Query 036791
Match_columns 157
No_of_seqs 146 out of 1673
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:32:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 2.7E-21 5.9E-26 132.8 13.5 84 56-139 33-116 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 3.6E-19 7.9E-24 138.4 11.6 82 58-139 270-351 (352)
3 TIGR01659 sex-lethal sex-letha 99.8 2.2E-18 4.7E-23 133.5 14.6 82 56-137 192-275 (346)
4 TIGR01645 half-pint poly-U bin 99.8 1.8E-18 3.9E-23 141.2 14.3 122 9-138 163-285 (612)
5 KOG0121 Nuclear cap-binding pr 99.8 9E-19 2E-23 114.8 7.6 86 51-136 30-115 (153)
6 KOG0148 Apoptosis-promoting RN 99.8 3.2E-18 7E-23 124.9 11.2 126 5-138 114-239 (321)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.2E-18 4.7E-23 134.0 11.1 83 57-139 3-85 (352)
8 TIGR01659 sex-lethal sex-letha 99.8 4.1E-18 9E-23 132.0 10.8 84 55-138 105-188 (346)
9 PF00076 RRM_1: RNA recognitio 99.8 1.1E-17 2.3E-22 100.8 9.7 70 60-130 1-70 (70)
10 KOG0122 Translation initiation 99.8 1.4E-17 3.1E-22 120.0 11.0 82 56-137 188-269 (270)
11 KOG0149 Predicted RNA-binding 99.7 2.2E-17 4.7E-22 118.5 7.4 81 55-136 10-90 (247)
12 KOG0113 U1 small nuclear ribon 99.7 1.3E-16 2.9E-21 117.8 10.1 92 45-136 89-180 (335)
13 TIGR01628 PABP-1234 polyadenyl 99.7 9E-17 2E-21 132.1 10.1 82 56-138 284-365 (562)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.7 5.8E-16 1.3E-20 125.8 13.9 81 57-137 295-375 (509)
15 PF14259 RRM_6: RNA recognitio 99.7 5E-16 1.1E-20 93.9 9.5 70 60-130 1-70 (70)
16 TIGR01645 half-pint poly-U bin 99.7 2E-16 4.4E-21 129.2 10.1 80 56-135 106-185 (612)
17 TIGR01622 SF-CC1 splicing fact 99.7 9.6E-16 2.1E-20 123.1 13.2 79 57-135 186-264 (457)
18 KOG0107 Alternative splicing f 99.7 4E-16 8.6E-21 107.5 9.2 79 56-139 9-87 (195)
19 KOG0111 Cyclophilin-type pepti 99.7 5.4E-17 1.2E-21 115.6 5.0 86 56-141 9-94 (298)
20 PLN03120 nucleic acid binding 99.7 1.3E-15 2.8E-20 112.3 12.2 76 57-136 4-79 (260)
21 KOG0144 RNA-binding protein CU 99.7 1.1E-16 2.4E-21 123.4 6.6 123 19-142 65-211 (510)
22 TIGR01648 hnRNP-R-Q heterogene 99.7 9.2E-16 2E-20 125.1 12.1 118 4-135 18-136 (578)
23 TIGR01628 PABP-1234 polyadenyl 99.7 7.3E-16 1.6E-20 126.8 11.4 79 59-137 2-80 (562)
24 KOG4207 Predicted splicing fac 99.7 1.7E-16 3.6E-21 112.1 6.2 80 56-135 12-91 (256)
25 KOG0125 Ataxin 2-binding prote 99.7 5.7E-16 1.2E-20 115.9 8.5 80 56-137 95-174 (376)
26 PLN03213 repressor of silencin 99.6 7.4E-16 1.6E-20 120.9 9.3 77 57-137 10-88 (759)
27 KOG0148 Apoptosis-promoting RN 99.6 9.1E-16 2E-20 112.2 8.7 82 57-138 62-143 (321)
28 KOG0130 RNA-binding protein RB 99.6 9.4E-16 2E-20 101.6 8.0 84 54-137 69-152 (170)
29 KOG0145 RNA-binding protein EL 99.6 1.7E-15 3.7E-20 110.4 6.8 116 18-137 71-209 (360)
30 KOG0117 Heterogeneous nuclear 99.6 5.7E-15 1.2E-19 114.4 10.0 82 55-136 81-163 (506)
31 TIGR01622 SF-CC1 splicing fact 99.6 1.1E-14 2.5E-19 116.9 12.2 81 56-137 88-168 (457)
32 KOG0131 Splicing factor 3b, su 99.6 1.8E-15 3.9E-20 104.9 6.2 80 56-135 8-87 (203)
33 KOG0131 Splicing factor 3b, su 99.6 8.6E-16 1.9E-20 106.5 4.4 87 55-141 94-181 (203)
34 KOG0145 RNA-binding protein EL 99.6 9.1E-15 2E-19 106.7 9.8 85 56-140 40-124 (360)
35 KOG0144 RNA-binding protein CU 99.6 3.3E-15 7.1E-20 115.3 7.9 86 55-140 32-120 (510)
36 KOG0126 Predicted RNA-binding 99.6 1.3E-16 2.9E-21 110.5 0.1 80 56-135 34-113 (219)
37 smart00362 RRM_2 RNA recogniti 99.6 1.5E-14 3.2E-19 86.5 9.1 72 59-132 1-72 (72)
38 COG0724 RNA-binding proteins ( 99.6 1.8E-14 4E-19 106.7 10.0 80 57-136 115-194 (306)
39 PLN03121 nucleic acid binding 99.6 2.6E-14 5.6E-19 104.0 10.4 76 56-135 4-79 (243)
40 KOG0114 Predicted RNA-binding 99.6 2.5E-14 5.5E-19 90.7 8.9 78 57-137 18-95 (124)
41 smart00360 RRM RNA recognition 99.6 2.5E-14 5.4E-19 85.2 8.6 71 62-132 1-71 (71)
42 KOG0117 Heterogeneous nuclear 99.6 1.6E-14 3.4E-19 112.0 8.6 77 55-139 257-333 (506)
43 KOG0108 mRNA cleavage and poly 99.6 1.3E-14 2.8E-19 114.6 8.1 82 58-139 19-100 (435)
44 KOG0105 Alternative splicing f 99.5 4E-14 8.7E-19 98.6 8.4 80 55-137 4-83 (241)
45 TIGR01648 hnRNP-R-Q heterogene 99.5 1.1E-13 2.3E-18 113.1 11.9 75 57-139 233-309 (578)
46 cd00590 RRM RRM (RNA recogniti 99.5 2.1E-13 4.5E-18 81.9 10.0 74 59-133 1-74 (74)
47 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 1.6E-13 3.4E-18 111.2 10.9 77 56-137 274-351 (481)
48 KOG0127 Nucleolar protein fibr 99.5 2.2E-13 4.7E-18 108.1 11.0 85 57-142 117-201 (678)
49 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 6.7E-13 1.4E-17 107.5 13.9 77 56-136 95-173 (481)
50 smart00361 RRM_1 RNA recogniti 99.4 6.6E-13 1.4E-17 80.3 7.9 61 71-131 2-69 (70)
51 KOG0124 Polypyrimidine tract-b 99.4 8.9E-14 1.9E-18 105.8 4.7 75 58-132 114-188 (544)
52 PF13893 RRM_5: RNA recognitio 99.4 1E-12 2.2E-17 76.0 8.1 56 74-134 1-56 (56)
53 KOG0124 Polypyrimidine tract-b 99.4 4.8E-13 1E-17 101.9 7.4 120 10-136 170-289 (544)
54 KOG0123 Polyadenylate-binding 99.4 2.6E-12 5.5E-17 100.5 11.0 79 60-141 79-157 (369)
55 KOG0109 RNA-binding protein LA 99.4 5.3E-13 1.1E-17 98.8 6.7 82 54-143 75-156 (346)
56 KOG0127 Nucleolar protein fibr 99.4 1.6E-12 3.4E-17 103.3 8.3 80 58-137 293-378 (678)
57 KOG0146 RNA-binding protein ET 99.4 9.8E-13 2.1E-17 96.5 6.0 85 55-139 283-367 (371)
58 KOG0147 Transcriptional coacti 99.3 1.5E-12 3.3E-17 103.2 6.2 77 60-136 281-357 (549)
59 KOG4206 Spliceosomal protein s 99.3 5E-12 1.1E-16 90.6 8.1 80 57-139 9-92 (221)
60 KOG0146 RNA-binding protein ET 99.3 2.4E-12 5.2E-17 94.5 6.0 89 52-141 14-105 (371)
61 KOG4212 RNA-binding protein hn 99.3 6.8E-12 1.5E-16 97.5 8.4 79 57-136 44-123 (608)
62 KOG0109 RNA-binding protein LA 99.3 3.5E-12 7.5E-17 94.5 5.9 71 59-137 4-74 (346)
63 TIGR01642 U2AF_lg U2 snRNP aux 99.3 5.3E-11 1.1E-15 96.9 11.7 129 8-136 350-501 (509)
64 KOG0110 RNA-binding protein (R 99.3 1E-11 2.2E-16 101.2 6.7 81 57-137 613-693 (725)
65 KOG4208 Nucleolar RNA-binding 99.3 2.6E-11 5.7E-16 85.8 7.9 82 56-137 48-130 (214)
66 KOG1457 RNA binding protein (c 99.2 1.9E-10 4.1E-15 82.6 11.6 89 55-143 32-124 (284)
67 KOG0153 Predicted RNA-binding 99.2 4.3E-11 9.4E-16 90.5 8.7 80 51-136 222-302 (377)
68 KOG0415 Predicted peptidyl pro 99.2 1.8E-11 3.8E-16 93.0 6.3 80 57-136 239-318 (479)
69 KOG4205 RNA-binding protein mu 99.2 1.1E-10 2.4E-15 88.9 8.2 84 57-141 97-180 (311)
70 KOG0132 RNA polymerase II C-te 99.1 1.5E-10 3.3E-15 95.2 7.9 77 58-140 422-498 (894)
71 KOG4212 RNA-binding protein hn 99.1 1.6E-10 3.5E-15 90.0 6.9 75 55-134 534-608 (608)
72 KOG4205 RNA-binding protein mu 99.1 8.3E-11 1.8E-15 89.6 5.0 86 56-142 5-90 (311)
73 KOG0226 RNA-binding proteins [ 99.1 1.6E-10 3.5E-15 84.2 6.1 83 55-137 188-270 (290)
74 KOG0123 Polyadenylate-binding 99.1 3.9E-10 8.4E-15 88.3 8.5 74 59-138 3-76 (369)
75 KOG4661 Hsp27-ERE-TATA-binding 99.1 4.5E-10 9.8E-15 90.1 8.3 80 57-136 405-484 (940)
76 KOG0116 RasGAP SH3 binding pro 99.1 6.6E-10 1.4E-14 87.7 9.0 80 58-138 289-368 (419)
77 KOG0533 RRM motif-containing p 99.1 8.5E-10 1.8E-14 81.2 8.7 80 57-137 83-162 (243)
78 KOG0110 RNA-binding protein (R 99.0 1.3E-09 2.8E-14 89.1 8.6 77 59-135 517-596 (725)
79 KOG0151 Predicted splicing reg 99.0 3.7E-09 7.9E-14 86.6 10.8 82 55-136 172-256 (877)
80 KOG4209 Splicing factor RNPS1, 99.0 1.5E-09 3.3E-14 79.8 7.2 84 53-137 97-180 (231)
81 KOG0106 Alternative splicing f 98.9 1.7E-09 3.8E-14 78.1 5.7 71 59-137 3-73 (216)
82 PF04059 RRM_2: RNA recognitio 98.9 2.2E-08 4.7E-13 63.9 9.4 79 58-136 2-86 (97)
83 KOG1548 Transcription elongati 98.9 1E-08 2.3E-13 77.8 8.7 81 55-136 132-220 (382)
84 KOG4660 Protein Mei2, essentia 98.8 6E-09 1.3E-13 83.3 4.5 72 54-130 72-143 (549)
85 KOG0120 Splicing factor U2AF, 98.7 2.8E-08 6.1E-13 79.7 6.0 84 56-139 288-371 (500)
86 KOG4454 RNA binding protein (R 98.6 1.2E-08 2.7E-13 73.1 2.0 78 57-136 9-86 (267)
87 PF11608 Limkain-b1: Limkain b 98.5 9.3E-07 2E-11 54.4 8.0 71 58-138 3-78 (90)
88 KOG4211 Splicing factor hnRNP- 98.4 1.3E-06 2.8E-11 69.3 8.4 78 57-138 10-87 (510)
89 KOG1995 Conserved Zn-finger pr 98.4 7.2E-07 1.6E-11 68.3 6.4 85 54-138 63-155 (351)
90 KOG0147 Transcriptional coacti 98.3 2.5E-07 5.4E-12 74.1 2.2 80 56-136 178-257 (549)
91 KOG1190 Polypyrimidine tract-b 98.3 4.8E-06 1E-10 64.9 8.5 74 58-136 298-372 (492)
92 KOG4210 Nuclear localization s 98.3 7E-07 1.5E-11 67.8 3.5 83 58-141 185-268 (285)
93 KOG4206 Spliceosomal protein s 98.3 1.5E-05 3.2E-10 57.6 9.7 76 55-135 144-220 (221)
94 KOG1457 RNA binding protein (c 98.2 1.2E-06 2.7E-11 63.2 4.0 64 57-124 210-273 (284)
95 KOG4849 mRNA cleavage factor I 98.1 1.8E-06 3.8E-11 66.1 3.3 74 58-131 81-156 (498)
96 KOG4211 Splicing factor hnRNP- 98.1 7.3E-06 1.6E-10 65.2 6.4 78 56-135 102-180 (510)
97 COG5175 MOT2 Transcriptional r 98.1 1.4E-05 3.1E-10 61.1 6.5 78 59-136 116-202 (480)
98 PF08777 RRM_3: RNA binding mo 98.0 2E-05 4.3E-10 51.2 5.4 69 59-133 3-76 (105)
99 KOG0106 Alternative splicing f 97.9 1.7E-05 3.8E-10 57.5 4.1 72 57-136 99-170 (216)
100 KOG1548 Transcription elongati 97.8 0.00015 3.3E-09 55.6 8.6 125 11-139 199-354 (382)
101 KOG1456 Heterogeneous nuclear 97.8 0.00015 3.3E-09 56.2 8.7 97 33-137 99-199 (494)
102 KOG3152 TBP-binding protein, a 97.8 2.6E-05 5.6E-10 57.5 4.0 73 56-128 73-157 (278)
103 KOG2314 Translation initiation 97.7 0.00011 2.3E-09 59.7 6.2 76 58-134 59-141 (698)
104 KOG0120 Splicing factor U2AF, 97.7 0.00019 4.2E-09 58.1 7.2 66 72-137 424-492 (500)
105 KOG4307 RNA binding protein RB 97.6 0.00027 5.9E-09 58.8 7.5 75 58-133 868-943 (944)
106 KOG0105 Alternative splicing f 97.5 0.0018 3.9E-08 45.9 9.9 63 56-125 114-176 (241)
107 KOG0129 Predicted RNA-binding 97.5 0.0004 8.6E-09 55.9 6.8 64 55-118 368-432 (520)
108 KOG1190 Polypyrimidine tract-b 97.5 0.00028 6.1E-09 55.3 5.6 74 58-135 151-224 (492)
109 KOG0112 Large RNA-binding prot 97.4 0.00035 7.6E-09 59.5 6.1 80 55-140 453-534 (975)
110 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00051 1.1E-08 38.9 5.0 51 59-116 3-53 (53)
111 KOG0128 RNA-binding protein SA 97.4 0.00013 2.8E-09 61.6 3.4 79 57-136 736-814 (881)
112 PF08952 DUF1866: Domain of un 97.4 0.0012 2.6E-08 45.1 7.2 59 73-140 52-110 (146)
113 PF08675 RNA_bind: RNA binding 97.2 0.0029 6.2E-08 39.1 6.5 54 59-121 11-64 (87)
114 KOG2193 IGF-II mRNA-binding pr 97.1 0.00035 7.6E-09 55.1 2.6 77 59-142 3-81 (584)
115 KOG1456 Heterogeneous nuclear 97.1 0.0055 1.2E-07 47.9 8.6 75 57-136 287-362 (494)
116 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0043 9.4E-08 39.9 6.9 76 58-135 7-90 (100)
117 KOG0129 Predicted RNA-binding 97.0 0.0037 8E-08 50.5 7.7 61 58-119 260-326 (520)
118 KOG1855 Predicted RNA-binding 97.0 0.0014 3E-08 51.8 4.9 68 55-122 229-309 (484)
119 KOG1365 RNA-binding protein Fu 96.9 0.0018 3.9E-08 50.6 4.9 77 58-135 281-360 (508)
120 PF10309 DUF2414: Protein of u 96.9 0.0097 2.1E-07 34.7 6.6 53 59-119 7-62 (62)
121 KOG1996 mRNA splicing factor [ 96.8 0.0052 1.1E-07 46.5 6.7 65 71-135 300-365 (378)
122 KOG0115 RNA-binding protein p5 96.7 0.0025 5.4E-08 47.2 4.1 62 58-120 32-93 (275)
123 KOG2202 U2 snRNP splicing fact 96.7 0.00097 2.1E-08 49.3 1.9 62 73-135 84-146 (260)
124 KOG1365 RNA-binding protein Fu 96.6 0.0026 5.7E-08 49.7 3.9 75 57-133 161-239 (508)
125 KOG0128 RNA-binding protein SA 96.6 0.00011 2.4E-09 62.0 -3.8 76 58-133 668-743 (881)
126 KOG2416 Acinus (induces apopto 96.6 0.0022 4.8E-08 52.6 3.5 74 56-135 443-520 (718)
127 KOG0112 Large RNA-binding prot 96.4 0.0011 2.5E-08 56.5 0.6 79 57-136 372-450 (975)
128 KOG4307 RNA binding protein RB 96.0 0.0043 9.4E-08 51.9 2.3 76 58-134 435-511 (944)
129 KOG2068 MOT2 transcription fac 95.9 0.0032 7E-08 48.3 1.1 80 58-137 78-163 (327)
130 KOG4676 Splicing factor, argin 95.9 0.013 2.8E-07 46.1 4.3 77 59-135 9-88 (479)
131 PF15023 DUF4523: Protein of u 95.4 0.11 2.5E-06 35.4 6.9 72 56-135 85-160 (166)
132 PF04847 Calcipressin: Calcipr 95.3 0.054 1.2E-06 38.7 5.4 61 71-137 9-71 (184)
133 PF07576 BRAP2: BRCA1-associat 95.1 0.55 1.2E-05 30.7 9.2 75 58-134 13-92 (110)
134 KOG4660 Protein Mei2, essentia 94.8 0.07 1.5E-06 43.7 5.3 78 59-136 390-472 (549)
135 KOG2135 Proteins containing th 94.8 0.019 4E-07 46.2 2.1 72 60-138 375-447 (526)
136 PF03467 Smg4_UPF3: Smg-4/UPF3 94.5 0.063 1.4E-06 38.1 4.1 79 57-135 7-96 (176)
137 PF03880 DbpA: DbpA RNA bindin 94.1 0.56 1.2E-05 28.2 7.1 60 66-134 10-74 (74)
138 KOG2253 U1 snRNP complex, subu 93.8 0.052 1.1E-06 45.3 2.7 79 46-133 29-107 (668)
