Query 036791
Match_columns 157
No_of_seqs 146 out of 1673
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 08:54:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 1.9E-24 6.4E-29 138.9 11.4 81 56-136 18-98 (99)
2 2dgo_A Cytotoxic granule-assoc 99.9 9.5E-23 3.3E-27 134.0 15.0 91 55-145 13-103 (115)
3 3s8s_A Histone-lysine N-methyl 99.9 1E-22 3.5E-27 133.1 12.1 84 56-139 5-88 (110)
4 1whw_A Hypothetical protein ri 99.9 1.6E-22 5.4E-27 129.5 12.4 88 55-142 6-93 (99)
5 2dnz_A Probable RNA-binding pr 99.9 1.9E-22 6.5E-27 128.1 12.7 87 56-142 4-90 (95)
6 1u6f_A Tcubp1, RNA-binding pro 99.9 2.3E-22 7.8E-27 136.3 13.1 92 52-143 37-128 (139)
7 3md1_A Nuclear and cytoplasmic 99.9 2.7E-22 9.2E-27 124.3 12.1 81 58-138 2-82 (83)
8 1x5u_A Splicing factor 3B subu 99.9 2.2E-22 7.6E-27 130.1 11.8 87 55-141 13-99 (105)
9 2cq0_A Eukaryotic translation 99.9 3E-22 1E-26 129.1 12.3 87 55-141 13-99 (103)
10 2lxi_A RNA-binding protein 10; 99.9 2E-23 6.7E-28 132.1 6.4 84 58-141 2-87 (91)
11 2dgs_A DAZ-associated protein 99.9 4.6E-22 1.6E-26 127.4 12.7 87 55-142 8-94 (99)
12 2cpz_A CUG triplet repeat RNA- 99.9 4.8E-22 1.6E-26 130.6 13.0 87 55-141 23-109 (115)
13 2fy1_A RNA-binding motif prote 99.9 4.3E-22 1.5E-26 131.3 12.6 85 55-140 5-89 (116)
14 3bs9_A Nucleolysin TIA-1 isofo 99.9 3.5E-22 1.2E-26 124.8 11.5 82 56-137 5-86 (87)
15 2do0_A HnRNP M, heterogeneous 99.9 1.2E-21 4.1E-26 128.4 14.5 88 55-143 13-100 (114)
16 2cph_A RNA binding motif prote 99.9 5.2E-22 1.8E-26 128.7 12.3 89 54-142 12-102 (107)
17 1x5t_A Splicing factor 3B subu 99.9 2.4E-22 8.3E-27 127.9 10.4 88 55-142 3-91 (96)
18 2do4_A Squamous cell carcinoma 99.9 8.2E-22 2.8E-26 126.4 12.8 85 55-140 15-99 (100)
19 1x5s_A Cold-inducible RNA-bind 99.9 3.4E-22 1.2E-26 128.6 10.9 88 55-142 10-97 (102)
20 2cqb_A Peptidyl-prolyl CIS-tra 99.9 2.6E-22 8.8E-27 129.2 10.2 88 55-142 10-97 (102)
21 2dgp_A Bruno-like 4, RNA bindi 99.9 3.6E-22 1.2E-26 129.3 10.7 87 55-141 11-100 (106)
22 1p27_B RNA-binding protein 8A; 99.9 5.6E-22 1.9E-26 128.4 11.6 84 55-138 21-104 (106)
23 2d9p_A Polyadenylate-binding p 99.9 9.6E-22 3.3E-26 126.7 12.5 86 55-142 13-98 (103)
24 1x4h_A RNA-binding protein 28; 99.9 8.5E-22 2.9E-26 128.5 12.4 88 55-142 13-106 (111)
25 2dnm_A SRP46 splicing factor; 99.9 3.9E-22 1.4E-26 128.6 10.6 87 55-141 11-97 (103)
26 2cqd_A RNA-binding region cont 99.9 1.3E-21 4.4E-26 128.7 13.1 84 55-139 15-98 (116)
27 2lkz_A RNA-binding protein 5; 99.9 8.6E-23 2.9E-27 130.1 7.0 80 57-136 9-94 (95)
28 2dnh_A Bruno-like 5, RNA bindi 99.9 1.6E-21 5.3E-26 126.1 13.0 87 55-142 13-102 (105)
29 3p5t_L Cleavage and polyadenyl 99.9 8.9E-23 3.1E-27 128.7 6.9 81 58-138 2-84 (90)
30 3ex7_B RNA-binding protein 8A; 99.9 3.6E-22 1.2E-26 133.2 10.2 87 55-141 20-106 (126)
31 2dng_A Eukaryotic translation 99.9 1.8E-21 6E-26 125.5 13.0 85 55-141 13-97 (103)
32 1wi8_A EIF-4B, eukaryotic tran 99.9 9.6E-22 3.3E-26 127.0 11.6 86 55-142 13-99 (104)
33 2cpf_A RNA binding motif prote 99.9 9.2E-22 3.1E-26 125.7 11.3 86 56-141 4-92 (98)
34 2cpe_A RNA-binding protein EWS 99.9 6.5E-22 2.2E-26 129.6 10.8 87 55-141 13-107 (113)
35 2cqc_A Arginine/serine-rich sp 99.9 1.5E-21 5E-26 123.9 12.1 82 55-136 13-94 (95)
36 2la6_A RNA-binding protein FUS 99.9 1.2E-21 4.1E-26 125.4 11.6 81 55-135 11-99 (99)
37 1h2v_Z 20 kDa nuclear CAP bind 99.9 1.5E-21 5.1E-26 134.8 12.8 86 55-140 37-122 (156)
38 2jrs_A RNA-binding protein 39; 99.9 1.3E-21 4.3E-26 127.5 11.7 84 55-138 24-107 (108)
39 2x1f_A MRNA 3'-END-processing 99.9 1.1E-21 3.6E-26 125.0 11.0 83 57-139 2-84 (96)
40 4f25_A Polyadenylate-binding p 99.9 1E-21 3.5E-26 129.2 11.2 83 57-141 5-87 (115)
41 3mdf_A Peptidyl-prolyl CIS-tra 99.9 8.8E-22 3E-26 122.5 10.2 81 55-135 5-85 (85)
42 1oo0_B CG8781-PA, drosophila Y 99.9 9.7E-22 3.3E-26 128.1 10.6 85 55-139 24-108 (110)
43 1x4b_A Heterogeneous nuclear r 99.9 9.4E-22 3.2E-26 129.4 9.8 87 55-142 25-111 (116)
44 1p1t_A Cleavage stimulation fa 99.9 1.3E-22 4.6E-27 130.9 5.5 86 56-141 7-92 (104)
45 4a8x_A RNA-binding protein wit 99.9 1.5E-21 5.3E-26 122.1 10.1 84 56-139 3-87 (88)
46 2dhg_A TRNA selenocysteine ass 99.9 2.1E-21 7.2E-26 125.3 10.9 87 55-142 7-95 (104)
47 2e5h_A Zinc finger CCHC-type a 99.9 2.1E-21 7.3E-26 123.0 10.7 81 55-135 14-94 (94)
48 2cqi_A Nucleolysin TIAR; RNA r 99.9 6E-21 2.1E-25 123.0 12.6 86 55-142 13-98 (103)
49 2dh8_A DAZ-associated protein 99.9 1.9E-21 6.3E-26 125.8 10.2 86 55-141 14-99 (105)
50 3ns6_A Eukaryotic translation 99.9 5.5E-22 1.9E-26 127.5 7.4 82 57-138 6-94 (100)
51 1x4a_A Splicing factor, argini 99.9 6.6E-21 2.3E-25 124.0 12.6 85 55-142 20-104 (109)
52 2cq3_A RNA-binding protein 9; 99.9 1.1E-20 3.8E-25 121.7 13.4 85 55-141 13-97 (103)
53 3ucg_A Polyadenylate-binding p 99.9 3.5E-21 1.2E-25 120.7 10.7 82 56-138 5-86 (89)
54 2div_A TRNA selenocysteine ass 99.9 2.7E-21 9.2E-26 123.7 10.3 84 55-138 7-95 (99)
55 2m2b_A RNA-binding protein 10; 99.9 6.9E-22 2.4E-26 132.9 7.7 86 55-141 21-112 (131)
56 2kxn_B Transformer-2 protein h 99.9 1.8E-21 6.2E-26 130.6 9.7 85 55-139 44-128 (129)
57 2cqg_A TDP-43, TAR DNA-binding 99.9 1.1E-20 3.9E-25 121.6 13.1 85 55-141 13-97 (103)
58 3n9u_C Cleavage and polyadenyl 99.9 2.3E-21 7.7E-26 134.1 10.0 82 56-137 54-137 (156)
59 2dgx_A KIAA0430 protein; RRM d 99.9 4.7E-21 1.6E-25 122.1 10.5 82 55-139 7-92 (96)
60 2khc_A Testis-specific RNP-typ 99.9 2.9E-21 1E-25 127.3 9.9 82 54-135 37-118 (118)
61 2cqp_A RNA-binding protein 12; 99.9 3.7E-21 1.3E-25 122.8 9.7 84 55-138 13-96 (98)
62 2kn4_A Immunoglobulin G-bindin 99.9 6.2E-21 2.1E-25 131.8 11.6 87 55-141 68-154 (158)
63 2ywk_A Putative RNA-binding pr 99.9 7.3E-21 2.5E-25 120.7 11.0 81 55-136 14-94 (95)
64 2fc8_A NCL protein; structure 99.9 9.6E-21 3.3E-25 121.7 11.5 86 54-142 12-97 (102)
65 3ulh_A THO complex subunit 4; 99.9 1.1E-20 3.7E-25 122.5 11.9 81 55-136 27-107 (107)
66 2rs2_A Musashi-1, RNA-binding 99.9 4.7E-21 1.6E-25 125.0 10.2 86 54-140 22-107 (109)
67 2cq4_A RNA binding motif prote 99.9 6.8E-22 2.3E-26 129.7 6.0 84 55-139 23-106 (114)
68 2dgv_A HnRNP M, heterogeneous 99.9 1.2E-20 4E-25 119.1 11.4 83 55-139 6-88 (92)
69 2jwn_A Embryonic polyadenylate 99.9 6.3E-21 2.1E-25 126.8 10.6 84 55-139 34-117 (124)
70 3s7r_A Heterogeneous nuclear r 99.8 1.2E-20 4.1E-25 117.9 10.8 79 55-134 9-87 (87)
71 2cpi_A CCR4-NOT transcription 99.8 6.9E-21 2.3E-25 124.5 10.0 84 55-138 13-102 (111)
72 1rk8_A CG8781-PA, CG8781-PA pr 99.8 9E-21 3.1E-25 132.1 11.1 87 55-141 70-156 (165)
73 2dis_A Unnamed protein product 99.8 1.4E-20 4.7E-25 122.4 11.0 87 55-141 6-96 (109)
74 3md3_A Nuclear and cytoplasmic 99.8 3.5E-20 1.2E-24 127.8 13.3 112 9-136 55-166 (166)
75 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.2E-21 7.4E-26 124.6 6.7 83 54-138 16-99 (100)
76 2fc9_A NCL protein; structure 99.8 1.7E-20 5.9E-25 120.4 10.8 82 55-140 13-94 (101)
77 2lcw_A RNA-binding protein FUS 99.7 8.8E-23 3E-27 134.4 0.0 93 55-147 5-105 (116)
78 1s79_A Lupus LA protein; RRM, 99.8 9.6E-21 3.3E-25 122.3 9.4 80 55-136 9-88 (103)
79 2mss_A Protein (musashi1); RNA 99.8 4.2E-21 1.5E-25 116.8 7.0 75 59-134 1-75 (75)
80 2ek1_A RNA-binding protein 12; 99.8 6.4E-21 2.2E-25 121.0 8.1 81 56-136 14-94 (95)
81 2lea_A Serine/arginine-rich sp 99.8 4.3E-21 1.5E-25 129.7 7.5 87 55-141 45-131 (135)
82 2dgw_A Probable RNA-binding pr 99.8 3.9E-20 1.4E-24 116.5 11.5 81 55-138 8-88 (91)
83 1x4e_A RNA binding motif, sing 99.8 1.6E-21 5.5E-26 121.4 4.9 81 56-136 4-84 (85)
84 2dnq_A RNA-binding protein 4B; 99.8 5E-20 1.7E-24 115.9 11.8 79 55-141 6-84 (90)
85 2kt5_A RNA and export factor-b 99.8 5.4E-20 1.9E-24 122.3 12.3 84 55-139 33-116 (124)
86 1x5o_A RNA binding motif, sing 99.8 6E-20 2E-24 120.3 12.1 83 55-138 23-113 (114)
87 2dgu_A Heterogeneous nuclear r 99.8 5.2E-20 1.8E-24 118.6 11.5 81 55-143 9-89 (103)
88 1wez_A HnRNP H', FTP-3, hetero 99.8 2.3E-20 8E-25 120.3 9.8 82 55-139 13-94 (102)
89 1sjq_A Polypyrimidine tract-bi 99.8 1.6E-20 5.5E-25 121.2 9.0 81 55-141 14-96 (105)
90 2hvz_A Splicing factor, argini 99.8 2E-20 6.7E-25 120.1 9.3 80 58-142 1-80 (101)
91 2yh0_A Splicing factor U2AF 65 99.8 7.8E-20 2.7E-24 129.8 13.2 130 9-139 65-196 (198)
92 2qfj_A FBP-interacting repress 99.8 5.1E-20 1.7E-24 132.4 12.2 122 9-138 84-206 (216)
93 2err_A Ataxin-2-binding protei 99.8 1.9E-20 6.6E-25 122.0 9.0 84 52-137 24-107 (109)
94 2ki2_A SS-DNA binding protein 99.8 2.6E-21 9E-26 121.7 4.6 80 58-138 2-81 (90)
95 2i2y_A Fusion protein consists 99.8 2.8E-20 9.6E-25 127.6 10.0 123 8-138 26-149 (150)
96 2cpx_A Hypothetical protein FL 99.8 8.8E-21 3E-25 124.4 7.1 88 55-142 23-110 (115)
97 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 4.1E-20 1.4E-24 125.0 10.6 80 55-134 61-140 (140)
98 1x4c_A Splicing factor, argini 99.8 1.6E-19 5.4E-24 117.4 12.9 79 55-140 13-96 (108)
99 1uaw_A Mouse-musashi-1; RNP-ty 99.8 8.2E-21 2.8E-25 115.9 6.4 76 58-134 1-76 (77)
100 1fj7_A Nucleolin RBD1, protein 99.8 2.4E-21 8.2E-26 124.4 3.9 84 55-140 15-98 (101)
101 2nlw_A Eukaryotic translation 99.8 3.1E-20 1.1E-24 120.2 8.8 82 56-139 14-102 (105)
102 3r27_A HnRNP L, heterogeneous 99.8 5.7E-20 1.9E-24 117.6 9.9 78 55-138 19-98 (100)
103 2cq1_A PTB-like protein L; RRM 99.8 1.7E-19 5.6E-24 116.1 12.0 81 55-141 13-95 (101)
104 2dgt_A RNA-binding protein 30; 99.8 1.7E-19 5.8E-24 113.9 11.6 80 55-142 8-87 (92)
105 3q2s_C Cleavage and polyadenyl 99.8 2.6E-20 8.8E-25 136.2 8.9 81 56-136 67-149 (229)
106 1x4g_A Nucleolysin TIAR; struc 99.8 1E-19 3.6E-24 118.3 10.8 81 55-141 23-103 (109)
107 1why_A Hypothetical protein ri 99.8 1.3E-19 4.4E-24 115.5 10.8 79 55-139 15-95 (97)
108 1l3k_A Heterogeneous nuclear r 99.8 1.5E-19 5.2E-24 128.1 12.3 90 56-146 103-192 (196)
109 1wg5_A Heterogeneous nuclear r 99.8 1.4E-19 4.9E-24 116.8 11.0 82 55-138 13-95 (104)
110 2cpj_A Non-POU domain-containi 99.8 1.4E-19 4.9E-24 115.7 10.8 81 55-141 13-93 (99)
111 2jvo_A Nucleolar protein 3; nu 99.8 9E-20 3.1E-24 118.7 9.9 80 53-140 27-106 (108)
112 2ad9_A Polypyrimidine tract-bi 99.8 1.7E-19 5.9E-24 119.0 11.2 81 55-141 29-111 (119)
113 2wbr_A GW182, gawky, LD47780P; 99.8 4.4E-20 1.5E-24 114.8 7.8 73 57-135 7-79 (89)
114 1wex_A Hypothetical protein (r 99.8 2E-19 6.7E-24 116.3 11.0 80 55-140 13-94 (104)
115 1x4d_A Matrin 3; structural ge 99.8 5.2E-20 1.8E-24 118.5 8.2 78 56-139 14-94 (102)
116 2a3j_A U1 small nuclear ribonu 99.8 8E-20 2.7E-24 122.2 9.4 81 56-139 28-112 (127)
117 4f02_A Polyadenylate-binding p 99.8 1.4E-19 4.7E-24 130.7 11.3 82 56-139 102-183 (213)
118 2db1_A Heterogeneous nuclear r 99.8 2.8E-20 9.5E-25 122.9 7.0 81 55-137 15-98 (118)
119 2cpd_A Apobec-1 stimulating pr 99.8 4.4E-19 1.5E-23 113.4 12.5 78 55-140 13-92 (99)
120 1fjc_A Nucleolin RBD2, protein 99.8 7.2E-20 2.5E-24 116.4 8.4 81 55-140 14-94 (96)
121 2cpy_A RNA-binding protein 12; 99.8 3E-20 1E-24 122.0 6.7 82 55-138 13-95 (114)
122 2kvi_A Nuclear polyadenylated 99.8 1.2E-19 4E-24 115.6 9.3 79 55-141 8-87 (96)
123 2e5j_A Methenyltetrahydrofolat 99.8 2E-19 6.8E-24 114.7 9.9 80 55-139 17-96 (97)
124 1nu4_A U1A RNA binding domain; 99.8 8.2E-20 2.8E-24 116.2 7.9 82 55-139 6-91 (97)
125 2hgl_A HNRPF protein, heteroge 99.8 5.5E-20 1.9E-24 124.3 7.3 81 55-137 42-125 (136)
126 2cqh_A IGF-II mRNA-binding pro 99.8 1.2E-19 4.2E-24 114.7 8.4 80 55-141 6-87 (93)
127 2jvr_A Nucleolar protein 3; RN 99.8 8.7E-20 3E-24 119.2 7.9 79 56-138 27-106 (111)
128 2xnq_A Nuclear polyadenylated 99.8 3.9E-19 1.3E-23 113.5 10.7 77 54-138 19-96 (97)
129 1wel_A RNA-binding protein 12; 99.8 2.8E-20 9.6E-25 123.8 5.5 82 55-137 23-104 (124)
130 2xs2_A Deleted in azoospermia- 99.8 7.1E-20 2.4E-24 117.7 7.1 82 56-140 8-89 (102)
131 2dnp_A RNA-binding protein 14; 99.8 3.2E-19 1.1E-23 112.1 10.0 78 55-140 7-84 (90)
132 2la4_A Nuclear and cytoplasmic 99.8 1.5E-19 5.1E-24 116.0 8.5 76 56-137 26-101 (101)
133 2krb_A Eukaryotic translation 99.8 5.6E-20 1.9E-24 113.5 6.3 72 58-131 2-80 (81)
134 2g4b_A Splicing factor U2AF 65 99.8 4.2E-19 1.4E-23 123.4 11.3 79 57-135 94-172 (172)
135 1iqt_A AUF1, heterogeneous nuc 99.8 2.8E-20 9.5E-25 113.1 4.6 75 59-134 1-75 (75)
136 3lqv_A PRE-mRNA branch site pr 99.8 2.7E-19 9.2E-24 117.3 9.7 80 56-138 7-86 (115)
137 2e5g_A U6 snRNA-specific termi 99.8 4.2E-19 1.4E-23 112.5 10.2 79 56-140 7-85 (94)
138 2ytc_A PRE-mRNA-splicing facto 99.8 3.6E-19 1.2E-23 110.6 9.7 75 55-135 10-85 (85)
139 3pgw_S U1-70K; protein-RNA com 99.8 5.8E-19 2E-23 139.9 13.1 84 55-138 100-183 (437)
140 2dnn_A RNA-binding protein 12; 99.8 5.6E-20 1.9E-24 119.9 6.0 78 57-137 16-93 (109)
141 4f02_A Polyadenylate-binding p 99.8 5.6E-19 1.9E-23 127.5 11.8 82 56-137 14-95 (213)
142 1wf1_A RNA-binding protein RAL 99.8 5.3E-19 1.8E-23 115.2 10.4 76 56-139 26-102 (110)
143 1b7f_A Protein (SXL-lethal pro 99.8 1.4E-18 4.6E-23 120.3 12.8 108 9-134 59-168 (168)
144 1fxl_A Paraneoplastic encephal 99.8 1.2E-18 4.2E-23 120.2 12.0 83 57-139 2-84 (167)
145 1x5p_A Negative elongation fac 99.8 2.3E-18 7.7E-23 109.7 12.2 79 55-141 13-91 (97)
146 2cjk_A Nuclear polyadenylated 99.8 2.2E-19 7.5E-24 124.3 7.8 110 27-137 42-166 (167)
147 2lmi_A GRSF-1, G-rich sequence 99.8 5.4E-20 1.8E-24 119.5 4.4 81 55-137 9-92 (107)
148 2j8a_A Histone-lysine N-methyl 99.8 3.6E-19 1.2E-23 117.8 8.4 79 58-136 3-95 (136)
149 1b7f_A Protein (SXL-lethal pro 99.8 1E-18 3.5E-23 120.9 11.1 83 57-139 3-85 (168)
150 1whx_A Hypothetical protein ri 99.8 6.1E-19 2.1E-23 115.3 9.1 77 56-138 9-85 (111)
151 1fje_B Nucleolin RBD12, protei 99.8 1.2E-18 4.1E-23 121.6 11.2 79 55-138 97-175 (175)
152 1fxl_A Paraneoplastic encephal 99.8 2.2E-18 7.7E-23 118.8 12.4 108 9-134 58-167 (167)
153 2hgn_A Heterogeneous nuclear r 99.8 7.1E-20 2.4E-24 124.2 4.6 83 55-140 44-126 (139)
154 2f3j_A RNA and export factor b 99.8 6.7E-19 2.3E-23 124.0 9.6 82 56-138 87-168 (177)
155 1sjr_A Polypyrimidine tract-bi 99.8 1.9E-18 6.4E-23 119.6 11.3 80 55-138 44-125 (164)
156 1x4f_A Matrin 3; structural ge 99.8 1.5E-18 5.1E-23 113.4 9.8 80 55-140 23-105 (112)
157 2e44_A Insulin-like growth fac 99.8 1E-18 3.5E-23 111.0 8.7 78 56-137 14-92 (96)
158 3egn_A RNA-binding protein 40; 99.8 1.2E-18 4E-23 118.5 9.2 87 55-141 43-134 (143)
159 3zzy_A Polypyrimidine tract-bi 99.8 4.5E-18 1.5E-22 113.7 11.8 79 55-138 26-107 (130)
160 3beg_B Splicing factor, argini 99.8 1.5E-18 5.1E-23 114.0 9.0 77 56-139 15-96 (115)
161 1l3k_A Heterogeneous nuclear r 99.8 3.4E-18 1.1E-22 121.1 11.4 84 55-139 11-94 (196)
162 3smz_A Protein raver-1, ribonu 99.8 4.6E-18 1.6E-22 127.3 12.1 116 9-140 151-267 (284)
163 1wg1_A KIAA1579 protein, homol 99.8 2.4E-18 8.1E-23 107.8 8.6 76 56-138 4-79 (88)
164 2dha_A FLJ20171 protein; RRM d 99.8 7.5E-19 2.6E-23 116.8 6.4 81 55-137 21-105 (123)
165 3nmr_A Cugbp ELAV-like family 99.8 1.5E-17 5.2E-22 115.6 12.6 79 56-135 94-175 (175)
166 2hgm_A HNRPF protein, heteroge 99.8 9.7E-19 3.3E-23 116.6 6.1 80 55-137 40-121 (126)
167 2ghp_A U4/U6 snRNA-associated 99.8 5.7E-18 2E-22 127.2 10.7 118 9-138 173-292 (292)
168 2diu_A KIAA0430 protein; struc 99.8 1.3E-17 4.5E-22 104.6 10.3 74 58-141 10-88 (96)
169 3smz_A Protein raver-1, ribonu 99.7 2.5E-17 8.7E-22 123.2 13.9 85 56-140 94-178 (284)
170 2e5i_A Heterogeneous nuclear r 99.7 2.4E-17 8.1E-22 109.5 11.7 78 55-138 23-103 (124)
171 3md3_A Nuclear and cytoplasmic 99.7 1.4E-17 4.8E-22 114.7 10.9 81 58-139 1-81 (166)
172 2cq2_A Hypothetical protein LO 99.7 6.5E-18 2.2E-22 110.5 8.3 76 56-137 24-106 (114)
173 2qfj_A FBP-interacting repress 99.7 9.7E-18 3.3E-22 120.4 9.9 84 55-138 26-109 (216)
174 3d2w_A TAR DNA-binding protein 99.7 1.2E-17 4.2E-22 104.8 9.0 76 55-139 9-86 (89)
175 1wf0_A TDP-43, TAR DNA-binding 99.7 5.2E-18 1.8E-22 106.1 6.3 80 56-142 4-83 (88)
176 2dnl_A Cytoplasmic polyadenyla 99.7 2.1E-17 7.2E-22 108.3 9.5 76 56-134 7-85 (114)
177 3nmr_A Cugbp ELAV-like family 99.7 3E-17 1E-21 114.1 10.8 83 56-138 2-89 (175)
178 2bz2_A Negative elongation fac 99.7 2.4E-17 8.2E-22 109.2 9.5 78 55-140 37-114 (121)
179 3tyt_A Heterogeneous nuclear r 99.7 2.4E-17 8.3E-22 118.5 10.0 77 56-137 3-80 (205)
