVIFVDNVRPSRRYNTDASLARQP 150
+GR + V+ P + + S +R P
Sbjct: 165 FEGRPLRVNAGPPPPK--REESFSRGP 189
>gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 326
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ L + F++ G+V EA +I D RSKG+G+VT S+ +E QKA+ +NG
Sbjct: 247 NLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGAD 306
Query: 124 LDGRVIFVD--NVRPSR 138
LDGR I V RP R
Sbjct: 307 LDGRQIRVSEAEARPPR 323
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF+ LA F G V +I D RS+G+G+VT ST E + A NG
Sbjct: 97 NLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYE 156
Query: 124 LDGRVIFVDNVRPSRRYNTDASLARQP 150
+GR + V+ P + + S +R P
Sbjct: 157 FEGRPLRVNAGPPPPK--REESFSRGP 181
>gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 334
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ L + F++ G+V EA +I D RSKG+G+VT S+ +E QKA+ +NG
Sbjct: 255 NLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGAD 314
Query: 124 LDGRVIFVD--NVRPSR 138
LDGR I V RP R
Sbjct: 315 LDGRQIRVSEAEARPPR 331
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF+ LA F G V +I D RS+G+G+VT ST E + A NG
Sbjct: 105 NLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYE 164
Query: 124 LDGRVIFVDNVRPSRRYNTDASLARQP 150
+GR + V+ P + + S +R P
Sbjct: 165 FEGRPLRVNAGPPPPK--REESFSRGP 189
>gi|148226721|ref|NP_001086950.1| RNA binding motif protein 39 [Xenopus laevis]
gi|50414893|gb|AAH77813.1| Rnpc2-prov protein [Xenopus laevis]
Length = 540
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 255 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 314
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 315 LAGRPMKVGHV----TERTDASNA 334
>gi|47212427|emb|CAF93583.1| unnamed protein product [Tetraodon nigroviridis]
Length = 500
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T+EML F FG++ +++D RSKGYG++T + E A+KAL +NG
Sbjct: 237 SLHFNITEEMLRGIFEPFGRIENIQLMVDSDTGRSKGYGFITFADAECAKKALEQLNGFE 296
Query: 124 LDGRVIFVDNV 134
L GR + V +V
Sbjct: 297 LAGRPMKVGHV 307
>gi|374812290|ref|ZP_09716027.1| RNP-1 like RNA-binding protein [Treponema primitia ZAS-1]
Length = 99
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++TT++ L + FS+FG V + II D SKG+G++ T+EEA A+ NG+
Sbjct: 9 NLSYNTTEDGLRNLFSEFGSVASSKIIFDRETGNSKGFGFIEMGTDEEASAAIAGTNGRE 68
Query: 124 LDGRVIFVDNV--RPSR 138
DGR + V+ +P R
Sbjct: 69 FDGRQLRVNEAMDKPRR 85
>gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT_348440 [Arabidopsis lyrata subsp.
lyrata]
gi|297323759|gb|EFH54180.1| hypothetical protein ARALYDRAFT_348440 [Arabidopsis lyrata subsp.
lyrata]
Length = 339
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ L + F++ G+V EA +I D RSKG+G+VT S+ +E QKA+ +NG
Sbjct: 260 NLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGAD 319
Query: 124 LDGRVIFVD--NVRPSR 138
LDGR I V RP R
Sbjct: 320 LDGRQIRVSEAEARPPR 336
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF+ LA F G V +I D RS+G+G+VT ST E + A NG
Sbjct: 105 NLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYE 164
Query: 124 LDGRVIFVDNVRPSRRYNTDASLARQP 150
+GR + V+ P + + S +R P
Sbjct: 165 FEGRPLRVNAGPPPPK--REESFSRGP 189
>gi|302926643|ref|XP_003054335.1| hypothetical protein NECHADRAFT_74951 [Nectria haematococca mpVI
77-13-4]
gi|256735276|gb|EEU48622.1| hypothetical protein NECHADRAFT_74951 [Nectria haematococca mpVI
77-13-4]
Length = 178
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S S+ T + L F +FG V EA ++ D RS+G+G+V + E +AQKA+ MN
Sbjct: 11 SPSWHTEEGTLRQKFEEFGPVEEAVVVKDRDTGRSRGFGFVRYTQEGDAQKAIATMNNVE 70
Query: 124 LDGRVIFVDNV 134
DGR I VD
Sbjct: 71 FDGRTIRVDKA 81
>gi|164427760|ref|XP_965121.2| hypothetical protein NCU02736 [Neurospora crassa OR74A]
gi|157071873|gb|EAA35885.2| predicted protein [Neurospora crassa OR74A]
Length = 200
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S++T ML F +FG V EA ++ D RS+G+G+V + +A+ A+ +M+G+
Sbjct: 8 GLSWNTDDNMLRAKFEEFGAVEEAVVVKDRDTGRSRGFGFVRYGNDADAENAIANMDGQE 67
Query: 124 LDGRVIFVD 132
DGR + VD
Sbjct: 68 FDGRRVRVD 76
>gi|219363077|ref|NP_001137027.1| uncharacterized protein LOC100217196 [Zea mays]
gi|194698058|gb|ACF83113.1| unknown [Zea mays]
Length = 287
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++ T EML +AF + G V A ++ D RS+GYG+V ST EE +AL +NG
Sbjct: 213 NLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSSLNGME 272
Query: 124 LDGRVIFVD 132
++GR + V+
Sbjct: 273 MEGREMRVN 281
>gi|409081762|gb|EKM82121.1| hypothetical protein AGABI1DRAFT_112242 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198598|gb|EKV48524.1| hypothetical protein AGABI2DRAFT_192114 [Agaricus bisporus var.
bisporus H97]
Length = 275
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%)
Query: 63 ISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGK 122
+S T + L D FS+FG+V + TI+ D +RS+G+G++ ST +EA + + ++NG
Sbjct: 87 FGLSIRTVERDLDDEFSRFGRVEKVTIVYDQRSDRSRGFGFIKMSTVDEAARCIQELNGV 146
Query: 123 LLDGRVIFVD 132
L+GR I VD
Sbjct: 147 ELNGRRIRVD 156
>gi|356538789|ref|XP_003537883.1| PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Glycine
max]
Length = 140
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFS +G + E+ II D RS+G+G+VT ++E + A+
Sbjct: 8 YRCFVGGLAWATDDHALEKAFSHYGNIVESKIINDRETGRSRGFGFVTFASENSMKDAIE 67
Query: 118 DMNGKLLDGRVIFVD 132
MNG+ LDGR I V+
Sbjct: 68 GMNGQNLDGRNITVN 82
>gi|346223551|ref|ZP_08844693.1| RNP-1 like RNA-binding protein [Anaerophaga thermohalophila DSM
12881]
Length = 159
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S +TT + L D F+++G+V A +IMD SK +G+V EE AQKA+ D+N L
Sbjct: 64 LSAATTSDDLNDLFAEYGEVVSAKVIMDRDTGASKRFGFVEMKDEESAQKAIKDLNECLF 123
Query: 125 DGRVIFVDNVRP 136
D I V RP
Sbjct: 124 DNSPIVVKQARP 135
>gi|342882418|gb|EGU83098.1| hypothetical protein FOXB_06359 [Fusarium oxysporum Fo5176]
Length = 113
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++++TT + L FS+FG+VT+A ++ D RS+G+G+VT S++EEA A+ MN +
Sbjct: 8 GLAWATTSDTLRAKFSEFGEVTDAIVMTDRETGRSRGFGFVTFSSQEEASAAIEAMNEQE 67
Query: 124 LDGRVIFV 131
+GR I V
Sbjct: 68 FEGRQIRV 75
>gi|15238546|ref|NP_200794.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332009860|gb|AED97243.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 157
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 44 VRPSSDLIMQ--LVNVSFWRCIS---VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRS 98
+RP S + + L+ C+S +S TT + L F+ F A +I D R
Sbjct: 52 IRPRSSISKRRRLIGGKTLTCVSNSGLSAYTTDQSLRQLFAPF-----ARLIKDQQTQRP 106
Query: 99 KGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135
KG+G++T +E++AQKAL +NGK+++GR+IFV+ +
Sbjct: 107 KGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAK 143
>gi|148684930|gb|EDL16877.1| mCG114434 [Mus musculus]
Length = 153
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F+T ++ L D FS FG ++E ++ D RS+G+ ++T + E A A+ MNG+
Sbjct: 12 GLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSQGFDFITFTNPEHASDAMRAMNGES 71
Query: 124 LDGRVIFVDNV 134
LDGR I VD+
Sbjct: 72 LDGRQIRVDHA 82
>gi|212528572|ref|XP_002144443.1| ribosome biogenesis (Nop4), putative [Talaromyces marneffei ATCC
18224]
gi|210073841|gb|EEA27928.1| ribosome biogenesis (Nop4), putative [Talaromyces marneffei ATCC
18224]
Length = 728
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ S T E L + FSQ + AT+++D +SKGYG+VT + E+AQ+AL + NG
Sbjct: 53 SLPASATTEKLTEFFSQSYVLKHATVVIDPETKKSKGYGFVTFADIEDAQRALEEFNGAD 112
Query: 124 LDGRVIFVDNVRPSRR 139
+GR I V+ +P +R
Sbjct: 113 FEGRKIKVEVAQPRKR 128
Score = 39.7 bits (91), Expect = 0.46, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
+ LA F FG+V A + N G+G+V + A+KAL +NGK +DGR + V
Sbjct: 175 DQLAALFRSFGKVKHAVVPKK--GNVQAGFGFVVLRGRKNAEKALEAVNGKEVDGRTLAV 232
Query: 132 D 132
D
Sbjct: 233 D 233
>gi|224099981|ref|XP_002311696.1| predicted protein [Populus trichocarpa]
gi|118486835|gb|ABK95252.1| unknown [Populus trichocarpa]
