Query 036793
Match_columns 338
No_of_seqs 151 out of 1784
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 08:56:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036793.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036793hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dma_A Exopolyphosphatase-rela 100.0 8.8E-41 3E-45 312.9 19.5 293 5-334 7-325 (343)
2 3dev_A SH1221; alpha-beta prot 100.0 1.1E-40 3.8E-45 309.2 20.0 269 27-328 16-296 (320)
3 2zxr_A Single-stranded DNA spe 99.9 2E-24 6.8E-29 215.6 22.5 295 7-336 60-411 (666)
4 2haw_A Manganese-dependent ino 99.9 2.8E-24 9.6E-29 198.9 16.8 263 29-329 4-291 (309)
5 1wpn_A Manganese-dependent ino 99.9 2.1E-24 7.3E-29 185.7 14.6 166 29-207 4-186 (188)
6 2eb0_A Manganese-dependent ino 99.9 6.9E-23 2.4E-27 189.4 16.0 260 29-329 2-289 (307)
7 1k20_A Manganese-dependent ino 99.9 6.3E-23 2.2E-27 189.8 13.1 167 29-207 3-187 (310)
8 2qb7_A Exopolyphosphatase; A/B 99.8 2.2E-19 7.7E-24 171.4 3.8 154 27-191 28-224 (397)
9 3gv0_A Transcriptional regulat 27.2 1.1E+02 0.0039 25.8 6.2 63 77-146 65-127 (288)
10 3kjx_A Transcriptional regulat 25.1 2.8E+02 0.0094 24.1 8.6 93 46-146 89-185 (344)
11 3g98_A Alanyl-tRNA synthetase; 24.2 66 0.0023 23.7 3.5 35 292-326 47-91 (111)
12 2cly_C ATP synthase coupling f 24.0 31 0.0011 23.9 1.4 12 306-317 43-54 (77)
13 3egc_A Putative ribose operon 20.7 1.7E+02 0.0057 24.6 6.0 93 46-146 29-125 (291)
No 1
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Probab=100.00 E-value=8.8e-41 Score=312.89 Aligned_cols=293 Identities=16% Similarity=0.179 Sum_probs=192.7
Q ss_pred hHHHHHHHHhhccCCccccccCCCcEEEecC-CCchHHHHHHHHHHHHhcCCCCeEE-eeCCC---CCCCC-CCCCC---
Q 036793 5 THAMVAAIARAIPSSSIMNMMKKKPAVLYHY-PCPDGAFAALAAHLYFSSSSVPALF-FPNTV---YNPIS-PNNLP--- 75 (338)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~iii~h~-~D~DgigSa~~l~~~~~~~~~~v~~-~p~~~---~~~~~-~~~~~--- 75 (338)
++..++++.+.+. ...+++|+.|. ||+||+||+++++.++++.|+++.+ .|... +.++. .+++.
T Consensus 7 ~~~~~~~l~~~i~-------~~~~i~I~~H~~pD~DaiGS~~~l~~~l~~~g~~~~~~~~~~~~~~~~fl~~~~~i~~~~ 79 (343)
T 3dma_A 7 AQAHIDHFTKWFE-------RADKIVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPNAFPDFLKWMPGSKDILLYD 79 (343)
T ss_dssp CHHHHHHHHHHHH-------HCSEEEEEECSSCCHHHHHHHHHHHHHHHHTSCEEEEEESSCCCGGGTTSTTGGGCEETT
T ss_pred CHHHHHHHHHHHh-------cCCeEEEEecCCCChHHHHHHHHHHHHHHHcCCCEEEECCCCCchHhhhccCcchhcccc
Confidence 4455566665552 23455566665 8999999999999999999987765 34321 11111 11111
Q ss_pred C---------CCCCeEEEEeCCCChHH--HH-HHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHh
Q 036793 76 L---------HEIDDLYLLDYVGPSGF--VQ-QVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKN 143 (338)
Q Consensus 76 ~---------~~~~~viivD~~~~~~~--~~-~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~ 143 (338)
. .+.+++|+||++.+++. +. .+......+++||||+.++. ++..+++.+...|||+|+|+++++
T Consensus 80 ~~~~~~~~~~~~~~lvi~VD~~~~~r~~~~~~~l~~~~~~~ivIDHH~~~~~----~~~~~~i~~~~~ST~eiv~~l~~~ 155 (343)
T 3dma_A 80 RYQEFADKLIMEADVICCLDFNALKRIDEMSDIVAASPGRKIMIDHHLYPED----FCRITISHPEISSTSELVFRLICR 155 (343)
T ss_dssp TCHHHHHHHHHHCSEEEEESCSSGGGGTTCHHHHHHCCSEEEEEECCSSCCS----CSSEEEECTTSSCHHHHHHHHHHH
T ss_pred cChHHHhhcccCCCEEEEEeCCChHHhchhHHHHHhCCCCEEEEcCCCCCCC----CCceEEEecCcCcHHHHHHHHHHH
Confidence 0 13579999999988743 22 34445568899999999874 567777766667999999999998
Q ss_pred cc--cCCccccchhhHHHHHHHHHhhccccccccccchHHHHhhhhcccccccccCCHH-HHHHHHcc-CHHHHHHhhhH
Q 036793 144 KF--LDNGLQLHREFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNIEFSFQLNPC-LFEQLLSL-DLESVISQGIV 219 (338)
Q Consensus 144 ~~--~~~~~~~a~~~~~~~~l~gi~~Dtd~~~~~~~~~~~~~~a~~l~~~g~~~~~~~~-~~~~l~~~-~~~~~~~~~~~ 219 (338)
.+ ++++ +..|+.+|+||++||+.|+|++|++++|++|++|++.| +|+. +.+.++.. +.+
T Consensus 156 ~~~~~~i~-----~~~At~L~~GI~tDTg~F~~~~Tt~~t~~aaa~L~~~G----ad~~~i~~~l~~~~s~~-------- 218 (343)
T 3dma_A 156 MGYFSDIS-----KEGAECIYTGMMTDTGGFTYNSNNREIYFIISELLSKG----IDKDDIYRKVYNTYSES-------- 218 (343)
T ss_dssp TTCGGGCC-----HHHHHHHHHHHHHHTTTTTSSCCCHHHHHHHHHHHTTT----CCHHHHHHHHHSCCCHH--------
T ss_pred cCCCCCCC-----HHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHcC----CCHHHHHHHHhccCCHH--------