139 KOG4285 Mitotic phosphoprotein 93.2 0.38 8.3E-06 36.8 6.3 66 60-133 200-266 (350)
140 PF11767 SET_assoc: Histone ly 92.8 0.93 2E-05 26.8 6.3 55 68-131 11-65 (66)
141 KOG4210 Nuclear localization s 91.9 0.087 1.9E-06 40.3 1.5 80 56-135 87-166 (285)
142 KOG2591 c-Mpl binding protein, 91.8 0.42 9.1E-06 39.5 5.2 66 58-130 176-245 (684)
143 KOG4574 RNA-binding protein (c 91.4 0.21 4.5E-06 43.2 3.2 77 59-141 300-378 (1007)
144 KOG4454 RNA binding protein (R 91.1 0.097 2.1E-06 38.3 1.0 74 58-132 81-158 (267)
145 COG0724 RNA-binding proteins ( 86.8 2 4.2E-05 31.2 5.4 105 8-112 170-280 (306)
146 KOG0804 Cytoplasmic Zn-finger 86.5 5.4 0.00012 32.4 7.7 68 57-126 74-142 (493)
147 KOG4410 5-formyltetrahydrofola 86.5 3.1 6.7E-05 31.8 6.1 46 58-109 331-377 (396)
148 PF07530 PRE_C2HC: Associated 79.8 5.6 0.00012 23.6 4.3 64 72-138 2-66 (68)
149 KOG2193 IGF-II mRNA-binding pr 77.7 0.075 1.6E-06 42.4 -5.4 73 58-134 81-154 (584)
150 KOG4019 Calcineurin-mediated s 75.4 6.8 0.00015 27.9 4.3 73 60-138 13-91 (193)
151 smart00596 PRE_C2HC PRE_C2HC d 75.2 7.3 0.00016 23.2 3.8 63 72-137 2-65 (69)
152 KOG4676 Splicing factor, argin 72.3 0.78 1.7E-05 36.4 -1.0 63 58-125 152-214 (479)
153 KOG2318 Uncharacterized conser 72.2 22 0.00049 30.0 7.1 77 56-133 173-302 (650)
154 PF15513 DUF4651: Domain of un 70.1 15 0.00032 21.4 4.2 20 72-91 9-28 (62)
155 KOG4483 Uncharacterized conser 64.0 19 0.00041 29.1 5.0 54 58-118 392-446 (528)
156 PF03468 XS: XS domain; Inter 56.9 45 0.00099 21.9 5.3 45 70-117 30-75 (116)
157 PF02714 DUF221: Domain of unk 54.4 19 0.00042 27.6 3.7 35 102-138 1-35 (325)
158 PF09707 Cas_Cas2CT1978: CRISP 51.3 39 0.00084 21.0 4.0 46 58-106 26-71 (86)
159 PF10567 Nab6_mRNP_bdg: RNA-re 47.7 41 0.0009 26.0 4.4 78 58-135 16-106 (309)
160 PRK11558 putative ssRNA endonu 41.6 48 0.001 21.2 3.4 48 58-108 28-75 (97)
161 KOG2295 C2H2 Zn-finger protein 39.4 4.4 9.5E-05 33.8 -2.0 68 58-125 232-299 (648)
162 PF13046 DUF3906: Protein of u 38.9 47 0.001 19.4 2.8 33 70-104 31-63 (64)
163 KOG4365 Uncharacterized conser 38.3 6.2 0.00013 32.1 -1.3 76 60-136 6-81 (572)
164 KOG2187 tRNA uracil-5-methyltr 36.2 33 0.00071 28.7 2.5 41 98-138 62-102 (534)
165 KOG0156 Cytochrome P450 CYP2 s 35.4 95 0.0021 25.8 5.1 58 62-129 37-97 (489)
166 PRK11901 hypothetical protein; 34.5 1.1E+02 0.0025 24.0 5.0 62 58-123 246-308 (327)
167 PF15063 TC1: Thyroid cancer p 31.7 31 0.00068 20.9 1.3 26 60-85 28-53 (79)
168 KOG2891 Surface glycoprotein [ 31.1 52 0.0011 25.3 2.7 67 58-124 150-247 (445)
169 PRK10905 cell division protein 30.3 1.5E+02 0.0031 23.4 5.0 61 58-122 248-309 (328)
170 TIGR01873 cas_CT1978 CRISPR-as 28.6 1.1E+02 0.0025 19.0 3.5 47 58-107 26-73 (87)
171 COG0030 KsgA Dimethyladenosine 26.9 85 0.0018 23.8 3.2 33 59-91 97-129 (259)
172 PF03439 Spt5-NGN: Early trans 26.7 86 0.0019 19.1 2.7 26 97-122 42-67 (84)
173 PF11823 DUF3343: Protein of u 25.9 1.1E+02 0.0024 17.9 3.1 24 101-124 3-26 (73)
174 KOG4008 rRNA processing protei 25.5 69 0.0015 24.0 2.4 29 56-84 39-67 (261)
175 PF11411 DNA_ligase_IV: DNA li 24.7 68 0.0015 16.5 1.6 16 67-82 19-34 (36)
176 PF07292 NID: Nmi/IFP 35 domai 20.5 55 0.0012 20.5 1.0 22 56-77 51-72 (88)
177 PF04026 SpoVG: SpoVG; InterP 20.1 2.3E+02 0.0049 17.5 4.1 25 84-108 3-27 (84)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.87 E-value=2.7e-21 Score=132.77 Aligned_cols=84 Identities=33% Similarity=0.512 Sum_probs=79.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..++|||+|||+.+++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|++|++.|++..|+|+.|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCC
Q 036791 136 PSRR 139 (157)
Q Consensus 136 ~~~~ 139 (157)
++..
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 6654
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.81 E-value=3.6e-19 Score=138.36 Aligned_cols=82 Identities=30% Similarity=0.435 Sum_probs=78.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCC
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPS 137 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~ 137 (157)
.+|||+|||+.+++++|+++|++||.|..++++.++.++.++|||||.|.+.++|.+|+..|||..|+|+.|+|.|..++
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 036791 138 RR 139 (157)
Q Consensus 138 ~~ 139 (157)
..
T Consensus 350 ~~ 351 (352)
T TIGR01661 350 AY 351 (352)
T ss_pred CC
Confidence 64
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.80 E-value=2.2e-18 Score=133.55 Aligned_cols=82 Identities=21% Similarity=0.335 Sum_probs=76.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC--cEEEEEe
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG--RVIFVDN 133 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g--~~l~v~~ 133 (157)
..++|||+|||+.+++++|+++|++||.|..+.|+.++.+++.+|||||+|.+.++|++||+.||+..+.+ ++|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 34679999999999999999999999999999999999899999999999999999999999999999866 7899999
Q ss_pred ecCC
Q 036791 134 VRPS 137 (157)
Q Consensus 134 ~~~~ 137 (157)
+...
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 8753
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.80 E-value=1.8e-18 Score=141.16 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=96.3
Q ss_pred HHHHHHhccccccCcccccccCCceeceecccccccCCC-cchhhccccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEE
Q 036791 9 TRKIQQFNSYFTEDSLLSFSSKPYQVVNYFSLHCIVRPS-SDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEA 87 (157)
Q Consensus 9 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~ 87 (157)
++|++++|+..+.++.+++.... +. ....+. ...........+|||+||++++++++|+++|+.||.|..+
T Consensus 163 ~~Ai~~lnG~~i~GR~IkV~rp~----~~----p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~sv 234 (612)
T TIGR01645 163 QLALEQMNGQMLGGRNIKVGRPS----NM----PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKC 234 (612)
T ss_pred HHHHHhcCCeEEecceeeecccc----cc----cccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEE
Confidence 66777888888888877654200 00 000000 0011111234689999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCCC
Q 036791 88 TIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSR 138 (157)
Q Consensus 88 ~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~~ 138 (157)
.+..++.+++++|||||+|.+.++|.+|++.||+..|+|+.|+|.++.++.
T Consensus 235 rl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 235 QLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred EEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 999999999999999999999999999999999999999999999998654
No 5
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=9e-19 Score=114.81 Aligned_cols=86 Identities=26% Similarity=0.305 Sum_probs=80.1
Q ss_pred hhccccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 036791 51 IMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIF 130 (157)
Q Consensus 51 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~ 130 (157)
.......++||||||+..++|+.|.++|+++|+|..|.+-.|+.+...+|||||+|.+.++|+.|++.++|..++.++|+
T Consensus 30 ~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir 109 (153)
T KOG0121|consen 30 LEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIR 109 (153)
T ss_pred HHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccccee
Confidence 33445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecC
Q 036791 131 VDNVRP 136 (157)
Q Consensus 131 v~~~~~ 136 (157)
++|.-.
T Consensus 110 ~D~D~G 115 (153)
T KOG0121|consen 110 IDWDAG 115 (153)
T ss_pred eecccc
Confidence 999764
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=3.2e-18 Score=124.92 Aligned_cols=126 Identities=17% Similarity=0.215 Sum_probs=99.2
Q ss_pred hhHHHHHHHHhccccccCcccccccCCceeceecccccccCCCcchhhccccccEEEEcCCCCCCCHHHHHHHHhcCCCe
Q 036791 5 SLIQTRKIQQFNSYFTEDSLLSFSSKPYQVVNYFSLHCIVRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQV 84 (157)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i 84 (157)
+..-|+||++||+.++.++.++.....-.+.+..... ..=.+-......+.++||||||+.-++|++|++.|+.||+|
T Consensus 114 k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~--ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I 191 (321)
T KOG0148|consen 114 KEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKP--LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPI 191 (321)
T ss_pred hHHHHHHHHHhCCeeeccceeeccccccCccccCCCC--ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcc
Confidence 4456999999999999999998776322221110000 00011123333556899999999999999999999999999
Q ss_pred eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCCC
Q 036791 85 TEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSR 138 (157)
Q Consensus 85 ~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~~ 138 (157)
.+|++.++ +||+||.|.++|.|.+||..+|+.+|.|..+++.|.+...
T Consensus 192 ~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 192 QEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred eEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 99999887 5899999999999999999999999999999999987643
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.78 E-value=2.2e-18 Score=134.03 Aligned_cols=83 Identities=27% Similarity=0.405 Sum_probs=79.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
..+|||+|||..+++++|+++|+.||.|..|.|+.++.+|+++|||||+|.+.++|++||+.|+|..|.|++|+|.++++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 036791 137 SRR 139 (157)
Q Consensus 137 ~~~ 139 (157)
...
T Consensus 83 ~~~ 85 (352)
T TIGR01661 83 SSD 85 (352)
T ss_pred ccc
Confidence 653
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=4.1e-18 Score=132.02 Aligned_cols=84 Identities=21% Similarity=0.310 Sum_probs=79.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||+++++++|+++|+.||.|..|.|+.|+.+++++|||||+|.++++|++|++.|++..|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 036791 135 RPSR 138 (157)
Q Consensus 135 ~~~~ 138 (157)
++..
T Consensus 185 ~p~~ 188 (346)
T TIGR01659 185 RPGG 188 (346)
T ss_pred cccc
Confidence 7643
No 9
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.76 E-value=1.1e-17 Score=100.81 Aligned_cols=70 Identities=37% Similarity=0.595 Sum_probs=67.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 036791 60 WRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIF 130 (157)
Q Consensus 60 l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~ 130 (157)
|||+|||.++++++|+++|+.||.+..+.+..+ .++..+|+|||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 6789999999999999999999999999999999885
No 10
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=1.4e-17 Score=119.98 Aligned_cols=82 Identities=27% Similarity=0.436 Sum_probs=79.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
+..+|-|.||+.++++.+|+++|.+||.|.++.+.+|+.||.++|||||.|.+.++|.+||..|||.=+++-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 036791 136 PS 137 (157)
Q Consensus 136 ~~ 137 (157)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 11
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=2.2e-17 Score=118.45 Aligned_cols=81 Identities=33% Similarity=0.468 Sum_probs=74.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++||||+|+|.+..+.|++.|++||+|.+..++.|+.+|+++||+||+|.+.+.|.+|++- ..-.|+||+..+.++
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 4457899999999999999999999999999999999999999999999999999999999985 456789999988887
Q ss_pred cC
Q 036791 135 RP 136 (157)
Q Consensus 135 ~~ 136 (157)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 43
No 12
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=1.3e-16 Score=117.83 Aligned_cols=92 Identities=24% Similarity=0.390 Sum_probs=84.0
Q ss_pred CCCcchhhccccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Q 036791 45 RPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124 (157)
Q Consensus 45 ~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~ 124 (157)
.|..+......+-+||||+-|+..++|..|+..|+.||.|..|.|+.++.||+++|||||+|..+.+...|-+..+|..|
T Consensus 89 dP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I 168 (335)
T KOG0113|consen 89 DPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI 168 (335)
T ss_pred CCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee
Confidence 34555555556678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeecC
Q 036791 125 DGRVIFVDNVRP 136 (157)
Q Consensus 125 ~g~~l~v~~~~~ 136 (157)
+|+.|.|++-+.