gi|222851516|gb|EEE89063.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+S T E L AF ++G V A ++ D +S+GYG+V ST+EE + AL +NG
Sbjct: 204 NLSWSVTSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKEELETALQSLNGVE 263
Query: 124 LDGRVIFV 131
L+GR + V
Sbjct: 264 LEGRALRV 271
>gi|145298735|ref|YP_001141576.1| RNA-binding protein [Aeromonas salmonicida subsp. salmonicida A449]
gi|142851507|gb|ABO89828.1| RNA-binding protein [Aeromonas salmonicida subsp. salmonicida A449]
Length = 92
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ T + L FSQFGQV + II+D +SKG+G++ +A+KA+ ++G
Sbjct: 7 NLSYRMTADELTTVFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGDAEKAIAGLHGTE 66
Query: 124 LDGRVIFVDNVRPSRRYNTDASLAR 148
+ GR I V+ +P TDA R
Sbjct: 67 IGGRTITVNQAKPK----TDAPRGR 87
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L AFS FG +T A ++M+ G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L D F +FG ++ D +SKG+G+V+ E+AQKA+ +MNGK L+G+ I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S ++L D S FG + ++ D +N SKGYG+V T E A++A+ MNG LL+ R
Sbjct: 109 SINNKVLYDTASAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Query: 128 VIFV 131
+FV
Sbjct: 167 KVFV 170
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L AFS FG +T A ++M+ G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 276 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L D F +FG ++ D +SKG+G+V+ E+AQKA+ +MNGK L+G+ I+V
Sbjct: 173 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 231
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 95 KNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
+N SKGYG+V T E A++A+ MNG LL+ R +FV
Sbjct: 102 ENGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFV 138
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
T+ ML + FS+ G + + D+ RS Y YV ++A++AL MN ++ G+ +
Sbjct: 23 TEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTMNFDVIKGKPV 82
Query: 130 FV 131
+
Sbjct: 83 RI 84
>gi|246771225|gb|ACS94937.1| putative glycine-rich RNA-binding protein [Tamarix hispida]
Length = 143
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Query: 61 RCIS--------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEA 112
RC+S +S+ T + L DAFS FG+VT+A +I D RS+G+G+V E A
Sbjct: 30 RCMSSSRLFVGGLSWGTDDQSLKDAFSSFGEVTDAKVITDRETGRSRGFGFVNFVDNEAA 89
Query: 113 QKALVDMNGKLLDGRVIFV 131
AL M+G L+GR I V
Sbjct: 90 GSALSSMDGVELNGRSIRV 108
>gi|221041852|dbj|BAH12603.1| unnamed protein product [Homo sapiens]
Length = 337
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 99 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 158
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 159 LAGRPMKVGHVTE----RTDASSA 178
>gi|350535477|ref|NP_001233126.1| cold-inducible RNA-binding protein [Sus scrofa]
gi|330847371|gb|AEC46651.1| cold inducible RNA binding protein transcript variant 3 [Sus
scrofa]
Length = 144
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+ +G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRDFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|356538787|ref|XP_003537882.1| PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Glycine
max]
Length = 170
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 52 MQLVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTE 109
M +V F RC +++ T + L AFS +G + E+ +I D RS+G+G+VT ++E
Sbjct: 1 MASADVEF-RCFVGGLAWVTGNDALEKAFSIYGDIVESKVINDRETGRSRGFGFVTFASE 59
Query: 110 EEAQKALVDMNGKLLDGRVIFVDNV--RPSR 138
+ + A+ MNG+ LDGR I V+ R SR
Sbjct: 60 QSMKDAIAGMNGQDLDGRNITVNEAQTRASR 90
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L AFS FG +T A ++M+ G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S ++L D S FG + ++ D +N SKGYG+V T E A++A+ MNG LL+ R
Sbjct: 109 SINNKVLYDTVSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGTLLNDR 166
Query: 128 VIFV 131
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L D F +FG ++ D +SKG+G+V+ E+A+KA+ +MNGK L+G+ I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYV 263
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
T+ ML + FS+ G + + D+ RS Y YV ++A++AL MN ++ G+ +
Sbjct: 23 TEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTMNFDVIKGKPV 82
Query: 130 FV 131
+
Sbjct: 83 RI 84
>gi|302338833|ref|YP_003804039.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM 11293]
gi|301636018|gb|ADK81445.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM 11293]
Length = 93
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+S+T+ L D F Q+GQV A I++D RS+G+G+V ++ A+ A+ ++G
Sbjct: 9 NLSYSSTEPGLEDLFGQYGQVVSAKIVLDRETKRSRGFGFVEMEQDDAAEAAISALDGYE 68
Query: 124 LDGRVIFVDNV-----RPSRRYNTD 143
DGR + V+ RP R ++ D
Sbjct: 69 FDGRRLRVNEAMERERRPRRDFHRD 93
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L AFS FG +T A ++M+ G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L D F +FG ++ D +SKG+G+V+ E+AQKA+ +MNGK L+G+ I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S ++L D S FG + ++ D +N SKGYG+V T E A++A+ MNG LL+ R
Sbjct: 109 SINNKVLYDTVSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGTLLNDR 166
Query: 128 VIFV 131
+FV
Sbjct: 167 KVFV 170
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
T+ ML + FS+ G + + D+ RS Y YV ++A++AL MN ++ G+ +
Sbjct: 23 TEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTMNFDVIKGKPV 82
Query: 130 FV 131
+
Sbjct: 83 RI 84
>gi|355715684|gb|AES05403.1| RNA binding motif protein 39 [Mustela putorius furo]
Length = 271
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +NG
Sbjct: 136 SLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 195
Query: 124 LDGRVIFVDNVRPSRRYNTDASLA 147
L GR + V +V TDAS A
Sbjct: 196 LAGRPMKVGHV----TERTDASSA 215
>gi|444732647|gb|ELW72929.1| Polyadenylate-binding protein 5 [Tupaia chinensis]
Length = 382
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L + FS++G +I D G +SKG+G+V T E AQKA++D++GK +DG+V++V
Sbjct: 213 EKLKELFSEYGPTESVKVIRDAG-GKSKGFGFVRYETHEAAQKAVLDLHGKSMDGKVLYV 271
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L + FS FG ++ A ++M++G+ KG+G V S+ EEA KA+ +MNG+++ + + V
Sbjct: 316 EKLKEEFSSFGSISRAKVMMEVGQ--GKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHV 373
Query: 132 DNVRPSRRY 140
+ RR+
Sbjct: 374 TLGQARRRW 382
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 78 FSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
FS FG + ++ D N SKGY YV + A +A+ MNG L+ R ++V
Sbjct: 126 FSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>gi|386812367|ref|ZP_10099592.1| RNA-binding protein [planctomycete KSU-1]
gi|386404637|dbj|GAB62473.1| RNA-binding protein [planctomycete KSU-1]
Length = 115
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L AF FG+VT AT+I DI SKG+G+V + EAQ A+ +N K L G++I V+
Sbjct: 17 LRQAFEVFGKVTSATVIKDIFSGTSKGFGFVEMPAKAEAQAAINGLNSKELKGKMIVVNE 76
Query: 134 VRP 136
RP
Sbjct: 77 ARP 79
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
T E L + FS FG+ ++ D K RS+G+G+V + E+AQKA+ +MNGK ++G+++
Sbjct: 203 TDEKLKEVFSAFGRTLSVRVMKD-EKGRSRGFGFVNYAHHEDAQKAVNEMNGKEINGKIL 261
Query: 130 FVDNVRPSRRYNTDASLARQ 149
+V R +R L R+
Sbjct: 262 YVG--RAQKRLERQGELKRK 279
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D FS FG + ++ D + SKGYG+V T+E A +A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--EKGSKGYGFVHFETQEAANRAIETMNGMLLNDR 166
Query: 128 VIFVDNVR 135
+FV + +
Sbjct: 167 KVFVGHFK 174
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S E L F+ +G +T A ++ D ++SKG+G+V S+ EEA KA+ +MNG+++ +
Sbjct: 304 SIDDERLRKEFAPYGTITSAKVMTD--GSQSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 128 VIFV 131
++V
Sbjct: 362 PLYV 365
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
T+ ML FS G + + DI RS GY YV +A+ AL MN ++ GR I
Sbjct: 23 TEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADAECALDTMNYDVIKGRPI 82
Query: 130 FV 131
+
Sbjct: 83 RI 84
>gi|339501141|ref|YP_004699176.1| RNP-1 like RNA-binding protein [Spirochaeta caldaria DSM 7334]
