Your job contains 1 sequence.
>036794
MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSR
SLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQIPNFV
TSKVAPVNGVAGVEIEMIEELGEKNLVERAGLIFWKGRQTQDVRVKTLSEQLHDIPMDSD
DLISSNVQFCGSRSGLEKTGEEHGGIRGYSNGLHRVKRRKFRGARRARTASALRDVGGQS
EMSVASNSLAQGLACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMA
GRSLTSCGLSDSRIRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQSTE
HAGWVHDYSGELGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTF
RDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF
CNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDS
WSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEG
IEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLA
LSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSK
EEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLD
LENAGGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHT
GSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGA
APTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPA
SKDGSSQMVIDSESIIGNRGPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEI
VEVPASPRETKDHAENRADYSKRASLSERKKLGEQSQCQSIVRSKVSLAHVIQQAEGCTQ
RNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICRLKIRRRKPLSLLKLV
SCGKCLSSKSPR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 036794
(1152 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2172013 - symbol:AT5G45720 species:3702 "Arabi... 1494 4.5e-235 4
TAIR|locus:2065299 - symbol:STI "STICHEL" species:3702 "A... 871 4.1e-87 1
TAIR|locus:2012497 - symbol:AT1G14460 species:3702 "Arabi... 852 3.8e-85 1
TAIR|locus:2121934 - symbol:AT4G24790 species:3702 "Arabi... 690 1.6e-78 3
TIGR_CMR|DET_0585 - symbol:DET_0585 "DNA polymerase III, ... 450 2.1e-41 1
TIGR_CMR|BA_0019 - symbol:BA_0019 "DNA polymerase III, ga... 440 2.5e-40 1
UNIPROTKB|Q97RF7 - symbol:dnaX "DNA polymerase III, gamma... 424 2.9e-40 2
TIGR_CMR|CHY_2675 - symbol:CHY_2675 "putative DNA polymer... 417 7.2e-38 1
UNIPROTKB|P09122 - symbol:dnaX "DNA polymerase III subuni... 403 3.6e-35 1
TIGR_CMR|GSU_0094 - symbol:GSU_0094 "DNA polymerase III, ... 405 4.2e-35 1
UNIPROTKB|Q2GDS0 - symbol:NSE_0492 "Putative DNA polymera... 390 5.6e-35 1
TIGR_CMR|NSE_0492 - symbol:NSE_0492 "putative DNA polymer... 390 5.6e-35 1
TIGR_CMR|CJE_1293 - symbol:CJE_1293 "DNA polymerase III, ... 382 4.0e-34 1
TIGR_CMR|ECH_0014 - symbol:ECH_0014 "DNA polymerase III, ... 368 7.6e-32 1
TIGR_CMR|SPO_3550 - symbol:SPO_3550 "DNA polymerase III, ... 373 2.9e-31 1
TIGR_CMR|CBU_0659 - symbol:CBU_0659 "DNA polymerase III, ... 362 1.0e-30 1
UNIPROTKB|P06710 - symbol:dnaX species:83333 "Escherichia... 370 1.1e-30 1
UNIPROTKB|O83970 - symbol:TP_1005 "DNA polymerase III, su... 367 1.2e-30 1
TIGR_CMR|SO_2013 - symbol:SO_2013 "DNA polymerase III, ga... 383 3.0e-30 2
UNIPROTKB|Q47XQ9 - symbol:dnaX "DNA polymerase III, gamma... 359 2.7e-29 1
TIGR_CMR|CPS_3744 - symbol:CPS_3744 "DNA polymerase III, ... 359 2.7e-29 1
UNIPROTKB|Q9KT51 - symbol:VC_1054 "DNA polymerase III, su... 362 2.8e-29 2
TIGR_CMR|VC_1054 - symbol:VC_1054 "DNA polymerase III, su... 362 2.8e-29 2
TIGR_CMR|APH_1348 - symbol:APH_1348 "DNA polymerase III, ... 326 5.5e-27 1
UNIPROTKB|P63975 - symbol:dnaX "DNA polymerase III subuni... 291 4.0e-22 1
UNIPROTKB|Q0C591 - symbol:dnaX "DNA polymerase III, subun... 288 8.5e-22 1
WB|WBGene00004340 - symbol:rfc-4 species:6239 "Caenorhabd... 216 9.1e-15 1
UNIPROTKB|P53016 - symbol:rfc-4 "Replication factor C sub... 216 9.1e-15 1
UNIPROTKB|P35249 - symbol:RFC4 "Replication factor C subu... 206 2.1e-13 1
UNIPROTKB|F1NIY0 - symbol:RFC4 "Uncharacterized protein" ... 200 9.8e-13 1
UNIPROTKB|F1NEW1 - symbol:RFC4 "Uncharacterized protein" ... 200 1.0e-12 1
UNIPROTKB|C9JZI1 - symbol:RFC4 "Replication factor C subu... 198 1.2e-12 1
UNIPROTKB|F1SFI3 - symbol:RFC4 "Uncharacterized protein" ... 198 1.8e-12 1
POMBASE|SPAC23D3.02 - symbol:rfc2 "DNA replication factor... 195 2.9e-12 1
ZFIN|ZDB-GENE-040907-1 - symbol:rfc5 "replication factor ... 154 3.0e-12 2
DICTYBASE|DDB_G0286027 - symbol:rfc4 "replication factor ... 195 3.2e-12 1
GENEDB_PFALCIPARUM|PFB0840w - symbol:PFB0840w "replicatio... 194 3.3e-12 1
UNIPROTKB|O96260 - symbol:PFB0840w "Replication factor C,... 194 3.3e-12 1
UNIPROTKB|Q29RS9 - symbol:RFC4 "Uncharacterized protein" ... 192 6.1e-12 1
UNIPROTKB|E2R2M6 - symbol:RFC4 "Uncharacterized protein" ... 193 6.4e-12 1
FB|FBgn0030871 - symbol:CG8142 species:7227 "Drosophila m... 192 7.4e-12 1
RGD|1310142 - symbol:Rfc4 "replication factor C (activato... 189 1.8e-11 1
SGD|S000003829 - symbol:RFC2 "Subunit of heteropentameric... 188 2.1e-11 1
CGD|CAL0002015 - symbol:RFC2 species:5476 "Candida albica... 186 2.3e-11 2
RGD|1309280 - symbol:Rfc5 "replication factor C (activato... 148 2.5e-11 2
ASPGD|ASPL0000039105 - symbol:AN2969 species:162425 "Emer... 188 2.8e-11 1
MGI|MGI:2146571 - symbol:Rfc4 "replication factor C (acti... 187 3.0e-11 1
MGI|MGI:1919401 - symbol:Rfc5 "replication factor C (acti... 148 5.1e-11 2
UNIPROTKB|Q9KQI3 - symbol:VC_2015 "DNA polymerase III, de... 182 7.2e-11 1
TIGR_CMR|VC_2015 - symbol:VC_2015 "DNA polymerase III, de... 182 7.2e-11 1
UNIPROTKB|J9NUF8 - symbol:RFC5 "Uncharacterized protein" ... 144 1.6e-10 2
UNIPROTKB|Q32PI3 - symbol:RFC5 "Uncharacterized protein" ... 145 2.0e-10 2
UNIPROTKB|P40937 - symbol:RFC5 "Replication factor C subu... 145 2.3e-10 2
UNIPROTKB|E2RCF4 - symbol:RFC5 "Uncharacterized protein" ... 144 2.3e-10 2
WB|WBGene00018409 - symbol:F44B9.8 species:6239 "Caenorha... 179 2.5e-10 1
UNIPROTKB|F1RKG3 - symbol:RFC5 "Uncharacterized protein" ... 145 2.7e-10 2
TIGR_CMR|BA_0028 - symbol:BA_0028 "DNA polymerase III, de... 175 4.7e-10 1
FB|FBgn0032244 - symbol:RfC3 "Replication factor C subuni... 133 5.4e-10 2
UNIPROTKB|E7DN81 - symbol:E7DN81 "DnaX DNA polymerase III... 174 7.0e-10 1
ASPGD|ASPL0000017750 - symbol:AN8064 species:162425 "Emer... 173 1.4e-09 1
TIGR_CMR|DET_0535 - symbol:DET_0535 "DNA polymerase III, ... 171 1.5e-09 1
POMBASE|SPAC27E2.10c - symbol:rfc3 "DNA replication facto... 134 2.0e-09 2
CGD|CAL0003213 - symbol:RCF3 species:5476 "Candida albica... 164 1.1e-08 1
ZFIN|ZDB-GENE-040824-3 - symbol:rfc4 "replication factor ... 162 1.8e-08 1
DICTYBASE|DDB_G0282235 - symbol:rfc5 "replication factor ... 161 2.1e-08 1
TIGR_CMR|GSU_2230 - symbol:GSU_2230 "DNA polymerase III, ... 158 3.7e-08 1
UNIPROTKB|O06363 - symbol:Rv3644c "Possible DNA polymeras... 158 6.3e-08 1
UNIPROTKB|C9J8M3 - symbol:RFC4 "Replication factor C subu... 142 3.6e-07 1
TAIR|locus:2180315 - symbol:EMB2775 "EMBRYO DEFECTIVE 277... 150 3.7e-07 1
TAIR|locus:2204710 - symbol:RFC3 "replication factor C su... 150 4.0e-07 1
SGD|S000000291 - symbol:RFC5 "Subunit of heteropentameric... 142 9.2e-07 2
SGD|S000005234 - symbol:RFC3 "Subunit of heteropentameric... 96 2.2e-06 2
ZFIN|ZDB-GENE-050306-29 - symbol:rfc2 "replication factor... 137 1.2e-05 1
FB|FBgn0260985 - symbol:RfC4 "Replication factor C subuni... 112 1.3e-05 2
UNIPROTKB|P35250 - symbol:RFC2 "Replication factor C subu... 134 2.1e-05 1
CGD|CAL0004366 - symbol:RFC5 species:5476 "Candida albica... 134 2.2e-05 1
UNIPROTKB|I3LHX6 - symbol:RFC2 "Uncharacterized protein" ... 131 3.0e-05 1
UNIPROTKB|F8W9B4 - symbol:RFC5 "Replication factor C subu... 129 3.4e-05 1
MGI|MGI:1341868 - symbol:Rfc2 "replication factor C (acti... 132 3.4e-05 1
RGD|621198 - symbol:Rfc2 "replication factor C (activator... 132 3.4e-05 1
UNIPROTKB|P53033 - symbol:RFC2 "Replication factor C subu... 132 3.6e-05 1
FB|FBgn0028700 - symbol:RfC38 "Replication factor C 38kD ... 132 4.4e-05 1
UNIPROTKB|Q05B83 - symbol:RFC2 "Replication factor C subu... 130 5.8e-05 1
UNIPROTKB|E2QSU1 - symbol:RFC2 "Uncharacterized protein" ... 127 0.00017 2
UNIPROTKB|F6ULR2 - symbol:RFC2 "Uncharacterized protein" ... 127 0.00019 2
WB|WBGene00004339 - symbol:rfc-3 species:6239 "Caenorhabd... 124 0.00027 1
UNIPROTKB|Q18547 - symbol:rfc-3 "Protein RFC-3" species:6... 124 0.00027 1
TAIR|locus:2015233 - symbol:RFC2 "replication factor C 2"... 106 0.00049 2
WB|WBGene00004338 - symbol:rfc-2 species:6239 "Caenorhabd... 100 0.00055 2
TIGR_CMR|CBU_0500 - symbol:CBU_0500 "DNA polymerase III, ... 119 0.00077 1
GENEDB_PFALCIPARUM|PF14_0601 - symbol:PF14_0601 "replicat... 127 0.00077 2
UNIPROTKB|Q8IKK4 - symbol:PF14_0601 "Replication factor C... 127 0.00077 2
>TAIR|locus:2172013 [details] [associations]
symbol:AT5G45720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
EMBL:CP002688 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
IPI:IPI00536419 RefSeq:NP_199384.2 UniGene:At.51078
UniGene:At.70630 ProteinModelPortal:F4KEM0 SMR:F4KEM0 PRIDE:F4KEM0
EnsemblPlants:AT5G45720.1 GeneID:834611 KEGG:ath:AT5G45720
OMA:ESGRSEI Uniprot:F4KEM0
Length = 966
Score = 1494 (531.0 bits), Expect = 4.5e-235, Sum P(4) = 4.5e-235
Identities = 299/444 (67%), Positives = 356/444 (80%)
Query: 337 SSSTNSGAEALPLLVEASGSQSTEHAGWVHDYSGELGIFADHLLKHAVDSDLASEGRSGG 396
S S++S EALPLLV+++ ++ WVHDYSGELGIFAD+LLK+ DS + G+
Sbjct: 284 SDSSSSDREALPLLVDSADNEE-----WVHDYSGELGIFADNLLKNGKDSVI---GKKSS 335
Query: 397 QQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGK 456
++N HQ+ TQKY PRTFRDL+GQNLV QALSNA+ +R+VGLLYVF+GP+GTGK
Sbjct: 336 RKN-----TRWHQSFTQKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGK 390
Query: 457 TSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNM 516
TSCAR+FARALNC S EQ KPCG C+SC+S+D GK+R I+E+GPV +FDFE++LD +
Sbjct: 391 TSCARVFARALNCHSTEQSKPCGVCSSCVSYDDGKNRYIREMGPVKSFDFENLLDKTN-- 448
Query: 517 VTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576
+ Q + +FDDCDT+S D W+ +SK+VDRAPRRVVF+LV SSLD LPHII+SRCQ
Sbjct: 449 -IRQQQKQQLVLIFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQ 507
Query: 577 KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRI 636
KFFFPK+KD DII +LQ IASKE I+IDKDALKL+ASRSDGSLRDAEMTLEQLSLLG RI
Sbjct: 508 KFFFPKLKDVDIIDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLLGTRI 567
Query: 637 SVPLVQELVGLISDEKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQLATVITDI 696
SVPLVQE+VGLISDEK TVNTVKNLR+IMETG+EPLALMSQLATVITDI
Sbjct: 568 SVPLVQEMVGLISDEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMSQLATVITDI 627
Query: 697 LAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKXXXXXXXXXX 756
LAGSYDFTKD+ +RKFFRRQPLSKE+MEKL+QALKTLSE+EKQLR+SNDK
Sbjct: 628 LAGSYDFTKDQCKRKFFRRQPLSKEDMEKLKQALKTLSESEKQLRVSNDKLTWLTAALLQ 687
Query: 757 XXPDQQYVLP-SSSADTSFSHSPL 779
PD+QY+LP SSSAD SF+H+PL
Sbjct: 688 LAPDKQYLLPHSSSADASFNHTPL 711
Score = 302 (111.4 bits), Expect = 4.5e-235, Sum P(4) = 4.5e-235
Identities = 80/172 (46%), Positives = 97/172 (56%)
Query: 982 MAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPASPRETKDHAENRADYS 1041
+ P+ + R + + +S Q E GR+EIVEV S E+
Sbjct: 806 LGSPVTLEMRTESKKDLGFSSLQGLSNGERFRESGRSEIVEVADS--------ESPMTRV 857
Query: 1042 KRASLSERKKLGEQSQCQSIVRSKVSLAHVIQQAEGCTQRNGWSKRKAVSIAEKLEQENL 1101
+R L E + Q+Q QSIVR KVSLA VI+QAEG N WSK KAV IA KLEQENL
Sbjct: 858 RRKHL-EASQNQNQNQNQSIVRGKVSLAQVIKQAEG----NSWSKHKAVEIANKLEQENL 912
Query: 1102 RLEPRSRSLLCWKASKVTXXXXXXXXXXXXXPL--SLLKLVSCGKCLSSKSP 1151
+LEPRSRSL+CWKAS+ T SLLKLVSCGKCLS++SP
Sbjct: 913 KLEPRSRSLICWKASRSTRRKLSRLKVRTRKLRLHSLLKLVSCGKCLSTRSP 964
Score = 295 (108.9 bits), Expect = 4.5e-235, Sum P(4) = 4.5e-235
Identities = 76/193 (39%), Positives = 103/193 (53%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMH---KHSPILADRSI-MRDLMVL 56
M+R R+LKD+NGDI +HLRNHIHLTNCIHLKNHMH K SP+L DRS+ MRDL+VL
Sbjct: 1 MSRVASSRVLKDSNGDIGEHLRNHIHLTNCIHLKNHMHNNNKQSPVLTDRSLLMRDLVVL 60
Query: 57 QRSRSLRDXXXXXXXXXXXXVVDLLPKKGDNDGMIREGRRSVGIEXXXXXXXXXXXXPQI 116
QRSRSLRD K+ D REGRR G+ ++
Sbjct: 61 QRSRSLRDPSASPNL-----------KEDHQDS--REGRRRSGLRLSGSSPIVSFGTSKV 107
Query: 117 -PNFVTSKVAPVNGVAGVEIEMIEELGEKNLVERAGLIFWKGRQTQDVRVKTLSEQLHDI 175
P+ + E+ + + V + + ++ + VKTLS+QL+++
Sbjct: 108 TPSDEKFDRSSRKSYRVEEVNEVYSVPSVKSVSKDRI----NKKVNEAIVKTLSDQLNEV 163
Query: 176 PMDSDDLISSNVQ 188
DSDDL+S NV+
Sbjct: 164 GGDSDDLVSCNVR 176
Score = 261 (96.9 bits), Expect = 9.4e-231, Sum P(4) = 9.4e-231
Identities = 75/205 (36%), Positives = 113/205 (55%)
Query: 860 SGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEK 919
S +R +E+IWL V+ ++ NG +EFLY+EGK+ S+S G+AP VQL F S + KS AE
Sbjct: 734 SCKNRPSVEDIWLAVIENVRVNGLREFLYKEGKIFSISIGSAPMVQLMFNSPIAKSTAEN 793
Query: 920 FKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASK----DGSSQMV--IDSE 973
F++ IL+AFE+VLGSP+T+E+R ESK D GF L + G S++V DSE
Sbjct: 794 FEEHILKAFEAVLGSPVTLEMRTESKKDL--GFSSLQGLSNGERFRESGRSEIVEVADSE 851
Query: 974 SIIGNRGPMAGPIEISKRIPRDEG---INGASSQAQQL-HSESLEMGRTEIVEVP--ASP 1027
S + +E S+ +++ + G S AQ + +E + + VE+
Sbjct: 852 SPMTR--VRRKHLEASQNQNQNQNQSIVRGKVSLAQVIKQAEGNSWSKHKAVEIANKLEQ 909
Query: 1028 RETKDHAENRADYSKRASLSERKKL 1052
K +R+ +AS S R+KL
Sbjct: 910 ENLKLEPRSRSLICWKASRSTRRKL 934
Score = 229 (85.7 bits), Expect = 4.5e-235, Sum P(4) = 4.5e-235
Identities = 63/131 (48%), Positives = 79/131 (60%)
Query: 233 LRD--VGGQSEMSVASNSLAQGLACPKYHMXXXXXXXXXRNVTRAPRNGCGIPWNWSRIH 290
+RD G +SEMS+ASNS+ +G KY R+ R CGIP+NWSRIH
Sbjct: 199 VRDNAAGNESEMSIASNSVPRG---EKYE---GEEGGGGRD--REQNMSCGIPFNWSRIH 250
Query: 291 HRGKTFLDMAGRSLTSCGLSDSRIRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPLL 350
HRGKTFLD+AGRSL SCG+SDS+ RK G A P+ SD SSS EALPLL
Sbjct: 251 HRGKTFLDIAGRSL-SCGISDSKGRK-GEAG-------TPMFSDSSSSDR----EALPLL 297
Query: 351 VEASGSQSTEH 361
V+++ ++ H
Sbjct: 298 VDSADNEEWVH 308
Score = 41 (19.5 bits), Expect = 2.2e-47, Sum P(3) = 2.2e-47
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 793 GGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTG 841
GG R N G+P N + + D ++ GIS D K G
Sbjct: 229 GGGRDREQNMSCGIPFNWSRIHHRGKTFLDIAGRSLSCGIS-DSKGRKG 276
Score = 37 (18.1 bits), Expect = 5.9e-47, Sum P(3) = 5.9e-47
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 294 KTFLDMAGRSLTSCGLSDSRIRKAGG 319
+TF D+ G++L LS++ ++ G
Sbjct: 352 RTFRDLLGQNLVVQALSNAIAKRRVG 377
Score = 37 (18.1 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 456 KTSCARIFARALNCQSLEQPKPCGFCNSCISHDR 489
K S ++ R L SL + CG C S S R
Sbjct: 933 KLSRLKVRTRKLRLHSLLKLVSCGKCLSTRSPPR 966
>TAIR|locus:2065299 [details] [associations]
symbol:STI "STICHEL" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0009360 "DNA
polymerase III complex" evidence=IEA] [GO:0010026 "trichome
differentiation" evidence=IMP] [GO:0010091 "trichome branching"
evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0000278 "mitotic cell cycle" evidence=RCA] [GO:0003002
"regionalization" evidence=RCA] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0009888 "tissue development" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010090 "trichome
morphogenesis" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010638 "positive regulation of organelle organization"
evidence=RCA] [GO:0016049 "cell growth" evidence=RCA] [GO:0016926
"protein desumoylation" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0045595 "regulation of cell
differentiation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048589 "developmental growth" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 GO:GO:0005886 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0010091
EMBL:AC004136 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 EMBL:AF264023 IPI:IPI00542444
PIR:T00615 RefSeq:NP_565285.1 UniGene:At.19529 HSSP:P06710
ProteinModelPortal:O64728 SMR:O64728 STRING:O64728 PaxDb:O64728
PRIDE:O64728 EnsemblPlants:AT2G02480.1 GeneID:814777
KEGG:ath:AT2G02480 TAIR:At2g02480 HOGENOM:HOG000244020
InParanoid:O64728 OMA:CHSKTLR PhylomeDB:O64728
ProtClustDB:CLSN2687935 ArrayExpress:O64728 Genevestigator:O64728
Uniprot:O64728
Length = 1218
Score = 871 (311.7 bits), Expect = 4.1e-87, P = 4.1e-87
Identities = 239/703 (33%), Positives = 355/703 (50%)
Query: 271 NVTRAPRNGCGIPWNWSR--IHHRG-------KTFLDMAGRSLTS--CGLSDSRIRKAGG 319
N+ R GCGIP W++ + HRG +F D R+ +S CG S S R+
Sbjct: 298 NLDLPGRQGCGIPCYWTKKAMKHRGGCRSCCSPSFSDTLRRTGSSILCG-SQSVYRRHN- 355
Query: 320 ASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAGW-VHDYS-----GELG 373
HS ++ RS+ LPLL + G + D GEL
Sbjct: 356 -RHSSGGYSKQKIACRSAQGV------LPLLSYGGDGRGGSSLGTGLSDDELSTNYGELD 408
Query: 374 IFADHLL--KHAVDSDLASEGRSG----GQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQN 427
+ A L + S + +G G++ G ++ +QKY P F +L+GQ+
Sbjct: 409 LEAQSRLDGRRWSTSYRSQDGLEAVALDGEEEEGSTPE-TIRSFSQKYRPMFFEELIGQS 467
Query: 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487
+V Q+L NAV R ++ +Y+F GP GTGKTS ARIF+ ALNC + E+ KPCG+C C
Sbjct: 468 IVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVATEEMKPCGYCKECNDF 527
Query: 488 DRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP--PSQYRIFVFDDCDTLSPDSWSAIS 545
GKS++ E+ + + LL N+ T P S Y++FV D+C L +W +
Sbjct: 528 MSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSMYKVFVIDECHLLPSKTWLSFL 587
Query: 546 KVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDK 605
K ++ ++VVFI +++ L+ +P I SRCQKF F K+KD+DI+ L+ IAS E +++D
Sbjct: 588 KFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFDKLKDSDIVVRLKKIASDENLDVDL 647
Query: 606 DALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKXXXXXXXXXXXXT 665
AL LIA +DGSLRDAE LEQLSLLG+RI+ LV ELVG++SDEK T
Sbjct: 648 HALDLIAMNADGSLRDAETMLEQLSLLGKRITTALVNELVGVVSDEKLLELLELALSSDT 707
Query: 666 VNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEK 725
TVK R +++ G +P+ LMSQLA++I DI+AG+Y +++ FF + L++ +ME
Sbjct: 708 AETVKRARELLDLGADPIVLMSQLASLIMDIIAGTYKVVDEKYSNAFFDGRNLTEADMEG 767
Query: 726 LRQALKTLSEAEKQLRMSNDKXX--XXXXXXXXXXPDQQYVLPSSSADTSFSHSPLDLEN 783
L+ ALK LSEAEKQLR+SND+ P SS S + D +
Sbjct: 768 LKHALKLLSEAEKQLRVSNDRSTWFTATLLQLGSMPSPGTTHTGSSRRQSSRATDDDPAS 827
Query: 784 AGGRGMTRKGGER-AEISNKETGVPMNVRLENF-HAENSGDF---IDGNMRKGISLDRKR 838
M K +R + ++ P +V N H+ + F ID N K S +
Sbjct: 828 VSREVMAYK--QRIGGLHFSKSASPASVIKRNGNHSHEAKPFSRVIDNNCYKSSSSSQMI 885
Query: 839 HTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSF 898
+ +A + S S ++ S + +IW + + R + ++ LY GKLIS+S
Sbjct: 886 ESEGSIASHENSIAST--MMLNQRSSEKLNDIWRKCIERCHSKTLRQLLYTHGKLISISE 943
Query: 899 GAAPTVQ-LTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEI 940