180 2hzc_A Splicing factor U2AF 65 99.7 3.9E-17 1.3E-21 101.7 8.4 71 56-133 5-86 (87)
181 3pgw_A U1-A; protein-RNA compl 99.7 1.4E-16 4.7E-21 119.1 12.6 76 56-136 206-282 (282)
182 2pe8_A Splicing factor 45; RRM 99.7 1.6E-16 5.4E-21 102.8 11.1 81 56-136 7-93 (105)
183 3pgw_A U1-A; protein-RNA compl 99.7 1E-16 3.4E-21 119.9 11.3 81 55-138 7-91 (282)
184 3tyt_A Heterogeneous nuclear r 99.7 9.3E-17 3.2E-21 115.5 10.7 125 8-134 55-204 (205)
185 2cjk_A Nuclear polyadenylated 99.7 3.7E-17 1.3E-21 113.0 8.2 80 56-137 2-81 (167)
186 2adc_A Polypyrimidine tract-bi 99.7 4.2E-16 1.4E-20 113.6 13.8 124 9-137 86-228 (229)
187 2voo_A Lupus LA protein; RNA-b 99.7 1.4E-16 4.8E-21 113.6 10.7 79 56-136 108-186 (193)
188 3sde_A Paraspeckle component 1 99.7 2.1E-16 7.3E-21 117.3 12.0 81 57-138 96-180 (261)
189 3u1l_A PRE-mRNA-splicing facto 99.7 6.7E-17 2.3E-21 118.4 8.8 79 55-139 132-231 (240)
190 1qm9_A Polypyrimidine tract-bi 99.7 2.3E-16 8E-21 112.1 11.4 125 8-137 54-197 (198)
191 2ghp_A U4/U6 snRNA-associated 99.7 2.5E-16 8.5E-21 118.2 9.9 110 30-140 81-200 (292)
192 2adc_A Polypyrimidine tract-bi 99.7 2.6E-16 8.8E-21 114.7 9.7 78 55-137 32-110 (229)
193 2dit_A HIV TAT specific factor 99.7 1.2E-15 4.1E-20 99.6 11.4 83 55-141 13-106 (112)
194 1fje_B Nucleolin RBD12, protei 99.6 6.3E-17 2.1E-21 112.8 3.5 83 55-139 11-93 (175)
195 1qm9_A Polypyrimidine tract-bi 99.6 3.8E-16 1.3E-20 111.0 7.2 76 57-137 3-79 (198)
196 3sde_A Paraspeckle component 1 99.6 2.4E-15 8.2E-20 111.6 10.4 77 55-137 20-96 (261)
197 1jmt_A Splicing factor U2AF 35 99.6 4E-16 1.4E-20 100.7 4.5 72 62-134 20-103 (104)
198 3ue2_A Poly(U)-binding-splicin 99.6 6.6E-15 2.2E-19 97.0 9.6 81 56-136 19-108 (118)
199 3v4m_A Splicing factor U2AF 65 99.6 5.2E-15 1.8E-19 95.6 8.7 81 56-136 4-96 (105)
200 2g4b_A Splicing factor U2AF 65 99.6 7.5E-15 2.6E-19 101.7 9.2 76 56-138 3-89 (172)
201 2yh0_A Splicing factor U2AF 65 99.6 1.6E-14 5.4E-19 102.2 10.4 75 57-138 4-89 (198)
202 2d9o_A DNAJ (HSP40) homolog, s 99.6 2.7E-14 9.2E-19 91.4 9.6 67 67-140 27-93 (100)
203 3tht_A Alkylated DNA repair pr 99.5 6E-14 2.1E-18 107.7 8.6 75 55-135 16-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 6.3E-13 2.1E-17 86.9 7.0 61 72-136 32-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.4 5.8E-12 2E-16 78.3 8.7 77 55-140 5-89 (91)
206 1owx_A Lupus LA protein, SS-B, 99.3 3.7E-11 1.3E-15 79.0 8.7 75 55-135 16-94 (121)
207 3dxb_A Thioredoxin N-terminall 99.2 1.5E-10 5.1E-15 83.6 9.2 68 69-136 141-212 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.1 1.1E-10 3.7E-15 72.9 6.0 73 55-136 13-94 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.8 2.5E-08 8.4E-13 63.6 8.0 72 56-133 20-96 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.0 0.00041 1.4E-08 43.7 12.1 76 57-141 8-88 (104)
211 1wey_A Calcipressin 1; structu 97.8 5.4E-05 1.8E-09 47.9 6.0 74 58-137 6-84 (104)
212 1whv_A Poly(A)-specific ribonu 97.7 0.00015 5.2E-09 45.2 6.8 53 58-119 17-69 (100)
213 1uw4_A UPF3X; nonsense mediate 97.6 0.00063 2.2E-08 42.1 8.0 68 58-125 2-71 (91)
214 3ctr_A Poly(A)-specific ribonu 97.5 0.00014 4.8E-09 45.5 4.9 52 60-120 9-60 (101)
215 1wwh_A Nucleoporin 35, nucleop 97.1 0.0045 1.5E-07 40.1 8.3 70 57-134 24-94 (119)
216 2kn4_A Immunoglobulin G-bindin 96.7 0.0028 9.6E-08 42.6 5.0 44 86-131 2-45 (158)
217 2i2y_A Fusion protein consists 96.6 0.0011 3.8E-08 44.4 2.4 42 95-137 9-51 (150)
218 2l08_A Regulator of nonsense t 96.4 0.008 2.7E-07 37.4 5.3 68 58-125 10-79 (97)
219 3p3d_A Nucleoporin 53; structu 96.3 0.0037 1.3E-07 41.1 3.6 76 58-135 8-97 (132)
220 4f25_A Polyadenylate-binding p 95.3 0.0083 2.8E-07 38.2 2.2 55 9-73 59-113 (115)
221 3pq1_A Poly(A) RNA polymerase; 95.3 0.012 4.1E-07 46.7 3.4 55 58-118 54-108 (464)
222 3d45_A Poly(A)-specific ribonu 91.5 0.86 2.9E-05 36.6 8.0 54 59-121 442-495 (507)
223 2hvz_A Splicing factor, argini 87.0 0.39 1.3E-05 29.2 2.4 21 8-28 50-70 (101)
224 2g0c_A ATP-dependent RNA helic 64.0 18 0.0006 20.5 5.0 60 67-135 11-75 (76)
225 2cu1_A Mitogen-activated prote 38.4 69 0.0023 19.7 6.2 71 60-139 19-90 (103)
226 3fut_A Dimethyladenosine trans 24.6 85 0.0029 22.6 4.0 33 58-91 111-143 (271)
227 2lfv_A Protein DAMX; cell divi 29.6 17 0.00057 22.6 0.0 55 68-123 33-88 (106)
228 3uzu_A Ribosomal RNA small sub 22.6 29 0.00099 25.3 1.1 33 59-91 116-148 (279)
229 4e8u_A Putative uncharacterize 21.1 2E+02 0.0068 19.4 7.5 45 70-117 34-81 (172)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.92 E-value=1.9e-24 Score=138.91 Aligned_cols=81 Identities=30% Similarity=0.416 Sum_probs=78.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..++|++|+|.+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 036791 136 P 136 (157)
Q Consensus 136 ~ 136 (157)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 2
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.90 E-value=9.5e-23 Score=133.96 Aligned_cols=91 Identities=26% Similarity=0.379 Sum_probs=84.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||..+++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCC
Q 036791 135 RPSRRYNTDAS 145 (157)
Q Consensus 135 ~~~~~~~~~~~ 145 (157)
+++........
T Consensus 93 ~~~~~~~~~~~ 103 (115)
T 2dgo_A 93 TRKPPAPKSTY 103 (115)
T ss_dssp SCCCCCSCCCC
T ss_pred cCCCCCCcccc
Confidence 98766554433
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.89 E-value=1e-22 Score=133.15 Aligned_cols=84 Identities=13% Similarity=0.203 Sum_probs=79.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
+..+|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.|||..++|+.|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 036791 136 PSRR 139 (157)
Q Consensus 136 ~~~~ 139 (157)
.+..
T Consensus 85 ~~~~ 88 (110)
T 3s8s_A 85 KGQQ 88 (110)
T ss_dssp TTHH
T ss_pred CCcH
Confidence 6543
No 4
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=1.6e-22 Score=129.48 Aligned_cols=88 Identities=23% Similarity=0.373 Sum_probs=82.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||+.+++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|++|+..|||..+.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35678999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 036791 135 RPSRRYNT 142 (157)
Q Consensus 135 ~~~~~~~~ 142 (157)
.++.....
T Consensus 86 ~~~~~~~~ 93 (99)
T 1whw_A 86 TIKKEASQ 93 (99)
T ss_dssp CCCSTTCC
T ss_pred CCCccccc
Confidence 98766543
No 5
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.9e-22 Score=128.10 Aligned_cols=87 Identities=33% Similarity=0.471 Sum_probs=81.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..++|||+|||..+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..++|++|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45789999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 036791 136 PSRRYNT 142 (157)
Q Consensus 136 ~~~~~~~ 142 (157)
++..+..
T Consensus 84 ~~~~~~~ 90 (95)
T 2dnz_A 84 ERLDGGS 90 (95)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 8765543
No 6
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.89 E-value=2.3e-22 Score=136.29 Aligned_cols=92 Identities=17% Similarity=0.244 Sum_probs=84.7
Q ss_pred hccccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q 036791 52 MQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131 (157)
Q Consensus 52 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v 131 (157)
......++|||+|||.++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 33455689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCCC
Q 036791 132 DNVRPSRRYNTD 143 (157)
Q Consensus 132 ~~~~~~~~~~~~ 143 (157)
.+++++..+...
T Consensus 117 ~~a~~~~~~~~~ 128 (139)
T 1u6f_A 117 ALAASGHQRPGI 128 (139)
T ss_dssp EESSCCCCCCCS
T ss_pred EECCCCCCCCCC
Confidence 999987666543
No 7
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.89 E-value=2.7e-22 Score=124.32 Aligned_cols=81 Identities=23% Similarity=0.410 Sum_probs=78.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCC
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPS 137 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~ 137 (157)
.+|||+|||.++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|++|++.|||..++|++|+|.+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 036791 138 R 138 (157)
Q Consensus 138 ~ 138 (157)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 8
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=2.2e-22 Score=130.10 Aligned_cols=87 Identities=22% Similarity=0.226 Sum_probs=81.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|+..||+..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 036791 135 RPSRRYN 141 (157)
Q Consensus 135 ~~~~~~~ 141 (157)
.++....
T Consensus 93 ~~~~~~~ 99 (105)
T 1x5u_A 93 SAHNKNL 99 (105)
T ss_dssp TTTSCCC
T ss_pred CCCCcCC
Confidence 9876544
No 9
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=3e-22 Score=129.10 Aligned_cols=87 Identities=22% Similarity=0.355 Sum_probs=81.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||..+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|+..||+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 036791 135 RPSRRYN 141 (157)
Q Consensus 135 ~~~~~~~ 141 (157)
.++....
T Consensus 93 ~~~~~~~ 99 (103)
T 2cq0_A 93 KPSTNSG 99 (103)
T ss_dssp SCCCCSC
T ss_pred CCCCCCC
Confidence 9876543
No 10
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.89 E-value=2e-23 Score=132.11 Aligned_cols=84 Identities=14% Similarity=0.239 Sum_probs=77.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC-CCccCCcEEEEEeec
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFG-QVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMN-GKLLDGRVIFVDNVR 135 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~-g~~~~g~~l~v~~~~ 135 (157)
.+|||+|||+++++++|+++|++|| .|..+.++.++.+|+++|||||+|.+.++|++|++.++ +..++|++|+|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 4799999999999999999999999 89999999999999999999999999999999999874 557999999999999
Q ss_pred CCCCCC
Q 036791 136 PSRRYN 141 (157)
Q Consensus 136 ~~~~~~ 141 (157)
++....
T Consensus 82 ~~~~~~ 87 (91)
T 2lxi_A 82 PKPKIN 87 (91)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 876543
No 11
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=4.6e-22 Score=127.38 Aligned_cols=87 Identities=23% Similarity=0.370 Sum_probs=81.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||..+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++ |++..++|+.|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 356789999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCCCC
Q 036791 135 RPSRRYNT 142 (157)
Q Consensus 135 ~~~~~~~~ 142 (157)
.++.....
T Consensus 87 ~~~~~~~~ 94 (99)
T 2dgs_A 87 EPRDSKSS 94 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCcccCC
Confidence 98765443
No 12
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.89 E-value=4.8e-22 Score=130.62 Aligned_cols=87 Identities=23% Similarity=0.256 Sum_probs=81.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||.++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..|.|++|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 34578999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 036791 135 RPSRRYN 141 (157)
Q Consensus 135 ~~~~~~~ 141 (157)
+++....
T Consensus 103 ~~~~~~~ 109 (115)
T 2cpz_A 103 RSKNDSK 109 (115)
T ss_dssp CCSCCCC
T ss_pred CCCCcCC
Confidence 9876543
No 13
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.88 E-value=4.3e-22 Score=131.29 Aligned_cols=85 Identities=26% Similarity=0.402 Sum_probs=79.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||.++++++|+++|++||.|..+.++.++ +++++|||||+|.+.++|++|++.|||..++|+.|+|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 446789999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 036791 135 RPSRRY 140 (157)
Q Consensus 135 ~~~~~~ 140 (157)
+++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 876543
No 14
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.88 E-value=3.5e-22 Score=124.85 Aligned_cols=82 Identities=28% Similarity=0.441 Sum_probs=77.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
+..+|||+|||.++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.|||..++|+.|+|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45789999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CC
Q 036791 136 PS 137 (157)
Q Consensus 136 ~~ 137 (157)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 75
No 15
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.2e-21 Score=128.41 Aligned_cols=88 Identities=26% Similarity=0.226 Sum_probs=80.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||+.+++++|+++|.+||.|..+.++.++ +++++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 345789999999999999999999999999999999996 5999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 036791 135 RPSRRYNTD 143 (157)
Q Consensus 135 ~~~~~~~~~ 143 (157)
+....+...
T Consensus 92 ~~~~~~~~~ 100 (114)
T 2do0_A 92 ERALPKGDF 100 (114)
T ss_dssp SCCCCCSCC
T ss_pred ccCCCCCCC
Confidence 876555443
No 16
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=5.2e-22 Score=128.72 Aligned_cols=89 Identities=19% Similarity=0.358 Sum_probs=82.2
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeec-CCCCCcceEEEEEeCCHHHHHHHHHHh-CCCccCCcEEEE
Q 036791 54 LVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMD-IGKNRSKGYGYVTSSTEEEAQKALVDM-NGKLLDGRVIFV 131 (157)
Q Consensus 54 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~ai~~l-~g~~~~g~~l~v 131 (157)
....++|||+|||+.+++++|+++|+.||.|..+.++.+ +.+++++|||||+|.+.++|++|+..| |+..+.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 345678999999999999999999999999999999998 788999999999999999999999999 999999999999
Q ss_pred EeecCCCCCCC
Q 036791 132 DNVRPSRRYNT 142 (157)
Q Consensus 132 ~~~~~~~~~~~ 142 (157)
.+++++.....
T Consensus 92 ~~a~~~~~~~~ 102 (107)
T 2cph_A 92 EWADSEVTVQS 102 (107)
T ss_dssp EECCCCCCCCC
T ss_pred EeCCCCCCCCC
Confidence 99998765443
No 17
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.4e-22 Score=127.86 Aligned_cols=88 Identities=24% Similarity=0.311 Sum_probs=81.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEA-TIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 133 (157)
...++|||+|||..+++++|+++|++||.|..+ .++.++.+++++|||||+|.+.++|++|+..||+..++|++|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 346789999999999999999999999999999 9999989999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 036791 134 VRPSRRYNT 142 (157)
Q Consensus 134 ~~~~~~~~~ 142 (157)
+.++..+..
T Consensus 83 a~~~~~~~~ 91 (96)
T 1x5t_A 83 AFKKDSKGS 91 (96)
T ss_dssp SCCCCCCCC
T ss_pred ecccCCCCC
Confidence 998765543
No 18
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=8.2e-22 Score=126.40 Aligned_cols=85 Identities=22% Similarity=0.332 Sum_probs=79.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||..+++++|+++|++||.|..+.++.++ +++++|||||+|.+.++|++|++.||+..++|++|+|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 445789999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 036791 135 RPSRRY 140 (157)
Q Consensus 135 ~~~~~~ 140 (157)
+++..+
T Consensus 94 ~~~~~~ 99 (100)
T 2do4_A 94 NSGPSS 99 (100)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 987653
No 19
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.4e-22 Score=128.56 Aligned_cols=88 Identities=33% Similarity=0.541 Sum_probs=81.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..++|++|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35678999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 036791 135 RPSRRYNT 142 (157)
Q Consensus 135 ~~~~~~~~ 142 (157)
+++.....
T Consensus 90 ~~~~~~~~ 97 (102)
T 1x5s_A 90 GKSSDNRS 97 (102)
T ss_dssp ECCCCCCC
T ss_pred CCCCCCCC
Confidence 98765433
No 20
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.6e-22 Score=129.16 Aligned_cols=88 Identities=25% Similarity=0.381 Sum_probs=82.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 036791 135 RPSRRYNT 142 (157)
Q Consensus 135 ~~~~~~~~ 142 (157)
+++.....