Confidence 87 6664 56778899999999999999999999999999999999 5666 44556665 433
Q ss_pred HHHHHHHHHHHHHhhhhhheeccccccceEEEeccchHHHHHHHHHHHhhhcccCCcceeEEEEEEeeeecCCCeEEEEE
Q 036793 220 SLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDADAVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISL 299 (338)
Q Consensus 220 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~~~~~~~~i~~v~~~v~~~~e~~~~~~~kvSl 299 (338)
+.++...++++.... .++.+.+. .+..+..+.+....+..-...+..+.++++.+++++. |...++++++|+
T Consensus 219 ----~~~l~~~~l~~~~~~--~~~~~a~~-~~~~~~~~~~~~~~~d~~~~v~~ll~i~gv~~~~~~~-e~~~~~~i~vs~ 290 (343)
T 3dma_A 219 ----RLRLMGYVLSNMKVY--KDYNSALI-SLTKEEQGKFDYIKGDSEGFVNIPLSIKNVCFSCFLR-EDTEKKMIKISL 290 (343)
T ss_dssp ----HHHHHHHHHHTCEEE--TTTTEEEE-EECHHHHHHTTCCTTTTTTGGGGGGGSTTCCEEEEEE-ECCCC--EEEEE
T ss_pred ----HHHHHHHHHhceEEe--cCCCEEEE-EEcHHHHHHcCCCHHHHHHHHHHhcccCCEEEEEEEE-EecCCCEEEEEE
Confidence 233444445443321 11122221 1121111111000000000112234678899877776 431237899999
Q ss_pred ecCCCCCHHHHHhH-cCCCccccccccccchhhhcc
Q 036793 300 RSVDSEDTTAIAQE-FGGGGHRNASSFMLSSAEFER 334 (338)
Q Consensus 300 RS~~~idv~~IA~~-fGGGGH~~AAG~~~~~~~~~~ 334 (338)
||++++||++||++ ||||||++|||++++ ..+++
T Consensus 291 RS~~~~~v~~i~~~~~ggGGH~~aag~~~~-~~~~~ 325 (343)
T 3dma_A 291 RSVGKFPCNRLAAEFFNGGGHLNASGGEFY-GTMEE 325 (343)
T ss_dssp EESSSCCHHHHHHHHTSCEECSSEEEEEEC-SCHHH
T ss_pred ecCCCCCHHHHHHhCCCCCCcHHhCeeEEc-CCHHH
Confidence 99988999999999 999999999999997 34433
No 2
>3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG; 3.10A {Staphylococcus haemolyticus}
Probab=100.00 E-value=1.1e-40 Score=309.20 Aligned_cols=269 Identities=14% Similarity=0.162 Sum_probs=182.6
Q ss_pred CCcEEEecC-CCchHHHHHHHHHHHHhcC--CCCeEEeeCC---CCCCCC-CCCCCCC--CCCeEEEEeCCCChHHHHHH
Q 036793 27 KKPAVLYHY-PCPDGAFAALAAHLYFSSS--SVPALFFPNT---VYNPIS-PNNLPLH--EIDDLYLLDYVGPSGFVQQV 97 (338)
Q Consensus 27 ~~~iii~h~-~D~DgigSa~~l~~~~~~~--~~~v~~~p~~---~~~~~~-~~~~~~~--~~~~viivD~~~~~~~~~~l 97 (338)
.+++|++|. ||+||+||+++++++++++ ++++.+ +.. .+.++. .+++... +.+++|+||++.+++.....
T Consensus 16 ~~i~I~~H~~PD~DaigSalal~~~l~~~~~~k~v~~-~~~~~~~~~fl~~~~~i~~~~~~~~lvi~VD~~~~~r~~~~~ 94 (320)
T 3dev_A 16 ETIIIHRHVRPDPDAYGSQLGLKLYLERKFPEKNIYA-TGEAEPSLSFIGDLDEIDDSVYSDALVIVCDTANAPRIDDQR 94 (320)
T ss_dssp SEEEEECBSSCCHHHHHHHHHHHHHHHHHCTTSEEEE-CCCCCGGGTTTCCCCCCCSSTTTTCEEEEESCSSGGGBSSGG
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHhCCCCEEEE-eCCCcchhhhccCcccccccccCCCEEEEECCCCchhcchhh
Confidence 456666666 8999999999999999987 444443 221 112211 2333222 34789999999887432233
Q ss_pred hhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhc--ccCCccccchhhHHHHHHHHHhhcccccccc
Q 036793 98 SSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNK--FLDNGLQLHREFERLSLLFDYIEDGDLWRWR 175 (338)
Q Consensus 98 ~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~--~~~~~~~~a~~~~~~~~l~gi~~Dtd~~~~~ 175 (338)
......+++||||+.++. ++..+++.+...|||+|+|++++.. +++++ +..|+.+|+||++||+.|+|+
T Consensus 95 ~~~~~~vivIDHH~~~~~----~~~~~~i~p~~~St~eiv~~~~~~~~~~~~i~-----~~~A~~L~~GI~tDTg~F~~~ 165 (320)
T 3dev_A 95 YLNGQSLIKIDHHPATDQ----YGDVNFVNTEASSTSEIIFDFISHFNDLSIID-----EHVARVLYLGIVGDTGRFLFS 165 (320)
T ss_dssp GGSSSCEEEEECSCSSCC----CSSEEEECTTSSCHHHHHHHHHHTTTCTTTCC-----HHHHHHHHHHHHHHTTTTTST
T ss_pred hhccCCEEEEcCCCCCCC----CCCeEEEecCCCcHHHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHHccCcCCC
Confidence 445668899999999874 4566777666678999999999864 56664 567788999999999999999
Q ss_pred ccchHHHHhhhhcccccccccCCHH-HHHHHHccCHHHHHHhhhHHHHHHHHHHHHHHhhhhhheeccccccceEEEecc
Q 036793 176 LENSKAFSSGLKDLNIEFSFQLNPC-LFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDAD 254 (338)
Q Consensus 176 ~~~~~~~~~a~~l~~~g~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~ 254 (338)
+|++++|++|++|++.| +|+. +.+.+.+.+.+ +.++...++++..... ++.+.+. .+..+
T Consensus 166 ~tt~~t~~aaa~L~~~G----ad~~~i~~~l~~~s~~------------~~~l~~~~l~~~~~~~--~g~~a~~-~~~~~ 226 (320)
T 3dev_A 166 NTSPHTMEVASQLLAYP----FNHNAELNKMSEKDPK------------LMPFQGYVLQNFELSD--SHEYCQI-KITND 226 (320)
T ss_dssp TCCHHHHHHHHHHHHSS----SCHHHHHHHHHCBCGG------------GHHHHHHHHHSCCBCT--TSSEEEE-EECHH
T ss_pred CCCHHHHHHHHHHHHcC----CCHHHHHHHHHhCCHH------------HHHHHHHHHhceEEec--CCcEEEE-EEcHH