V + F + K +AE+F I + E VL + + I
Sbjct: 944 VEGILVAYIAFGENDIKLRAERFLSSITNSIEMVLRRSVEVRI 986
>TAIR|locus:2012497 [details] [associations]
symbol:AT1G14460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 EMBL:CP002684
GO:GO:0005886 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 IPI:IPI00525486 RefSeq:NP_172898.2
UniGene:At.43554 UniGene:At.69297 ProteinModelPortal:F4HW65
SMR:F4HW65 PRIDE:F4HW65 EnsemblPlants:AT1G14460.1 GeneID:838008
KEGG:ath:AT1G14460 OMA:REVIAYK Uniprot:F4HW65
Length = 1116
Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
Identities = 225/685 (32%), Positives = 354/685 (51%)
Query: 277 RNGCGIPWNWSR--IHHRGKTFLDMAGRSLTSCGLSDSRIRKA-----GGASHSRNVPDM 329
R GCGIP+ W++ + HRG RS S SD+ RK G S R
Sbjct: 282 RQGCGIPFYWTKRNLKHRGGC------RSCCSPSFSDTLRRKGSSILCGSQSVYRRHRHS 335
Query: 330 PLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAGWVH---DYS---GELGIFADHLLK-H 382
++ + S LPLL S+ G + D S GE+ + A L
Sbjct: 336 SGRFNKQKLALRSAKGVLPLLKYGGDSRGGSSIGIGYSDDDLSTDFGEIDLEAQSRLDGR 395
Query: 383 AVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKV 442
S S+ ++ G + Q+L+QKY P F +L+GQ++V Q+L NAV + +V
Sbjct: 396 RWSSCCKSQDGEREEEEEGGSTPESIQSLSQKYKPMFFDELIGQSIVVQSLMNAVKKGRV 455
Query: 443 GLLYVFYGPHGTGKTSCARIFARALNCQSL-EQPKPCGFCNSCISHDRGKSRNIKEVGPV 501
+Y+F GP GTGKTS ARI + ALNC + E+ KPCG+C C + GKSR++ E+
Sbjct: 456 AHVYLFQGPRGTGKTSTARILSAALNCDVVTEEMKPCGYCKECSDYMLGKSRDLLELDAG 515
Query: 502 GNFDFESILDLLDNMVTSRPPS--QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFIL 559
E + LL ++T P S +Y++FV D+C L +W ++ K ++ ++ VF+
Sbjct: 516 KKNGAEKVRYLLKKLLTLAPQSSQRYKVFVIDECHLLPSRTWLSLLKFLENPLQKFVFVC 575
Query: 560 VSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSL 619
+++ LD +P I SRCQK+ F K++D DI+ L+ IAS E ++++ AL LIA +DGSL
Sbjct: 576 ITTDLDNVPRTIQSRCQKYIFNKVRDGDIVVRLRKIASDENLDVESQALDLIALNADGSL 635
Query: 620 RDAEMTLEQLSLLGQRISVPLVQELVGLISDEKXXXXXXXXXXXXTVNTVKNLRVIMETG 679
RDAE LEQLSL+G+RI+V LV ELVG++SD+K T TVK R +++ G
Sbjct: 636 RDAETMLEQLSLMGKRITVDLVNELVGVVSDDKLLELLELALSSDTAETVKKARELLDLG 695
Query: 680 VEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQ 739
+P+ +MSQLA++I DI+AG+Y +++ F R+ L++ ++E+L+ ALK LSEAEKQ
Sbjct: 696 ADPILMMSQLASLIMDIIAGAYKALDEKYSEAFLDRRNLTEADLERLKHALKLLSEAEKQ 755
Query: 740 LRMSNDKXXXXXXXXXXXXPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKG---GER 796
LR+S D+ Q +PS T S A ++R+ +R
Sbjct: 756 LRVSTDRSTWFIATLL-----QLGSMPSPGT-THTGSSRRQSSRATEESISREVIAYKQR 809
Query: 797 AEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGG 856
+ + T P ++R SG+ + ++ S + + MA + +A
Sbjct: 810 SGLQCSNTASPTSIR-------KSGNLVR-EVKLSSSSSEVLESDTSMASHDDT--TAST 859
Query: 857 RHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQ-LTFRSHLTKS 915
++ + + +IW++ ++R + K+ LY GKL+S+S V + F K+
Sbjct: 860 MTLTCRNSEKLNDIWIKCVDRCHSKTLKQLLYAHGKLLSISEVEGILVAYIAFGEGEIKA 919
Query: 916 KAEKFKDQILQAFESVLGSPLTIEI 940
+AE+F I + E VL + + I
Sbjct: 920 RAERFVSSITNSIEMVLRRNVEVRI 944
>TAIR|locus:2121934 [details] [associations]
symbol:AT4G24790 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 GO:GO:0005524 EMBL:CP002687
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 IPI:IPI00532502
RefSeq:NP_001119046.1 RefSeq:NP_194210.2 UniGene:At.54505
ProteinModelPortal:F4JRP8 SMR:F4JRP8 PRIDE:F4JRP8
EnsemblPlants:AT4G24790.1 EnsemblPlants:AT4G24790.2 GeneID:828581
KEGG:ath:AT4G24790 OMA:TWLTVAL Uniprot:F4JRP8
Length = 857
Score = 690 (248.0 bits), Expect = 1.6e-78, Sum P(3) = 1.6e-78
Identities = 169/470 (35%), Positives = 255/470 (54%)
Query: 287 SRIHHRGKTFLDMAGRSLTSCGLSDSRIRKAGGASHSRNVPDMPLVSD------RSSSST 340
SR R + L + GR L S S + +AG R L S R S
Sbjct: 110 SRSSERSCSDLSVKGRDLACNAPSISHVEEAGSGGRYRTHYSTKLASSVGEYGSRLGSPM 169
Query: 341 NSGAEALPLLVEAS-GSQSTEHAGWVHDYSGELGIFADHLLKHAVDSDLASEGRSGGQQN 399
NS + + SQS G + +S + + L +G
Sbjct: 170 NSTNHSYYGDEDVDFDSQSNRGCGITYCWSRTPRYRGSNQSSDVEEYPLLPGNGNGESDV 229
Query: 400 LGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSC 459
+ + ++L+QK+ P++F +LVGQ +V + L + ++R ++ +Y+F+GP GTGKTS
Sbjct: 230 VTPSHEVLSRSLSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTST 289
Query: 460 ARIFARALNCQS-LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVT 518
++IFA ALNC S +PCG C+ C S+ G+ R++ E G + S L L
Sbjct: 290 SKIFAAALNCLSQAAHSRPCGLCSECKSYFSGRGRDVMETDS-GKLNRPSYLRSLIKSA- 347
Query: 519 SRPP--SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576
S PP S++++F+ D+C L ++W + +D + VFILV+S L+ LP ++SR Q
Sbjct: 348 SLPPVSSRFKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQ 407
Query: 577 KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRI 636
K+ F K+ DADI L I +EGI+ D+ A+ IAS+SDGSLRDAE+ L+QLSLLG+RI
Sbjct: 408 KYHFSKVCDADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQLSLLGKRI 467
Query: 637 SVPLVQELVGLISDEKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQLATVITDI 696
+ L +L+G++SD++ T NTV R +M + ++P+ L+SQLA VI DI
Sbjct: 468 TTSLAYKLIGVVSDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQLANVIMDI 527
Query: 697 LAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDK 746
+AG+ + R +F R S+EEM+KLR ALK LS+AEK LR S ++
Sbjct: 528 IAGNSQESSSATRLRFLTRHT-SEEEMQKLRNALKILSDAEKHLRASKNQ 576
Score = 95 (38.5 bits), Expect = 1.6e-78, Sum P(3) = 1.6e-78
Identities = 35/132 (26%), Positives = 61/132 (46%)
Query: 812 LENFHAENSGDFIDGNMRKGISLDRK-RHTGSGMALQQ-KSPLSAGGRHVSGNSRNGIEE 869
L+ + ++S D N R I+ D + T SG KS G N +E
Sbjct: 585 LQLSNTDSSSFATDENGRNQINKDVELSSTSSGCPGDVIKSDAEKGQER---NCNETVES 641
Query: 870 IWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTV-QLTFRSHLTKSKAEKFKDQILQAF 928
+W V + ++ K FL++ G+L S++ + +L F + ++AEK I +F
Sbjct: 642 VWKTVTDLCCSDSLKRFLWKRGRLTSLTVDKGVAIAELEFYTPQHVARAEKSWKLIADSF 701
Query: 929 ESVLGSPLTIEI 940
+SVLG + I++
Sbjct: 702 QSVLGCNVEIQM 713
Score = 53 (23.7 bits), Expect = 1.6e-78, Sum P(3) = 1.6e-78
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 39 KHSPILADRSIMRDLMVLQRSRSLRDXXXXXXXXXXXXVVDLLPKKGDNDGM 90
+HS D I R L+ L+R RSLRD + ++ + G N+G+
Sbjct: 6 RHS---VDVPITRTLVALRRVRSLRDPCTTSMSKFASLLDNVKWETGSNNGI 54
>TIGR_CMR|DET_0585 [details] [associations]
symbol:DET_0585 "DNA polymerase III, gamma and tau
subunits, putative" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0009360 "DNA polymerase III complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_181327.1 ProteinModelPortal:Q3Z8X2 STRING:Q3Z8X2
GeneID:3230093 KEGG:det:DET0585 PATRIC:21608239 OMA:ISGDERI
ProtClustDB:PRK14950 BioCyc:DETH243164:GJNF-586-MONOMER
Uniprot:Q3Z8X2
Length = 559
Score = 450 (163.5 bits), Expect = 2.1e-41, P = 2.1e-41
Identities = 138/550 (25%), Positives = 255/550 (46%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+K+ P+T DLVGQ VA L NA+ ++ Y+F GP GTGKTS RI A+A+NC +
Sbjct: 8 RKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTN 67
Query: 473 E-QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
+ + +PC C C+S G S ++ E+ N + I +L + + + + Y++++ D
Sbjct: 68 QGKGEPCNTCPMCLSITEGSSMDVIEIDAASNTGVDDIRELKEKVQYAPALANYKVYIID 127
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+ LS + +A+ K ++ P RV+FIL ++ + + I+SRCQ+F F ++ +D+
Sbjct: 128 EVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLSDMSRK 187
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELVGLISD 650
L+ I+ EGI I+ +ALKLIA + GS RD E L+Q++ G IS+P VQ +G+ D
Sbjct: 188 LEKISQAEGINIEPEALKLIARSAGGSFRDGENLLQQIATTYGTEISLPQVQAALGISGD 247
Query: 651 EKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQLATVITDILA------GSYDFT 704
E+ N ++ L ++ G++ +L + I+ GS + T
Sbjct: 248 ERIKTLAENILKKDIKNGLQTLNAVVADGIDLKQFRRELLDYLRQIMLLNSGAEGSLELT 307
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKXXXXXXXXXXXXPDQQYV 764
D +K ++ + +E + +A+K S+ + ++ PD
Sbjct: 308 ADE--KKALQKVS-AITNLEGITKAIKAFSQLDFSSDTASSLSFELALVDASLNPD---T 361
Query: 765 LPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSGDFI 824
P++ + +P + A +K +AEI +K A+ S +
Sbjct: 362 APATIPPQAKLPAPKTEKPAVSNEPPQKEA-KAEIQDKTKNASEPAAASRTGAKESAPKL 420
Query: 825 DGNMRKGISLDRK-RHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGT 883
R I ++ K ++T +++ L G + ++ W +L++ +N
Sbjct: 421 T---RTAIPVEEKPKYTAPAPPKEEEKVLIGAGDVIEQ-----LKVSWKNILDQAPDNLK 472
Query: 884 KEF---LYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQILQA--FESVLGSPLTI 938
+ + R + VS V L+F+ K K E+ +++ + A + +G T+
Sbjct: 473 RSAAVAILRSAGVRPVSI-EKNVVTLSFKYKYHKDKIEELENRKVTAEIISNFVGRTCTL 531
Query: 939 EIRCESKIDT 948
C S+ +T
Sbjct: 532 V--CISEAET 539
>TIGR_CMR|BA_0019 [details] [associations]
symbol:BA_0019 "DNA polymerase III, gamma and tau subunits"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 RefSeq:NP_842590.1
RefSeq:YP_016623.1 RefSeq:YP_026309.1 ProteinModelPortal:Q81W18
IntAct:Q81W18 DNASU:1089003 EnsemblBacteria:EBBACT00000011079
EnsemblBacteria:EBBACT00000018474 EnsemblBacteria:EBBACT00000022003
GeneID:1089003 GeneID:2819477 GeneID:2849405 KEGG:ban:BA_0019
KEGG:bar:GBAA_0019 KEGG:bat:BAS0021 OMA:QTSHAYL
BioCyc:BANT260799:GJAJ-24-MONOMER BioCyc:BANT261594:GJ7F-25-MONOMER
Uniprot:Q81W18
Length = 562
Score = 440 (159.9 bits), Expect = 2.5e-40, P = 2.5e-40
Identities = 101/371 (27%), Positives = 191/371 (51%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S +R++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVTG 242
Query: 647 LISDEKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+S + ++ + +M G +P+ M D+L Y +
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLL--YQTSPQ 300
Query: 707 -RH--RRKFFRRQ-PLSKEEM--EKLRQALKTLSEAEKQLRMSNDKXXXXXXXXXXXXPD 760
H R Q + EEM E + + + TLS+ +++++ +N
Sbjct: 301 LEHMLERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC-- 358
Query: 761 QQYVLPSSSAD 771
QQ+++ ++ AD
Sbjct: 359 QQFMMQANGAD 369
>UNIPROTKB|Q97RF7 [details] [associations]
symbol:dnaX "DNA polymerase III, gamma and tau subunits"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE005672
GenomeReviews:AE005672_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 OMA:QTSHAYL PIR:G95099
RefSeq:NP_345352.1 ProteinModelPortal:Q97RF7
EnsemblBacteria:EBSTRT00000026555 GeneID:930817 KEGG:spn:SP_0865
PATRIC:19706123 Uniprot:Q97RF7
Length = 551
Score = 424 (154.3 bits), Expect = 2.9e-40, Sum P(2) = 2.9e-40
Identities = 98/337 (29%), Positives = 172/337 (51%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGAN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
Score = 43 (20.2 bits), Expect = 2.9e-40, Sum P(2) = 2.9e-40
Identities = 15/76 (19%), Positives = 30/76 (39%)
Query: 720 KEEMEKLRQALKTLSEAEKQLRMSNDKXXXXXXXXXXXXPDQQYVLPSSSADTSFSHSPL 779
++E+ +L+Q L + KQ+ + + Q +L + + + L
Sbjct: 371 RQEVARLKQELSNVGAVPKQVAPAPSRPATGKTVYRVDRNKVQSILQEAVENPDLARQNL 430
Query: 780 -DLENAGGRGMTRKGG 794
L+NA G + GG
Sbjct: 431 IRLQNAWGEVIESLGG 446
Score = 38 (18.4 bits), Expect = 9.6e-40, Sum P(2) = 9.6e-40
Identities = 15/74 (20%), Positives = 27/74 (36%)
Query: 1004 QAQQLHSESLEMGRTEIVEVPASPRETKDHAENRADYSKRASLSERKKLGEQSQCQSIVR 1063
+ +L E +G PA R R D +K S+ + Q+++R
Sbjct: 373 EVARLKQELSNVGAVPKQVAPAPSRPATGKTVYRVDRNKVQSILQEAVENPDLARQNLIR 432
Query: 1064 SKVSLAHVIQQAEG 1077
+ + VI+ G
Sbjct: 433 LQNAWGEVIESLGG 446
>TIGR_CMR|CHY_2675 [details] [associations]
symbol:CHY_2675 "putative DNA polymerase III, gamma/tau
subunits" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006260 "DNA replication" evidence=ISS] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_361464.1 ProteinModelPortal:Q3A8S0
STRING:Q3A8S0 GeneID:3728788 KEGG:chy:CHY_2675 PATRIC:21278371
OMA:DICHAIN BioCyc:CHYD246194:GJCN-2674-MONOMER Uniprot:Q3A8S0
Length = 511
Score = 417 (151.9 bits), Expect = 7.2e-38, P = 7.2e-38
Identities = 82/279 (29%), Positives = 155/279 (55%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P+TF ++VGQ + + L NAV +V Y+F GP GTGKT+ A++ A+A+NC+
Sbjct: 5 LYRKWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAVNCE 64
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ +PC C SCI + N+ E+ N + I +L +++ +Y++++
Sbjct: 65 HPVEGEPCNQCPSCIGINNQSLLNVFEIDAASNRGIDEIRELRESIKLVPAQGKYKVYII 124
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P V+FIL ++ + +P I+SRCQ+F F ++ I
Sbjct: 125 DEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRCQRFDFKRISTKTIWE 184
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
L+ IA KE ++ + +AL LIA S+G LRDA ++Q+ + +I+V +++G +S
Sbjct: 185 HLKNIAEKEKLQYEAEALHLIAEASEGGLRDALSLMDQILVFNPKITVEDTLKVLGFVSW 244
Query: 651 EKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQL 689
K + + + ++E G++ + Q+
Sbjct: 245 RKILELISAIRENNQLKIINEIAEVVERGLDVKLFVQQI 283
>UNIPROTKB|P09122 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0017111 GO:GO:0003887 EMBL:D26185
GO:GO:0009360 EMBL:X17014 EMBL:X06803 EMBL:X52144 PIR:I40469
PIR:S13786 RefSeq:NP_387900.2 ProteinModelPortal:P09122 SMR:P09122
IntAct:P09122 EnsemblBacteria:EBBACT00000003868 GeneID:936899
KEGG:bsu:BSU00190 PATRIC:18971499 GenoList:BSU00190 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563
BioCyc:BSUB:BSU00190-MONOMER SUPFAM:SSF48019 TIGRFAMs:TIGR02397
Uniprot:P09122
Length = 563
Score = 403 (146.9 bits), Expect = 3.6e-35, P = 3.6e-35
Identities = 83/291 (28%), Positives = 153/291 (52%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ + + L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C G ++ E+ N + I D+ D + + Y++
Sbjct: 63 NCEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P +FIL ++ +P IISRCQ+F F ++
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I E +++++ +L++IAS +DG +RDA L+Q +S G + V + G
Sbjct: 183 IVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLITG 242
Query: 647 LISDEKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+S + ++ L +++ G +P L+ + D+L
Sbjct: 243 AVSQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDML 293
>TIGR_CMR|GSU_0094 [details] [associations]
symbol:GSU_0094 "DNA polymerase III, gamma and tau
subunits" species:243231 "Geobacter sulfurreducens PCA" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 HOGENOM:HOG000083933
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HSSP:P28631
RefSeq:NP_951156.1 ProteinModelPortal:Q74GZ9 GeneID:2688299
KEGG:gsu:GSU0094 PATRIC:22022936 OMA:ELIDHFR ProtClustDB:PRK14965
BioCyc:GSUL243231:GH27-55-MONOMER Uniprot:Q74GZ9
Length = 579
Score = 405 (147.6 bits), Expect = 4.2e-35, P = 4.2e-35
Identities = 82/239 (34%), Positives = 140/239 (58%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P+TF DL GQ V++ L NA+ ++ ++F G G GKTS ARI A+ALNC+
Sbjct: 6 LARKWRPQTFSDLTGQEHVSRTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
P+PC C +C G S ++ E+ N + I +L +N+ +Y+IF+
Sbjct: 66 QGMSPEPCNVCPACTEITAGTSVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS ++++A+ K ++ P V FI ++ LP I+SRCQ+F F ++ A ++
Sbjct: 126 DEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSRCQRFDFRRIPLAKVVA 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLI 648
L++I +EGI I ++L ++A + DGS+RD+ L+Q L+ G+ ++ V L+G++
Sbjct: 186 RLRYIVDREGISISDESLAVVARKGDGSMRDSLSVLDQVLAFCGETVNDDDVVSLLGVV 244
>UNIPROTKB|Q2GDS0 [details] [associations]
symbol:NSE_0492 "Putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 390 (142.3 bits), Expect = 5.6e-35, P = 5.6e-35
Identities = 94/307 (30%), Positives = 157/307 (51%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L KY PR ++VGQ+ + + LS ++ R +V + GP+GTGKT+ AR +L C
Sbjct: 6 LANKYRPRLLDEIVGQDFLVKCLSASIARDEVAGAILLSGPYGTGKTTTARAVTLSLLCL 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ PC C+SCIS G +I E+ N E + L++ + S+Y+ ++
Sbjct: 66 NRTSALPCLKCDSCISILSGSHPDILEIDAASNTGVEDVRMLIEGALYKPLLSKYKSYIV 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS ++SA+ K+++ P+ V F L ++ L +P IISRCQ + ++ I
Sbjct: 126 DEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYRLSRLSRVVIAE 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELVGLI 648
L +A KE IEI +DA+K IA ++DGSLRDA LEQ++L +I+V +++ +GL+
Sbjct: 186 RLTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLEQVTLHPSEGKITVHVLRNKMGLV 245
Query: 649 SDEKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH 708
+ ++ L + G E L + +L +I + + +D
Sbjct: 246 DLSEVYMLLDSIIAGDCKTSLGKLNDLYSKGYEMLTIFMELVALINEKIQDKLT-AEDSS 304
Query: 709 RRKFFRR 715
+ FF R
Sbjct: 305 KSGFFCR 311
>TIGR_CMR|NSE_0492 [details] [associations]
symbol:NSE_0492 "putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 390 (142.3 bits), Expect = 5.6e-35, P = 5.6e-35
Identities = 94/307 (30%), Positives = 157/307 (51%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L KY PR ++VGQ+ + + LS ++ R +V + GP+GTGKT+ AR +L C
Sbjct: 6 LANKYRPRLLDEIVGQDFLVKCLSASIARDEVAGAILLSGPYGTGKTTTARAVTLSLLCL 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ PC C+SCIS G +I E+ N E + L++ + S+Y+ ++
Sbjct: 66 NRTSALPCLKCDSCISILSGSHPDILEIDAASNTGVEDVRMLIEGALYKPLLSKYKSYIV 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS ++SA+ K+++ P+ V F L ++ L +P IISRCQ + ++ I
Sbjct: 126 DEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYRLSRLSRVVIAE 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELVGLI 648
L +A KE IEI +DA+K IA ++DGSLRDA LEQ++L +I+V +++ +GL+
Sbjct: 186 RLTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLEQVTLHPSEGKITVHVLRNKMGLV 245
Query: 649 SDEKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH 708
+ ++ L + G E L + +L +I + + +D
Sbjct: 246 DLSEVYMLLDSIIAGDCKTSLGKLNDLYSKGYEMLTIFMELVALINEKIQDKLT-AEDSS 304
Query: 709 RRKFFRR 715
+ FF R
Sbjct: 305 KSGFFCR 311
>TIGR_CMR|CJE_1293 [details] [associations]
symbol:CJE_1293 "DNA polymerase III, gamma/tau subunits"
species:195099 "Campylobacter jejuni RM1221" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR012763
SMART:SM00382 GO:GO:0005524 GO:GO:0006260 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 TIGRFAMs:TIGR02397
RefSeq:YP_179281.1 ProteinModelPortal:Q5HTV4 STRING:Q5HTV4
GeneID:3231800 KEGG:cjr:CJE1293 PATRIC:20044382 OMA:EMMLFLK
ProtClustDB:PRK08451 BioCyc:CJEJ195099:GJC0-1319-MONOMER
Uniprot:Q5HTV4
Length = 509
Score = 382 (139.5 bits), Expect = 4.0e-34, P = 4.0e-34
Identities = 84/245 (34%), Positives = 138/245 (56%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q L KY P+TF +L+GQ V+ +L A+ ++ Y+F G G+GKTS ARIF+RAL
Sbjct: 3 QALAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALV 62