T Consensus 169 dgrri~VDvERg 180 (335)
T KOG0113|consen 169 DGRRILVDVERG 180 (335)
T ss_pred cCcEEEEEeccc
Confidence 999999998754
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.70 E-value=9e-17 Score=132.11 Aligned_cols=82 Identities=29% Similarity=0.523 Sum_probs=77.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
...+|||+||++.+++++|+++|+.||.|..+.++.+ .+|+++|||||.|.+.++|.+|+..|||..+.|++|.|.++.
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 4567999999999999999999999999999999999 789999999999999999999999999999999999999998
Q ss_pred CCC
Q 036791 136 PSR 138 (157)
Q Consensus 136 ~~~ 138 (157)
.+.
T Consensus 363 ~k~ 365 (562)
T TIGR01628 363 RKE 365 (562)
T ss_pred CcH
Confidence 654
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.69 E-value=5.8e-16 Score=125.83 Aligned_cols=81 Identities=17% Similarity=0.264 Sum_probs=77.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
..+|||+|||..+++++|+++|..||.|..+.++.++.+|.++|||||+|.+.++|..|+..|+|..|+|+.|.|.++..
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred C
Q 036791 137 S 137 (157)
Q Consensus 137 ~ 137 (157)
.
T Consensus 375 ~ 375 (509)
T TIGR01642 375 G 375 (509)
T ss_pred C
Confidence 4
No 15
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.68 E-value=5e-16 Score=93.86 Aligned_cols=70 Identities=37% Similarity=0.544 Sum_probs=64.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 036791 60 WRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIF 130 (157)
Q Consensus 60 l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~ 130 (157)
|||+|||+++++++|.++|+.||.|..+.+..++. +..+|+|||+|.+.++|.+|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 89999999999999999999999999999999874
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.68 E-value=2e-16 Score=129.24 Aligned_cols=80 Identities=30% Similarity=0.439 Sum_probs=76.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..++|||+||++.+++++|+++|.+||.|.++.++.|+.+|+++|||||+|.+.++|++|++.|||..++|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999998654
No 17
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.68 E-value=9.6e-16 Score=123.11 Aligned_cols=79 Identities=32% Similarity=0.449 Sum_probs=76.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..+|||+|||..+++++|+++|..||.|..+.++.++.+|+++|||||+|.+.++|.+|+..|+|..|.|++|+|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 5789999999999999999999999999999999999889999999999999999999999999999999999999975
No 18
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=4e-16 Score=107.48 Aligned_cols=79 Identities=22% Similarity=0.279 Sum_probs=71.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
-.++||||||+..+++.+|+..|..||.+..|-|-.. ..|||||+|++..+|+.|+..|+|..|+|..|+|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3578999999999999999999999999988866543 46999999999999999999999999999999999998
Q ss_pred CCCC
Q 036791 136 PSRR 139 (157)
Q Consensus 136 ~~~~ 139 (157)
....
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6544
No 19
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.4e-17 Score=115.63 Aligned_cols=86 Identities=26% Similarity=0.402 Sum_probs=80.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..++||||+|...+++.-|...|-.||+|..+.++.|-.++++|||+||+|.-.++|.+||..||+.+|.|+.|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 036791 136 PSRRYN 141 (157)
Q Consensus 136 ~~~~~~ 141 (157)
|..-..
T Consensus 89 P~kike 94 (298)
T KOG0111|consen 89 PEKIKE 94 (298)
T ss_pred CccccC
Confidence 864443
No 20
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.67 E-value=1.3e-15 Score=112.30 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=70.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
.++|||+||++.+++++|+++|+.||.|.++.|+.++. .+|||||+|.+.++|+.|+. |+|..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 46899999999999999999999999999999998853 57999999999999999996 999999999999999864
No 21
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=1.1e-16 Score=123.36 Aligned_cols=123 Identities=20% Similarity=0.199 Sum_probs=99.2
Q ss_pred cccCcccccccCCceeceeccccccc---------------------CCCcchhhccccccEEEEcCCCCCCCHHHHHHH
Q 036791 19 FTEDSLLSFSSKPYQVVNYFSLHCIV---------------------RPSSDLIMQLVNVSFWRCISVSFSTTKEMLADA 77 (157)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~ 77 (157)
.+..|..+..+++++++.|.....+. ++-+....+.....+||||.|+..++|.+++++
T Consensus 65 nl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~i 144 (510)
T KOG0144|consen 65 NLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREI 144 (510)
T ss_pred EeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHH
Confidence 34556666778899999988775521 122222333344678999999999999999999
Q ss_pred HhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc-c--CCcEEEEEeecCCCCCCC
Q 036791 78 FSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL-L--DGRVIFVDNVRPSRRYNT 142 (157)
Q Consensus 78 f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~-~--~g~~l~v~~~~~~~~~~~ 142 (157)
|++||.|++|.|++| ..+.+||||||.|.+.+.|..||++|||.. + +..+|.|+|+.+++++..
T Consensus 145 Fs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 145 FSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred HHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchH
Confidence 999999999999999 569999999999999999999999999987 3 358999999998766543
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.67 E-value=9.2e-16 Score=125.09 Aligned_cols=118 Identities=17% Similarity=0.085 Sum_probs=90.0
Q ss_pred hhhHHHHHHHHhccccccCcccccccCCceeceecccccccCCCcchhhccccccEEEEcCCCCCCCHHHHHHHHhcCCC
Q 036791 4 QSLIQTRKIQQFNSYFTEDSLLSFSSKPYQVVNYFSLHCIVRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQ 83 (157)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~ 83 (157)
+.....+|+.++++|.+......... ..++. ..+ .......++|||+|||+++++++|+++|++||.
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~--------g~Pp~----~~~-~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~ 84 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKY--------GGPPP----GWS-GVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGP 84 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccC--------CCCCC----ccc-CCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCC
Confidence 34455678888888887655442221 11111 111 111234578999999999999999999999999
Q ss_pred eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC-CcEEEEEeec
Q 036791 84 VTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD-GRVIFVDNVR 135 (157)
Q Consensus 84 i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~-g~~l~v~~~~ 135 (157)
|..++|++| .+|+++|||||+|.+.++|++||+.||+..+. |+.|.|..+.
T Consensus 85 I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 85 IYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred EEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 999999999 88999999999999999999999999999884 7777776553
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.66 E-value=7.3e-16 Score=126.78 Aligned_cols=79 Identities=30% Similarity=0.347 Sum_probs=75.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCC
Q 036791 59 FWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPS 137 (157)
Q Consensus 59 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~ 137 (157)
+|||+|||.++++++|+++|++||.|..|++.+|+.+++++|||||+|.+.++|++|++.+++..+.|++|+|.|+...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999998643
No 24
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.66 E-value=1.7e-16 Score=112.07 Aligned_cols=80 Identities=26% Similarity=0.471 Sum_probs=76.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..++|-|-||...++.++|+.+|++||.|-+|.|+.|+.|+..+|||||.|....+|+.|+++|+|.+|+|+.|+|+.++
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999998875
No 25
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=5.7e-16 Score=115.87 Aligned_cols=80 Identities=28% Similarity=0.510 Sum_probs=74.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..+.|+|.|||+...+-||+.+|.+||.|.+|.|+.+ + .-+||||||+|++.++|++|-..|||..+.||+|.|..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN-E-RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN-E-RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEec-c-CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 3467999999999999999999999999999999886 2 3479999999999999999999999999999999999998
Q ss_pred CC
Q 036791 136 PS 137 (157)
Q Consensus 136 ~~ 137 (157)
.+
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 65
No 26
>PLN03213 repressor of silencing 3; Provisional
Probab=99.65 E-value=7.4e-16 Score=120.90 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=71.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCH--HHHHHHHHHhCCCccCCcEEEEEee
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTE--EEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~--~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
..+||||||++.+++++|+.+|..||.|..+.|+ +.+| ||||||+|.+. .++.+||..|||..++|+.|+|..+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 4579999999999999999999999999999998 5667 99999999987 7899999999999999999999999
Q ss_pred cCC
Q 036791 135 RPS 137 (157)
Q Consensus 135 ~~~ 137 (157)
++.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 873
No 27
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=9.1e-16 Score=112.23 Aligned_cols=82 Identities=32% Similarity=0.483 Sum_probs=78.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
...+||+.|...++-++|++.|.+||+|.++++++|..|+|++||+||.|.+.++|++||..|||.=|++|.|+-.|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 036791 137 SR 138 (157)
Q Consensus 137 ~~ 138 (157)
|.
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 76
No 28
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=9.4e-16 Score=101.59 Aligned_cols=84 Identities=27% Similarity=0.303 Sum_probs=79.0
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Q 036791 54 LVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133 (157)
Q Consensus 54 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 133 (157)
....-.|||.++....+++++...|..||.|..+.+.+|+.||..+||+.|+|.+.+.|++|+..+||..|+|..|.|+|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 036791 134 VRPS 137 (157)
Q Consensus 134 ~~~~ 137 (157)
+..+
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 8643
No 29
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.7e-15 Score=110.45 Aligned_cols=116 Identities=25% Similarity=0.317 Sum_probs=98.0
Q ss_pred ccccCcccccccCCceeceeccccccc---------------------CCCcchhhccccccEEEEcCCCCCCCHHHHHH
Q 036791 18 YFTEDSLLSFSSKPYQVVNYFSLHCIV---------------------RPSSDLIMQLVNVSFWRCISVSFSTTKEMLAD 76 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~ 76 (157)
+.+-++.++..+-+|++|+|..+..+. +|+++. ....+|||.+||..++..+|++
T Consensus 71 cKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~----Ik~aNLYvSGlPktMtqkelE~ 146 (360)
T KOG0145|consen 71 CKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDS----IKDANLYVSGLPKTMTQKELEQ 146 (360)
T ss_pred eeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhh----hcccceEEecCCccchHHHHHH
Confidence 445566677788889999998876632 334433 3467899999999999999999
Q ss_pred HHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC--cEEEEEeecCC
Q 036791 77 AFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG--RVIFVDNVRPS 137 (157)
Q Consensus 77 ~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g--~~l~v~~~~~~ 137 (157)
+|+.||.|...+|+.|..+|.++|.+||.|....+|+.||+.|||..-.| .+|.|.++...
T Consensus 147 iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 147 IFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred HHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 99999999999999999999999999999999999999999999998655 78999998644
No 30
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=5.7e-15 Score=114.39 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=76.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc-CCcEEEEEe
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL-DGRVIFVDN 133 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~-~g~~l~v~~ 133 (157)
...+.||||.||.++.|++|.-+|.+.|.|-++++++|+.+|.+||||||.|.+.++|+.||+.||+.+| .|+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999999998 588888887
Q ss_pred ecC
Q 036791 134 VRP 136 (157)
Q Consensus 134 ~~~ 136 (157)
+..
T Consensus 161 Sva 163 (506)
T KOG0117|consen 161 SVA 163 (506)
T ss_pred eee
Confidence 654
No 31
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.60 E-value=1.1e-14 Score=116.91 Aligned_cols=81 Identities=28% Similarity=0.400 Sum_probs=76.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
...+|||+|||..+++++|+++|.+||.|..|.++.++.+++++|||||+|.+.++|.+||. |+|..+.|++|.|.++.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 45789999999999999999999999999999999999999999999999999999999997 89999999999999876
Q ss_pred CC
Q 036791 136 PS 137 (157)
Q Consensus 136 ~~ 137 (157)
..
T Consensus 167 ~~ 168 (457)
T TIGR01622 167 AE 168 (457)
T ss_pred hh
Confidence 54
No 32
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.60 E-value=1.8e-15 Score=104.85 Aligned_cols=80 Identities=28% Similarity=0.308 Sum_probs=77.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
...+|||+||+..+++..|.++|-+.|.|..+.+++|+.++.++||||++|.++++|+-|++.||...|.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999987
No 33
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.60 E-value=8.6e-16 Score=106.45 Aligned_cols=87 Identities=23% Similarity=0.299 Sum_probs=79.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEA-TIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 133 (157)
....++||+||.+.+++..|...|+.||.+... .++++..||..+||+||.|.+.+.+.+|+.+++|..+.+++++|.+
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 344789999999999999999999999988764 8888989999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 036791 134 VRPSRRYN 141 (157)
Q Consensus 134 ~~~~~~~~ 141 (157)
+..+...+
T Consensus 174 a~k~~~kg 181 (203)
T KOG0131|consen 174 AFKKDTKG 181 (203)
T ss_pred EEecCCCc
Confidence 98765444
No 34
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=9.1e-15 Score=106.69 Aligned_cols=85 Identities=25% Similarity=0.374 Sum_probs=80.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..++|.|.-||..+++++++.+|...|+|+.|++++|+.+|.+-||+||.|-.+++|++|+..|||..+..+.|+|.|++
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 036791 136 PSRRY 140 (157)
Q Consensus 136 ~~~~~ 140 (157)
|....
T Consensus 120 PSs~~ 124 (360)
T KOG0145|consen 120 PSSDS 124 (360)
T ss_pred CChhh
Confidence 87553
No 35
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=3.3e-15 Score=115.32 Aligned_cols=86 Identities=21% Similarity=0.257 Sum_probs=78.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc-c--CCcEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL-L--DGRVIFV 131 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~-~--~g~~l~v 131 (157)
...-++|||-||..|+|++|+++|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+.+||... | +..+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 445579999999999999999999999999999999999999999999999999999999999999887 3 4489999
Q ss_pred EeecCCCCC
Q 036791 132 DNVRPSRRY 140 (157)
Q Consensus 132 ~~~~~~~~~ 140 (157)
+++....++
T Consensus 112 k~Ad~E~er 120 (510)
T KOG0144|consen 112 KYADGERER 120 (510)
T ss_pred cccchhhhc
Confidence 999876555
No 36
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=1.3e-16 Score=110.50 Aligned_cols=80 Identities=24% Similarity=0.422 Sum_probs=75.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
+..-|||||||+..+|.+|-.+|++||.|..|.+++|+.||+++||||+.|++-...--|+..|||..|.||.|+|+...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999998753
No 37
>smart00362 RRM_2 RNA recognition motif.
Probab=99.59 E-value=1.5e-14 Score=86.48 Aligned_cols=72 Identities=33% Similarity=0.505 Sum_probs=67.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 036791 59 FWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132 (157)
Q Consensus 59 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 132 (157)
+|||+|||..+++++|+++|..||.+..+.+..++ +.++|+|||+|.+.++|+.|+..+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999888775 7788999999999999999999999999999998873
No 38
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.57 E-value=1.8e-14 Score=106.69 Aligned_cols=80 Identities=30% Similarity=0.540 Sum_probs=76.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
..+|||+|||..+++++|.++|..||.+..+.+..++.+++.+|||||.|.+.++|..|+..+++..+.|++|.|.+..+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58899999999999999999999999999999999988999999999999999999999999999999999999999653
No 39
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.57 E-value=2.6e-14 Score=104.00 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=69.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..++|||+||++.+++++|+++|+.||.|..|.|+.+ +..+++|||+|.++++++.|+. |+|..|.+++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 3578999999999999999999999999999999988 4456899999999999999995 89999999999998754
No 40
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=2.5e-14 Score=90.72 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=71.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
...|||.|||+.++.+++.++|.+||.|..+++-..+. .+|-|||.|++..+|.+|++.|+|..++++.|.|-+..+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 46799999999999999999999999999999976644 489999999999999999999999999999999998765
Q ss_pred C
Q 036791 137 S 137 (157)
Q Consensus 137 ~ 137 (157)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 3
No 41
>smart00360 RRM RNA recognition motif.