Confidence 99999999999999999 5666 55667554433 2234444444433221 2122221 22222
Q ss_pred chHHHHHHHHHHHhhhcccCCcceeEEEEEEeeeecCCCeEEEEEecCCCCCHHHHHhHcCCCccccccccccc
Q 036793 255 AVAELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEFGGGGHRNASSFMLS 328 (338)
Q Consensus 255 ~~~~~~s~~~~~l~~~~~~~~i~~v~~~v~~~~e~~~~~~~kvSlRS~~~idv~~IA~~fGGGGH~~AAG~~~~ 328 (338)
..+.+....+..-...+..+.++++.+++++. +. ++.+++|+||++ +||++||++||||||++|||++++
T Consensus 227 ~~~~~~~~~~~~~~lv~~l~~i~gv~~~~~~~-~~--~~~~~~s~RS~~-~~v~~i~~~~gGGGH~~AAg~~~~ 296 (320)
T 3dev_A 227 VLKQFDIQPNEASQFVNTVADISGLKIWMFGV-DE--GDQIRCRIRSKG-ITINDVANQFGGGGHPNASGVSVY 296 (320)
T ss_dssp HHHHTTCCHHHHTTCGGGSTTBTTCCEEEEEE-EC--SSSEEEEEEESS-SCCHHHHHHTTCEEETTEEEEEES
T ss_pred HHHHcCCCHHHHHHHHHHHhCcCCcEEEEEEE-EE--CCEEEEEEecCC-cCHHHHHHHcCCCCcHHhceeecC
Confidence 11111100111111123456788999877776 43 448999999998 999999999999999999999997
No 3
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=99.93 E-value=2e-24 Score=215.60 Aligned_cols=295 Identities=13% Similarity=0.048 Sum_probs=159.5
Q ss_pred HHHHHHHhhccCCccccccCCCcEEEecCCCchHHHHHHHHHHHHhcCCCCeEE-eeCCC---CCCC--CCCCCCCCCCC
Q 036793 7 AMVAAIARAIPSSSIMNMMKKKPAVLYHYPCPDGAFAALAAHLYFSSSSVPALF-FPNTV---YNPI--SPNNLPLHEID 80 (338)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~iii~h~~D~DgigSa~~l~~~~~~~~~~v~~-~p~~~---~~~~--~~~~~~~~~~~ 80 (338)
.++++|.+++ .+...|+|++|.|+||++|+++++.+++++|+++.+ +|... |... .+++.. .+.+
T Consensus 60 ~Av~~i~~aI--------~~~ekI~I~GH~D~DGi~Saa~L~~~L~~lG~~v~~~ip~r~~egygl~~~~I~~~~-~~~~ 130 (666)
T 2zxr_A 60 EAAALLEEAL--------RQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHL-EASD 130 (666)
T ss_dssp HHHHHHHHHH--------HTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEECCC---------------------CC
T ss_pred HHHHHHHHHH--------HcCCeEEEEeccCCchHHHHHHHHHHHHHcCCcEEEecCCCCCccccCCHHHHHhhc-cCCC
Confidence 4566777776 346677777778999999999999999999987655 45331 1111 122322 3568
Q ss_pred eEEEEeCCCChH-HHHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCC-------cHHH----HHHHHHHhcccCC
Q 036793 81 DLYLLDYVGPSG-FVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMER-------SGAT----IAYDYFKNKFLDN 148 (338)
Q Consensus 81 ~viivD~~~~~~-~~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~-------s~a~----lv~~~l~~~~~~~ 148 (338)
++|+||++..+. .+..+.+.+..+++||||..++.. +...++.+... |||+ |++.+++..+.++
T Consensus 131 LIItVD~G~~s~~~i~~a~~~g~~VIViDHH~~~~~~----p~a~iVnP~~~s~~~k~L~gaGVaf~Lv~aL~~~l~~~~ 206 (666)
T 2zxr_A 131 LFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTP----PPGLVVHPALTPDLKEKPTGAGVAFLLLWALHERLGLPP 206 (666)
T ss_dssp EEEESCCC--------------CEEEEECCCC------------CEECGGGSTTCCCCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEEcCCchhhhhHHHHHhCCCCEEEECCcCCCCcC----CCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHcCCCC
Confidence 999999998872 244444556789999999998753 22233433222 5554 4555555555544
Q ss_pred ccccchhhHHHHHHHHHhhccccccccccc-----hHHHH------hhhhccccccccc------------------CCH
Q 036793 149 GLQLHREFERLSLLFDYIEDGDLWRWRLEN-----SKAFS------SGLKDLNIEFSFQ------------------LNP 199 (338)
Q Consensus 149 ~~~~a~~~~~~~~l~gi~~Dtd~~~~~~~~-----~~~~~------~a~~l~~~g~~~~------------------~~~ 199 (338)
. ...+..+++|+++||..|++.|.. -+.++ ..+.+...|.+.. .++
T Consensus 207 ~-----~~~adlvalGivaDt~~L~~~NR~lvk~GL~~l~~~~~~Gl~aLl~~~g~~~~~~~igF~i~PriNA~GRl~~a 281 (666)
T 2zxr_A 207 P-----LEYADLAAVGTIADVAPLWGWNRALVKEGLARIPASSWVGLRLLAEAVGYTGKAVEVAFRIAPRINAASRLGEA 281 (666)
T ss_dssp C-----GGGHHHHHHHHHHTTCCCSHHHHHHHHHHHHHGGGCSSHHHHHHHHHTTCCSCHHHHHHTHHHHHHHHHHTTCH
T ss_pred C-----HHHHHHHHHHHHHhccccchhhHHHHHHHHHHhhcCCCHHHHHHHHHcCCCCCHHHHHHHhhhhhhhccccCcH
Confidence 3 234456679999999998766511 11111 1111222221110 122
Q ss_pred H-HHHHHHccCHHHHHH---hhhHHHHHHHHHHHHHHhhhhhheeccccccceEEEeccc-hHHHHHHHHHHHhhhcccC
Q 036793 200 C-LFEQLLSLDLESVIS---QGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVDADA-VAELRSELGHQLATKSHDL 274 (338)
Q Consensus 200 ~-~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~-~~~~~s~~~~~l~~~~~~~ 274 (338)
. .++-|+..+.++..+ .-..++..++++...+++.+.. .+..... +..+..++ -....+.++.++.+....