T Consensus 90 ~~~~~~~~ 97 (102)
T 2cqb_A 90 KPMRIKES 97 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 98765443
No 21
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.88 E-value=3.6e-22 Score=129.32 Aligned_cols=87 Identities=21% Similarity=0.192 Sum_probs=81.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc---CCcEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL---DGRVIFV 131 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~---~g~~l~v 131 (157)
...++|||+|||.++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..+ .|++|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999999987 8999999
Q ss_pred EeecCCCCCC
Q 036791 132 DNVRPSRRYN 141 (157)
Q Consensus 132 ~~~~~~~~~~ 141 (157)
.++.++..+.
T Consensus 91 ~~a~~~~~~~ 100 (106)
T 2dgp_A 91 KPADSESRGG 100 (106)
T ss_dssp EECCCCSCCC
T ss_pred EECCcccccC
Confidence 9999876544
No 22
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=5.6e-22 Score=128.41 Aligned_cols=84 Identities=29% Similarity=0.321 Sum_probs=80.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||..+++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|++|+..|||..++|+.|+|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 036791 135 RPSR 138 (157)
Q Consensus 135 ~~~~ 138 (157)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8765
No 23
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=9.6e-22 Score=126.73 Aligned_cols=86 Identities=31% Similarity=0.514 Sum_probs=80.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||+.+++++|+++|++||.|..+.++.+ +++++|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45678999999999999999999999999999999987 7999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 036791 135 RPSRRYNT 142 (157)
Q Consensus 135 ~~~~~~~~ 142 (157)
.++..+..
T Consensus 91 ~~~~~~~~ 98 (103)
T 2d9p_A 91 QRKEERQS 98 (103)
T ss_dssp SSCCCCCC
T ss_pred cccccCCC
Confidence 98765543
No 24
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=8.5e-22 Score=128.49 Aligned_cols=88 Identities=26% Similarity=0.360 Sum_probs=82.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC------CCccCCcE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMN------GKLLDGRV 128 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~------g~~~~g~~ 128 (157)
...++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|++|+..|| +..++|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 456789999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEEeecCCCCCCC
Q 036791 129 IFVDNVRPSRRYNT 142 (157)
Q Consensus 129 l~v~~~~~~~~~~~ 142 (157)
|+|.++.++.....
T Consensus 93 l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 93 LKVDLAVTRDEAAS 106 (111)
T ss_dssp EEEECCCCCCCCCC
T ss_pred EEEEECCCCccCCC
Confidence 99999998765443
No 25
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=3.9e-22 Score=128.55 Aligned_cols=87 Identities=24% Similarity=0.379 Sum_probs=81.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..++|+.|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 036791 135 RPSRRYN 141 (157)
Q Consensus 135 ~~~~~~~ 141 (157)
+++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2dnm_A 91 RYGRRDL 97 (103)
T ss_dssp SSCCSCC
T ss_pred CcCCCCC
Confidence 8765443
No 26
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.3e-21 Score=128.73 Aligned_cols=84 Identities=29% Similarity=0.429 Sum_probs=78.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.+++ .|.|+.|+|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 4568899999999999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred cCCCC
Q 036791 135 RPSRR 139 (157)
Q Consensus 135 ~~~~~ 139 (157)
.++..
T Consensus 94 ~~~~~ 98 (116)
T 2cqd_A 94 YLGAK 98 (116)
T ss_dssp TTTCC
T ss_pred ccCCC
Confidence 76543
No 27
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.88 E-value=8.6e-23 Score=130.13 Aligned_cols=80 Identities=20% Similarity=0.310 Sum_probs=74.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCC--eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC----ccCCcEEE
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQ--VTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGK----LLDGRVIF 130 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~--i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~----~~~g~~l~ 130 (157)
-.+|||+|||+++++++|+++|++||. +..|.+++|+.+|+++|||||+|.+.++|++|++.|||. .|+|++|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 457999999999999999999999995 678999999999999999999999999999999999997 48999999
Q ss_pred EEeecC
Q 036791 131 VDNVRP 136 (157)
Q Consensus 131 v~~~~~ 136 (157)
|+|+++
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999975
No 28
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.88 E-value=1.6e-21 Score=126.10 Aligned_cols=87 Identities=20% Similarity=0.212 Sum_probs=80.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC---cEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG---RVIFV 131 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g---~~l~v 131 (157)
...++|||+|||..+++++|+++|+.||.|..+.++.++ +++++|||||+|.+.++|++|++.||+..+.| ++|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 456789999999999999999999999999999999996 79999999999999999999999999999988 99999
Q ss_pred EeecCCCCCCC
Q 036791 132 DNVRPSRRYNT 142 (157)
Q Consensus 132 ~~~~~~~~~~~ 142 (157)
.++.++..+..
T Consensus 92 ~~a~~~~~~~~ 102 (105)
T 2dnh_A 92 KFADTDKESGP 102 (105)
T ss_dssp EESCSSCCCSC
T ss_pred EECccCcccCC
Confidence 99998765543
No 29
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.88 E-value=8.9e-23 Score=128.67 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=72.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFG--QVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
.+|||+|||+++++++|+++|++|| .|..+.++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4699999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 036791 136 PSR 138 (157)
Q Consensus 136 ~~~ 138 (157)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 764
No 30
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.88 E-value=3.6e-22 Score=133.17 Aligned_cols=87 Identities=28% Similarity=0.298 Sum_probs=81.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.|||..|+|+.|+|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 44678999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 036791 135 RPSRRYN 141 (157)
Q Consensus 135 ~~~~~~~ 141 (157)
.++....
T Consensus 100 ~~~~~~~ 106 (126)
T 3ex7_B 100 FVRGPPK 106 (126)
T ss_dssp EESSSCC
T ss_pred cCCCCCC
Confidence 8765543
No 31
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=1.8e-21 Score=125.54 Aligned_cols=85 Identities=19% Similarity=0.287 Sum_probs=79.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||+.+++++|+++|+.|| |..+.++.++.+++++|||||+|.+.++|++|+ .||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4467899999999999999999999997 999999999999999999999999999999999 89999999999999999
Q ss_pred cCCCCCC
Q 036791 135 RPSRRYN 141 (157)
Q Consensus 135 ~~~~~~~ 141 (157)
.++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2dng_A 91 EGRKQDK 97 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 9876543
No 32
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=9.6e-22 Score=126.98 Aligned_cols=86 Identities=17% Similarity=0.250 Sum_probs=80.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGK-NRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 133 (157)
.+..+|||+|||+.+++++|+++|..|| |..+.++.++.+ ++++|||||+|.+.++|++|+ .||+..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3457899999999999999999999999 999999999887 999999999999999999999 8999999999999999
Q ss_pred ecCCCCCCC
Q 036791 134 VRPSRRYNT 142 (157)
Q Consensus 134 ~~~~~~~~~ 142 (157)
+.++....+
T Consensus 91 a~~~~~~~~ 99 (104)
T 1wi8_A 91 ADQAQDKDS 99 (104)
T ss_dssp CCCCCCCCC
T ss_pred ccCCCCCCC
Confidence 998766554
No 33
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=9.2e-22 Score=125.67 Aligned_cols=86 Identities=30% Similarity=0.370 Sum_probs=79.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIG---KNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 132 (157)
+.++|||+|||+++++++|+++|++||.|..+.++.++. +++++|||||+|.+.++|++|+..||+..+.|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 456899999999999999999999999999999998876 66899999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 036791 133 NVRPSRRYN 141 (157)
Q Consensus 133 ~~~~~~~~~ 141 (157)
++.++....
T Consensus 84 ~a~~~~~~~ 92 (98)
T 2cpf_A 84 ISERATKPA 92 (98)
T ss_dssp CSSCSSCCC
T ss_pred EccCCCCCC
Confidence 998875443
No 34
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=6.5e-22 Score=129.57 Aligned_cols=87 Identities=26% Similarity=0.236 Sum_probs=81.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCee--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVT--------EATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG 126 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g 126 (157)
.+.++|||+|||+.+++++|+++|++||.|. .+.++.++.+++++|||||+|.+.++|++|++.||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4567899999999999999999999999998 69999999999999999999999999999999999999999
Q ss_pred cEEEEEeecCCCCCC
Q 036791 127 RVIFVDNVRPSRRYN 141 (157)
Q Consensus 127 ~~l~v~~~~~~~~~~ 141 (157)
+.|+|.+++++....
T Consensus 93 ~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 93 SKLKVSLARKKPPMN 107 (113)
T ss_dssp EECEEECSSCCCCST
T ss_pred CEEEEEECCCCCCCC
Confidence 999999999876544
No 35
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.5e-21 Score=123.93 Aligned_cols=82 Identities=28% Similarity=0.433 Sum_probs=78.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||..+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|+..|||..++|++|+|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 036791 135 RP 136 (157)
Q Consensus 135 ~~ 136 (157)
++
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 36
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=125.44 Aligned_cols=81 Identities=22% Similarity=0.208 Sum_probs=77.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTE--------ATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG 126 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g 126 (157)
....+|||+|||.++++++|+++|++||.|.. +.++.++.+|+++|||||+|.+.++|++|++.|||..+.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45678999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred cEEEEEeec
Q 036791 127 RVIFVDNVR 135 (157)
Q Consensus 127 ~~l~v~~~~ 135 (157)
+.|+|.+++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 37
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.87 E-value=1.5e-21 Score=134.78 Aligned_cols=86 Identities=24% Similarity=0.292 Sum_probs=81.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 036791 135 RPSRRY 140 (157)
Q Consensus 135 ~~~~~~ 140 (157)
++....
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 875543
No 38
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=127.48 Aligned_cols=84 Identities=36% Similarity=0.514 Sum_probs=80.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||..+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|+|..++|++|+|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 036791 135 RPSR 138 (157)
Q Consensus 135 ~~~~ 138 (157)
+++.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8865
No 39
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.87 E-value=1.1e-21 Score=125.02 Aligned_cols=83 Identities=24% Similarity=0.329 Sum_probs=79.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
.++|||+|||..+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 46899999999999999999999999999999999998999999999999999999999999999999999999999988
Q ss_pred CCC
Q 036791 137 SRR 139 (157)
Q Consensus 137 ~~~ 139 (157)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 653
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=1e-21 Score=129.24 Aligned_cols=83 Identities=33% Similarity=0.523 Sum_probs=75.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
.++|||+|||+++++++|+++|++||.|..+.|+.++ +.++|||||+|.+.++|++|++.|+|..|+|++|+|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4679999999999999999999999999999999985 45899999999999999999999999999999999999988
Q ss_pred CCCCC
Q 036791 137 SRRYN 141 (157)
Q Consensus 137 ~~~~~ 141 (157)
+..+.
T Consensus 83 ~~~~~ 87 (115)
T 4f25_A 83 RKERE 87 (115)
T ss_dssp CCC--
T ss_pred ccccc
Confidence 65543
No 41
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.87 E-value=8.8e-22 Score=122.49 Aligned_cols=81 Identities=25% Similarity=0.377 Sum_probs=77.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.|||..++|++|+|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35678999999999999999999999999999999999899999999999999999999999999999999999999997
Q ss_pred c
Q 036791 135 R 135 (157)
Q Consensus 135 ~ 135 (157)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 42
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.87 E-value=9.7e-22 Score=128.13 Aligned_cols=85 Identities=22% Similarity=0.284 Sum_probs=80.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||..+++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|++|+..|||..++|+.|+|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 036791 135 RPSRR 139 (157)
Q Consensus 135 ~~~~~ 139 (157)
.++..
T Consensus 104 ~~~~~ 108 (110)
T 1oo0_B 104 FVKGP 108 (110)
T ss_dssp EESSC
T ss_pred ccCCC
Confidence 87654
No 43
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=9.4e-22 Score=129.41 Aligned_cols=87 Identities=26% Similarity=0.413 Sum_probs=81.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|++|+.. ++..|+|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4457899999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred cCCCCCCC
Q 036791 135 RPSRRYNT 142 (157)
Q Consensus 135 ~~~~~~~~ 142 (157)
.++.....
T Consensus 104 ~~~~~~~~ 111 (116)
T 1x4b_A 104 VAREESGS 111 (116)
T ss_dssp SSCCCCCC
T ss_pred CCCccCCC
Confidence 98766543
No 44
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.3e-22 Score=130.86 Aligned_cols=86 Identities=27% Similarity=0.475 Sum_probs=80.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
+.++|||+|||..+++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 35789999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 036791 136 PSRRYN 141 (157)
Q Consensus 136 ~~~~~~ 141 (157)
++....
T Consensus 87 ~~~~~~ 92 (104)
T 1p1t_A 87 SEKNKE 92 (104)
T ss_dssp CTTHHH
T ss_pred Cccchh
Confidence 875543
No 45
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=122.07 Aligned_cols=84 Identities=26% Similarity=0.380 Sum_probs=78.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCC-cceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNR-SKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~-~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
..++|||+|||.++++++|+++|++||.|..+.++.++.++. ++|||||+|.+.++|++|++.|||..++|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 356899999999999999999999999999999999987766 8999999999999999999999999999999999999
Q ss_pred cCCCC
Q 036791 135 RPSRR 139 (157)
Q Consensus 135 ~~~~~ 139 (157)
.+...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 46
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.1e-21 Score=125.27 Aligned_cols=87 Identities=20% Similarity=0.284 Sum_probs=80.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhc-CCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc-cCCcEEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQ-FGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL-LDGRVIFVD 132 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~-~~g~~l~v~ 132 (157)
.+..+|||+|||+++++++|+++|+. ||.|..+.++.++ +++++|||||+|.+.++|.+|++.|++.. ++|++|+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 34578999999999999999999999 9999999999997 89999999999999999999999999999 999999999
Q ss_pred eecCCCCCCC
Q 036791 133 NVRPSRRYNT 142 (157)
Q Consensus 133 ~~~~~~~~~~ 142 (157)
++.++..+..
T Consensus 86 ~a~~~~~~~~ 95 (104)
T 2dhg_A 86 VAIPKASRVK 95 (104)
T ss_dssp BCCCCCSCCC
T ss_pred EccCCCcCCC
Confidence 9988765443
No 47
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.1e-21 Score=122.98 Aligned_cols=81 Identities=30% Similarity=0.352 Sum_probs=77.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||..+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..++|++|+|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c
Q 036791 135 R 135 (157)
Q Consensus 135 ~ 135 (157)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 48
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6e-21 Score=122.96 Aligned_cols=86 Identities=20% Similarity=0.251 Sum_probs=78.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||+.+++++|+++|++||.|..+.++.++. .++|||||+|.+.++|++|+..||+..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 4567899999999999999999999999999999998854 36899999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 036791 135 RPSRRYNT 142 (157)
Q Consensus 135 ~~~~~~~~ 142 (157)
+++.....
T Consensus 91 ~~~~~~~~ 98 (103)
T 2cqi_A 91 TTPSSQKS 98 (103)
T ss_dssp CCTTCCCC
T ss_pred CCCccccc
Confidence 98665443
No 49
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=125.79 Aligned_cols=86 Identities=28% Similarity=0.384 Sum_probs=80.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||+.+++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|++|+.. ++..|+|+.|+|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 4567899999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred cCCCCCC
Q 036791 135 RPSRRYN 141 (157)
Q Consensus 135 ~~~~~~~ 141 (157)
.++....
T Consensus 93 ~~~~~~~ 99 (105)
T 2dh8_A 93 TPRGMQP 99 (105)
T ss_dssp CCSSCCT
T ss_pred cCCCCCC
Confidence 9876544
No 50
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.86 E-value=5.5e-22 Score=127.47 Aligned_cols=82 Identities=21% Similarity=0.357 Sum_probs=78.3
Q ss_pred ccEEEEcCCCC------CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC-cEE
Q 036791 57 VSFWRCISVSF------STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG-RVI 129 (157)
Q Consensus 57 ~~~l~V~nl~~------~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g-~~l 129 (157)
.++|||+|||. .+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..+.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 56899999999 99999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEeecCCC
Q 036791 130 FVDNVRPSR 138 (157)
Q Consensus 130 ~v~~~~~~~ 138 (157)
+|.++.++.
T Consensus 86 ~V~~a~~~~ 94 (100)
T 3ns6_A 86 FLYTMKDVE 94 (100)
T ss_dssp EEEESHHHH
T ss_pred EEEECchhh
Confidence 999997653
No 51
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6.6e-21 Score=124.00 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=76.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||.++++++|+++|++||.|..+.+..+ +.++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 45678999999999999999999999999999998654 568999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 036791 135 RPSRRYNT 142 (157)
Q Consensus 135 ~~~~~~~~ 142 (157)
+++.....
T Consensus 97 ~~~~~~~~ 104 (109)
T 1x4a_A 97 RSGRGTGS 104 (109)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 98765443
No 52
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.1e-20 Score=121.70 Aligned_cols=85 Identities=27% Similarity=0.446 Sum_probs=78.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||+++++++|+++|++||.|..+.++.++. .++|||||+|.+.++|++|+..||+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4567899999999999999999999999999999998853 38999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 036791 135 RPSRRYN 141 (157)
Q Consensus 135 ~~~~~~~ 141 (157)
.++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2cq3_A 91 TARVMTN 97 (103)
T ss_dssp CSSCCCC
T ss_pred ccCCCCC
Confidence 9876544
No 53
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.86 E-value=3.5e-21 Score=120.72 Aligned_cols=82 Identities=28% Similarity=0.396 Sum_probs=77.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
+.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|+ .|||..+.|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3568999999999999999999999999999999999889999999999999999999999 899999999999999998
Q ss_pred CCC
Q 036791 136 PSR 138 (157)
Q Consensus 136 ~~~ 138 (157)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 753
No 54
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=123.71 Aligned_cols=84 Identities=20% Similarity=0.229 Sum_probs=79.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCee-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE----E
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVT-EATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV----I 129 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~----l 129 (157)
...++|||+|||+++++++|+++|++||.|. .+.++.++.+++++|||||+|.+.++|++|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3467899999999999999999999999999 9999999999999999999999999999999999999999999 9
Q ss_pred EEEeecCCC
Q 036791 130 FVDNVRPSR 138 (157)
Q Consensus 130 ~v~~~~~~~ 138 (157)
+|.++++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998754
No 55
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.86 E-value=6.9e-22 Score=132.86 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=79.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC----ccCCcE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTE--ATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGK----LLDGRV 128 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~--~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~----~~~g~~ 128 (157)
....+|||+|||+++++++|+++|.+||.|.. |.|+.++.+|+++|||||+|.+. +|.+|+..|||. .++|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 44578999999999999999999999999976 99999999999999999999999 999999999999 999999
Q ss_pred EEEEeecCCCCCC
Q 036791 129 IFVDNVRPSRRYN 141 (157)
Q Consensus 129 l~v~~~~~~~~~~ 141 (157)
|+|.+++++....
T Consensus 100 l~V~~a~~~~~~~ 112 (131)
T 2m2b_A 100 INVEFAKGSKRDM 112 (131)
T ss_dssp CCCEECCCSCCCC
T ss_pred EEEEECCCCCCCC
Confidence 9999999875543
No 56
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.86 E-value=1.8e-21 Score=130.57 Aligned_cols=85 Identities=29% Similarity=0.429 Sum_probs=80.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||+++++++|+++|++||.|..+.++.++.+++.+|||||+|.+.++|++|++.|+|..|+|++|+|.++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 036791 135 RPSRR 139 (157)
Q Consensus 135 ~~~~~ 139 (157)
.++..
T Consensus 124 ~~~~p 128 (129)
T 2kxn_B 124 ITKRP 128 (129)
T ss_dssp SSSSC
T ss_pred cCCCC
Confidence 88653
No 57
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.1e-20 Score=121.63 Aligned_cols=85 Identities=24% Similarity=0.357 Sum_probs=78.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||+.+++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|++|+. ++..++|+.|+|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 456789999999999999999999999999999999999999999999999999999999998 477899999999999
Q ss_pred cCCCCCC
Q 036791 135 RPSRRYN 141 (157)
Q Consensus 135 ~~~~~~~ 141 (157)
.++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2cqg_A 91 NSKQSQD 97 (103)
T ss_dssp CTTCCCC
T ss_pred CCCCcCC
Confidence 9876544
No 58
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.86 E-value=2.3e-21 Score=134.10 Aligned_cols=82 Identities=26% Similarity=0.301 Sum_probs=77.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFG--QVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 133 (157)
..++|||+|||+++++++|+++|+.|| .|..+.++.|+.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 346899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 036791 134 VRPS 137 (157)
Q Consensus 134 ~~~~ 137 (157)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9764
No 59
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.7e-21 Score=122.12 Aligned_cols=82 Identities=13% Similarity=0.156 Sum_probs=76.0
Q ss_pred ccccEEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLA----DAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIF 130 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~ 130 (157)
.+.++|||+|||+.+++++|+ ++|++||.|..+.++.++.+ +|||||+|.+.++|++|++.|||..++|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 355789999999999999999 99999999999999988665 88999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 036791 131 VDNVRPSRR 139 (157)
Q Consensus 131 v~~~~~~~~ 139 (157)
|.+++++..
