Query 036793
Match_columns 338
No_of_seqs 151 out of 1784
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:33:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14538 putative bifunctional 100.0 6.2E-38 1.3E-42 319.7 23.4 275 24-335 365-670 (838)
2 COG0618 Exopolyphosphatase-rel 100.0 4.2E-35 9.2E-40 274.6 22.2 276 25-329 15-307 (332)
3 COG3887 Predicted signaling pr 100.0 6.9E-31 1.5E-35 250.2 20.4 274 23-334 334-638 (655)
4 COG2404 Predicted phosphohydro 99.9 8E-24 1.7E-28 190.9 12.5 273 30-326 2-307 (339)
5 PRK05427 putative manganese-de 99.9 8.3E-21 1.8E-25 176.2 20.8 169 28-208 3-186 (308)
6 TIGR00644 recJ single-stranded 99.9 7.9E-20 1.7E-24 181.9 26.3 309 7-336 42-412 (539)
7 PRK11070 ssDNA exonuclease Rec 99.8 2E-16 4.3E-21 157.0 25.3 308 6-336 56-444 (575)
8 PF01368 DHH: DHH family; Int 99.6 6.4E-16 1.4E-20 127.8 6.4 134 27-166 6-145 (145)
9 COG0608 RecJ Single-stranded D 99.6 7E-13 1.5E-17 131.0 22.8 102 6-115 23-127 (491)
10 PRK14869 putative manganese-de 99.3 7.3E-11 1.6E-15 118.4 14.0 219 80-332 305-535 (546)
11 COG1227 PPX1 Inorganic pyropho 98.9 6.9E-09 1.5E-13 94.1 10.5 152 29-188 4-169 (311)
12 PF02272 DHHA1: DHHA1 domain; 98.6 2.5E-08 5.5E-13 71.3 2.7 46 291-336 10-63 (68)
13 COG1107 Archaea-specific RecJ- 98.5 5.4E-06 1.2E-10 80.4 17.6 96 10-115 334-457 (715)
14 KOG4129 Exopolyphosphatases an 97.7 0.00043 9.4E-09 63.6 11.5 148 29-184 23-202 (377)
15 PF02724 CDC45: CDC45-like pro 93.4 0.11 2.5E-06 53.0 5.0 82 30-113 2-87 (622)
16 PRK14869 putative manganese-de 89.9 0.37 8E-06 48.6 4.3 32 27-58 3-35 (546)
17 KOG2475 CDC45 (cell division c 80.8 3.9 8.5E-05 40.3 5.9 84 28-112 24-110 (587)
18 PF03690 UPF0160: Uncharacteri 72.4 16 0.00034 34.2 7.4 49 83-145 46-94 (318)
19 cd04597 CBS_pair_DRTGG_assoc2 64.5 5.8 0.00013 30.6 2.5 22 35-56 2-23 (113)
20 COG4286 Uncharacterized conser 51.4 8 0.00017 35.1 1.3 95 27-146 3-99 (306)
21 PF03295 Pox_TAA1: Poxvirus tr 40.3 42 0.0009 23.0 3.1 23 277-302 40-62 (63)
22 cd05013 SIS_RpiR RpiR-like pro 38.8 98 0.0021 24.0 5.9 67 40-108 24-94 (139)
23 PF14595 Thioredoxin_9: Thiore 34.0 54 0.0012 26.2 3.5 52 3-62 27-79 (129)
24 KOG2948 Predicted metal-bindin 30.2 21 0.00045 32.7 0.5 49 81-143 48-96 (327)
25 cd06283 PBP1_RegR_EndR_KdgR_li 29.1 3.5E+02 0.0076 23.3 8.4 61 78-145 55-115 (267)
26 TIGR00334 5S_RNA_mat_M5 ribonu 27.5 64 0.0014 27.4 3.0 29 3-40 32-60 (174)
27 COG2248 Predicted hydrolase (m 24.3 59 0.0013 29.4 2.3 22 94-115 231-252 (304)
28 PF06821 Ser_hydrolase: Serine 20.6 52 0.0011 27.7 1.2 39 297-335 118-168 (171)
No 1
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=100.00 E-value=6.2e-38 Score=319.73 Aligned_cols=275 Identities=14% Similarity=0.179 Sum_probs=185.6
Q ss_pred ccCCCcEEEecC-CCchHHHHHHHHHHHHhcCC--CCeEEeeC--C-------CCCCC-C-CCC----C-C-------CC
Q 036793 24 MMKKKPAVLYHY-PCPDGAFAALAAHLYFSSSS--VPALFFPN--T-------VYNPI-S-PNN----L-P-------LH 77 (338)
Q Consensus 24 ~~~~~~iii~h~-~D~DgigSa~~l~~~~~~~~--~~v~~~p~--~-------~~~~~-~-~~~----~-~-------~~ 77 (338)
.....+++++|. ||+||+|||+|++++++.++ +++.++.. . .+..+ . ..+ + . ..
T Consensus 365 ~~~d~ViI~gH~nPD~DAlGSalaL~~~lk~l~~~k~~~iv~~~~~~~~~i~~~~~~l~~~~~~~~~~~i~~~~a~~~~~ 444 (838)
T PRK14538 365 KKNPHCFIMGHNHTDLDSLGSMIAFYKIALTIHPDNNNYIILDEEKLDKSLTPVYHQLIKQEHKVTLNIITTQQASKMIK 444 (838)
T ss_pred hcCCeEEEEecCCCCchHHHHHHHHHHHHHHhCCCCeEEEEEcCCCcchhHHHHHhhhhcccchhhhcccCHhhhhhccc
Confidence 344567777776 89999999999999998765 44554422 1 01000 0 001 1 0 12
Q ss_pred CCCeEEEEeCCCChHH-HHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhccc--CCccccch
Q 036793 78 EIDDLYLLDYVGPSGF-VQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFL--DNGLQLHR 154 (338)
Q Consensus 78 ~~~~viivD~~~~~~~-~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~--~~~~~~a~ 154 (338)
+.+++|+|||+.++.. ..++..+..++++||||+.+.+. ..+..+++.+...|||+|++++++..+. +++
T Consensus 445 ~~~llIvVDts~~~Ri~~~~l~~~~~~iIVIDHHr~~~~~--i~~~l~yIep~ASST~ELV~Ell~~~~~~i~l~----- 517 (838)
T PRK14538 445 KNDLIAVLDTQTKDIVNSPELLSLTNNIIVIDHHRATEEI--IPSIFSYVDSSASSTVELLVELMGFLEKEIHIT----- 517 (838)
T ss_pred cCCEEEEecCCChHhcCChhhhhcCCCEEEEeCCCCCCCC--CCccEEEEEcCcCcHHHHHHHHHHHcCCCCCCC-----
Confidence 4578999999998842 22444555689999999998753 2355666666566788999999976553 353
Q ss_pred hhHHHHHHHHHhhccccccccccchHHHHhhhhcccccccccCCHHHHHHHHccCHHHHHHhhhHHHHHHHHHHHHHHhh
Q 036793 155 EFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAH 234 (338)
Q Consensus 155 ~~~~~~~l~gi~~Dtd~~~~~~~~~~~~~~a~~l~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (338)
+.+|+++|+||++||++|+| +|+++||++|++|++.| +|+....+++..+...+ ++...++++
T Consensus 518 ~~eAt~LyaGI~tDTg~F~~-~Tt~rTFeaAA~L~~~G----AD~~~V~~~l~~~l~~~------------~l~~~ll~~ 580 (838)
T PRK14538 518 AFEASIMYAGILIDTNAFIY-RTSSRTFEVASKLKDLG----ADAIEVKSWLRKDFDKV------------LEINKLISK 580 (838)
T ss_pred HHHHHHHHhHHHHHcCCccc-CCCHHHHHHHHHHHHcC----CCHHHHHHHHhCCHHHH------------HHHHHHHhc
Confidence 67888999999999999999 69999999999999999 66665566665554331 222233333
Q ss_pred hhhheeccccccceEEEeccchH--HHHHHHHHHHhhhcccCCcceeEEEEEEeeeecCCCeEEEEEecCCCCCHHHHHh
Q 036793 235 SYEIVLGGEAFGHCLAVDADAVA--ELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQ 312 (338)
Q Consensus 235 ~~~~~~~~~~~~~~~~v~~~~~~--~~~s~~~~~l~~~~~~~~i~~v~~~v~~~~e~~~~~~~kvSlRS~~~idv~~IA~ 312 (338)
.... .+ .+. ..+..+..+ ...+.+.+.+. .++|+.+++++. +. .++++++|+||++.+||+.||+
T Consensus 581 ~ei~--~~-~iA--ia~~~e~~~~~~~~a~~ad~Ll------~I~gv~asfV~~-e~-~d~~i~ISaRS~g~inVq~Iae 647 (838)
T PRK14538 581 MEIF--MD-RFA--IIKSEEIYDNRSFLAQVAESVL------NIQNVDAAFMIA-KI-SDNTIAISARSYNEINVQTIME 647 (838)
T ss_pred cEEe--cC-cEE--EEEEhHHhhccchHHHHHHHHh------cccCeeEEEEEE-EE-cCCEEEEEEEeCCCCCHHHHHH
Confidence 2211 11 122 222111111 12344455544 678888876665 44 4678999999998899999999
Q ss_pred HcCCCccccccccccchhhhccc
Q 036793 313 EFGGGGHRNASSFMLSSAEFERW 335 (338)
Q Consensus 313 ~fGGGGH~~AAG~~~~~~~~~~~ 335 (338)
+||||||++||||++++.++++.
