BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036793
(338 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5UPH8|YR106_MIMIV Uncharacterized protein R106 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R106 PE=4 SV=1
Length = 421
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 140/324 (43%), Gaps = 41/324 (12%)
Query: 17 PSSSIMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSS-----SVPALFFPNTVYNPISP 71
P +SI N + VLYH C DG +A YF + + ++ P Y+
Sbjct: 14 PKNSIFNK-DQVDVVLYHGYCSDGFGSAFIIWYYFKTRYGLEVADKIMYIP--CYHQKDL 70
Query: 72 NNLPLHEID-----DLYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKT 126
N L +D ++ + D+ + ++ + + ++LDHHKTA + N K
Sbjct: 71 QNFSLEFLDKIRNKNVIMCDFSYKYHLLMEIINVSNTFIVLDHHKTAQIELSKIPNDLKI 130
Query: 127 IDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWRWRLENSKAFSSGL 186
+E+SG I ++YF F D + + +I+D D+W +++ + F +
Sbjct: 131 FCLEKSGVGITWEYF---FPD---------KPIPKFLAHIQDRDIWTYKVPQTSEFITYF 178
Query: 187 KDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAH-SYEIVLGGEAF 245
+ EF F L E+ + ++ I G L +++ ++ + + SY I
Sbjct: 179 YEQ--EFDFNLWETFLEEQI---VDKAIDCGSKWLEYQKIIMSKIIKRTSYVIQNVNNKL 233
Query: 246 GHCLAVDADAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSV-DS 304
L ++ E +S+LG++L G + V+ +++ SLRS D
Sbjct: 234 SIVLYCNS---PEFKSDLGNRLLYHFP----FGDFSCVWDYSLYKDESYY--SLRSTNDR 284
Query: 305 EDTTAIAQEFGGGGHRNASSFMLS 328
D + IA +FGGGGHRNAS S
Sbjct: 285 YDVSVIATQFGGGGHRNASGLAFS 308
>sp|O31824|NRNB_BACSU Oligoribonuclease NrnB OS=Bacillus subtilis (strain 168) GN=nrnB
PE=1 SV=1
Length = 399
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 97/248 (39%), Gaps = 46/248 (18%)
Query: 102 SKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSL 161
KV ++DHHKTAL E E ++ + T A ++NG + L
Sbjct: 80 GKVKLIDHHKTALHLN-EHEWGFVQVEYDDGRLTSATSLLYGYLIENGFM--KPTNALDQ 136
Query: 162 LFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFSFQLNPCLFEQLLS-------------- 207
+ + D W W + K + L DL S Q LS
Sbjct: 137 FTELVRQYDTWEWERYDQKQ-AKRLNDLFFLLSIDEFEAKMIQRLSTHDEFFFDDFEEKL 195
Query: 208 LDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLA-VDADAVAELRSELGHQ 266
LDLE + L K+R + +T H HC+ V A++ SELG++
Sbjct: 196 LDLEDEKIERY--LRRKKREMVQTFVHE-----------HCVGIVHAES---YHSELGNR 239
Query: 267 LATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSV-DSEDTTAIAQEFGGGGHRNASSF 325
L + L+ I ++ + ++SLR++ D D + IA +GGGGH AS
Sbjct: 240 LGKDNPHLDYIAILSMGSK----------RVSLRTIHDYIDVSEIAGRYGGGGHAKASGC 289
Query: 326 MLSSAEFE 333
++ +E
Sbjct: 290 SITDEVYE 297
>sp|P0C6F1|DYH2_MOUSE Dynein heavy chain 2, axonemal OS=Mus musculus GN=Dnah2 PE=2 SV=1
Length = 4456
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 237 EIVLGGEAFGHCLAVDADAVAELRSELGHQLATKSH-DLNLRGIGAVVYRV-------PE 288
EI+L GE FG+C + A V L S QL+ + H D LR + +++ P+
Sbjct: 1967 EIILFGEGFGNC-KILAKKVYTLYSLAVQQLSRQDHYDFGLRALTSLLRYAGKKRRLQPD 2025
Query: 289 LQNDQLVKISLRSVDSEDTTAI 310
L +++++ +S+R ++ T++
Sbjct: 2026 LSDEEVLLLSMRDMNIAKLTSV 2047
>sp|Q9P225|DYH2_HUMAN Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=2 SV=3