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999987654
No 60
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.86 E-value=2.9e-21 Score=127.33 Aligned_cols=82 Identities=24% Similarity=0.263 Sum_probs=77.3
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Q 036791 54 LVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133 (157)
Q Consensus 54 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 133 (157)
..+.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.|||..++|++|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ec
Q 036791 134 VR 135 (157)
Q Consensus 134 ~~ 135 (157)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 61
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=3.7e-21 Score=122.82 Aligned_cols=84 Identities=14% Similarity=0.209 Sum_probs=78.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||+.+++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34578999999999999999999999999998888888899999999999999999999999999999999999999998
Q ss_pred cCCC
Q 036791 135 RPSR 138 (157)
Q Consensus 135 ~~~~ 138 (157)
..+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7654
No 62
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=6.2e-21 Score=131.75 Aligned_cols=87 Identities=24% Similarity=0.429 Sum_probs=81.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
....+|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|++|+..|||..+.|++|+|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 44678999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 036791 135 RPSRRYN 141 (157)
Q Consensus 135 ~~~~~~~ 141 (157)
+++....
T Consensus 148 ~~~~~~~ 154 (158)
T 2kn4_A 148 RYGRPPD 154 (158)
T ss_dssp CCSSCCC
T ss_pred CCCCCCC
Confidence 9865443
No 63
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.85 E-value=7.3e-21 Score=120.73 Aligned_cols=81 Identities=26% Similarity=0.272 Sum_probs=76.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||+.+++++|+++|++||.|..+.++.++. ++++|||||+|.+.++|++|++.||+..++|++|+|.++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 4457899999999999999999999999999999999975 999999999999999999999999999999999999998
Q ss_pred cC
Q 036791 135 RP 136 (157)
Q Consensus 135 ~~ 136 (157)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 64
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=9.6e-21 Score=121.74 Aligned_cols=86 Identities=27% Similarity=0.328 Sum_probs=77.7
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Q 036791 54 LVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133 (157)
Q Consensus 54 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 133 (157)
..+.++|||+|||+.+++++|+++|+.|+ .+.++.++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34567899999999999999999999774 677888888999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 036791 134 VRPSRRYNT 142 (157)
Q Consensus 134 ~~~~~~~~~ 142 (157)
++++..+..
T Consensus 89 a~~~~~~~~ 97 (102)
T 2fc8_A 89 AKPKGEGGS 97 (102)
T ss_dssp CCCCCSSSC
T ss_pred ecCCCCCCC
Confidence 998766544
No 65
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.85 E-value=1.1e-20 Score=122.49 Aligned_cols=81 Identities=25% Similarity=0.341 Sum_probs=76.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||+.+++++|+++|.+||.|..+.++.++ +++++|||||+|.+.++|++|++.|||..++|+.|+|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 456789999999999999999999999999999999997 8999999999999999999999999999999999999998
Q ss_pred cC
Q 036791 135 RP 136 (157)
Q Consensus 135 ~~ 136 (157)
.+
T Consensus 106 ~s 107 (107)
T 3ulh_A 106 TS 107 (107)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 66
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=4.7e-21 Score=124.95 Aligned_cols=86 Identities=29% Similarity=0.338 Sum_probs=77.4
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Q 036791 54 LVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133 (157)
Q Consensus 54 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 133 (157)
..+.++|||+|||.++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|++|+..+ +..++|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999986 5889999999999
Q ss_pred ecCCCCC
Q 036791 134 VRPSRRY 140 (157)
Q Consensus 134 ~~~~~~~ 140 (157)
+.++..+
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9987644
No 67
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.8e-22 Score=129.72 Aligned_cols=84 Identities=26% Similarity=0.374 Sum_probs=79.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||.++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|++|+ .||+..|+|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34578999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred cCCCC
Q 036791 135 RPSRR 139 (157)
Q Consensus 135 ~~~~~ 139 (157)
.++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 87543
No 68
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.85 E-value=1.2e-20 Score=119.09 Aligned_cols=83 Identities=34% Similarity=0.365 Sum_probs=77.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||..+++++|+++|++||.|..+.+..+ +++++|||||+|.+.++|++|++.||+..++|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34678999999999999999999999999999999874 7899999999999999999999999999999999999999
Q ss_pred cCCCC
Q 036791 135 RPSRR 139 (157)
Q Consensus 135 ~~~~~ 139 (157)
++...
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 88654
No 69
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.85 E-value=6.3e-21 Score=126.78 Aligned_cols=84 Identities=24% Similarity=0.348 Sum_probs=79.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||.++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|+ .|||..|+|+.|+|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34678999999999999999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred cCCCC
Q 036791 135 RPSRR 139 (157)
Q Consensus 135 ~~~~~ 139 (157)
++...
T Consensus 113 ~~~~~ 117 (124)
T 2jwn_A 113 RTNMP 117 (124)
T ss_dssp SCCCS
T ss_pred CCCCC
Confidence 87543
No 70
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.85 E-value=1.2e-20 Score=117.93 Aligned_cols=79 Identities=32% Similarity=0.476 Sum_probs=74.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++. ++..++|+.|+|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEeC
Confidence 4567899999999999999999999999999999999999999999999999999999999975 788899999999875
No 71
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=6.9e-21 Score=124.49 Aligned_cols=84 Identities=19% Similarity=0.249 Sum_probs=77.4
Q ss_pred ccccEEEEcCCCCCCCHHHHH---HHHhcCCCeeEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 036791 55 VNVSFWRCISVSFSTTKEMLA---DAFSQFGQVTEATIIMDIGKN---RSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV 128 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~---~~f~~~G~i~~~~~~~~~~~~---~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~ 128 (157)
....+|||+|||+.+++++|+ ++|++||.|..+.++.++.++ +++|||||+|.+.++|++|++.|||..|+|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 445689999999999999999 999999999999999887654 45699999999999999999999999999999
Q ss_pred EEEEeecCCC
Q 036791 129 IFVDNVRPSR 138 (157)
Q Consensus 129 l~v~~~~~~~ 138 (157)
|+|.++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999999876
No 72
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.85 E-value=9e-21 Score=132.08 Aligned_cols=87 Identities=22% Similarity=0.271 Sum_probs=79.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||+.+++++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 036791 135 RPSRRYN 141 (157)
Q Consensus 135 ~~~~~~~ 141 (157)
.++..+.
T Consensus 150 ~~~~~~~ 156 (165)
T 1rk8_A 150 FVKGPKR 156 (165)
T ss_dssp EECC---
T ss_pred cCCCCCC
Confidence 8765543
No 73
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=122.41 Aligned_cols=87 Identities=15% Similarity=0.165 Sum_probs=79.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCC-eeEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CCccCCcEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQ-VTEATII-MDIGKNRSKGYGYVTSSTEEEAQKALVDMN--GKLLDGRVIF 130 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~-i~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~ai~~l~--g~~~~g~~l~ 130 (157)
.+.++|||+|||+.+++++|+++|..||. |..+.++ .++.+++++|||||+|.+.++|++|+..|+ +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34678999999999999999999999998 9999998 788889999999999999999999999996 5899999999
Q ss_pred EEeecCCCCCC
Q 036791 131 VDNVRPSRRYN 141 (157)
Q Consensus 131 v~~~~~~~~~~ 141 (157)
|.++.++....
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99999876543
No 74
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.5e-20 Score=127.84 Aligned_cols=112 Identities=20% Similarity=0.314 Sum_probs=92.5
Q ss_pred HHHHHHhccccccCcccccccCCceeceecccccccCCCcchhhccccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEE
Q 036791 9 TRKIQQFNSYFTEDSLLSFSSKPYQVVNYFSLHCIVRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEAT 88 (157)
Q Consensus 9 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~ 88 (157)
++|+..+++..+.++.+.+... ............+|||+|||..+++++|+++|++||.|..+.
T Consensus 55 ~~A~~~l~~~~~~g~~i~v~~~----------------~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~ 118 (166)
T 3md3_A 55 NIALQTLNGKQIENNIVKINWA----------------FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGH 118 (166)
T ss_dssp HHHHHHHTTCEETTEECEEEEC----------------CCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEE
T ss_pred HHHHHHcCCCccCCCeeEEEEc----------------CCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEE
Confidence 4566677777777666654321 000111223456899999999999999999999999999999
Q ss_pred EeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 89 IIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 89 ~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
++.++.+|.++|||||+|.+.++|.+|+..|||..++|++|+|.|+++
T Consensus 119 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 119 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 999999999999999999999999999999999999999999999864
No 75
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-21 Score=124.58 Aligned_cols=83 Identities=19% Similarity=0.248 Sum_probs=75.6
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 036791 54 LVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDI-GKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132 (157)
Q Consensus 54 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~-~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 132 (157)
....++|||+|||.++++++|+++|+.|| |..+.++.++ .+|+++|||||+|.+.++|.+|+ .|+|..++|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34568899999999999999999999999 9999999998 58999999999999999999999 899999999999999
Q ss_pred eecCCC
Q 036791 133 NVRPSR 138 (157)
Q Consensus 133 ~~~~~~ 138 (157)
+++++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998764
No 76
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=120.37 Aligned_cols=82 Identities=23% Similarity=0.355 Sum_probs=74.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||+++++++|+++|.+||.| .++.+ .+++.+|||||+|.+.++|++|+..||+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 456789999999999999999999999977 55665 67899999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 036791 135 RPSRRY 140 (157)
Q Consensus 135 ~~~~~~ 140 (157)
+++...
T Consensus 89 ~~~~~~ 94 (101)
T 2fc9_A 89 GPRGSP 94 (101)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987543
No 77
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=8.8e-23 Score=134.41 Aligned_cols=93 Identities=20% Similarity=0.200 Sum_probs=84.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTE--------ATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG 126 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g 126 (157)
.+.++|||+|||..+++++|+++|++||.|.. +.++.++.+++++|||||+|.+.++|++|+..||+..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34578999999999999999999999999998 8999998899999999999999999999999999999999
Q ss_pred cEEEEEeecCCCCCCCCCCCC
Q 036791 127 RVIFVDNVRPSRRYNTDASLA 147 (157)
Q Consensus 127 ~~l~v~~~~~~~~~~~~~~~~ 147 (157)
++|+|.+++++..+.+++.++
T Consensus 85 ~~l~V~~a~~~~~~~~ggg~~ 105 (116)
T 2lcw_A 85 NPIKVSFATRRADFNRGGGNG 105 (116)
Confidence 999999999887765544333
No 78
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.6e-21 Score=122.33 Aligned_cols=80 Identities=15% Similarity=0.075 Sum_probs=75.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
....+|||+|||+++++++|+++|++||.|..+.++.++. |+++|||||+|.+.++|++|+. +++..++|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3457899999999999999999999999999999999977 9999999999999999999999 8999999999999987
Q ss_pred cC
Q 036791 135 RP 136 (157)
Q Consensus 135 ~~ 136 (157)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 79
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.84 E-value=4.2e-21 Score=116.77 Aligned_cols=75 Identities=25% Similarity=0.395 Sum_probs=72.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 59 FWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 59 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
+|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++ +++..++|++|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998899999999999999999999998 8999999999999875
No 80
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.84 E-value=6.4e-21 Score=120.99 Aligned_cols=81 Identities=15% Similarity=0.262 Sum_probs=75.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..++|||+|||+++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..++|++|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 35789999999999999999999999999989899988999999999999999999999999999999999999999986
Q ss_pred C
Q 036791 136 P 136 (157)
Q Consensus 136 ~ 136 (157)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 5
No 81
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.84 E-value=4.3e-21 Score=129.71 Aligned_cols=87 Identities=24% Similarity=0.429 Sum_probs=81.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|++|+..|||..|.|++|+|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 44678999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 036791 135 RPSRRYN 141 (157)
Q Consensus 135 ~~~~~~~ 141 (157)
+++....
T Consensus 125 ~~~~~~~ 131 (135)
T 2lea_A 125 RYGRPPD 131 (135)
T ss_dssp CCCCCCT
T ss_pred CCCCCCc
Confidence 8865443
No 82
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.9e-20 Score=116.53 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=76.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
....+|||+|||+++++++|+++|+.| .|..+.++.+ .+|+++|||||+|.+.++|++|+. ||+..++|+.|+|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 345789999999999999999999999 9999999999 789999999999999999999999 9999999999999999
Q ss_pred cCCC
Q 036791 135 RPSR 138 (157)
Q Consensus 135 ~~~~ 138 (157)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8864
No 83
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-21 Score=121.41 Aligned_cols=81 Identities=21% Similarity=0.295 Sum_probs=75.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.|||..++|+.|++.+.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999998877655
Q ss_pred C
Q 036791 136 P 136 (157)
Q Consensus 136 ~ 136 (157)
+
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 84
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=5e-20 Score=115.87 Aligned_cols=79 Identities=23% Similarity=0.338 Sum_probs=72.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||.++++++|+++|++||.|..+.++ +|||||+|.+.++|++|++.||+..++|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 456789999999999999999999999999999886 579999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 036791 135 RPSRRYN 141 (157)
Q Consensus 135 ~~~~~~~ 141 (157)
+++....
T Consensus 78 ~~~~~~~ 84 (90)
T 2dnq_A 78 KNKSKAS 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9876544
No 85
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.84 E-value=5.4e-20 Score=122.32 Aligned_cols=84 Identities=23% Similarity=0.294 Sum_probs=79.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||..+++++|+++|++||.|..+.++.++ +|+++|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 456789999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 036791 135 RPSRR 139 (157)
Q Consensus 135 ~~~~~ 139 (157)
.+...
T Consensus 112 ~~~~~ 116 (124)
T 2kt5_A 112 ASQID 116 (124)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 87543
No 86
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6e-20 Score=120.31 Aligned_cols=83 Identities=20% Similarity=0.364 Sum_probs=77.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc--------CC
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL--------DG 126 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~--------~g 126 (157)
.+.++|||+|||+.+++++|+++|+.||.|..+.++.++ +++++|||||+|.+.++|++|+..|||..+ .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 455789999999999999999999999999999999997 899999999999999999999999999999 57
Q ss_pred cEEEEEeecCCC
Q 036791 127 RVIFVDNVRPSR 138 (157)
Q Consensus 127 ~~l~v~~~~~~~ 138 (157)
++|.|.++.++.
T Consensus 102 ~~l~v~~a~p~~ 113 (114)
T 1x5o_A 102 EPLLCKFSGPSS 113 (114)
T ss_dssp SCBEEEECCCSC
T ss_pred CceeEEccCCCC
Confidence 889999998753
No 87
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.83 E-value=5.2e-20 Score=118.64 Aligned_cols=81 Identities=28% Similarity=0.463 Sum_probs=73.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||+++++++|+++|.+||.|..+.++ ++||||+|.+.++|++|++.||+..|.|+.|+|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 356789999999999999999999999999999886 358999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 036791 135 RPSRRYNTD 143 (157)
Q Consensus 135 ~~~~~~~~~ 143 (157)
+++......
T Consensus 81 ~~~~~~~~~ 89 (103)
T 2dgu_A 81 KPPDQKRKE 89 (103)
T ss_dssp CCCCCCCCC
T ss_pred CCCcccchh
Confidence 887665443
No 88
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.3e-20 Score=120.29 Aligned_cols=82 Identities=15% Similarity=0.115 Sum_probs=75.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
....+|||+|||+++++++|+++|+.|| +..+.++.++ +++++|||||+|.+.++|++||+ +|+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 4457899999999999999999999999 4599999997 89999999999999999999995 7999999999999998
Q ss_pred cCCCC
Q 036791 135 RPSRR 139 (157)
Q Consensus 135 ~~~~~ 139 (157)
.+...
T Consensus 90 ~~~~~ 94 (102)
T 1wez_A 90 STAGT 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 89
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-20 Score=121.24 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=72.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--CccCCcEEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNG--KLLDGRVIFVD 132 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g--~~~~g~~l~v~ 132 (157)
....+|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.|++ ..+.|++|+|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34678999999999999999999999999999999865 69999999999999999998864 68999999999
Q ss_pred eecCCCCCC
Q 036791 133 NVRPSRRYN 141 (157)
Q Consensus 133 ~~~~~~~~~ 141 (157)
+++++....
T Consensus 88 ~A~~~~~~~ 96 (105)
T 1sjq_A 88 FSNHKELKT 96 (105)
T ss_dssp CCSSSSCCC
T ss_pred EcCCCCCCc
Confidence 998865444
No 90
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=120.13 Aligned_cols=80 Identities=20% Similarity=0.268 Sum_probs=73.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCC
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPS 137 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~ 137 (157)
++|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|++.|++..++|+.|+|.+++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999876 6899999999999999999999999999999999999987
Q ss_pred CCCCC
Q 036791 138 RRYNT 142 (157)
Q Consensus 138 ~~~~~ 142 (157)
.....
T Consensus 76 ~~~~~ 80 (101)
T 2hvz_A 76 PRRSR 80 (101)
T ss_dssp CCSSC
T ss_pred CCccc
Confidence 65433
No 91
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.83 E-value=7.8e-20 Score=129.80 Aligned_cols=130 Identities=14% Similarity=0.202 Sum_probs=98.0
Q ss_pred HHHHHHhccccccCcccccccC-Cceecee-cccccccCCCcchhhccccccEEEEcCCCCCCCHHHHHHHHhcCCCeeE
Q 036791 9 TRKIQQFNSYFTEDSLLSFSSK-PYQVVNY-FSLHCIVRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTE 86 (157)
Q Consensus 9 ~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~ 86 (157)
++|+ ++|+..+.++.+.+... .+....- ........+............+|||+|||..+++++|+++|++||.|..
T Consensus 65 ~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~ 143 (198)
T 2yh0_A 65 TQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKA 143 (198)
T ss_dssp HHHG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEE
T ss_pred HHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccE
Confidence 4556 78888888888766531 1100000 0000011111111112245578999999999999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCCCC
Q 036791 87 ATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSRR 139 (157)
Q Consensus 87 ~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~~~ 139 (157)
+.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.++.++..
T Consensus 144 ~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 144 FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999988999999999999999999999999999999999999999998754
No 92
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.83 E-value=5.1e-20 Score=132.43 Aligned_cols=122 Identities=20% Similarity=0.259 Sum_probs=94.5
Q ss_pred HHHHHHhccccccCcccccccCCceeceecccccccCCC-cchhhccccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEE
Q 036791 9 TRKIQQFNSYFTEDSLLSFSSKPYQVVNYFSLHCIVRPS-SDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEA 87 (157)
Q Consensus 9 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~ 87 (157)
++|++.+++..+.++.+.+.... ......+. ...........+|||+|||..+++++|+++|++||.|..+
T Consensus 84 ~~A~~~l~~~~~~g~~l~v~~~~--------~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v 155 (216)
T 2qfj_A 84 QLALEQMNSVMLGGRNIKVGRPS--------NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSA 155 (216)
T ss_dssp HHHHHHHSSCCCC-CCCEEECCS--------CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEE
T ss_pred HHHHHHccCCeeCCeeEEEecCC--------CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEE
Confidence 55666677777777776553200 00000000 0011122345789999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCCC
Q 036791 88 TIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSR 138 (157)
Q Consensus 88 ~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~~ 138 (157)
.++.++.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|.++.++.
T Consensus 156 ~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 156 TLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred EEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 999998899999999999999999999999999999999999999998864
No 93
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.9e-20 Score=121.98 Aligned_cols=84 Identities=26% Similarity=0.451 Sum_probs=77.1
Q ss_pred hccccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q 036791 52 MQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131 (157)
Q Consensus 52 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v 131 (157)
......++|||+|||.++++++|+++|++||.|..+.++.++ +.++|||||+|.+.++|++|++.|||..++|+.|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 333556889999999999999999999999999999999884 458999999999999999999999999999999999
Q ss_pred EeecCC
Q 036791 132 DNVRPS 137 (157)
Q Consensus 132 ~~~~~~ 137 (157)
.+++++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999875
No 94
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.83 E-value=2.6e-21 Score=121.69 Aligned_cols=80 Identities=28% Similarity=0.480 Sum_probs=74.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCC
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPS 137 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~ 137 (157)
++|||+|||.++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.+ |.+|+..|||..++|++|+|.++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999999999999999999999 99999999999999999999999875
Q ss_pred C
Q 036791 138 R 138 (157)
Q Consensus 138 ~ 138 (157)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 95
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=2.8e-20 Score=127.55 Aligned_cols=123 Identities=12% Similarity=0.117 Sum_probs=92.1
Q ss_pred HHHHHHHh-ccccccCcccccccCCceeceecccccccCCCcchhhccccccEEEEcCCCCCCCHHHHHHHHhcCCCeeE
Q 036791 8 QTRKIQQF-NSYFTEDSLLSFSSKPYQVVNYFSLHCIVRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTE 86 (157)
Q Consensus 8 ~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~ 86 (157)
-++|++++ |+..+.+ .+.+....-..... ..................++|||+|||+.+++++|+++|++||.|..
T Consensus 26 A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~ 102 (150)
T 2i2y_A 26 AEKVFKQYANDNGVDG-EWTYDDATKTFTVT--EGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRS 102 (150)
T ss_dssp HTTTHHHHHHHHTCCC-EEEEETTTTEEEEE--CSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEE
T ss_pred HHHHHHHHhcCCCCCC-ceecccccCccccc--cccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEE
Confidence 35677788 8888888 66544311111100 00011111122223345679999999999999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCCC
Q 036791 87 ATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSR 138 (157)
Q Consensus 87 ~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~~ 138 (157)
+.++.+ ++|||||+|.+.++|.+|+..|||..++|++|+|.+++++.
T Consensus 103 v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 103 VWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp EEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred EEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999875 57999999999999999999999999999999999998864
No 96
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.8e-21 Score=124.43 Aligned_cols=88 Identities=19% Similarity=0.255 Sum_probs=75.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||..+++++|+++|..||.|..+.+..+..+++++|||||+|.+.++|++|++.|||..++|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 34578999999999999999999999999843322222236889999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 036791 135 RPSRRYNT 142 (157)
Q Consensus 135 ~~~~~~~~ 142 (157)
+++..+..