Probab=99.57 E-value=2.5e-14 Score=85.18 Aligned_cols=71 Identities=37% Similarity=0.592 Sum_probs=66.7
Q ss_pred EcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 036791 62 CISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132 (157)
Q Consensus 62 V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 132 (157)
|+|||..+++++|+++|..||.|..+.+..++.++.++|+|||+|.+.++|.+|+..+++..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887788999999999999999999999999999999998873
No 42
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.6e-14 Score=111.95 Aligned_cols=77 Identities=34% Similarity=0.454 Sum_probs=71.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...+-|||.||+.++|++.|+++|..||.|.+|..++| ||||.|.+.++|.+|++.+||.+|+|..|.|.++
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 34578999999999999999999999999999988766 8999999999999999999999999999999999
Q ss_pred cCCCC
Q 036791 135 RPSRR 139 (157)
Q Consensus 135 ~~~~~ 139 (157)
+|..+
T Consensus 329 KP~~k 333 (506)
T KOG0117|consen 329 KPVDK 333 (506)
T ss_pred CChhh
Confidence 98543
No 43
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.55 E-value=1.3e-14 Score=114.61 Aligned_cols=82 Identities=24% Similarity=0.427 Sum_probs=78.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCC
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPS 137 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~ 137 (157)
..+||||+|+++++++|..+|+..|.|..++++.|+.+|+.+||||++|.+.+++..|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CC
Q 036791 138 RR 139 (157)
Q Consensus 138 ~~ 139 (157)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 44
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=4e-14 Score=98.61 Aligned_cols=80 Identities=16% Similarity=0.205 Sum_probs=71.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+...|||+|||.++.+.+++.+|.+||.|..|.+... -....||||+|++..+|+.||..-+|..++|..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 35678999999999999999999999999999987443 234689999999999999999999999999999999998
Q ss_pred cCC
Q 036791 135 RPS 137 (157)
Q Consensus 135 ~~~ 137 (157)
+..
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 754
No 45
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.53 E-value=1.1e-13 Score=113.13 Aligned_cols=75 Identities=32% Similarity=0.507 Sum_probs=69.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcC--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQF--GQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.++|||+||++.+++++|+++|++| |.|.+|.+++ +||||+|.+.++|++|++.||+..|+|+.|+|.|+
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4689999999999999999999999 9999987653 59999999999999999999999999999999999
Q ss_pred cCCCC
Q 036791 135 RPSRR 139 (157)
Q Consensus 135 ~~~~~ 139 (157)
++...
T Consensus 305 kp~~~ 309 (578)
T TIGR01648 305 KPVDK 309 (578)
T ss_pred cCCCc
Confidence 87543
No 46
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.53 E-value=2.1e-13 Score=81.85 Aligned_cols=74 Identities=36% Similarity=0.510 Sum_probs=68.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Q 036791 59 FWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133 (157)
Q Consensus 59 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 133 (157)
+|+|+|||..+++++|+++|..+|.|..+.+..++.+ ..+|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999887554 7789999999999999999999999999999999864
No 47
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.51 E-value=1.6e-13 Score=111.15 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=70.8
Q ss_pred cccEEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 56 NVSFWRCISVSF-STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 56 ~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
+..+|||+||++ .+++++|+++|+.||.|..+.++.++ +|+|||+|.+.++|..|+..|||..|.|++|+|.++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 456899999998 69999999999999999999998863 589999999999999999999999999999999998
Q ss_pred cCC
Q 036791 135 RPS 137 (157)
Q Consensus 135 ~~~ 137 (157)
+..
T Consensus 349 ~~~ 351 (481)
T TIGR01649 349 KQQ 351 (481)
T ss_pred ccc
Confidence 653
No 48
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=2.2e-13 Score=108.07 Aligned_cols=85 Identities=28% Similarity=0.388 Sum_probs=77.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
.-.|.|.|||+.+...+|+.+|+.||.+..+.|+.. ..|+.+|||||.|....+|..|++.+|+..|+||+|.|+||-+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k-~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK-KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC-CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 346889999999999999999999999999999966 4477779999999999999999999999999999999999988
Q ss_pred CCCCCC
Q 036791 137 SRRYNT 142 (157)
Q Consensus 137 ~~~~~~ 142 (157)
+..+..
T Consensus 196 Kd~ye~ 201 (678)
T KOG0127|consen 196 KDTYED 201 (678)
T ss_pred cccccc
Confidence 766544
No 49
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.50 E-value=6.7e-13 Score=107.51 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=68.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC--cEEEEEe
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG--RVIFVDN 133 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g--~~l~v~~ 133 (157)
...+|||+||++.+++++|+++|+.||.|.++.+..+. .+|+|||+|.+.++|.+|++.|||..|.| ..|+|.|
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~ 170 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEY 170 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEE
Confidence 34579999999999999999999999999999887653 24789999999999999999999999975 4899999
Q ss_pred ecC
Q 036791 134 VRP 136 (157)
Q Consensus 134 ~~~ 136 (157)
+++
T Consensus 171 sk~ 173 (481)
T TIGR01649 171 AKP 173 (481)
T ss_pred ecC
Confidence 875
No 50
>smart00361 RRM_1 RNA recognition motif.
Probab=99.45 E-value=6.6e-13 Score=80.33 Aligned_cols=61 Identities=36% Similarity=0.603 Sum_probs=55.0
Q ss_pred HHHHHHHHh----cCCCeeEEE-EeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q 036791 71 KEMLADAFS----QFGQVTEAT-IIMDIGK--NRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131 (157)
Q Consensus 71 ~~~l~~~f~----~~G~i~~~~-~~~~~~~--~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v 131 (157)
+++|+++|+ +||.|.++. ++.++.+ +.++|++||.|.+.++|.+|++.|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 467888888 999999995 7777666 889999999999999999999999999999999976
No 51
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=8.9e-14 Score=105.80 Aligned_cols=75 Identities=32% Similarity=0.480 Sum_probs=73.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 132 (157)
+.||||.|.+.+.|+.|+..|..||.|..+.+.+|+.|++++||+||+|+-++.|+-|++.|||..++||.|+|.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 569999999999999999999999999999999999999999999999999999999999999999999999987
No 52
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.44 E-value=1e-12 Score=76.00 Aligned_cols=56 Identities=34% Similarity=0.615 Sum_probs=50.5
Q ss_pred HHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 74 LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 74 l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
|.++|++||.|..+.+.... +++|||+|.+.++|.+|++.|||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999887652 689999999999999999999999999999999986
No 53
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=4.8e-13 Score=101.86 Aligned_cols=120 Identities=14% Similarity=0.160 Sum_probs=93.7
Q ss_pred HHHHHhccccccCcccccccCCceeceecccccccCCCcchhhccccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEE
Q 036791 10 RKIQQFNSYFTEDSLLSFSSKPYQVVNYFSLHCIVRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATI 89 (157)
Q Consensus 10 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~ 89 (157)
=|+++||+.++.++.+++.. + ...+.+...-+...........|||..+.++.+++||+.+|+.||.|..|.+
T Consensus 170 LAlEqMNg~mlGGRNiKVgr----P---sNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~L 242 (544)
T KOG0124|consen 170 LALEQMNGQMLGGRNIKVGR----P---SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQL 242 (544)
T ss_pred HHHHHhccccccCccccccC----C---CCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEe
Confidence 46788999999999887651 0 0000000000111122223457999999999999999999999999999999
Q ss_pred eecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 90 IMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 90 ~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
-+++..+.++||+|++|.+......|+..||-..++|..|+|..+-.
T Consensus 243 Ar~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 243 ARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred eccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 99988889999999999999999999999999999999999987753
No 54
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=2.6e-12 Score=100.50 Aligned_cols=79 Identities=32% Similarity=0.501 Sum_probs=73.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCCCC
Q 036791 60 WRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSRR 139 (157)
Q Consensus 60 l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~~~ 139 (157)
+||.||++.++.++|.++|+.||.|..|++..+ .+| ++|| ||.|.+++.|.+|++.+||..+.|++|.|.....+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~-~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATD-ENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEc-CCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 999999999999999999999999999999998 446 8999 9999999999999999999999999999999887666
Q ss_pred CC
Q 036791 140 YN 141 (157)
Q Consensus 140 ~~ 141 (157)
+.
T Consensus 156 r~ 157 (369)
T KOG0123|consen 156 RE 157 (369)
T ss_pred hc
Confidence 54
No 55
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.41 E-value=5.3e-13 Score=98.76 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=74.2
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Q 036791 54 LVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133 (157)
Q Consensus 54 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 133 (157)
....++|+||||.+.++..+|+..|.+||.+.++.|+++ |+||.|.-.++|..|++.|++.++.|++++|+.
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 345678999999999999999999999999999999876 899999999999999999999999999999999
Q ss_pred ecCCCCCCCC
Q 036791 134 VRPSRRYNTD 143 (157)
Q Consensus 134 ~~~~~~~~~~ 143 (157)
+.++..-..+
T Consensus 147 stsrlrtapg 156 (346)
T KOG0109|consen 147 STSRLRTAPG 156 (346)
T ss_pred eccccccCCC
Confidence 9887554433
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.6e-12 Score=103.27 Aligned_cols=80 Identities=34% Similarity=0.446 Sum_probs=74.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-----CC-CccCCcEEEE
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDM-----NG-KLLDGRVIFV 131 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l-----~g-~~~~g~~l~v 131 (157)
.+|||.|||++++++.|.+.|++||.|..+.++.++.|+.++|.|||.|.+..+|.+||+.. .| ..|.||.|.|
T Consensus 293 ~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv 372 (678)
T KOG0127|consen 293 KTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKV 372 (678)
T ss_pred ceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEee
Confidence 68999999999999999999999999999999999999999999999999999999999976 23 4578999999
Q ss_pred EeecCC
Q 036791 132 DNVRPS 137 (157)
Q Consensus 132 ~~~~~~ 137 (157)
..+-++
T Consensus 373 ~~Av~R 378 (678)
T KOG0127|consen 373 TLAVTR 378 (678)
T ss_pred eeccch
Confidence 998654
No 57
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=9.8e-13 Score=96.51 Aligned_cols=85 Identities=24% Similarity=0.300 Sum_probs=81.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||-.||.+..+.+|.++|..||.|...++..|+.|..+++|+||.|.+...++.||.+|||..|+-++|+|.+.
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 036791 135 RPSRR 139 (157)
Q Consensus 135 ~~~~~ 139 (157)
+|+..
T Consensus 363 RPkda 367 (371)
T KOG0146|consen 363 RPKDA 367 (371)
T ss_pred Ccccc
Confidence 98754
No 58
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.35 E-value=1.5e-12 Score=103.24 Aligned_cols=77 Identities=35% Similarity=0.566 Sum_probs=73.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 60 WRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 60 l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
||||||.+++++++|+.+|..||.|..|.+.+|..||.++||+|++|.+.++|.+|++.|||.+|-|+.|+|....-
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 89999999999999999999999999999999988999999999999999999999999999999999999987643
No 59
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.34 E-value=5e-12 Score=90.62 Aligned_cols=80 Identities=19% Similarity=0.278 Sum_probs=72.6
Q ss_pred ccEEEEcCCCCCCCHHHHHH----HHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 036791 57 VSFWRCISVSFSTTKEMLAD----AFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~----~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 132 (157)
..||||.||+..+..++|+. +|+.||.|..|.... +.+.+|-|||.|.+.+.|-.|+..|+|..+.|++++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34899999999999998888 999999999887654 47899999999999999999999999999999999999
Q ss_pred eecCCCC
Q 036791 133 NVRPSRR 139 (157)
Q Consensus 133 ~~~~~~~ 139 (157)
||+.+..
T Consensus 86 yA~s~sd 92 (221)
T KOG4206|consen 86 YAKSDSD 92 (221)
T ss_pred cccCccc
Confidence 9987644
No 60
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=2.4e-12 Score=94.47 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=78.0
Q ss_pred hccccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC-C--cE
Q 036791 52 MQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD-G--RV 128 (157)
Q Consensus 52 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~-g--~~ 128 (157)
.+...+++||||.|...-.|+|++.+|..||.|.+|.+++.. .|.++||+||.|.+..+|+.||..|||...+ | ..
T Consensus 14 srg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSS 92 (371)
T KOG0146|consen 14 SRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSS 92 (371)
T ss_pred cCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccc
Confidence 333467889999999999999999999999999999999984 5899999999999999999999999998753 3 67
Q ss_pred EEEEeecCCCCCC
Q 036791 129 IFVDNVRPSRRYN 141 (157)
Q Consensus 129 l~v~~~~~~~~~~ 141 (157)
|.|+++...++|.
T Consensus 93 LVVK~ADTdkER~ 105 (371)
T KOG0146|consen 93 LVVKFADTDKERT 105 (371)
T ss_pred eEEEeccchHHHH
Confidence 9999998766553
No 61
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.32 E-value=6.8e-12 Score=97.52 Aligned_cols=79 Identities=20% Similarity=0.276 Sum_probs=73.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHh-cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 57 VSFWRCISVSFSTTKEMLADAFS-QFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
.+.+||.|||+++.|.+|+.+|. +-|+|..|.++.| .+||.+|||.|+|+++|.+++|++.||...+.|++|.|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 35699999999999999999997 6799999999999 679999999999999999999999999999999999998765
Q ss_pred C
Q 036791 136 P 136 (157)
Q Consensus 136 ~ 136 (157)
-
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 3
No 62
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.31 E-value=3.5e-12 Score=94.47 Aligned_cols=71 Identities=25% Similarity=0.406 Sum_probs=68.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCC
Q 036791 59 FWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPS 137 (157)
Q Consensus 59 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~ 137 (157)
+|||||||..+++.+|+.+|++||.|.+|.|+++ ||||..++...++.||..|||..|.|..|.|+-++++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 6999999999999999999999999999999876 8999999999999999999999999999999999887
No 63
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.28 E-value=5.3e-11 Score=96.89 Aligned_cols=129 Identities=16% Similarity=0.121 Sum_probs=86.2
Q ss_pred HHHHHHHhccccccCcccccccCCceecee--cccc---cccCCCcc-----hhhccccccEEEEcCCCCCC--------
Q 036791 8 QTRKIQQFNSYFTEDSLLSFSSKPYQVVNY--FSLH---CIVRPSSD-----LIMQLVNVSFWRCISVSFST-------- 69 (157)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~-----~~~~~~~~~~l~V~nl~~~~-------- 69 (157)
-+.|++.+|+..+.+..+.+.........- .... ........ ..........|+|.|+...-
T Consensus 350 a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~ 429 (509)
T TIGR01642 350 TDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEY 429 (509)
T ss_pred HHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchH
Confidence 357888899999888877654311100000 0000 00000000 00111234678999986321
Q ss_pred --CHHHHHHHHhcCCCeeEEEEeecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 70 --TKEMLADAFSQFGQVTEATIIMDI---GKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 70 --~~~~l~~~f~~~G~i~~~~~~~~~---~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
..++|+++|.+||.|..|.|+.+. .++.++|++||+|.+.++|++|+..|||..|+|+.|.|.|...
T Consensus 430 ~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 430 EEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 125789999999999999998652 3356789999999999999999999999999999999999764
No 64
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=1e-11 Score=101.17 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=75.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
.++|.|.|||+..+-.+++.+|..||.+..|+|+.-...+.++|||||+|-++.+|.+|+.+|..+-++||.|.++|+..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 56899999999999999999999999999999988755677899999999999999999999998889999999999976
Q ss_pred C
Q 036791 137 S 137 (157)
Q Consensus 137 ~ 137 (157)
.
T Consensus 693 d 693 (725)
T KOG0110|consen 693 D 693 (725)
T ss_pred c
Confidence 4
No 65
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.26 E-value=2.6e-11 Score=85.82 Aligned_cols=82 Identities=24% Similarity=0.271 Sum_probs=75.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcC-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQF-GQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...-+||..+|.-+.+..+..+|.++ |.+...++.+++.||.++|||||+|.+.+.|.-|-+.||+..++++.|.+.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34568999999999999999999988 78888899899999999999999999999999999999999999999999987
Q ss_pred cCC
Q 036791 135 RPS 137 (157)
Q Consensus 135 ~~~ 137 (157)
.|.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 775
No 66
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.25 E-value=1.9e-10 Score=82.61 Aligned_cols=89 Identities=13% Similarity=0.187 Sum_probs=71.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeec-CCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC---CcEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMD-IGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD---GRVIF 130 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~---g~~l~ 130 (157)
...+||||.+||.++...+|..+|..|-.-+.+.+-.. +.....+-+||++|.+..+|.+|+++|||..++ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 44789999999999999999999999855555544332 222234589999999999999999999999985 78999
Q ss_pred EEeecCCCCCCCC
Q 036791 131 VDNVRPSRRYNTD 143 (157)
Q Consensus 131 v~~~~~~~~~~~~ 143 (157)
|+++++...+.+.