T Consensus 282 ~~~v~lLl~~d~~~a~~lA~~l~~lN~~Rk~i~~~i~~~A~~-~i~~~~~--~iv~~~~~wh~GViGIVAsrl~e~~~r- 357 (666)
T 2zxr_A 282 EKALRLLLTDDAAEAQALVGELHRLNARRQTLEEAMLRKLLP-QADPEAK--AIVLLDPEGHPGVMGIVASRILEATLR- 357 (666)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSCTTCS--SEEEECTTCCHHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCe--EEEEEcCCcCcccHHHHHHHHHHHhCC-
Confidence 2 233445555544222 2333454555555555544332 1222112 22332222 234566677776654432
Q ss_pred CcceeEEEEEEeeeecCCCeEEEEEecCCCCCHHHHHhHc-----CCCccccccccccchhhhcccc
Q 036793 275 NLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEF-----GGGGHRNASSFMLSSAEFERWK 336 (338)
Q Consensus 275 ~i~~v~~~v~~~~e~~~~~~~kvSlRS~~~idv~~IA~~f-----GGGGH~~AAG~~~~~~~~~~~~ 336 (338)
-++++. .+ |+|.||.+++|+.++.+++ |||||+.|||++++...+++|+
T Consensus 358 -----P~iv~a------~~--kgSaRSi~g~nl~~~L~~~~~ll~~gGGH~~AAG~si~~~~l~~f~ 411 (666)
T 2zxr_A 358 -----PVFLVA------QG--KGTVRSLAPISAVEALRSAEDLLLRYGGHKEAAGFAMDEALFPAFK 411 (666)
T ss_dssp -----CEEEEE------TT--EEEEECCTTCCHHHHHHHTGGGCSEEEECSSEEEEECCGGGHHHHH
T ss_pred -----CEEEEE------CC--EEEEECCCCccHHHHHHHHHhhCcccCCChHHcccccCcccHHHHH
Confidence 122332 22 8999999889999999887 8999999999999988888775
No 4
>2haw_A Manganese-dependent inorganic pyrophosphatase; substrate complex, hydrolase; HET: 1PE PG4; 1.75A {Bacillus subtilis} SCOP: c.107.1.1 PDB: 1k23_A* 1wpm_A* 2iw4_A*
Probab=99.92 E-value=2.8e-24 Score=198.86 Aligned_cols=263 Identities=15% Similarity=0.106 Sum_probs=160.0
Q ss_pred cEEEecC-CCchHHHHHHHHHHHHhcCCCCeEEe-eCCCC-------CCCCC--CCC-C--CCCCCeEEEEeCCCChHHH
Q 036793 29 PAVLYHY-PCPDGAFAALAAHLYFSSSSVPALFF-PNTVY-------NPISP--NNL-P--LHEIDDLYLLDYVGPSGFV 94 (338)
Q Consensus 29 ~iii~h~-~D~DgigSa~~l~~~~~~~~~~v~~~-p~~~~-------~~~~~--~~~-~--~~~~~~viivD~~~~~~~~ 94 (338)
++|++|. ||+||+|||+++++++++.|+++.++ +.... ....+ .++ . ..+.+.+|+||++.+++..
T Consensus 4 i~I~gH~~pD~DaigSalal~~~l~~~g~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~vilVD~~~~~r~~ 83 (309)
T 2haw_A 4 ILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPVRLGQVNGETQYALDYFKQESPRLVETAANEVNGVILVDHNERQQSI 83 (309)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEESSCCCHHHHHHHHHTTCCCCEECSCSTTTCSEEEEESCCCGGGSC
T ss_pred EEEEcCCCCChHHHHHHHHHHHHHHHcCCCeEEEECCCCCHHHHHHHHHcCCCcHHhhhhccCCCCEEEEEeCCCcccch
Confidence 5666676 89999999999999999988876654 32200 00001 111 1 1234589999999887432
Q ss_pred HHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcccCCccccchhhHHHHHHHHHhhccccccc
Q 036793 95 QQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWRW 174 (338)
Q Consensus 95 ~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~~~~~a~~~~~~~~l~gi~~Dtd~~~~ 174 (338)
. .......+++||||+.+... ..+...++++...|||+|+++++++.+++++ +..|+.+|+||++||++|+|
T Consensus 84 ~-~~~~~~~~~iIDHH~~~~~~--~~~~~~~~~~~~gSt~~lv~~~~~~~~~~i~-----~~~A~~L~~gI~~DT~~F~~ 155 (309)
T 2haw_A 84 K-DIEEVQVLEVIDHHRIANFE--TAEPLYYRAEPVGCTATILNKMYKENNVKIE-----KEIAGLMLSAIISDSLLFKS 155 (309)
T ss_dssp T-TGGGSEEEEEEECSCCCSCC--CSSCCEEEECCSSCHHHHHHHHHHHTTCCCC-----HHHHHHHHHHHHHHHTTTTS
T ss_pred h-hhhhcCEEEEECCCcCCCcC--CCCCcEEEEccccHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHHhcCCCC
Confidence 2 22234467899999987632 1344556666667999999999999888875 56667889999999999999
Q ss_pred cccchHHHHhhhhcc-cccccccCCHH-HHHHHHccCHHHHHHhhhHHHHHHHHHHHHHHhhhhhheeccccccceEEEe
Q 036793 175 RLENSKAFSSGLKDL-NIEFSFQLNPC-LFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGHCLAVD 252 (338)
Q Consensus 175 ~~~~~~~~~~a~~l~-~~g~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~ 252 (338)
+++++++|++|++|+ ..|+ |+. +.++++..... + .+.++...+++......++++++++... .
T Consensus 156 ~~tt~~d~~aa~~L~~~~G~----d~~~i~~~l~~~~~~--------~--~~~~~~~~l~~d~k~~~~~~~~v~i~~v-~ 220 (309)
T 2haw_A 156 PTCTDQDVAAAKELAEIAGV----DAEEYGLNMLKAGAD--------L--SKKTVEELISLDAKEFTLGSKKVEIAQV-N 220 (309)
T ss_dssp TTCCHHHHHHHHHHHHHHTS----CHHHHHHHHHHHHTC--------C--TTCCHHHHTTTTEEEEEETTEEEEEEEE-E
T ss_pred CCCCHHHHHHHHHHHHHcCC----CHHHHHHHHHHhccC--------c--ccCCHHHHHHHHHHHHhcCCcEEEEEEE-E
Confidence 999999999999999 4884 555 44566542110 0 0112222233333223334445553333 3
Q ss_pred ccch-------HHHHHHHHHHHhhhcccCCcceeEEEEEEeeeec--CCCeEEEEEecCCCCCHHHHHhHcCCCcccccc
Q 036793 253 ADAV-------AELRSELGHQLATKSHDLNLRGIGAVVYRVPELQ--NDQLVKISLRSVDSEDTTAIAQEFGGGGHRNAS 323 (338)
Q Consensus 253 ~~~~-------~~~~s~~~~~l~~~~~~~~i~~v~~~v~~~~e~~--~~~~~kvSlRS~~~idv~~IA~~fGGGGH~~AA 323 (338)
.+.. +.+...+...+ .++++.+++++. ... .+..+.++.|+. +.+.+.||+ |..+.