T Consensus 103 ~~~~~~~~ 110 (115)
T 2cpx_A 103 KNKKQRSS 110 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCCCC
Confidence 98765443
No 97
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.83 E-value=4.1e-20 Score=125.01 Aligned_cols=80 Identities=25% Similarity=0.371 Sum_probs=76.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||..+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.|||..+.|++|+|++|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999875
No 98
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-19 Score=117.36 Aligned_cols=79 Identities=19% Similarity=0.139 Sum_probs=73.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC-----cEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG-----RVI 129 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g-----~~l 129 (157)
....+|||+|||+++++++|+++|.+||.|..+.++.+ |||||+|.+.++|++||+.||+..|+| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 34678999999999999999999999999999999875 899999999999999999999999999 999
Q ss_pred EEEeecCCCCC
Q 036791 130 FVDNVRPSRRY 140 (157)
Q Consensus 130 ~v~~~~~~~~~ 140 (157)
+|.++.++...
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999986543
No 99
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=8.2e-21 Score=115.94 Aligned_cols=76 Identities=30% Similarity=0.393 Sum_probs=72.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.++ ..++|++|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 369999999999999999999999999999999998899999999999999999999999998 9999999999986
No 100
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.83 E-value=2.4e-21 Score=124.42 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=76.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
....+|||+|||+++++++|+++|+.||.|.. .++.++.+++++|||||+|.+.++|++|++ ||+..+.|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34678999999999999999999999998887 667777788999999999999999999999 9999999999999999
Q ss_pred cCCCCC
Q 036791 135 RPSRRY 140 (157)
Q Consensus 135 ~~~~~~ 140 (157)
.++..+
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 987544
No 101
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.82 E-value=3.1e-20 Score=120.20 Aligned_cols=82 Identities=21% Similarity=0.254 Sum_probs=75.2
Q ss_pred cccEEEEcCCCCCC------CHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCc-E
Q 036791 56 NVSFWRCISVSFST------TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR-V 128 (157)
Q Consensus 56 ~~~~l~V~nl~~~~------~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~-~ 128 (157)
..++|||+|||+.+ ++++|+++|++||.|..+.++ +.+|+++|||||+|.+.++|.+|+..|||..+.|+ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 35789999999999 789999999999999999887 46799999999999999999999999999999998 9
Q ss_pred EEEEeecCCCC
Q 036791 129 IFVDNVRPSRR 139 (157)
Q Consensus 129 l~v~~~~~~~~ 139 (157)
|+|.++.....
T Consensus 92 l~V~~a~~~~k 102 (105)
T 2nlw_A 92 FRVNLFTDFDK 102 (105)
T ss_dssp EEEECSCCCCC
T ss_pred EEEEEcchHhh
Confidence 99999986543
No 102
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.82 E-value=5.7e-20 Score=117.63 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=71.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc--cCCcEEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL--LDGRVIFVD 132 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~--~~g~~l~v~ 132 (157)
.+.++|||+|||+.+++++|+++|++||.|..+.+++ .+|+|||+|.+.++|.+|++.|++.. +.|++|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 4567899999999999999999999999999998875 36899999999999999999999876 789999999
Q ss_pred eecCCC
Q 036791 133 NVRPSR 138 (157)
Q Consensus 133 ~~~~~~ 138 (157)
++++++
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998764
No 103
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-19 Score=116.07 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=72.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCCccCCcEEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDM--NGKLLDGRVIFVD 132 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l--~g~~~~g~~l~v~ 132 (157)
.+.++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|++.| ++..+.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 45578999999999999999999999999999988764 799999999999999999987 4677999999999
Q ss_pred eecCCCCCC
Q 036791 133 NVRPSRRYN 141 (157)
Q Consensus 133 ~~~~~~~~~ 141 (157)
+++++.-..
T Consensus 87 ~a~~~~~~~ 95 (101)
T 2cq1_A 87 YSNHKELKT 95 (101)
T ss_dssp ECSCSSCCC
T ss_pred EcCcccCcC
Confidence 999765443
No 104
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.7e-19 Score=113.87 Aligned_cols=80 Identities=20% Similarity=0.322 Sum_probs=72.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||+.+++++|+++|++||.|..+.+++ +||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4567899999999999999999999999999998863 39999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 036791 135 RPSRRYNT 142 (157)
Q Consensus 135 ~~~~~~~~ 142 (157)
+++.....
T Consensus 80 ~~~~~~~~ 87 (92)
T 2dgt_A 80 TSRLRTAS 87 (92)
T ss_dssp SCCCSCCC
T ss_pred cCCCCCCC
Confidence 98765443
No 105
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.82 E-value=2.6e-20 Score=136.25 Aligned_cols=81 Identities=21% Similarity=0.263 Sum_probs=76.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFG--QVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 133 (157)
..++|||+||++++++++|+++|++|| .|..|.|+.++.+++++|||||+|.+.++|++||+.||+..|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 036791 134 VRP 136 (157)
Q Consensus 134 ~~~ 136 (157)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 753
No 106
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=118.35 Aligned_cols=81 Identities=28% Similarity=0.450 Sum_probs=74.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||..+++++|+++|+.||.|..+.++.+ +|||||+|.+.++|++|+..|+|..+.|++|+|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 45678999999999999999999999999999999875 689999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 036791 135 RPSRRYN 141 (157)
Q Consensus 135 ~~~~~~~ 141 (157)
+++....
T Consensus 97 ~~~~~~~ 103 (109)
T 1x4g_A 97 KESPDMT 103 (109)
T ss_dssp CCCCSSC
T ss_pred CCCCCCC
Confidence 9876443
No 107
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=115.52 Aligned_cols=79 Identities=20% Similarity=0.266 Sum_probs=72.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC--CcEEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD--GRVIFVD 132 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~--g~~l~v~ 132 (157)
.+.++|||+|||.++++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|++.||+..+. |+.|+|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 34578999999999999999999999999999988653 689999999999999999999999999 9999999
Q ss_pred eecCCCC
Q 036791 133 NVRPSRR 139 (157)
Q Consensus 133 ~~~~~~~ 139 (157)
+++++..
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9998754
No 108
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.82 E-value=1.5e-19 Score=128.11 Aligned_cols=90 Identities=19% Similarity=0.311 Sum_probs=75.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
...+|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|.+|+.. ++..++|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 457899999999999999999999999999999999988999999999999999999999986 7999999999999999
Q ss_pred CCCCCCCCCCC
Q 036791 136 PSRRYNTDASL 146 (157)
Q Consensus 136 ~~~~~~~~~~~ 146 (157)
++.........
T Consensus 182 ~k~~~~~~~~~ 192 (196)
T 1l3k_A 182 SKQEMASASSS 192 (196)
T ss_dssp -----------
T ss_pred ChhHhcccccc
Confidence 98776554433
No 109
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=116.84 Aligned_cols=82 Identities=27% Similarity=0.321 Sum_probs=75.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTE-ATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 133 (157)
.+..+|||+|||+++++++|+++|..||.|.. +.++.+ .+|+++|||||+|.+.++|++|+.. ++..++|+.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 34578999999999999999999999999987 888888 7899999999999999999999997 99999999999999
Q ss_pred ecCCC
Q 036791 134 VRPSR 138 (157)
Q Consensus 134 ~~~~~ 138 (157)
+.++.
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87654
No 110
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=115.69 Aligned_cols=81 Identities=23% Similarity=0.291 Sum_probs=74.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 45678999999999999999999999999999988754 689999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 036791 135 RPSRRYN 141 (157)
Q Consensus 135 ~~~~~~~ 141 (157)
+++....
T Consensus 87 ~~~~~~~ 93 (99)
T 2cpj_A 87 CHSASLT 93 (99)
T ss_dssp SCCSCCC
T ss_pred CCCCCCC
Confidence 9865443
No 111
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.82 E-value=9e-20 Score=118.68 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=72.2
Q ss_pred ccccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 036791 53 QLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132 (157)
Q Consensus 53 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 132 (157)
.....++|||+|||.++++++|+++|++||.|..+.++ +|||||+|.+.++|++|++.|||..++|+.|+|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 33556899999999999999999999999999999887 6899999999999999999999999999999999
Q ss_pred eecCCCCC
Q 036791 133 NVRPSRRY 140 (157)
Q Consensus 133 ~~~~~~~~ 140 (157)
+++++..+
T Consensus 99 ~a~~~~~r 106 (108)
T 2jvo_A 99 YSKLPAKR 106 (108)
T ss_dssp SCSCCC--
T ss_pred EecCCCCC
Confidence 99886543
No 112
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-19 Score=119.02 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=73.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--CccCCcEEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNG--KLLDGRVIFVD 132 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g--~~~~g~~l~v~ 132 (157)
.+.++|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|++.|++ ..+.|++|+|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 44678999999999999999999999999999999875 69999999999999999999874 68999999999
Q ss_pred eecCCCCCC
Q 036791 133 NVRPSRRYN 141 (157)
Q Consensus 133 ~~~~~~~~~ 141 (157)
+++++.-..
T Consensus 103 ~a~~k~~~~ 111 (119)
T 2ad9_A 103 FSNHKELKT 111 (119)
T ss_dssp ECSSSSCCC
T ss_pred EccCCCCCc
Confidence 998876544
No 113
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.82 E-value=4.4e-20 Score=114.76 Aligned_cols=73 Identities=21% Similarity=0.253 Sum_probs=68.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..-|||+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.+.++|++|++.||+..++|++|+|.++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 45699999999999999999999999999999865 58999999999999999999999999999999999984
No 114
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2e-19 Score=116.32 Aligned_cols=80 Identities=14% Similarity=0.141 Sum_probs=71.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC--ccCCcEEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGK--LLDGRVIFVD 132 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~--~~~g~~l~v~ 132 (157)
.+..+|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|++.|++. .+.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34578999999999999999999999999999988753 689999999999999999988754 5899999999
Q ss_pred eecCCCCC
Q 036791 133 NVRPSRRY 140 (157)
Q Consensus 133 ~~~~~~~~ 140 (157)
+++++...
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99876543
No 115
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=5.2e-20 Score=118.55 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=70.5
Q ss_pred cccEEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC--ccCCcEEEEE
Q 036791 56 NVSFWRCISVSF-STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGK--LLDGRVIFVD 132 (157)
Q Consensus 56 ~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~--~~~g~~l~v~ 132 (157)
+..+|||+|||+ .+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|++.|++. .|.|++|+|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 467899999999 9999999999999999999999765 479999999999999999999864 5999999999
Q ss_pred eecCCCC
Q 036791 133 NVRPSRR 139 (157)
Q Consensus 133 ~~~~~~~ 139 (157)
++++...
T Consensus 88 ~a~~~~~ 94 (102)
T 1x4d_A 88 LSQKYKR 94 (102)
T ss_dssp EECCCTT
T ss_pred ECCCCCC
Confidence 9987543
No 116
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=8e-20 Score=122.18 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=73.0
Q ss_pred cccEEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q 036791 56 NVSFWRCISVSFSTTKEMLA----DAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v 131 (157)
+..+|||+|||+.+++++|+ ++|++||.|..|.+.. +++++|||||+|.+.++|.+|+..|||..+.|++|+|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 45789999999999999876 6999999999887743 5889999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 036791 132 DNVRPSRR 139 (157)
Q Consensus 132 ~~~~~~~~ 139 (157)
.|++++..
T Consensus 105 ~~a~~~~~ 112 (127)
T 2a3j_A 105 TFSETPQS 112 (127)
T ss_dssp EECCCCCH
T ss_pred EEccCcch
Confidence 99987643
No 117
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.81 E-value=1.4e-19 Score=130.73 Aligned_cols=82 Identities=34% Similarity=0.553 Sum_probs=75.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
...+|||+|||+.+++++|+++|++||.|..+.|+.++ +.++|||||+|.+.++|++|++.|||..|+|++|+|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45689999999999999999999999999999999884 4579999999999999999999999999999999999998
Q ss_pred CCCC
Q 036791 136 PSRR 139 (157)
Q Consensus 136 ~~~~ 139 (157)
++.+
T Consensus 180 ~~~~ 183 (213)
T 4f02_A 180 SRKE 183 (213)
T ss_dssp CHHH
T ss_pred CCcc
Confidence 7643
No 118
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.81 E-value=2.8e-20 Score=122.91 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=75.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQ---VTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v 131 (157)
....+|||+|||+++++++|+++|+.||. |..+.++.++. |+++|||||+|.+.++|++|++ +|+..|+|+.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 34578999999999999999999999998 89999999976 9999999999999999999999 9999999999999
Q ss_pred EeecCC
Q 036791 132 DNVRPS 137 (157)
Q Consensus 132 ~~~~~~ 137 (157)
.++.++
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 999764
No 119
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.4e-19 Score=113.39 Aligned_cols=78 Identities=31% Similarity=0.494 Sum_probs=71.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcC--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQF--GQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 132 (157)
.+.++|||+|||+.+++++|+++|++| |.|..+.+. +|||||+|.+.++|++|+..|||..++|++|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 456789999999999999999999999 899888764 5799999999999999999999999999999999
Q ss_pred eecCCCCC
Q 036791 133 NVRPSRRY 140 (157)
Q Consensus 133 ~~~~~~~~ 140 (157)
+++++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2cpd_A 85 LAKPVDKD 92 (99)
T ss_dssp CCCCCCCC
T ss_pred ECCCCCCC
Confidence 99987543
No 120
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=7.2e-20 Score=116.37 Aligned_cols=81 Identities=21% Similarity=0.292 Sum_probs=73.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||..+++++|+++|+.||.|..+ ..+++++|||||+|.+.++|.+|+..|+|..++|+.|+|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 356789999999999999999999999988666 256889999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 036791 135 RPSRRY 140 (157)
Q Consensus 135 ~~~~~~ 140 (157)
.++...
T Consensus 89 ~~~~~~ 94 (96)
T 1fjc_A 89 GEKGGT 94 (96)
T ss_dssp SSSCCC
T ss_pred CCCCCC
Confidence 886543
No 121
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3e-20 Score=121.99 Aligned_cols=82 Identities=21% Similarity=0.208 Sum_probs=76.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCe-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQV-TEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i-~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 133 (157)
.+..+|||+|||+++++++|+++|+.||.| ..+.++.++ +|+++|||||+|.+.++|++||+. |+..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 345789999999999999999999999999 889999997 899999999999999999999997 99999999999999
Q ss_pred ecCCC
Q 036791 134 VRPSR 138 (157)
Q Consensus 134 ~~~~~ 138 (157)
+.++.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98654
No 122
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.2e-19 Score=115.57 Aligned_cols=79 Identities=15% Similarity=0.245 Sum_probs=71.1
Q ss_pred ccccEEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Q 036791 55 VNVSFWRCISVSF-STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133 (157)
Q Consensus 55 ~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 133 (157)
.+.++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|||..+.|++|+|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4567899999998 99999999999999999999884 68999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 036791 134 VRPSRRYN 141 (157)
Q Consensus 134 ~~~~~~~~ 141 (157)
++++....
T Consensus 80 a~~~~~~~ 87 (96)
T 2kvi_A 80 SSSNARPQ 87 (96)
T ss_dssp EECCCC--
T ss_pred cCcCCCCC
Confidence 98765443
No 123
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=114.67 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=71.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||+.+++++|+++|+.||.|. +.++. ++++|||||+|.+.++|++|++.|||..++|+.|+|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3457899999999999999999999999996 66654 367899999999999999999999999999999999999
Q ss_pred cCCCC
Q 036791 135 RPSRR 139 (157)
Q Consensus 135 ~~~~~ 139 (157)
+++..
T Consensus 92 ~~~~~ 96 (97)
T 2e5j_A 92 RQQRD 96 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88653
No 124
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.81 E-value=8.2e-20 Score=116.25 Aligned_cols=82 Identities=17% Similarity=0.201 Sum_probs=75.2
Q ss_pred ccccEEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLA----DAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIF 130 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~ 130 (157)
.+.++|||+|||.++++++|+ ++|++||.|..+.+.. +|+++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456789999999999999999 9999999999998864 478899999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 036791 131 VDNVRPSRR 139 (157)
Q Consensus 131 v~~~~~~~~ 139 (157)
|.+++++..
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999988653
No 125
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.81 E-value=5.5e-20 Score=124.30 Aligned_cols=81 Identities=16% Similarity=0.151 Sum_probs=75.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQ---VTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v 131 (157)
....+|||+|||+++++++|+++|+.||. |..+.++.++. |+++|||||+|.+.++|++|++ +|+..|+|+.|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 34578999999999999999999999999 88999999977 9999999999999999999999 9999999999999
Q ss_pred EeecCC
Q 036791 132 DNVRPS 137 (157)
Q Consensus 132 ~~~~~~ 137 (157)
.++.++
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 998654
No 126
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=114.70 Aligned_cols=80 Identities=18% Similarity=0.247 Sum_probs=70.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCC-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-CccCCcEEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQ-VTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNG-KLLDGRVIFVD 132 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g-~~~~g~~l~v~ 132 (157)
...++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..++|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 34578999999999999999999999999 5555542 478999999999999999999999 99999999999
Q ss_pred eecCCCCCC
Q 036791 133 NVRPSRRYN 141 (157)
Q Consensus 133 ~~~~~~~~~ 141 (157)
+++++..+.
T Consensus 79 ~a~~~~~~~ 87 (93)
T 2cqh_A 79 YSVSKKLRS 87 (93)
T ss_dssp ECCCCCCCC
T ss_pred EccCccccC
Confidence 999876543
No 127
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.81 E-value=8.7e-20 Score=119.25 Aligned_cols=79 Identities=18% Similarity=0.098 Sum_probs=70.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFG-QVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...+|||+|||+++++++|+++|++|| .|..+.+.. .+++|||||+|.+.++|++|++.|||..++|+.|+|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 457899999999999999999999999 899988753 347899999999999999999999999999999999999
Q ss_pred cCCC
Q 036791 135 RPSR 138 (157)
Q Consensus 135 ~~~~ 138 (157)
+.+.
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7543
No 128
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.80 E-value=3.9e-19 Score=113.46 Aligned_cols=77 Identities=14% Similarity=0.242 Sum_probs=71.1
Q ss_pred cccccEEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 036791 54 LVNVSFWRCISVSF-STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132 (157)
Q Consensus 54 ~~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 132 (157)
....++|||+|||+ ++++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|+..|||..++|+.|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999998 99999999999999999999883 6899999999999999999999999999999999
Q ss_pred eecCCC
Q 036791 133 NVRPSR 138 (157)
Q Consensus 133 ~~~~~~ 138 (157)
+++++.
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 998754
No 129
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-20 Score=123.80 Aligned_cols=82 Identities=17% Similarity=0.222 Sum_probs=75.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
....+|||+|||+++++++|+++|..||.|..+.++.+..+|+++|||||+|.+.++|++||. ||+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345789999999999999999999999999887677777889999999999999999999999 9999999999999999
Q ss_pred cCC
Q 036791 135 RPS 137 (157)
Q Consensus 135 ~~~ 137 (157)
.++
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 764
No 130
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.80 E-value=7.1e-20 Score=117.71 Aligned_cols=82 Identities=20% Similarity=0.282 Sum_probs=75.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..++|||+|||+.+++++|+++|+.||.|..+.++.++ +|+++|||||+|.+.++|++|+. ++..++|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45789999999999999999999999999999999997 89999999999999999999998 8999999999999998
Q ss_pred CCCCC
Q 036791 136 PSRRY 140 (157)
Q Consensus 136 ~~~~~ 140 (157)
++...
T Consensus 85 ~~~~~ 89 (102)
T 2xs2_A 85 RKQNL 89 (102)
T ss_dssp ECC--
T ss_pred cCcch
Confidence 76544
No 131
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.2e-19 Score=112.12 Aligned_cols=78 Identities=26% Similarity=0.339 Sum_probs=71.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||+.+++++|+++|++||.|..+.+++ +||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 4567899999999999999999999999999998874 38999999999999999999999999999999999
Q ss_pred cCCCCC
Q 036791 135 RPSRRY 140 (157)
Q Consensus 135 ~~~~~~ 140 (157)
.++...
T Consensus 79 ~~~~~~ 84 (90)
T 2dnp_A 79 TKGQKK 84 (90)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 886543
No 132
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.5e-19 Score=115.99 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=70.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..++|||+|||.++++++|+++|++||.|..+.+. +++|||||+|.+.++|++|+..|||..++|+.|+|.+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 45789999999999999999999999999999887 357999999999999999999999999999999999998
Q ss_pred CC
Q 036791 136 PS 137 (157)
Q Consensus 136 ~~ 137 (157)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 133
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.80 E-value=5.6e-20 Score=113.49 Aligned_cols=72 Identities=24% Similarity=0.324 Sum_probs=67.1
Q ss_pred cEEEEcCCCCCC------CHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCc-EEE
Q 036791 58 SFWRCISVSFST------TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR-VIF 130 (157)
Q Consensus 58 ~~l~V~nl~~~~------~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~-~l~ 130 (157)
++|||+|||..+ ++++|+++|++||.|..+.++ +.+|+++|||||+|.+.++|++|++.|||..++|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 579999999999 679999999999999999887 46899999999999999999999999999999999 887
Q ss_pred E
Q 036791 131 V 131 (157)
Q Consensus 131 v 131 (157)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 134
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.80 E-value=4.2e-19 Score=123.40 Aligned_cols=79 Identities=15% Similarity=0.273 Sum_probs=76.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..+|||+|||..+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|||..++|++|+|+++.