T Consensus 648 ~~GGGGH~~AAGaqi~~~tlee~ 670 (838)
T PRK14538 648 QMEGGGHLNSAATQIKGTNIKTV 670 (838)
T ss_pred HhCCCccHhhheEEeCCCCHHHH
Confidence 99999999999999987666554
No 2
>COG0618 Exopolyphosphatase-related proteins [General function prediction only]
Probab=100.00 E-value=4.2e-35 Score=274.56 Aligned_cols=276 Identities=18% Similarity=0.149 Sum_probs=180.6
Q ss_pred cCCCcEEEecC-CCchHHHHHHHHHHHHhcCCCCeEEeeCC---CCC------CCC--CC---CCCCCCCCeEEEEeCCC
Q 036793 25 MKKKPAVLYHY-PCPDGAFAALAAHLYFSSSSVPALFFPNT---VYN------PIS--PN---NLPLHEIDDLYLLDYVG 89 (338)
Q Consensus 25 ~~~~~iii~h~-~D~DgigSa~~l~~~~~~~~~~v~~~p~~---~~~------~~~--~~---~~~~~~~~~viivD~~~ 89 (338)
...++++++|. ||+||+|||++|+.++++.+++..+++.. ... .+. .. +.+..+++.+++||+++
T Consensus 15 ~~~~i~i~~H~nPD~DalgSa~aL~~ll~~~~~~~~v~~~G~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~iivDt~~ 94 (332)
T COG0618 15 AHDKILILTHENPDPDALGSALALAELLKDLGKNKEVLYVGPITHPENRAFLNLLGDELERIEDDPLDDYDLVIIVDTAN 94 (332)
T ss_pred cCCeEEEEeCCCCCccHHHHHHHHHHHHHHhCCCceEEEecccCCcchHhhhhhcccccccccCCCcccCCEEEEECCCC
Confidence 34566677776 89999999999999999988744443221 000 000 11 11224578999999999
Q ss_pred ChHHHHHHhhCC-CcEEEEcCCCC-CCCCCCCCCCcccccCCCCcHHHHHHHHHHhcccCCccccchhhHHHHHHHHHhh
Q 036793 90 PSGFVQQVSSKV-SKVVILDHHKT-ALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIE 167 (338)
Q Consensus 90 ~~~~~~~l~~~~-~~viviDHH~~-~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~~~~~a~~~~~~~~l~gi~~ 167 (338)
.++......... .++++||||+. ++ .+++..++.+...|||+|+++++++.+++++ +..++.+|+||++
T Consensus 95 ~~ri~~~~~~~~~~~~ivIDHH~~~~~----~~~~~~~i~~~~~ataeii~~~~~~~~~~~~-----~~~At~L~~GI~t 165 (332)
T COG0618 95 LPRIGDQELLLDSKKVIVIDHHPGNND----IYGDFVWIDPSAGATAEIIAELLKEAGIDLD-----PLVATALLLGIRT 165 (332)
T ss_pred CCCcccccccccCCceEEEeCCCCCCC----CCCceEEeCCCCchHHHHHHHHHHHcCCCcc-----HHHHHHHHhhhhh
Confidence 764322222112 58999999995 55 3567888888778999999999999998875 4567889999999
Q ss_pred ccccccccccchHHHHhhhhcccccccccCCHHHHHHHHccCHHHHHHhhhHHHHHHHHHHHHHHhhhhhheeccccccc
Q 036793 168 DGDLWRWRLENSKAFSSGLKDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGH 247 (338)
Q Consensus 168 Dtd~~~~~~~~~~~~~~a~~l~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 247 (338)
|||.|+|.+++++++.+|++|+.+|++.. ++.+.......+...+ +...++++... ..++ ...
T Consensus 166 DTg~F~~~~t~~~~~~~a~~L~~~g~~~~---~v~~~~~~~~~~~~~~-----------l~~~i~~~~~~-~~~g--~~~ 228 (332)
T COG0618 166 DTGRFRYANTTADTLAAAALLVEAGADLL---EVLELPLERSSETLLK-----------LAAYILKNNRI-VENG--VAY 228 (332)
T ss_pred cccccccCCCChhHHHHHHHHHhCCCCHH---HHHhhhhccCchHHHH-----------HHHHHHhhheE-eeCc--eEE
Confidence 99999999999999999999999997543 4545444344333222 21122221111 1111 110
Q ss_pred eEEEeccchHHHHHHHHHHHhhhcccCCcceeEEEEEEeeeecCCCeEEEEEecCCCCCHHHHHhHcCCCcccccccccc
Q 036793 248 CLAVDADAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEFGGGGHRNASSFML 327 (338)
Q Consensus 248 ~~~v~~~~~~~~~s~~~~~l~~~~~~~~i~~v~~~v~~~~e~~~~~~~kvSlRS~~~idv~~IA~~fGGGGH~~AAG~~~ 327 (338)
. .+..+....................++.++.++.++. +. .++.+++++||++..+|+++|..||||||+.|||+++
T Consensus 229 ~-~~~~~~~~~~~~~~~~~~~~v~~l~~i~~~~v~~~~~-~~-~~~~~r~~~rs~~~~~v~~~A~~~gGGGH~~AaG~~i 305 (332)
T COG0618 229 V-SLVGDILEEFGDTLAEAADFVLLLENISTAKVWGIFK-DE-EDGSIRVSDRSKGIGNVNEIAFKFGGGGHALAAGARI 305 (332)
T ss_pred E-EEeeehHhhhCCCHHHHHHHHHhhcCcceEEEEEEEE-ec-cCceEEEecccCCcHHHHHHHhhcCCCCCcccCeeEe
Confidence 1 1111111111111112222222234677788887777 32 2448999999998789999999999999999999999
Q ss_pred ch
Q 036793 328 SS 329 (338)
Q Consensus 328 ~~ 329 (338)
+.
T Consensus 306 ~~ 307 (332)
T COG0618 306 PL 307 (332)
T ss_pred cc
Confidence 86
No 3
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=99.97 E-value=6.9e-31 Score=250.18 Aligned_cols=274 Identities=21% Similarity=0.257 Sum_probs=189.5
Q ss_pred cccCCCcEEEecC-CCchHHHHHHHHHHHHhcCCCCeEEeeCC-CCCCCC------CCC-------C-------C-CCCC
Q 036793 23 NMMKKKPAVLYHY-PCPDGAFAALAAHLYFSSSSVPALFFPNT-VYNPIS------PNN-------L-------P-LHEI 79 (338)
Q Consensus 23 ~~~~~~~iii~h~-~D~DgigSa~~l~~~~~~~~~~v~~~p~~-~~~~~~------~~~-------~-------~-~~~~ 79 (338)
+.....++++.|. ||.|++|||+|+.++....++++.++... ...|-- +++ + . ..+.
T Consensus 334 i~e~d~VfImGHk~pDmDalGsAig~~~~A~~~~~~a~~v~dp~~~~pdveRai~~i~~~~e~~~~fit~~~A~~l~t~~ 413 (655)
T COG3887 334 IKESDNVFIMGHKFPDMDALGSAIGMQKFASMNNKEAFAVLDPEDMSPDVERAINEIEKNSEGKTRFITPSDAMELSTER 413 (655)
T ss_pred HhhcCcEEEEccCCCChHHHHHHHHHHHHHHhcccccEEEECccccChhHHHHHHHHHhcchhhheeccHHHHhhccCCC
Confidence 3445677777787 89999999999999999888876664321 111110 000 0 0 1245
Q ss_pred CeEEEEeCCCChHH-HHHHhhCCCcEEEEcCCCCCCCCCCCCCC-cccccCC-CCcHHHHHHHHHHhcc--cCCccccch
Q 036793 80 DDLYLLDYVGPSGF-VQQVSSKVSKVVILDHHKTALEAPIEGEN-VSKTIDM-ERSGATIAYDYFKNKF--LDNGLQLHR 154 (338)
Q Consensus 80 ~~viivD~~~~~~~-~~~l~~~~~~viviDHH~~~~~~~~~~~~-~~~~~d~-~~s~a~lv~~~l~~~~--~~~~~~~a~ 154 (338)
.++++||++.+.-. -.++.++..++||||||...++. +.+ +..|+.+ ..||++||+++++-+. .++ +
T Consensus 414 sLLviVDt~k~s~vl~~~~~~~~~kvVViDHHRR~e~f---~~n~~l~YiEsyASStsELVTEliqyq~~~~kl-----~ 485 (655)
T COG3887 414 SLLVIVDTHKPSLVLNEEFLDKFEKVVVIDHHRRDEDF---ISNPLLVYIESYASSTSELVTELIQYQPKKQKL-----S 485 (655)
T ss_pred cEEEEEecCCcceecCHHHHHhhceEEEEecccccccc---ccchHHhhhccCcccHHHHHHHHHHhCchhccc-----c
Confidence 78999999999832 34566667789999999999874 333 2334443 4578889999988543 233 2
Q ss_pred hhHHHHHHHHHhhccccccccccchHHHHhhhhcccccccccCCHHHHHHHHccCHHHHHHhhhHHHHHHHHHHHHHHhh
Q 036793 155 EFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFSFQLNPCLFEQLLSLDLESVISQGIVSLSHKQRLIEETLAH 234 (338)
Q Consensus 155 ~~~~~~~l~gi~~Dtd~~~~~~~~~~~~~~a~~l~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (338)
+.+++.+|.||+-||-+|+. +|++|||.+|++|...| +|....++++..+.+..++.. +++ ++
T Consensus 486 ~ieAt~LlAGI~vDTKnFt~-rTgsRTFdAAsyLRs~G----aDtiliq~~lk~d~e~y~k~~--------elI----~~ 548 (655)
T COG3887 486 PIEATALLAGIIVDTKNFTL-RTGSRTFDAASYLRSRG----ADTILIQKFLKTDFEEYIKRS--------ELI----EN 548 (655)
T ss_pred HHHHHHHHhceEEeccccee-ecccceehHHHHHHhcC----CcHHHHHHHHHhhHHHHHHHH--------HHH----HH
Confidence 68889999999999999987 47799999999999999 565677889888887644322 232 22
Q ss_pred hhhheeccccccceEEEecc--ch-HHHHHHHHHHHhhhcccCCcceeEEEEEEeeeecCCCeEEEEEecCCCCCHHHHH
Q 036793 235 SYEIVLGGEAFGHCLAVDAD--AV-AELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIA 311 (338)
Q Consensus 235 ~~~~~~~~~~~~~~~~v~~~--~~-~~~~s~~~~~l~~~~~~~~i~~v~~~v~~~~e~~~~~~~kvSlRS~~~idv~~IA 311 (338)
+... ++ |+..+.-.+ -. ..+.+..++.+. +|.|+.+. |+..+. .++.+.+|.||.+++||+.||
T Consensus 549 ~~~~--~~---giaiA~~~~~e~~~~viiaqAAD~lL------sm~Gv~AS-FVvak~-~~~~i~ISaRS~g~iNVQ~Im 615 (655)
T COG3887 549 ARVY--KD---GIAIATGSKDEAYSNVIIAQAADTLL------SMAGVEAS-FVVAKR-TDGLISISARSLGKINVQVIM 615 (655)
T ss_pred HHcc--cC---CeEEEecchhhhhhHHHHHHHHHHHh------hhcCceEE-EEEEEc-cCCeEEEEecccCCchHHHHH
Confidence 2221 11 122232111 01 234555566554 68889975 333344 578899999999999999999
Q ss_pred hHcCCCccccccccccchhhhcc
Q 036793 312 QEFGGGGHRNASSFMLSSAEFER 334 (338)
Q Consensus 312 ~~fGGGGH~~AAG~~~~~~~~~~ 334 (338)
+++|||||.+.|+++++...+++
T Consensus 616 EaLGGGGH~tnAAtql~~~t~~e 638 (655)
T COG3887 616 EALGGGGHLTNAATQLKDVTLEE 638 (655)
T ss_pred HHhcCcchhhHHHHhhccccHHH
Confidence 99999999999999998766543
No 4
>COG2404 Predicted phosphohydrolase (DHH superfamily) [General function prediction only]
Probab=99.91 E-value=8e-24 Score=190.91 Aligned_cols=273 Identities=21% Similarity=0.204 Sum_probs=145.3
Q ss_pred EEEecCCCchHHHHHHHHHHHHhcCCCCeEEeeCCCCCCCCCC----CCCC-CCCCeEEEEeCCCChH---H----HHHH
Q 036793 30 AVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPISPN----NLPL-HEIDDLYLLDYVGPSG---F----VQQV 97 (338)
Q Consensus 30 iii~h~~D~DgigSa~~l~~~~~~~~~~v~~~p~~~~~~~~~~----~~~~-~~~~~viivD~~~~~~---~----~~~l 97 (338)
++++.|+|+||++||+++++++++...+..+.+. .+..++ .... ...+.+.|.|+..... . +++.