T Consensus 112 iElAKSNtK~kr~ 124 (284)
T KOG1457|consen 112 IELAKSNTKRKRR 124 (284)
T ss_pred eeehhcCcccccC
Confidence 9999987666554
No 67
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=4.3e-11 Score=90.52 Aligned_cols=80 Identities=21% Similarity=0.256 Sum_probs=69.0
Q ss_pred hhccccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-CccCCcEE
Q 036791 51 IMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNG-KLLDGRVI 129 (157)
Q Consensus 51 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g-~~~~g~~l 129 (157)
+..+...++|||++|...+++.+|+.+|.+||+|..+.+... +++|||+|.+.+.|+.|.+.+-. ..|+|.+|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 344456789999999999999999999999999999988765 46899999999999988765444 44799999
Q ss_pred EEEeecC
Q 036791 130 FVDNVRP 136 (157)
Q Consensus 130 ~v~~~~~ 136 (157)
.|.|.++
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999998
No 68
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.8e-11 Score=93.03 Aligned_cols=80 Identities=26% Similarity=0.369 Sum_probs=76.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
..-|||-.|.+-+++++|+-+|+.||.|..|.+++|+.||.+..||||+|.+.+++++|.-.|++..|+.++|+|.++.+
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999754
No 69
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.18 E-value=1.1e-10 Score=88.90 Aligned_cols=84 Identities=25% Similarity=0.391 Sum_probs=77.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
..+|||++||.++++.++++.|.+||.|..+.++.|..+.+.+||+||.|.+++.+++++.. .-+.|+|+.+.|..|.|
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeeccc
Confidence 45899999999999999999999999999999999999999999999999999999999874 77889999999999998
Q ss_pred CCCCC
Q 036791 137 SRRYN 141 (157)
Q Consensus 137 ~~~~~ 141 (157)
+....
T Consensus 176 k~~~~ 180 (311)
T KOG4205|consen 176 KEVMQ 180 (311)
T ss_pred hhhcc
Confidence 76543
No 70
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.14 E-value=1.5e-10 Score=95.21 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=71.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCC
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPS 137 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~ 137 (157)
+|||||+|+.++++.+|..+|+.||+|.+|.++.. +|||||.+....+|++|+..|....+.++.|+|.|+..+
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 68999999999999999999999999999988664 689999999999999999999999999999999999865
Q ss_pred CCC
Q 036791 138 RRY 140 (157)
Q Consensus 138 ~~~ 140 (157)
.-+
T Consensus 496 G~k 498 (894)
T KOG0132|consen 496 GPK 498 (894)
T ss_pred Ccc
Confidence 433
No 71
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.12 E-value=1.6e-10 Score=90.00 Aligned_cols=75 Identities=35% Similarity=0.402 Sum_probs=68.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|+|.|||.++||..|++-|..||.+..+.|+. +|+.+| .|.|.++++|+.|+..|+|..++|+.|.|+|+
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 4567899999999999999999999999999998843 488887 99999999999999999999999999999874
No 72
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.12 E-value=8.3e-11 Score=89.62 Aligned_cols=86 Identities=30% Similarity=0.418 Sum_probs=77.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
...++||++|+|.++++.|++.|.+||++..+.+++|+.+++.+||+||+|.+.+...+++.. ....|+|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 457899999999999999999999999999999999999999999999999999998888875 4677999999999998
Q ss_pred CCCCCCC
Q 036791 136 PSRRYNT 142 (157)
Q Consensus 136 ~~~~~~~ 142 (157)
++.....
T Consensus 84 ~r~~~~~ 90 (311)
T KOG4205|consen 84 SREDQTK 90 (311)
T ss_pred Ccccccc
Confidence 8765543
No 73
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.11 E-value=1.6e-10 Score=84.23 Aligned_cols=83 Identities=27% Similarity=0.388 Sum_probs=76.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.++..||+|.|.-+++++.|-..|.+|-.-....+++++.||+++||+||.|.+..++..|++.|+|..++.++|+++.+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 45678999999999999999999999988888899999999999999999999999999999999999999999998766
Q ss_pred cCC
Q 036791 135 RPS 137 (157)
Q Consensus 135 ~~~ 137 (157)
.-+
T Consensus 268 ~wk 270 (290)
T KOG0226|consen 268 EWK 270 (290)
T ss_pred hHH
Confidence 543
No 74
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=3.9e-10 Score=88.33 Aligned_cols=74 Identities=30% Similarity=0.316 Sum_probs=69.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCCC
Q 036791 59 FWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSR 138 (157)
Q Consensus 59 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~~ 138 (157)
.|||| +++++.+|.++|+.+|.+..+++.+|. | +.|||||.|.++.+|++||..||...+.|++++|-|+....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 48999 999999999999999999999999996 5 99999999999999999999999999999999999987644
No 75
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.09 E-value=4.5e-10 Score=90.12 Aligned_cols=80 Identities=28% Similarity=0.411 Sum_probs=75.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
..+|||.+|...+...+|+.+|++||.|....++.+-.+--.++|+||++.+.++|.++|+.||...|.|+.|.|..++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 46899999999999999999999999999999998877777899999999999999999999999999999999998864
No 76
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.08 E-value=6.6e-10 Score=87.72 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=69.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCC
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPS 137 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~ 137 (157)
.+|||+|||.+++..+|+++|..||.|....|..-...++..+||||+|.+.++++.||.+ +-..|++++|.|+..++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 4699999999999999999999999999987765433355559999999999999999997 577899999999998774
Q ss_pred C
Q 036791 138 R 138 (157)
Q Consensus 138 ~ 138 (157)
.
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 3
No 77
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.08 E-value=8.5e-10 Score=81.23 Aligned_cols=80 Identities=21% Similarity=0.390 Sum_probs=74.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
..+|+|.|||..+.+++|+++|..||.+..+.+.++ .+|.+.|.|-|.|...++|.+|++.+++..++|++|++....+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 367999999999999999999999999999999998 5699999999999999999999999999999999999988654
Q ss_pred C
Q 036791 137 S 137 (157)
Q Consensus 137 ~ 137 (157)
.
T Consensus 162 ~ 162 (243)
T KOG0533|consen 162 P 162 (243)
T ss_pred c
Confidence 3
No 78
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=1.3e-09 Score=89.09 Aligned_cols=77 Identities=31% Similarity=0.380 Sum_probs=69.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 59 FWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKN---RSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 59 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~---~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
+|||.||+++++.++|..+|.+.|.|..+.|...+... .+.|||||+|.+.++|++|++.|+|..|+|+.|.|+++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 49999999999999999999999999999887654321 245999999999999999999999999999999999998
No 79
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=99.01 E-value=3.7e-09 Score=86.62 Aligned_cols=82 Identities=16% Similarity=0.270 Sum_probs=73.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGK---NRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v 131 (157)
...+++||+||++.++++.|-..|..||.|..++|++.+.- ...+-|+||.|-+..+|++|++.|+|..+++..+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 45678999999999999999999999999999999987533 345678999999999999999999999999999999
Q ss_pred EeecC
Q 036791 132 DNVRP 136 (157)
Q Consensus 132 ~~~~~ 136 (157)
.|+++
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 99954
No 80
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.99 E-value=1.5e-09 Score=79.81 Aligned_cols=84 Identities=24% Similarity=0.279 Sum_probs=77.8
Q ss_pred ccccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 036791 53 QLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132 (157)
Q Consensus 53 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 132 (157)
...+...+||+|+...++.++++..|+.||.+..+.++.++.++..+||+||+|.+.+.++.++. |+|..|.|+.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 33566889999999999999999999999999999999999999999999999999999999999 99999999999998
Q ss_pred eecCC
Q 036791 133 NVRPS 137 (157)
Q Consensus 133 ~~~~~ 137 (157)
+.+-+
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87654
No 81
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=1.7e-09 Score=78.09 Aligned_cols=71 Identities=21% Similarity=0.421 Sum_probs=65.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCC
Q 036791 59 FWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPS 137 (157)
Q Consensus 59 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~ 137 (157)
.+|||+||+.+.+.+|+.+|..||.+..+.+. .||+||+|.+..+|..|+..||+..|.|..+.|.+++..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 58999999999999999999999999988664 368899999999999999999999999998999999864
No 82
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.91 E-value=2.2e-08 Score=63.93 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=70.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhc--CCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC----CcEEEE
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQ--FGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD----GRVIFV 131 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~----g~~l~v 131 (157)
+||.|.|||-..+.++|.+++.. .|....+.++.|..++.+.|||||.|.+++.|.+-.+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 57999999999999999998864 377788899999999999999999999999999999999999874 567888
Q ss_pred EeecC
Q 036791 132 DNVRP 136 (157)
Q Consensus 132 ~~~~~ 136 (157)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88764
No 83
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.90 E-value=1e-08 Score=77.79 Aligned_cols=81 Identities=15% Similarity=0.191 Sum_probs=72.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCee--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVT--------EATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG 126 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g 126 (157)
...+.|||.|||.++|.+++.++|+++|-|. .|.+-.+ ..|+.+|=|.+.|...++++-|+..|++..+.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 4456799999999999999999999999775 3677777 459999999999999999999999999999999
Q ss_pred cEEEEEeecC
Q 036791 127 RVIFVDNVRP 136 (157)
Q Consensus 127 ~~l~v~~~~~ 136 (157)
+.|+|..|+=
T Consensus 211 ~~~rVerAkf 220 (382)
T KOG1548|consen 211 KKLRVERAKF 220 (382)
T ss_pred cEEEEehhhh
Confidence 9999998863
No 84
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=6e-09 Score=83.28 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=65.1
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 036791 54 LVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIF 130 (157)
Q Consensus 54 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~ 130 (157)
..+..+|+|-|||..+++++|.++|+.||+|..++. +-..+|..||+|.+..+|++|+++|++..+.|++|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 456689999999999999999999999999999654 344578999999999999999999999999999888
No 85
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.71 E-value=2.8e-08 Score=79.72 Aligned_cols=84 Identities=14% Similarity=0.266 Sum_probs=78.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
...++||++||..+++..+.++...||.+....++.+..+|-++||||.+|.+......|+..|||..+++..|.|..+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCC
Q 036791 136 PSRR 139 (157)
Q Consensus 136 ~~~~ 139 (157)
....
T Consensus 368 ~g~~ 371 (500)
T KOG0120|consen 368 VGAS 371 (500)
T ss_pred ccch
Confidence 6543
No 86
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.64 E-value=1.2e-08 Score=73.13 Aligned_cols=78 Identities=21% Similarity=0.102 Sum_probs=70.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
..+|||+|+...++++-|.++|-..|.|.++.|..++. ++.+ ||||.|.++-...-|++.+||..+.+..+.+.+...
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 46799999999999999999999999999999988744 6666 999999999999999999999999999888877543
No 87
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.54 E-value=9.3e-07 Score=54.38 Aligned_cols=71 Identities=20% Similarity=0.187 Sum_probs=47.7
Q ss_pred cEEEEcCCCCCCCHHH----HHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 036791 58 SFWRCISVSFSTTKEM----LADAFSQFG-QVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~----l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 132 (157)
+.|||.|||.+..... |++++..+| .+..+. .+.|++.|.+.+.|.+|++.|+|..+.|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 3589999999988765 566666775 554441 2569999999999999999999999999999999
Q ss_pred eecCCC
Q 036791 133 NVRPSR 138 (157)
Q Consensus 133 ~~~~~~ 138 (157)
+.....
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 986543
No 88
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.44 E-value=1.3e-06 Score=69.34 Aligned_cols=78 Identities=26% Similarity=0.308 Sum_probs=66.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
...|-+.+|||++|+++|.++|+.++ |..+.+ .+.+|+..|-|||+|.+.+++++|++. +...+..+-|.|-.+.+
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~--~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEI--PRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGG 85 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEE--eccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCC
Confidence 34577899999999999999999995 677444 456899999999999999999999994 77788889999988865
Q ss_pred CC
Q 036791 137 SR 138 (157)
Q Consensus 137 ~~ 138 (157)
.+
T Consensus 86 ~e 87 (510)
T KOG4211|consen 86 AE 87 (510)
T ss_pred cc
Confidence 43
No 89
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.41 E-value=7.2e-07 Score=68.26 Aligned_cols=85 Identities=21% Similarity=0.122 Sum_probs=76.5
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHhcCCCee--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC
Q 036791 54 LVNVSFWRCISVSFSTTKEMLADAFSQFGQVT--------EATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD 125 (157)
Q Consensus 54 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~ 125 (157)
.....+|||.+||..++++++..+|.++|.|. .+.|-++++|++.+|-|-|.|.+...|++|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45566899999999999999999999999775 3567788899999999999999999999999999999999
Q ss_pred CcEEEEEeecCCC
Q 036791 126 GRVIFVDNVRPSR 138 (157)
Q Consensus 126 g~~l~v~~~~~~~ 138 (157)
|..|+|..+..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999887654
No 90
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.33 E-value=2.5e-07 Score=74.07 Aligned_cols=80 Identities=26% Similarity=0.366 Sum_probs=73.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
...++|+.-|...++..+|.++|+..|.|..|.++.|+.++..+|.+||+|.+.+....|| +|.|+.++|.+|.|....
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccH
Confidence 4468889889999999999999999999999999999999999999999999999999999 589999999999998865
Q ss_pred C
Q 036791 136 P 136 (157)
Q Consensus 136 ~ 136 (157)
.
T Consensus 257 a 257 (549)
T KOG0147|consen 257 A 257 (549)
T ss_pred H
Confidence 4
No 91
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.30 E-value=4.8e-06 Score=64.90 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=65.4
Q ss_pred cEEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 58 SFWRCISVSF-STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 58 ~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
..|-|.||.. .+|.+.|..+|.-||+|.+|.|...+. --|.|.|.+...|+-|++.|+|..+.|++|+|.+++-
T Consensus 298 ~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 298 VVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred eEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 4577777755 589999999999999999999988743 3599999999999999999999999999999999863
No 92
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.28 E-value=7e-07 Score=67.83 Aligned_cols=83 Identities=24% Similarity=0.361 Sum_probs=75.8
Q ss_pred cEEE-EcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 58 SFWR-CISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 58 ~~l~-V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
.++| |++++..+++++|+..|..+|.|..+++..++.++..+|+++|.|.....+..++.. +...+.++++.+.+..+
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 4566 999999999999999999999999999999999999999999999999999999887 78889999999999988
Q ss_pred CCCCC
Q 036791 137 SRRYN 141 (157)
Q Consensus 137 ~~~~~ 141 (157)
.....
T Consensus 264 ~~~~~ 268 (285)
T KOG4210|consen 264 RPKSD 268 (285)
T ss_pred Ccccc
Confidence 75543
No 93
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.25 E-value=1.5e-05 Score=57.65 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=66.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC-CcEEEEEe
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD-GRVIFVDN 133 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~-g~~l~v~~ 133 (157)
.+...+|+.|||..++.+.+..+|..|.....++++..+ .+.|||+|.+...+..|...+++..|- ...+.|.+
T Consensus 144 ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 144 PPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred CCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 345679999999999999999999999988999887753 578999999999999999999998875 77888877
Q ss_pred ec
Q 036791 134 VR 135 (157)
Q Consensus 134 ~~ 135 (157)
++
T Consensus 219 a~ 220 (221)
T KOG4206|consen 219 AK 220 (221)
T ss_pred cC
Confidence 64
No 94
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.24 E-value=1.2e-06 Score=63.24 Aligned_cols=64 Identities=17% Similarity=0.174 Sum_probs=53.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~ 124 (157)
+.+|||.||..+++|++|+.+|+.|.....++|.. ...-..+|++|+..+.|..|+..|+|..|
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 46899999999999999999999997666555532 12345799999999999999999998776
No 95
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.15 E-value=1.8e-06 Score=66.14 Aligned_cols=74 Identities=18% Similarity=0.235 Sum_probs=64.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFG--QVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v 131 (157)
..+|||||-|++++++|.+.....| ++.++++..++.+|.++|||.|...+.....+.++.|....|.|..-.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 4699999999999999988887766 7778888899999999999999999999999999999999888854333
No 96
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.13 E-value=7.3e-06 Score=65.17 Aligned_cols=78 Identities=26% Similarity=0.297 Sum_probs=64.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTE-ATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
+...|-+.+||+.+++++|.++|+..--+.. +.++.+ ..++..|-|||.|++.+.|++|+.. |...|..+-|.|..+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 5567889999999999999999997643333 456666 4588999999999999999999985 777788888998776
Q ss_pred c
Q 036791 135 R 135 (157)
Q Consensus 135 ~ 135 (157)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.05 E-value=1.4e-05 Score=61.05 Aligned_cols=78 Identities=24% Similarity=0.400 Sum_probs=61.2
Q ss_pred EEEEcCCCCCCCHHH------HHHHHhcCCCeeEEEEeecCCC-CCcce--EEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 036791 59 FWRCISVSFSTTKEM------LADAFSQFGQVTEATIIMDIGK-NRSKG--YGYVTSSTEEEAQKALVDMNGKLLDGRVI 129 (157)
Q Consensus 59 ~l~V~nl~~~~~~~~------l~~~f~~~G~i~~~~~~~~~~~-~~~~g--~afv~f~~~~~a~~ai~~l~g~~~~g~~l 129 (157)
-+||-+|++.+..++ -.++|.+||.|..+.+.+.... .-..+ ..||+|.+.++|.++|...+|..++|+-|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 489999999887665 3688999999999877543211 11112 24999999999999999999999999999
Q ss_pred EEEeecC
Q 036791 130 FVDNVRP 136 (157)
Q Consensus 130 ~v~~~~~ 136 (157)
+..|...