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 5789999999999999999999999999999999998899999999999999999999999999999999999999873
No 135
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.80 E-value=2.8e-20 Score=113.07 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=71.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 59 FWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 59 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
+|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++. ++..+.|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999995 899999999999875
No 136
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.80 E-value=2.7e-19 Score=117.35 Aligned_cols=80 Identities=18% Similarity=0.268 Sum_probs=74.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..++|||+|||..+++++|+++|+.||.|..+.++.+ +.++|||||+|.+.++|.+|+..|||..++|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4568999999999999999999999999999999875 5569999999999999999999999999999999999998
Q ss_pred CCC
Q 036791 136 PSR 138 (157)
Q Consensus 136 ~~~ 138 (157)
++.
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 644
No 137
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=112.54 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=70.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..++|||+|||+++++++|+++|+.||.|..| +.++.+++ ||||+|.+.++|++|+. |++..++|+.|+|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45689999999999999999999999999987 66666665 99999999999999999 99999999999999887
Q ss_pred CCCCC
Q 036791 136 PSRRY 140 (157)
Q Consensus 136 ~~~~~ 140 (157)
++...
T Consensus 81 ~~~~~ 85 (94)
T 2e5g_A 81 QKEFQ 85 (94)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 65543
No 138
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.6e-19 Score=110.61 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=69.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCCccCCcEEEEEe
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDM-NGKLLDGRVIFVDN 133 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l-~g~~~~g~~l~v~~ 133 (157)
...++|||+|||..+++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.| ++..+.|++|+|+|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 45678999999999999999999999999999998864 689999999999999999999 99999999999999
Q ss_pred ec
Q 036791 134 VR 135 (157)
Q Consensus 134 ~~ 135 (157)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 139
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=5.8e-19 Score=139.90 Aligned_cols=84 Identities=21% Similarity=0.413 Sum_probs=79.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||+.+++++|+.+|.+||.|..|.|+.++.+++++|||||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34578999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCC
Q 036791 135 RPSR 138 (157)
Q Consensus 135 ~~~~ 138 (157)
.++.
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8653
No 140
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.6e-20 Score=119.86 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=72.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
..+|||+|||+++++++|+++|+.| .|..+.|+.++. |+++|||||+|.+.++|++|+ .+|+..|+|+.|.|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 899999999965 999999999999999999999 5899999999999988875
Q ss_pred C
Q 036791 137 S 137 (157)
Q Consensus 137 ~ 137 (157)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 141
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.80 E-value=5.6e-19 Score=127.51 Aligned_cols=82 Identities=23% Similarity=0.303 Sum_probs=77.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
+.++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++.+++..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 036791 136 PS 137 (157)
Q Consensus 136 ~~ 137 (157)
..
T Consensus 94 ~~ 95 (213)
T 4f02_A 94 RD 95 (213)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 142
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.80 E-value=5.3e-19 Score=115.16 Aligned_cols=76 Identities=24% Similarity=0.382 Sum_probs=70.2
Q ss_pred cccEEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 56 NVSFWRCISVSFS-TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 56 ~~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
..++|||+|||+. +++++|+++|++||.|..+.+ .+|||||+|.+.++|++|++.||+..++|+.|+|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3478999999999 999999999999999999988 4789999999999999999999999999999999999
Q ss_pred cCCCC
Q 036791 135 RPSRR 139 (157)
Q Consensus 135 ~~~~~ 139 (157)
+++..
T Consensus 98 ~~~~~ 102 (110)
T 1wf1_A 98 GEPKP 102 (110)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 86443
No 143
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.79 E-value=1.4e-18 Score=120.26 Aligned_cols=108 Identities=21% Similarity=0.334 Sum_probs=89.1
Q ss_pred HHHHHHhccccccCcccccccCCceeceecccccccCCCcchhhccccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEE
Q 036791 9 TRKIQQFNSYFTEDSLLSFSSKPYQVVNYFSLHCIVRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEAT 88 (157)
Q Consensus 9 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~ 88 (157)
++|+..+++..+.++.+.+.... +. .......+|||+|||..+++++|+++|++||.|..+.
T Consensus 59 ~~a~~~l~~~~~~g~~l~v~~~~--------------~~----~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~ 120 (168)
T 1b7f_A 59 QRAIKVLNGITVRNKRLKVSYAR--------------PG----GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKN 120 (168)
T ss_dssp HHHHHHHTTCEETTEECEEEECC--------------CC----SSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEE
T ss_pred HHHHHhcCCCEeCCcEEEEEecC--------------CC----cccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEE
Confidence 45666677777766666443210 00 1123457899999999999999999999999999999
Q ss_pred EeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC--cEEEEEee
Q 036791 89 IIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG--RVIFVDNV 134 (157)
Q Consensus 89 ~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g--~~l~v~~~ 134 (157)
++.++.+++++|||||+|.+.++|.+|++.|||..+.| ++|+|.+|
T Consensus 121 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 121 ILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99998889999999999999999999999999999988 99999986
No 144
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.79 E-value=1.2e-18 Score=120.19 Aligned_cols=83 Identities=25% Similarity=0.373 Sum_probs=78.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
.++|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|+|..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CCC
Q 036791 137 SRR 139 (157)
Q Consensus 137 ~~~ 139 (157)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 145
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-18 Score=109.73 Aligned_cols=79 Identities=20% Similarity=0.307 Sum_probs=71.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|| ++++++|+++|++||.|..+.+. +.+|||||+|.+.++|++|+..||+..++|++|+|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 35578999995 89999999999999999999884 46789999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 036791 135 RPSRRYN 141 (157)
Q Consensus 135 ~~~~~~~ 141 (157)
+++....
T Consensus 85 ~~~~~~~ 91 (97)
T 1x5p_A 85 RKQPMLD 91 (97)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 8876544
No 146
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.79 E-value=2.2e-19 Score=124.27 Aligned_cols=110 Identities=14% Similarity=0.193 Sum_probs=90.4
Q ss_pred cccCCceeceecccccccCCC---------------cchhhccccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEee
Q 036791 27 FSSKPYQVVNYFSLHCIVRPS---------------SDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIM 91 (157)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~ 91 (157)
..+.+++++.|.+...+...- ...........+|||+|||..+++++|+++|++||.|..+.++.
T Consensus 42 g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~ 121 (167)
T 2cjk_A 42 GRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLML 121 (167)
T ss_dssp SSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCC
T ss_pred CCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEE
Confidence 345678888887665421110 00111112346899999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCC
Q 036791 92 DIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPS 137 (157)
Q Consensus 92 ~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~ 137 (157)
++.+|.++|||||+|.+.++|.+|++ +++..++|++|+|.++.|+
T Consensus 122 ~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 122 DKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred cCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 98899999999999999999999998 8999999999999999886
No 147
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.79 E-value=5.4e-20 Score=119.46 Aligned_cols=81 Identities=19% Similarity=0.253 Sum_probs=75.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQ---VTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v 131 (157)
....+|||+|||+++++++|+++|+.||. |..+.++.++. |+++|||||+|.+.++|++|+. +|+..++|+.|+|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 45678999999999999999999999988 89999999977 9999999999999999999999 9999999999999
Q ss_pred EeecCC
Q 036791 132 DNVRPS 137 (157)
Q Consensus 132 ~~~~~~ 137 (157)
.++.++
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 998764
No 148
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.6e-19 Score=117.79 Aligned_cols=79 Identities=10% Similarity=0.064 Sum_probs=72.1
Q ss_pred cEEEEcCC----CCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCC----HHH----HHHHHH--HhCCCc
Q 036791 58 SFWRCISV----SFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSST----EEE----AQKALV--DMNGKL 123 (157)
Q Consensus 58 ~~l~V~nl----~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~----~~~----a~~ai~--~l~g~~ 123 (157)
++|||+|| |+.+++.+|+++|+.||+|.++.++.|+.||.++|||||+|.+ .++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 333 888988 789999
Q ss_pred cCCcEEEEEeecC
Q 036791 124 LDGRVIFVDNVRP 136 (157)
Q Consensus 124 ~~g~~l~v~~~~~ 136 (157)
|+|++|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998764
No 149
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.79 E-value=1e-18 Score=120.87 Aligned_cols=83 Identities=22% Similarity=0.305 Sum_probs=79.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
.++|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|+|..+.|++|+|.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 56899999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CCC
Q 036791 137 SRR 139 (157)
Q Consensus 137 ~~~ 139 (157)
...
T Consensus 83 ~~~ 85 (168)
T 1b7f_A 83 GGE 85 (168)
T ss_dssp CSS
T ss_pred Ccc
Confidence 654
No 150
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.1e-19 Score=115.25 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=70.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..++|||+|||+.+++++|+++|++||.|..+.++. .+|||||+|.+.++|++|+..|||..++|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457899999999999999999999999999998764 46899999999999999999999999999999999998
Q ss_pred CCC
Q 036791 136 PSR 138 (157)
Q Consensus 136 ~~~ 138 (157)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 643
No 151
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.79 E-value=1.2e-18 Score=121.58 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=72.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
....+|||+|||..+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 345789999999999999999999999987665 467899999999999999999999999999999999999999
Q ss_pred cCCC
Q 036791 135 RPSR 138 (157)
Q Consensus 135 ~~~~ 138 (157)
.+++
T Consensus 172 ~~k~ 175 (175)
T 1fje_B 172 GEKG 175 (175)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8863
No 152
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.79 E-value=2.2e-18 Score=118.84 Aligned_cols=108 Identities=23% Similarity=0.339 Sum_probs=88.9
Q ss_pred HHHHHHhccccccCcccccccCCceeceecccccccCCCcchhhccccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEE
Q 036791 9 TRKIQQFNSYFTEDSLLSFSSKPYQVVNYFSLHCIVRPSSDLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFGQVTEAT 88 (157)
Q Consensus 9 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~ 88 (157)
++|++.+++..+.++.+.+.... +.. ......+|||+|||..+++++|+++|++||.|..+.
T Consensus 58 ~~a~~~l~~~~~~g~~l~v~~~~--------------~~~----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~ 119 (167)
T 1fxl_A 58 EKAINTLNGLRLQTKTIKVSYAR--------------PSS----ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSR 119 (167)
T ss_dssp HHHHHHHTTCEETTEECEEEECC--------------CCC----GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE
T ss_pred HHHHHHcCCCccCCceEEEEecC--------------CCc----ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEE
Confidence 56666777777777766543210 111 113456799999999999999999999999999999
Q ss_pred EeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE--EEEEee
Q 036791 89 IIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV--IFVDNV 134 (157)
Q Consensus 89 ~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~--l~v~~~ 134 (157)
++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+. |+|.||
T Consensus 120 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 120 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999889999999999999999999999999999999964 888875
No 153
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.78 E-value=7.1e-20 Score=124.17 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=75.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
....+|||+|||+++++++|+++|++|| +..|.|+.++. ++++|||||+|.+.++|++|| .+|+..|.|+.|+|..+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4557899999999999999999999999 77999999976 999999999999999999999 78999999999999999
Q ss_pred cCCCCC
Q 036791 135 RPSRRY 140 (157)
Q Consensus 135 ~~~~~~ 140 (157)
.++...
T Consensus 121 ~~~~~~ 126 (139)
T 2hgn_A 121 STTGAS 126 (139)
T ss_dssp CCSCC-
T ss_pred CCCCCC
Confidence 876544
No 154
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.78 E-value=6.7e-19 Score=124.01 Aligned_cols=82 Identities=23% Similarity=0.310 Sum_probs=77.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..++|||+|||+.+++++|+++|+.||.|..|.++.++ +++++|||||+|.+.++|++|++.||+..|.|+.|+|.++.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 45789999999999999999999999999999999997 89999999999999999999999999999999999999998
Q ss_pred CCC
Q 036791 136 PSR 138 (157)
Q Consensus 136 ~~~ 138 (157)
+..
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 653
No 155
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.78 E-value=1.9e-18 Score=119.63 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=72.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC--cEEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG--RVIFVD 132 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g--~~l~v~ 132 (157)
.+..+|||+||++.+++++|+++|++||.|.++.+... ..+|||||+|.+.++|++|++.|||..|.| ++|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34567999999999999999999999999999998643 257999999999999999999999999966 999999
Q ss_pred eecCCC
Q 036791 133 NVRPSR 138 (157)
Q Consensus 133 ~~~~~~ 138 (157)
|++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 999863
No 156
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=113.35 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=70.9
Q ss_pred ccccEEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CCccCCcEEEE
Q 036791 55 VNVSFWRCISVSFS-TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMN--GKLLDGRVIFV 131 (157)
Q Consensus 55 ~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~--g~~~~g~~l~v 131 (157)
.+.++|||+|||++ +++++|+++|++||.|..+.++. .+|||||+|.+.++|++|++.|+ +..|.|++|+|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 34678999999998 99999999999999999999864 37899999999999999999886 45699999999
Q ss_pred EeecCCCCC
Q 036791 132 DNVRPSRRY 140 (157)
Q Consensus 132 ~~~~~~~~~ 140 (157)
.++.++...
T Consensus 97 ~~a~~~~~~ 105 (112)
T 1x4f_A 97 DLSEKYKKL 105 (112)
T ss_dssp EEECSCSSS
T ss_pred EECcccccc
Confidence 999876543
No 157
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=110.97 Aligned_cols=78 Identities=21% Similarity=0.222 Sum_probs=71.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEA-TIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
..++|||+|||+++++++|+++|++||.|..+ .++.++.++. |||+|.+.++|++|++.|||..++|++|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999 5887765543 999999999999999999999999999999999
Q ss_pred cCC
Q 036791 135 RPS 137 (157)
Q Consensus 135 ~~~ 137 (157)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 986
No 158
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=118.53 Aligned_cols=87 Identities=23% Similarity=0.275 Sum_probs=73.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEE--E---eecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEAT--I---IMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~--~---~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l 129 (157)
...++|||+|||+.+++++|+++|+.||.|..+. + +....+|+++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 3457899999999999999999999999887631 0 1112468999999999999999999999999999999999
Q ss_pred EEEeecCCCCCC
Q 036791 130 FVDNVRPSRRYN 141 (157)
Q Consensus 130 ~v~~~~~~~~~~ 141 (157)
+|.++++...+.
T Consensus 123 ~V~~a~~~~~~~ 134 (143)
T 3egn_A 123 VVQFARSARPKQ 134 (143)
T ss_dssp EEEECCCSCC--
T ss_pred EEEECCCCCCcc
Confidence 999998765443
No 159
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.77 E-value=4.5e-18 Score=113.66 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=71.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCCccCC--cEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGY-GYVTSSTEEEAQKALVDMNGKLLDG--RVIFV 131 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~ai~~l~g~~~~g--~~l~v 131 (157)
.+...|||+||++.+++++|+++|++||.|.++.+... .+|+ |||+|.+.++|++|++.|||..|+| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 45667999999999999999999999999999988754 2577 9999999999999999999999988 89999
Q ss_pred EeecCCC
Q 036791 132 DNVRPSR 138 (157)
Q Consensus 132 ~~~~~~~ 138 (157)
.|++++.
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998763
No 160
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.77 E-value=1.5e-18 Score=114.03 Aligned_cols=77 Identities=19% Similarity=0.161 Sum_probs=67.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE-----EE
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRV-----IF 130 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~-----l~ 130 (157)
...+|||+|||+++++++|+++|.+||.|..+.++.+ |||||+|.+.++|++||+.||+..|+|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3568999999999999999999999999999998765 89999999999999999999999999988 88
Q ss_pred EEeecCCCC
Q 036791 131 VDNVRPSRR 139 (157)
Q Consensus 131 v~~~~~~~~ 139 (157)
|..+.++..
T Consensus 88 v~~~~~~~~ 96 (115)
T 3beg_B 88 VKVDGPRSP 96 (115)
T ss_dssp EEECC----
T ss_pred eccCCCCCC
Confidence 888776543
No 161
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=3.4e-18 Score=121.14 Aligned_cols=84 Identities=30% Similarity=0.434 Sum_probs=77.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 4567899999999999999999999999999999999999999999999999999999999986 899999999999998
Q ss_pred cCCCC
Q 036791 135 RPSRR 139 (157)
Q Consensus 135 ~~~~~ 139 (157)
.+...
T Consensus 90 ~~~~~ 94 (196)
T 1l3k_A 90 VSRED 94 (196)
T ss_dssp CC---
T ss_pred cCccc
Confidence 77543
No 162
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.77 E-value=4.6e-18 Score=127.26 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=94.9
Q ss_pred HHHHHHhccccccCcccccccCCceeceecccccccCCCcchhhccccccEEEEcCCCCCC-CHHHHHHHHhcCCCeeEE
Q 036791 9 TRKIQQFNSYFTEDSLLSFSSKPYQVVNYFSLHCIVRPSSDLIMQLVNVSFWRCISVSFST-TKEMLADAFSQFGQVTEA 87 (157)
Q Consensus 9 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~-~~~~l~~~f~~~G~i~~~ 87 (157)
++|+..+++..+.++.+.+.... .. ..........+|||+|||..+ ++++|+++|+.||.|..+
T Consensus 151 ~~A~~~l~~~~~~g~~i~v~~a~--------~~-------~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v 215 (284)
T 3smz_A 151 ARAKSDLLGKPLGPRTLYVHWTD--------AG-------QLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFC 215 (284)
T ss_dssp HHHHHHHTTCEETTEECEEEECC--------GG-------GCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEE
T ss_pred HHHHHHhCCCEeCCcEEEEEECC--------CC-------CCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEE
Confidence 56777788888877777554211 10 011122345789999999995 999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCCCCC
Q 036791 88 TIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSRRY 140 (157)
Q Consensus 88 ~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~~~~ 140 (157)
.++.++ +|+++|+|||+|.+.++|.+|+..|||..++|++|+|.++.++..+
T Consensus 216 ~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 216 QLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp EEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCH
T ss_pred EEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcc
Confidence 999985 7999999999999999999999999999999999999999987653
No 163
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.76 E-value=2.4e-18 Score=107.79 Aligned_cols=76 Identities=16% Similarity=0.151 Sum_probs=70.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
+.++|||+|||+.+++++|+++|++| .|..+.+. +++|||||+|.+.++|++|++.|||..++|++|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45689999999999999999999999 99999884 578999999999999999999999999999999999997
Q ss_pred CCC
Q 036791 136 PSR 138 (157)
Q Consensus 136 ~~~ 138 (157)
.+.
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 653
No 164
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7.5e-19 Score=116.79 Aligned_cols=81 Identities=25% Similarity=0.252 Sum_probs=73.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCe----eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQV----TEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIF 130 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i----~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~ 130 (157)
.+..+|||+|||+++++++|+++|++||.| ..|.|+.+ .+|+++|||||+|.+.++|++|++. |+..|.|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 445789999999999999999999999875 68999998 5899999999999999999999996 99999999999
Q ss_pred EEeecCC
Q 036791 131 VDNVRPS 137 (157)
Q Consensus 131 v~~~~~~ 137 (157)
|..+.++
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9998654
No 165
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.76 E-value=1.5e-17 Score=115.58 Aligned_cols=79 Identities=24% Similarity=0.211 Sum_probs=73.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC---CcEEEEE
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD---GRVIFVD 132 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~---g~~l~v~ 132 (157)
...+|||+|||..+++++|+++|++||.|..+.++.++ +|+++|||||+|.+.++|.+|++.|||..+. |++|+|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 45689999999999999999999999999999999985 5899999999999999999999999998876 4999999
Q ss_pred eec
Q 036791 133 NVR 135 (157)
Q Consensus 133 ~~~ 135 (157)
|+.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 166
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=9.7e-19 Score=116.64 Aligned_cols=80 Identities=26% Similarity=0.311 Sum_probs=72.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCee--EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVT--EATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~--~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 132 (157)
.+..+|||+|||+++++++|+++|+.| .|. .|.|+.++. |+++|||||+|.+.++|++|++. ++..|+|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 455789999999999999999999999 677 899999976 99999999999999999999985 7899999999999
Q ss_pred eecCC
Q 036791 133 NVRPS 137 (157)
Q Consensus 133 ~~~~~ 137 (157)
.+.++
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88653
No 167
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.75 E-value=5.7e-18 Score=127.21 Aligned_cols=118 Identities=17% Similarity=0.148 Sum_probs=91.6
Q ss_pred HHHHHHhccccccCcccccccCCceeceecccccccCCCcchhhccccccEEEEcCCCCC-CCHHHHHHHHhcCCCeeEE
Q 036791 9 TRKIQQFNSYFTEDSLLSFSSKPYQVVNYFSLHCIVRPSSDLIMQLVNVSFWRCISVSFS-TTKEMLADAFSQFGQVTEA 87 (157)
Q Consensus 9 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~~ 87 (157)
++|+..+++..+.++.+.+.... .... ............+|||+|||.. +++++|+++|+.||.|..+
T Consensus 173 ~~A~~~l~g~~~~g~~l~v~~a~--------~~~~---~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v 241 (292)
T 2ghp_A 173 RYCVEKLNGLKIEGYTLVTKVSN--------PLEK---SKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKI 241 (292)
T ss_dssp HHHHHHHTTCEETTEECEEEECC--------CC------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEE
T ss_pred HHHHHHhCCCEeCCcEEEEEECC--------CCcc---cccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEE
Confidence 56777788888887777544211 0000 0000122345678999999999 9999999999999999999
Q ss_pred EEeecCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCCC
Q 036791 88 TIIMDIG-KNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSR 138 (157)
Q Consensus 88 ~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~~ 138 (157)
.++.+.. ||.++|||||+|.+.++|.+|+ .|||..|.|++|+|.++.+++
T Consensus 242 ~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 242 NIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp ECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred EEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 9999866 5999999999999999999999 999999999999999999863
No 168
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=104.62 Aligned_cols=74 Identities=14% Similarity=0.126 Sum_probs=66.2
Q ss_pred cEEEEcCCCCCCCHHH----HHHHHhcC-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 036791 58 SFWRCISVSFSTTKEM----LADAFSQF-GQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~----l~~~f~~~-G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 132 (157)
+.|||+|||+.+++++ |+++|++| |.|..| ++ |+|||.|.+.++|.+|++.|+|..+.|++|+|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 3499999999999987 56899999 599887 23 999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 036791 133 NVRPSRRYN 141 (157)
Q Consensus 133 ~~~~~~~~~ 141 (157)
+++.+..--
T Consensus 80 ~A~~~sd~~ 88 (96)
T 2diu_A 80 FTPKNRELC 88 (96)
T ss_dssp SSCCSCCCC
T ss_pred ecCCCccee
Confidence 999876543
No 169
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.75 E-value=2.5e-17 Score=123.23 Aligned_cols=85 Identities=20% Similarity=0.337 Sum_probs=79.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
...+|||+|||+.+++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|.+|+..|+|..++|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 34689999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 036791 136 PSRRY 140 (157)
Q Consensus 136 ~~~~~ 140 (157)
++...