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
C+ PCG C C++ GK +I E+ N E I L++ + ++++IF
Sbjct: 63 CEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLEDIQALIEQTKYTPSMARFKIF 122
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ L+P + +A+ K ++ P V FIL ++ LP ++SR Q F F ++ ++I
Sbjct: 123 IIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRFKQIPQSEI 182
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-ISVPLVQELVGL 647
+ L+ I KE ++ +++ALK IA +GSLRD L+Q + Q IS+ +++G
Sbjct: 183 LNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLLDQAIIFCQNEISISKTTDMLGF 242
Query: 648 ISDEK 652
+ EK
Sbjct: 243 LDPEK 247
>TIGR_CMR|ECH_0014 [details] [associations]
symbol:ECH_0014 "DNA polymerase III, subunits gamma and
tau" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003583
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00278 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006260 GO:GO:0006281 GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 RefSeq:YP_506849.1
ProteinModelPortal:Q2GI84 STRING:Q2GI84 GeneID:3926952
KEGG:ech:ECH_0014 PATRIC:20575601 OMA:HPDVIEI ProtClustDB:PRK14964
BioCyc:ECHA205920:GJNR-14-MONOMER Uniprot:Q2GI84
Length = 505
Score = 368 (134.6 bits), Expect = 7.6e-32, P = 7.6e-32
Identities = 77/237 (32%), Positives = 133/237 (56%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
KY P F+DL+GQ ++ + L NA K+ + G G GKT+ ARI + LNC S
Sbjct: 19 KYRPSNFKDLIGQEVLVRVLHNAFHLNKIPESILLTGISGVGKTTAARIISMCLNCISGP 78
Query: 474 QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDC 533
PC C +CIS ++ E+ N E + +L+N S++++++ D+
Sbjct: 79 TSDPCNTCQNCISIKNFNHPDVIEIDAASNTSIEDVKVILENSRYMPISSKFKVYIIDEV 138
Query: 534 DTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQ 593
LS +++A+ KV++ V FIL ++ + +P IISRCQ+F F ++ ++ L+
Sbjct: 139 HMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQRFDFQRISTDKLVDHLK 198
Query: 594 WIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRI-SVPLVQELVGLIS 649
+A KE + D++++KLIA +DGS+R+A LEQ ++ +I S + +E++G +S
Sbjct: 199 VVAKKENVSFDEESIKLIAYNADGSIRNALSLLEQAAIYSNKILSENITKEMLGYVS 255
>TIGR_CMR|SPO_3550 [details] [associations]
symbol:SPO_3550 "DNA polymerase III, gamma and tau
subunits" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
ProtClustDB:PRK09111 InterPro:IPR022107 Pfam:PF12362
RefSeq:YP_168745.1 ProteinModelPortal:Q5LML3 GeneID:3193201
KEGG:sil:SPO3550 PATRIC:23380573 OMA:FTHLVTR Uniprot:Q5LML3
Length = 583
Score = 373 (136.4 bits), Expect = 2.9e-31, P = 2.9e-31
Identities = 85/299 (28%), Positives = 152/299 (50%)
Query: 400 LGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSC 459
+ D + +Q L +KY P TF DLVGQ+ + + L NA ++ ++ G GTGKT+
Sbjct: 1 MSDAPSTPYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTT 60
Query: 460 ARIFARALNCQSLEQ---P--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLD 514
ARI A+ +NC + P +PCG C C++ G+ ++ E+ I +++D
Sbjct: 61 ARIIAKGMNCIGPDGNGGPTTEPCGKCEHCVAIMEGRHVDVMEMDAASRTGVNDIREIID 120
Query: 515 NMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISR 574
++ ++Y+I++ D+ LS +++A+ K ++ P V FI ++ + +P ++SR
Sbjct: 121 SVRYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSR 180
Query: 575 CQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ 634
CQ+F +++ D+I ++ IA EG +I +DAL LI ++GS RDA L+Q G
Sbjct: 181 CQRFDLRRIEPEDMIALMRRIADAEGAQIAEDALALIVRAAEGSARDATSLLDQAISHGA 240
Query: 635 -RISVPLVQELVGLISDEKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQLATV 692
S V+ ++GL + + L G +P+A++ LA +
Sbjct: 241 GETSAEQVRAMLGLADRGRVLDLMDMILRGDAGAALTELGAQYAEGADPMAVLRDLAEI 299
>TIGR_CMR|CBU_0659 [details] [associations]
symbol:CBU_0659 "DNA polymerase III, gamma and tau
subunits" species:227377 "Coxiella burnetii RSA 493" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HOGENOM:HOG000083934 HSSP:P06710 RefSeq:NP_819689.1
ProteinModelPortal:Q83DN8 SMR:Q83DN8 GeneID:1208544
KEGG:cbu:CBU_0659 PATRIC:17929995 OMA:CETKLLA ProtClustDB:PRK14958
BioCyc:CBUR227377:GJ7S-653-MONOMER Uniprot:Q83DN8
Length = 509
Score = 362 (132.5 bits), Expect = 1.0e-30, P = 1.0e-30
Identities = 77/242 (31%), Positives = 134/242 (55%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
HQ L +K+ PR F++++GQ V +ALSNA+ ++ + Y+F G G GKT+ +RI A+ L
Sbjct: 3 HQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ PC C +C D G+ ++ EV E +LLDN+ + ++++
Sbjct: 63 NCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V FIL ++ LP ++SRC +F ++
Sbjct: 123 YLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I Q + +E +E + AL L+A ++GS+RDA L+Q G ++ + V+ ++G
Sbjct: 183 IAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTMLG 242
Query: 647 LI 648
I
Sbjct: 243 TI 244
>UNIPROTKB|P06710 [details] [associations]
symbol:dnaX species:83333 "Escherichia coli K-12"
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IDA] [GO:0043846 "DNA
polymerase III, clamp loader complex" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0030337 "DNA polymerase
processivity factor activity" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] UniProt:P06710 InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR021029 InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170
PRINTS:PR00300 SMART:SM00382 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 EMBL:U82664 EMBL:X04487
EMBL:M38777 GO:GO:0003887 eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 EMBL:X04275 PIR:A25549 RefSeq:NP_415003.1
RefSeq:YP_488761.1 PDB:1JR3 PDB:1NJF PDB:1NJG PDB:1XXH PDB:1XXI
PDB:2AYA PDB:3GLF PDB:3GLG PDB:3GLH PDB:3GLI PDBsum:1JR3
PDBsum:1NJF PDBsum:1NJG PDBsum:1XXH PDBsum:1XXI PDBsum:2AYA
PDBsum:3GLF PDBsum:3GLG PDBsum:3GLH PDBsum:3GLI
ProteinModelPortal:P06710 SMR:P06710 DIP:DIP-9464N IntAct:P06710
MINT:MINT-1222776 PRIDE:P06710 EnsemblBacteria:EBESCT00000003686
EnsemblBacteria:EBESCT00000015762 GeneID:12930852 GeneID:945105
KEGG:ecj:Y75_p0457 KEGG:eco:b0470 PATRIC:32116097 EchoBASE:EB0241
EcoGene:EG10245 HOGENOM:HOG000083934 OMA:VQLYYQT
ProtClustDB:PRK07994 BioCyc:EcoCyc:EG10245-MONOMER
BioCyc:EcoCyc:MONOMER0-2383 BioCyc:ECOL316407:JW0459-MONOMER
BindingDB:P06710 EvolutionaryTrace:P06710 Genevestigator:P06710
GO:GO:0043846 GO:GO:0030337 InterPro:IPR022001 Pfam:PF12168
Length = 643
Score = 370 (135.3 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 79/246 (32%), Positives = 138/246 (56%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+TF D+VGQ V AL+N + ++ Y+F G G GKTS AR+ A+ L
Sbjct: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ PCG C++C ++G+ ++ E+ E DLLDN+ + ++++
Sbjct: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V F+L ++ LP I+SRC +F +
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I + L+ I ++E I + AL+L+A ++GSLRDA +Q G ++S V ++G
Sbjct: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242
Query: 647 LISDEK 652
+ D++
Sbjct: 243 TLDDDQ 248
>UNIPROTKB|O83970 [details] [associations]
symbol:TP_1005 "DNA polymerase III, subunits gamma and tau
(DnaH)" species:243276 "Treponema pallidum subsp. pallidum str.
Nichols" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001270 InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 EMBL:AE000520 GenomeReviews:AE000520_GR
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HSSP:P06710 PIR:G71254 RefSeq:NP_219442.1 ProteinModelPortal:O83970
IntAct:O83970 GeneID:2610796 KEGG:tpa:TP1005 PATRIC:20532135
OMA:ANAYIFS ProtClustDB:PRK06647 Uniprot:O83970
Length = 572
Score = 367 (134.2 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 77/246 (31%), Positives = 133/246 (54%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q +Y P+ F+ ++GQ V L ++ KV Y+F GPHG GKTSCARI A+AL
Sbjct: 3 YQVTATRYRPQRFQHVLGQKFVVATLQKSLEENKVSPAYLFSGPHGCGKTSCARILAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC E +PCG C SC G + N+ E+ + + + + ++ ++Y++
Sbjct: 63 NCVQREASEPCGECPSCREIATGTNLNVIEIDGASHTGVGDVRQIKEEILFPPHGTRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
F+ D+ LS +++A+ K ++ P VVFI ++ + +P + SRCQ+F F +
Sbjct: 123 FIIDEVHMLSNSAFNALLKTIEEPPPYVVFIFATTEVHRIPATVKSRCQQFHFRLVDTQT 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ--LSLLGQRISVPLVQELV 645
++ L A + I ++ L IA S GS+RDA +Q +S G +++ +Q+ +
Sbjct: 183 LVCALAQAAQQMQIAVEDGVLSWIARESAGSMRDAYTLFDQTVVSCAGP-VTLENIQKKL 241
Query: 646 GLISDE 651
GL++D+
Sbjct: 242 GLMTDD 247
>TIGR_CMR|SO_2013 [details] [associations]
symbol:SO_2013 "DNA polymerase III, gamma and tau subunits"
species:211586 "Shewanella oneidensis MR-1" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HOGENOM:HOG000083934 HSSP:P06710 RefSeq:NP_717619.1
ProteinModelPortal:Q8EFG0 SMR:Q8EFG0 GeneID:1169765
KEGG:son:SO_2013 PATRIC:23523647 OMA:PKSGLEM ProtClustDB:PRK14949
Uniprot:Q8EFG0
Length = 1002
Score = 383 (139.9 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
Identities = 81/246 (32%), Positives = 143/246 (58%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P TF +VGQ+ V AL+NA+ ++++ Y+F G G GKTS AR+FA+ L
Sbjct: 3 YQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP-SQYR 526
NC++ PCG C SC+ +G+ ++ EV + +LLDN V RP +++
Sbjct: 63 NCETGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDN-VQYRPTRGRFK 121
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+++ D+ LS S++A+ K ++ P V F+L ++ LP ++SRC +F +
Sbjct: 122 VYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQQ 181
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA-EMTLEQLSLLGQRISVPLVQELV 645
+I LQ I ++E + + +AL L+A ++GS+RDA +T + ++ G + + VQ ++
Sbjct: 182 EIGTQLQHILTQEQLPFEHEALGLLAKSANGSMRDALSLTDQAIAFGGGTVMLNQVQSML 241
Query: 646 GLISDE 651
G I ++
Sbjct: 242 GSIDEQ 247
Score = 43 (20.2 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
Identities = 20/96 (20%), Positives = 39/96 (40%)
Query: 871 WLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQILQAFES 930
W +++ + G L + V P + + HL A+ +Q+ QA +
Sbjct: 864 WYKLMASLDIGGRVRQL-AVNSICQVQSNPLPLLLKPDQKHLA---AQVAIEQLEQALTA 919
Query: 931 VLGSPLTIEIRC------ESKIDTQAGFHLPLMLPA 960
LG+P +E+ E+ ++ + FH L+ A
Sbjct: 920 ALGAPRQVEVVIGTDPSRETPLELRKRFHQELLQQA 955
Score = 40 (19.1 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
Identities = 23/97 (23%), Positives = 39/97 (40%)
Query: 935 PLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVIDSESIIGNRGPMAGPIEISKRIPR 994
P+T I S + A HLPL P + + +E GN A PI S+++
Sbjct: 722 PITHSIIVPSTQQSAAAQHLPLD-PNDRPPWEDAPV-AECHHGN----AEPITTSRQVNE 775
Query: 995 DEGINGASSQAQQLHSESLEMGRTEIVEVPASPRETK 1031
+ + S+ LH+ L + ++ P T+
Sbjct: 776 ESHLRQESAA---LHAPLLAVEPVQVAPALTLPTNTQ 809
Score = 37 (18.1 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 764 VLPSSSADTSFSHSPLD 780
++PS+ + H PLD
Sbjct: 728 IVPSTQQSAAAQHLPLD 744
>UNIPROTKB|Q47XQ9 [details] [associations]
symbol:dnaX "DNA polymerase III, gamma/tau subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HOGENOM:HOG000083934
RefSeq:YP_270411.1 ProteinModelPortal:Q47XQ9 SMR:Q47XQ9
STRING:Q47XQ9 GeneID:3522410 KEGG:cps:CPS_3744 PATRIC:21470407
OMA:ICEFLAR BioCyc:CPSY167879:GI48-3766-MONOMER Uniprot:Q47XQ9
Length = 715
Score = 359 (131.4 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 75/240 (31%), Positives = 136/240 (56%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+ F+ L+GQ V L+NA+ ++++ Y+F G G GKT+ ARIFA++L
Sbjct: 3 YQVLARKWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAKSL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ KPCG C++CI D+G+ ++ E+ + ++LDN+ + ++++
Sbjct: 63 NCELGITDKPCGKCDACIDIDQGRFVDLLEIDAASKTKVDDTREILDNVQYAPSRGRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V FIL ++ LP ++SRC +F +
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQFHLKALTVKQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I L I S E + ++ L L+A + GS+RD+ +Q GQ I++ +Q+++G
Sbjct: 183 IEDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLSLTDQAIAQGQGHINLTNIQQMLG 242
>TIGR_CMR|CPS_3744 [details] [associations]
symbol:CPS_3744 "DNA polymerase III, gamma/tau subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HOGENOM:HOG000083934
RefSeq:YP_270411.1 ProteinModelPortal:Q47XQ9 SMR:Q47XQ9
STRING:Q47XQ9 GeneID:3522410 KEGG:cps:CPS_3744 PATRIC:21470407
OMA:ICEFLAR BioCyc:CPSY167879:GI48-3766-MONOMER Uniprot:Q47XQ9
Length = 715
Score = 359 (131.4 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 75/240 (31%), Positives = 136/240 (56%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+ F+ L+GQ V L+NA+ ++++ Y+F G G GKT+ ARIFA++L
Sbjct: 3 YQVLARKWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAKSL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ KPCG C++CI D+G+ ++ E+ + ++LDN+ + ++++
Sbjct: 63 NCELGITDKPCGKCDACIDIDQGRFVDLLEIDAASKTKVDDTREILDNVQYAPSRGRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V FIL ++ LP ++SRC +F +
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQFHLKALTVKQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I L I S E + ++ L L+A + GS+RD+ +Q GQ I++ +Q+++G
Sbjct: 183 IEDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLSLTDQAIAQGQGHINLTNIQQMLG 242
>UNIPROTKB|Q9KT51 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 OMA:VQLYYQT
ProtClustDB:PRK07994 InterPro:IPR022001 Pfam:PF12168 HSSP:P06710
PIR:H82246 RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 362 (132.5 bits), Expect = 2.8e-29, Sum P(2) = 2.8e-29
Identities = 88/312 (28%), Positives = 154/312 (49%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P F ++VGQ+ V AL NA+ + ++ Y+F G G GKT+ R+FA+ LNC+
Sbjct: 6 LARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ PCG C +C D+G+ ++ E+ E +LLDN+ ++++++
Sbjct: 66 TGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLI 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS S++A+ K ++ P V F+L ++ LP I+SRC +F + +I
Sbjct: 126 DEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISVENIQQ 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRI-SVPLVQELVGLIS 649
L + E I D AL L+A +DGS+RDA +Q LG + +V ++G +
Sbjct: 186 QLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIVAHMLGTLD 245
Query: 650 DEKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQLATVITDI-LAGSYDFTKDRH 708
+ + + + + GVE L+ QL+T + I + + T D+
Sbjct: 246 TDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMYQALPATLDKS 305
Query: 709 RRKFFRRQPLSK 720
+ R + L+K
Sbjct: 306 LPEASRIESLAK 317
Score = 45 (20.9 bits), Expect = 2.8e-29, Sum P(2) = 2.8e-29
Identities = 17/73 (23%), Positives = 29/73 (39%)
Query: 868 EEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQILQA 927
++ W ++ R++ E L L S + LT R EK + ++ QA
Sbjct: 571 QDAWSALVQRLETAKMVEQL----ALNSAFVRQGDQISLTLRPSHAHLHNEKAQQELEQA 626
Query: 928 FESVLGSPLTIEI 940
VLG ++ I
Sbjct: 627 LNHVLGEACSLNI 639
>TIGR_CMR|VC_1054 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 OMA:VQLYYQT ProtClustDB:PRK07994
InterPro:IPR022001 Pfam:PF12168 HSSP:P06710 PIR:H82246
RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 362 (132.5 bits), Expect = 2.8e-29, Sum P(2) = 2.8e-29
Identities = 88/312 (28%), Positives = 154/312 (49%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P F ++VGQ+ V AL NA+ + ++ Y+F G G GKT+ R+FA+ LNC+
Sbjct: 6 LARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ PCG C +C D+G+ ++ E+ E +LLDN+ ++++++
Sbjct: 66 TGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLI 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS S++A+ K ++ P V F+L ++ LP I+SRC +F + +I
Sbjct: 126 DEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISVENIQQ 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRI-SVPLVQELVGLIS 649
L + E I D AL L+A +DGS+RDA +Q LG + +V ++G +
Sbjct: 186 QLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIVAHMLGTLD 245
Query: 650 DEKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQLATVITDI-LAGSYDFTKDRH 708
+ + + + + GVE L+ QL+T + I + + T D+
Sbjct: 246 TDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMYQALPATLDKS 305
Query: 709 RRKFFRRQPLSK 720
+ R + L+K
Sbjct: 306 LPEASRIESLAK 317
Score = 45 (20.9 bits), Expect = 2.8e-29, Sum P(2) = 2.8e-29
Identities = 17/73 (23%), Positives = 29/73 (39%)
Query: 868 EEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQILQA 927
++ W ++ R++ E L L S + LT R EK + ++ QA
Sbjct: 571 QDAWSALVQRLETAKMVEQL----ALNSAFVRQGDQISLTLRPSHAHLHNEKAQQELEQA 626
Query: 928 FESVLGSPLTIEI 940
VLG ++ I
Sbjct: 627 LNHVLGEACSLNI 639
>TIGR_CMR|APH_1348 [details] [associations]
symbol:APH_1348 "DNA polymerase III, subunits gamma and
tau" species:212042 "Anaplasma phagocytophilum HZ" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 OMA:TCARIVS ProtClustDB:PRK14964
RefSeq:YP_505851.1 ProteinModelPortal:Q2GIF0 STRING:Q2GIF0
GeneID:3930792 KEGG:aph:APH_1348 PATRIC:20951496
BioCyc:APHA212042:GHPM-1348-MONOMER Uniprot:Q2GIF0
Length = 456
Score = 326 (119.8 bits), Expect = 5.5e-27, P = 5.5e-27
Identities = 83/301 (27%), Positives = 147/301 (48%)
Query: 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC 469
NL KY P F DLVGQ+++ + L N+ + + G G GKT+CARI + LNC
Sbjct: 2 NLALKYRPSNFDDLVGQDVLVRILRNSFSVGNLNTPLLMVGASGVGKTTCARIVSLCLNC 61
Query: 470 QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFV 529
++ PCG C +C S + ++ E+ N + I +L++ S++++++
Sbjct: 62 ENGPTSSPCGTCATCTSIKNSHNPDVVEMDAASNTSVDDIRVILESSNYLPVSSRFKVYI 121
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ LS +++A+ K ++ + FI+ ++ + +P + SRC + K+ +
Sbjct: 122 IDEVHMLSTSAFNALLKTLESPAQHAKFIMATTEVRKVPVTVASRCLRLDLGKLPIKQLY 181
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLI 648
L I++KE I D+ +L LIA S GS+R++ LEQ L +IS+ V+EL+G +
Sbjct: 182 DHLVKISAKENIAHDESSLMLIAENSSGSVRNSLFLLEQALIYSNNKISLQEVRELLGCV 241
Query: 649 SDEKXXXXXXXXXXXXTVNT-VKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR 707
D+K V + + R + P+ + + V+ + S D KD
Sbjct: 242 -DKKILEGIVRDIISSDVKSAIDGFRELCNAST-PVIIFEGMQKVVYGLCMYSID--KDF 297
Query: 708 H 708
H
Sbjct: 298 H 298
>UNIPROTKB|P63975 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:1773 "Mycobacterium tuberculosis" [GO:0040007 "growth"
evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842583 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
PIR:B70796 RefSeq:NP_218238.1 RefSeq:NP_338379.1
RefSeq:YP_006517213.1 ProteinModelPortal:P63975 SMR:P63975
PRIDE:P63975 EnsemblBacteria:EBMYCT00000002188
EnsemblBacteria:EBMYCT00000072154 GeneID:13317335 GeneID:885361