T Consensus 221 ~~~~~~~~~~~~~~~~~v~~~~-------~~~gvd~~~l~~-~~i~~~~~~l~v~g~~~-----~~~~~af~~--~~~~~ 285 (309)
T 2haw_A 221 TVDIEDVKKRQAELEAVISKVV-------AEKNLDLFLLVI-TDILENDSLALAIGNEA-----AKVEKAFNV--TLENN 285 (309)
T ss_dssp ESCHHHHHTTHHHHHHHHHHHH-------HHTTCSEEEEEE-EETTTTEEEEEEESTTT-----HHHHHHHTC--CCBTT
T ss_pred ecCHHHHHHHHHHHHHHHHHHH-------HhCCCCEEEEEE-EEecCCCeEEEEEeCCh-----hHHHHHhCC--CCCCC
Confidence 2221 22333332222 245666666665 211 233344444432 467888976 77776
Q ss_pred ccccch
Q 036793 324 SFMLSS 329 (338)
Q Consensus 324 G~~~~~ 329 (338)
.+.+++
T Consensus 286 ~~~l~~ 291 (309)
T 2haw_A 286 TALLKG 291 (309)
T ss_dssp EEEEET
T ss_pred eEECCC
Confidence 666553
No 5
>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1
Probab=99.92 E-value=2.1e-24 Score=185.66 Aligned_cols=166 Identities=15% Similarity=0.083 Sum_probs=120.3
Q ss_pred cEEEecC-CCchHHHHHHHHHHHHhcCCCCeEE-eeCCCC-------CCCCC--C----CCCCCCCCeEEEEeCCCChHH
Q 036793 29 PAVLYHY-PCPDGAFAALAAHLYFSSSSVPALF-FPNTVY-------NPISP--N----NLPLHEIDDLYLLDYVGPSGF 93 (338)
Q Consensus 29 ~iii~h~-~D~DgigSa~~l~~~~~~~~~~v~~-~p~~~~-------~~~~~--~----~~~~~~~~~viivD~~~~~~~ 93 (338)
++|+.|. ||+||+||++++++++++.|+++.+ +|.... ....+ . ++. .+.+.+|+||++..++.
T Consensus 4 i~I~gH~~pD~DaigSa~al~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~vi~VD~~~~~r~ 82 (188)
T 1wpn_A 4 ILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPVRLGQVNGETQYALDYFKQESPRLVETAA-NEVNGVILVDHNERQQS 82 (188)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEESSCCCHHHHHHHHHTTCCCCEECSCST-TTCSEEEEESCCCGGGS
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCCchhhhhhhc-cCCCeEEEEeCCCcccc
Confidence 5566665 8999999999999999999887665 443210 00011 1 111 23468999999987742
Q ss_pred HHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcccCCccccchhhHHHHHHHHHhhcccccc
Q 036793 94 VQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLWR 173 (338)
Q Consensus 94 ~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~~~~~a~~~~~~~~l~gi~~Dtd~~~ 173 (338)
...+ +....+++||||+.+... ..+...++++...|||+|+++++++.+++++ +..++.+|+||++||+.|+
T Consensus 83 ~~~~-~~~~~vivIDHH~~~~~~--~~~~~~~~~~~~~St~~lv~~~~~~~~~~i~-----~~~A~~l~~gI~~DTg~f~ 154 (188)
T 1wpn_A 83 IKDI-EEVQVLEVIDHHRIANFE--TAEPLYYRAEPVGCTATILNKMYKENNVKIE-----KEIAGLMLSAIISDSLLFK 154 (188)
T ss_dssp CTTG-GGSEEEEEEECSCCCSCC--CSSCCEEEECSSSCHHHHHHHHHHHTTCCCC-----HHHHHHHHHHHHHHHTTTT
T ss_pred hhhh-ccCCeEEEECCCCCCCCC--CCCCeEEEeccccHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHHHhccC
Confidence 2222 334478899999987632 1345566666667999999999999888775 5667788999999999999
Q ss_pred ccccchHHHHhhhhcc-cccccccCCHH-HHHHHHc
Q 036793 174 WRLENSKAFSSGLKDL-NIEFSFQLNPC-LFEQLLS 207 (338)
Q Consensus 174 ~~~~~~~~~~~a~~l~-~~g~~~~~~~~-~~~~l~~ 207 (338)
|+++++++|++|++|+ +.|+ |+. +++++++
T Consensus 155 ~~~tt~~~~~~aa~L~~~~g~----d~~~i~~~l~~ 186 (188)
T 1wpn_A 155 SPTCTDQDVAAAKELAEIAGV----DAEEYGLNMLK 186 (188)
T ss_dssp STTCCHHHHHHHHHHHHHHTS----CHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----CHHHHHHHHHh
Confidence 9999999999999999 5884 554 5566553
No 6
>2eb0_A Manganese-dependent inorganic pyrophosphatase; DHH domain, DHHA2 domain, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=6.9e-23 Score=189.36 Aligned_cols=260 Identities=15% Similarity=0.068 Sum_probs=150.1
Q ss_pred cEEEecC-CCchHHHHHHHHHHHHhcCCCCeEEeeCCCC-------C--CCCCCCC-CCCCCCeEEEEeCCCChHHHHHH
Q 036793 29 PAVLYHY-PCPDGAFAALAAHLYFSSSSVPALFFPNTVY-------N--PISPNNL-PLHEIDDLYLLDYVGPSGFVQQV 97 (338)
Q Consensus 29 ~iii~h~-~D~DgigSa~~l~~~~~~~~~~v~~~p~~~~-------~--~~~~~~~-~~~~~~~viivD~~~~~~~~~~l 97 (338)
++|++|. ||+|++|||+++++++ ++ ..+.+.... . .....++ ...+.+.+++||++..++....