T Consensus 174 ~~~~~ 178 (284)
T 3smz_A 174 AGQLT 178 (284)
T ss_dssp GGGCC
T ss_pred CCCCC
Confidence 76543
No 170
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=2.4e-17 Score=109.54 Aligned_cols=78 Identities=22% Similarity=0.253 Sum_probs=69.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCCccCC--cEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGY-GYVTSSTEEEAQKALVDMNGKLLDG--RVIFV 131 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~ai~~l~g~~~~g--~~l~v 131 (157)
.+...|||+||++.+++++|+++|++||.|..|.+.. + .|| |||+|.+.++|.+|++.|||..|.| +.|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 3445689999999999999999999999999998864 2 275 9999999999999999999999988 68999
Q ss_pred EeecCCC
Q 036791 132 DNVRPSR 138 (157)
Q Consensus 132 ~~~~~~~ 138 (157)
.+++++.
T Consensus 97 ~~Ak~~~ 103 (124)
T 2e5i_A 97 EYARPTR 103 (124)
T ss_dssp ECCSCSC
T ss_pred EEecCCc
Confidence 9999864
No 171
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.4e-17 Score=114.72 Aligned_cols=81 Identities=20% Similarity=0.352 Sum_probs=75.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCC
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPS 137 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~ 137 (157)
++|||+|||.++++++|+++|++||.|..+.++.++ +++++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 479999999999999999999999999999999985 4789999999999999999999999999999999999999775
Q ss_pred CC
Q 036791 138 RR 139 (157)
Q Consensus 138 ~~ 139 (157)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 172
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.5e-18 Score=110.49 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=68.3
Q ss_pred cccEEEE--cCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc-----CCcE
Q 036791 56 NVSFWRC--ISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL-----DGRV 128 (157)
Q Consensus 56 ~~~~l~V--~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~-----~g~~ 128 (157)
+..+||| +||++++++++|+++|++||.|..+.++. .+|||||+|.+.++|++|++.|||..+ .|++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4567999 77999999999999999999999987753 268999999999999999999999988 6899
Q ss_pred EEEEeecCC
Q 036791 129 IFVDNVRPS 137 (157)
Q Consensus 129 l~v~~~~~~ 137 (157)
|.|.++...
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999999754
No 173
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=9.7e-18 Score=120.43 Aligned_cols=84 Identities=26% Similarity=0.330 Sum_probs=75.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||.++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34578999999999999999999999999999999999889999999999999999999999999999999999999887
Q ss_pred cCCC
Q 036791 135 RPSR 138 (157)
Q Consensus 135 ~~~~ 138 (157)
....
T Consensus 106 ~~~~ 109 (216)
T 2qfj_A 106 SNIG 109 (216)
T ss_dssp SCCG
T ss_pred CCcc
Confidence 6543
No 174
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=1.2e-17 Score=104.85 Aligned_cols=76 Identities=22% Similarity=0.298 Sum_probs=62.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc--cCCcEEEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL--LDGRVIFVD 132 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~--~~g~~l~v~ 132 (157)
....+|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++ +++.. +.|+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 34578999999999999999999999999999998764 68999999999999983 45665 459999999
Q ss_pred eecCCCC
Q 036791 133 NVRPSRR 139 (157)
Q Consensus 133 ~~~~~~~ 139 (157)
++.++..
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9988654
No 175
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.2e-18 Score=106.11 Aligned_cols=80 Identities=21% Similarity=0.279 Sum_probs=66.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..++|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++++.. ...+.|++|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 4578999999999999999999999999999988754 689999999999999764321 234589999999999
Q ss_pred CCCCCCC
Q 036791 136 PSRRYNT 142 (157)
Q Consensus 136 ~~~~~~~ 142 (157)
++.....
T Consensus 77 ~~~~~~~ 83 (88)
T 1wf0_A 77 PKHNSNS 83 (88)
T ss_dssp CCCCCCS
T ss_pred CCCCCCC
Confidence 8765443
No 176
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=108.30 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=64.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGK---NRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 132 (157)
..++|||+|||+++++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++|++.|+ .++|+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 457899999999999999999999999999 888888777 7999999999999999999999983 2555555554
Q ss_pred ee
Q 036791 133 NV 134 (157)
Q Consensus 133 ~~ 134 (157)
.+
T Consensus 84 ~~ 85 (114)
T 2dnl_A 84 SS 85 (114)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.73 E-value=3e-17 Score=114.06 Aligned_cols=83 Identities=22% Similarity=0.223 Sum_probs=75.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCCccC---CcEEE
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKN--RSKGYGYVTSSTEEEAQKALVDMNGKLLD---GRVIF 130 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~--~~~g~afv~f~~~~~a~~ai~~l~g~~~~---g~~l~ 130 (157)
+.++|||+|||+++++++|+++|++||.|..+.++.++.++ +++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45789999999999999999999999999999999998877 89999999999999999999999998875 67888
Q ss_pred EEeecCCC
Q 036791 131 VDNVRPSR 138 (157)
Q Consensus 131 v~~~~~~~ 138 (157)
+.++.+..
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88877654
No 178
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.73 E-value=2.4e-17 Score=109.25 Aligned_cols=78 Identities=21% Similarity=0.302 Sum_probs=70.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|+ ++++++|+++|++||.|..+.+. +++|||||+|.+.++|++|++.|||..++|+.|+|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45678999995 69999999999999999999885 46799999999999999999999999999999999999
Q ss_pred cCCCCC
Q 036791 135 RPSRRY 140 (157)
Q Consensus 135 ~~~~~~ 140 (157)
+++...
T Consensus 109 ~~~~~~ 114 (121)
T 2bz2_A 109 RKQPML 114 (121)
T ss_dssp CSSCC-
T ss_pred CCCCCC
Confidence 886543
No 179
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.72 E-value=2.4e-17 Score=118.53 Aligned_cols=77 Identities=12% Similarity=0.220 Sum_probs=71.1
Q ss_pred cccEEEEcCCC-CCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 56 NVSFWRCISVS-FSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 56 ~~~~l~V~nl~-~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...+|||+||| +.+++++|+++|++||.|.++.++.+ .+|||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 35689999999 89999999999999999999999765 3799999999999999999999999999999999998
Q ss_pred cCC
Q 036791 135 RPS 137 (157)
Q Consensus 135 ~~~ 137 (157)
+.+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 754
No 180
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.71 E-value=3.9e-17 Score=101.66 Aligned_cols=71 Identities=20% Similarity=0.382 Sum_probs=65.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQF----G-------QVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~ 124 (157)
..++|||+|||+++++++|+++|++| | .|..+.+..+ +|||||+|.+.++|++|+ .|||..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 46789999999999999999999999 8 8999888654 799999999999999999 9999999
Q ss_pred CCcEEEEEe
Q 036791 125 DGRVIFVDN 133 (157)
Q Consensus 125 ~g~~l~v~~ 133 (157)
+|+.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.71 E-value=1.4e-16 Score=119.12 Aligned_cols=76 Identities=16% Similarity=0.161 Sum_probs=70.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC-CcEEEEEee
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD-GRVIFVDNV 134 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~-g~~l~v~~~ 134 (157)
...+|||+|||..+++++|+++|++||.|..+.++.++ +|||||+|.+.++|.+|++.|||..+. |+.|+|.|+
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 45789999999999999999999999999999998653 589999999999999999999999999 999999998
Q ss_pred cC
Q 036791 135 RP 136 (157)
Q Consensus 135 ~~ 136 (157)
+.
T Consensus 281 kk 282 (282)
T 3pgw_A 281 KK 282 (282)
T ss_pred cC
Confidence 63
No 182
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.71 E-value=1.6e-16 Score=102.76 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=71.7
Q ss_pred cccEEEEcCCCC-----CCCHHHHHHHHhcCCCeeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 036791 56 NVSFWRCISVSF-----STTKEMLADAFSQFGQVTEATIIMDIGK-NRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129 (157)
Q Consensus 56 ~~~~l~V~nl~~-----~~~~~~l~~~f~~~G~i~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l 129 (157)
..+.|+|.||.. +-.+++|++.|++||.|..+.++.++.+ ++++|++||+|.+.++|.+|++.|||..++|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 456799999863 2367999999999999999999988654 6889999999999999999999999999999999
Q ss_pred EEEeecC
Q 036791 130 FVDNVRP 136 (157)
Q Consensus 130 ~v~~~~~ 136 (157)
+|.++.+
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999875
No 183
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.70 E-value=1e-16 Score=119.86 Aligned_cols=81 Identities=19% Similarity=0.209 Sum_probs=74.6
Q ss_pred ccccEEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 036791 55 VNVSFWRCISVSFSTTKEMLA----DAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIF 130 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~ 130 (157)
...++|||+|||+++++++|+ ++|+.||.|..|.+.. +++++|||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 456789999999999999976 8999999999998875 588999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 036791 131 VDNVRPSR 138 (157)
Q Consensus 131 v~~~~~~~ 138 (157)
|.+++.+.
T Consensus 84 v~~a~~~~ 91 (282)
T 3pgw_A 84 IQYAKTDS 91 (282)
T ss_pred EEEeccCc
Confidence 99997654
No 184
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.70 E-value=9.3e-17 Score=115.47 Aligned_cols=125 Identities=12% Similarity=0.077 Sum_probs=89.2
Q ss_pred HHHHHHHhccccccCcccccccCCceec-eec--cccc------------ccCCCcc---h-hhccccccEEEEcCCCCC
Q 036791 8 QTRKIQQFNSYFTEDSLLSFSSKPYQVV-NYF--SLHC------------IVRPSSD---L-IMQLVNVSFWRCISVSFS 68 (157)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~------------~~~~~~~---~-~~~~~~~~~l~V~nl~~~ 68 (157)
-++|++.||+..+.++.+++........ ... .... ..+-... . .....+..+|||+|||++
T Consensus 55 A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~ 134 (205)
T 3tyt_A 55 VDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLE 134 (205)
T ss_dssp HHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTT
T ss_pred HHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCC
Confidence 3678889999999999987764221110 000 0000 0000000 0 000123568999999999
Q ss_pred CCHHHHHHHHhcCCCe--eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCc----EEEEEee
Q 036791 69 TTKEMLADAFSQFGQV--TEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGR----VIFVDNV 134 (157)
Q Consensus 69 ~~~~~l~~~f~~~G~i--~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~----~l~v~~~ 134 (157)
+++++|+++|++||.| ..+.+..++ +..+|+|||+|.+.++|.+||..|||..|.|+ ++.|+++
T Consensus 135 ~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 135 VTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9999999999999999 888888764 56679999999999999999999999999875 6777665
No 185
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=3.7e-17 Score=112.98 Aligned_cols=80 Identities=24% Similarity=0.436 Sum_probs=74.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
+.++|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|++|+.. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 357899999999999999999999999999999999999999999999999999999999984 678999999999886
Q ss_pred CC
Q 036791 136 PS 137 (157)
Q Consensus 136 ~~ 137 (157)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 54
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.70 E-value=4.2e-16 Score=113.55 Aligned_cols=124 Identities=17% Similarity=0.159 Sum_probs=91.1
Q ss_pred HHHHHHhccccccCcccccccCCceeceeccc----------------ccccCCCcc-hhhccccccEEEEcCCCCCCCH
Q 036791 9 TRKIQQFNSYFTEDSLLSFSSKPYQVVNYFSL----------------HCIVRPSSD-LIMQLVNVSFWRCISVSFSTTK 71 (157)
Q Consensus 9 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~-~~~~~~~~~~l~V~nl~~~~~~ 71 (157)
++|++.+|+..+.++.+.+............. .....+... ......+..+|||+|||..+++
T Consensus 86 ~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~ 165 (229)
T 2adc_A 86 QLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSE 165 (229)
T ss_dssp HHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCH
T ss_pred HHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCH
Confidence 67788899999999988765422111000000 000001100 0111233578999999999999
Q ss_pred HHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC-CcEEEEEeecCC
Q 036791 72 EMLADAFSQFG-QVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD-GRVIFVDNVRPS 137 (157)
Q Consensus 72 ~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~-g~~l~v~~~~~~ 137 (157)
++|+++|++|| .|..+.++.+ .+|||||+|.+.++|.+|+..|||..+. |+.|+|.|++++
T Consensus 166 ~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 166 EDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99999999999 9999988653 3689999999999999999999999999 999999999874
No 187
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.70 E-value=1.4e-16 Score=113.56 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=72.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..++|||+|||+++++++|+++|++||.|..+.++.+. +++++|||||+|.+.++|++|+..+ +..++|+.|.|.++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 45789999999999999999999999999999999985 5899999999999999999999876 458999999999876
Q ss_pred C
Q 036791 136 P 136 (157)
Q Consensus 136 ~ 136 (157)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 5
No 188
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.69 E-value=2.1e-16 Score=117.26 Aligned_cols=81 Identities=30% Similarity=0.451 Sum_probs=73.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC-CCccC---CcEEEEE
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMN-GKLLD---GRVIFVD 132 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~-g~~~~---g~~l~v~ 132 (157)
..+|||+|||..+++++|+++|+.||.|..+.++.+ .+|+++|||||+|.+.++|.+|+..|| +..+. +++|.|.
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 468999999999999999999999999999999999 689999999999999999999999995 44444 9999999
Q ss_pred eecCCC
Q 036791 133 NVRPSR 138 (157)
Q Consensus 133 ~~~~~~ 138 (157)
++.+..
T Consensus 175 ~~~~~~ 180 (261)
T 3sde_A 175 PMEQFD 180 (261)
T ss_dssp ECCCEE
T ss_pred eccccC
Confidence 998753
No 189
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.69 E-value=6.7e-17 Score=118.42 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=70.0
Q ss_pred ccccEEEEcCCCCCC---------CHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc-
Q 036791 55 VNVSFWRCISVSFST---------TKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL- 124 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~---------~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~- 124 (157)
...++|||+||+..+ ++++|+++|++||.|..|.++. ++|||||+|.+.++|+.|++.|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 356799999999998 7999999999999999999985 379999999999999999999999999
Q ss_pred -----------CCcEEEEEeecCCCC
Q 036791 125 -----------DGRVIFVDNVRPSRR 139 (157)
Q Consensus 125 -----------~g~~l~v~~~~~~~~ 139 (157)
.|+.|.|.|++....
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987643
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.69 E-value=2.3e-16 Score=112.09 Aligned_cols=125 Identities=16% Similarity=0.138 Sum_probs=91.2
Q ss_pred HHHHHHHhccccccCcccccccCCceeceecccc----------------cccCCCcc-hhhccccccEEEEcCCCCCCC
Q 036791 8 QTRKIQQFNSYFTEDSLLSFSSKPYQVVNYFSLH----------------CIVRPSSD-LIMQLVNVSFWRCISVSFSTT 70 (157)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~-~~~~~~~~~~l~V~nl~~~~~ 70 (157)
-++|+..+++..+.++.+.+.............. ....+... ......+..+|||+|||..++
T Consensus 54 a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 133 (198)
T 1qm9_A 54 AQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS 133 (198)
T ss_dssp HHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCC
T ss_pred HHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCC
Confidence 3677888999999998887653211110000000 00000000 001113367899999999999
Q ss_pred HHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC-CcEEEEEeecCC
Q 036791 71 KEMLADAFSQFG-QVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD-GRVIFVDNVRPS 137 (157)
Q Consensus 71 ~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~-g~~l~v~~~~~~ 137 (157)
+++|+++|++|| .|..+.+..+ .+|+|||+|.+.++|.+|+..|||..+. |+.|+|.|++++
T Consensus 134 ~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 134 EEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 999999999999 9999988654 2689999999999999999999999999 999999999874
No 191
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.67 E-value=2.5e-16 Score=118.24 Aligned_cols=110 Identities=12% Similarity=0.198 Sum_probs=82.7
Q ss_pred CCceeceecccccccCCCc---------chhhccccccEEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCcc
Q 036791 30 KPYQVVNYFSLHCIVRPSS---------DLIMQLVNVSFWRCISVSFSTTKEMLADAFSQFG-QVTEATIIMDIGKNRSK 99 (157)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~ 99 (157)
.+++++.|.....+..+-. .......+..+|||+|||+.+++++|+++|+.|| .|..+.++.++. +.++
T Consensus 81 ~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~ 159 (292)
T 2ghp_A 81 FRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSR 159 (292)
T ss_dssp SEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------C
T ss_pred cEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcc
Confidence 5677777776655322210 0111123457899999999999999999999999 999999998855 8899
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCCCCC
Q 036791 100 GYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSRRY 140 (157)
Q Consensus 100 g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~~~~ 140 (157)
|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.+....
T Consensus 160 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 160 RFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 99999999999999999999999999999999999876543
No 192
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.67 E-value=2.6e-16 Score=114.68 Aligned_cols=78 Identities=22% Similarity=0.278 Sum_probs=72.9
Q ss_pred ccccEEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Q 036791 55 VNVSFWRCISVSF-STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDN 133 (157)
Q Consensus 55 ~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 133 (157)
....+|||+|||+ .+++++|+++|+.||.|..+.++.++ +|||||+|.+.++|++|++.|+|..+.|+.|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4567899999999 99999999999999999999998874 78999999999999999999999999999999999
Q ss_pred ecCC
Q 036791 134 VRPS 137 (157)
Q Consensus 134 ~~~~ 137 (157)
++++
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 9865
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-15 Score=99.58 Aligned_cols=83 Identities=20% Similarity=0.282 Sum_probs=70.7
Q ss_pred ccccEEEEcCCCCCCC-----------HHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Q 036791 55 VNVSFWRCISVSFSTT-----------KEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKL 123 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~-----------~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~ 123 (157)
....+|+|.||..... +++|+++|++||.|..+.+ .++ .++|||||+|.+.++|++|+..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4567899999944432 5799999999999999955 553 379999999999999999999999999
Q ss_pred cCCcEEEEEeecCCCCCC
Q 036791 124 LDGRVIFVDNVRPSRRYN 141 (157)
Q Consensus 124 ~~g~~l~v~~~~~~~~~~ 141 (157)
++|++|+|.++.++....
T Consensus 89 ~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 89 FGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp ETTEECEEEECCSCCCSS
T ss_pred ECCcEEEEEEeCCCCCcc
Confidence 999999999998876543
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.64 E-value=6.3e-17 Score=112.79 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=72.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
...++|||+|||.++++++|+++|..||.+.. .++.+..+++++|||||+|.+.++|.+|++ |+|..+.|+.|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 45678999999999999999999999987765 334444678899999999999999999995 9999999999999999
Q ss_pred cCCCC
Q 036791 135 RPSRR 139 (157)
Q Consensus 135 ~~~~~ 139 (157)
.++..
T Consensus 89 ~~~~~ 93 (175)
T 1fje_B 89 KGRDS 93 (175)
T ss_dssp CCSSC
T ss_pred CCccc
Confidence 87654
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=3.8e-16 Score=110.98 Aligned_cols=76 Identities=22% Similarity=0.283 Sum_probs=71.2
Q ss_pred ccEEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 57 VSFWRCISVSF-STTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 57 ~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
.++|||+|||+ .+++++|+++|+.||.|..+.++.++ +|||||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 46899999999 99999999999999999999998764 7899999999999999999999999999999999998
Q ss_pred CC
Q 036791 136 PS 137 (157)
Q Consensus 136 ~~ 137 (157)
+.
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.62 E-value=2.4e-15 Score=111.57 Aligned_cols=77 Identities=17% Similarity=0.295 Sum_probs=71.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEee
Q 036791 55 VNVSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNV 134 (157)
Q Consensus 55 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~ 134 (157)
.+.++|||+|||+++++++|+++|+.||.|..+.+.. .+|||||.|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 4567899999999999999999999999999998854 3689999999999999999999999999999999998
Q ss_pred cCC
Q 036791 135 RPS 137 (157)
Q Consensus 135 ~~~ 137 (157)
.+.