GeneID:922673 KEGG:mtc:MT3824 KEGG:mtu:Rv3721c KEGG:mtv:RVBD_3721c
PATRIC:18130168 TubercuList:Rv3721c OMA:IARVEPH
ProtClustDB:PRK14952 Uniprot:P63975
Length = 578
Score = 291 (107.5 bits), Expect = 4.0e-22, P = 4.0e-22
Identities = 68/221 (30%), Positives = 111/221 (50%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P +F ++VGQ V LS A+ ++ Y+F GP G GKTS ARI AR+LNC
Sbjct: 3 LYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62
Query: 471 SLEQPKPCGFCNSCIS--HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
PCG C SC+S + S ++ E+ + + +L D + S+YR+F
Sbjct: 63 QGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYRVF 122
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ ++ ++A+ K+V+ P ++FI ++ + + I SR + F + +
Sbjct: 123 IVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTM 182
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL 629
L I +EG+ +D L+ GS RD L+QL
Sbjct: 183 RALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL 223
>UNIPROTKB|Q0C591 [details] [associations]
symbol:dnaX "DNA polymerase III, subunits gamma and tau"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_759102.1 STRING:Q0C591 GeneID:4289739
KEGG:hne:HNE_0372 PATRIC:32213536 OMA:TCARIVS ProtClustDB:PRK09111
BioCyc:HNEP228405:GI69-416-MONOMER InterPro:IPR022107 Pfam:PF12362
Uniprot:Q0C591
Length = 578
Score = 288 (106.4 bits), Expect = 8.5e-22, P = 8.5e-22
Identities = 74/307 (24%), Positives = 145/307 (47%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L +KY PR F DL+GQ + + LSNA ++ ++ G G GKT+ AR+ AR L
Sbjct: 29 YEVLARKYRPRRFEDLIGQEAMVRTLSNAFETGRIAHGFMLTGVRGVGKTTTARLLARGL 88
Query: 468 NCQ---------------SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDL 512
N + S+ P C++ ++ + ++ E+ + DL
Sbjct: 89 NYEPKADAKGKKGKAAGPSIHLDPPGEHCDAIMA---SRHPDVLELDAASRTGVADMRDL 145
Query: 513 LDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIII 572
LD+ ++Y++++ D+ LS S++A+ K ++ P + FI ++ + +P ++
Sbjct: 146 LDSARYGPVSARYKVYIIDEVHMLSNASFNALLKTLEEPPPHLKFIFATTEIRKVPVTVL 205
Query: 573 SRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ---L 629
SRCQ+F ++ ++ L +A EG + ++AL LIA ++GS+RD L+Q
Sbjct: 206 SRCQRFDLKRLDSGELSRHLGNVAQSEGANVSEEALALIARAAEGSVRDGLSLLDQGIVQ 265
Query: 630 SLLGQRISVPLVQELVGLISDEKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQL 689
+ G+ +S V+ ++GL + + +R + G +P ++ +
Sbjct: 266 TTDGEEVSGAAVRAMLGLGDRARLLDAVEKAVGGDAKGALAEVREQVAGGADPAVILKDI 325
Query: 690 ATVITDI 696
+ DI
Sbjct: 326 LDIAADI 332
>WB|WBGene00004340 [details] [associations]
symbol:rfc-4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0045750 "positive regulation of S
phase of mitotic cell cycle" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006260
GO:GO:0000003 GO:GO:0000910 GO:GO:0017111 GO:GO:0045750 KO:K10755
eggNOG:COG0470 EMBL:FO080392 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 PIR:T16219 RefSeq:NP_498521.1
ProteinModelPortal:P53016 SMR:P53016 DIP:DIP-24293N IntAct:P53016
MINT:MINT-226482 STRING:P53016 PaxDb:P53016 EnsemblMetazoa:F31E3.3
GeneID:175976 KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976
WormBase:F31E3.3 InParanoid:P53016 OMA:CDLENNL NextBio:890574
Uniprot:P53016
Length = 334
Score = 216 (81.1 bits), Expect = 9.1e-15, P = 9.1e-15
Identities = 68/230 (29%), Positives = 117/230 (50%)
Query: 402 DNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCAR 461
DN+ + T+KY P+T D+ Q+ V L A+ R + L +FYGP GTGKTS A
Sbjct: 8 DNKRPKVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHL-LFYGPPGTGKTSAAL 66
Query: 462 IFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP 521
F R L +++ + N+ S +RG + +++ + +F S+ V
Sbjct: 67 AFCRQLFPKNIFHDRVLDL-NA--SDERGIAV-VRQ--KIQSFSKSSLGHSHREDVL--- 117
Query: 522 PSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFP 581
+ +I + D+ D ++ ++ +A+ +V++ + FIL+ + + L ++SRC KF F
Sbjct: 118 --KLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRF- 174
Query: 582 KMKDADI-IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLS 630
K A+I + L+ I EG + D LK + S+G LR A TL+ L+
Sbjct: 175 KSLPAEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLA 224
>UNIPROTKB|P53016 [details] [associations]
symbol:rfc-4 "Replication factor C subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0006260 GO:GO:0000003 GO:GO:0000910
GO:GO:0017111 GO:GO:0045750 KO:K10755 eggNOG:COG0470 EMBL:FO080392
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 PIR:T16219
RefSeq:NP_498521.1 ProteinModelPortal:P53016 SMR:P53016
DIP:DIP-24293N IntAct:P53016 MINT:MINT-226482 STRING:P53016
PaxDb:P53016 EnsemblMetazoa:F31E3.3 GeneID:175976
KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976 WormBase:F31E3.3
InParanoid:P53016 OMA:CDLENNL NextBio:890574 Uniprot:P53016
Length = 334
Score = 216 (81.1 bits), Expect = 9.1e-15, P = 9.1e-15
Identities = 68/230 (29%), Positives = 117/230 (50%)
Query: 402 DNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCAR 461
DN+ + T+KY P+T D+ Q+ V L A+ R + L +FYGP GTGKTS A
Sbjct: 8 DNKRPKVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHL-LFYGPPGTGKTSAAL 66
Query: 462 IFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP 521
F R L +++ + N+ S +RG + +++ + +F S+ V
Sbjct: 67 AFCRQLFPKNIFHDRVLDL-NA--SDERGIAV-VRQ--KIQSFSKSSLGHSHREDVL--- 117
Query: 522 PSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFP 581
+ +I + D+ D ++ ++ +A+ +V++ + FIL+ + + L ++SRC KF F
Sbjct: 118 --KLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRF- 174
Query: 582 KMKDADI-IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLS 630
K A+I + L+ I EG + D LK + S+G LR A TL+ L+
Sbjct: 175 KSLPAEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLA 224
>UNIPROTKB|P35249 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0048015 "phosphatidylinositol-mediated
signaling" evidence=NAS] [GO:0006260 "DNA replication"
evidence=NAS;TAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677 EMBL:CH471052
GO:GO:0017111 GO:GO:0048015 GO:GO:0000084 KO:K10755 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 EMBL:M87339 EMBL:AF538718 EMBL:BT006987
EMBL:CR536561 EMBL:BC017452 EMBL:BC024022 IPI:IPI00017381
PIR:A45253 RefSeq:NP_002907.1 RefSeq:NP_853551.1 UniGene:Hs.732098
ProteinModelPortal:P35249 SMR:P35249 DIP:DIP-24267N IntAct:P35249
MINT:MINT-1485723 STRING:P35249 PhosphoSite:P35249 DMDM:1703052
PaxDb:P35249 PeptideAtlas:P35249 PRIDE:P35249 DNASU:5984
Ensembl:ENST00000296273 Ensembl:ENST00000392481 GeneID:5984
KEGG:hsa:5984 UCSC:uc003fqz.3 GeneCards:GC03M186507 HGNC:HGNC:9972
HPA:CAB004557 MIM:102577 neXtProt:NX_P35249 PharmGKB:PA34341
InParanoid:P35249 OMA:QQLSQNC PhylomeDB:P35249 ChiTaRS:RFC4
GenomeRNAi:5984 NextBio:23297 ArrayExpress:P35249 Bgee:P35249
CleanEx:HS_RFC4 Genevestigator:P35249 GermOnline:ENSG00000163918
Uniprot:P35249
Length = 363
Score = 206 (77.6 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 70/297 (23%), Positives = 137/297 (46%)
Query: 401 GDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCA 460
G+N+ + +KY P+ ++ Q V L ++ + L +FYGP GTGKTS
Sbjct: 30 GENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNL-LFYGPPGTGKTSTI 88
Query: 461 RIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR 520
AR L L + + N+ S +RG + ++E V NF + L + + +
Sbjct: 89 LAAARELFGPELFRLRVLEL-NA--SDERG-IQVVRE--KVKNF---AQLTVSGSRSDGK 139
Query: 521 PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFF 580
P ++I + D+ D+++ + +A+ + +++ + F L+ + + + + SRC KF F
Sbjct: 140 PCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRF 199
Query: 581 PKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRISV 638
+ D L IA KE ++I + + + S+G LR A L+ + L G+ I+
Sbjct: 200 KPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITE 259
Query: 639 PLVQELVGLISDEKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQLATVITD 695
++ ++ G+I EK ++ +++ G L++QL V+ +
Sbjct: 260 KVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVE 316
>UNIPROTKB|F1NIY0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917
EMBL:AADN02020726 IPI:IPI00574772 Ensembl:ENSGALT00000014162
ArrayExpress:F1NIY0 Uniprot:F1NIY0
Length = 359
Score = 200 (75.5 bits), Expect = 9.8e-13, P = 9.8e-13
Identities = 79/324 (24%), Positives = 147/324 (45%)
Query: 389 ASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVF 448
A++ RS + G+ + + +KY P+ ++ Q+ V L ++ + L +F
Sbjct: 17 AAKERSAAGSS-GEGKKLKPVPWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNL-LF 74
Query: 449 YGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNF-DFE 507
YGP GTGKTS AR L L + + N+ S +RG + I+E V F
Sbjct: 75 YGPPGTGKTSTILAAARELFGPELFRQRVLEL-NA--SDERG-IQVIRE--KVKAFAQLT 128
Query: 508 SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDAL 567
+ D V PP ++I + D+ D+++ + +A+ + +++ + F L+ + + +
Sbjct: 129 ASGSRADGKVC--PP--FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRI 184
Query: 568 PHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLE 627
+ SRC KF F + D L ++ KE ++I +A+ + SDG LR A L+
Sbjct: 185 IEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQ 244
Query: 628 QLSLL--GQRISVPLVQELVGLISDEKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLAL 685
+ L G+ I+ V E+ G+I E + + L + + +
Sbjct: 245 SATRLMGGKEITEKTVTEIAGVIPRETIDGLLSACSS----GSFEKLETVAKNLINEGYA 300
Query: 686 MSQLATVITDILAGSYDFTKDRHR 709
++QL + DI+ S DF+ D+ +
Sbjct: 301 VAQLVNQLHDIVVESEDFS-DKQK 323
>UNIPROTKB|F1NEW1 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:AADN02020726 IPI:IPI00819051 PRIDE:F1NEW1
Ensembl:ENSGALT00000039711 ArrayExpress:F1NEW1 Uniprot:F1NEW1
Length = 362
Score = 200 (75.5 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 79/324 (24%), Positives = 147/324 (45%)
Query: 389 ASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVF 448
A++ RS + G+ + + +KY P+ ++ Q+ V L ++ + L +F
Sbjct: 17 AAKERSAAGSS-GEGKKLKPVPWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNL-LF 74
Query: 449 YGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNF-DFE 507
YGP GTGKTS AR L L + + N+ S +RG + I+E V F
Sbjct: 75 YGPPGTGKTSTILAAARELFGPELFRQRVLEL-NA--SDERG-IQVIRE--KVKAFAQLT 128
Query: 508 SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDAL 567
+ D V PP ++I + D+ D+++ + +A+ + +++ + F L+ + + +
Sbjct: 129 ASGSRADGKVC--PP--FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRI 184
Query: 568 PHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLE 627
+ SRC KF F + D L ++ KE ++I +A+ + SDG LR A L+
Sbjct: 185 IEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQ 244
Query: 628 QLSLL--GQRISVPLVQELVGLISDEKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLAL 685
+ L G+ I+ V E+ G+I E + + L + + +
Sbjct: 245 SATRLMGGKEITEKTVTEIAGVIPRETIDGLLSACSS----GSFEKLETVAKNLINEGYA 300
Query: 686 MSQLATVITDILAGSYDFTKDRHR 709
++QL + DI+ S DF+ D+ +
Sbjct: 301 VAQLVNQLHDIVVESEDFS-DKQK 323
>UNIPROTKB|C9JZI1 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 EMBL:AC112907 Pfam:PF08542 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925945
ProteinModelPortal:C9JZI1 SMR:C9JZI1 STRING:C9JZI1
Ensembl:ENST00000433496 ArrayExpress:C9JZI1 Bgee:C9JZI1
Uniprot:C9JZI1
Length = 336
Score = 198 (74.8 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 64/253 (25%), Positives = 122/253 (48%)
Query: 401 GDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCA 460
G+N+ + +KY P+ ++ Q V L ++ + L +FYGP GTGKTS
Sbjct: 30 GENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNL-LFYGPPGTGKTSTI 88
Query: 461 RIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR 520
AR L L + + N+ S +RG + ++E V NF + L + + +
Sbjct: 89 LAAARELFGPELFRLRVLEL-NA--SDERG-IQVVRE--KVKNF---AQLTVSGSRSDGK 139
Query: 521 PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFF 580
P ++I + D+ D+++ + +A+ + +++ + F L+ + + + + SRC KF F
Sbjct: 140 PCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRF 199
Query: 581 PKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRISV 638
+ D L IA KE ++I + + + S+G LR A L+ + L G+ I+
Sbjct: 200 KPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITE 259
Query: 639 PLVQELVGLISDE 651
++ ++ G + DE
Sbjct: 260 KVITDIAGDLIDE 272
>UNIPROTKB|F1SFI3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:CU633961 Ensembl:ENSSSCT00000012916 Uniprot:F1SFI3
Length = 366
Score = 198 (74.8 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 62/262 (23%), Positives = 126/262 (48%)
Query: 392 GRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGP 451
G + ++ G+N+ + +KY P+ ++ Q V L ++ + L +FYGP
Sbjct: 21 GVAATARSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNL-LFYGP 79
Query: 452 HGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILD 511
GTGKTS AR L L + + N+ S +RG + ++E V NF ++
Sbjct: 80 PGTGKTSTILAAARELFGPELFRLRVLEL-NA--SDERG-IQVVRE--KVKNFAQLTVSG 133
Query: 512 LLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHII 571
++ +P ++I + D+ D+++ + +A+ + +++ + F L+ + + + +
Sbjct: 134 SRSE-ISGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPL 192
Query: 572 ISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL 631
SRC KF F + D L IA KE ++I + + + S+G LR A L+ +
Sbjct: 193 TSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISDEGIAYLVKVSEGDLRKAITFLQSATR 252
Query: 632 L--GQRISVPLVQELVGLISDE 651
L G+ ++ ++ ++ G++ E
Sbjct: 253 LTGGKEVTEKMITDIAGVVPTE 274
>POMBASE|SPAC23D3.02 [details] [associations]
symbol:rfc2 "DNA replication factor C complex subunit
Rfc2" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006270 "DNA replication initiation" evidence=IMP] [GO:0031389
"Rad17 RFC-like complex" evidence=TAS] [GO:0031390 "Ctf18 RFC-like
complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like complex"
evidence=IDA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IMP] [GO:0043596 "nuclear replication fork" evidence=IC]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC23D3.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0000790 GO:GO:0006270 GO:GO:0043596
GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0033314 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 PIR:T38278 RefSeq:NP_594540.1
ProteinModelPortal:Q09843 SMR:Q09843 STRING:Q09843
EnsemblFungi:SPAC23D3.02.1 GeneID:2541908 KEGG:spo:SPAC23D3.02
HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4ZCXDF NextBio:20802995
Uniprot:Q09843
Length = 340
Score = 195 (73.7 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 66/282 (23%), Positives = 131/282 (46%)
Query: 415 YMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQ 474
Y P+T + Q Q L ++ + + +FYG GTGKTS +R L L +
Sbjct: 25 YRPKTLDQVSSQESTVQVLKKTLLSNNLPHM-LFYGSPGTGKTSTILALSRELFGPQLMK 83
Query: 475 PKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCD 534
+ N+ S +RG S I+E V +F ++ + +D PP ++I + D+ D
Sbjct: 84 SRVLEL-NA--SDERGISI-IRE--KVKSFAKTTVTNKVDGYPC--PP--FKIIILDEAD 133
Query: 535 TLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQW 594
+++ D+ +A+ + ++ R F L+ + + + + SRC K+ F + + +++ L++
Sbjct: 134 SMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEF 193
Query: 595 IASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRISVPLVQELVGLISDEK 652
IA+ + + ++ + + S G +R A L+ + L G I++ V+EL G +
Sbjct: 194 IAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEELAGAVP-YN 252
Query: 653 XXXXXXXXXXXXTVNTVKNL-RVIMETGVEPLALMSQLATVI 693
V+ ++ L R + G ++SQL V+
Sbjct: 253 IIRSLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVL 294
>ZFIN|ZDB-GENE-040907-1 [details] [associations]
symbol:rfc5 "replication factor C (activator 1) 5"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0060041 "retina development in camera-type eye" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-040907-1 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0060041 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
HOVERGEN:HBG002053 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:CU207223 EMBL:AY648755 IPI:IPI00505315
RefSeq:NP_001003862.1 UniGene:Dr.151058 SMR:Q6DRK4 STRING:Q6DRK4
Ensembl:ENSDART00000051670 GeneID:445385 KEGG:dre:445385
InParanoid:Q6DRK4 NextBio:20832089 Uniprot:Q6DRK4
Length = 334
Score = 154 (59.3 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 49/201 (24%), Positives = 89/201 (44%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV-GPVGNFD 505
+FYGP GTGKTS AR L K F + + + R I V GP+
Sbjct: 51 LFYGPPGTGKTSTILACARQLY-------KDKEFNSMVLELNASDDRGIDVVRGPI--LS 101
Query: 506 FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565
F S + +++ + D+ D ++ D+ +A+ +V+++ F L+ + L
Sbjct: 102 FASTRTIFKK--------GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLS 153
Query: 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMT 625
+ + SRC +F F + +I L+ + +E I+I D +K I + S G +R +
Sbjct: 154 KIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQESIDITPDGMKAIVTLSTGDMRRSLNI 213
Query: 626 LEQLSLLGQRISVPLVQELVG 646
L+ + +++ V G
Sbjct: 214 LQSTHMAYGKVTEETVYTCTG 234
Score = 89 (36.4 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+KY P+T DL+ + + + ++ L +FYGP GTGKTS AR L
Sbjct: 18 EKYRPQTLDDLISHQDILSTIQKFISEDRLPHL-LFYGPPGTGKTSTILACARQL 71
>DICTYBASE|DDB_G0286027 [details] [associations]
symbol:rfc4 "replication factor C subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0286027 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000085 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 RefSeq:XP_637900.1 HSSP:O28219
ProteinModelPortal:Q54MD4 STRING:Q54MD4 EnsemblProtists:DDB0232233
GeneID:8625410 KEGG:ddi:DDB_G0286027 OMA:SANDIVQ
ProtClustDB:CLSZ2430137 Uniprot:Q54MD4
Length = 347
Score = 195 (73.7 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 60/235 (25%), Positives = 111/235 (47%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
KY P+T D+ Q V AL ++ + L +FYGP GTGKTS I A A++ E
Sbjct: 15 KYRPKTVDDVSYQEDVISALKKSLNTGNLPHL-LFYGPPGTGKTST--ILAIAMDIYGPE 71
Query: 474 QPKPCGFCNSCISHDRGKSRNIKEVGP-VGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
K + + R I+ V + NF ++ TS P + +++ + D+
Sbjct: 72 LMK-----QRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTG--TSNPGATFKLIILDE 124
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
D+++ D+ +A+ + ++ + F L+ + + + + SRC KF F + I L
Sbjct: 125 ADSMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERL 184