gi|338835490|gb|AEJ20668.1| RNP-1 like RNA-binding protein [Spirochaeta caldaria DSM 7334]
Length = 116
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++T+++ L + FS FG V A II D SKG+G+V ST+EEA A+ NG+
Sbjct: 30 NLSYNTSEDSLRNLFSNFGSVASAKIIFDRETGNSKGFGFVEMSTDEEASAAIAGTNGRE 89
Query: 124 LDGRVIFVDNV--RPSR 138
+GR + V+ +P R
Sbjct: 90 FEGRQLRVNEAMDKPRR 106
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L AFS FG +T A ++M+ G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L D F +FG ++ D +SKG+G+V+ E+AQKA+ +MNGK L G+ I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYV 263
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D S FG + ++ D +N SKGYG+V T E A++A+ MNG LL+ R
Sbjct: 109 SINNKALYDTVSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Query: 128 VIFV 131
+FV
Sbjct: 167 KVFV 170
>gi|39996426|ref|NP_952377.1| RNA-binding protein [Geobacter sulfurreducens PCA]
gi|409911860|ref|YP_006890325.1| RNA-binding protein [Geobacter sulfurreducens KN400]
gi|39983306|gb|AAR34700.1| RNA-binding protein [Geobacter sulfurreducens PCA]
gi|298505436|gb|ADI84159.1| RNA-binding protein [Geobacter sulfurreducens KN400]
Length = 107
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S+ T++ L FS G VT II D RSKG GYV TEEEA++A+ ++G LL
Sbjct: 10 MSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALL 69
Query: 125 DGRVIFVDNVRPSR 138
RVI V RP +
Sbjct: 70 RNRVITVSVARPQK 83
>gi|333379577|ref|ZP_08471298.1| hypothetical protein HMPREF9456_02893 [Dysgonomonas mossii DSM
22836]
gi|332884970|gb|EGK05223.1| hypothetical protein HMPREF9456_02893 [Dysgonomonas mossii DSM
22836]
Length = 99
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ L F ++G + A +IMD +RSKGYG+V E+A KA+ +NG
Sbjct: 7 GLSYDVNDADLNTFFKEYGVINSAKVIMDRSTSRSKGYGFVEMDNNEDANKAISKLNGVE 66
Query: 124 LDGRVIFVDNVRPSRRYNTDA 144
DGR I V RP + N ++
Sbjct: 67 YDGRTISVSEARPRQERNNNS 87
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L AFS FG +T A ++M+ G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L D F +FG ++ D +SKG+G+V+ E+AQKA+ +MNGK L+G+ I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S ++L D S FG + ++ D +N SKGYG+V T E A++A+ MNG LL+ R
Sbjct: 109 SINNKVLYDTVSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGTLLNDR 166
Query: 128 VIFV 131
+FV
Sbjct: 167 KVFV 170
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
T+ ML + FS+ G + + D+ RS Y YV ++A+ AL MN ++ G+ +
Sbjct: 23 TEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAEHALDTMNFDVIKGKPV 82
Query: 130 FV 131
+
Sbjct: 83 RI 84
>gi|299751777|ref|XP_001830476.2| glycine-rich RNA binding protein [Coprinopsis cinerea okayama7#130]
gi|298409530|gb|EAU91356.2| glycine-rich RNA binding protein [Coprinopsis cinerea okayama7#130]
Length = 142
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 46/69 (66%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++TT + L AFSQ+G V ++ ++ D RS+G+G+VT S EEA A+ ++ +
Sbjct: 9 NLSWNTTDDSLRQAFSQYGNVLDSIVMRDRDTGRSRGFGFVTYSATEEADAAIASLHDQE 68
Query: 124 LDGRVIFVD 132
LDGR I V+
Sbjct: 69 LDGRRIKVN 77
>gi|224071049|ref|XP_002303346.1| predicted protein [Populus trichocarpa]
gi|222840778|gb|EEE78325.1| predicted protein [Populus trichocarpa]
Length = 164
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ S ++ L FS FG++ E ++ D RSK Y ++ +++++A AL +M+ K
Sbjct: 60 NIGHSISEATLQKEFSNFGEIAEVKLVKDETIKRSKPYAFIQYTSQDDAILALENMDRKT 119
Query: 124 LDGRVIFVDNVRPSR 138
LDGR+IFVD +P +
Sbjct: 120 LDGRLIFVDLAKPGK 134
>gi|367006051|ref|XP_003687757.1| hypothetical protein TPHA_0K01910 [Tetrapisispora phaffii CBS 4417]
gi|357526062|emb|CCE65323.1| hypothetical protein TPHA_0K01910 [Tetrapisispora phaffii CBS 4417]
Length = 416
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S+S E L + F G V A ++++ G +RS+GYGYV S + A+KA+ +M+GK +
Sbjct: 164 LSWSIDDEWLKNEFDHIGGVIGARVMLERGTDRSRGYGYVDFSDKSYAEKAIKEMHGKEI 223
Query: 125 DGRVIFVD 132
DGR I D
Sbjct: 224 DGREINCD 231
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF+ ++ + + FS+FG++ + + KG+GYV ++A+KAL + G+
Sbjct: 265 NLSFNADRDSIWEMFSKFGEIVSVRLPTHPETEQPKGFGYVQYGNIDDAKKALEALQGEY 324
Query: 124 LDGRVIFVDNVRP 136
+D R + +D P
Sbjct: 325 IDNRPVRLDYSTP 337
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 74 LADAFSQFGQVTEATIIMD-IGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132
L D FSQFG++ ++ D IG S+G+G+V EEAQKA++DMNGK + GR+++V
Sbjct: 207 LQDLFSQFGKMLSVKVMRDDIG--HSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVG 264
Query: 133 NVRPSRRYNTDASLARQ 149
R +R L R+
Sbjct: 265 --RAQKRVERQNELKRR 279
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D FS FG + ++ D + S+G+G+V T E A +A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHEAAHQAIATMNGMLLNDR 166
Query: 128 VIFVDNVRPSRR 139
+FV + + SRR
Sbjct: 167 KVFVGHFK-SRR 177
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S E L FS +G +T A ++ + G SKG+G+V S+ EEA KA+ +MNG+++ +
Sbjct: 304 SIDDEKLRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 128 VIFV 131
++V
Sbjct: 362 PLYV 365
>gi|297733872|emb|CBI15119.3| unnamed protein product [Vitis vinifera]
Length = 163
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 8/80 (10%)
Query: 61 RCIS--------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEA 112
RC+S +S+ST L +AF ++G+V EA +I+D RS+G+G+VT ++ EEA
Sbjct: 35 RCMSSSKLFIGGLSYSTDDTSLREAFHKYGEVIEARVIVDRETGRSRGFGFVTFTSSEEA 94
Query: 113 QKALVDMNGKLLDGRVIFVD 132
A+ ++G+ L GR + V+
Sbjct: 95 SSAIQALDGQDLHGRRVRVN 114
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L AFS FG +T A ++M+ G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D S FG + ++ D +N SKGYG+V T E A++A+ MNG LL+GR
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Query: 128 VIFV 131
+FV
Sbjct: 167 KVFV 170
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L D F +FG ++ D +SKG+G+V+ E+AQKA+ +MNGK L+G+ I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|71000080|ref|XP_754757.1| glycine-rich RNA-binding protein [Aspergillus fumigatus Af293]
gi|66852394|gb|EAL92719.1| glycine-rich RNA-binding protein, putative [Aspergillus fumigatus
Af293]
gi|159127765|gb|EDP52880.1| glycine-rich RNA-binding protein, putative [Aspergillus fumigatus
A1163]
Length = 118
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+++ TT + L F +G V EA ++ D NRS+G+G+V S++ EA A+ MN +
Sbjct: 8 GLAWHTTDDALRQGFEPYGVVEEAIVVKDRDTNRSRGFGFVRFSSDTEADAAMDAMNNQE 67
Query: 124 LDGRVIFVDNV--RPSR 138
DGR I VD RP+R
Sbjct: 68 FDGRTIRVDKASERPAR 84
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 74 LADAFSQFGQVTEATIIMD-IGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132
L D FSQFG++ ++ D IG S+G+G+V EEAQKA++DMNGK + GR+++V
Sbjct: 207 LQDLFSQFGKMLSVKVMRDDIG--HSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVG 264
Query: 133 NVRPSRRYNTDASLARQ 149
R +R L R+
Sbjct: 265 --RAQKRVERQNELKRR 279
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D FS FG + ++ D + S+G+G+V T E A +A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHEAAHQAIATMNGMLLNDR 166
Query: 128 VIFVDNVRPSRR 139
+FV + + SRR
Sbjct: 167 KVFVGHFK-SRR 177
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S E L FS +G +T A ++ + G SKG+G+V S+ EEA KA+ +MNG+++ +
Sbjct: 304 SIDDEKLRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 128 VIFV 131
++V
Sbjct: 362 PLYV 365
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L AFS FG +T A ++M+ G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLQKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D S FG + ++ D +N SKGYG+V T E A++A+ MNG LL+GR
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNGR 166
Query: 128 VIFV 131
+FV
Sbjct: 167 KVFV 170
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L D F +FG ++ D +SKG+G+V+ E+AQKA+ +MNGK L+G+ I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|330847369|gb|AEC46650.1| cold inducible RNA binding protein transcript variant 2 [Sus
scrofa]
Length = 182