Length = 4427
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 237 EIVLGGEAFGHCLAVDADAVAELRSELGHQLATKSH-DLNLRGIGAVVYRV-------PE 288
EI+L GE FG+C + A V L S QL+ + H D LR + +++ P+
Sbjct: 1938 EIILFGEGFGNC-KILAKKVYTLYSLAVQQLSRQDHYDFGLRALTSLLRYAGKKRRLQPD 1996
Query: 289 LQNDQLVKISLRSVDSEDTTAI 310
L +++++ +S+R ++ T++
Sbjct: 1997 LTDEEVLLLSMRDMNIAKLTSV 2018
>sp|P10676|NINAC_DROME Neither inactivation nor afterpotential protein C OS=Drosophila
melanogaster GN=ninaC PE=1 SV=2
Length = 1501
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 277 RGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEF 314
+G+ A V+R EL ND++V + ++ D E +I +E+
Sbjct: 24 QGVNAKVFRAKELDNDRIVALKIQHYDEEHQVSIEEEY 61
>sp|C6A4R7|EF1A_THESM Elongation factor 1-alpha OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=tuf PE=3 SV=1
Length = 428
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 63 NTVYNPISPNNLPLH-EIDDLYLLDYVG--PSGFVQQVSSKVSKVVILDHHKTALEAPIE 119
+ + P P + PL I D+Y + VG P G V+ KV V+I + T PI+
Sbjct: 208 DQIPEPEKPTDKPLRIPIQDVYSIKGVGTVPVGRVETGVLKVGDVIIFEPASTIFHKPIQ 267
Query: 120 GENVSKTIDM 129
GE K+I+M
Sbjct: 268 GE--VKSIEM 275
>sp|Q9V0V7|EF1A_PYRAB Elongation factor 1-alpha OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=tuf PE=3 SV=1
Length = 428
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 63 NTVYNPISPNNLPLH-EIDDLYLLDYVG--PSGFVQQVSSKVSKVVILDHHKTALEAPIE 119
+ + P P + PL I D+Y + VG P G V+ KV VVI + T PI+
Sbjct: 208 DQIPEPEKPVDKPLRIPIQDVYSIKGVGTVPVGRVETGKLKVGDVVIFEPASTIFHKPIQ 267
Query: 120 GENVSKTIDM 129
GE K+I+M
Sbjct: 268 GE--VKSIEM 275
>sp|P26751|EF1A_PYRWO Elongation factor 1-alpha OS=Pyrococcus woesei GN=tuf PE=3 SV=1
Length = 430
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 63 NTVYNPISPNNLPLH-EIDDLYLLDYVG--PSGFVQQVSSKVSKVVILDHHKTALEAPIE 119
+ + P P + PL I D+Y + VG P G V+ +V +VVI + T PI+
Sbjct: 210 DQIPEPEKPVDKPLRIPIQDVYSIKGVGTVPVGRVETGKLRVGEVVIFEPASTIFHKPIQ 269
Query: 120 GENVSKTIDM 129
GE K+I+M
Sbjct: 270 GE--VKSIEM 277
>sp|O59153|EF1A_PYRHO Elongation factor 1-alpha OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=tuf PE=3 SV=1
Length = 428
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 63 NTVYNPISPNNLPLH-EIDDLYLLDYVG--PSGFVQQVSSKVSKVVILDHHKTALEAPIE 119
+ + P P + PL I D+Y + VG P G V+ KV VVI + T PI+
Sbjct: 208 DQIPEPEKPIDKPLRIPIQDVYSIKGVGTVPVGRVETGKLKVGDVVIFEPASTIFHKPIQ 267
Query: 120 GENVSKTIDM 129
GE K+I+M
Sbjct: 268 GE--VKSIEM 275
>sp|Q8U152|EF1A_PYRFU Elongation factor 1-alpha OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=tuf PE=3 SV=1
Length = 428
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 63 NTVYNPISPNNLPLH-EIDDLYLLDYVG--PSGFVQQVSSKVSKVVILDHHKTALEAPIE 119
+ + P P + PL I D+Y + VG P G V+ +V +VVI + T PI+
Sbjct: 208 DQIPEPEKPVDKPLRIPIQDVYSIKGVGTVPVGRVETGKLRVGEVVIFEPASTIFHKPIQ 267
Query: 120 GENVSKTIDM 129
GE K+I+M
Sbjct: 268 GE--VKSIEM 275
>sp|Q5JFZ4|EF1A_PYRKO Elongation factor 1-alpha OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=tuf PE=3 SV=1
Length = 428
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 63 NTVYNPISPNNLPLH-EIDDLYLLDYVG--PSGFVQQVSSKVSKVVILDHHKTALEAPIE 119