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++I+ +EGI+ ++ + I S+G +R A L+ +IS ++ + G
Sbjct: 185 KFISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAG 239
>GENEDB_PFALCIPARUM|PFB0840w [details] [associations]
symbol:PFB0840w "replication factor C, subunit
2" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 194 (73.4 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 65/238 (27%), Positives = 111/238 (46%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P+ D+V QN L V + + L +F+GP GTGKTS A L +
Sbjct: 8 EKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHL-IFHGPPGTGKTSAINALAHELFGKEN 66
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ N+ S DRG + ++E + + SI + T +++ V D+
Sbjct: 67 ISERVLEL-NA--SDDRGINV-VRE--KIKAYTRISISKNKIHSETKEVLPSWKLVVLDE 120
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
D ++ D+ SA+ ++++ FIL+ + + + I SRC + F + L
Sbjct: 121 ADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKL 180
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
+I E I+I DAL+ I ++G LR A L+ S + +I++ V ++ GL SD
Sbjct: 181 LYICQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDVSGLPSD 238
>UNIPROTKB|O96260 [details] [associations]
symbol:PFB0840w "Replication factor C, subunit 2"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 194 (73.4 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 65/238 (27%), Positives = 111/238 (46%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P+ D+V QN L V + + L +F+GP GTGKTS A L +
Sbjct: 8 EKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHL-IFHGPPGTGKTSAINALAHELFGKEN 66
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ N+ S DRG + ++E + + SI + T +++ V D+
Sbjct: 67 ISERVLEL-NA--SDDRGINV-VRE--KIKAYTRISISKNKIHSETKEVLPSWKLVVLDE 120
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
D ++ D+ SA+ ++++ FIL+ + + + I SRC + F + L
Sbjct: 121 ADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKL 180
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
+I E I+I DAL+ I ++G LR A L+ S + +I++ V ++ GL SD
Sbjct: 181 LYICQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDVSGLPSD 238
>UNIPROTKB|Q29RS9 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917
OMA:QQLSQNC EMBL:DAAA02001847 EMBL:DAAA02001846 EMBL:BC114041
IPI:IPI00728867 RefSeq:NP_001039359.1 UniGene:Bt.102331
STRING:Q29RS9 Ensembl:ENSBTAT00000045810 GeneID:504637
KEGG:bta:504637 NextBio:20866768 Uniprot:Q29RS9
Length = 337
Score = 192 (72.6 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 64/262 (24%), Positives = 127/262 (48%)
Query: 392 GRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGP 451
G + ++ G+N+ + +KY P+ ++ Q V L ++ + L +FYGP
Sbjct: 21 GVTATARSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNL-LFYGP 79
Query: 452 HGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILD 511
GTGKTS AR L L + + N+ S +RG + ++E V NF + L
Sbjct: 80 PGTGKTSTILAAARELFGPELFRLRVLEL-NA--SDERG-IQVVRE--KVKNF---AQLT 130
Query: 512 LLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHII 571
+ + +P ++I + D+ D+++ + +A+ + +++ + F L+ + + + +
Sbjct: 131 VSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPL 190
Query: 572 ISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL 631
SRC KF F + D L IA KE ++I + + + S+G LR A L+ +
Sbjct: 191 TSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRKAITFLQSATR 250
Query: 632 L--GQRISVPLVQELVG-LISD 650
L G+ ++ ++ ++ G LI++
Sbjct: 251 LTGGKEVTEKVITDIAGDLINE 272
>UNIPROTKB|E2R2M6 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5984 OMA:ICFRGTF
GeneTree:ENSGT00550000074917 EMBL:AAEX03017297 RefSeq:XP_535837.1
Ensembl:ENSCAFT00000021708 GeneID:478667 KEGG:cfa:478667
NextBio:20853970 Uniprot:E2R2M6
Length = 363
Score = 193 (73.0 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 64/263 (24%), Positives = 125/263 (47%)
Query: 388 LASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYV 447
L G + + G+N+ + +KY P+ ++ Q V L ++ + L +
Sbjct: 16 LKDRGIAATAGSSGENKKTKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNL-L 74
Query: 448 FYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFE 507
FYGP GTGKTS AR L L + + N+ S +RG + ++E V NF
Sbjct: 75 FYGPPGTGKTSTILAAARELFGPELFRLRVLEL-NA--SDERG-IQVVRE--KVKNF--- 125
Query: 508 SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDAL 567
+ L + + +P ++I + D+ D+++ + +A+ + +++ + F L+ + + +
Sbjct: 126 AQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRI 185
Query: 568 PHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLE 627
+ SRC KF F + D L IA KE +++ + + + S+G LR A L+
Sbjct: 186 IEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKVSNEGIAYLVKVSEGDLRKAITFLQ 245
Query: 628 QLSLL--GQRISVPLVQELVGLI 648
+ L G+ I+ ++ ++ G+I
Sbjct: 246 SATRLTGGKEITEKVITDIAGVI 268
>FB|FBgn0030871 [details] [associations]
symbol:CG8142 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0031122 "cytoplasmic microtubule organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0003677
GO:GO:0006260 EMBL:AE014298 GO:GO:0046331 GO:GO:0017111
GO:GO:0031122 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
GeneTree:ENSGT00550000074917 HSSP:Q8U4J3 EMBL:AY069598
RefSeq:NP_573245.1 UniGene:Dm.2050 SMR:Q9VX15 IntAct:Q9VX15
MINT:MINT-847740 STRING:Q9VX15 EnsemblMetazoa:FBtr0074472
GeneID:32763 KEGG:dme:Dmel_CG8142 UCSC:CG8142-RA
FlyBase:FBgn0030871 InParanoid:Q9VX15 OMA:VGQMMEQ OrthoDB:EOG4Q2BXJ
GenomeRNAi:32763 NextBio:780237 Uniprot:Q9VX15
Length = 353
Score = 192 (72.6 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 61/215 (28%), Positives = 100/215 (46%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY PR D+V Q+ V L V + + + YGP GTGKTS +R +
Sbjct: 34 EKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNM-LLYGPPGTGKTSTILAASRQIFGDMF 92
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ S +RG N+ + NF S L +P ++I + D+
Sbjct: 93 KDR----ILELNASDERGI--NVVRT-KIKNF---SQLSASSVRPDGKPCPPFKIIILDE 142
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
D+++ + SA+ + +++ R F L+ + + + I SRC KF F + + +I L
Sbjct: 143 ADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRL 202
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLE 627
++I EG++I+ DA K I S G LR A TL+
Sbjct: 203 KYICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQ 237
>RGD|1310142 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1310142
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755
eggNOG:COG0470 EMBL:CH473999 SUPFAM:SSF48019 HOVERGEN:HBG002053
Pfam:PF08542 CTD:5984 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 OrthoDB:EOG4Q58PN EMBL:BC168166
IPI:IPI00370513 RefSeq:NP_001099339.1 UniGene:Rn.17046
STRING:B4F778 Ensembl:ENSRNOT00000002487 GeneID:288003
KEGG:rno:288003 UCSC:RGD:1310142 OMA:INIPHED NextBio:627397
Genevestigator:B4F778 Uniprot:B4F778
Length = 364
Score = 189 (71.6 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 65/259 (25%), Positives = 123/259 (47%)
Query: 392 GRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGP 451
G S + G+ + + +KY P+ ++ Q V L ++ + L +FYGP
Sbjct: 21 GISSSAGSSGETKKVKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNL-LFYGP 79
Query: 452 HGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILD 511
GTGKTS AR L L + + N+ S +RG + ++E V NF + L
Sbjct: 80 PGTGKTSTILAAARELFGPELFRLRVLEL-NA--SDERG-IQVVRE--KVKNF---AQLT 130
Query: 512 LLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHII 571
+ + +P ++I + D+ D+++ + +A+ + +++ + F L+ + + + +
Sbjct: 131 VSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPL 190
Query: 572 ISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL 631
SRC KF F + D L IA KE ++I + + + S+G LR A L+ +
Sbjct: 191 TSRCSKFRFKPLSDKIQQKRLLDIAEKENVKIGDEEIAYLVRISEGDLRKAITFLQSATR 250
Query: 632 L--GQRISVPLVQELVGLI 648
L G+ IS ++ ++ G+I
Sbjct: 251 LTGGKEISEDVITDIAGVI 269
>SGD|S000003829 [details] [associations]
symbol:RFC2 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031391 "Elg1 RFC-like complex"
evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0006272 "leading strand elongation" evidence=IDA] [GO:0017076
"purine nucleotide binding" evidence=ISS] [GO:0000075 "cell cycle
checkpoint" evidence=IMP] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0007062 "sister chromatid cohesion"
evidence=IPI] [GO:0003689 "DNA clamp loader activity" evidence=IDA]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000003829
GO:GO:0005524 GO:GO:0005634 EMBL:BK006943 GO:GO:0003677
GO:GO:0006298 EMBL:L47993 GO:GO:0017111 GO:GO:0017076 KO:K06883
RefSeq:NP_012602.3 GeneID:853531 KEGG:sce:YJR068W KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
RefSeq:NP_012606.3 GeneID:853535 KEGG:sce:YJR072C PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224154
OrthoDB:EOG4ZCXDF EMBL:D28499 EMBL:U26028 EMBL:Z49568 EMBL:AY557920
PIR:S45531 ProteinModelPortal:P40348 SMR:P40348 DIP:DIP-2528N
IntAct:P40348 MINT:MINT-480404 STRING:P40348 PaxDb:P40348
PeptideAtlas:P40348 EnsemblFungi:YJR068W CYGD:YJR068w
GeneTree:ENSGT00550000074917 OMA:SMTADAQ EvolutionaryTrace:P40348
NextBio:974230 Genevestigator:P40348 GermOnline:YJR068W
Uniprot:P40348
Length = 353
Score = 188 (71.2 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 68/287 (23%), Positives = 129/287 (44%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q +KY P+ ++ Q+ L + + + +FYGP GTGKTS + L
Sbjct: 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHM-LFYGPPGTGKTSTILALTKELY 83
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
L + + N+ S +RG S ++E V NF ++ + + + P Y+I
Sbjct: 84 GPDLMKSRILEL-NA--SDERGISI-VRE--KVKNFARLTVSKPSKHDLENYPCPPYKII 137
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ D+++ D+ SA+ + ++ F L+ + + + + SRC KF F + ++
Sbjct: 138 ILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNA 197
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLS----LLG--QRISVPLVQ 642
I L++I+ +E ++ D L+ I S G LR L+ S LG + I+ V+
Sbjct: 198 IDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVE 257
Query: 643 ELVGLISDEKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQL 689
EL G++ + K + M++G ++++QL
Sbjct: 258 ELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQL 304
>CGD|CAL0002015 [details] [associations]
symbol:RFC2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1
RFC-like complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0002015
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000024 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224154 RefSeq:XP_720328.1
RefSeq:XP_888712.1 ProteinModelPortal:Q5AFN3 SMR:Q5AFN3
STRING:Q5AFN3 GeneID:3637939 GeneID:3703993 KEGG:cal:CaO19.7035
KEGG:cal:CaO19_7035 Uniprot:Q5AFN3
Length = 363
Score = 186 (70.5 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 59/247 (23%), Positives = 116/247 (46%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H +KY P++ D+ Q + L+ + + + +FYGP GTGKTS A+ L
Sbjct: 23 HTPWVEKYRPKSLNDVSSQEHTIKVLTQTIKSGNLPHM-LFYGPPGTGKTSTILALAKEL 81
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
+L + + N+ S +RG S ++E + NF +I + + + P Y+I
Sbjct: 82 YGPNLYKSRVLEL-NA--SDERGISI-VRE--KIKNFARLTISNPTKEDLQNYPCPPYKI 135
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
+ D+ D+++ D+ SA+ + ++ F+L+ + + + I SRC KF F + + +
Sbjct: 136 IILDEADSMTNDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNEN 195
Query: 588 IIYTLQWIASKEGIEIDKD-----ALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQ 642
L++I +E + + + ++ + S G LR A L+ + L + + Q
Sbjct: 196 AQLRLKYIGQQENLRFESENNEHQVIQELLKISGGDLRKAITYLQSAAKLSETFDINHHQ 255
Query: 643 ELVGLIS 649
L+ + S
Sbjct: 256 SLITIQS 262
Score = 47 (21.6 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 859 VSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVS 897
++ S+N I +I+ + +R NNGT E + L+ +S
Sbjct: 323 INSLSKNKISQIFFQS-DRKLNNGTDEHIQLLNVLLQIS 360
>RGD|1309280 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1309280
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
GeneTree:ENSGT00550000075072 OMA:ILACARQ IPI:IPI00870052
Ensembl:ENSRNOT00000001498 UCSC:RGD:1309280 ArrayExpress:F1LQL0
Uniprot:F1LQL0
Length = 339
Score = 148 (57.2 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 47/201 (23%), Positives = 93/201 (46%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV-GPVGNFD 505
+ YGP GTGKTS I A A + L + K G + + + R I V GP+
Sbjct: 56 LLYGPPGTGKTST--ILACA---KQLYKDKEFG--SMVLELNASDDRGIDIVRGPI--LS 106
Query: 506 FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565
F S + +++ + D+ D ++ D+ +A+ +V+++ F L+ + L
Sbjct: 107 FASTRTIFKR--------GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLS 158
Query: 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMT 625
+ + SRC +F F + ++ L+ + +E ++I +D +K + + S G +R A
Sbjct: 159 KIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNI 218
Query: 626 LEQLSLLGQRISVPLVQELVG 646
L+ ++ +++ V G
Sbjct: 219 LQSTNMAFGKVTEETVYTCTG 239
Score = 87 (35.7 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 404 RNGRHQNL--TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCAR 461
R R +NL +KY P+T DL+ + + + ++ L + YGP GTGKTS
Sbjct: 12 RAARARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHL-LLYGPPGTGKTSTIL 70
Query: 462 IFARAL 467
A+ L
Sbjct: 71 ACAKQL 76
>ASPGD|ASPL0000039105 [details] [associations]
symbol:AN2969 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IEA] [GO:0006272 "leading strand
elongation" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0031389
"Rad17 RFC-like complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:BN001306 GO:GO:0017111 SUPFAM:SSF48019 Pfam:PF08542
OMA:QQLSQNC EnsemblFungi:CADANIAT00010111 Uniprot:C8VJ05
Length = 387
Score = 188 (71.2 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 59/232 (25%), Positives = 104/232 (44%)
Query: 401 GDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCA 460
G R Q +KY P+T D+ Q+ + L + + + +FYGP GTGKTS
Sbjct: 26 GKEEQSRLQPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHM-LFYGPPGTGKTSTI 84
Query: 461 RIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR 520
A++L +L + + N+ S +RG ++V L
Sbjct: 85 LALAKSLFGPALYRSRILEL-NA--SDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKY 141
Query: 521 PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFF 580
P ++I + D+ D+++ D+ SA+ + +++ R F LV + + + + SRC KF F
Sbjct: 142 PCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRF 201
Query: 581 PKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL 632
+ ++ L IA E + ++ + + S SDG LR A L+ + L
Sbjct: 202 KPLDNSAAGDRLAQIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQSAARL 253
>MGI|MGI:2146571 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:2146571
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 EMBL:AK146954
EMBL:BC003335 IPI:IPI00319874 RefSeq:NP_663455.1 UniGene:Mm.386835
ProteinModelPortal:Q99J62 SMR:Q99J62 IntAct:Q99J62 STRING:Q99J62
PhosphoSite:Q99J62 PaxDb:Q99J62 PRIDE:Q99J62
Ensembl:ENSMUST00000023598 GeneID:106344 KEGG:mmu:106344
UCSC:uc007yth.1 OrthoDB:EOG4Q58PN NextBio:358165 Bgee:Q99J62
CleanEx:MM_RFC4 Genevestigator:Q99J62 GermOnline:ENSMUSG00000022881
Uniprot:Q99J62
Length = 364
Score = 187 (70.9 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 62/250 (24%), Positives = 121/250 (48%)
Query: 401 GDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCA 460
G+ + + +KY P+ ++ Q+ V L ++ + L +FYGP GTGKTS
Sbjct: 30 GETKKVKPVPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNL-LFYGPPGTGKTSTI 88
Query: 461 RIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR 520
AR L L + + N+ S +RG + ++E V NF + L + + +
Sbjct: 89 LAAARELFGPELFRLRVLEL-NA--SDERG-IQVVRE--KVKNF---AQLTVSGSRSDGK 139
Query: 521 PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFF 580
P ++I + D+ D+++ + +A+ + +++ + F L+ + + + + SRC KF F
Sbjct: 140 PCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRF 199
Query: 581 PKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRISV 638
+ D L IA KE ++I + + + S+G LR A L+ + L G+ +S
Sbjct: 200 KPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSE 259
Query: 639 PLVQELVGLI 648
++ ++ G+I
Sbjct: 260 DVITDIAGVI 269
>MGI|MGI:1919401 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1919401
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 GO:GO:0005663
HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
GeneTree:ENSGT00550000075072 OMA:ILACARQ CTD:5985 EMBL:AK011489
IPI:IPI00132481 RefSeq:NP_082404.1 UniGene:Mm.27997
ProteinModelPortal:Q9D0F6 SMR:Q9D0F6 STRING:Q9D0F6
PhosphoSite:Q9D0F6 PaxDb:Q9D0F6 PRIDE:Q9D0F6
Ensembl:ENSMUST00000086461 GeneID:72151 KEGG:mmu:72151
InParanoid:Q9D0F6 OrthoDB:EOG4RBQJX NextBio:335574 Bgee:Q9D0F6
CleanEx:MM_RFC5 Genevestigator:Q9D0F6 GermOnline:ENSMUSG00000029363
Uniprot:Q9D0F6
Length = 339
Score = 148 (57.2 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 47/201 (23%), Positives = 93/201 (46%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV-GPVGNFD 505
+ YGP GTGKTS I A A + L + K G + + + R I V GP+
Sbjct: 56 LLYGPPGTGKTST--ILACA---KQLYKDKEFG--SMVLELNASDDRGIDIVRGPI--LS 106
Query: 506 FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565
F S + +++ + D+ D ++ D+ +A+ +V+++ F L+ + L
Sbjct: 107 FASTRTIFKK--------GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLS 158
Query: 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMT 625
+ + SRC +F F + ++ L+ + +E ++I +D +K + + S G +R A
Sbjct: 159 KIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNI 218
Query: 626 LEQLSLLGQRISVPLVQELVG 646
L+ ++ +++ V G
Sbjct: 219 LQSTNMAFGKVTEETVYTCTG 239
Score = 84 (34.6 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 407 RHQNL--TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFA 464
R +NL +KY P+T DL+ + + + ++ L + YGP GTGKTS A
Sbjct: 15 RARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHL-LLYGPPGTGKTSTILACA 73
Query: 465 RAL 467
+ L
Sbjct: 74 KQL 76
>UNIPROTKB|Q9KQI3 [details] [associations]
symbol:VC_2015 "DNA polymerase III, delta prime subunit"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR004622
InterPro:IPR008921 InterPro:IPR015199 Pfam:PF09115 GO:GO:0003677
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008408
GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019 KO:K02341
TIGRFAMs:TIGR00678 HSSP:P28631 PIR:H82127 RefSeq:NP_231649.1