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+ +G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRDFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L AFS FG +T A ++M+ G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLQKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D S FG + ++ D +N SKGYG+V T E A++A+ MNG LL+GR
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNGR 166
Query: 128 VIFV 131
+FV
Sbjct: 167 KVFV 170
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L D F +FG ++ D +SKG+G+V+ E+AQKA+ +MNGK L+G+ I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|189465920|ref|ZP_03014705.1| hypothetical protein BACINT_02283 [Bacteroides intestinalis DSM
17393]
gi|189434184|gb|EDV03169.1| hypothetical protein BACINT_02283 [Bacteroides intestinalis DSM
17393]
Length = 128
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++T + L + FSQ+G+VT A II D RS+G+G+V +EE QKA+ +N
Sbjct: 7 NLSWNTNSDSLQELFSQYGEVTSAYIINDRETGRSRGFGFVEMPNDEEGQKAIDTLNETE 66
Query: 124 LDGRVIFVDNVRP 136
+G+ I V RP
Sbjct: 67 FEGKNIAVSVARP 79
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L AFS FG +T A ++M+ G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D S FG + ++ D +N SKGYG+V T E A++A+ MNG LL+GR
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNGR 166
Query: 128 VIFV 131
+FV
Sbjct: 167 KVFV 170
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L D F +FG ++ D +SKG+G+V+ E+AQKA+ +MNGK L+G+ I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L AFS FG +T A ++M+ G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L D F +FG ++ D +SKG+G+V+ E+AQKA+ +MNGK L G+ I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYV 263
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D S FG + ++ D +N SKGYG+V T E A++A+ MNG LL+ R
Sbjct: 109 SINNKALYDTVSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Query: 128 VIFV 131
+FV
Sbjct: 167 KVFV 170
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L AFS FG +T A ++M+ G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D S FG + ++ D +N SKGYG+V T E A++A+ MNG LL+GR
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Query: 128 VIFV 131
+FV
Sbjct: 167 KVFV 170
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L D F +FG ++ D +SKG+G+V+ E+AQKA+ +MNGK L+G+ I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|9293999|dbj|BAB01902.1| unnamed protein product [Arabidopsis thaliana]
Length = 396
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL- 123
+SF T+++ L AF FG++ E IIMD RSKGY ++ +TEE A AL +MNGK+
Sbjct: 289 LSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKVN 348
Query: 124 LDGRVIFVDNVRPSRRY 140
LD R + ++ ++ Y
Sbjct: 349 LDFRDLKAKSLLSTQNY 365
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L AFS FG +T A ++M+ G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D S FG + ++ D +N SKGYG+V T E A++A+ MNG LL+GR
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Query: 128 VIFV 131
+FV
Sbjct: 167 KVFV 170
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L D F +FG ++ D +SKG+G+V+ E+AQKA+ +MNGK L+G+ I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L AFS FG +T A ++M+ G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D S FG + ++ D +N SKGYG+V T E A++A+ MNG LL+GR
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Query: 128 VIFV 131
+FV
Sbjct: 167 KVFV 170
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L D F +FG ++ D +SKG+G+V+ E+AQKA+ +MNGK L+G+ I+V
Sbjct: 205 ERLKDLFGKFGPALSVELMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|357119205|ref|XP_003561336.1| PREDICTED: uncharacterized protein LOC100827239 [Brachypodium
distachyon]
Length = 314
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T + L +AF +FG+V +A I+++ NR +G+G+VT S + A+ +M+ K
Sbjct: 13 GLSFHTDERKLEEAFRRFGKVVDAQIMLERHTNRHRGFGFVTFSDPRAVESAISEMHTKE 72
Query: 124 LDGRVIFVDNVRPSRRYNTD 143
LDGR I V+ P + NTD
Sbjct: 73 LDGRTISVNRAEP--KMNTD 90
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S T E L++ FS+FG VT I+ D + S+G G+V ST EEA +AL +MNGK++ G+
Sbjct: 316 SVTDEKLSELFSEFGTVTSCKILRDP-QGISRGSGFVAFSTPEEATRALAEMNGKMVAGK 374
Query: 128 VIFV 131
++V
Sbjct: 375 PLYV 378
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L D FS FG + I MD SKGYG+V EE AQ A+ +NG LL+ + ++V +
Sbjct: 128 LYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGH 186
Query: 134 VRPSRRYNTDASLA 147
+ R+ + D +L+
Sbjct: 187 FQ--RKQDRDNALS 198
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 53 QLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEA 112
QL S + + T L D F+Q GQV I D+ +S GYGYV S +A
Sbjct: 20 QLTTTSLY-VGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDA 78
Query: 113 QKALVDMNGKLLDGRVIFV 131
KA+ +N L+ + I +
Sbjct: 79 AKAMDVLNFTPLNNKPIRI 97
Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S S T + L + F ++G +T A ++ D+ +SK +G+V + A +A+ +NGK
Sbjct: 209 NLSESVTDDDLKNTFGEYGTITSAVVMRDV-DGKSKCFGFVNFENADAAAEAVEALNGKK 267
Query: 124 LDGRVIFVDNVRPSRRYNTDASLARQPAQSPEE 156
D + +V ++Y + L + QS +E
Sbjct: 268 FDDKEWYVGKAL--KKYERELELKERHEQSMKE 298
>gi|209976406|gb|ACJ04160.1| putative glycine-rich RNA-binding protein [Chorispora bungeana]
Length = 175
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 52 MQLVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTE 109
M +V F RC ++++T L AFSQ+G V ++ II D RS+G+G+VT E
Sbjct: 1 MASADVEF-RCFVGGLAWATDDRALETAFSQYGDVVDSKIINDRETGRSRGFGFVTFKDE 59
Query: 110 EEAQKALVDMNGKLLDGRVIFV 131
+ + A+ MNG+ LDGR I V
Sbjct: 60 KSMKDAIEGMNGQDLDGRSITV 81
>gi|393217699|gb|EJD03188.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 142
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++TT + L AFS +GQV ++ ++ D RS+G+G+VT S+E EA A+ +N +
Sbjct: 9 NLSWNTTDDTLRKAFSDYGQVVDSIVMRDRDTGRSRGFGFVTFSSETEATGAISALNEQE 68
Query: 124 LDGRVIFVD--NVRP 136
+GR I V+ N RP
Sbjct: 69 FEGRRIKVNFANARP 83
>gi|317479260|ref|ZP_07938395.1| RNA recognition domain-containing protein [Bacteroides sp. 4_1_36]
gi|316904548|gb|EFV26367.1| RNA recognition domain-containing protein [Bacteroides sp. 4_1_36]
Length = 101
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++FSTT L D FS++G+V+ A II D RS+G+G+V + QKA+ ++NG
Sbjct: 7 GLNFSTTDADLNDLFSEYGEVSSARIITDRETRRSRGFGFVEMPDDAAGQKAIDELNGAE 66
Query: 124 LDGRVIFVDNVRP 136
D + I V+ RP
Sbjct: 67 FDHKQISVNVARP 79
>gi|301310455|ref|ZP_07216394.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides sp.
20_3]
gi|423336704|ref|ZP_17314451.1| hypothetical protein HMPREF1059_00403 [Parabacteroides distasonis
CL09T03C24]
gi|300832029|gb|EFK62660.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides sp.
20_3]
gi|409240584|gb|EKN33362.1| hypothetical protein HMPREF1059_00403 [Parabacteroides distasonis
CL09T03C24]
Length = 123
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++ + E L F+ +G++T A +IMD RS+G+G+V S +E A+KA+ ++N
Sbjct: 7 NLSYNISDEDLRQLFADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIEELNQAS 66
Query: 124 LDGRVIFVDNVRP 136
DG+VI + RP
Sbjct: 67 YDGKVINITEARP 79
>gi|390342940|ref|XP_001198098.2| PREDICTED: RNA-binding protein 39-like [Strongylocentrotus
purpuratus]
Length = 666
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 11/103 (10%)
Query: 43 IVRPS---------SDLIMQLVNVSFWRCI--SVSFSTTKEMLADAFSQFGQVTEATIIM 91
IV+PS ++ +Q VN R S+ ++ T+ ML F FG++ ++M
Sbjct: 279 IVQPSHAEKNRSAGQNVTLQKVNSGPMRLYVGSLHYNITEAMLRGIFEPFGKIDNIQLMM 338
Query: 92 DIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134
D NRSKGYG++T E+A++AL +NG L GR + V++V
Sbjct: 339 DTDANRSKGYGFITFHDAEDAKRALDQLNGFELAGRPMKVNHV 381
>gi|325296731|ref|NP_001191601.1| ELAV 2-like protein [Aplysia californica]
gi|65307079|gb|AAY42042.1| ELAV 2-like protein [Aplysia californica]
Length = 325
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ F+ T L FS FG V + I++D KN+ KGYG+VT + +EAQ A+ +NG
Sbjct: 247 NIGFNATDRTLWQLFSPFGTVQKVNIMLDHEKNQCKGYGFVTMTNYQEAQNAINCLNGYF 306
Query: 124 LDGRVIFV 131