T Consensus 196 katYGTT 202 (480)
T COG5175 196 KATYGTT 202 (480)
T ss_pred eeecCch
Confidence 9988754
No 98
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.98 E-value=2e-05 Score=51.22 Aligned_cols=69 Identities=29% Similarity=0.392 Sum_probs=42.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-----ccCCcEEEEEe
Q 036791 59 FWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGK-----LLDGRVIFVDN 133 (157)
Q Consensus 59 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~-----~~~g~~l~v~~ 133 (157)
.|.|.+++..++.++|++.|+.||.|..|.+...- .-|+|.|.+.+.|+.|+..+... .+.+..+.++.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 47788899999999999999999999998876542 35899999999999998876544 35555555543
No 99
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.88 E-value=1.7e-05 Score=57.51 Aligned_cols=72 Identities=28% Similarity=0.378 Sum_probs=61.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
...+.|.+++..+.+.+|...|..+|.+....+ ..+++||.|...+++.+|+..|++..+.++.|++.....
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~~ 170 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNSR 170 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecccCc
Confidence 356888999999999999999999998844322 356899999999999999999999999999999955543
No 100
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.84 E-value=0.00015 Score=55.60 Aligned_cols=125 Identities=20% Similarity=0.245 Sum_probs=82.7
Q ss_pred HHHHhccccccCcccccccCCceeceecccccc--------------------cCCCcchhhccccccEEEEcCCC----
Q 036791 11 KIQQFNSYFTEDSLLSFSSKPYQVVNYFSLHCI--------------------VRPSSDLIMQLVNVSFWRCISVS---- 66 (157)
Q Consensus 11 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~l~V~nl~---- 66 (157)
|+.-|++..+.+..+++.-..+..-.-...+.- -+|..+........++|.+.|+=
T Consensus 199 A~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~ 278 (382)
T KOG1548|consen 199 AIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPED 278 (382)
T ss_pred HHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHH
Confidence 555577777777777765433322111111110 01222233344455778888762
Q ss_pred CCCC-------HHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCCCC
Q 036791 67 FSTT-------KEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSRR 139 (157)
Q Consensus 67 ~~~~-------~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~~~ 139 (157)
...+ .++|++-..+||.+..|.+. + ..+.|.+-|.|.+.++|..+|..|+|..+.|+.|.......+..
T Consensus 279 ~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 279 FEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTK 354 (382)
T ss_pred hccCHHHHHHHHHHHHHHHHHhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcce
Confidence 1222 35677888999999998663 2 34568899999999999999999999999999999988765543
No 101
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.83 E-value=0.00015 Score=56.23 Aligned_cols=97 Identities=20% Similarity=0.309 Sum_probs=70.8
Q ss_pred eeceecccccccCCCcchhhccccccE--EEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHH
Q 036791 33 QVVNYFSLHCIVRPSSDLIMQLVNVSF--WRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEE 110 (157)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~ 110 (157)
++.+++...+..++..+.. ...+- +-|-|--..++.+.|..+.-..|.+.+|.|.+. + --.|.|+|.+.+
T Consensus 99 Al~NyStsq~i~R~g~es~---~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~ 170 (494)
T KOG1456|consen 99 ALFNYSTSQCIERPGDESA---TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVE 170 (494)
T ss_pred hhcccchhhhhccCCCCCC---CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhH
Confidence 4455555555666653322 22222 234465667888999999999999999977653 3 346999999999
Q ss_pred HHHHHHHHhCCCccCC--cEEEEEeecCC
Q 036791 111 EAQKALVDMNGKLLDG--RVIFVDNVRPS 137 (157)
Q Consensus 111 ~a~~ai~~l~g~~~~g--~~l~v~~~~~~ 137 (157)
.|++|..+|||..|+. -+|+|+|++|.
T Consensus 171 ~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 171 VAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred HHHHHHhhcccccccccceeEEEEecCcc
Confidence 9999999999999864 56888888774
No 102
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.81 E-value=2.6e-05 Score=57.46 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=61.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC--------CCcc----eEEEEEeCCHHHHHHHHHHhCCCc
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGK--------NRSK----GYGYVTSSTEEEAQKALVDMNGKL 123 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~--------~~~~----g~afv~f~~~~~a~~ai~~l~g~~ 123 (157)
+..-||+++||+.+...-|+++|+.||.|-+|.+-....+ |.++ .-|+|+|.+...|......||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5567999999999999999999999999999988654433 2222 346799999999999999999999
Q ss_pred cCCcE
Q 036791 124 LDGRV 128 (157)
Q Consensus 124 ~~g~~ 128 (157)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98863
No 103
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00011 Score=59.75 Aligned_cols=76 Identities=26% Similarity=0.375 Sum_probs=62.6
Q ss_pred cEEEEcCCCCCCCH------HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC-CcEEE
Q 036791 58 SFWRCISVSFSTTK------EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD-GRVIF 130 (157)
Q Consensus 58 ~~l~V~nl~~~~~~------~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~-g~~l~ 130 (157)
.-|+|.|+|---.. .-|..+|+++|.+....++.+.. |..+||.|++|.+..+|+.|++.|||..|+ +++..
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 45788888764332 35788999999999999998855 559999999999999999999999999975 67787
Q ss_pred EEee
Q 036791 131 VDNV 134 (157)
Q Consensus 131 v~~~ 134 (157)
|...
T Consensus 138 v~~f 141 (698)
T KOG2314|consen 138 VRLF 141 (698)
T ss_pred eehh
Confidence 7654
No 104
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.66 E-value=0.00019 Score=58.10 Aligned_cols=66 Identities=18% Similarity=0.304 Sum_probs=54.7
Q ss_pred HHHHHHHhcCCCeeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCC
Q 036791 72 EMLADAFSQFGQVTEATIIMDIGK---NRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPS 137 (157)
Q Consensus 72 ~~l~~~f~~~G~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~ 137 (157)
++++.-+++||.|..|.++.+-.. .-+.|--||+|.+.+++++|+.+|+|..+.|+.+...|..+.
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 356777888999999998876222 234577899999999999999999999999999999987653
No 105
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.61 E-value=0.00027 Score=58.79 Aligned_cols=75 Identities=21% Similarity=0.355 Sum_probs=64.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCee-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVT-EATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 133 (157)
+-|-|.|+|++++-+|+-++|..|-.+- +|.+-++ +.|+..|-|-|.|++.++|.+|...|++..|.++.+.+.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3577899999999999999999996443 3444443 6699999999999999999999999999999999998864
No 106
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.55 E-value=0.0018 Score=45.88 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=56.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD 125 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~ 125 (157)
....+.|.+||++-+|.+|+.+..+-|+++...+.+| |++.|+|...++.+-|+..|+...+.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 3456889999999999999999999999999988877 47999999999999999999888753
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.0004 Score=55.86 Aligned_cols=64 Identities=27% Similarity=0.106 Sum_probs=58.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHh-cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFS-QFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~ 118 (157)
...+|||||+||.-++..+|-.+|. -||.|..+.|-.|++-+..+|-|-|+|.+....-+||.+
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4557999999999999999999998 799999999999987788999999999999999999975
No 108
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.47 E-value=0.00028 Score=55.31 Aligned_cols=74 Identities=15% Similarity=0.091 Sum_probs=58.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
-.+.|+++-.-++-+.|+.+|++||.+.++.-.. +.+ .--|.|.|.+.+.|+.|..+|+|..|.+-.+.++..-
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~-Knn---~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~ 224 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFT-KNN---GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDF 224 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEe-ccc---chhhhhhccchhhHHHHHHhccCCcccCceeEEEeeh
Confidence 3577899999999999999999999998874322 122 2247899999999999999999999987665555543
No 109
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.43 E-value=0.00035 Score=59.50 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=68.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC--cEEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG--RVIFVD 132 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g--~~l~v~ 132 (157)
...+.+++++|..++....|...|..||.|..|.+ .+..-|++|.|++...++.|++.|-|..|+| ++++|.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy------~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY------RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeec------ccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 34467999999999999999999999999998765 3345799999999999999999999999976 779999
Q ss_pred eecCCCCC
Q 036791 133 NVRPSRRY 140 (157)
Q Consensus 133 ~~~~~~~~ 140 (157)
++.+....
T Consensus 527 la~~~~~~ 534 (975)
T KOG0112|consen 527 LASPPGAT 534 (975)
T ss_pred cccCCCCC
Confidence 98765443
No 110
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.43 E-value=0.00051 Score=38.92 Aligned_cols=51 Identities=20% Similarity=0.391 Sum_probs=40.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 036791 59 FWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKAL 116 (157)
Q Consensus 59 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai 116 (157)
.|-|.+.+....+.. ...|..||+|....+.. ...+.++.|.+..+|++|+
T Consensus 3 wI~V~Gf~~~~~~~v-l~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLAEEV-LEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHHHHH-HHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 466888887776554 45888999999987752 2457999999999999985
No 111
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.41 E-value=0.00013 Score=61.61 Aligned_cols=79 Identities=22% Similarity=0.148 Sum_probs=66.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
...++|.|.|+..|.+.++.++.++|.+..+.++.. ..|+.+|.++|.|.+..++.++....+...+.-..+.|..+.|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 456999999999999999999999999999988777 4599999999999999999999887777666655566666443
No 112
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.38 E-value=0.0012 Score=45.06 Aligned_cols=59 Identities=25% Similarity=0.355 Sum_probs=45.4
Q ss_pred HHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCCCCC
Q 036791 73 MLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSRRY 140 (157)
Q Consensus 73 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~~~~ 140 (157)
+|-+.|..||.+.-++++-+ .-+|+|.+-+.|.+|+. ++|..++|+.|+|+...|.+-.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW~~ 110 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDWLK 110 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-------
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccHHH
Confidence 67788889999888887765 27999999999999998 7999999999999999886543
No 113
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.17 E-value=0.0029 Score=39.08 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=41.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 036791 59 FWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNG 121 (157)
Q Consensus 59 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g 121 (157)
-.||. +|..|...||.++|+.||.| .|.++.|. -|||...+.+.+..++..+..
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 35555 99999999999999999986 67777762 499999999999999998863
No 114
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.11 E-value=0.00035 Score=55.09 Aligned_cols=77 Identities=21% Similarity=0.292 Sum_probs=61.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCC-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc-cCCcEEEEEeecC
Q 036791 59 FWRCISVSFSTTKEMLADAFSQFGQ-VTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL-LDGRVIFVDNVRP 136 (157)
Q Consensus 59 ~l~V~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~-~~g~~l~v~~~~~ 136 (157)
++|++||.+.++..+|+.+|...-- ...-.++ ..||+||.+.+..-|.+|++.++|.. +.|.++.+...-+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 5899999999999999999975411 1111111 24899999999999999999999986 8999999999887
Q ss_pred CCCCCC
Q 036791 137 SRRYNT 142 (157)
Q Consensus 137 ~~~~~~ 142 (157)
+..+.+
T Consensus 76 kkqrsr 81 (584)
T KOG2193|consen 76 KKQRSR 81 (584)
T ss_pred HHHHhh
Confidence 765443
No 115
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.06 E-value=0.0055 Score=47.85 Aligned_cols=75 Identities=15% Similarity=0.168 Sum_probs=65.0
Q ss_pred ccEEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 57 VSFWRCISVSFS-TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 57 ~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..-+.|-+|... ++.+.|..+|-.||.|.+|.+++.+ .|-|.|++-+..+.++|+..||+..+-|.+|.|..++
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 356778888765 5568899999999999999998874 3679999999999999999999999999999998875
Q ss_pred C
Q 036791 136 P 136 (157)
Q Consensus 136 ~ 136 (157)
-
T Consensus 362 Q 362 (494)
T KOG1456|consen 362 Q 362 (494)
T ss_pred c
Confidence 4
No 116
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.05 E-value=0.0043 Score=39.87 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=49.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecC-------CCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCc-EE
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDI-------GKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR-VI 129 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~-------~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~-~l 129 (157)
.-|.|-+.|+... ..+-+.|++||.|.+..-.... .......+-.|.|.++.+|.+||.. ||..+.|. .+
T Consensus 7 ~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEEE
T ss_pred eEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEE
Confidence 4477888998854 6677789999999776411000 0012356889999999999999995 99999885 44
Q ss_pred EEEeec
Q 036791 130 FVDNVR 135 (157)
Q Consensus 130 ~v~~~~ 135 (157)
-|.+.+
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 566664
No 117
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0037 Score=50.46 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=47.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC-CC--Ccce---EEEEEeCCHHHHHHHHHHh
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIG-KN--RSKG---YGYVTSSTEEEAQKALVDM 119 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-~~--~~~g---~afv~f~~~~~a~~ai~~l 119 (157)
.+||||+||++++|+.|...|..||.+ .+.++.... .+ -.+| |.|+.|+++..+..-+.+.
T Consensus 260 ~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 260 RKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 579999999999999999999999974 555653111 11 2456 9999999998888776653
No 118
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.98 E-value=0.0014 Score=51.77 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=56.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeec---CCCCC----------cceEEEEEeCCHHHHHHHHHHhCC
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMD---IGKNR----------SKGYGYVTSSTEEEAQKALVDMNG 121 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~---~~~~~----------~~g~afv~f~~~~~a~~ai~~l~g 121 (157)
.+.++|.+-|||.+-.-+.|.++|..+|.|..|+|... +.+.+ .+-+|+|+|...+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 46688999999999988999999999999999999776 33322 256899999999999999998754
Q ss_pred C
Q 036791 122 K 122 (157)
Q Consensus 122 ~ 122 (157)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 119
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.91 E-value=0.0018 Score=50.61 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=64.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCC-CeeE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFG-QVTE--ATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~--~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
..|.+++||+..+.++|-.+|..|. .|.. +.++.+ ..|+..|-|||.|.+.+.|.+|...-+......+.|.|--+
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 3588899999999999999999885 3443 677776 55889999999999999999999887777777898988776
Q ss_pred c
Q 036791 135 R 135 (157)
Q Consensus 135 ~ 135 (157)
.