T Consensus 2 i~I~gH~~pD~DaigSalal~~~l---~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~vilVD~~~~~r~~~~- 76 (307)
T 2eb0_A 2 RYVVGHKNPDTDSIASAIVLAYFL---DC-YPARLGDINPETEFVLRKFGVMEPELIESAKGKEIILVDHSEKSQSFDD- 76 (307)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHHH---TS-EEEESSCCCHHHHHHHHHHTCCCCEECCCCTTCEEEEESCCCGGGSCTT-
T ss_pred EEEEeCCCCChHHHHHHHHHHHHh---CC-eEEEcCCCCHHHHHHHHHcCCCchhhhhhccCCeEEEEeCCCcccchhh-
Confidence 4566676 8999999999999998 22 222332210 0 0001111 1113568999999987743222
Q ss_pred hhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcc--------cCCccccchhhHHHHHHHHHhhcc
Q 036793 98 SSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKF--------LDNGLQLHREFERLSLLFDYIEDG 169 (338)
Q Consensus 98 ~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~--------~~~~~~~a~~~~~~~~l~gi~~Dt 169 (338)
......+++||||+.+ .. ....+.++++...|||+|+++++++.+ +.++ +..|+.+|+||++||
T Consensus 77 ~~~~~~~~iIDHH~~~-~~--~~~~~~~~~~~~gSt~tlv~~~~~~~~~~~~~~~~~~i~-----~~~A~~L~~gI~~DT 148 (307)
T 2eb0_A 77 LEEGKLIAIIDHHKVG-LT--TTEPILYYAKPVGSTATVIAELYFKDAIDLIGGKKKELK-----PDLAGLLLSAIISDT 148 (307)
T ss_dssp GGGSEEEEEEESSCCC-CC--CSSCCEEEECSSSCHHHHHHHHHHTTCGGGGTCCCCCCC-----HHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEcCCCCc-cC--CCCCcEEEEeecchHHHHHHHHHHhcCccccccccccCC-----HHHHHHHHHHHHHHh
Confidence 2234467899999997 21 123445566666799999999999887 7764 566678899999999
Q ss_pred ccccccccchHHHHhhhhccc-ccccccCCHH-HHHHHHccCHHHHHHhhhHHHHHHHHHHHHHHhhhhhheeccccccc
Q 036793 170 DLWRWRLENSKAFSSGLKDLN-IEFSFQLNPC-LFEQLLSLDLESVISQGIVSLSHKQRLIEETLAHSYEIVLGGEAFGH 247 (338)
Q Consensus 170 d~~~~~~~~~~~~~~a~~l~~-~g~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 247 (338)
++|+|+++++++|+++++|++ .|+ .++. ++++++..... ..+.++...+++......++++++++
T Consensus 149 ~~f~~~~tt~~d~~aa~~L~~~~g~---~d~~~i~~~l~~~~~~----------~~~~~~~~~l~~d~k~~~~~~~~v~i 215 (307)
T 2eb0_A 149 VLFKSPTTTDLDKEMAKKLAEIAGI---SNIEEFGMEILKAKSV----------VGKLKPEEIINMDFKNFDFNGKKVGI 215 (307)
T ss_dssp TTTTSTTCCHHHHHHHHHHHHHHTC---SCHHHHHHHHHHHHHG----------GGGSCHHHHHTTSEEEEEETTEEEEE
T ss_pred cCCCCCCCCHHHHHHHHHHHhhCCC---ccHHHHHHHHHHhhcC----------cccCCHHHHHHHhhhheEECCEEEEE
Confidence 999999999999999999994 674 1444 55566542210 01112223333333333335545554
Q ss_pred eEEEeccch-------HHHHHHHHHHHhhhcccCCcceeEEEEEEeeeecCCCeEEEEEecCCCCCHHHHHhHcCCCccc
Q 036793 248 CLAVDADAV-------AELRSELGHQLATKSHDLNLRGIGAVVYRVPELQNDQLVKISLRSVDSEDTTAIAQEFGGGGHR 320 (338)
Q Consensus 248 ~~~v~~~~~-------~~~~s~~~~~l~~~~~~~~i~~v~~~v~~~~e~~~~~~~kvSlRS~~~idv~~IA~~fGGGGH~ 320 (338)
... ..+.. +.+...+...+ .++++.+++++. ....+...++.+.++ .+.+.+.||+ |.
T Consensus 216 ~~v-~~~~~~~~~~~~~~~~~~v~~~~-------~~~g~d~~~l~~-~~i~~~~~~l~v~g~----~~~~~~af~~--~~ 280 (307)
T 2eb0_A 216 GQV-EVIDVSEVESKKEDIYKLLEEKL-------KNEGYDLIVFLI-TDIMKEGSEALVVGN----KEMFEKAFNV--KV 280 (307)
T ss_dssp EEE-EESCTHHHHHHHHHHHHHHHHHH-------HHTTCSEEEEEE-EETTTTEEEEEEEEC----HHHHHHHC-----C
T ss_pred EEE-EecCHHHHHHHHHHHHHHHHHHH-------HhCCCCEEEEEE-EEecCCCcEEEEEeC----HHHHHHHhCC--CC
Confidence 333 32211 22223222222 345677666665 221122234444443 3556788954 77
Q ss_pred cccccccch
Q 036793 321 NASSFMLSS 329 (338)
Q Consensus 321 ~AAG~~~~~ 329 (338)
.+..+.+++
T Consensus 281 ~~~~~~l~g 289 (307)
T 2eb0_A 281 EGNSVFLEG 289 (307)
T ss_dssp CSSEEEETT
T ss_pred CCCeEECCC
Confidence 776665553
No 7
>1k20_A Manganese-dependent inorganic pyrophosphatase; family II ppase, binuclear metal centre, hydrolas; 1.50A {Streptococcus gordonii} SCOP: c.107.1.1 PDB: 1wpp_A 2enx_A* 1i74_A
Probab=99.89 E-value=6.3e-23 Score=189.77 Aligned_cols=167 Identities=14% Similarity=0.029 Sum_probs=116.6
Q ss_pred cEEEecC-CCchHHHHHHHHHHHH-hcCCCCeEEe-eCCCC-------CCCC--CCCC-CC-CC-C-CeEEEEeCCCChH
Q 036793 29 PAVLYHY-PCPDGAFAALAAHLYF-SSSSVPALFF-PNTVY-------NPIS--PNNL-PL-HE-I-DDLYLLDYVGPSG 92 (338)
Q Consensus 29 ~iii~h~-~D~DgigSa~~l~~~~-~~~~~~v~~~-p~~~~-------~~~~--~~~~-~~-~~-~-~~viivD~~~~~~ 92 (338)
++|++|. ||+|++|||+++++++ ++.|+++.++ |.... .... ..++ .. .. . +.+|+||++.+.+
T Consensus 3 i~I~gH~~pD~DaigSalal~~~l~~~~g~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~vilVD~~~~~r 82 (310)
T 1k20_A 3 ILVFGHQNPDSDAIGSSYAFAYLAREAYGLDTEAVALGEPNEETAFVLDYFGVAAPRVITSAKAEGAEQVILTDHNEFQQ 82 (310)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHHHHHHHCCCEEECBSSCCCHHHHHHHHHHTCCCCCBCSCTGGGTCSEEEEESCCCGGG
T ss_pred EEEEcCCCCChHHHHHHHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHcCCCchhhhhhhccccCceEEEEcCCCccc
Confidence 5666676 8999999999999999 8888776653 22100 0000 0111 11 11 2 5799999998864
Q ss_pred HHHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhcccCCccccchhhHHHHHHHHHhhccccc
Q 036793 93 FVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFLDNGLQLHREFERLSLLFDYIEDGDLW 172 (338)
Q Consensus 93 ~~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~~~~~~~a~~~~~~~~l~gi~~Dtd~~ 172 (338)
....+ .....+++||||+.+... ...+...++.+ ..|||+|+++++++.+++++ +..|+.+|+||++||++|
T Consensus 83 ~~~~~-~~~~~~~iIDHH~~~~~~-~~~~~~~~i~p-~gSt~tiv~~~~~~~~~~i~-----~~~A~~L~~gI~~DT~~F 154 (310)
T 1k20_A 83 SVADI-AEVEVYGVVDHHRVANFE-TANPLYMRLEP-VGSASSIVYRMFKEHSVAVS-----KEIAGLMLSGLISDTLLL 154 (310)
T ss_dssp SCTTG-GGSEEEEEEECSCCCSCC-CSSCCEEEECS-SSCHHHHHHHHHHHTTCCCC-----HHHHHHHHHHHHHHHTTT
T ss_pred ccccc-cccCEEEEECCCcCCCcC-CCCCcEEEEEE-ccHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHHhcCC
Confidence 32222 334478999999997521 01122344544 67999999999999888875 566678899999999999
Q ss_pred cccccchHHHHhhhhcc-cccccccCCHH-HHHHHHc
Q 036793 173 RWRLENSKAFSSGLKDL-NIEFSFQLNPC-LFEQLLS 207 (338)
Q Consensus 173 ~~~~~~~~~~~~a~~l~-~~g~~~~~~~~-~~~~l~~ 207 (338)
+|+++++++|++|++|+ ..|+ |+. +.++++.