ProteinModelPortal:Q9KQI3 DNASU:2613394 GeneID:2613394
KEGG:vch:VC2015 PATRIC:20083062 OMA:AMNESAS ProtClustDB:PRK06090
Uniprot:Q9KQI3
Length = 324
Score = 182 (69.1 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 56/190 (29%), Positives = 84/190 (44%)
Query: 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGP 500
K+ + G G S + AR L C S Q +PCGFC+SC G + V P
Sbjct: 26 KISSATLIQASEGVGVESLVELMARTLMCTS-SQSEPCGFCHSCGLMQSGNHPDFHVVKP 84
Query: 501 --VG-NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVF 557
+G + E I + S S YR+ V + D ++ S +A+ K ++ +F
Sbjct: 85 EKIGKSITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNESSANALLKTLEEPAPNCLF 144
Query: 558 ILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG 617
ILV+S + L I+SRCQ+ P A ++ +W+ +GI AL L A D
Sbjct: 145 ILVTSRIKHLLPTIVSRCQRLVLPAPTTALVV---EWLKG-QGITTPAYALHLCA---DS 197
Query: 618 SLRDAEMTLE 627
L+ LE
Sbjct: 198 PLKTRAFMLE 207
>TIGR_CMR|VC_2015 [details] [associations]
symbol:VC_2015 "DNA polymerase III, delta prime subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR004622 InterPro:IPR008921
InterPro:IPR015199 Pfam:PF09115 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008408 GO:GO:0003887
GO:GO:0009360 SUPFAM:SSF48019 KO:K02341 TIGRFAMs:TIGR00678
HSSP:P28631 PIR:H82127 RefSeq:NP_231649.1 ProteinModelPortal:Q9KQI3
DNASU:2613394 GeneID:2613394 KEGG:vch:VC2015 PATRIC:20083062
OMA:AMNESAS ProtClustDB:PRK06090 Uniprot:Q9KQI3
Length = 324
Score = 182 (69.1 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 56/190 (29%), Positives = 84/190 (44%)
Query: 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGP 500
K+ + G G S + AR L C S Q +PCGFC+SC G + V P
Sbjct: 26 KISSATLIQASEGVGVESLVELMARTLMCTS-SQSEPCGFCHSCGLMQSGNHPDFHVVKP 84
Query: 501 --VG-NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVF 557
+G + E I + S S YR+ V + D ++ S +A+ K ++ +F
Sbjct: 85 EKIGKSITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNESSANALLKTLEEPAPNCLF 144
Query: 558 ILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG 617
ILV+S + L I+SRCQ+ P A ++ +W+ +GI AL L A D
Sbjct: 145 ILVTSRIKHLLPTIVSRCQRLVLPAPTTALVV---EWLKG-QGITTPAYALHLCA---DS 197
Query: 618 SLRDAEMTLE 627
L+ LE
Sbjct: 198 PLKTRAFMLE 207
>UNIPROTKB|J9NUF8 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
EMBL:AAEX03014719 Ensembl:ENSCAFT00000046634 Uniprot:J9NUF8
Length = 316
Score = 144 (55.7 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 46/201 (22%), Positives = 93/201 (46%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV-GPVGNFD 505
+ YGP GTGKTS I A A + L + K G + + + R I V GP+
Sbjct: 56 LLYGPPGTGKTST--ILACA---KQLYKDKEFG--SMVLELNASDDRGIDIVRGPI--LS 106
Query: 506 FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565
F S + +++ + D+ D ++ D+ +A+ +V+++ F L+ + L
Sbjct: 107 FASTRTIFKK--------GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLS 158
Query: 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMT 625
+ + SRC +F F + ++ L+ + +E +++ +D +K + + S G +R A
Sbjct: 159 KIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEEKVDLSEDGMKALVTLSSGDMRRALNI 218
Query: 626 LEQLSLLGQRISVPLVQELVG 646
L+ ++ +++ V G
Sbjct: 219 LQSTNMAFGKVTEETVYTCTG 239
Score = 82 (33.9 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+KY P+T DL+ + + + ++ L + YGP GTGKTS A+ L
Sbjct: 23 EKYRPQTLNDLISHQDILSTIQKFISEDRLPHL-LLYGPPGTGKTSTILACAKQL 76
>UNIPROTKB|Q32PI3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
HOGENOM:HOG000224152 GeneTree:ENSGT00550000075072 OMA:ILACARQ
CTD:5985 OrthoDB:EOG4RBQJX EMBL:DAAA02045332 EMBL:BC108105
IPI:IPI00688331 RefSeq:NP_001068826.1 UniGene:Bt.21988 SMR:Q32PI3
STRING:Q32PI3 Ensembl:ENSBTAT00000009392 GeneID:508389
KEGG:bta:508389 NextBio:20868499 Uniprot:Q32PI3
Length = 316
Score = 145 (56.1 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 47/201 (23%), Positives = 93/201 (46%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV-GPVGNFD 505
+ YGP GTGKTS I A A + L + K G + + + R I V GP+
Sbjct: 56 LLYGPPGTGKTST--ILACA---KQLYKDKEFG--SMVLELNASDDRGIDIVRGPI--LS 106
Query: 506 FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565
F S + +++ + D+ D ++ D+ +A+ +V+++ F L+ + L
Sbjct: 107 FASTRTIFKK--------GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLS 158
Query: 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMT 625
+ + SRC +F F + ++ L+ + +E ++I +D +K + + S G +R A
Sbjct: 159 KIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRALNI 218
Query: 626 LEQLSLLGQRISVPLVQELVG 646
L+ ++ +++ V G
Sbjct: 219 LQSTNMAFGKVTEETVYTCTG 239
Score = 80 (33.2 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+KY P+T DL+ + + + ++ L + YGP GTGKTS A+ L
Sbjct: 23 EKYRPQTLDDLISHQDILSTIQKFISEDRLPHL-LLYGPPGTGKTSTILACAKQL 76
>UNIPROTKB|P40937 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019899 "enzyme binding" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006281 "DNA repair"
evidence=NAS;TAS] [GO:0005663 "DNA replication factor C complex"
evidence=IDA] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
Reactome:REACT_216 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677
GO:GO:0019899 KO:K10756 GO:GO:0017111 GO:GO:0000084 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
OMA:ILACARQ EMBL:L07540 EMBL:AY254323 EMBL:AK094575 EMBL:AC131159
EMBL:BC001866 EMBL:BC013961 IPI:IPI00031514 IPI:IPI00925306
RefSeq:NP_001123584.1 RefSeq:NP_031396.1 RefSeq:NP_853556.2
UniGene:Hs.731908 PDB:1LFS PDBsum:1LFS ProteinModelPortal:P40937
SMR:P40937 DIP:DIP-36433N IntAct:P40937 MINT:MINT-1372754
STRING:P40937 PhosphoSite:P40937 DMDM:728777 PaxDb:P40937
PRIDE:P40937 DNASU:5985 Ensembl:ENST00000392542
Ensembl:ENST00000454402 GeneID:5985 KEGG:hsa:5985 UCSC:uc001twq.3
CTD:5985 GeneCards:GC12P118454 HGNC:HGNC:9973 HPA:HPA041037
MIM:600407 neXtProt:NX_P40937 PharmGKB:PA34342 InParanoid:P40937
PhylomeDB:P40937 GenomeRNAi:5985 NextBio:23303 ArrayExpress:P40937
Bgee:P40937 CleanEx:HS_RFC5 Genevestigator:P40937
GermOnline:ENSG00000111445 Uniprot:P40937
Length = 340
Score = 145 (56.1 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 46/201 (22%), Positives = 93/201 (46%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV-GPVGNFD 505
+ YGP GTGKTS I A A + L + K G + + + R I + GP+
Sbjct: 57 LLYGPPGTGKTST--ILACA---KQLYKDKEFG--SMVLELNASDDRGIDIIRGPI--LS 107
Query: 506 FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565
F S + +++ + D+ D ++ D+ +A+ +V+++ F L+ + L
Sbjct: 108 FASTRTIFKK--------GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLS 159
Query: 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMT 625
+ + SRC +F F + ++ L+ + +E ++I +D +K + + S G +R A
Sbjct: 160 KIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNI 219
Query: 626 LEQLSLLGQRISVPLVQELVG 646
L+ ++ +++ V G
Sbjct: 220 LQSTNMAFGKVTEETVYTCTG 240
Score = 81 (33.6 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+KY P+T DL+ + + + ++ L + YGP GTGKTS A+ L
Sbjct: 24 EKYRPQTLNDLISHQDILSTIQKFINEDRLPHL-LLYGPPGTGKTSTILACAKQL 77
>UNIPROTKB|E2RCF4 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:AAEX03014719 RefSeq:XP_534696.3
ProteinModelPortal:E2RCF4 Ensembl:ENSCAFT00000015721 GeneID:477499
KEGG:cfa:477499 NextBio:20852966 Uniprot:E2RCF4
Length = 339
Score = 144 (55.7 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 46/201 (22%), Positives = 93/201 (46%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV-GPVGNFD 505
+ YGP GTGKTS I A A + L + K G + + + R I V GP+
Sbjct: 56 LLYGPPGTGKTST--ILACA---KQLYKDKEFG--SMVLELNASDDRGIDIVRGPI--LS 106
Query: 506 FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565
F S + +++ + D+ D ++ D+ +A+ +V+++ F L+ + L
Sbjct: 107 FASTRTIFKK--------GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLS 158
Query: 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMT 625
+ + SRC +F F + ++ L+ + +E +++ +D +K + + S G +R A
Sbjct: 159 KIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEEKVDLSEDGMKALVTLSSGDMRRALNI 218
Query: 626 LEQLSLLGQRISVPLVQELVG 646
L+ ++ +++ V G
Sbjct: 219 LQSTNMAFGKVTEETVYTCTG 239
Score = 82 (33.9 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+KY P+T DL+ + + + ++ L + YGP GTGKTS A+ L
Sbjct: 23 EKYRPQTLNDLISHQDILSTIQKFISEDRLPHL-LLYGPPGTGKTSTILACAKQL 76
>WB|WBGene00018409 [details] [associations]
symbol:F44B9.8 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:FO080400 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:VIAFHER
GeneTree:ENSGT00550000075072 PIR:S44809 RefSeq:NP_498750.2
ProteinModelPortal:P34429 SMR:P34429 DIP:DIP-27001N IntAct:P34429
MINT:MINT-1095598 STRING:P34429 PaxDb:P34429 EnsemblMetazoa:F44B9.8
GeneID:176131 KEGG:cel:CELE_F44B9.8 UCSC:F44B9.8 CTD:176131
WormBase:F44B9.8 InParanoid:P34429 NextBio:891256 Uniprot:P34429
Length = 368
Score = 179 (68.1 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 54/236 (22%), Positives = 106/236 (44%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P +LV + + L+ + R + L +FYGP GTGKT+ AR +
Sbjct: 33 EKYRPSKLDELVAHEQIVKTLTKFIENRTLPHL-LFYGPPGTGKTTTVLAAARQMY---- 87
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEV-GPVGNF-DFESILDLLDNMVTSRPPSQYRIFVF 530
P + + + R I V + NF + + + T P +++ +
Sbjct: 88 ---SPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVP--FKLVIL 142
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ D ++ D+ +A+ +V+++ V F ++ + L ++ I SRC +F F + I+
Sbjct: 143 DEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVP 202
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVG 646
L++I E +++ D + S G +R TL+ ++ +S V + +G
Sbjct: 203 RLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIG 258
>UNIPROTKB|F1RKG3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000075072 OMA:ILACARQ
EMBL:CU468330 Ensembl:ENSSSCT00000010801 Uniprot:F1RKG3
Length = 354
Score = 145 (56.1 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 47/201 (23%), Positives = 93/201 (46%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV-GPVGNFD 505
+ YGP GTGKTS I A A + L + K G + + + R I V GP+
Sbjct: 71 LLYGPPGTGKTST--ILACA---KQLYKDKEFG--SMVLELNASDDRGIDIVRGPI--LS 121
Query: 506 FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565
F S + +++ + D+ D ++ D+ +A+ +V+++ F L+ + L
Sbjct: 122 FASTRTIFKK--------GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLS 173
Query: 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMT 625
+ + SRC +F F + ++ L+ + +E ++I +D +K + + S G +R A
Sbjct: 174 KIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRALNI 233
Query: 626 LEQLSLLGQRISVPLVQELVG 646
L+ ++ +++ V G
Sbjct: 234 LQSTNMAFGKVTEETVYTCTG 254
Score = 81 (33.6 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 397 QQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGK 456
QQ + R+ +KY P+T DL+ + + + ++ L + YGP GTGK
Sbjct: 22 QQQQPEATKIRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHL-LLYGPPGTGK 80
Query: 457 TSCARIFARAL 467
TS A+ L
Sbjct: 81 TSTILACAKQL 91
>TIGR_CMR|BA_0028 [details] [associations]
symbol:BA_0028 "DNA polymerase III, delta prime subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR004622 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006260
GO:GO:0008408 GO:GO:0003887 KO:K02341 TIGRFAMs:TIGR00678
HOGENOM:HOG000192593 RefSeq:NP_842598.1 RefSeq:YP_016633.2
RefSeq:YP_026317.1 ProteinModelPortal:Q81W10 DNASU:1085794
EnsemblBacteria:EBBACT00000013310 EnsemblBacteria:EBBACT00000013749
EnsemblBacteria:EBBACT00000019869 GeneID:1085794 GeneID:2816307
GeneID:2852708 KEGG:ban:BA_0028 KEGG:bar:GBAA_0028 KEGG:bat:BAS0030
OMA:RIESGNH ProtClustDB:PRK08058 BioCyc:BANT260799:GJAJ-37-MONOMER
BioCyc:BANT261594:GJ7F-38-MONOMER Uniprot:Q81W10
Length = 327
Score = 175 (66.7 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 51/213 (23%), Positives = 100/213 (46%)
Query: 416 MPRTFRDLVG-QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQ 474
M +T+ L Q + + L N++ + ++ Y+ G GTGK + A A++ C +
Sbjct: 1 MTKTWEQLSAIQPIGVKMLMNSIAKERISHAYLLEGEKGTGKFATAIQMAKSFLCSQRNR 60
Query: 475 PKPCGFCNSCISHDRGKSRNIKEVGPVG-NFDFESILDLLDNMVTSRPPSQYRIFVFDDC 533
+PC C +C D G N+ V P G + + I DL + + + ++++ +
Sbjct: 61 VEPCHVCTNCKRIDSGNHPNLHIVKPDGLSIKKQQIHDLQEEFSKTGLEANKKVYIIEHA 120
Query: 534 DTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQ 593
D ++ ++ +A+ K ++ IL++ + + I+SRCQ F + +I LQ
Sbjct: 121 DRMTANAANALLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ 180
Query: 594 WIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626
EGI + +L +A++ S +A +TL
Sbjct: 181 ----DEGITV---SLSTLAAQLTNSFDEA-LTL 205
>FB|FBgn0032244 [details] [associations]
symbol:RfC3 "Replication factor C subunit 3" species:7227
"Drosophila melanogaster" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 EMBL:AE014134
GO:GO:0022008 GO:GO:0003677 GO:GO:0006260 GO:GO:0046331 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075072 OMA:ILACARQ HSSP:Q8U4J3 EMBL:AF247499
EMBL:AY119188 RefSeq:NP_609399.1 UniGene:Dm.3298 SMR:Q9VKW3
IntAct:Q9VKW3 MINT:MINT-284572 STRING:Q9VKW3
EnsemblMetazoa:FBtr0080019 GeneID:34423 KEGG:dme:Dmel_CG5313
UCSC:CG5313-RA FlyBase:FBgn0032244 InParanoid:Q9VKW3
OrthoDB:EOG451C6M GenomeRNAi:34423 NextBio:788424 Uniprot:Q9VKW3
Length = 332
Score = 133 (51.9 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 45/201 (22%), Positives = 88/201 (43%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV-GPVGNFD 505
+FYGP GTGKTS AR L P F + + + R I V G + NF
Sbjct: 48 LFYGPPGTGKTSTILACARQLY-------SPQQFKSMVLELNASDDRGIGIVRGQILNFA 100
Query: 506 FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565
+ D +++ + D+ D ++ D+ +A+ +++++ V F ++ + L
Sbjct: 101 STRTI-FCDT---------FKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLS 150
Query: 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMT 625
+ + SRC +F F + ++ L+ I E ++I +D + + + + G +R
Sbjct: 151 KIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNV 210
Query: 626 LEQLSLLGQRISVPLVQELVG 646
L+ + ++ V VG
Sbjct: 211 LQSTVMAFDTVNEDNVYMCVG 231
Score = 90 (36.7 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+KY P DL+ + ++ + R+++ L +FYGP GTGKTS AR L
Sbjct: 15 EKYRPSGLDDLISHEEIISTITRFISRKQLPHL-LFYGPPGTGKTSTILACARQL 68
>UNIPROTKB|E7DN81 [details] [associations]
symbol:E7DN81 "DnaX DNA polymerase III clamp loader complex
gamma-tau-delta subunit" species:59241 "Streptococcus phage Dp-1"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 EMBL:HQ268735
RefSeq:YP_004306905.1 IntAct:E7DN81 GeneID:10358613 Uniprot:E7DN81
Length = 341
Score = 174 (66.3 bits), Expect = 7.0e-10, P = 7.0e-10
Identities = 38/156 (24%), Positives = 81/156 (51%)
Query: 497 EVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVV 556
E+ N E++ +++++ S++++++ D+ LS +++A+ K ++ V
Sbjct: 68 EIDAASNNGVENVRNIIEDSRYKSMDSEFKVYIIDEVHMLSTGAFNALLKTLEEPSSGTV 127
Query: 557 FILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKE-----GIEIDKDALKLI 611
FIL ++ +P I+SR Q+F F ++ + DI+ LQ+I E G ++DAL I
Sbjct: 128 FILCTTDPQKIPDTILSRVQRFDFTRIDNDDIVNQLQFIIESENEEGAGYSYERDALSFI 187
Query: 612 ASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGL 647
++G +RD+ LE++ + + V +G+
Sbjct: 188 GKLANGGMRDSITRLEKVLDYSHHVDMEAVSNALGV 223
>ASPGD|ASPL0000017750 [details] [associations]
symbol:AN8064 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0031389 "Rad17 RFC-like complex" evidence=IEA] [GO:0006272
"leading strand elongation" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000077 "DNA damage
checkpoint" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:BN001302 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:AACD01000139 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8 OMA:ILACARQ
RefSeq:XP_681333.1 ProteinModelPortal:Q5AUG6 STRING:Q5AUG6
EnsemblFungi:CADANIAT00004090 GeneID:2869010 KEGG:ani:AN8064.2
Uniprot:Q5AUG6
Length = 398
Score = 173 (66.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 49/217 (22%), Positives = 100/217 (46%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL-NCQS 471
+KY P T D+ G + ++ V ++ L + YGP GTGKTS AR + ++
Sbjct: 49 EKYRPNTLDDVSGHKDILATINRFVEANQLPHL-LLYGPPGTGKTSTILALARRIYGSKN 107
Query: 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNF-DFESILDLLDNMVTSRPPSQYRIFVF 530
+ Q S DRG ++E + F + I + + + +++ +
Sbjct: 108 MRQM----VLELNASDDRGIDV-VRE--QIKTFASTKQIFSMAPSATGKSSLASFKLIIL 160
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ D ++ + A+ +++++ F ++++ L ++SRC +F F +K+ DI
Sbjct: 161 DEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRV 220
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLE 627
+ + KE + I +A+ + + S G +R A L+
Sbjct: 221 LIDQVIEKEDVRIQPEAVDSLVTLSRGDMRRALNVLQ 257
>TIGR_CMR|DET_0535 [details] [associations]
symbol:DET_0535 "DNA polymerase III, delta prime subunit"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] EMBL:CP000027 GenomeReviews:CP000027_GR
eggNOG:COG0470 GO:GO:0003887 KO:K02341 RefSeq:YP_181279.1
ProteinModelPortal:Q3Z920 STRING:Q3Z920 GeneID:3230147
KEGG:det:DET0535 PATRIC:21608137 HOGENOM:HOG000192593 OMA:AFIKIDQ
ProtClustDB:CLSK935628 BioCyc:DETH243164:GJNF-535-MONOMER
Uniprot:Q3Z920
Length = 339
Score = 171 (65.3 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 58/240 (24%), Positives = 119/240 (49%)
Query: 423 LVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQP-KPCGFC 481
++GQ+ L N++ + K+ YVFYG G GK A FA+ALNCQ+ P + C C
Sbjct: 4 IIGQDKAVSFLCNSLNQDKLCHAYVFYGQSGVGKKRMALSFAQALNCQAASPPCQECPVC 63
Query: 482 NSCISHDRGKSRNIKEVGPVGNFDFESILDL----LDNM--VTSRPP--SQYRIFVFDDC 533
++ + +I+ + + D ++ ++ ++++ S PP +Y++F+
Sbjct: 64 ERIMAGNFPDVIHIELLSAEDSSDGKAKAEIGVKQVEDIQHAASLPPFEGKYKVFIIHQA 123
Query: 534 DTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQ 593
+ LS +S + + K ++ + +FIL+++ L ++SRCQ K + +I+
Sbjct: 124 EKLSVESSNRLLKTLEEPGSQNIFILLTADKSLLLPTVLSRCQILEL-KYAETGLIHEA- 181
Query: 594 WIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-ISVPLVQELVGLISDEK 652
+I K+G+ D++ +L++ S G + A +L +R + + ++G DE+
Sbjct: 182 FI--KQGL--DEEKAELLSHLSYGRVGWAMEAASNPEILEERKAKIDKIMRVLG--QDEE 235
>POMBASE|SPAC27E2.10c [details] [associations]
symbol:rfc3 "DNA replication factor C complex subunit