T Consensus 94 ~~~ 96 (261)
T 3sde_A 94 THG 96 (261)
T ss_dssp CCS
T ss_pred ccC
Confidence 763
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.61 E-value=4e-16 Score=100.69 Aligned_cols=72 Identities=21% Similarity=0.417 Sum_probs=63.6
Q ss_pred EcCCCCCCCHHHHHHHH------------hcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 036791 62 CISVSFSTTKEMLADAF------------SQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVI 129 (157)
Q Consensus 62 V~nl~~~~~~~~l~~~f------------~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l 129 (157)
+.+|++.+++++|++.| ++||.|..+.++.++ +++++|||||.|.+.++|.+|+..|||..++|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677777777776666 999999999999885 47899999999999999999999999999999999
Q ss_pred EEEee
Q 036791 130 FVDNV 134 (157)
Q Consensus 130 ~v~~~ 134 (157)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 198
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.60 E-value=6.6e-15 Score=96.99 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=69.7
Q ss_pred cccEEEEcCCCC--CC---CHHHHHHHHhcCCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 036791 56 NVSFWRCISVSF--ST---TKEMLADAFSQFGQVTEATIIMDIG----KNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG 126 (157)
Q Consensus 56 ~~~~l~V~nl~~--~~---~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g 126 (157)
+.+.|++.|+-. .+ -+++|++.|++||.|..+.|+.++. +++++|++||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 456788888732 22 2588999999999999999998864 45778999999999999999999999999999
Q ss_pred cEEEEEeecC
Q 036791 127 RVIFVDNVRP 136 (157)
Q Consensus 127 ~~l~v~~~~~ 136 (157)
+.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.60 E-value=5.2e-15 Score=95.58 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=68.8
Q ss_pred cccEEEEcCC--CCCCC--------HHHHHHHHhcCCCeeEEEEeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCCc
Q 036791 56 NVSFWRCISV--SFSTT--------KEMLADAFSQFGQVTEATIIMDIGK--NRSKGYGYVTSSTEEEAQKALVDMNGKL 123 (157)
Q Consensus 56 ~~~~l~V~nl--~~~~~--------~~~l~~~f~~~G~i~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~ai~~l~g~~ 123 (157)
+.+.|.+.|+ |..+. +++|++.|++||.|.++.|+.++.+ +.++|++||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3456778887 33333 3689999999999999999988654 3678999999999999999999999999
Q ss_pred cCCcEEEEEeecC
Q 036791 124 LDGRVIFVDNVRP 136 (157)
Q Consensus 124 ~~g~~l~v~~~~~ 136 (157)
++|+.|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999864
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.58 E-value=7.5e-15 Score=101.73 Aligned_cols=76 Identities=17% Similarity=0.340 Sum_probs=66.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQF----G-------QVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLL 124 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~ 124 (157)
+.++|||+|||+++++++|+++|++| | .|..+.+. +.+|||||+|.+.++|.+|+ .|+|..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45789999999999999999999999 6 66666553 44799999999999999999 8999999
Q ss_pred CCcEEEEEeecCCC
Q 036791 125 DGRVIFVDNVRPSR 138 (157)
Q Consensus 125 ~g~~l~v~~~~~~~ 138 (157)
.|+.|+|.++.+..
T Consensus 76 ~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQ 89 (172)
T ss_dssp TTEECEEECCSSCC
T ss_pred cCceeeecCCcccC
Confidence 99999999877643
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.57 E-value=1.6e-14 Score=102.23 Aligned_cols=75 Identities=19% Similarity=0.369 Sum_probs=66.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQF----G-------QVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD 125 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~ 125 (157)
.++|||+|||+++++++|+++|+.| | .|..+.+ ++++|||||+|.+.++|++|+ .|||..+.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 5689999999999999999999999 4 4555544 456899999999999999999 89999999
Q ss_pred CcEEEEEeecCCC
Q 036791 126 GRVIFVDNVRPSR 138 (157)
Q Consensus 126 g~~l~v~~~~~~~ 138 (157)
|+.|+|.++.+..
T Consensus 77 g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 77 GQSLKIRRPHDYQ 89 (198)
T ss_dssp TEEEEEECCCCCC
T ss_pred CceEEEeCCCCCC
Confidence 9999999987653
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.7e-14 Score=91.36 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCCCCC
Q 036791 67 FSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSRRY 140 (157)
Q Consensus 67 ~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~~~~ 140 (157)
..+++++|+++|++||.|..+.++ ++++|||||+|.+.++|++|++.+++ +.|++|+|.|++++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 568999999999999999999887 46789999999999999999998544 67999999999876543
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.50 E-value=6e-14 Score=107.72 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=64.1
Q ss_pred ccccEEEEcC--CCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC---Cc--
Q 036791 55 VNVSFWRCIS--VSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD---GR-- 127 (157)
Q Consensus 55 ~~~~~l~V~n--l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~---g~-- 127 (157)
.+..+|||+| |+..+++++|+++|++||.|..+.+.. +||||||+|.+.++|++|++.|||..+. |+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 4556899999 578999999999999999999886643 4799999999999999999999999873 45
Q ss_pred EEEEEeec
Q 036791 128 VIFVDNVR 135 (157)
Q Consensus 128 ~l~v~~~~ 135 (157)
.|.|.++.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 57777774
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.40 E-value=6.3e-13 Score=86.94 Aligned_cols=61 Identities=18% Similarity=0.285 Sum_probs=55.7
Q ss_pred HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 72 EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 72 ~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
++|++.|++||.|..+.+..+. .+|++||.|.+.++|.+|++.|||..++|+.|+|.++..
T Consensus 32 edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 32 DDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp HHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence 5789999999999999886542 489999999999999999999999999999999999864
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=5.8e-12 Score=78.26 Aligned_cols=77 Identities=25% Similarity=0.186 Sum_probs=64.8
Q ss_pred ccccEEEEcCCC----CCCCH----HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 036791 55 VNVSFWRCISVS----FSTTK----EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG 126 (157)
Q Consensus 55 ~~~~~l~V~nl~----~~~~~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g 126 (157)
.+..||+|.-.+ .++-+ .+|.+.|..||.|..++++.++ +||+|.+.++|.+|++ |||..++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 345677777665 23333 6799999999999999998874 8999999999999999 99999999
Q ss_pred cEEEEEeecCCCCC
Q 036791 127 RVIFVDNVRPSRRY 140 (157)
Q Consensus 127 ~~l~v~~~~~~~~~ 140 (157)
+.|+|+++++.+..
T Consensus 76 r~LkV~lkt~dW~~ 89 (91)
T 2dnr_A 76 RTITIALKSPSGPS 89 (91)
T ss_dssp EEEEEEECCCSSCS
T ss_pred eEEEEEeCCCCccc
Confidence 99999999997643
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=3.7e-11 Score=78.99 Aligned_cols=75 Identities=16% Similarity=0.088 Sum_probs=66.2
Q ss_pred ccccEEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHHhC--CCccCCcEEE
Q 036791 55 VNVSFWRCISVSFS-TTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSST-EEEAQKALVDMN--GKLLDGRVIF 130 (157)
Q Consensus 55 ~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~-~~~a~~ai~~l~--g~~~~g~~l~ 130 (157)
.....|||+||++. +++++|+++|+.||.|..|.+..+.. .|||.|.+ ..+|..|+..|+ +..|.|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 45678999999999 99999999999999999999988754 39999999 899999999995 7778998888
Q ss_pred EEeec
Q 036791 131 VDNVR 135 (157)
Q Consensus 131 v~~~~ 135 (157)
++...
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 87654
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.16 E-value=1.5e-10 Score=83.63 Aligned_cols=68 Identities=19% Similarity=0.283 Sum_probs=60.5
Q ss_pred CCHHHHHHHHhcCCCeeEEEEeecC----CCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecC
Q 036791 69 TTKEMLADAFSQFGQVTEATIIMDI----GKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRP 136 (157)
Q Consensus 69 ~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~ 136 (157)
-.+++|++.|++||.|..+.++.+. .+++++|++||+|.+.++|.+|+..|||..++||.|++.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3457899999999999999998554 3458999999999999999999999999999999999999753
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.1e-10 Score=72.88 Aligned_cols=73 Identities=15% Similarity=0.090 Sum_probs=62.2
Q ss_pred ccccEEEEcCCCCC-----CCH----HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC
Q 036791 55 VNVSFWRCISVSFS-----TTK----EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLD 125 (157)
Q Consensus 55 ~~~~~l~V~nl~~~-----~~~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~ 125 (157)
.+..||+|.-++.. +-+ .+|.+.|..||.+..++++.++ +||+|.+.++|.+||+ |||..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45678888877642 322 5689999999999999999884 9999999999999999 9999999
Q ss_pred CcEEEEEeecC
Q 036791 126 GRVIFVDNVRP 136 (157)
Q Consensus 126 g~~l~v~~~~~ 136 (157)
|+.|+|.+..+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998765
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.82 E-value=2.5e-08 Score=63.63 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=65.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcC-----CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 036791 56 NVSFWRCISVSFSTTKEMLADAFSQF-----GQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIF 130 (157)
Q Consensus 56 ~~~~l~V~nl~~~~~~~~l~~~f~~~-----G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~ 130 (157)
+.++|-+-|||..+++..++.+...+ |.+..+.+..|- +-|+|+|.+...|-+|.-+|+|..|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35678899999999999999999999 999999988873 4599999999999999999999999999999
Q ss_pred EEe
Q 036791 131 VDN 133 (157)
Q Consensus 131 v~~ 133 (157)
+.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 864
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=0.00041 Score=43.70 Aligned_cols=76 Identities=16% Similarity=0.118 Sum_probs=61.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhc---C--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQ---F--GQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~---~--G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v 131 (157)
..+|.|.|||+.+.++.|+-+|++ . |.|..+.... +-|+|+|.+.+.|++.++. ....|+|.+|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 457999999999999999999986 2 5777776533 3589999999999999874 367899999999
Q ss_pred EeecCCCCCC
Q 036791 132 DNVRPSRRYN 141 (157)
Q Consensus 132 ~~~~~~~~~~ 141 (157)
.-..++..+.
T Consensus 79 ~P~~~~~~~r 88 (104)
T 2dhx_A 79 RPAPPRAPAR 88 (104)
T ss_dssp EECCCCCCCC
T ss_pred EcCCCCCcce
Confidence 8877665443
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=5.4e-05 Score=47.88 Aligned_cols=74 Identities=9% Similarity=-0.019 Sum_probs=61.2
Q ss_pred cEEEEcCCCCCCCH-----HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q 036791 58 SFWRCISVSFSTTK-----EMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVD 132 (157)
Q Consensus 58 ~~l~V~nl~~~~~~-----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 132 (157)
.+|+|.||+.++-. ..++.+|..|+++..-...+.- .-..|.|.+.++|.+|-..||+..++|++|+|-
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 46899999886521 5679999999988887666542 136899999999999999999999999999999
Q ss_pred eecCC
Q 036791 133 NVRPS 137 (157)
Q Consensus 133 ~~~~~ 137 (157)
++.+.
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 98854
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.71 E-value=0.00015 Score=45.19 Aligned_cols=53 Identities=23% Similarity=0.218 Sum_probs=45.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDM 119 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l 119 (157)
.-+++ ++|..+...||.++|+.|| -..|.++.|- .|||.|.+++.|..|+..+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 34555 9999999999999999999 4577888772 5999999999999999876
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.55 E-value=0.00063 Score=42.09 Aligned_cols=68 Identities=12% Similarity=0.010 Sum_probs=56.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCC--cceEEEEEeCCHHHHHHHHHHhCCCccC
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNR--SKGYGYVTSSTEEEAQKALVDMNGKLLD 125 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~ai~~l~g~~~~ 125 (157)
++|-|++||+.++++++.+.+.....+.....+..+.+.+ ...-|+|.|.+.+++..-.+.++|..+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4688999999999999999999988777667766654433 3467999999999999999999999863
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.55 E-value=0.00014 Score=45.49 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=45.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 036791 60 WRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMN 120 (157)
Q Consensus 60 l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~ 120 (157)
+++ ++|..+...||.++|+.|| -..|.++.|- -|||.|.+++.|..|+..+.
T Consensus 9 ~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 9 LHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 455 9999999999999999999 5678888872 59999999999999999774
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.09 E-value=0.0045 Score=40.07 Aligned_cols=70 Identities=14% Similarity=0.274 Sum_probs=55.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC-cEEEEEee
Q 036791 57 VSFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDG-RVIFVDNV 134 (157)
Q Consensus 57 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g-~~l~v~~~ 134 (157)
..-|.|-+.|+... ..+-..|++||.|.+.... ....+-.|.|.+..+|++||.. ||..+.| -.|-|...
T Consensus 24 ~~wVtVFGFp~~~~-~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQASA-SYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGGH-HHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHHH-HHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence 45688889999864 5667789999999987651 2346899999999999999985 9999975 56667664
No 216
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.66 E-value=0.0028 Score=42.59 Aligned_cols=44 Identities=11% Similarity=0.004 Sum_probs=32.2
Q ss_pred EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q 036791 86 EATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFV 131 (157)
Q Consensus 86 ~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v 131 (157)
.+.+.++. ++.+|||||+|.+.++|++|+..+++....+..+.+
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~ 45 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTY 45 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccc
Confidence 34566653 468999999999999999999988765443333333
No 217
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.55 E-value=0.0011 Score=44.35 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=38.0
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHh-CCCccCCcEEEEEeecCC
Q 036791 95 KNRSKGYGYVTSSTEEEAQKALVDM-NGKLLDGRVIFVDNVRPS 137 (157)
Q Consensus 95 ~~~~~g~afv~f~~~~~a~~ai~~l-~g~~~~g~~l~v~~~~~~ 137 (157)
..+.+|+++|+|.+.++|++|++.+ ||..++| .+.+.++.++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 3577899999999999999999999 9999999 9999988764
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.37 E-value=0.008 Score=37.45 Aligned_cols=68 Identities=9% Similarity=-0.028 Sum_probs=49.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCC--cceEEEEEeCCHHHHHHHHHHhCCCccC
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNR--SKGYGYVTSSTEEEAQKALVDMNGKLLD 125 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~ai~~l~g~~~~ 125 (157)
-+|-|+.||+.+|++++.+.+...-.+.....+..+.+.+ .-.-|+|.|.+.++...-.+.++|..+-
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 3588999999999999888777654443322333222221 2356899999999999999999999863
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.29 E-value=0.0037 Score=41.10 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=54.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEE-EEeec--------CCCC-----CcceEEEEEeCCHHHHHHHHHHhCCCc
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEA-TIIMD--------IGKN-----RSKGYGYVTSSTEEEAQKALVDMNGKL 123 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~-~~~~~--------~~~~-----~~~g~afv~f~~~~~a~~ai~~l~g~~ 123 (157)
.-|.|-+.|++.... +-+.|++||.|.+- ....+ +... ....+-.|.|.+..+|.+||.. ||..
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAV 85 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCE
T ss_pred eEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeE
Confidence 457788888887655 55679999998762 11100 0001 1356789999999999999985 9999
Q ss_pred cCCcEEEEEeec
Q 036791 124 LDGRVIFVDNVR 135 (157)
Q Consensus 124 ~~g~~l~v~~~~ 135 (157)
+.|..|-|....
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999888887764
No 220
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=95.32 E-value=0.0083 Score=38.23 Aligned_cols=55 Identities=11% Similarity=0.060 Sum_probs=17.0
Q ss_pred HHHHHHhccccccCcccccccCCceeceecccccccCCCcchhhccccccEEEEcCCCCCCCHHH
Q 036791 9 TRKIQQFNSYFTEDSLLSFSSKPYQVVNYFSLHCIVRPSSDLIMQLVNVSFWRCISVSFSTTKEM 73 (157)
Q Consensus 9 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~ 73 (157)
++|+++|++..+.++.+.+... .... ..............+|||+|||+++|++.
T Consensus 59 ~~Ai~~l~~~~~~g~~i~V~~a--------~~~~--~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 59 ERAIEKMNGMLLNDRKVFVGRF--------KSRK--EREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp HHHHHHHTTCEETTEECEEEES--------SCCC--C----------------------------
T ss_pred HHHHHHcCCCEECCEEEEEEEC--------CCcc--ccccccccccCCCCceEeCCCCCCccccc
Confidence 6788889999998888865421 1100 00111112223445799999999999763
No 221
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.27 E-value=0.012 Score=46.74 Aligned_cols=55 Identities=13% Similarity=0.032 Sum_probs=40.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVD 118 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~ 118 (157)
++|+|. .|..+++.+|.++|++||.|..+..-.+ . .-|+.|+|.+.+++.+++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~---g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--F---GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--S---SEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--C---CeEEEEEeCCHHHHHHHHhc
Confidence 689997 7999999999999999999999866543 2 37999999999998877543
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.47 E-value=0.86 Score=36.58 Aligned_cols=54 Identities=22% Similarity=0.198 Sum_probs=44.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 036791 59 FWRCISVSFSTTKEMLADAFSQFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNG 121 (157)
Q Consensus 59 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g 121 (157)
.++|+ +|..+...+|.++|+.||. ..|.++-+ ..|||.|.+.+.|..++..+..
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred EEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 45555 9999999999999999995 46666554 3599999999999999998853
No 223
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=86.98 E-value=0.39 Score=29.20 Aligned_cols=21 Identities=5% Similarity=0.059 Sum_probs=15.8
Q ss_pred HHHHHHHhccccccCcccccc
Q 036791 8 QTRKIQQFNSYFTEDSLLSFS 28 (157)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~~~~ 28 (157)
-++|+.++++..+.++.+++.
T Consensus 50 a~~A~~~l~g~~~~g~~l~V~ 70 (101)
T 2hvz_A 50 AEDAVRGLDGKVICGSRVRVE 70 (101)
T ss_dssp HHHHHHHHHHSCSSSCCCEEE
T ss_pred HHHHHHHHCCCeECCcEEEEE
Confidence 366777888888888887655
No 224
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=64.02 E-value=18 Score=20.54 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHhcCC-----CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeec
Q 036791 67 FSTTKEMLADAFSQFG-----QVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVR 135 (157)
Q Consensus 67 ~~~~~~~l~~~f~~~G-----~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~ 135 (157)
..+...+|-..+..-+ +|-.+.+.. .|.||+-.. +.+..++..|++..+.|+.+.|+.++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 3455566666665433 344555532 267888764 45778888899999999999988764
No 225
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=38.45 E-value=69 Score=19.72 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=49.8
Q ss_pred EEEcCCCCCCCHHHHHHHHh-cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEeecCCC
Q 036791 60 WRCISVSFSTTKEMLADAFS-QFGQVTEATIIMDIGKNRSKGYGYVTSSTEEEAQKALVDMNGKLLDGRVIFVDNVRPSR 138 (157)
Q Consensus 60 l~V~nl~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~~~~~~ 138 (157)
-+|-.++..+.-++|..... .||.-..+..... + ..|-..+-++.++|++.|+-.. .-+.|+|-...++.
T Consensus 19 kRIi~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~-E-------llIpl~sQeDLDkaIellDrss-~~kSLrIlL~~~~~ 89 (103)
T 2cu1_A 19 KRILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN-E-------LVIPLTTQDDLDKAVELLDRSI-HMKSLKILLVINGS 89 (103)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHSSCEEEEECSS-S-------SCEECCSHHHHHHHHHHHHHCS-SCCSEEEEEEECCC
T ss_pred EEEEeccCCccHHHHHHHHHHHhCCeeeEEEecc-e-------EEEeccCHHHHHHHHHHHccCC-cccceEEEEecCCC
Confidence 34556677888888766654 6898777766522 2 5788899999999999987553 33456776666664
Q ss_pred C
Q 036791 139 R 139 (157)
Q Consensus 139 ~ 139 (157)
.
T Consensus 90 ~ 90 (103)
T 2cu1_A 90 T 90 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 226
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=24.56 E-value=85 Score=22.65 Aligned_cols=33 Identities=3% Similarity=0.211 Sum_probs=25.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEee
Q 036791 58 SFWRCISVSFSTTKEMLADAFSQFGQVTEATIIM 91 (157)
Q Consensus 58 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~ 91 (157)
..+.|+|||+.++...|..++.. +.+....++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 34679999999999999999877 6555544433
No 227
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=29.61 E-value=17 Score=22.63 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcc-eEEEEEeCCHHHHHHHHHHhCCCc
Q 036791 68 STTKEMLADAFSQFGQVTEATIIMDIGKNRSK-GYGYVTSSTEEEAQKALVDMNGKL 123 (157)
Q Consensus 68 ~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~-g~afv~f~~~~~a~~ai~~l~g~~ 123 (157)
...++++..+..+.+ +..+.+.....+|+.. -.-+-.|.+.++|.+|+..|....
T Consensus 33 ~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 33 SSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 344566777666665 3344444332233321 223458899999999999886443
No 228
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=22.63 E-value=29 Score=25.26 Aligned_cols=33 Identities=9% Similarity=0.131 Sum_probs=25.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEee
Q 036791 59 FWRCISVSFSTTKEMLADAFSQFGQVTEATIIM 91 (157)
Q Consensus 59 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~ 91 (157)
...|+|||+.++..-|..++.....+..+.++.
T Consensus 116 ~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 116 LRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp EEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred eEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 467999999999999999987655555554444
No 229
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=21.13 E-value=2e+02 Score=19.45 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=30.5
Q ss_pred CHHHHHHHH--hcCCCeeEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHH
Q 036791 70 TKEMLADAF--SQFGQVTEATIIMDIGKNRSKGYGYVTSS-TEEEAQKALV 117 (157)
Q Consensus 70 ~~~~l~~~f--~~~G~i~~~~~~~~~~~~~~~g~afv~f~-~~~~a~~ai~ 117 (157)
....|.+.| +.|.++ ++..+.++ .-+.|++.|.|. +-.....|+.
T Consensus 34 s~~~l~~~~~~~~F~p~-kv~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 34 SGSKLRDEYILRGFNPT-RVRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CSHHHHHHHHHTTCCCS-EEEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCc-eeEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 446788877 889765 45555553 347899999997 4455555554
Done!