GRV+ V
Sbjct: 307 FQGRVLQV 314
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 42 CIVRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGY 101
+ RP D I + N+ + R + V++ T+ L F +G++ ++ +++D+ SK
Sbjct: 92 ALARPGGDQI-KGANL-YIRNLPVAWKETE--LNKIFEPYGKIIQSRVLVDLSTGISKRV 147
Query: 102 GYVTSSTEEEAQKALVDMNGKLLDG 126
G+V T +EA+ A+ ++GK+ +G
Sbjct: 148 GFVLYDTRDEAENAIKCLSGKVPEG 172
>gi|378726298|gb|EHY52757.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 481
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E+L AFS FG V+EA ++ D+ RS+GYG+V +A+KAL M+G+ L R I V
Sbjct: 189 EVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALASMDGEWLGSRAIRV 248
Query: 132 D 132
+
Sbjct: 249 N 249
>gi|392568994|gb|EIW62168.1| RNA-binding domain-containing protein, partial [Trametes versicolor
FP-101664 SS1]
Length = 211
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGK-NRSKGYGYVTSSTEEEAQKALVDMNGK 122
+S TT+ L D FS+FG+V + I+ D + +RS+G+G++T ST +EA + + ++NG
Sbjct: 13 GLSIRTTERDLDDEFSRFGRVEKVVIVYDQRQSDRSRGFGFITMSTTDEAGRCIKELNGV 72
Query: 123 LLDGRVIFVD 132
L+GR I VD
Sbjct: 73 ELNGRRIRVD 82
>gi|345008357|ref|YP_004810711.1| RNP-1 like RNA-binding protein [Streptomyces violaceusniger Tu
4113]
gi|344034706|gb|AEM80431.1| RNP-1 like RNA-binding protein [Streptomyces violaceusniger Tu
4113]
Length = 86
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ TT LA F QFG+V +AT+I D RS+G+G+V E A+KA+ ++G
Sbjct: 9 NLSYQTTTRDLATLFGQFGEVLDATVITDRESGRSRGFGFVEMD-ETAAEKAMAQLDGTE 67
Query: 124 LDGRVIFVDNVRPSRR 139
+DGR + V R R
Sbjct: 68 MDGRAVTVTEARAVSR 83
>gi|165940926|gb|ABY75308.1| cytoplasmic 1 polyA binding protein [Ovis aries]
Length = 305
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L FS FG +T A ++M+ G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 37 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 94
>gi|1346180|sp|P49310.1|GRP1_SINAL RecName: Full=Glycine-rich RNA-binding protein GRP1A
gi|496233|gb|AAA59212.1| homology with RNA-binding proteins in meristematic tissue [Sinapis
alba]
Length = 166
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 60 WRCI--SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALV 117
+RC ++++T L AFSQ+G+V ++ II D RS+G+G+VT E+ + A+
Sbjct: 8 YRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIE 67
Query: 118 DMNGKLLDGRVIFVDNVR 135
MNG+ LDGR I V+ +
Sbjct: 68 GMNGQDLDGRSITVNEAQ 85
>gi|406985531|gb|EKE06283.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 83
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+ T + L F+ FG V +A +IMD RS+G+G+V TEE+A KAL + NGK
Sbjct: 8 NLSWEVTSDDLRAFFASFGTVIDAVVIMDRMTGRSRGFGFVEMETEEQANKAL-EGNGKD 66
Query: 124 LDGRVIFVDNVRP 136
L GR + V+ +P
Sbjct: 67 LKGRAMNVNMAKP 79
>gi|168061382|ref|XP_001782668.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665828|gb|EDQ52499.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 82
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ +T+E L +F QFG+V I+ D S+G+G+VT S A A+ DM+G+
Sbjct: 11 GLSYGSTEETLKRSFMQFGEVVSVKIVHDRDSGESRGFGFVTFSNPRAATVAIQDMDGRQ 70
Query: 124 LDGRVIFVDNVR 135
++GR I V+ VR
Sbjct: 71 IEGRTIRVNEVR 82
>gi|357152395|ref|XP_003576105.1| PREDICTED: uncharacterized protein LOC100823193 [Brachypodium
distachyon]
Length = 267
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 8/79 (10%)
Query: 61 RCIS--------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEA 112
RC+S +S++T + L +AF+ +G + +A II+D RS+G+G++T + E++A
Sbjct: 26 RCMSSSKIFVGGLSYNTDETGLREAFTHYGDIIDAKIIVDHESRRSRGFGFITYAAEDQA 85
Query: 113 QKALVDMNGKLLDGRVIFV 131
+ A++ ++GK L GR I V
Sbjct: 86 KAAIMALDGKELHGRNIRV 104
>gi|168988195|gb|ACA35266.1| nuclear transport family protein [Cucumis sativus]
Length = 565
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S+S T E+L AF ++G V A +I D +S+GYG+V+ ST+ E + AL +N
Sbjct: 31 NLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEMETALETINELE 90
Query: 124 LDGRVIFV 131
L+GRVI V
Sbjct: 91 LEGRVIRV 98
>gi|165875543|gb|ABY68599.1| poly(A) binding protein cytoplasmic 1 [Ovis aries]
Length = 289
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L FS FG +T A ++M+ G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 25 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 82
>gi|407927556|gb|EKG20446.1| hypothetical protein MPH_02256 [Macrophomina phaseolina MS6]
Length = 485
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
E+L AFS FGQV+EA ++ D+ RS+GYG+V +A+KAL M+G+ L R I
Sbjct: 194 EVLLQAFSAFGQVSEARVMWDMKTGRSRGYGFVAFRDRGDAEKALSSMDGEWLGSRAI 251
>gi|346319566|gb|EGX89167.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Cordyceps militaris CM01]
Length = 450
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
E+L AFS FG V+EA ++ D+ RS+GYG+V EA+KAL M+G+ L R I
Sbjct: 174 EILTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSSMDGEWLGSRAI 231
>gi|334705246|ref|ZP_08521112.1| RNA-binding protein [Aeromonas caviae Ae398]
Length = 81
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
T + L FSQFGQV + II+D +SKG+G++ EA+KA+ +++G + GR I
Sbjct: 2 TADELTTVFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGEAEKAIAELHGTEVGGRTI 61
Query: 130 FVDNVRPSRRYNTDASLAR 148
V+ +P TDA R
Sbjct: 62 TVNQAKP----KTDAPRGR 76
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D FS FG + ++ D GK SKGYG+V T E A A+ +NGK+L+G+
Sbjct: 108 SIDNKALYDTFSAFGNILSCKVVTD-GKGNSKGYGFVHYETSEAADSAIAKVNGKMLNGK 166
Query: 128 VIFVDNVRPSRRYNTDASLARQPAQSPEE 156
+++V + R P PE+
Sbjct: 167 IVYVGRFIARKE--------RTPGSDPEK 187
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 72 EMLADAFSQ--FGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
E L FS FGQ+T ++ D K S+G+G+V + E+A KA+ +MNGK++ + I
Sbjct: 302 EELHKLFSALPFGQITSCKVMSD-DKGNSRGFGFVCYTNPEDASKAVSEMNGKMVANKPI 360
Query: 130 FV 131
+V
Sbjct: 361 YV 362
>gi|154270523|ref|XP_001536116.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150409920|gb|EDN05308.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 633
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ S T E L + FSQ + AT+++D +SKGYG+VT + E+A KAL + NG
Sbjct: 48 SLPASATTESLTEYFSQSYPLKHATVVLDPQTKQSKGYGFVTFADHEDAAKALEEFNGSD 107
Query: 124 LDGRVIFVDNVRPSRR 139
DGR + ++ P R
Sbjct: 108 FDGRKLKIEVAEPRHR 123
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
+ L++ F FG+V A +I G S G+G+V + A+KAL +NGK +DGR + V
Sbjct: 167 DQLSNLFRSFGKVKHA-VIPKRGTKHS-GFGFVVLRGRKNAEKALNAVNGKEVDGRTLAV 224
Query: 132 D 132
D
Sbjct: 225 D 225
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L AFS FG +T A ++M+ G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D S FG + ++ D +N SKGYG+V T E A++A+ MNG LL+GR
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Query: 128 VIFV 131
+FV
Sbjct: 167 KVFV 170
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L D F +FG ++ D +SKG+G+V+ E+AQKA+ +MNGK L+G+ I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L + FSQFG++ ++ D S+G+G+V T EEAQKA+V MNGK + GR+++V
Sbjct: 207 LQELFSQFGKMLSVKVMRD-SSGHSRGFGFVNFETHEEAQKAVVHMNGKEVSGRLLYVG- 264
Query: 134 VRPSRRYNTDASLARQ 149
R +R L R+
Sbjct: 265 -RAQKRVERQNELKRR 279
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S E L FS +G +T A ++ + G SKG+G+V S+ EEA KA+ +MNG+++ +
Sbjct: 304 SIDDEKLRKEFSPYGMITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 128 VIFV 131
++V
Sbjct: 362 PLYV 365
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D FS FG + + D ++ S+G+G+V T E AQ A+ MNG LL+
Sbjct: 109 SIDNKALYDTFSTFGNILSCKVACD--EHGSRGFGFVHFETHEAAQHAINTMNGMLLNDH 166
Query: 128 VIFVDNVRPSRR 139
+FV + + SRR
Sbjct: 167 KVFVGHFK-SRR 177
>gi|344304396|gb|EGW34628.1| hypothetical protein SPAPADRAFT_57674 [Spathaspora passalidarum
NRRL Y-27907]
Length = 414
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S++ E L F G V A +IM+ +S+GYGYV ++ A+KALV+M GK +
Sbjct: 182 LSWNIDDEWLKREFEHIGGVIGARVIMERSTGKSRGYGYVDFDNKDSAEKALVEMQGKEI 241