T Consensus 2 y~i~sH~DlDG~acaaV~k~~~gk~vyn~n~~~~---~~~~i~~~l~~~~~~~~~~~i~i~DL~~n~d~~e~~~~~l~~~ 78 (339)
T COG2404 2 YHIYSHNDLDGYACAAVVKRFFGKNVYNANFGRE---VSARINSILESAEESGIGDAILISDLDVNLDRFEELVEKLKEA 78 (339)
T ss_pred EEEEecCCcchHHHHHHHHHHhhhcccchhhhcc---chHHHHHHHHHHHhhcccceEEEeecccCcchhHHHHHHHHHH
Confidence 5788899999999999999998652111111110 000111 1111 2235788888877652 2 2333
Q ss_pred hhCCCcEEEEcCCCCCCCC--CCCCCCcccccCCCCcHHHHHHHHHHhcccCCccccchhhHHHHHHHHHhhcccccccc
Q 036793 98 SSKVSKVVILDHHKTALEA--PIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWRWR 175 (338)
Q Consensus 98 ~~~~~~viviDHH~~~~~~--~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~~~~~a~~~~~~~~l~gi~~Dtd~~~~~ 175 (338)
..++..+.|||||+|+.+. ......+.+++|..+|+|.++|+||.+..+. +|......|+.+++++|.|.|.
T Consensus 79 ~~~~~kv~wiDHH~t~~e~~~e~~~~~v~~~~D~~rcaa~vvy~~l~~~~~~------ep~~~~~~lve~v~s~DiW~~e 152 (339)
T COG2404 79 TNKGTKVKWIDHHKTANETKEEVREAGVSVYVDDSRCAAGVVYEYLKPHEIL------EPTLFLEQLVELVRSVDIWLWE 152 (339)
T ss_pred hhcCCceEEeccccccchhHHHhhhcCcEEEECCcchhhhhhhheecccccC------CchhhHHHHHHHhcccchhhcc
Confidence 3457799999999999853 1123345567788889999999999985321 1333567789999999999999
Q ss_pred ccchHHHHhhhhcccccccccC------CHHHHHHHHc----cC-HHH-HHH-hhhHHHHHHHHHHHHHHhhhhhheecc
Q 036793 176 LENSKAFSSGLKDLNIEFSFQL------NPCLFEQLLS----LD-LES-VIS-QGIVSLSHKQRLIEETLAHSYEIVLGG 242 (338)
Q Consensus 176 ~~~~~~~~~a~~l~~~g~~~~~------~~~~~~~l~~----~~-~~~-~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (338)
.+..+-+...+.|.+.-++... +.+-+.+++. .. .++ +-. +.....+.....+....++...+.++.
T Consensus 153 ~~~~~~~~~~~~l~r~~~d~~~~~~~l~~~e~~~~~l~k~~~gi~~de~~~~~l~~~~~~~~~~~l~~~~kr~~~~~i~~ 232 (339)
T COG2404 153 DYGLGMIPQGSELNRFMFDDNQWEYLLGDGEEYKDYLKKFNAGILWDEVLDYILQIAVGRDKIETLSNASKRVVTITIDD 232 (339)
T ss_pred CcccccccchhhHHHHhhcchHHHHhhcchHHHHHHHHHhhcCcccHHHHHHHHHHHhhcchhHHHHHHHHhHhhhcccc
Confidence 8873333333333332221110 1111111111 00 011 000 011111222345555555555545544
Q ss_pred ccccceEEE-eccchHHHHHHHHHHHhhhcccCCcceeEEEEEEeeeecCCCeEEEEEecCCCCCH----HHHHh-HcCC
Q 036793 243 EAFGHCLAV-DADAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDT----TAIAQ-EFGG 316 (338)
Q Consensus 243 ~~~~~~~~v-~~~~~~~~~s~~~~~l~~~~~~~~i~~v~~~v~~~~e~~~~~~~kvSlRS~~~idv----~~IA~-~fGG 316 (338)
. ...+.+ ...+-....+..+..+... +..++.+.+ .++ .+|.||+..+|+ +++++ +|||
T Consensus 233 ~--~~~~~i~y~~~~g~~s~~~g~~~~~~-------~d~vv~~~~----~d~--~~~~~sk~~~n~~~~~a~~~~~~~gG 297 (339)
T COG2404 233 K--KHVVEIYYRGPGGYDSSIMGQTDELY-------NDFVVFVLR----SDS--GISDRSKNNANVNIDVAEIAQVQYGG 297 (339)
T ss_pred c--eeeEEEEecCCCCcchhhccchhhhh-------cceeEEecc----CCC--cccccccccCccchhHHHHHHhhcCC
Confidence 2 212222 1111001223333321111 122222222 344 689999864455 99998 8999
Q ss_pred Cccccccccc
Q 036793 317 GGHRNASSFM 326 (338)
Q Consensus 317 GGH~~AAG~~ 326 (338)
||||+|||+.
T Consensus 298 GGH~nAaG~~ 307 (339)
T COG2404 298 GGHPNAAGGK 307 (339)
T ss_pred CCCccccccH
Confidence 9999999944
No 5
>PRK05427 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.87 E-value=8.3e-21 Score=176.21 Aligned_cols=169 Identities=17% Similarity=0.084 Sum_probs=118.2
Q ss_pred CcEEEecC-CCchHHHHHHHHHHHHhcCCCCeEEeeCCCCCC-----C---CC--CCCC-CCCCC-eEEEEeCCCChHHH
Q 036793 28 KPAVLYHY-PCPDGAFAALAAHLYFSSSSVPALFFPNTVYNP-----I---SP--NNLP-LHEID-DLYLLDYVGPSGFV 94 (338)
Q Consensus 28 ~~iii~h~-~D~DgigSa~~l~~~~~~~~~~v~~~p~~~~~~-----~---~~--~~~~-~~~~~-~viivD~~~~~~~~ 94 (338)
.+++++|. ||+|++|||+++++++++.|+++.++......+ + .+ .++. ....+ .+|+||++...+..
T Consensus 3 ~i~V~gH~nPD~DaigSalala~~l~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vilVD~~~~~r~~ 82 (308)
T PRK05427 3 KILVFGHKNPDTDSICSAIAYAYLKKALGLDAEAVRLGEPNPETAFVLDYFGVEAPELITSVAGEVQVILVDHNEFQQSP 82 (308)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCCChhHHhhcccCCeEEEEeCCCcccCc
Confidence 45667776 799999999999999999888766432221110 0 01 1111 11234 89999999887543
Q ss_pred HHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcccCCccccchhhHHHHHHHHHhhccccccc
Q 036793 95 QQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWRW 174 (338)
Q Consensus 95 ~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~~~~~a~~~~~~~~l~gi~~Dtd~~~~ 174 (338)
..+ .....+++||||+.+... ....+.++++...|||+|+|+++++.+++++ +..|..+|+||++||++|++
T Consensus 83 ~~~-~~~~~~~iIDHH~~~~~~--~~~p~~~~~~~~gSt~tiv~~~~~~~~~~i~-----~~iA~~L~~gIltDT~~F~~ 154 (308)
T PRK05427 83 DDI-DEATVVGVVDHHRLGNFE--TSNPLYYRIEPVGCTATILYKMFKENGVEIP-----KEIAGLMLSAILSDTLLFKS 154 (308)
T ss_pred chh-cccCEEEEECCCcCCCCC--CCCceEEEEeeeccHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHHHhcccCC
Confidence 332 234467999999985321 1112334555567999999999999988775 44557788999999999999
Q ss_pred cccchHHHHhhhhccc-ccccccCCHH-HHHHHHcc
Q 036793 175 RLENSKAFSSGLKDLN-IEFSFQLNPC-LFEQLLSL 208 (338)
Q Consensus 175 ~~~~~~~~~~a~~l~~-~g~~~~~~~~-~~~~l~~~ 208 (338)
+++++++++++.+|.+ .|+ |+. +++++++.