Rfc3" species:4896 "Schizosaccharomyces pombe" [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IC;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=TAS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IC]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0065007 "biological regulation" evidence=NAS]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC27E2.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0000077 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006261 GO:GO:0000790
GO:GO:0043596 KO:K10756 GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 EMBL:AB017039 EMBL:AB017040 EMBL:AJ012839 PIR:T43410
RefSeq:XP_001713099.1 ProteinModelPortal:O14003 SMR:O14003
STRING:O14003 EnsemblFungi:SPAC27E2.10c.1 GeneID:2541493
KEGG:spo:SPAC27E2.10c HOGENOM:HOG000224152 OMA:VIAFHER
OrthoDB:EOG4K0TX8 NextBio:20802592 Uniprot:O14003
Length = 342
Score = 134 (52.2 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 34/157 (21%), Positives = 74/157 (47%)
Query: 493 RN-IKEVGPVGNFDFESILDLLDNMVTSRP--PSQYRIFVFDDCDTLSPDSWSAISKVVD 549
RN + E+ + +++ + + N ++R S +++ + D+ D ++ + +A+ +V++
Sbjct: 86 RNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAMTLAAQNALRRVIE 145
Query: 550 RAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALK 609
+ + V F ++ + ++ + I SRC +F F + +I T+ + E ID DA
Sbjct: 146 KYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAKM 205
Query: 610 LIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVG 646
+ S G +R A L+ I V + VG
Sbjct: 206 AVLRLSKGDMRKALNILQACHAAYDHIDVSAIYNCVG 242
Score = 84 (34.6 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTS----CAR 461
+KY P D+V + L + +V + +FYGP GTGKTS CAR
Sbjct: 27 EKYRPANLEDVVSHKDIISTLEKFISSNRVPHM-LFYGPPGTGKTSTILACAR 78
>CGD|CAL0003213 [details] [associations]
symbol:RCF3 species:5476 "Candida albicans" [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1 RFC-like
complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0000077
"DNA damage checkpoint" evidence=IEA] [GO:0003689 "DNA clamp loader
activity" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 CGD:CAL0003213 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224152 EMBL:AACQ01000224
RefSeq:XP_710951.1 ProteinModelPortal:Q59ML2 SMR:Q59ML2
STRING:Q59ML2 GeneID:3647440 KEGG:cal:CaO19.3211 Uniprot:Q59ML2
Length = 361
Score = 164 (62.8 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 52/216 (24%), Positives = 98/216 (45%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P + ++ GQ + + V K+ L +FYGP GTGKTS I A A
Sbjct: 27 EKYRPDSLEEVKGQQEIVDTVRKFVETGKLPHL-LFYGPSGTGKTST--IIALAKEIYGA 83
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEV-GPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
K N + + R I V + NF + N + +Q+++ + D
Sbjct: 84 TNYK-----NMILELNASDDRGIDVVRNQIKNFASTRQI-FTKNTSQTASNNQFKLIILD 137
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+ D ++ + +++ +V+++ + F ++++ L +ISRC +F F + + I
Sbjct: 138 EADAMTNVAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDR 197
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLE 627
L + KE + I +A+ + S+G +R A L+
Sbjct: 198 LNTVIIKENVNISPEAIDALLKLSNGDMRRALNVLQ 233
>ZFIN|ZDB-GENE-040824-3 [details] [associations]
symbol:rfc4 "replication factor C (activator 1) 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0060041 "retina development in
camera-type eye" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-040824-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0060041 GO:GO:0017111 KO:K10755
eggNOG:COG0470 SUPFAM:SSF48019 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4Q58PN
EMBL:AY648805 IPI:IPI00506924 RefSeq:NP_999902.2 UniGene:Dr.77554
ProteinModelPortal:Q6DRF4 STRING:Q6DRF4 PRIDE:Q6DRF4 GeneID:406435
KEGG:dre:406435 NextBio:20818031 ArrayExpress:Q6DRF4 Bgee:Q6DRF4
Uniprot:Q6DRF4
Length = 358
Score = 162 (62.1 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 73/320 (22%), Positives = 142/320 (44%)
Query: 380 LKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMR 439
LK + + ++ S + G+ + R +KY P+ ++ Q V L ++
Sbjct: 5 LKGSSSQSVKAQKPSSSSSSGGEKKQ-RAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEG 63
Query: 440 RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVG 499
+ L +FYGP GTGKTS AR L L + + N+ S +RG + ++E
Sbjct: 64 ADLPNL-LFYGPPGTGKTSTILAAARELYGPDLYRQRVLEL-NA--SDERG-IQVVRE-- 116
Query: 500 PVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFIL 559
V F ++ + T PP ++I + D+ D+++ + +A+ + +++ R F L
Sbjct: 117 KVKRFAQLTVAGTRPDGKTC-PP--FKIIILDEADSMTSAAQAALRRTMEKESRTTRFCL 173
Query: 560 VSSSLDALPHIIISRCQKFFF-PKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGS 618
+ + + + + SRC KF F P D L+ I KE ++ + + + S+G
Sbjct: 174 ICNYVSRIIEPLTSRCSKFRFKPLANDVQQERILE-ICRKENLKYTTEGVDALVRVSEGD 232
Query: 619 LRDAEMTLEQLSLLG--QRISVPLVQELVGLISDEKXXXXXXXXXXXXTVNTVK-NLRVI 675
LR A L+ + L + I+ + E+ G++ K T ++ ++ +
Sbjct: 233 LRKAITFLQSGARLNSEREITEQTIIEIAGVVPP-KVIQSLLHICYKGTFEKLEVAVKDM 291
Query: 676 METGVEPLALMSQLATVITD 695
++ G L++QL VI +
Sbjct: 292 IDQGYAATNLLNQLHDVIIE 311
>DICTYBASE|DDB_G0282235 [details] [associations]
symbol:rfc5 "replication factor C subunit 5"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006272 "leading strand elongation" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
dictyBase:DDB_G0282235 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0016887 GO:GO:0006298
KO:K10756 EMBL:AAFI02000046 eggNOG:COG0470 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 RefSeq:XP_640301.1 HSSP:P38629
ProteinModelPortal:Q54ST4 STRING:Q54ST4 EnsemblProtists:DDB0232229
GeneID:8623477 KEGG:ddi:DDB_G0282235 OMA:ILACARQ Uniprot:Q54ST4
Length = 347
Score = 161 (61.7 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 51/219 (23%), Positives = 96/219 (43%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P+ DL+ + Q ++ + + L +FYGP GTGKTS + AR L +
Sbjct: 28 EKYRPKNLDDLIAHEDITQTITKLIDNNTLPHL-LFYGPPGTGKTSTIQAIARKLYGDNY 86
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ S DRG I V E I +M Y++ + D+
Sbjct: 87 SRM----VLELNASDDRG----IDVVR-------EQIKTFASSMFFFNTTVPYKLIILDE 131
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
D+++ + +A+ +V+++ + F +V + + + + SRC +F F + L
Sbjct: 132 ADSMTNIAQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRL 191
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL 631
+ I KE +++D A+ + G +R L+ +S+
Sbjct: 192 KEIIEKENVKVDSKAMNAVLELGCGDMRKCLNILQSVSM 230
>TIGR_CMR|GSU_2230 [details] [associations]
symbol:GSU_2230 "DNA polymerase III, delta prime subunit"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR004622 GO:GO:0006260
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008408 GO:GO:0003887
KO:K02341 TIGRFAMs:TIGR00678 HSSP:P28631 HOGENOM:HOG000192593
OMA:AFIKIDQ RefSeq:NP_953279.1 ProteinModelPortal:Q74AW9
GeneID:2687562 KEGG:gsu:GSU2230 PATRIC:22027315
ProtClustDB:CLSK828770 BioCyc:GSUL243231:GH27-2186-MONOMER
Uniprot:Q74AW9
Length = 323
Score = 158 (60.7 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 57/212 (26%), Positives = 95/212 (44%)
Query: 416 MPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQP 475
MP F ++GQ L A+ K Y+F G G GK + A F A C+ +
Sbjct: 1 MP--FSRVLGQETAVNVLQRALRSGKTAHAYLFEGIEGCGKMTTALAFIEAAFCR---RD 55
Query: 476 KPCGFCNSCISHDRGKSRNIKEVGPVGNF-DFESILDLLDNMVTSRP-PSQYRIFVFDDC 533
CG C SC + ++ + P G F + + +L ++ RP + + + DD
Sbjct: 56 DGCGSCPSCRKMAGLQHPDLHRLAPEGAFIKIDQVREL-QRELSLRPVEAPMKACIIDDA 114
Query: 534 DTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQ 593
D L+P + +A+ K ++ P + IL++++ + + SRCQ F + + +I
Sbjct: 115 DRLNPAAANALLKTLEEPPGNALLILLTTNPAGILPTVRSRCQLLRFSPLPER-VIEEYL 173
Query: 594 WIASKEGIEIDKDALKLIASRSDGSL-RDAEM 624
A +E A +L AS + GSL R EM
Sbjct: 174 TDAGREPA-----AARLAASLAGGSLSRALEM 200
>UNIPROTKB|O06363 [details] [associations]
symbol:Rv3644c "Possible DNA polymerase" species:1773
"Mycobacterium tuberculosis" [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR003593 InterPro:IPR004622 SMART:SM00382 GO:GO:0005829
GenomeReviews:AL123456_GR GO:GO:0000166 EMBL:BX842583 GO:GO:0006260
GO:GO:0017111 GO:GO:0008408 GO:GO:0003887 KO:K02341
TIGRFAMs:TIGR00678 EMBL:AL123456 PIR:E70563 RefSeq:NP_218161.1
RefSeq:YP_006517131.1 HSSP:P28631 ProteinModelPortal:O06363
SMR:O06363 PRIDE:O06363 EnsemblBacteria:EBMYCT00000000905
GeneID:13317252 GeneID:885553 KEGG:mtu:Rv3644c KEGG:mtv:RVBD_3644c
PATRIC:18156710 TubercuList:Rv3644c HOGENOM:HOG000192594
OMA:AFKLRRI ProtClustDB:PRK07940 Uniprot:O06363
Length = 401
Score = 158 (60.7 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 61/218 (27%), Positives = 99/218 (45%)
Query: 416 MPRTFRDLVGQNLV-AQALSNAVMRRKV--------GLL---YVFYGPHGTGKTSCARIF 463
M F LVGQ V A+ L+ A R+ G + ++ GP G+G++ A F
Sbjct: 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60
Query: 464 ARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVG-NFDFESILDLLDNMVTSRPP 522
A AL C S +P CG C +C + G +++ V P G + + + ++ + RP
Sbjct: 61 AAALQCTSGGEPG-CGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQ-IAARRPT 118
Query: 523 S-QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA--LPHIIISRCQKFF 579
+ ++I V +D D L+ + +A+ KVV+ P VF+L + S+D + + SRC+
Sbjct: 119 TGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVA 178
Query: 580 FPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG 617
I L +G +D D AS S G
Sbjct: 179 LVTPSTHAIAQVLS-----DGDGLDPDTANWAASVSGG 211
>UNIPROTKB|C9J8M3 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 OrthoDB:EOG4Q58PN IPI:IPI00792595
ProteinModelPortal:C9J8M3 SMR:C9J8M3 STRING:C9J8M3
Ensembl:ENST00000418288 ArrayExpress:C9J8M3 Bgee:C9J8M3
Uniprot:C9J8M3
Length = 214
Score = 142 (55.0 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 46/185 (24%), Positives = 89/185 (48%)
Query: 401 GDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCA 460
G+N+ + +KY P+ ++ Q V L ++ + L +FYGP GTGKTS
Sbjct: 30 GENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNL-LFYGPPGTGKTSTI 88
Query: 461 RIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR 520
AR L L + + N+ S +RG + ++E V NF + L + + +
Sbjct: 89 LAAARELFGPELFRLRVLEL-NA--SDERG-IQVVRE--KVKNF---AQLTVSGSRSDGK 139
Query: 521 PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFF 580
P ++I + D+ D+++ + +A+ + +++ + F L+ + + + + SRC KF F
Sbjct: 140 PCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRF 199
Query: 581 PKMKD 585
+ D
Sbjct: 200 KPLSD 204
>TAIR|locus:2180315 [details] [associations]
symbol:EMB2775 "EMBRYO DEFECTIVE 2775" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
HOGENOM:HOG000224153 OMA:TRIMCLL HSSP:Q8U4J3 EMBL:AY074381
EMBL:AY091236 IPI:IPI00528406 RefSeq:NP_198126.1 UniGene:At.19785
ProteinModelPortal:Q8VXX4 SMR:Q8VXX4 STRING:Q8VXX4 PaxDb:Q8VXX4
PRIDE:Q8VXX4 EnsemblPlants:AT5G27740.1 GeneID:832836
KEGG:ath:AT5G27740 TAIR:At5g27740 InParanoid:Q8VXX4
PhylomeDB:Q8VXX4 ProtClustDB:CLSN2687133 ArrayExpress:Q8VXX4
Genevestigator:Q8VXX4 Uniprot:Q8VXX4
Length = 354
Score = 150 (57.9 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 54/229 (23%), Positives = 100/229 (43%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
KY P++ ++ +AQ L V + L +FYGP G+GK + + + S E
Sbjct: 6 KYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHL-LFYGPSGSGKKTLIMALLKQIYGASAE 64
Query: 474 QPK--------PCGFCNSCISHDRGKSRNIKEVGP--VGNFDFESILDLLDNMVTSRP-- 521
+ K G + S N E+ P G D + +++ M +RP
Sbjct: 65 KVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRPID 124
Query: 522 ---PSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKF 578
Y++ V ++ D LS ++ ++ + +++ IL +S + I SRC
Sbjct: 125 TKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCLNV 184
Query: 579 FFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLE 627
+I+ L+++A KE +++ + IA +S+ SLR A ++LE
Sbjct: 185 RINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLE 233
>TAIR|locus:2204710 [details] [associations]
symbol:RFC3 "replication factor C subunit 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0031348 "negative regulation of defense
response" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0051567
"histone H3-K9 methylation" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005524 GO:GO:0031348 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 EMBL:AC010704 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:ILACARQ HSSP:Q8U4J3
EMBL:AY065452 EMBL:AY117282 IPI:IPI00521569 PIR:A96804
RefSeq:NP_177871.1 UniGene:At.28476 UniGene:At.70634
ProteinModelPortal:Q9CAQ8 SMR:Q9CAQ8 STRING:Q9CAQ8 PaxDb:Q9CAQ8
PRIDE:Q9CAQ8 EnsemblPlants:AT1G77470.1 GeneID:844083
KEGG:ath:AT1G77470 TAIR:At1g77470 InParanoid:Q9CAQ8
PhylomeDB:Q9CAQ8 ProtClustDB:CLSN2682996 ArrayExpress:Q9CAQ8
Genevestigator:Q9CAQ8 Uniprot:Q9CAQ8
Length = 369
Score = 150 (57.9 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 49/225 (21%), Positives = 94/225 (41%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P++ D+ + + K+ L + YGP GTGKTS AR L
Sbjct: 43 EKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHL-LLYGPPGTGKTSTILAVAR-----KL 96
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
PK + N + + R I V + I D S S ++ + D+
Sbjct: 97 YGPK---YRNMILELNASDDRGIDVVR-------QQIQDFASTQSFSLGKSSVKLVLLDE 146
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
D ++ D+ A+ +V+++ + F L+ + ++ + + SRC +F F + + L
Sbjct: 147 ADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRL 206
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRIS 637
+ + E + + L + S+G +R A L+ + + I+
Sbjct: 207 KHVIEAERLVVSDCGLAALVRLSNGDMRKALNILQSTHMASKEIT 251
>SGD|S000000291 [details] [associations]
symbol:RFC5 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0031390 "Ctf18
RFC-like complex" evidence=IPI] [GO:0003689 "DNA clamp loader
activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IMP;IPI] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA;IMP] [GO:0006298
"mismatch repair" evidence=TAS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031389 "Rad17 RFC-like complex" evidence=IDA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 SGD:S000000291 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:BK006936 GO:GO:0006298 EMBL:X78993
RefSeq:NP_009644.3 GeneID:852383 KEGG:sce:YBR087W KO:K10756
GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
EMBL:Z35956 PDB:1SXJ PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153 OMA:TRIMCLL
OrthoDB:EOG4R273P EMBL:U26031 EMBL:AY693173 PIR:S48257
RefSeq:NP_009648.4 ProteinModelPortal:P38251 SMR:P38251
DIP:DIP-2531N IntAct:P38251 MINT:MINT-480383 STRING:P38251
PaxDb:P38251 PeptideAtlas:P38251 EnsemblFungi:YBR087W GeneID:852387
KEGG:sce:YBR090C CYGD:YBR087w EvolutionaryTrace:P38251
NextBio:971189 Genevestigator:P38251 GermOnline:YBR087W
Uniprot:P38251
Length = 354
Score = 142 (55.0 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 40/152 (26%), Positives = 81/152 (53%)
Query: 495 IKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRR 554
+KEV + DF+ D D + +Y+ + ++ ++L+ D+ +A+ + +++ +
Sbjct: 113 LKEVAQMEQVDFQ---DSKDGLA-----HRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164
Query: 555 VVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEID-KDALKLIAS 613
+ I+V S+ + I SRC P D++I L + + E I+++ KD LK IA
Sbjct: 165 IRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQ 224
Query: 614 RSDGSLRDAEMTLEQLSL---LGQRISVPLVQ 642
S+G+LR + + LE ++L L + S P+++
Sbjct: 225 ASNGNLRVSLLMLESMALNNELALKSSSPIIK 256
Score = 50 (22.7 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 414 KYMPRTFRDLVGQNLVAQALSN-AVMRRKVGLLYVFYGPHGTGK-TSC 459
KY P++ L + L + + R + L + YGP+GTGK T C
Sbjct: 7 KYRPKSLNALSHNEELTNFLKSLSDQPRDLPHL-LLYGPNGTGKKTRC 53
>SGD|S000005234 [details] [associations]
symbol:RFC3 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IPI] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA] [GO:0006272 "leading
strand elongation" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007062 "sister chromatid cohesion" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000005234
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:BK006947
GO:GO:0016887 GO:GO:0006298 KO:K10756 eggNOG:COG0470 EMBL:U23084
GO:GO:0031390 GO:GO:0007062 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 GO:GO:0031391 EMBL:Z71566 PDB:1SXJ PDBsum:1SXJ
GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8
EMBL:L18755 EMBL:U26029 PIR:A36988 RefSeq:NP_014109.1
ProteinModelPortal:P38629 SMR:P38629 DIP:DIP-2529N IntAct:P38629
MINT:MINT-540713 STRING:P38629 PaxDb:P38629 PeptideAtlas:P38629
EnsemblFungi:YNL290W GeneID:855426 KEGG:sce:YNL290W CYGD:YNL290w
GeneTree:ENSGT00550000075072 OMA:YAHKLTP EvolutionaryTrace:P38629
NextBio:979295 Genevestigator:P38629 GermOnline:YNL290W
Uniprot:P38629
Length = 340
Score = 96 (38.9 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 19/96 (19%), Positives = 50/96 (52%)
Query: 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMK 584
+++ + D+ D ++ + +A+ +V++R + F ++++ L ++SRC +F F +
Sbjct: 111 FKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLP 170
Query: 585 DADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLR 620
I + + E +++ +A K + S+G +R
Sbjct: 171 QEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMR 206
Score = 95 (38.5 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 409 QNL--TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466
+NL +KY P T ++ GQN V + V K+ L +FYGP GTGKTS AR
Sbjct: 11 ENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHL-LFYGPPGTGKTSTIVALARE 69
Query: 467 L 467
+
Sbjct: 70 I 70
>ZFIN|ZDB-GENE-050306-29 [details] [associations]
symbol:rfc2 "replication factor C (activator 1) 2"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-050306-29 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 SUPFAM:SSF48019 GeneTree:ENSGT00550000075050
Pfam:PF08542 EMBL:CR450711 IPI:IPI00505688
Ensembl:ENSDART00000122513 Bgee:F1R0T0 Uniprot:F1R0T0
Length = 384
Score = 137 (53.3 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 45/181 (24%), Positives = 80/181 (44%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF 506
+ GP GTGKT+ ARAL +++ S+DRG + V N
Sbjct: 103 IIAGPPGTGKTTSILCLARALLGPAMKD----AVLELNASNDRG-------IDVVRN--- 148
Query: 507 ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566
I VT P +++I + D+ D+++ + A+ + ++ + F L ++ D
Sbjct: 149 -KIKMFAQQKVTL-PKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDK 206