Query: 125 DGRVIFVD 132
DGR I +D
Sbjct: 242 DGRPINLD 249
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF+ ++ L + F Q G V I + KG+GYV S+ +EA+ AL +NG+
Sbjct: 282 NLSFNAQRDNLFEIFGQHGTVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGEY 341
Query: 124 LDGRVIFVDNVRPSRRYNTDA 144
++GR +D P R N +A
Sbjct: 342 IEGRACRLDFSAP--RDNANA 360
>gi|421497038|ref|ZP_15944229.1| RNA-binding protein [Aeromonas media WS]
gi|407183931|gb|EKE57797.1| RNA-binding protein [Aeromonas media WS]
Length = 81
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
T + L + FSQFGQV + II+D +SKG+G++ +A+KA+ +++G + GR I
Sbjct: 2 TADELTNVFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGDAEKAIAELHGTEIGGRTI 61
Query: 130 FVDNVRPSRRYNTDASLAR 148
V+ +P TDA R
Sbjct: 62 TVNQAKPK----TDAPRGR 76
>gi|354545437|emb|CCE42165.1| hypothetical protein CPAR2_807140 [Candida parapsilosis]
Length = 420
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S E L AF++F EA ++ D+ +RS+GYG+VT S +E+A+ AL MNG L
Sbjct: 153 LSSEVNDEALKKAFNKFDSFKEAHVMWDMQTSRSRGYGFVTFSKQEDAELALQTMNGAWL 212
Query: 125 DGRVI 129
GR I
Sbjct: 213 GGRAI 217
>gi|327279534|ref|XP_003224511.1| PREDICTED: putative RNA-binding protein 3-like isoform 2 [Anolis
carolinensis]
Length = 231
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++F T ++ L FS FG ++E +I D RS+G+G++T + E A A+ MNG+
Sbjct: 91 GLNFDTDEQGLEQHFSSFGPISEVVVIKDKETQRSRGFGFITFANPEHASDAMRAMNGES 150
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD+ S
Sbjct: 151 VDGRQIRVDHAGKS 164
>gi|193211762|ref|YP_001997715.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
gi|193085239|gb|ACF10515.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
Length = 90
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ +S +++ L DAFS+FGQV A II D RSKG+G+V + EA++A+ MN K
Sbjct: 7 NLPYSVSEDDLRDAFSEFGQVHSANIITDKFSGRSKGFGFVDMPNDGEAREAIDAMNDKD 66
Query: 124 LDGRVIFVD 132
GR I V+
Sbjct: 67 FKGRTIKVN 75
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L FS FG +T A ++MD G RSKG+G+V S+ EEA KA+ DMNG+++ + ++V
Sbjct: 301 ERLRKEFSVFGTITSAKVMMDDG--RSKGFGFVCFSSPEEATKAVTDMNGRIVGTKPLYV 358
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + + D FS FG + + D +SKGYG+V E+ A +++ +NG LL+G+
Sbjct: 100 SIDNKAMYDTFSAFGNILSCKVAQDE-TGQSKGYGFVHFEMEQSATQSIEKVNGMLLNGK 158
Query: 128 VIFV 131
+FV
Sbjct: 159 KVFV 162
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
T+ ML + FS G V + D+ RS GY YV +A++AL MN +L GR +
Sbjct: 14 TEAMLFEKFSTVGAVLSIRVCRDMITRRSLGYAYVNFQNMADAERALDTMNFDILKGRPM 73
Query: 130 FV 131
+
Sbjct: 74 RI 75
>gi|53714011|ref|YP_100003.1| RNA-binding protein [Bacteroides fragilis YCH46]
gi|60682207|ref|YP_212351.1| RNA-binding protein [Bacteroides fragilis NCTC 9343]
gi|265764361|ref|ZP_06092929.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|336410386|ref|ZP_08590866.1| hypothetical protein HMPREF1018_02883 [Bacteroides sp. 2_1_56FAA]
gi|375359004|ref|YP_005111776.1| putative RNA-binding protein [Bacteroides fragilis 638R]
gi|423250510|ref|ZP_17231526.1| hypothetical protein HMPREF1066_02536 [Bacteroides fragilis
CL03T00C08]
gi|423256011|ref|ZP_17236940.1| hypothetical protein HMPREF1067_03584 [Bacteroides fragilis
CL03T12C07]
gi|423271876|ref|ZP_17250846.1| hypothetical protein HMPREF1079_03928 [Bacteroides fragilis
CL05T00C42]
gi|423276340|ref|ZP_17255281.1| hypothetical protein HMPREF1080_03934 [Bacteroides fragilis
CL05T12C13]
gi|423283895|ref|ZP_17262779.1| hypothetical protein HMPREF1204_02317 [Bacteroides fragilis HMW
615]
gi|52216876|dbj|BAD49469.1| putative RNA-binding protein [Bacteroides fragilis YCH46]
gi|60493641|emb|CAH08430.1| putative RNA-binding protein [Bacteroides fragilis NCTC 9343]
gi|263256969|gb|EEZ28315.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|301163685|emb|CBW23239.1| putative RNA-binding protein [Bacteroides fragilis 638R]
gi|335945442|gb|EGN07255.1| hypothetical protein HMPREF1018_02883 [Bacteroides sp. 2_1_56FAA]
gi|392650093|gb|EIY43765.1| hypothetical protein HMPREF1067_03584 [Bacteroides fragilis
CL03T12C07]
gi|392652819|gb|EIY46477.1| hypothetical protein HMPREF1066_02536 [Bacteroides fragilis
CL03T00C08]
gi|392696732|gb|EIY89924.1| hypothetical protein HMPREF1079_03928 [Bacteroides fragilis
CL05T00C42]
gi|392697381|gb|EIY90566.1| hypothetical protein HMPREF1080_03934 [Bacteroides fragilis
CL05T12C13]
gi|404580441|gb|EKA85150.1| hypothetical protein HMPREF1204_02317 [Bacteroides fragilis HMW
615]
Length = 122
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S++ + L + F +FG+V A I+MD RSKG+G+V +EE A+ +N K
Sbjct: 7 GISYNLSNADLGELFEEFGEVISAKIVMDRETGRSKGFGFVEMPNDEEGNAAIAALNEKE 66
Query: 124 LDGRVIFVDNVRP 136
+DG+ + V RP
Sbjct: 67 IDGKTLAVSVARP 79
>gi|410899827|ref|XP_003963398.1| PREDICTED: RNA-binding protein 39-like [Takifugu rubripes]
Length = 500
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T+EML F FG++ ++MD RSKGYG+++ + E A+KAL +NG
Sbjct: 235 SLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFE 294
Query: 124 LDGRVIFVDNV 134
L GR + V +V
Sbjct: 295 LAGRPMKVGHV 305
>gi|423256816|ref|ZP_17237739.1| hypothetical protein HMPREF1055_00016 [Bacteroides fragilis
CL07T00C01]
gi|423266219|ref|ZP_17245222.1| hypothetical protein HMPREF1056_02909 [Bacteroides fragilis
CL07T12C05]
gi|387778292|gb|EIK40387.1| hypothetical protein HMPREF1055_00016 [Bacteroides fragilis
CL07T00C01]
gi|392701574|gb|EIY94732.1| hypothetical protein HMPREF1056_02909 [Bacteroides fragilis
CL07T12C05]
Length = 118
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S++ + L + F +FG+V A I+MD RSKG+G+V +EE A+ +N K
Sbjct: 7 GISYNLSNADLGELFEEFGEVISAKIVMDRETGRSKGFGFVEMPNDEEGNAAIAALNEKE 66
Query: 124 LDGRVIFVDNVRP 136
+DG+ + V RP
Sbjct: 67 IDGKTLAVSVARP 79
>gi|300175323|emb|CBK20634.2| unnamed protein product [Blastocystis hominis]
Length = 385
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++SF+ ++E + + F Q+G++ E TI+ + +S+G+GYV STEE A+ ALV+ NGK+
Sbjct: 259 NLSFAASEEDVQERFQQYGEIVEVTIVRN-NHGKSRGFGYVEFSTEEAAESALVE-NGKM 316
Query: 124 LDGRVIFVDNVRPSRRYNTD 143
L R + V P T+
Sbjct: 317 LKSRKMEVKKSVPQNERKTE 336
>gi|324504792|gb|ADY42066.1| TAR DNA-binding protein 43 [Ascaris suum]
Length = 446
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 62 CISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNG 121
+++ F TTK+ L F +FG+V A I + +SKGYG++ ST EE QK L G
Sbjct: 155 VLNIDFGTTKDSLVKYFEKFGKVEFAEIKTERATGKSKGYGFIKMSTLEEQQKVL--ETG 212
Query: 122 KLLDGRVIFVDNVR-PSRRYNTDASLAR 148
+DGRV+ VR P R + DA AR
Sbjct: 213 HFIDGRVV---EVRIPLRTCDPDAKKAR 237
>gi|261193242|ref|XP_002623027.1| ribosome biogenesis protein Nop4 [Ajellomyces dermatitidis
SLH14081]
gi|239589162|gb|EEQ71805.1| ribosome biogenesis protein Nop4 [Ajellomyces dermatitidis
SLH14081]
gi|327356849|gb|EGE85706.1| ribosome biogenesis protein Nop4 [Ajellomyces dermatitidis ATCC
18188]
Length = 744
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ S T E L + FSQ + AT+++D +SKGYG+VT + E+A KAL + NG +
Sbjct: 55 SLPASATTESLTEYFSQSYPLKHATVVLDPQTKQSKGYGFVTFADHEDAAKALEEFNGSV 114
Query: 124 LDGRVIFVDNVRPSRR 139
DG+ + ++ P R
Sbjct: 115 FDGKKLKIEVAEPRHR 130
Score = 39.7 bits (91), Expect = 0.42, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
+ LA F FG+V A +I G S G+G+V + A+KAL +NGK +DGR + V
Sbjct: 174 DQLAALFRSFGKVKHA-VIPKRGTQHS-GFGFVVLRGRKNAEKALEAVNGKEIDGRTLAV 231
Query: 132 D 132
D
Sbjct: 232 D 232
>gi|293335932|ref|NP_001168160.1| uncharacterized protein LOC100381912 [Zea mays]
gi|223946377|gb|ACN27272.1| unknown [Zea mays]
gi|414872130|tpg|DAA50687.1| TPA: hypothetical protein ZEAMMB73_997132 [Zea mays]
Length = 297
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T + L DAF +FG+V +A I+++ NR +G+G+VT A+ +M+G+
Sbjct: 13 GLSWQTDERKLEDAFGRFGKVVDAQIMVERHTNRHRGFGFVTFEDRRAVDSAIKEMHGQE 72
Query: 124 LDGRVIFVDNVRPSRRYNTD 143
+DGR I V+ P + NTD
Sbjct: 73 IDGRTISVNKAEP--KMNTD 90