+ + P P + PL I D+Y + VG P G V+ +V VVI + T PI+
Sbjct: 208 DQIPEPPKPVDKPLRIPIQDVYSIKGVGTVPVGRVETGVLRVGDVVIFEPASTIFHKPIQ 267
Query: 120 GENVSKTIDMERSGATIAY 138
GE K+I+M AY
Sbjct: 268 GE--VKSIEMHHEPLQEAY 284
>sp|Q8ZEB6|FUMC_YERPE Fumarate hydratase class II OS=Yersinia pestis GN=fumC PE=3 SV=1
Length = 465
Score = 32.3 bits (72), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%)
Query: 208 LDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDADAVAELRSEL 263
L L IS LSH R IE TL H E+ LGG A G L + + +E+
Sbjct: 195 LTLGQEISGWAAMLSHSVRHIEATLPHLCELALGGTAVGTGLNTHPEYAVRVANEI 250
>sp|C5A5P4|EF1A_THEGJ Elongation factor 1-alpha OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=tuf PE=3 SV=1
Length = 428
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 63 NTVYNPISPNNLPLH-EIDDLYLLDYVG--PSGFVQQVSSKVSKVVILDHHKTALEAPIE 119
+ + P P + PL I D+Y + VG P G V+ +V VVI + T PI+
Sbjct: 208 DQIPEPPKPIDKPLRIPIQDVYSIKGVGTVPVGRVETGVLRVGDVVIFEPASTIFHKPIQ 267
Query: 120 GENVSKTIDMERSGATIAY 138
GE K+I+M AY
Sbjct: 268 GE--VKSIEMHHEPLQEAY 284
>sp|B9M5V4|SYGB_GEOSF Glycine--tRNA ligase beta subunit OS=Geobacter sp. (strain FRC-32)
GN=glyS PE=3 SV=1
Length = 687
Score = 32.0 bits (71), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 242 GEAFGHCLAVDADAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRS 301
GE F VDA A++ + +E G +A ++ + G + +P L N+ K S+R
Sbjct: 90 GEGFARGQGVDASALSIIATEKGEYVAVTKKEIGVATAGLLAEILPRLINNIPFKKSMRW 149
Query: 302 VDSE 305
D E
Sbjct: 150 GDQE 153
>sp|Q8Z6R6|FUMC_SALTI Fumarate hydratase class II OS=Salmonella typhi GN=fumC PE=3 SV=1
Length = 467
Score = 31.6 bits (70), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 181 AFSSGLKDLNIEFS--FQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEI 238
A + L+D + F+ ++ + L L IS + L H R IE +L H E+
Sbjct: 166 ALTDTLRDKSHAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLRHIEHSLPHVAEL 225
Query: 239 VLGGEAFGHCL 249
LGG A G L
Sbjct: 226 ALGGTAVGTGL 236
>sp|Q8ZPL7|FUMC_SALTY Fumarate hydratase class II OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=fumC PE=3 SV=1
Length = 467
Score = 31.6 bits (70), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 181 AFSSGLKDLNIEFS--FQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEI 238
A + L+D + F+ ++ + L L IS + L H R IE +L H E+
Sbjct: 166 ALTDTLRDKSHAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLRHIEHSLPHVAEL 225
Query: 239 VLGGEAFGHCL 249
LGG A G L
Sbjct: 226 ALGGTAVGTGL 236
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,697,554
Number of Sequences: 539616
Number of extensions: 5066872
Number of successful extensions: 12873
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 12861
Number of HSP's gapped (non-prelim): 29
length of query: 338
length of database: 191,569,459
effective HSP length: 118
effective length of query: 220
effective length of database: 127,894,771
effective search space: 28136849620
effective search space used: 28136849620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)