T Consensus 155 ~~tt~~d~~~a~~L~~~~g~----d~~~~~~~l~~~ 186 (308)
T PRK05427 155 PTTTEQDKAAAEELAEIAGV----DIEAYGLEMLKA 186 (308)
T ss_pred CCCCHHHHHHHHHHHHHcCC----CHHHHHHHHHHh
Confidence 9999999999999995 884 554 66777663
No 6
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=99.86 E-value=7.9e-20 Score=181.87 Aligned_cols=309 Identities=17% Similarity=0.143 Sum_probs=161.7
Q ss_pred HHHHHHHhhccCCccccccCCCcEEEecCCCchHHHHHHHHHHHHhcCCCCeEE-eeCCCCC--CCC---CCCCCCCCCC
Q 036793 7 AMVAAIARAIPSSSIMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALF-FPNTVYN--PIS---PNNLPLHEID 80 (338)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~iii~h~~D~DgigSa~~l~~~~~~~~~~v~~-~p~~~~~--~~~---~~~~~~~~~~ 80 (338)
+++++|.+++ .+...|+|++|.|+||++|+++|+.++++.|+++.+ +|..... .+. ++++...+.+
T Consensus 42 ~a~~~i~~~i--------~~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~~v~~~ip~r~~~~yg~~~~~i~~~~~~~~~ 113 (539)
T TIGR00644 42 KAVERIIEAI--------ENNEKILIFGDYDVDGITSTAILVEFLKDLGVNVDYYIPNRITEGYGLSPEALREAIENGVS 113 (539)
T ss_pred HHHHHHHHHH--------hcCCeEEEEEccCCCcHHHHHHHHHHHHHCCCceEEEeCCCCcccCCCCHHHHHHHHhcCCC
Confidence 3455565555 346678888888999999999999999999987654 4543211 111 1122223568
Q ss_pred eEEEEeCCCChH-HHHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCC---------CcHHHHHHHHHHhcccCCcc
Q 036793 81 DLYLLDYVGPSG-FVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDME---------RSGATIAYDYFKNKFLDNGL 150 (338)
Q Consensus 81 ~viivD~~~~~~-~~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~---------~s~a~lv~~~l~~~~~~~~~ 150 (338)
++|+||++..+. ..+.+.+.+..+++||||.+++.. +....++.+.. -|+|.++|.+++........
T Consensus 114 LiI~vD~G~~~~~~~~~~~~~g~~vIviDHH~~~~~~---~~~~~~vnP~~~~~~~p~~~l~gagva~~l~~al~~~~~~ 190 (539)
T TIGR00644 114 LIITVDNGISAHEEIDYAKELGIDVIVTDHHEPPEDL---PEAAAIVNPNRPDCDYPNKELAGAGVAFKLCTALDEELPK 190 (539)
T ss_pred EEEEeCCCcccHHHHHHHHhcCCCEEEECCCCCCCCC---CCccEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHHhcc
Confidence 999999999983 334445567789999999987743 22223333221 27788999988865432211
Q ss_pred ccchhhHHHHH-HHHHhhcccccc-------------cc---ccchHHHHhhhhccc-------ccccc---------cC
Q 036793 151 QLHREFERLSL-LFDYIEDGDLWR-------------WR---LENSKAFSSGLKDLN-------IEFSF---------QL 197 (338)
Q Consensus 151 ~~a~~~~~~~~-l~gi~~Dtd~~~-------------~~---~~~~~~~~~a~~l~~-------~g~~~---------~~ 197 (338)
+.....+.+.+ .+|.+.|---.. .. ++.-+.+...+.+-. .+|.+ ..
T Consensus 191 ~~~~~~~~ldl~aigtiaD~~~l~g~NR~iv~~Gl~~l~~~~~~gl~~Ll~~~~~~~~~i~~~~i~f~iaP~iNA~GR~~ 270 (539)
T TIGR00644 191 LKPDLLDLLDLVAIGTIADVMPLTGENRALVKKGLKALRKGKRPGLKALLKVAGFNGKPLSSTDIGFSIGPRINAAGRLG 270 (539)
T ss_pred cchhHHHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCCcHHHeeeeeecccccccccC
Confidence 00000111111 134443322111 11 111111111110000 01111 13
Q ss_pred CHHHHHHHH-ccCHHH---HHHhhhHHHHHHHHHHHHHHhhhhhheec-cccccceEEEeccc-hHHHHHHHHHHHhhhc
Q 036793 198 NPCLFEQLL-SLDLES---VISQGIVSLSHKQRLIEETLAHSYEIVLG-GEAFGHCLAVDADA-VAELRSELGHQLATKS 271 (338)
Q Consensus 198 ~~~~~~~l~-~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~v~~~~-~~~~~s~~~~~l~~~~ 271 (338)
++.+.-+++ ..+..+ +.+.-..+.+.++++...+.+.+....-. ......+..+..+. -+.+.+.++..+++.+
T Consensus 271 ~~~~a~~ll~~~d~~~a~~~a~~l~~~N~~Rk~l~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~Gv~GivA~rl~~~~ 350 (539)
T TIGR00644 271 DASLAVELLLTDDPKQARQLAEELDELNEERKKIEQEVLAEAEKIAEANLLPNDSVIVVAGENWHPGVLGIVASRLAETF 350 (539)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcEEEEEeCCCCCchHHHHHHHHHHHH
Confidence 344333343 333332 22223334445555544444332211000 00000112222222 2335666777777654
Q ss_pred ccCCcceeEEEEEEeeeecCCCe-EEEEEecCCCCCHHHHHhH----c--CCCccccccccccchhhhcccc
Q 036793 272 HDLNLRGIGAVVYRVPELQNDQL-VKISLRSVDSEDTTAIAQE----F--GGGGHRNASSFMLSSAEFERWK 336 (338)
Q Consensus 272 ~~~~i~~v~~~v~~~~e~~~~~~-~kvSlRS~~~idv~~IA~~----f--GGGGH~~AAG~~~~~~~~~~~~ 336 (338)
.. ++ +++.. .++. +|+|+||.+++|+.++.+. + .||||+.|||++++...+++|+
T Consensus 351 ~k----P~--ivls~----~~~~~~kgS~Rs~~g~nl~~~l~~~~~~~l~~~GGH~~AaG~~i~~~~~~~f~ 412 (539)
T TIGR00644 351 NK----PV--IVLAI----DEGKGAKGSARSISGIDLYDLLSELREALFLKFGGHAMAAGLTLKRENLEEFR 412 (539)
T ss_pred CC----CE--EEEEE----cCCceEEEeeccCCCCcHHHHHHHHHHhhccccCChHHcCeeEEcHHHHHHHH
Confidence 32 23 23333 2344 8999999988999887654 2 4999999999999988888775
No 7
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=99.76 E-value=2e-16 Score=157.03 Aligned_cols=308 Identities=16% Similarity=0.113 Sum_probs=167.2
Q ss_pred HHHHHHHHhhccCCccccccCCCcEEEecCCCchHHHHHHHHHHHHhcCCC-Ce-EEeeCCC--CCCCC---CCCCCCCC
Q 036793 6 HAMVAAIARAIPSSSIMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSSV-PA-LFFPNTV--YNPIS---PNNLPLHE 78 (338)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~iii~h~~D~DgigSa~~l~~~~~~~~~-~v-~~~p~~~--~~~~~---~~~~~~~~ 78 (338)
..++++|.+++ .++..|+|+.|.|.||++|++.++.+++++|. .+ .++|... +..+. ++++...+
T Consensus 56 ~~a~~ri~~ai--------~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i~~~~~~~ 127 (575)
T PRK11070 56 EKAVELLYNAL--------REGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVVDQAHARG 127 (575)
T ss_pred HHHHHHHHHHH--------HCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCCCCCHHHHHHHHhcC
Confidence 45667777777 45789999999999999999999999999987 44 4578652 22222 22333345
Q ss_pred CCeEEEEeCCCCh-HHHHHHhhCCCcEEEEcCCCCCCCCCCCCCCccccc--------CC-CCcHHHHHHHHHHhcccC-
Q 036793 79 IDDLYLLDYVGPS-GFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTI--------DM-ERSGATIAYDYFKNKFLD- 147 (338)
Q Consensus 79 ~~~viivD~~~~~-~~~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~--------d~-~~s~a~lv~~~l~~~~~~- 147 (338)
.+++|+||++..+ ..++.+.+.+..+||+|||...... +....++. +. .-|++.++|.+++...-.
T Consensus 128 ~~LiItvD~Gi~~~e~i~~a~~~gidvIVtDHH~~~~~~---P~a~a~iNP~~~~~~yp~~~L~g~Gvaf~l~~al~~~l 204 (575)
T PRK11070 128 AQLIVTVDNGISSHAGVAHAHALGIPVLVTDHHLPGETL---PAADAIINPNLRDCNFPSKSLAGVGVAFYLMLALRAFL 204 (575)
T ss_pred CCEEEEEcCCcCCHHHHHHHHHCCCCEEEECCCCCCCCC---CCCeEEECCCCcCCCCCCCcchHHHHHHHHHHHHHHHh
Confidence 6899999999998 5566667778899999999876643 11111111 11 128888888766543100
Q ss_pred ----------Cc-cccchhhHHHHHH-HHHhhcc-------------cccccc----ccchHHHHhhhhcc-------cc
Q 036793 148 ----------NG-LQLHREFERLSLL-FDYIEDG-------------DLWRWR----LENSKAFSSGLKDL-------NI 191 (338)
Q Consensus 148 ----------~~-~~~a~~~~~~~~l-~gi~~Dt-------------d~~~~~----~~~~~~~~~a~~l~-------~~ 191 (338)
.+ ..+ .+.+.+. +|.+.|- |.-... +++-+.+...+.+- ..