T Consensus 360 S 360 (508)
T KOG1365|consen 360 S 360 (508)
T ss_pred c
Confidence 4
No 120
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.86 E-value=0.0097 Score=34.74 Aligned_cols=53 Identities=23% Similarity=0.175 Sum_probs=43.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 036791 59 FWRCISVSFSTTKEMLADAFSQF---GQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDM 119 (157)
Q Consensus 59 ~l~V~nl~~~~~~~~l~~~f~~~---G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l 119 (157)
.|+|.++.. ++.++++.+|..| ....++.++-|.. |-|.|.+.+.|.+|+.+|
T Consensus 7 avhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDtS-------cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDTS-------CNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCCc-------EEEEECCHHHHHHHHHcC
Confidence 588999854 6668899999988 2457899998832 899999999999999764
No 121
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.84 E-value=0.0052 Score=46.53 Aligned_cols=65 Identities=23% Similarity=0.297 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCCeeEEEEeecCCCCCc-ceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 71 KEMLADAFSQFGQVTEATIIMDIGKNRS-KGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 71 ~~~l~~~f~~~G~i~~~~~~~~~~~~~~-~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
++++++.+.+||.+..|.|...+..-.. .---||+|...+.|-+|+-.|||..++|+.++..+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 3567888999999999988776544332 2447999999999999999999999999998887653
No 122
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.70 E-value=0.0025 Score=47.21 Aligned_cols=62 Identities=19% Similarity=0.328 Sum_probs=55.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMN 120 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~ 120 (157)
..|||.||+..++.+.+.+-|+.||+|....+..| ..++..+-++|.|.+.-.+.+|+....
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 56999999999999999999999999988766666 668888999999999999999998764
No 123
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.69 E-value=0.00097 Score=49.30 Aligned_cols=62 Identities=24% Similarity=0.423 Sum_probs=49.1
Q ss_pred HHHHHHh-cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 73 MLADAFS-QFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 73 ~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
++...|. +||+|..+.+-.+. .-...|-.+|.|...++|++|+..||+.-+.|++|...+..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3444444 89999988554432 23456889999999999999999999999999999998864
No 124
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.62 E-value=0.0026 Score=49.73 Aligned_cols=75 Identities=21% Similarity=0.227 Sum_probs=57.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhc----CCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQ----FGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~----~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 132 (157)
.-.|..++||+++++.++.++|.. -|....+.++.. -+|+..|=|||.|..+++|+.|+.. |...++.|.|.+.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 345777899999999999999963 134455655554 4589999999999999999999986 6666666666553
Q ss_pred e
Q 036791 133 N 133 (157)
Q Consensus 133 ~ 133 (157)
.
T Consensus 239 R 239 (508)
T KOG1365|consen 239 R 239 (508)
T ss_pred H
Confidence 3
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.61 E-value=0.00011 Score=62.04 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=62.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 133 (157)
.++||.||+..+.+.+|...|..+|.+..+++.-...+++.+|+|++.|...+.+.+|+....+..+....+.|+-
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g 743 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISG 743 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeC
Confidence 4789999999999999999999999888877766667789999999999999999999987665555544444433
No 126
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.61 E-value=0.0022 Score=52.63 Aligned_cols=74 Identities=22% Similarity=0.200 Sum_probs=60.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhc-CCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc---CCcEEEE
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQ-FGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL---DGRVIFV 131 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~---~g~~l~v 131 (157)
....|||.||-.-.|..+|+.++.+ .|.|... |+ | +-+..|||.|.+.++|.+...+|||..+ +++.|.+
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 3456999999999999999999985 5555554 32 2 3456799999999999999999999985 5688988
Q ss_pred Eeec
Q 036791 132 DNVR 135 (157)
Q Consensus 132 ~~~~ 135 (157)
.|..
T Consensus 517 df~~ 520 (718)
T KOG2416|consen 517 DFVR 520 (718)
T ss_pred eecc
Confidence 8874
No 127
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.36 E-value=0.0011 Score=56.49 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=67.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
..+||+|||+..+++.+|+..|..+|.+..|.|-..+- +...-|+||.|.+...+..|+-.+.+..|....+++.+..+
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~ 450 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP 450 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccccccc
Confidence 46899999999999999999999999999998855422 34456899999999999999999999998777777777754
No 128
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.01 E-value=0.0043 Score=51.94 Aligned_cols=76 Identities=12% Similarity=0.020 Sum_probs=62.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTE-ATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.-|||..||..+++.++..+|.....|++ |.|.+. -+++.++.|||.|..++++..|...-+...++.+.|+|+-.
T Consensus 435 ~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 435 GALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 46999999999999999999998777776 555554 45788899999999988888888766667778888998754
No 129
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.92 E-value=0.0032 Score=48.29 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=60.8
Q ss_pred cEEEEcCCCCCCCHHHH---HHHHhcCCCeeEEEEeecCC--CCC-cceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q 036791 58 SFWRCISVSFSTTKEML---ADAFSQFGQVTEATIIMDIG--KNR-SKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l---~~~f~~~G~i~~~~~~~~~~--~~~-~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v 131 (157)
..+||.+|+..+.++.+ .+.|.+||.|..+....++. .+. ...-++|+|...++|..+|...+|..+.|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 34788889888766543 46788899999988877652 111 1223799999999999999999999999998887
Q ss_pred EeecCC
Q 036791 132 DNVRPS 137 (157)
Q Consensus 132 ~~~~~~ 137 (157)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776654
No 130
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.91 E-value=0.013 Score=46.06 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=58.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 59 FWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGK---NRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 59 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
-|-|.||.+..+.+++..+|...|.|..+.|...... ....-.|||.|.+...+..|...-|-..|+--.|.+-|..
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~ 88 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGD 88 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCC
Confidence 5889999999999999999999999999988653322 2345689999999999999988554444444444444443
No 131
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.44 E-value=0.11 Score=35.41 Aligned_cols=72 Identities=15% Similarity=0.099 Sum_probs=51.9
Q ss_pred cccEEEEcCCCCCCCH-HH---HHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q 036791 56 NVSFWRCISVSFSTTK-EM---LADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~-~~---l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v 131 (157)
+-.+|-|.=|..++.. +| +...++.||.|..+... ++.-|.|.|.+...|-+|+.+++. ..-|..+.+
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 3467878766655543 34 45556789999998653 234599999999999999999865 556777777
Q ss_pred Eeec
Q 036791 132 DNVR 135 (157)
Q Consensus 132 ~~~~ 135 (157)
.|-.
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 7643
No 132
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.31 E-value=0.054 Score=38.73 Aligned_cols=61 Identities=20% Similarity=0.212 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CCccCCcEEEEEeecCC
Q 036791 71 KEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMN--GKLLDGRVIFVDNVRPS 137 (157)
Q Consensus 71 ~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~--g~~~~g~~l~v~~~~~~ 137 (157)
...|+++|..++.+.....++.. +-..|.|.+.+.|.+|...|+ +..++|..+++-++.+.
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 47799999999988877666542 348899999999999999999 89999999999988543
No 133
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.09 E-value=0.55 Score=30.71 Aligned_cols=75 Identities=20% Similarity=0.196 Sum_probs=51.8
Q ss_pred cEEEE-cCCCCCCCHHHHHHHHhcC-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC---CcEEEEE
Q 036791 58 SFWRC-ISVSFSTTKEMLADAFSQF-GQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD---GRVIFVD 132 (157)
Q Consensus 58 ~~l~V-~nl~~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~---g~~l~v~ 132 (157)
..+.| ...|..++.++|..+.+.+ ..|..++++++. ..++-.+.+.|.+.++|..-.+.+||..++ ...++|-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chvv 90 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVV 90 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEE
Confidence 33444 4445555556676555554 467788888872 336777889999999999999999999864 3445554
Q ss_pred ee
Q 036791 133 NV 134 (157)
Q Consensus 133 ~~ 134 (157)
+.
T Consensus 91 fV 92 (110)
T PF07576_consen 91 FV 92 (110)
T ss_pred EE
Confidence 43
No 134
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.81 E-value=0.07 Score=43.68 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=56.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHh-cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc---C-CcEEEEEe
Q 036791 59 FWRCISVSFSTTKEMLADAFS-QFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL---D-GRVIFVDN 133 (157)
Q Consensus 59 ~l~V~nl~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~---~-g~~l~v~~ 133 (157)
++.|.|++-..|...|...-. ..|.-..+.++.|-.+..+.|||||.|.+.+++....+++||+.. + .+.+.+.|
T Consensus 390 t~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itY 469 (549)
T KOG4660|consen 390 TLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITY 469 (549)
T ss_pred hhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeeh
Confidence 344555555544444433322 256667788888888888999999999999999999999999974 3 35677777
Q ss_pred ecC
Q 036791 134 VRP 136 (157)
Q Consensus 134 ~~~ 136 (157)
++-
T Consensus 470 ArI 472 (549)
T KOG4660|consen 470 ARI 472 (549)
T ss_pred hhh
Confidence 764
No 135
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.81 E-value=0.019 Score=46.17 Aligned_cols=72 Identities=25% Similarity=0.266 Sum_probs=56.6
Q ss_pred EEEcCCCCCCCH-HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCCC
Q 036791 60 WRCISVSFSTTK-EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSR 138 (157)
Q Consensus 60 l~V~nl~~~~~~-~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~~ 138 (157)
|-+...++.... ++|...|.+||.|..|.+-.. --.|.|+|.+..+|-.|-. .++..|+|+.|+|.|-.+..
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 444445555544 889999999999999987554 2358999999999966655 48999999999999988744
No 136
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.54 E-value=0.063 Score=38.10 Aligned_cols=79 Identities=9% Similarity=-0.045 Sum_probs=49.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhc-CCCe---eEEEEeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCCccCC----
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQ-FGQV---TEATIIMDIGK--NRSKGYGYVTSSTEEEAQKALVDMNGKLLDG---- 126 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~-~G~i---~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g---- 126 (157)
..+|-|++||++++++++.+.+.. +++. ..+.-..+... .....-|+|.|.+.+++..-...++|..+-+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 357899999999999998886665 5544 33331222111 1234679999999999999999999987632
Q ss_pred -cEEEEEeec
Q 036791 127 -RVIFVDNVR 135 (157)
Q Consensus 127 -~~l~v~~~~ 135 (157)
....|.+|.
T Consensus 87 ~~~~~VE~Ap 96 (176)
T PF03467_consen 87 EYPAVVEFAP 96 (176)
T ss_dssp EEEEEEEE-S
T ss_pred CcceeEEEcc
Confidence 355666664
No 137
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.10 E-value=0.56 Score=28.20 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHhcCC-----CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 66 SFSTTKEMLADAFSQFG-----QVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 66 ~~~~~~~~l~~~f~~~G-----~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
-..++..+|-.++...+ +|-.+.+... |+||+-.. +.++.++..|++..+.|++++|+.|
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 44577888888887664 4445665443 68888864 4788999999999999999999864
No 138
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.81 E-value=0.052 Score=45.32 Aligned_cols=79 Identities=11% Similarity=0.083 Sum_probs=63.9
Q ss_pred CCcchhhccccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC
Q 036791 46 PSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD 125 (157)
Q Consensus 46 ~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~ 125 (157)
|.........+..++||+|+...+..+-++.+...+|.|..+.... |||..|..+.....|+..+....++
T Consensus 29 p~qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 29 PIQPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred CCcccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCC
Confidence 3334444445667899999999999999999999999886654332 7999999999999999999988898
Q ss_pred CcEEEEEe
Q 036791 126 GRVIFVDN 133 (157)
Q Consensus 126 g~~l~v~~ 133 (157)
|..+.+..
T Consensus 100 ~~kl~~~~ 107 (668)
T KOG2253|consen 100 DQKLIENV 107 (668)
T ss_pred cchhhccc
Confidence 88776655
No 139
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.25 E-value=0.38 Score=36.80 Aligned_cols=66 Identities=24% Similarity=0.350 Sum_probs=48.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCc-EEEEEe
Q 036791 60 WRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR-VIFVDN 133 (157)
Q Consensus 60 l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~-~l~v~~ 133 (157)
|-|-++|+.-. ..+-.+|++||.|.+... +.+..+-+|.|.+..+|++||.. +|..|+|. .|-|..
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKP 266 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeee
Confidence 44556766654 456678999999876532 33446889999999999999985 89999874 344544
No 140
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.76 E-value=0.93 Score=26.79 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q 036791 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131 (157)
Q Consensus 68 ~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v 131 (157)
.++-.+++..+.+|+ ..++. .+ .+| -||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~--~d-~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIR--DD-RTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEE--ec-CCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 456689999999995 44544 33 222 489999999999999999999888777654
No 141
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=91.92 E-value=0.087 Score=40.29 Aligned_cols=80 Identities=20% Similarity=-0.007 Sum_probs=63.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
...++|++++.+.+.+.....++..+|................+|++.+.|...+.+..++.......+.+..+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 35679999999999999888888899987777666655678899999999999999999998654445666555554443
No 142
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.81 E-value=0.42 Score=39.52 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=48.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhc--CCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC--ccCCcEEE
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQ--FGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGK--LLDGRVIF 130 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~--~~~g~~l~ 130 (157)
+.+.++-||..+..++++.+|.. +-.+..|.+-.+- -=||+|++..||+.|.+.|... .|.|++|.
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 56778999999999999999975 6677777665431 1599999999999998766422 24444443
No 143
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.35 E-value=0.21 Score=43.18 Aligned_cols=77 Identities=25% Similarity=0.219 Sum_probs=63.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc--CCcEEEEEeecC
Q 036791 59 FWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL--DGRVIFVDNVRP 136 (157)
Q Consensus 59 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~--~g~~l~v~~~~~ 136 (157)
+.++.|.+-..+...|..+|++||.+.....+++. ..+.|.|.+.+.|-.|+.+|+|.++ -|-+.+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 34455667778888999999999999988776663 3699999999999999999999985 578899999987
Q ss_pred CCCCC
Q 036791 137 SRRYN 141 (157)
Q Consensus 137 ~~~~~ 141 (157)
-+-+.
T Consensus 374 ~~~~e 378 (1007)
T KOG4574|consen 374 LPMYE 378 (1007)
T ss_pred ccccc
Confidence 55443
No 144
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=91.14 E-value=0.097 Score=38.27 Aligned_cols=74 Identities=26% Similarity=0.312 Sum_probs=60.7
Q ss_pred cEEEEcC----CCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 036791 58 SFWRCIS----VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132 (157)
Q Consensus 58 ~~l~V~n----l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 132 (157)
.+++.|+ |...++++.+...|+.-|.+..+++..+.+ |+++.++|+++.-....-.++..+++..+--+++.+.
T Consensus 81 ~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~g 158 (267)
T KOG4454|consen 81 RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTIG 158 (267)
T ss_pred cccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCcCCCCcccc
Confidence 4677888 888999999999999999999999988844 8899999999998888888888877766544444443
No 145
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=86.84 E-value=2 Score=31.19 Aligned_cols=105 Identities=18% Similarity=0.166 Sum_probs=61.1
Q ss_pred HHHHHHHhccccccCcccccccCCc--eeceeccc--cc--ccCCCcchhhccccccEEEEcCCCCCCCHHHHHHHHhcC
Q 036791 8 QTRKIQQFNSYFTEDSLLSFSSKPY--QVVNYFSL--HC--IVRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQF 81 (157)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~--~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~ 81 (157)
-..|++.+++..+.++.+.+..... ........ .. .................+++++++..+....+...|..+
T Consensus 170 ~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (306)
T COG0724 170 AEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSR 249 (306)
T ss_pred HHHHHHHcCCCeECCceeEeeccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcccc
Confidence 4678888999999999887665221 00000000 00 001111112222344679999999999999999999999
Q ss_pred CCeeEEEEeecCCCCCcceEEEEEeCCHHHH
Q 036791 82 GQVTEATIIMDIGKNRSKGYGYVTSSTEEEA 112 (157)
Q Consensus 82 G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a 112 (157)
|.+....+.............++.+.....+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (306)
T COG0724 250 GDIVRASLPPSKDGKIPKSRSFVGNEASKDA 280 (306)
T ss_pred ccceeeeccCCCCCcccccccccchhHHHhh
Confidence 9997776655533333333444443333333
No 146
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.48 E-value=5.4 Score=32.42 Aligned_cols=68 Identities=16% Similarity=0.197 Sum_probs=56.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcC-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQF-GQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG 126 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g 126 (157)
...|+|-.+|-.++-.||-.+...+ -.|..+++++|. --++=...+.|.+..+|..-.+.+||..+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 6679999999999999998888765 578899999862 2345567899999999999999999998753
No 147
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=86.47 E-value=3.1 Score=31.85 Aligned_cols=46 Identities=7% Similarity=-0.018 Sum_probs=35.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCe-eEEEEeecCCCCCcceEEEEEeCCH
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQV-TEATIIMDIGKNRSKGYGYVTSSTE 109 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i-~~~~~~~~~~~~~~~g~afv~f~~~ 109 (157)
+.||++||+.++.-.+|+..+.+.+.. .++.| .-+.|-||+.|-+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 569999999999999999999988633 34444 23456699999654
No 148
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=79.82 E-value=5.6 Score=23.55 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=44.2
Q ss_pred HHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCCC
Q 036791 72 EMLADAFSQFG-QVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSR 138 (157)
Q Consensus 72 ~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~~ 138 (157)
+++++-|...| .+..+.-+..+.+......-||+.....+ ..+.++-..+++..++|+..+.+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCCCCC
Confidence 35666677666 67777777776666667778888765544 334566677889888888776543
No 149
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=77.68 E-value=0.075 Score=42.40 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=60.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATII-MDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.++-|.|+|+-..++.|..+...||.+..|..+ .+..+ -..-|+|...+.+..||..++|..+++..+++.|-
T Consensus 81 rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 81 RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 458899999999999999999999999887543 33332 12346788999999999999999999999999884
No 150
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=75.40 E-value=6.8 Score=27.95 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=47.0
Q ss_pred EEEcCCCCCCCH-----HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCc-EEEEEe
Q 036791 60 WRCISVSFSTTK-----EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR-VIFVDN 133 (157)
Q Consensus 60 l~V~nl~~~~~~-----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~-~l~v~~ 133 (157)
+.+-++...+-. .....+|..|.+....++++ +.+.--|.|.+.+.|..|...+++..+.|. .++.-+
T Consensus 13 ~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 13 IIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred eeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 444455544322 23456666665444433332 233456789999999999999999999887 777766
Q ss_pred ecCCC
Q 036791 134 VRPSR 138 (157)
Q Consensus 134 ~~~~~ 138 (157)
+.+..
