BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036793
         (338 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DMA|A Chain A, Crystal Structure Of An Exopolyphosphatase-Related Protein
           From Bacteroides Fragilis. Northeast Structural Genomics
           Target Bfr192
          Length = 343

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 293 QLVKISLRSVDSEDTTAIAQE-FGGGGHRNAS 323
           + +KISLRSV       +A E F GGGH NAS
Sbjct: 284 KXIKISLRSVGKFPCNRLAAEFFNGGGHLNAS 315


>pdb|3OW1|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With Mg
 pdb|3OW1|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With Mg
 pdb|3OW1|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With Mg
 pdb|3OW1|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With Mg
 pdb|3OW1|E Chain E, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With Mg
 pdb|3OW1|F Chain F, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With Mg
 pdb|3OW1|G Chain G, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With Mg
 pdb|3OW1|H Chain H, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With Mg
 pdb|3P93|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With
           Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
 pdb|3P93|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With
           Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
 pdb|3P93|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With
           Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
 pdb|3P93|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With
           Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
 pdb|3P93|E Chain E, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With
           Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
 pdb|3P93|F Chain F, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With
           Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
 pdb|3P93|G Chain G, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With
           Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
 pdb|3P93|H Chain H, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With
           Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
 pdb|3PK7|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens With Mg And Glycerol Bound
           In The Active Site
 pdb|3PK7|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens With Mg And Glycerol Bound
           In The Active Site
 pdb|3PK7|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens With Mg And Glycerol Bound
           In The Active Site
 pdb|3PK7|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens With Mg And Glycerol Bound
           In The Active Site
 pdb|3PK7|E Chain E, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens With Mg And Glycerol Bound
           In The Active Site
 pdb|3PK7|F Chain F, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens With Mg And Glycerol Bound
           In The Active Site
 pdb|3PK7|G Chain G, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens With Mg And Glycerol Bound
           In The Active Site
 pdb|3PK7|H Chain H, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens With Mg And Glycerol Bound
           In The Active Site
 pdb|3QKE|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With Mg And
           D-Gluconate
 pdb|3QKE|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With Mg And
           D-Gluconate
 pdb|3QKE|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With Mg And
           D-Gluconate
 pdb|3QKE|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With Mg And
           D-Gluconate
 pdb|3QKE|E Chain E, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With Mg And
           D-Gluconate
 pdb|3QKE|F Chain F, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With Mg And
           D-Gluconate
 pdb|3QKE|G Chain G, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With Mg And
           D-Gluconate
 pdb|3QKE|H Chain H, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With Mg And
           D-Gluconate
 pdb|3RGT|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With
           D-Arabinohydroxamate
 pdb|3RGT|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With
           D-Arabinohydroxamate
 pdb|3RGT|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With
           D-Arabinohydroxamate
 pdb|3RGT|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens Complexed With
           D-Arabinohydroxamate
          Length = 405

 Score = 28.9 bits (63), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 146 LDNGLQLHREFERLSLLFDYIEDGDLWRW 174
           +D  L     +ER SL  + +EDG LW W
Sbjct: 377 IDEELAAKYPYERASLPVNRLEDGTLWHW 405


>pdb|3QKF|A Chain A, Crystal Structure Of The Mutant P317a Of D-Mannonate
           Dehydratase From Chromohalobacter Salexigens Complexed
           With Mg And D-Gluconate
 pdb|3QKF|B Chain B, Crystal Structure Of The Mutant P317a Of D-Mannonate
           Dehydratase From Chromohalobacter Salexigens Complexed
           With Mg And D-Gluconate
 pdb|3QKF|C Chain C, Crystal Structure Of The Mutant P317a Of D-Mannonate
           Dehydratase From Chromohalobacter Salexigens Complexed
           With Mg And D-Gluconate
 pdb|3QKF|D Chain D, Crystal Structure Of The Mutant P317a Of D-Mannonate
           Dehydratase From Chromohalobacter Salexigens Complexed
           With Mg And D-Gluconate
 pdb|3QKF|E Chain E, Crystal Structure Of The Mutant P317a Of D-Mannonate
           Dehydratase From Chromohalobacter Salexigens Complexed
           With Mg And D-Gluconate
 pdb|3QKF|F Chain F, Crystal Structure Of The Mutant P317a Of D-Mannonate
           Dehydratase From Chromohalobacter Salexigens Complexed
           With Mg And D-Gluconate
 pdb|3QKF|G Chain G, Crystal Structure Of The Mutant P317a Of D-Mannonate
           Dehydratase From Chromohalobacter Salexigens Complexed
           With Mg And D-Gluconate
 pdb|3QKF|H Chain H, Crystal Structure Of The Mutant P317a Of D-Mannonate
           Dehydratase From Chromohalobacter Salexigens Complexed
           With Mg And D-Gluconate
          Length = 405