T Consensus 205 ~~~~~~~~~~~~~~~l---~~~LdLvAlgTIADvvpL~~eNR~lVk~GL~~l~~~~~~~Gl~aL~~~~~~~~~~i~~~~i 281 (575)
T PRK11070 205 RDQGWFDERGIAIPNL---AELLDLVALGTVADVVPLDANNRILVWQGLSRIRAGKCRPGIKALLEVANRDAQKLAASDL 281 (575)
T ss_pred hhccccccccCCcccH---HHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHccCCCHHHHHHHHHhCCCCCCCchhhe
Confidence 00 000 0111111 2222221 111111 11112221111110 01
Q ss_pred cccc---------cCCHHHHHH-HHccCHHH---HHHhhhHHHHHHHHHHHHHHhhhhhhe----eccccccceEEEecc
Q 036793 192 EFSF---------QLNPCLFEQ-LLSLDLES---VISQGIVSLSHKQRLIEETLAHSYEIV----LGGEAFGHCLAVDAD 254 (338)
Q Consensus 192 g~~~---------~~~~~~~~~-l~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~v~~~ 254 (338)
+|.. -.++...-+ |+..+..+ +.+.-..+++.++++-..+++.+.... ...........+..+
T Consensus 282 ~F~iaPriNAaGRl~~a~~av~lLl~~d~~~a~~la~~l~~~N~~Rk~~e~~i~~~a~~~~~~~~~~~~~~~~~ivv~~~ 361 (575)
T PRK11070 282 GFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQVEALTLCEKLERSSDTLPYGLAMYHP 361 (575)
T ss_pred eEEeeccccccccccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcEEEEEeC
Confidence 1111 033333233 33444432 333344455555555444443332110 000001112333333
Q ss_pred c-hHHHHHHHHHHHhhhcccCCcceeEEEEEEeeeecCCCeEEEEEecCCCCCHHHHHhH--------c-CCCccccccc
Q 036793 255 A-VAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQE--------F-GGGGHRNASS 324 (338)
Q Consensus 255 ~-~~~~~s~~~~~l~~~~~~~~i~~v~~~v~~~~e~~~~~~~kvSlRS~~~idv~~IA~~--------f-GGGGH~~AAG 324 (338)
+ -+.+...++..+++++... + +|+.. + .++..|.|.||.+++|+.+..+. | ..|||+.|||
T Consensus 362 ~wh~GViGIVAsrl~e~y~rP----~--ivls~-~--~~g~~kGS~RSi~g~~l~~aL~~~~~~~~~ll~~fGGH~~AaG 432 (575)
T PRK11070 362 EWHQGVVGILASRIKERFHRP----V--IAFAP-A--GDGTLKGSGRSIQGLHMRDALERLDTLYPGLILKFGGHAMAAG 432 (575)
T ss_pred CCCccHHHHHHHHHHHHHCCC----E--EEEEE-c--CCCeEEEEEeCCCCCcHHHHHHHhhhcccchhhccCChHHhCc
Confidence 2 2346677777777765432 2 23332 1 24789999999988998765431 2 5899999999
Q ss_pred cccchhhhcccc
Q 036793 325 FMLSSAEFERWK 336 (338)
Q Consensus 325 ~~~~~~~~~~~~ 336 (338)
++++.+.++.|+
T Consensus 433 ~ti~~e~l~~f~ 444 (575)
T PRK11070 433 LSLEEDKFELFQ 444 (575)
T ss_pred ceeCHHHHHHHH
Confidence 999988888775
No 8
>PF01368 DHH: DHH family; InterPro: IPR001667 This is a domain of predicted phosphoesterases that includes Drosophila prune protein and bacterial RecJ exonuclease []. The RecJ protein of Escherichia coli plays an important role in a number of DNA repair and recombination pathways. RecJ catalyzes processive degradation of single-stranded DNA in a 5'-to-3' direction. Sequences highly related to those encoding RecJ can be found in many of the eubacterial genomes sequenced to date [].; GO: 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 3DEV_A 2HAW_A 1WPN_A 1WPM_B 2IW4_B 1K23_D 2EB0_A 1I74_A 2ZXR_A 2ZXO_A ....
Probab=99.62 E-value=6.4e-16 Score=127.83 Aligned_cols=134 Identities=20% Similarity=0.171 Sum_probs=84.1
Q ss_pred CCcEEEecC-CCchHHHHHHHHHHHHhcCCCCeEEeeCCCCCCCC--CCCCCCC--CCCeEEEEeCCCChHHHHHHhh-C
Q 036793 27 KKPAVLYHY-PCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPIS--PNNLPLH--EIDDLYLLDYVGPSGFVQQVSS-K 100 (338)
Q Consensus 27 ~~~iii~h~-~D~DgigSa~~l~~~~~~~~~~v~~~p~~~~~~~~--~~~~~~~--~~~~viivD~~~~~~~~~~l~~-~ 100 (338)
.++++++|. ||+||++||+++++++++.++....++........ ....... ..+.+|+||++.+++....... .
T Consensus 6 ~~i~i~~H~~~D~Dgl~Sa~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vD~~~~~~~~~~~~~~~ 85 (145)
T PF01368_consen 6 ERILIVGHINPDADGLGSAIALAKILKRLGKEVTVIPIPEGPPHEYFLFVLKYFEMNEDLIILVDCGSPDRDGEKLEELK 85 (145)
T ss_dssp SEEEEEEBSS-SHHHHHHHHHHHHHHHHTTCTEEEEEECSSTCGHHHHHHHHHTTHHHSEEEEES-SSGGGSGTTGGGTS
T ss_pred CEEEEEccCCCCchHHHHHHHHHHHHHHcCCCceEEecCCCCcchhhhhhhhhhcccceEEEEecCCccccchHHHHhcC
Confidence 445555555 59999999999999999998865554432111110 0000001 1279999999888754333322 3
Q ss_pred CCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcccCCccccchhhHHHHHHHHHh
Q 036793 101 VSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYI 166 (338)
Q Consensus 101 ~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~~~~~a~~~~~~~~l~gi~ 166 (338)
..++++||||++..... .+.....+.....|+|+++++++++.+.+++ ++.+..+++||+
T Consensus 86 ~~~viiiDHH~~~~~~~-~~~~~~~~~~~~~s~~~lv~~~~~~~~~~~~-----~~~a~ll~~Giv 145 (145)
T PF01368_consen 86 GIKVIIIDHHQPGEEDI-NPNDVNYIDESAGSTSTLVAEMLKELGIKID-----KEIATLLLAGIV 145 (145)
T ss_dssp CSEEEEEESSSSBSS----SSCEEEEETSSSHHHHHHHHHHHHTTCCHH-----HHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCcccC-CCCCCCCEeCcHHHHHHHHHHHHHHcCCCCc-----HHHHHHHHhhhC
Confidence 46889999998776420 1334444555556888899999999887663 455566778885
No 9
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=99.56 E-value=7e-13 Score=131.03 Aligned_cols=102 Identities=21% Similarity=0.167 Sum_probs=73.8
Q ss_pred HHHHHHHHhhccCCccccccCCCcEEEecCCCchHHHHHHHHHHHHhcCCCCeEE-eeCCCCCCCC-CCCCCCCCCCeEE
Q 036793 6 HAMVAAIARAIPSSSIMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALF-FPNTVYNPIS-PNNLPLHEIDDLY 83 (338)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~iii~h~~D~DgigSa~~l~~~~~~~~~~v~~-~p~~~~~~~~-~~~~~~~~~~~vi 83 (338)
..+++++..++ .+...|.|++|.|.||++|++.++.+++.+|.++.+ +|........ ++.+..+..+++|
T Consensus 23 ~~a~~~i~~ai--------~~~~~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g~~~~~~~~~~~liI 94 (491)
T COG0608 23 EKAAARIAEAI--------EKGEKILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYGAIRKLKEEGADLII 94 (491)
T ss_pred HHHHHHHHHHH--------HcCCEEEEEEecCcccHHHHHHHHHHHHHcCCceEEEeCCCccccchHHHHHHhcCCCEEE
Confidence 34555666665 457889999999999999999999999999987655 5554222110 1223445678999
Q ss_pred EEeCCCCh-HHHHHHhhCCCcEEEEcCCCCCCC
Q 036793 84 LLDYVGPS-GFVQQVSSKVSKVVILDHHKTALE 115 (338)
Q Consensus 84 ivD~~~~~-~~~~~l~~~~~~viviDHH~~~~~ 115 (338)
+||+++.. .......+.+..+||+|||+..+.
T Consensus 95 tvD~G~~~~~~i~~~~~~g~~vIVtDHH~~~~~ 127 (491)
T COG0608 95 TVDNGSGSLEEIARAKELGIDVIVTDHHPPGEE 127 (491)
T ss_pred EECCCcccHHHHHHHHhCCCcEEEECCCCCCCC
Confidence 99999998 445555556779999999955543
No 10
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.25 E-value=7.3e-11 Score=118.41 Aligned_cols=219 Identities=15% Similarity=0.127 Sum_probs=125.0
Q ss_pred CeEEEEeCCCChHHHHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcccCCccccchhhHHH
Q 036793 80 DDLYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERL 159 (338)
Q Consensus 80 ~~viivD~~~~~~~~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~~~~~a~~~~~~ 159 (338)
..+++||.....+....+ .....+.+||||+...... ...+.++.....|+|+++++++++.++.++ +..+.
T Consensus 305 ~~~iLVD~~e~~q~~~~~-~~~~i~~iiDHH~~~~~~~--~~pi~~~~~~~gst~tiv~~~~~~~~i~~~-----~~ia~ 376 (546)
T PRK14869 305 KKVILVDHNEKSQAVEGI-EEAEILEIIDHHRLGDIQT--SNPIFFRNEPVGSTSTIVARMYRENGIEPS-----PEIAG 376 (546)
T ss_pred CceEEEcCccccccccch-hhceEEEEecCCccCCCCC--CCCcEEEeeeeeeHHHHHHHHHHHcCCCCC-----HHHHH
Confidence 456778877655332222 1233467899999765321 122334444457999999999999988875 45556
Q ss_pred HHHHHHhhccccccccccchHHHHhhhhccc-ccccccCCHH-HHHHHHccCHHHHHHhhhHHHHHHHHHHHHHHhhhhh
Q 036793 160 SLLFDYIEDGDLWRWRLENSKAFSSGLKDLN-IEFSFQLNPC-LFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYE 237 (338)
Q Consensus 160 ~~l~gi~~Dtd~~~~~~~~~~~~~~a~~l~~-~g~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (338)
.+|+||++||+.|+|++++++++.++++|.+ .|+ ++. +.+++++....- .+..+...+++....