T Consensus 155 ~~~~tt~~d~~aa~~L~~~~G~----d~~~i~~~l~~ 187 (310)
T 1k20_A 155 KSPTTHPTDKAIAPELAELAGV----NLEEYGLAMLK 187 (310)
T ss_dssp TSTTCCHHHHHHHHHHHHHHTS----CHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC----CHHHHHHHHHH
Confidence 99999999999999999 5884 555 5556655
No 8
>2qb7_A Exopolyphosphatase; A/B/A structure, DHH family phosphatase, hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2qb6_A 2qb8_A*
Probab=99.75 E-value=2.2e-19 Score=171.36 Aligned_cols=154 Identities=13% Similarity=0.040 Sum_probs=103.8
Q ss_pred CCcEEEecC-CCchHHHHHHHHHHHHhcCC---------CC--eEEe---eC--CCCCC-----C---C--CCCCC----
Q 036793 27 KKPAVLYHY-PCPDGAFAALAAHLYFSSSS---------VP--ALFF---PN--TVYNP-----I---S--PNNLP---- 75 (338)
Q Consensus 27 ~~~iii~h~-~D~DgigSa~~l~~~~~~~~---------~~--v~~~---p~--~~~~~-----~---~--~~~~~---- 75 (338)
..++|+.|. ||+|++|||+++++++++.+ ++ +..+ |. ...++ + . .+++.
T Consensus 28 ~~iiV~gH~~pD~DaigSalala~~l~~~gk~~~~~~~~~~~~~v~v~~~~r~~~~~~~e~~~~L~~~~~~~~~l~~~~~ 107 (397)
T 2qb7_A 28 VLTICVGNESADMDSIASAITYSYCQYIYNEGTYSEEKKKGSFIVPIIDIPREDLSLRRDVMYVLEKLKIKEEELFFIED 107 (397)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHHHHHHSGGGSSSCCCCCCEEECSSCGGGGGGCHHHHHHHHHTTCCGGGSCCHHH
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHHHhcCCccccccccCCccEEEEEcccccccccCHHHHHHHHHcCCChhhcccHHH
Confidence 345566665 79999999999999997765 22 2222 10 00100 0 0 11110
Q ss_pred CC--------CCC-eEEEEeCCCChHHHHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhc--
Q 036793 76 LH--------EID-DLYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNK-- 144 (338)
Q Consensus 76 ~~--------~~~-~viivD~~~~~~~~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~-- 144 (338)
.. ..+ .+|+||++...+....+ ....+++||||+.+... ......++ ++..|||+|+++++++.
T Consensus 108 ~~~~~~~~~~~~~~~vilVD~~~~~r~~~~~--~~~~~~iIDHH~~~~~~--~~~~~~~i-~p~gSt~tlv~~~~~~~~~ 182 (397)
T 2qb7_A 108 LKSLKQNVSQGTELNSYLVDNNDTPKNLKNY--IDNVVGIIDHHFDLQKH--LDAEPRIV-KVSGSCSSLVFNYWYEKLQ 182 (397)
T ss_dssp HHHHHHHSCTTCEEEEEEESCSSCCGGGTTT--CCEEEEEEECSCCCCCC--TTCSSEEE-CCCSCHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcccCCCeEEEecCCCcccCcccc--cccEEEEEcCCCCCCCC--CCCCccEE-eecccHHHHHHHHHHHhhh
Confidence 01 223 58999999887543333 34467899999986542 11233344 44679999999999986
Q ss_pred -ccCCccccchhhHHHHHHHHHhhccccccccccchHHHHhhhhcccc
Q 036793 145 -FLDNGLQLHREFERLSLLFDYIEDGDLWRWRLENSKAFSSGLKDLNI 191 (338)
Q Consensus 145 -~~~~~~~~a~~~~~~~~l~gi~~Dtd~~~~~~~~~~~~~~a~~l~~~ 191 (338)
+++++ +..|+.+|+||++||++|+ ++++++++++|++|++.
T Consensus 183 ~~~~i~-----~~~A~~L~~gI~~DT~~F~-~~tt~~d~~aa~~L~~~ 224 (397)
T 2qb7_A 183 GDREVV-----MNIAPLLMGAILIDTSNMR-RKVEESDKLAIERCQAV 224 (397)
T ss_dssp TCHHHH-----HHHHHHHHHHHHHHTTTTT-SSCCHHHHHHHHHHHHH
T ss_pred ccCCcC-----HHHHHHHHHHHHHhhcccC-CCCCHHHHHHHHHHHHH
Confidence 66663 5667788999999999999 68999999999999876
No 9
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=27.18 E-value=1.1e+02 Score=25.81 Aligned_cols=63 Identities=10% Similarity=-0.088 Sum_probs=40.8
Q ss_pred CCCCeEEEEeCCCChHHHHHHhhCCCcEEEEcCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHHhccc
Q 036793 77 HEIDDLYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIEGENVSKTIDMERSGATIAYDYFKNKFL 146 (338)
Q Consensus 77 ~~~~~viivD~~~~~~~~~~l~~~~~~viviDHH~~~~~~~~~~~~~~~~~d~~~s~a~lv~~~l~~~~~ 146 (338)
...+-+|++........++.+.+.+.++|.+|....... ...+......++.++.++|.++|.