>gi|452845910|gb|EME47843.1| hypothetical protein DOTSEDRAFT_167231 [Dothistroma septosporum
NZE10]
Length = 500
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129
E+L AFS FG V+EA ++ D+ RS+GYG+V EA+KAL M+G+ L R I
Sbjct: 189 EVLLQAFSAFGTVSEARVMWDMKTGRSRGYGFVAYRDRGEAEKALSSMDGEWLGSRAI 246
>gi|160888973|ref|ZP_02069976.1| hypothetical protein BACUNI_01393 [Bacteroides uniformis ATCC 8492]
gi|270293903|ref|ZP_06200105.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|423305982|ref|ZP_17283981.1| hypothetical protein HMPREF1072_02921 [Bacteroides uniformis
CL03T00C23]
gi|423309474|ref|ZP_17287464.1| hypothetical protein HMPREF1073_02214 [Bacteroides uniformis
CL03T12C37]
gi|156861440|gb|EDO54871.1| hypothetical protein BACUNI_01393 [Bacteroides uniformis ATCC 8492]
gi|270275370|gb|EFA21230.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|392679826|gb|EIY73203.1| hypothetical protein HMPREF1072_02921 [Bacteroides uniformis
CL03T00C23]
gi|392684514|gb|EIY77839.1| hypothetical protein HMPREF1073_02214 [Bacteroides uniformis
CL03T12C37]
Length = 101
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++FSTT L D FS++G+V+ A II D RS+G+G+V + QKA+ ++NG
Sbjct: 7 GLNFSTTDADLNDLFSEYGEVSSARIITDRETRRSRGFGFVEMPDDAAGQKAIDELNGAE 66
Query: 124 LDGRVIFVDNVRP 136
D + I V+ RP
Sbjct: 67 FDHKQISVNVARP 79
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223541388|gb|EEF42939.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 280
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 4/131 (3%)
Query: 13 QQFNSYFTEDSLLSFSS-KPYQVVNYFSLHCIVRPSSDLIMQLVNVSFWRCISVSFSTTK 71
QQFN Y E L +S P Q + FS L + ++S+S
Sbjct: 151 QQFNGYELEGRALRVNSGPPPQRESSFSRSPRFGGGGGGGESLEGNRLY-VGNLSWSVDN 209
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
L FS+ G+V +A ++ D RS+G+G+VT S+ EE + A+ +NG LDGR I V
Sbjct: 210 LALESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVENAIDSLNGAELDGRAIRV 269
Query: 132 D--NVRPSRRY 140
RP R++
Sbjct: 270 SVAEARPRRQF 280
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+ F+ LA F G V +I D RS+G+G+VT S+ +E + A NG L
Sbjct: 99 LPFNVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQFNGYEL 158
Query: 125 DGRVIFVDNVRPSRRYNTDASLARQP 150
+GR + V++ P +R ++S +R P
Sbjct: 159 EGRALRVNSGPPPQR---ESSFSRSP 181
>gi|432865706|ref|XP_004070573.1| PREDICTED: RNA-binding protein 39-like [Oryzias latipes]
Length = 516
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T+EML F FG++ ++MD RSKGYG+++ + E A+KAL +NG
Sbjct: 252 SLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFE 311
Query: 124 LDGRVIFVDNV 134
L GR + V +V
Sbjct: 312 LAGRPMKVGHV 322
>gi|320103893|ref|YP_004179484.1| RNP-1 like RNA-binding protein [Isosphaera pallida ATCC 43644]
gi|319751175|gb|ADV62935.1| RNP-1 like RNA-binding protein [Isosphaera pallida ATCC 43644]
Length = 104
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ + TT++ L D FS++G+V A I++D NRS+G+G++ T AQ+A+ +NG+
Sbjct: 7 NLPYDTTEDQLIDVFSEYGEVVSAQIMIDRETNRSRGFGFIEMRT--GAQEAIEALNGQD 64
Query: 124 LDGRVIFVDNVRP 136
GR + V+ RP
Sbjct: 65 FHGRSLTVNEARP 77
>gi|46122079|ref|XP_385593.1| hypothetical protein FG05417.1 [Gibberella zeae PH-1]
Length = 473
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 39/65 (60%)
Query: 65 VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124
+S E+L AFS FG V+EA ++ D+ RS+GYG+V EA+KAL M+G+ L
Sbjct: 179 LSNEVNDEVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSSMDGEWL 238
Query: 125 DGRVI 129
R I
Sbjct: 239 GSRAI 243
>gi|406946955|gb|EKD77999.1| glycine-rich RNA-binding protein, partial [uncultured bacterium]
Length = 107
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++TT++ L D FSQ+G + E +I+D RSKG+G++T + ++ + AL NG
Sbjct: 10 NLSYNTTEDGLRDYFSQYGTIEEIKLIIDFNTGRSKGFGFITYGSAQDCENALA-ANGVE 68
Query: 124 LDGRVIFVDNVRP 136
LDGR + V+ R
Sbjct: 69 LDGRKLKVNIARD 81
>gi|47223170|emb|CAG11305.1| unnamed protein product [Tetraodon nigroviridis]
Length = 515
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T+EML F FG++ ++MD RSKGYG+++ + E A+KAL +NG
Sbjct: 250 SLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFE 309
Query: 124 LDGRVIFVDNV 134
L GR + V +V
Sbjct: 310 LAGRPMKVGHV 320
>gi|189500331|ref|YP_001959801.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
gi|189495772|gb|ACE04320.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
Length = 89
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ + ++E L +AF +FG+V+ A II D RSKG+G+V + EA +A+ +N
Sbjct: 7 NLDYGVSEEDLREAFGEFGEVSSANIISDKFTGRSKGFGFVEMPNDAEANQAIDALNDTD 66
Query: 124 LDGRVIFVDNVRP 136
L+GR I V+ RP
Sbjct: 67 LNGRSIKVNQARP 79
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L AFS FG +T A ++M+ G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLWKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L D F +FG ++ D +SKG+G+V+ E+AQKA+ +MNGK L+G+ I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D S FG + ++ D +N SKGYG+V T E A++A+ MNG LL+ R
Sbjct: 109 SINNKALYDTVSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Query: 128 VIFV 131
+FV
Sbjct: 167 KVFV 170
>gi|330847367|gb|AEC46649.1| cold inducible RNA binding protein transcript variant 1 [Sus
scrofa]
Length = 172
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF T ++ L FS++GQ++E ++ D RS+ +G+VT ++A+ A++ MNGK
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRDFGFVTFENIDDAKDAMMAMNGKS 71
Query: 124 LDGRVIFVDNVRPS 137
+DGR I VD S
Sbjct: 72 VDGRQIRVDQAGKS 85
>gi|304376936|gb|ACI70007.2| Cold-inducible RNA-binding protein [Salmo salar]
Length = 82
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+SF TT+E LA+AF+++G + + +I D RS+G+G+V E+A+ AL MNGK
Sbjct: 11 GLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKDALDGMNGKS 70
Query: 124 LDGRVIFV 131
+D +IFV
Sbjct: 71 VD-LMIFV 77
>gi|320162535|ref|YP_004175760.1| RNA-binding domain-containing protein [Anaerolinea thermophila
UNI-1]
gi|319996389|dbj|BAJ65160.1| RNA-binding region [Anaerolinea thermophila UNI-1]
Length = 105
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++ FS ++ L AF+ +G VT A +I D +S+G+G+V + EA+ A+ +NGK
Sbjct: 7 NLPFSANEDDLRSAFAAYGTVTSAAVIKDQFSGQSRGFGFVEMPNQAEAEAAIQGLNGKE 66
Query: 124 LDGRVIFVDNVRP 136
L GR + V+ RP
Sbjct: 67 LKGRALRVNEARP 79
>gi|225457213|ref|XP_002284026.1| PREDICTED: uncharacterized protein LOC100256940 [Vitis vinifera]
Length = 277
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 8/80 (10%)
Query: 61 RCIS--------VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEA 112
RC+S +S+ST L +AF ++G+V EA +I+D RS+G+G+VT ++ EEA
Sbjct: 35 RCMSSSKLFIGGLSYSTDDTSLREAFHKYGEVIEARVIVDRETGRSRGFGFVTFTSSEEA 94
Query: 113 QKALVDMNGKLLDGRVIFVD 132
A+ ++G+ L GR + V+
Sbjct: 95 SSAIQALDGQDLHGRRVRVN 114
>gi|357421081|ref|YP_004928530.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
gi|354803591|gb|AER40705.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
Length = 89
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMD--IGKNRSKGYGYVTSSTEEEAQKALVDMNG 121
++S+ T++ L + F G+VT A II D RSKG+G++ S EE A+KA+ +NG
Sbjct: 10 NLSYEMTEQELKEHFESIGEVTHAKIIFDESTSNKRSKGFGFIEMSNEENAKKAIEKLNG 69
Query: 122 KLLDGRVIFVDNVRP 136
GR I V RP
Sbjct: 70 TEFMGRNIIVSVARP 84
>gi|348503003|ref|XP_003439056.1| PREDICTED: RNA-binding protein 39-like [Oreochromis niloticus]
Length = 498
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ F+ T+EML F FG++ ++MD RSKGYG+++ + E A+KAL +NG
Sbjct: 233 SLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFE 292
Query: 124 LDGRVIFVDNV 134
L GR + V +V
Sbjct: 293 LAGRPMKVGHV 303
>gi|406964974|gb|EKD90666.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 118
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+ FS T E L + F ++G V+ A IIMD N+SKG+ +V + EAQ A+ +++G
Sbjct: 8 GIPFSLTNEKLKELFEKYGTVSSAQIIMDKYTNQSKGFAFVEMPNDTEAQTAIKELDGFG 67
Query: 124 LDGRVIFVDNVRP 136
L+GR I V RP
Sbjct: 68 LEGRKIGVSVARP 80