T Consensus 377 ~ll~gIlsDT~~f~~~~tt~~d~~~a~~L~~~~g~----~~~~~~~~l~~~~~~~----------~~~~~~~~l~~d~K~ 442 (546)
T PRK14869 377 LLLAAILSDTLLFKSPTTTELDREAAEWLAEIAGI----DPEEFAKEMFKAGSSL----------EGKTPEEIFNRDFKE 442 (546)
T ss_pred HHHHHHHHHhcCccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHcCCCc----------CCCCHHHHHHhcCee
Confidence 7889999999999999999999999999998 684 555 555566533210 011222223333333
Q ss_pred heeccccccceEEEeccch-------HHHHHHHHHHHhhhcccCCcceeEEEEEEeeeecCCCeEEEEEecCCCCCHHHH
Q 036793 238 IVLGGEAFGHCLAVDADAV-------AELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAI 310 (338)
Q Consensus 238 ~~~~~~~~~~~~~v~~~~~-------~~~~s~~~~~l~~~~~~~~i~~v~~~v~~~~e~~~~~~~kvSlRS~~~idv~~I 310 (338)
..+++..+++... ..... +.+...+.... ..+++.+++++...-.+++ ..-+-+-+ +-..+
T Consensus 443 ~~~~~~~v~i~~v-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~d~~~ll~tdi~~~~--s~~~~~~~--~~~~~ 510 (546)
T PRK14869 443 FTIGGVKFGVGQV-ETMDFEEFFELKEELLEALEKLR-------EEEGYDLLLLMVTDIIEEG--SELLVAGD--EKEIV 510 (546)
T ss_pred eeeCCEEEEEEEE-EecCHHHHHHHHHHHHHHHHHHH-------HhCCCCEEEEEEeccCCCC--eEEEEECC--cHHHH
Confidence 4455555654332 22222 22222222222 2345555444431111222 22333332 22336
Q ss_pred HhHcC---CCccccccccccchhhh
Q 036793 311 AQEFG---GGGHRNASSFMLSSAEF 332 (338)
Q Consensus 311 A~~fG---GGGH~~AAG~~~~~~~~ 332 (338)
.+.|| ++|+....|...++.++
T Consensus 511 ~~~~~~~~~~~~~~~~~~~srkkq~ 535 (546)
T PRK14869 511 ARAFGVPLEDNSFYLPGVVSRKKQV 535 (546)
T ss_pred HHHhCCcCcCCeEECCCCcccchhh
Confidence 67787 57888888888766554
No 11
>COG1227 PPX1 Inorganic pyrophosphatase/exopolyphosphatase [Energy production and conversion]
Probab=98.93 E-value=6.9e-09 Score=94.13 Aligned_cols=152 Identities=16% Similarity=0.107 Sum_probs=94.8
Q ss_pred cEEEecC-CCchHHHHHHHHHHHHhcCCC---CeEEeeCCC--CCC-CC--CCCCC----C-CCCCeEEEEeCCCChHHH
Q 036793 29 PAVLYHY-PCPDGAFAALAAHLYFSSSSV---PALFFPNTV--YNP-IS--PNNLP----L-HEIDDLYLLDYVGPSGFV 94 (338)
Q Consensus 29 ~iii~h~-~D~DgigSa~~l~~~~~~~~~---~v~~~p~~~--~~~-~~--~~~~~----~-~~~~~viivD~~~~~~~~ 94 (338)
.++..|. ||.|.++||++.+++....+. +...+|... +.. ++ -.+.| . .....+|+||.+..++..
T Consensus 4 ~~v~Gh~npDtDsi~Sai~~ay~~~~~~~~~~~~~~l~~~~~et~fvl~~f~~~~p~l~~~~~~~~~viLVDhNe~~qs~ 83 (311)
T COG1227 4 ILVVGHENPDTDSIASAIVYAYLLNAYGEFEAKAVRLGEPNLETAFVLDYFGVEAPKLVESVKGEKKVILVDHNEFQQSV 83 (311)
T ss_pred EEEecCCCccHHHHHHHHHHHHHHHHhhhccCCceecCCCChhHHHHHHHhccCCchhhhcccCCCcEEEEeccccccCc
Confidence 4556665 799999999998888775441 222222211 000 00 00111 1 112589999998777544
Q ss_pred HHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcccCCccccchhhHHHHHHHHHhhccccccc
Q 036793 95 QQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWRW 174 (338)
Q Consensus 95 ~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~~~~~a~~~~~~~~l~gi~~Dtd~~~~ 174 (338)
..+.+ ..-+-+||||.-..-. -.....++..+-.|++++++.++.+.++.++..+ |--++.+|+.||..|+-
T Consensus 84 ~~~~d-~~I~~IIDHHr~~~~~--t~~p~~~~~epVGctsTIv~~~~~e~~~~~~~~i-----A~LlLsaIlsDTl~fks 155 (311)
T COG1227 84 DDIED-AEILGIIDHHRLADFE--TAAPLYIRNEPVGCTSTIVYRLFKEDGIEIEKEI-----AGLLLSAILSDTLLFKS 155 (311)
T ss_pred ccccc-ceEEEEeeeeeecCcc--cCCCcEEEecCCchHHHHHHHHHHHhcCccchhH-----HHHHHHHHhhhhhcccC
Confidence 44322 3356899999987643 1222333444456888999999999998885333 33456899999999988
Q ss_pred cccchHHHHhhhhc
Q 036793 175 RLENSKAFSSGLKD 188 (338)
Q Consensus 175 ~~~~~~~~~~a~~l 188 (338)
+.++.++-.++-.|
T Consensus 156 pTtt~~D~~~a~~L 169 (311)
T COG1227 156 PTTTDTDVDIAKEL 169 (311)
T ss_pred CCcchhHHHHHHHH
Confidence 77777776555554
No 12
>PF02272 DHHA1: DHHA1 domain; InterPro: IPR003156 This domain is often found adjacent to the DHH domain, found in the RecJ-like phosphoesterase family IPR001667 from INTERPRO, and is called DHHA1 for DHH associated domain. DHHA1 is diagnostic of DHH subfamily 1 members []. This domain is also found in alanyl tRNA synthetase e.g. P00957 from SWISSPROT, suggesting that it may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.; GO: 0003676 nucleic acid binding; PDB: 1IR6_A 2ZVF_F 3G98_B 3DEV_A 2ZXR_A 2ZXO_A 2ZXP_A.
Probab=98.60 E-value=2.5e-08 Score=71.34 Aligned_cols=46 Identities=33% Similarity=0.512 Sum_probs=38.6
Q ss_pred CCCeEEEEEecCCCCCHH-HHHhHc------CCCccccccccccchhh-hcccc
Q 036793 291 NDQLVKISLRSVDSEDTT-AIAQEF------GGGGHRNASSFMLSSAE-FERWK 336 (338)
Q Consensus 291 ~~~~~kvSlRS~~~idv~-~IA~~f------GGGGH~~AAG~~~~~~~-~~~~~ 336 (338)
.++++++|+||...++.. ++++.+ +||||+.|||++++... +++|+
T Consensus 10 ~~~~~~~s~rs~~~~~~~~~~~~~~~~~~~G~GGGh~~aAg~~~~~~~~l~~~~ 63 (68)
T PF02272_consen 10 EDGKIKVSARSSKGVDDKGEILKELAEKLGGKGGGHPDAAGGSIPKPEKLEEFL 63 (68)
T ss_dssp ESSTEEEEEEESSSSTHH-HHHHHCHHHGTCEEEEESSEEEEEESCGGHHHHHH
T ss_pred cCCEEEEEEEECCchhhHHHHHHHHHHHcCCCCCCCHHHhcccCCCchhHHHHH
Confidence 478999999998778888 776665 59999999999998776 77775
No 13
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=98.55 E-value=5.4e-06 Score=80.40 Aligned_cols=96 Identities=22% Similarity=0.294 Sum_probs=62.7
Q ss_pred HHHHhhccCCccccccCCCcEEEecCCCchHHHHHHHHHHHHhcC----CCC--eE--E---eeCCCCCCC-CCC----C
Q 036793 10 AAIARAIPSSSIMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSS----SVP--AL--F---FPNTVYNPI-SPN----N 73 (338)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~iii~h~~D~DgigSa~~l~~~~~~~----~~~--v~--~---~p~~~~~~~-~~~----~ 73 (338)
..|.+|. -..++|++=||.|.||+++++++.+.+..+ +.. .. + .|.. .|+ .++ +
T Consensus 334 k~irrAV--------~egRPIiiRHHaDaDG~~agvAlE~AilplI~~~~~d~DAeyh~~KRrPsk--APfYeleDvtrD 403 (715)
T COG1107 334 KEIRRAV--------LEGRPIIIRHHADADGYCAGVALEKAILPLIEDVHPDEDAEYHLFKRRPSK--APFYELEDVTRD 403 (715)
T ss_pred HHHHHHH--------hcCCceEEecccCcccccchhhHHHHHHHHHHHhCCChhhhhHHhhcCccc--CCceeHHhhhhh
Confidence 3466666 257889999999999999999988776442 221 11 1 1211 111 122 1
Q ss_pred CC---------CCCCCeEEEEeCCCChH---HHHHHhhCCCcEEEEcCCCCCCC
Q 036793 74 LP---------LHEIDDLYLLDYVGPSG---FVQQVSSKVSKVVILDHHKTALE 115 (338)
Q Consensus 74 ~~---------~~~~~~viivD~~~~~~---~~~~l~~~~~~viviDHH~~~~~ 115 (338)
+. ..+.-++++||.+++.+ .+.++...+..+++||||-..+.