 Score = 28.9 bits (63), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 146 LDNGLQLHREFERLSLLFDYIEDGDLWRW 174
           +D  L     +ER SL  + +EDG LW W
Sbjct: 377 IDEELAAKYPYERASLPVNRLEDGTLWHW 405


>pdb|4F4R|A Chain A, Crystal Structure Of D-Mannonate Dehydratase Homolog From
           Chromohalobacter Salexigens (Target Efi-502114), With
           Bound Na, Ordered Loop
          Length = 426

 Score = 28.9 bits (63), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 146 LDNGLQLHREFERLSLLFDYIEDGDLWRW 174
           +D  L     +ER SL  + +EDG LW W
Sbjct: 398 IDEELAAKYPYERASLPVNRLEDGTLWHW 426


>pdb|3BSM|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens
 pdb|3BSM|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens
 pdb|3BSM|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens
 pdb|3BSM|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
           Chromohalobacter Salexigens
          Length = 413

 Score = 28.9 bits (63), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 146 LDNGLQLHREFERLSLLFDYIEDGDLWRW 174
           +D  L     +ER SL  + +EDG LW W
Sbjct: 377 IDEELAAKYPYERASLPVNRLEDGTLWHW 405


>pdb|3DEV|A Chain A, Crystal Structure Of Sh1221 Protein From Staphylococcus
           Haemolyticus, Northeast Structural Genomics Consortium
           Target Shr87
 pdb|3DEV|B Chain B, Crystal Structure Of Sh1221 Protein From Staphylococcus
           Haemolyticus, Northeast Structural Genomics Consortium
           Target Shr87
          Length = 320

 Score = 28.9 bits (63), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 310 IAQEFGGGGHRNASSFMLSS-AEFE 333
           +A +FGGGGH NAS   + S  EFE
Sbjct: 278 VANQFGGGGHPNASGVSVYSWDEFE 302


>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli
 pdb|1KQ7|B Chain B, E315q Mutant Form Of Fumarase C From E.Coli
          Length = 467

 Score = 28.5 bits (62), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 21/42 (50%)

Query: 208 LDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCL 249
           L L   IS  +  L H  + IE +L H  E+ LGG A G  L
Sbjct: 195 LTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGL 236


>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate
 pdb|1FUO|B Chain B, Fumarase C With Bound Citrate
 pdb|1YFE|A Chain A, Crystal Structure Of Apo Fumarase C From Escherichia Coli
          Length = 467

 Score = 28.5 bits (62), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 21/42 (50%)

Query: 208 LDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCL 249
           L L   IS  +  L H  + IE +L H  E+ LGG A G  L
Sbjct: 195 LTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGL 236


>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At
           Putative Activator Site
 pdb|1FUR|B Chain B, Fumarase Mutant H188n With Bound Substrate L-Malate At
           Putative Activator Site
          Length = 467

 Score = 28.5 bits (62), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 21/42 (50%)

Query: 208 LDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCL 249
           L L   IS  +  L H  + IE +L H  E+ LGG A G  L
Sbjct: 195 LTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGL 236


>pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid
 pdb|1FUP|B Chain B, Fumarase With Bound Pyromellitic Acid
 pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid
 pdb|1FUQ|B Chain B, Fumarase With Bound Pyromellitic Acid
          Length = 472

 Score = 28.5 bits (62), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 25/56 (44%)

Query: 208 LDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDADAVAELRSEL 263
           L L   IS  +  L H  + IE +L H  E+ LGG A G  L    +    +  EL
Sbjct: 195 LTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADEL 250


>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active
           Site And A Nearby Dicarboxylic Acid Binding Site
 pdb|2FUS|B Chain B, Mutations Of Fumarase That Distinguish Between The Active
           Site And A Nearby Dicarboxylic Acid Binding Site
          Length = 467

 Score = 28.5 bits (62), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 21/42 (50%)

Query: 208 LDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCL 249
           L L   IS  +  L H  + IE +L H  E+ LGG A G  L
Sbjct: 195 LTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGL 236


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,427,174
Number of Sequences: 62578
Number of extensions: 371688
Number of successful extensions: 970
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 958
Number of HSP's gapped (non-prelim): 12
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)