T Consensus 87 aQ~~~ 91 (193)
T KOG4019|consen 87 AQPGH 91 (193)
T ss_pred ccCCC
Confidence 66543
No 151
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=75.19 E-value=7.3 Score=23.19 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=42.2
Q ss_pred HHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCC
Q 036791 72 EMLADAFSQFG-QVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPS 137 (157)
Q Consensus 72 ~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~ 137 (157)
+.+++-|.+.| ++..+..+..+.+......-+|+.....+-.. .|+-..|+|.++.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 35677788887 66777777776666566677777765433222 46667788998888765543
No 152
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=72.34 E-value=0.78 Score=36.44 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=50.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD 125 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~ 125 (157)
.+++|.+|+..+...++-++|..+|.+....+-- +-...+|-+.|..-.....|+.. +|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 5799999999999999999999999988776632 44456777999888888888874 676655
No 153
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.22 E-value=22 Score=29.96 Aligned_cols=77 Identities=14% Similarity=0.184 Sum_probs=56.4
Q ss_pred cccEEEEcCCCCC-CCHHHHHHHHhcC----CCeeEEEEeecCCCCC---------------------------------
Q 036791 56 NVSFWRCISVSFS-TTKEMLADAFSQF----GQVTEATIIMDIGKNR--------------------------------- 97 (157)
Q Consensus 56 ~~~~l~V~nl~~~-~~~~~l~~~f~~~----G~i~~~~~~~~~~~~~--------------------------------- 97 (157)
....|-|-|+.|+ +...+|.-+|..| |.|..|.|.... -|+
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe-FGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE-FGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh-hhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 3457889999997 6668998888765 588888765321 111
Q ss_pred ---------------cceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Q 036791 98 ---------------SKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133 (157)
Q Consensus 98 ---------------~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 133 (157)
..=||.|+|.+.+.|.+.-+..+|..+......+.+
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 123889999999999999999999998655444444
No 154
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=70.12 E-value=15 Score=21.42 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCCeeEEEEee
Q 036791 72 EMLADAFSQFGQVTEATIIM 91 (157)
Q Consensus 72 ~~l~~~f~~~G~i~~~~~~~ 91 (157)
.+|+++|+..|+|.-+.+..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57999999999998776643
No 155
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.05 E-value=19 Score=29.07 Aligned_cols=54 Identities=17% Similarity=0.095 Sum_probs=44.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFG-QVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~ 118 (157)
+-|-|-++|.....+||-..|..|+ .-.+|.|+-+. .+|..|.+...|..|+..
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 4577889999999999999999985 44677887762 699999999999999875
No 156
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=56.90 E-value=45 Score=21.89 Aligned_cols=45 Identities=16% Similarity=0.261 Sum_probs=27.2
Q ss_pred CHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHH
Q 036791 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSS-TEEEAQKALV 117 (157)
Q Consensus 70 ~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~-~~~~a~~ai~ 117 (157)
+.+.|.+.|+.|..+ +++.+.++ .-+.|+++|.|. +-.....|+.
T Consensus 30 ~~~~l~~~l~~f~p~-kv~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAEFNPL-KVKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH---S-EEEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCc-eeEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 447899999999775 46555653 367899999997 4455555554
No 157
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=54.36 E-value=19 Score=27.64 Aligned_cols=35 Identities=23% Similarity=0.134 Sum_probs=25.6
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCCC
Q 036791 102 GYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSR 138 (157)
Q Consensus 102 afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~~ 138 (157)
|||+|.+..+|+.+++.+.... +..+++..|....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc
Confidence 6999999999999998654433 3456777766543
No 158
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=51.31 E-value=39 Score=21.04 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=31.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEe
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTS 106 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f 106 (157)
.-+|||+++..+.+.-...+....++-.-+-+-.+ . . ..||.|-..
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~-~-n-eqG~~~~t~ 71 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD-N-N-EQGFDFRTL 71 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc-C-C-CCCEEEEEe
Confidence 34999999999998877777665554433333322 2 2 678888776
No 159
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=47.75 E-value=41 Score=25.96 Aligned_cols=78 Identities=13% Similarity=0.107 Sum_probs=51.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecC-------CCCCcceEEEEEeCCHHHHHHH----HHHhC--CCcc
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDI-------GKNRSKGYGYVTSSTEEEAQKA----LVDMN--GKLL 124 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~-------~~~~~~g~afv~f~~~~~a~~a----i~~l~--g~~~ 124 (157)
+.|...|+..+++--.+-..|.+||.|+.+.++.+. ...+......+.|-+.+.+..- +..|. ...+
T Consensus 16 RSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~L 95 (309)
T PF10567_consen 16 RSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTKL 95 (309)
T ss_pred HHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHhc
Confidence 347788999888888888889999999999998764 1223345567888777665432 22222 1234
Q ss_pred CCcEEEEEeec
Q 036791 125 DGRVIFVDNVR 135 (157)
Q Consensus 125 ~g~~l~v~~~~ 135 (157)
....|.+.+..
T Consensus 96 ~S~~L~lsFV~ 106 (309)
T PF10567_consen 96 KSESLTLSFVS 106 (309)
T ss_pred CCcceeEEEEE
Confidence 55666666654
No 160
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=41.63 E-value=48 Score=21.16 Aligned_cols=48 Identities=8% Similarity=-0.026 Sum_probs=31.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCC
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSST 108 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~ 108 (157)
.-+|||+++..+.+.-...+-+.+++-.-+ ++.. .+ .-.||.|-.+-.
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~G~av-mv~~-~~-~eqG~~~~t~G~ 75 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEEGNVV-MAWA-TN-TESGFEFQTFGE 75 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCCcEE-EEEc-CC-CCCCcEEEecCC
Confidence 349999999999887666666666553333 3332 22 334899888753
No 161
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=39.39 E-value=4.4 Score=33.80 Aligned_cols=68 Identities=9% Similarity=-0.029 Sum_probs=48.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD 125 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~ 125 (157)
.++++.|++++++-++|+.++..+.-..++.+..+..-.+..-+++|.|.---...-|+.+||+.-+.
T Consensus 232 ~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 232 CSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 56899999999999999999998865665544333222234456788887666667777777776543
No 162
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=38.91 E-value=47 Score=19.43 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=23.5
Q ss_pred CHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEE
Q 036791 70 TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYV 104 (157)
Q Consensus 70 ~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv 104 (157)
-+.+|+..|-+-..|..+.+...+.-++ |-|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKri~~--G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKRIRK--GAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEeeeC--CceeE
Confidence 4567888888888999998887654444 44554
No 163
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.35 E-value=6.2 Score=32.08 Aligned_cols=76 Identities=3% Similarity=-0.184 Sum_probs=55.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 60 WRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 60 l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
.|+..++-..++.++.-+|..||-|..+.+.+.-..+.....+|+.... .++..+|..+--..+.|..+++..+..
T Consensus 6 ~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 6 KSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 5677888899999999999999998887765544446667778887654 455666665555667777787777643
No 164
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=36.22 E-value=33 Score=28.69 Aligned_cols=41 Identities=29% Similarity=0.322 Sum_probs=35.4
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCCC
Q 036791 98 SKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSR 138 (157)
Q Consensus 98 ~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~~ 138 (157)
...|+++.|++...+.+|+..++|....+..+++.......
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~ 102 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEV 102 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccc
Confidence 35789999999999999999999999999888888776543
No 165
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.41 E-value=95 Score=25.80 Aligned_cols=58 Identities=16% Similarity=0.046 Sum_probs=43.3
Q ss_pred EcCCCCCCCH---HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 036791 62 CISVSFSTTK---EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129 (157)
Q Consensus 62 V~nl~~~~~~---~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l 129 (157)
||||..-... ..+.++-.+||.|..+.+-.. -.|...+.+.|+.++.. ++..+.+|+.
T Consensus 37 IGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 37 IGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred cccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 7777654433 456666668999997776433 47888899999999986 7888888875
No 166
>PRK11901 hypothetical protein; Reviewed
Probab=34.48 E-value=1.1e+02 Score=23.96 Aligned_cols=62 Identities=8% Similarity=0.045 Sum_probs=38.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcc-eEEEEEeCCHHHHHHHHHHhCCCc
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSK-GYGYVTSSTEEEAQKALVDMNGKL 123 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~-g~afv~f~~~~~a~~ai~~l~g~~ 123 (157)
++|-+.. ...++.|..+..+++ +..+.+.....+|+.- ..-+-.|.+.++|..|+..|....
T Consensus 246 YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 246 YTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred eEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 4554544 456778888887775 3445544443334321 223447899999999999986443
No 167
>PF15063 TC1: Thyroid cancer protein 1
Probab=31.72 E-value=31 Score=20.89 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=21.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCee
Q 036791 60 WRCISVSFSTTKEMLADAFSQFGQVT 85 (157)
Q Consensus 60 l~V~nl~~~~~~~~l~~~f~~~G~i~ 85 (157)
--+.||=.+++...|..+|..-|+..
T Consensus 28 kasaNIFe~vn~~qlqrLF~~sGD~k 53 (79)
T PF15063_consen 28 KASANIFENVNLDQLQRLFQKSGDKK 53 (79)
T ss_pred hhhhhhhhccCHHHHHHHHHHccchh
Confidence 33778889999999999999999653
No 168
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=31.09 E-value=52 Score=25.32 Aligned_cols=67 Identities=18% Similarity=0.341 Sum_probs=41.0
Q ss_pred cEEEEcCCCCC------------CCHHHHHHHHhcCCCeeEEEEee-----cCCCCCcc-----eEEE---------EEe
Q 036791 58 SFWRCISVSFS------------TTKEMLADAFSQFGQVTEATIIM-----DIGKNRSK-----GYGY---------VTS 106 (157)
Q Consensus 58 ~~l~V~nl~~~------------~~~~~l~~~f~~~G~i~~~~~~~-----~~~~~~~~-----g~af---------v~f 106 (157)
.+||+.+||-. .+++-|+..|..||.|..+.|+. ..-+|+.. ||+| |.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 46777777632 45678999999999999887753 22334443 3433 333
Q ss_pred CCHHHHHHHHHHhCCCcc
Q 036791 107 STEEEAQKALVDMNGKLL 124 (157)
Q Consensus 107 ~~~~~a~~ai~~l~g~~~ 124 (157)
........|+.+|-|..+
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 333445556666666654
No 169
>PRK10905 cell division protein DamX; Validated
Probab=30.32 E-value=1.5e+02 Score=23.38 Aligned_cols=61 Identities=11% Similarity=-0.011 Sum_probs=36.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCC-cceEEEEEeCCHHHHHHHHHHhCCC
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNR-SKGYGYVTSSTEEEAQKALVDMNGK 122 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~-~~g~afv~f~~~~~a~~ai~~l~g~ 122 (157)
++|-|+. ..+++.|+.+-.+.|- ....+.....+|+ -.-.-+-.|.+.++|++|+..|...
T Consensus 248 YTLQL~A---~Ss~~~l~~fakKlgL-~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 248 YTLQLSS---SSNYDNLNGWAKKENL-KNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred eEEEEEe---cCCHHHHHHHHHHcCC-CceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 4555554 4456778887777753 3333333333344 2233345789999999999988543
No 170
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=28.64 E-value=1.1e+02 Score=19.02 Aligned_cols=47 Identities=15% Similarity=0.043 Sum_probs=28.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhc-CCCeeEEEEeecCCCCCcceEEEEEeC
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQ-FGQVTEATIIMDIGKNRSKGYGYVTSS 107 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~afv~f~ 107 (157)
.-+|||+++..+.+.-...+-+. .++- .+.+... +....||.|-.+-
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~--~~~e~G~~~~t~G 73 (87)
T TIGR01873 26 AGVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWS--SNTCPGFEFFTLG 73 (87)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEe--CCCCCCcEEEecC
Confidence 34999999999887655555554 3332 2333332 1234578887764
No 171
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=26.91 E-value=85 Score=23.81 Aligned_cols=33 Identities=3% Similarity=0.178 Sum_probs=24.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEee
Q 036791 59 FWRCISVSFSTTKEMLADAFSQFGQVTEATIIM 91 (157)
Q Consensus 59 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~ 91 (157)
...|+|||++++..-+..++...-.+....++.
T Consensus 97 ~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 97 YKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 456999999999999988887654443444433
No 172
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=26.71 E-value=86 Score=19.10 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=21.3
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhCCC
Q 036791 97 RSKGYGYVTSSTEEEAQKALVDMNGK 122 (157)
Q Consensus 97 ~~~g~afv~f~~~~~a~~ai~~l~g~ 122 (157)
..+||-||+=.+..++..|++.+.+.
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CCceEEEEEeCCHHHHHHHHhcccce
Confidence 37899999999999999998876543
No 173
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=25.90 E-value=1.1e+02 Score=17.89 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=19.3
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCcc
Q 036791 101 YGYVTSSTEEEAQKALVDMNGKLL 124 (157)
Q Consensus 101 ~afv~f~~~~~a~~ai~~l~g~~~ 124 (157)
+.++.|.+..+|.+|-+.|...-+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 579999999999998887765443
No 174
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=25.55 E-value=69 Score=24.02 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=24.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCe
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQV 84 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i 84 (157)
....+|+-|+|..++++.|.++.+..|-+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~v 67 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHV 67 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhh
Confidence 34569999999999999999999988743
No 175
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=24.66 E-value=68 Score=16.49 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=9.9
Q ss_pred CCCCHHHHHHHHhcCC
Q 036791 67 FSTTKEMLADAFSQFG 82 (157)
Q Consensus 67 ~~~~~~~l~~~f~~~G 82 (157)
.++++.+|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678899999998764
No 176
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=20.48 E-value=55 Score=20.47 Aligned_cols=22 Identities=14% Similarity=-0.031 Sum_probs=17.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHH
Q 036791 56 NVSFWRCISVSFSTTKEMLADA 77 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~ 77 (157)
..++|-|.|||....++.|++.
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred cCCEEEEeCCCCCCChhhheee
Confidence 3467889999999999988743
No 177
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=20.12 E-value=2.3e+02 Score=17.46 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=18.7
Q ss_pred eeEEEEeecCCCCCcceEEEEEeCC
Q 036791 84 VTEATIIMDIGKNRSKGYGYVTSST 108 (157)
Q Consensus 84 i~~~~~~~~~~~~~~~g~afv~f~~ 108 (157)
|..+++-.-...++.+++|-|.|.+
T Consensus 3 itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 3 ITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred cEEEEEEEecCCCCEEEEEEEEECC
Confidence 5667776654558889999999865
Done!