T Consensus 404 l~~aLED~~RhGqKlPL~VlvDnGsTeEDipA~~~~k~Ygi~ivVVDHH~Pde~ 457 (715)
T COG1107 404 LNFALEDAHRHGQKLPLLVLVDNGSTEEDIPAIKQLKAYGIDIVVVDHHYPDEA 457 (715)
T ss_pred HHHHHHHHHhcCCccceEEEEcCCCcccccHHHHHHHhcCCCEEEEcCCCCcch
Confidence 11 12346899999999973 45666667789999999988774
No 14
>KOG4129 consensus Exopolyphosphatases and related proteins [Energy production and conversion]
Probab=97.73 E-value=0.00043 Score=63.62 Aligned_cols=148 Identities=17% Similarity=0.095 Sum_probs=85.4
Q ss_pred cEEEecCC-CchHHHHHHHHHHHHhcC-CCCeEEeeC-----CCCCCCC-------------------CCCCCCC----C
Q 036793 29 PAVLYHYP-CPDGAFAALAAHLYFSSS-SVPALFFPN-----TVYNPIS-------------------PNNLPLH----E 78 (338)
Q Consensus 29 ~iii~h~~-D~DgigSa~~l~~~~~~~-~~~v~~~p~-----~~~~~~~-------------------~~~~~~~----~ 78 (338)
.+++.... |+|.+.||+.+++++.+. .+.+.++|- ..+ +++ .+|++.. .
T Consensus 23 hiv~GNEScDLDS~iSaltyAy~l~~~~~~e~~~vPilnIpR~el-~lr~ei~~vl~kl~Ise~~l~FrdDI~~~~~~~~ 101 (377)
T KOG4129|consen 23 HIVMGNESCDLDSFISALTYAYCLDKVHRKEVFMVPILNIPRFEL-NLRTEIFYVLEKLHISESALIFRDDIELLELNIS 101 (377)
T ss_pred EEEeCCccccHHHHHHHHHHHHHHHHhccCCceEEEEeccccccC-CcchhHHHHHHHcCCChHHeeehhhhhccccccc
Confidence 45555554 999999999998888776 445555552 111 110 1233211 1
Q ss_pred CC-eEEEEeCCCChHHHHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcccCC-ccccchhh
Q 036793 79 ID-DLYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDN-GLQLHREF 156 (338)
Q Consensus 79 ~~-~viivD~~~~~~~~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~-~~~~a~~~ 156 (338)
.. .++.||.+.+...- .......-..+||||+..... +..-..+++...|||+||.+|+.+..-+. +.+. +
T Consensus 102 g~l~~~LVDhn~l~~~d-~~~e~~~i~~IiDhhp~e~~~---~~a~~~~Ie~~gScsTLV~~y~l~~~~~~~~~~~---n 174 (377)
T KOG4129|consen 102 GKLKLYLVDHNVLPSKD-LVNEIAVIEGIIDHHPDEDKH---LPACPRIIELSGSCSTLVSRYILEELQELNTRQA---N 174 (377)
T ss_pred CCceEEEecCCCCcccc-ccccccceeeeeccCcccccC---CCccceeEEeecchHHHHHHHHHhhcchhhhHHH---H
Confidence 12 58999988776210 111123345789999987643 11112345556799999999987643221 1100 0
Q ss_pred HHHHHHHHHhhccccccccccchHHHHh
Q 036793 157 ERLSLLFDYIEDGDLWRWRLENSKAFSS 184 (338)
Q Consensus 157 ~~~~~l~gi~~Dtd~~~~~~~~~~~~~~ 184 (338)
-|.-++..|+-||++++-..+++.+-..
T Consensus 175 ~A~LL~g~ILiDt~nm~~ek~s~kd~~~ 202 (377)
T KOG4129|consen 175 LARLLLGPILIDTGNMRKEKTSPKDVEI 202 (377)
T ss_pred HHHHhhcceEEeccccccccCChhHHHH
Confidence 1212347899999999987777755443
No 15
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=93.37 E-value=0.11 Score=53.02 Aligned_cols=82 Identities=12% Similarity=0.172 Sum_probs=54.3
Q ss_pred EEEecCCCchHHHHHHHHHHHHhcCCCCeEEeeCCCCCCCC--CCCCCCCCCCeEEEEeCCCChHHHHHHhh--CCCcEE
Q 036793 30 AVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPIS--PNNLPLHEIDDLYLLDYVGPSGFVQQVSS--KVSKVV 105 (338)
Q Consensus 30 iii~h~~D~DgigSa~~l~~~~~~~~~~v~~~p~~~~~~~~--~~~~~~~~~~~viivD~~~~~~~~~~l~~--~~~~vi 105 (338)
|++...+|.|+++|+-.|..+|+.-.....++|-..|..+. .++. .++...+|++-|+..-... ++.. ....+.
T Consensus 2 Vli~v~~dvDalcA~kiL~~Llk~d~I~~~l~PV~gy~el~~~~~~~-~~~~~~vilIncGa~~dl~-~~l~~~~~~~iy 79 (622)
T PF02724_consen 2 VLILVALDVDALCACKILTSLLKSDNIQYSLVPVSGYSELERAYEEL-DEDIKSVILINCGATVDLE-EFLELDEDVTIY 79 (622)
T ss_pred EEEEEcCChHHHHHHHHHHHHHHhcCCCeeEEEeCCHHHHHHHHHHH-hhhhceEEEEecCchhhHH-HHhCCCCceEEE
Confidence 55666689999999999999999877677788865443221 1112 2345678888888765432 2322 234778
Q ss_pred EEcCCCCC
Q 036793 106 ILDHHKTA 113 (338)
Q Consensus 106 viDHH~~~ 113 (338)
|||.|.+-
T Consensus 80 ViDshRP~ 87 (622)
T PF02724_consen 80 VIDSHRPW 87 (622)
T ss_pred EEeCCCCc
Confidence 88888764
No 16
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=89.89 E-value=0.37 Score=48.63 Aligned_cols=32 Identities=22% Similarity=0.075 Sum_probs=26.3
Q ss_pred CCcEEEecC-CCchHHHHHHHHHHHHhcCCCCe
Q 036793 27 KKPAVLYHY-PCPDGAFAALAAHLYFSSSSVPA 58 (338)
Q Consensus 27 ~~~iii~h~-~D~DgigSa~~l~~~~~~~~~~v 58 (338)
.++++++|+ ||.|+++||++++.+.+..+++.
T Consensus 3 ~~i~v~gh~~~d~d~i~sai~ya~l~~~~~~~~ 35 (546)
T PRK14869 3 KPIYVIGHKNPDTDSICSAIAYAELKNKLGEGN 35 (546)
T ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHHHcCCCc
Confidence 467788887 79999999999999888776543
No 17
>KOG2475 consensus CDC45 (cell division cycle 45)-like protein [Replication, recombination and repair]
Probab=80.83 E-value=3.9 Score=40.26 Aligned_cols=84 Identities=11% Similarity=0.188 Sum_probs=49.2
Q ss_pred CcEEEecCCCchHHHHHHHHHHHHhcCCCCeEEeeCCCCCCCC--CCCCCCCCCCeEEEEeCCCChHHHHHHh-hCCCcE
Q 036793 28 KPAVLYHYPCPDGAFAALAAHLYFSSSSVPALFFPNTVYNPIS--PNNLPLHEIDDLYLLDYVGPSGFVQQVS-SKVSKV 104 (338)
Q Consensus 28 ~~iii~h~~D~DgigSa~~l~~~~~~~~~~v~~~p~~~~~~~~--~~~~~~~~~~~viivD~~~~~~~~~~l~-~~~~~v 104 (338)
..|+++..-|.|++++.-.|..+++.-.....++|-..+..+. .-+. .+....+|.+-|+..-....-+. .....+
T Consensus 24 ~~vlifVs~DiDALCA~kiLt~Llk~D~iqysivPVsG~~elek~~~e~-~e~~~~iiLiNcG~~vDL~~~L~~P~e~~~ 102 (587)
T KOG2475|consen 24 CPVLIFVSLDIDALCATKILTHLLKCDHIQYSIVPVSGWSELEKAFLEL-QEQIKYIILINCGATVDLTRLLQPPSEDVI 102 (587)
T ss_pred CcEEEEEecChhHHHHHHHHHHHHhccccceeEEEecchHHHHHHHHhh-ccCceEEEEecCCcchhHHHHhCCcccceE
Confidence 3466666699999999999999998765566778865333221 0011 12345666677766543221111 111136
Q ss_pred EEEcCCCC
Q 036793 105 VILDHHKT 112 (338)
Q Consensus 105 iviDHH~~ 112 (338)
.|+|-|.+
T Consensus 103 fViDSHRP 110 (587)
T KOG2475|consen 103 FVIDSHRP 110 (587)
T ss_pred EEEeCCCC
Confidence 77777754
No 18
>PF03690 UPF0160: Uncharacterised protein family (UPF0160); InterPro: IPR003226 The function of this domain is not known, but it is found in several uncharacterised proteins and a probable metal dependent protein hydrolase.
Probab=72.37 E-value=16 Score=34.22 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=30.9
Q ss_pred EEEeCCCChHHHHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcc
Q 036793 83 YLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKF 145 (338)
Q Consensus 83 iivD~~~~~~~~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~ 145 (338)
|++|++..- .+..-.+||||..-.. .+. --....-|+|.|||.+|...-
T Consensus 46 iVvDVGg~y---------Dp~~~rfDHHQ~~f~~--tf~---~~~~~~lSSAGLIy~~fG~~i 94 (318)
T PF03690_consen 46 IVVDVGGVY---------DPEKGRFDHHQRGFNE--TFS---RENGIKLSSAGLIYKHFGKEI 94 (318)
T ss_pred EEEecCCcc---------ccccCccccccccCcc--ccc---cCCCceeecccHHHHHHHHHH
Confidence 889998642 1233479999987642 010 011222489999999988654
No 19
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=64.54 E-value=5.8 Score=30.57 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=18.7
Q ss_pred CCCchHHHHHHHHHHHHhcCCC
Q 036793 35 YPCPDGAFAALAAHLYFSSSSV 56 (338)
Q Consensus 35 ~~D~DgigSa~~l~~~~~~~~~ 56 (338)
+||-|+++||+++..+.++.+.