>gi|392592864|gb|EIW82190.1| RNA-binding domain-containing protein, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 306
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 63 ISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGK 122
+S T + L D FS+FG+V + TI+ D +RS+G+G++ S EEA + + ++NG
Sbjct: 89 FGLSIRTQERDLDDEFSRFGRVEKVTIVYDQRSDRSRGFGFIKMSAVEEATRCIQELNGV 148
Query: 123 LLDGRVIFVD 132
L+GR I VD
Sbjct: 149 ELNGRRIRVD 158
>gi|226293059|gb|EEH48479.1| nucleolar protein [Paracoccidioides brasiliensis Pb18]
Length = 691
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ S T E L D FSQ + AT+++D +SKGYG+VT + E+ +AL + NG +
Sbjct: 54 SLPLSATTESLTDYFSQSYPLKHATVVLDPQTKQSKGYGFVTFADSEDVARALEEFNGSV 113
Query: 124 LDGRVIFVDNVRPSRR 139
DG+ + ++ P R
Sbjct: 114 FDGKKLKIEVAEPRHR 129
Score = 39.7 bits (91), Expect = 0.45, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L F FG+V A I N+ G+G+V + A+KAL +NGK +DGR + V
Sbjct: 173 EQLEVLFRSFGKVKYAVIPKK--GNKHSGFGFVVLRGRKNAEKALEAVNGKEVDGRTLAV 230
Query: 132 D 132
D
Sbjct: 231 D 231
>gi|225683698|gb|EEH21982.1| nucleolar protein [Paracoccidioides brasiliensis Pb03]
Length = 730
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+ S T E L D FSQ + AT+++D +SKGYG+VT + E+ +AL + NG +
Sbjct: 54 SLPLSATTESLTDYFSQSYPLKHATVVLDPQTKQSKGYGFVTFADSEDVARALEEFNGSV 113
Query: 124 LDGRVIFVDNVRPSRR 139
DG+ + ++ P R
Sbjct: 114 FDGKKLKIEVAEPRHR 129
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L F FG+V A I N+ G+G+V + A+KAL +NGK +DGR + V
Sbjct: 173 EQLEVLFRSFGKVKHAVIPKK--GNKHSGFGFVVLRGRKNAEKALEAVNGKEVDGRTLAV 230
Query: 132 D 132
D
Sbjct: 231 D 231
>gi|133246|sp|P19682.1|ROC3_NICSY RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP;
Flags: Precursor
gi|100388|pir||S12109 ribonucleoprotein, 28K, precursor - common tobacco
gi|19750|emb|CAA37880.1| unnamed protein product [Nicotiana sylvestris]
Length = 276
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L FS+ G+V A ++ D RS+G+G+VT S+E E +A+ +++G+ LDGR I V+
Sbjct: 207 LEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNA 266
Query: 134 VRPSRRYNT 142
R NT
Sbjct: 267 AEERPRRNT 275
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKAL-----VD 118
++ + E LA F Q G V A +I + +RS+G+G+VT ST EEA KA+ D
Sbjct: 103 NLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYD 162
Query: 119 MNGKLLDGRVIFVDNVRPSR 138
+NG+LL RP R
Sbjct: 163 LNGRLLTVNKAAPRGSRPER 182
>gi|341893520|gb|EGT49455.1| CBN-TIAR-2 protein [Caenorhabditis brenneri]
Length = 420
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 63 ISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGK 122
+S +TK L +AF FG+V+EA II D N++KGYG+V+ E+A++A+ MNG+
Sbjct: 139 LSSEIDSTK--LKEAFLPFGEVSEAKIIRDTTTNKAKGYGFVSYPRREDAERAIEQMNGQ 196
Query: 123 LLDGRVI 129
L R I
Sbjct: 197 WLGRRTI 203
>gi|212212428|ref|YP_002303364.1| glycine-rich RNA-binding protein [Coxiella burnetii CbuG_Q212]
gi|212010838|gb|ACJ18219.1| glycine-rich RNA-binding protein [Coxiella burnetii CbuG_Q212]
Length = 121
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+S+ T + L F Q+G++ EA +IMD RSKG+ ++T T++ AQ+A+ NG
Sbjct: 24 SLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGID 83
Query: 124 LDGRVIFVDNVRPS 137
L GR I V+ R +
Sbjct: 84 LQGRKIRVNIAREN 97
>gi|212218608|ref|YP_002305395.1| glycine-rich RNA-binding protein [Coxiella burnetii CbuK_Q154]
gi|215919123|ref|NP_820178.2| nucleic acid binding domain-containing protein [Coxiella burnetii
RSA 493]
gi|206584008|gb|AAO90692.2| glycine-rich RNA-binding protein [Coxiella burnetii RSA 493]
gi|212012870|gb|ACJ20250.1| glycine-rich RNA-binding protein [Coxiella burnetii CbuK_Q154]
Length = 117
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
S+S+ T + L F Q+G++ EA +IMD RSKG+ ++T T++ AQ+A+ NG
Sbjct: 24 SLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGID 83
Query: 124 LDGRVIFVDNVRPS 137
L GR I V+ R +
Sbjct: 84 LQGRKIRVNIAREN 97
>gi|157163899|ref|YP_001467322.1| HIT family protein [Campylobacter concisus 13826]
gi|416114611|ref|ZP_11593777.1| RNA-binding protein [Campylobacter concisus UNSWCD]
gi|384578134|gb|EIF07405.1| RNA-binding protein [Campylobacter concisus UNSWCD]
Length = 65
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
+ +AF+QFG+V A I+ D +RSKG+G+V E QKA+ +N K L GR + V+
Sbjct: 1 MKEAFAQFGEVRRAKIVKDRETDRSKGFGFVEMDDANEGQKAIDALNEKELGGRTLRVNE 60
Query: 134 VRP 136
RP
Sbjct: 61 ARP 63
>gi|444726222|gb|ELW66761.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 568
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133
L D FSQFG++ ++ D S+G+G+V EEAQKA+V MNGK + GR+++V
Sbjct: 182 LQDLFSQFGKMLSVKVMRD-SSGHSRGFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYVG- 239
Query: 134 VRPSRRYNTDASLARQ 149
R +R L R+
Sbjct: 240 -RAQKRLERQNELKRR 254
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D FS FG + ++ D ++ S+G+G+V T + AQ+A+ MNG LL+ R
Sbjct: 84 SIDNKALYDTFSTFGNILSCKVVCD--EHGSRGFGFVHFETHDAAQRAISTMNGMLLNDR 141
Query: 128 VIFVDNVRPSRR 139
+FV + + SRR
Sbjct: 142 KVFVGHFK-SRR 152
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S E L FS +G +T A ++ + G SKG+G+V S+ EEA KA+ +MNG+++ +
Sbjct: 279 SINDEKLRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 336
Query: 128 VIFV 131
++V
Sbjct: 337 PLYV 340
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L AFS FG +T A ++M+ G RSKG+G+V S+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLWKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131
E L D F +FG ++ D +SKG+G+V+ E+AQKA+ +MNGK L+G+ I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR 127
S + L D S FG + ++ D +N SKGYG+V T E A++A+ MNG LL+ R
Sbjct: 109 SINNKALYDTVSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Query: 128 VIFV 131
+FV
Sbjct: 167 KVFV 170
>gi|423302507|ref|ZP_17280529.1| hypothetical protein HMPREF1057_03670 [Bacteroides finegoldii
CL09T03C10]
gi|408470383|gb|EKJ88917.1| hypothetical protein HMPREF1057_03670 [Bacteroides finegoldii
CL09T03C10]
Length = 99
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+S+ T L + F++FG+V+ A +IMD +S+G+ +V +++EE QKA+ ++NG
Sbjct: 7 GLSYRTNDADLTNLFAEFGEVSSAKVIMDRETGKSRGFAFVEMTSDEEGQKAIDELNGVE 66
Query: 124 LDGRVIFVDNVRP 136
D +VI V RP
Sbjct: 67 YDQKVISVSVARP 79
>gi|406994267|gb|EKE13283.1| hypothetical protein ACD_13C00045G0007 [uncultured bacterium]
Length = 134
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
+ FSTT++ L FS+ G V AT+IMD +SKG+G+V T EEA KA+ +N
Sbjct: 9 GLPFSTTQDELKTLFSESGTVVSATVIMDKMTGQSKGFGFVEMETTEEAAKAISSLNETE 68
Query: 124 LDGRVIFVDNVRP--SRRYNTD 143
GR + V +P RR D
Sbjct: 69 FGGRTLIVAEAKPMEERRDRAD 90
>gi|313203177|ref|YP_004041834.1| rnp-1 like RNA-binding protein [Paludibacter propionicigenes WB4]
gi|312442493|gb|ADQ78849.1| RNP-1 like RNA-binding protein [Paludibacter propionicigenes WB4]
Length = 81
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 64 SVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123
++S++ + L +A +++GQV +IMD RSKG+ +V S EE A+K + ++NG
Sbjct: 7 NLSYNVRENDLQEAIAEYGQVDSCKLIMDRETRRSKGFAFVEMSDEEAAKKVIAELNGAE 66
Query: 124 LDGRVIFVDNVRPSR 138
DGR + V P +
Sbjct: 67 FDGRAMVVKEALPKK 81
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.129 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,163,912,781
Number of Sequences: 23463169
Number of extensions: 76715476
Number of successful extensions: 252806
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 13356
Number of HSP's successfully gapped in prelim test: 3784
Number of HSP's that attempted gapping in prelim test: 225859
Number of HSP's gapped (non-prelim): 28823
length of query: 157
length of database: 8,064,228,071
effective HSP length: 119
effective length of query: 38
effective length of database: 9,567,078,256
effective search space: 363548973728
effective search space used: 363548973728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)