T Consensus 65 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~-------~~~V~~D~~~~g~~a~~~L~~~G~ 127 (288)
T 3gv0_A 65 GSADGVIISKIEPNDPRVRFMTERNMPFVTHGRSDMGIE-------HAFHDFDNEAYAYEAVERLAQCGR 127 (288)
T ss_dssp TCCSEEEEESCCTTCHHHHHHHHTTCCEEEESCCCSSCC-------CEEEEECHHHHHHHHHHHHHHTTC
T ss_pred CCccEEEEecCCCCcHHHHHHhhCCCCEEEECCcCCCCC-------CcEEEeCcHHHHHHHHHHHHHCCC
Confidence 356788888765555566677777779999998754432 112222235677788888887663
No 10
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=25.15 E-value=2.8e+02 Score=24.06 Aligned_cols=93 Identities=6% Similarity=-0.034 Sum_probs=49.3
Q ss_pred HHHHHHhcCCCCeEEeeCCCCCCCC----CCCCCCCCCCeEEEEeCCCChHHHHHHhhCCCcEEEEcCCCCCCCCCCCCC
Q 036793 46 AAHLYFSSSSVPALFFPNTVYNPIS----PNNLPLHEIDDLYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIEGE 121 (338)
Q Consensus 46 ~l~~~~~~~~~~v~~~p~~~~~~~~----~~~~~~~~~~~viivD~~~~~~~~~~l~~~~~~viviDHH~~~~~~~~~~~ 121 (338)
++...+.+.|..+.+.... ..+.. ++.+.....+-+|++........++.+...+.+++.+|.......
T Consensus 89 gi~~~a~~~g~~~~~~~~~-~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~------ 161 (344)
T 3kjx_A 89 GINQVLEDTELQPVVGVTD-YLPEKEEKVLYEMLSWRPSGVIIAGLEHSEAARAMLDAAGIPVVEIMDSDGKPV------ 161 (344)
T ss_dssp HHHHHHTSSSSEEEEEECT-TCHHHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHHCSSCEEEEEECSSCCS------
T ss_pred HHHHHHHHCCCEEEEEeCC-CCHHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHhCCCCEEEEeCCCCCCC------
Confidence 4555666666655543321 11110 111112356778887655555556666666778999964332221
Q ss_pred CcccccCCCCcHHHHHHHHHHhccc
Q 036793 122 NVSKTIDMERSGATIAYDYFKNKFL 146 (338)
Q Consensus 122 ~~~~~~d~~~s~a~lv~~~l~~~~~ 146 (338)
...+..| ...++.++.++|.++|.
T Consensus 162 ~~~V~~D-~~~~~~~a~~~L~~~G~ 185 (344)
T 3kjx_A 162 DAMVGIS-HRRAGREMAQAILKAGY 185 (344)
T ss_dssp SEEEEEC-HHHHHHHHHHHHHHHTC
T ss_pred CCEEEEC-cHHHHHHHHHHHHHCCC
Confidence 1112223 35667788888877663
No 11
>3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus}
Probab=24.20 E-value=66 Score=23.67 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=21.1
Q ss_pred CCeEEEEEe-cCC---CCCHHHHHhH----cC--CCccccccccc
Q 036793 292 DQLVKISLR-SVD---SEDTTAIAQE----FG--GGGHRNASSFM 326 (338)
Q Consensus 292 ~~~~kvSlR-S~~---~idv~~IA~~----fG--GGGH~~AAG~~ 326 (338)
++++.+... |.+ .+++++++++ +| |||.|..|=+.
T Consensus 47 ~~kv~~v~~v~~~~~~~~~A~~lvk~v~~~~gGkGGGkp~~AQgg 91 (111)
T 3g98_A 47 GDKINFVIGVSKEISDKVNAKEVIREVGKVLKGGGGGRADLAQGG 91 (111)
T ss_dssp TTEEEEEEEECGGGTTTSCHHHHHHHHHHHTTBCCEECSSEEEEE
T ss_pred CCcEEEEEEECHHHhccCCHHHHHHHHHHHcCCCcCCcHHHeeec
Confidence 566555554 332 3788776655 44 78888765443
No 12
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=23.99 E-value=31 Score=23.95 Aligned_cols=12 Identities=17% Similarity=0.363 Sum_probs=8.6
Q ss_pred CHHHHHhHcCCC
Q 036793 306 DTTAIAQEFGGG 317 (338)
Q Consensus 306 dv~~IA~~fGGG 317 (338)
.+.++++.||||
T Consensus 43 el~kL~~~YGgg 54 (77)
T 2cly_C 43 ELFKLKQMYGKA 54 (77)
T ss_dssp HHHHHHHHHCSS
T ss_pred HHHHHHHHHCcc
Confidence 356678888876
No 13
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=20.73 E-value=1.7e+02 Score=24.64 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=51.8
Q ss_pred HHHHHHhcCCCCeEEeeCCCCCCCC----CCCCCCCCCCeEEEEeCCCChHHHHHHhhCCCcEEEEcCCCCCCCCCCCCC
Q 036793 46 AAHLYFSSSSVPALFFPNTVYNPIS----PNNLPLHEIDDLYLLDYVGPSGFVQQVSSKVSKVVILDHHKTALEAPIEGE 121 (338)
Q Consensus 46 ~l~~~~~~~~~~v~~~p~~~~~~~~----~~~~~~~~~~~viivD~~~~~~~~~~l~~~~~~viviDHH~~~~~~~~~~~ 121 (338)
++...+++.|..+.++... ..... ++.+.....+-+|+.-.......++.+.+.+.+++.+|.......
T Consensus 29 gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~------ 101 (291)
T 3egc_A 29 GVESEARHKGYSVLLANTA-EDIVREREAVGQFFERRVDGLILAPSEGEHDYLRTELPKTFPIVAVNRELRIPG------ 101 (291)
T ss_dssp HHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEECCCSSCCHHHHHSSCTTSCEEEESSCCCCTT------
T ss_pred HHHHHHHHCCCEEEEEeCC-CCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHHHhhccCCCEEEEecccCCCC------
Confidence 4566666777665555422 11100 111112356777776655444566666666779999998765432
Q ss_pred CcccccCCCCcHHHHHHHHHHhccc
Q 036793 122 NVSKTIDMERSGATIAYDYFKNKFL 146 (338)
Q Consensus 122 ~~~~~~d~~~s~a~lv~~~l~~~~~ 146 (338)
...+......++.++.++|.++|.
T Consensus 102 -~~~V~~D~~~~g~~a~~~L~~~G~ 125 (291)
T 3egc_A 102 -CGAVLSENVRGARTAVEYLIARGH 125 (291)
T ss_dssp -CEEEEECHHHHHHHHHHHHHHTTC
T ss_pred -CCEEEECcHHHHHHHHHHHHHcCC
Confidence 112222235666778888877653
Done!