T Consensus 2 ~pd~d~i~sai~~~~~~~~~~~ 23 (113)
T cd04597 2 NPDTDSVASAIAYAHLKRRQGM 23 (113)
T ss_pred CCcHHHHHHHHHHHHHHhhcCC
Confidence 5899999999999988876553
No 20
>COG4286 Uncharacterized conserved protein related to MYG1 family [Function unknown]
Probab=51.44 E-value=8 Score=35.06 Aligned_cols=95 Identities=20% Similarity=0.221 Sum_probs=51.3
Q ss_pred CCcEEEecCC--CchHHHHHHHHHHHHhcCCCCeEEeeCCCCCCCCCCCCCCCCCCeEEEEeCCCChHHHHHHhhCCCcE
Q 036793 27 KKPAVLYHYP--CPDGAFAALAAHLYFSSSSVPALFFPNTVYNPISPNNLPLHEIDDLYLLDYVGPSGFVQQVSSKVSKV 104 (338)
Q Consensus 27 ~~~iii~h~~--D~DgigSa~~l~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~viivD~~~~~~~~~~l~~~~~~v 104 (338)
.+..+++|.. -.|=+.|.+.|.++ +.. ....++-.. .| ..+ . ..=|++|++..-. ...
T Consensus 3 ~p~~l~THsG~FHaDEvlA~~~L~~l-~l~-~dakIVRsR--dp---~~l--~--s~div~DVGg~yd---------~e~ 62 (306)
T COG4286 3 IPMKLVTHSGSFHADEVLASAVLRLL-DLF-PDAKIVRSR--DP---QVL--D--SCDIVYDVGGVYD---------PEK 62 (306)
T ss_pred CCceEEecCCcccHHHHHHHHHHHHh-ccC-Ccceeeecc--Ch---hhh--h--cCCEEEecCcccc---------ccc
Confidence 3455666663 77888877777432 211 112232111 11 111 1 3347889885421 123
Q ss_pred EEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhccc
Q 036793 105 VILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFL 146 (338)
Q Consensus 105 iviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~ 146 (338)
=.+||||..-...+ +--+.+.-|++.|+|.++...++
T Consensus 63 krFDHHQr~f~~tf-----spky~~klSSaGLI~kyfgr~~l 99 (306)
T COG4286 63 KRFDHHQRSFNETF-----SPKYKTKLSSAGLIYKYFGRDGL 99 (306)
T ss_pred ccccccccccCccc-----CccccccccccchHHHHhhhhHH
Confidence 47999998764311 11223334899999999987653
No 21
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=40.29 E-value=42 Score=23.03 Aligned_cols=23 Identities=48% Similarity=0.686 Sum_probs=17.0
Q ss_pred ceeEEEEEEeeeecCCCeEEEEEecC
Q 036793 277 RGIGAVVYRVPELQNDQLVKISLRSV 302 (338)
Q Consensus 277 ~~v~~~v~~~~e~~~~~~~kvSlRS~ 302 (338)
+|+...+|.. + +++.+++||||-
T Consensus 40 eGvYG~c~~~-e--~~~~i~isLrsl 62 (63)
T PF03295_consen 40 EGVYGSCYYK-E--NDQSIRISLRSL 62 (63)
T ss_pred cCceeEEEEe-c--CCcEEEEEeeec
Confidence 4566677776 3 577899999983
No 22
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=38.85 E-value=98 Score=23.97 Aligned_cols=67 Identities=13% Similarity=0.192 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcCCCCeEEeeCCCCCCCCCCCCCCCCCCeEEEEeCCCChH----HHHHHhhCCCcEEEEc
Q 036793 40 GAFAALAAHLYFSSSSVPALFFPNTVYNPISPNNLPLHEIDDLYLLDYVGPSG----FVQQVSSKVSKVVILD 108 (338)
Q Consensus 40 gigSa~~l~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~viivD~~~~~~----~~~~l~~~~~~viviD 108 (338)
....|.-++..+...++.+..++........... ..+.+.+|++..+.... .++.+.+++.+++.|=
T Consensus 24 s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT 94 (139)
T cd05013 24 SGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAAN--LTPGDVVIAISFSGETKETVEAAEIAKERGAKVIAIT 94 (139)
T ss_pred hHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHc--CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEc
Confidence 4455555666677777766665432110000001 13457899998887762 3444555666665553
No 23
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=34.03 E-value=54 Score=26.22 Aligned_cols=52 Identities=8% Similarity=0.027 Sum_probs=28.1
Q ss_pred cchHHHHHHHHhhccCCccccccCCCcEEEecCCCchHHHHHHHHHHHHhcC-CCCeEEee
Q 036793 3 EITHAMVAAIARAIPSSSIMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSS-SVPALFFP 62 (338)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~h~~D~DgigSa~~l~~~~~~~-~~~v~~~p 62 (338)
.++.+..+++.... ++..++++...+|+||.-.--.+.++.... +.++.++.
T Consensus 27 ~l~~~~~~~l~~~~--------~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~ 79 (129)
T PF14595_consen 27 QLSEEQIEKLKSIQ--------KPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIIL 79 (129)
T ss_dssp H--HHHHHHHHT----------S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-
T ss_pred CCCHHHHHHHHhcC--------CCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 34555555544443 233455666667999999999999998876 33455543
No 24
>KOG2948 consensus Predicted metal-binding protein [General function prediction only]
Probab=30.25 E-value=21 Score=32.70 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=30.8
Q ss_pred eEEEEeCCCChHHHHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHh
Q 036793 81 DLYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKN 143 (338)
Q Consensus 81 ~viivD~~~~~~~~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~ 143 (338)
.=|+||++..- .+..-.+||||.+-.. .....+.+.-|+|.|+|.++..
T Consensus 48 ~DIvvDVGg~y---------Dp~~~ryDHHQr~F~E-----Tfs~~~~tKLSSAGLIykhyG~ 96 (327)
T KOG2948|consen 48 CDIVVDVGGVY---------DPEKKRYDHHQRGFFE-----TFSPKYKTKLSSAGLIYKHYGR 96 (327)
T ss_pred cCEEEecCccc---------cccccccchhhhhhhh-----hcCCccceeecccceeHHHhhH
Confidence 45789998542 1234579999987532 2222344444888999987654
No 25
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=29.08 E-value=3.5e+02 Score=23.33 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=36.0
Q ss_pred CCCeEEEEeCCCChHHHHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcc
Q 036793 78 EIDDLYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKF 145 (338)
Q Consensus 78 ~~~~viivD~~~~~~~~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~ 145 (338)
+.+-+++.........++++.+.+.+++.+|++..... .. .+..| ...++.++.+++.+.|
T Consensus 55 ~~dgiii~~~~~~~~~l~~~~~~~ipvV~~~~~~~~~~----~~--~v~~d-~~~~g~~~~~~l~~~g 115 (267)
T cd06283 55 QVDGLIVNPTGNNKELYQRLAKNGKPVVLVDRKIPELG----VD--TVTLD-NYEAAKEAVDHLIEKG 115 (267)
T ss_pred CcCEEEEeCCCCChHHHHHHhcCCCCEEEEcCCCCCCC----CC--EEEec-cHHHHHHHHHHHHHcC
Confidence 45777776544333445666666678999998754321 11 12223 2456667778777765
No 26
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=27.51 E-value=64 Score=27.35 Aligned_cols=29 Identities=21% Similarity=0.309 Sum_probs=22.1
Q ss_pred cchHHHHHHHHhhccCCccccccCCCcEEEecCCCchH
Q 036793 3 EITHAMVAAIARAIPSSSIMNMMKKKPAVLYHYPCPDG 40 (338)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~h~~D~Dg 40 (338)
-++.+.++.|..++ +++-|+++++||+=|
T Consensus 32 ~i~~~~i~~i~~~~---------~~rgVIIfTDpD~~G 60 (174)
T TIGR00334 32 ALKDETINLIKKAQ---------KKQGVIILTDPDFPG 60 (174)
T ss_pred ccCHHHHHHHHHHh---------hcCCEEEEeCCCCch
Confidence 46778888888877 567888888888744
No 27
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=24.27 E-value=59 Score=29.43 Aligned_cols=22 Identities=14% Similarity=0.392 Sum_probs=16.7
Q ss_pred HHHHhhCCCcEEEEcCCCCCCC
Q 036793 94 VQQVSSKVSKVVILDHHKTALE 115 (338)
Q Consensus 94 ~~~l~~~~~~viviDHH~~~~~ 115 (338)
++.+.......++||||...+.
T Consensus 231 l~~ii~~~~~~lViDHHllRD~ 252 (304)
T COG2248 231 LERIIEETNATLVIDHHLLRDK 252 (304)
T ss_pred HHHHHHhCcceEEEeehhhcCC
Confidence 4555666668899999998874
No 28
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=20.57 E-value=52 Score=27.67 Aligned_cols=39 Identities=33% Similarity=0.323 Sum_probs=23.9
Q ss_pred EEEecCCC--CC---HHHHHhHc-------CCCccccccccccchhhhccc
Q 036793 297 ISLRSVDS--ED---TTAIAQEF-------GGGGHRNASSFMLSSAEFERW 335 (338)
Q Consensus 297 vSlRS~~~--id---v~~IA~~f-------GGGGH~~AAG~~~~~~~~~~~ 335 (338)
+.+.|.++ +. ..++|+++ |+|||.+++...-+-.+..++
T Consensus 118 ~viaS~nDp~vp~~~a~~~A~~l~a~~~~~~~~GHf~~~~G~~~~p~~~~~ 168 (171)
T PF06821_consen 118 IVIASDNDPYVPFERAQRLAQRLGAELIILGGGGHFNAASGFGPWPEGLDL 168 (171)
T ss_dssp EEEEETTBSSS-HHHHHHHHHHHT-EEEEETS-TTSSGGGTHSS-HHHHHH
T ss_pred EEEEcCCCCccCHHHHHHHHHHcCCCeEECCCCCCcccccCCCchHHHHHH
Confidence 55666542 22 44577776 589999999887666555444
Done!