Query: 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626
+ I SRC + K++D I+ L + KE + + D L+ I + G +R A L
Sbjct: 207 IIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKENLHVTNDGLEAIIFTAQGDMRQALNNL 266
Query: 627 E 627
+
Sbjct: 267 Q 267
>FB|FBgn0260985 [details] [associations]
symbol:RfC4 "Replication factor C subunit 4" species:7227
"Drosophila melanogaster" [GO:0007076 "mitotic chromosome
condensation" evidence=IMP;NAS] [GO:0000819 "sister chromatid
segregation" evidence=NAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=NAS;TAS] [GO:0006260 "DNA replication"
evidence=ISS;NAS;TAS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;NAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA;NAS]
[GO:0016321 "female meiosis chromosome segregation" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0000077 "DNA damage checkpoint" evidence=IMP]
[GO:0000076 "DNA replication checkpoint" evidence=IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0000077
GO:GO:0005875 EMBL:AE014296 GO:GO:0022008 GO:GO:0003677
GO:GO:0006281 GO:GO:0046331 GO:GO:0017111 GO:GO:0007076 KO:K10755
eggNOG:COG0470 GO:GO:0016321 GO:GO:0000076 GO:GO:0006271
SUPFAM:SSF48019 EMBL:U15967 GeneTree:ENSGT00550000075050
OMA:IQCLARI Pfam:PF08542 EMBL:AY094829 PIR:S55020
RefSeq:NP_523915.1 UniGene:Dm.839 ProteinModelPortal:P53034
SMR:P53034 DIP:DIP-22077N IntAct:P53034 MINT:MINT-925288
STRING:P53034 PaxDb:P53034 PRIDE:P53034 EnsemblMetazoa:FBtr0073264
GeneID:38492 KEGG:dme:Dmel_CG14999 CTD:5984 FlyBase:FBgn0260985
InParanoid:P53034 OrthoDB:EOG4P8D0Q PhylomeDB:P53034
GenomeRNAi:38492 NextBio:808930 Bgee:P53034 GermOnline:CG14999
Uniprot:P53034
Length = 331
Score = 112 (44.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 42/181 (23%), Positives = 77/181 (42%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF 506
+ GP G GKT+ + AR L S ++ S++RG + V N
Sbjct: 53 IIAGPPGVGKTTTIQCLARILLGDSYKE----AVLELNASNERG-------IDVVRN--- 98
Query: 507 ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566
I VT P +++I + D+ D+++ + A+ + ++ F L ++ +
Sbjct: 99 -KIKMFAQQKVTL-PRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEK 156
Query: 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626
+ I SRC F K+ DA ++ L +A E + +D L+ I + G +R L
Sbjct: 157 IIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNL 216
Query: 627 E 627
+
Sbjct: 217 Q 217
Score = 70 (29.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 397 QQNLGDNRNGRHQNLTQKYMPRTFRDLVG-QNLVAQALSNAVMRRKVGLLYVFYGPHGTG 455
++ D R+ H +KY P F+++VG ++ VA+ A ++ GP G G
Sbjct: 6 EKTADDKRS--HLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIA--GPPGVG 61
Query: 456 KTSCARIFARAL 467
KT+ + AR L
Sbjct: 62 KTTTIQCLARIL 73
>UNIPROTKB|P35250 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006260 "DNA replication"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=TAS] [GO:0032201 "telomere maintenance via
semi-conservative replication" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0003677 GO:GO:0017111 GO:GO:0000084 KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722 EMBL:CH471200
Orphanet:904 Reactome:REACT_383 GO:GO:0006283 GO:GO:0006271
GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663
EMBL:AF045555 EMBL:AC005081 CTD:5982 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI Pfam:PF08542 EMBL:M87338
EMBL:AF483622 EMBL:AB451243 EMBL:BC002813 IPI:IPI00017412
IPI:IPI00218280 PIR:A42700 RefSeq:NP_002905.2 RefSeq:NP_852136.1
UniGene:Hs.647062 ProteinModelPortal:P35250 SMR:P35250
DIP:DIP-34367N IntAct:P35250 STRING:P35250 PhosphoSite:P35250
DMDM:2507300 PaxDb:P35250 PeptideAtlas:P35250 PRIDE:P35250
DNASU:5982 Ensembl:ENST00000055077 Ensembl:ENST00000352131
Ensembl:ENST00000573234 Ensembl:ENST00000576908 GeneID:5982
KEGG:hsa:5982 UCSC:uc003uaj.3 GeneCards:GC07M073645 HGNC:HGNC:9970
HPA:HPA029493 MIM:194050 MIM:600404 neXtProt:NX_P35250
PharmGKB:PA34339 InParanoid:P35250 PhylomeDB:P35250 ChiTaRS:RFC2
GenomeRNAi:5982 NextBio:23285 ArrayExpress:P35250 Bgee:P35250
CleanEx:HS_RFC2 Genevestigator:P35250 GermOnline:ENSG00000049541
Uniprot:P35250
Length = 354
Score = 134 (52.2 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 47/181 (25%), Positives = 79/181 (43%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF 506
+ GP GTGKT+ ARAL +L+ S+DRG + V N
Sbjct: 73 IIAGPPGTGKTTSILCLARALLGPALKD----AMLELNASNDRG-------IDVVRN--- 118
Query: 507 ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566
I VT P +++I + D+ D+++ + A+ + ++ + F L ++ D
Sbjct: 119 -KIKMFAQQKVTL-PKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDK 176
Query: 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626
+ I SRC + K+ DA I+ L + KE + D L+ I + G +R A L
Sbjct: 177 IIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNL 236
Query: 627 E 627
+
Sbjct: 237 Q 237
>CGD|CAL0004366 [details] [associations]
symbol:RFC5 species:5476 "Candida albicans" [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0003689
"DNA clamp loader activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0004366
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
eggNOG:COG0470 EMBL:AACQ01000031 SUPFAM:SSF48019 Pfam:PF08542
RefSeq:XP_719478.1 ProteinModelPortal:Q5AD38 STRING:Q5AD38
GeneID:3638890 KEGG:cal:CaO19.2029 Uniprot:Q5AD38
Length = 362
Score = 134 (52.2 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 61/248 (24%), Positives = 108/248 (43%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTS---CA--RIFARALN 468
KY PRT L + + +L L V YGP G+GK + C IF +
Sbjct: 7 KYRPRTLDQLTYHDSITNSLRALAKSGDFPHLLV-YGPSGSGKKTRIYCTLNEIFGPQVE 65
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGP--VGNFDFESILDLLDNMVT-------- 518
++ N + + S N E+ P +GN D I DLL ++ +
Sbjct: 66 KLKIDVKNFVTSSNRKLEFNVLSSSNHLEITPSDMGNNDRVVIQDLLKDVASTEQVDFAN 125
Query: 519 -SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQK 577
SR +++I + ++ D+LS D+ +A+ + +++ + ILV +S+ + I SR
Sbjct: 126 QSRAKHRFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPIKSRTLL 185
Query: 578 FFFPKMKDADIIYTLQWIASKEGIEID--KDA-----LKLIASRSDGSLRDAEMTLEQLS 630
P +I + L +A KE ++ D+ IA S+ +LR ++ E +S
Sbjct: 186 VRIPSPSVDNINHILGHVAEKESLKFSTHNDSEINHFYSKIAETSNRNLRRCLLSFETIS 245
Query: 631 LLGQRISV 638
+ + I+V
Sbjct: 246 MQNETINV 253
>UNIPROTKB|I3LHX6 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 GeneTree:ENSGT00550000075050 OMA:IQCLARI Pfam:PF08542
EMBL:FP340223 Ensembl:ENSSSCT00000028815 Uniprot:I3LHX6
Length = 295
Score = 131 (51.2 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 47/181 (25%), Positives = 79/181 (43%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF 506
+ GP GTGKT+ ARAL +L+ S+DRG + V N
Sbjct: 14 IIAGPPGTGKTTSILCLARALLGPALKD----AVLELNASNDRG-------IDVVRN--- 59
Query: 507 ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566
I VT P +++I + D+ D+++ + A+ + ++ + F L ++ D
Sbjct: 60 -KIKMFAQQKVTL-PKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDK 117
Query: 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626
+ I SRC + K+ DA I+ L + KE + D L+ I + G +R A L
Sbjct: 118 IIEPIQSRCAVLRYTKLTDAQILARLLNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNL 177
Query: 627 E 627
+
Sbjct: 178 Q 178
>UNIPROTKB|F8W9B4 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 KO:K10756
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AC131159 RefSeq:NP_001123584.1
UniGene:Hs.731908 DNASU:5985 GeneID:5985 KEGG:hsa:5985 CTD:5985
HGNC:HGNC:9973 GenomeRNAi:5985 NextBio:23303 IPI:IPI00908568
ProteinModelPortal:F8W9B4 SMR:F8W9B4 PRIDE:F8W9B4
Ensembl:ENST00000229043 ArrayExpress:F8W9B4 Bgee:F8W9B4
Uniprot:F8W9B4
Length = 255
Score = 129 (50.5 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 25/122 (20%), Positives = 63/122 (51%)
Query: 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMK 584
+++ + D+ D ++ D+ +A+ +V+++ F L+ + L + + SRC +F F +
Sbjct: 34 FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLT 93
Query: 585 DADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQEL 644
++ L+ + +E ++I +D +K + + S G +R A L+ ++ +++ V
Sbjct: 94 PELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTC 153
Query: 645 VG 646
G
Sbjct: 154 TG 155
>MGI|MGI:1341868 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1341868
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 EMBL:AF289664
SUPFAM:SSF48019 GO:GO:0005663 EMBL:AF139987 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
ChiTaRS:RFC2 EMBL:AK075997 EMBL:BC023028 IPI:IPI00124744
RefSeq:NP_064406.1 UniGene:Mm.332739 ProteinModelPortal:Q9WUK4
SMR:Q9WUK4 STRING:Q9WUK4 PhosphoSite:Q9WUK4 PaxDb:Q9WUK4
PRIDE:Q9WUK4 Ensembl:ENSMUST00000023867 GeneID:19718 KEGG:mmu:19718
InParanoid:Q9WUK4 NextBio:297116 Bgee:Q9WUK4 CleanEx:MM_RFC2
Genevestigator:Q9WUK4 GermOnline:ENSMUSG00000023104 Uniprot:Q9WUK4
Length = 349
Score = 132 (51.5 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 46/181 (25%), Positives = 79/181 (43%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF 506
+ GP GTGKT+ ARAL +L+ S+DRG + V N
Sbjct: 68 IIAGPPGTGKTTSILCLARALLGPALKD----AVLELNASNDRG-------IDVVRN--- 113
Query: 507 ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566
I VT P +++I + D+ D+++ + A+ + ++ + F L ++ D
Sbjct: 114 -KIKMFAQQKVTL-PKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDK 171
Query: 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626
+ I SRC + K+ DA ++ L + KE + D L+ I + G +R A L
Sbjct: 172 IIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNL 231
Query: 627 E 627
+
Sbjct: 232 Q 232
>RGD|621198 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:621198
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 OMA:IQCLARI
OrthoDB:EOG48WC2D Pfam:PF08542 HSSP:P40339 EMBL:BC082110
IPI:IPI00194781 RefSeq:NP_446238.1 UniGene:Rn.113319
ProteinModelPortal:Q641W4 SMR:Q641W4 STRING:Q641W4 PRIDE:Q641W4
Ensembl:ENSRNOT00000001989 GeneID:116468 KEGG:rno:116468
UCSC:RGD:621198 InParanoid:Q641W4 NextBio:619010
Genevestigator:Q641W4 Uniprot:Q641W4
Length = 349
Score = 132 (51.5 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 46/181 (25%), Positives = 79/181 (43%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF 506
+ GP GTGKT+ ARAL +L+ S+DRG + V N
Sbjct: 68 IIAGPPGTGKTTSILCLARALLGPALKD----AVLELNASNDRG-------IDVVRN--- 113
Query: 507 ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566
I VT P +++I + D+ D+++ + A+ + ++ + F L ++ D
Sbjct: 114 -KIKMFAQQKVTL-PKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDK 171
Query: 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626
+ I SRC + K+ DA ++ L + KE + D L+ I + G +R A L
Sbjct: 172 IIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNL 231
Query: 627 E 627
+
Sbjct: 232 Q 232
>UNIPROTKB|P53033 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006302
"double-strand break repair" evidence=TAS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005654 GO:GO:0003677
GO:GO:0006260 GO:GO:0000724 GO:GO:0017111 KO:K10755 eggNOG:COG0470
Reactome:REACT_115612 SUPFAM:SSF48019 GO:GO:0005663 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
EMBL:U12438 IPI:IPI00586061 PIR:I50704 RefSeq:NP_990861.1
UniGene:Gga.883 ProteinModelPortal:P53033 SMR:P53033 STRING:P53033
Ensembl:ENSGALT00000001980 GeneID:396542 KEGG:gga:396542
InParanoid:P53033 NextBio:20816578 Uniprot:P53033
Length = 359
Score = 132 (51.5 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 47/181 (25%), Positives = 79/181 (43%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF 506
+ GP GTGKT+ ARAL +L+ S+DRG + V N
Sbjct: 78 IIAGPPGTGKTTSILCLARALLGPALKD----AVLELNASNDRG-------IDVVRN--- 123
Query: 507 ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566
I VT P +++I + D+ D+++ + A+ + ++ + F L ++ D
Sbjct: 124 -KIKMFAQQKVTL-PKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDK 181
Query: 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626
+ I SRC + K+ D+ I+ L I KE + D L+ I + G +R A L
Sbjct: 182 IIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDGLEAIIFTAQGDMRQALNNL 241
Query: 627 E 627
+
Sbjct: 242 Q 242
>FB|FBgn0028700 [details] [associations]
symbol:RfC38 "Replication factor C 38kD subunit" species:7227
"Drosophila melanogaster" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0003689 "DNA clamp loader activity" evidence=ISS]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0022008
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AF160912 UniGene:Dm.19818
ProteinModelPortal:Q7KLW6 IntAct:Q7KLW6 STRING:Q7KLW6 PaxDb:Q7KLW6
PRIDE:Q7KLW6 FlyBase:FBgn0028700 InParanoid:Q7KLW6
OrthoDB:EOG4C2FS4 ArrayExpress:Q7KLW6 Bgee:Q7KLW6 Uniprot:Q7KLW6
Length = 395
Score = 132 (51.5 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 53/228 (23%), Positives = 101/228 (44%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
KY PR L A+ L N + L +FYGP G GK + R + +E
Sbjct: 46 KYRPRELSKLDFHKDQAENLRNLCKQSDFPHL-MFYGPSGAGKKTRIMCLLREMYGSGVE 104
Query: 474 QPKPCGFCNSCISHDRGKSRNIK-----EVGP--VGNFDFESILDLLDNMVTSRP----- 521
+ + + S+ + + + EV P G +D ++DL+ + +
Sbjct: 105 RLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIEISG 164
Query: 522 PSQYRIFVFDDCDTLSPDSWSAISKVVDR--APRRVVFILVSSSLDALPHIIISRCQKFF 579
++++ V + D L+ D+ A+ + +++ A R++ I V+S+ +P I SRC
Sbjct: 165 QREFKVIVISEGDELTKDAQHALRRTMEKYVATCRII-ISVNSTSRIIP-AIRSRCLGIR 222
Query: 580 FPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLE 627
+ +I+ LQ +EG+ + + K + +S+ +LR A + LE
Sbjct: 223 VAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLE 270
>UNIPROTKB|Q05B83 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 EMBL:BC122635 IPI:IPI00704020
RefSeq:NP_001074372.1 UniGene:Bt.35362 ProteinModelPortal:Q05B83
SMR:Q05B83 STRING:Q05B83 PRIDE:Q05B83 Ensembl:ENSBTAT00000024740
GeneID:508652 KEGG:bta:508652 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 InParanoid:Q05B83
OMA:IQCLARI OrthoDB:EOG48WC2D NextBio:20868620 ArrayExpress:Q05B83
Pfam:PF08542 Uniprot:Q05B83
Length = 352
Score = 130 (50.8 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 46/181 (25%), Positives = 79/181 (43%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF 506
+ GP GTGKT+ ARAL +L+ S+DRG + V N
Sbjct: 71 IIAGPPGTGKTTSILCLARALLGPALKD----AVLELNASNDRG-------IDVVRN--- 116
Query: 507 ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566
I VT P +++I + D+ D+++ + A+ + ++ + F L ++ D
Sbjct: 117 -KIKMFAQQKVTL-PKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDK 174
Query: 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626
+ I SRC + K+ D I+ L + KE ++ D L+ I + G +R A L
Sbjct: 175 IIEPIQSRCAVLRYTKLTDMQILARLLSVIEKEKVQYTDDGLEAIIFTAQGDMRQALNNL 234
Query: 627 E 627
+
Sbjct: 235 Q 235
>UNIPROTKB|E2QSU1 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
Ensembl:ENSCAFT00000019010 Uniprot:E2QSU1
Length = 316
Score = 127 (49.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 43/176 (24%), Positives = 77/176 (43%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF 506
+ GP GTGKT+ ARAL +L+ S+DRG + V N
Sbjct: 71 IIAGPPGTGKTTSILCLARALLGPALKD----AVLELNASNDRG-------IDVVRN--- 116
Query: 507 ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566
I VT P +++I + D+ D+++ + A+ + ++ + F L ++ D
Sbjct: 117 -KIKMFAQQKVTL-PKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDK 174
Query: 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA 622
+ I SRC + K+ DA ++ L + +E + D L+ + + G +R A
Sbjct: 175 IIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDGLEAVIFTAQGDMRQA 230
Score = 42 (19.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 314 IRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAGWVHDYSGELG 373
++++GG + R D P S ++ S +G LP + + + E G D L
Sbjct: 3 VQESGGGAGERGPQDPPPASSKAPGS--AGHYELPWVEKYRPVKLNEIVG-NEDTVSRLE 59
Query: 374 IFA 376
+FA
Sbjct: 60 VFA 62
>UNIPROTKB|F6ULR2 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 OMA:IQCLARI
Pfam:PF08542 Ensembl:ENSCAFT00000019010 EMBL:AAEX03004231
EMBL:AAEX03004232 Uniprot:F6ULR2
Length = 364
Score = 127 (49.8 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 43/176 (24%), Positives = 77/176 (43%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF 506
+ GP GTGKT+ ARAL +L+ S+DRG + V N
Sbjct: 83 IIAGPPGTGKTTSILCLARALLGPALKD----AVLELNASNDRG-------IDVVRN--- 128
Query: 507 ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566
I VT P +++I + D+ D+++ + A+ + ++ + F L ++ D
Sbjct: 129 -KIKMFAQQKVTL-PKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDK 186
Query: 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA 622
+ I SRC + K+ DA ++ L + +E + D L+ + + G +R A
Sbjct: 187 IIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDGLEAVIFTAQGDMRQA 242
Score = 44 (20.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 308 GLSDSRIRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAGWVHD 367
G ++++GG + R D P S ++ S +G LP + + + E G D
Sbjct: 9 GAGRMEVQESGGGAGERGPQDPPPASSKAPGS--AGHYELPWVEKYRPVKLNEIVG-NED 65
Query: 368 YSGELGIFA 376
L +FA
Sbjct: 66 TVSRLEVFA 74
>WB|WBGene00004339 [details] [associations]
symbol:rfc-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003677 GO:GO:0006260 GO:GO:0040011
GO:GO:0006974 GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 124 (48.7 bits), Expect = 0.00027, P = 0.00027
Identities = 45/197 (22%), Positives = 90/197 (45%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIK-----EVGP- 500
+F GP G GK + + R L +E+ + + S+ + + + + E+ P
Sbjct: 41 LFCGPSGAGKKTRIKCLLRELYGVGVEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPS 100
Query: 501 -VGNFDFESILDLLDNMV-TSRPPS----QYRIFVFDDCDTLSPDSWSAISKVVDRAPRR 554
VG +D + DL+ M TS+ S +++ V + D+L+ D+ + + +++
Sbjct: 101 DVGIYDRVVVQDLVKEMAQTSQIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANN 160
Query: 555 VVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASR 614
+L SL + + SRC P D D+ L+ + +E + ++ L+ I +
Sbjct: 161 CKIVLSCESLSRIIEPLQSRCIIINVPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEK 220
Query: 615 SDGSLRDAEMTLEQLSL 631
S+G+LR A + E L +
Sbjct: 221 SEGNLRRAILMTEALRM 237
>UNIPROTKB|Q18547 [details] [associations]
symbol:rfc-3 "Protein RFC-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792 GO:GO:0040010
GO:GO:0003677 GO:GO:0006260 GO:GO:0040011 GO:GO:0006974
GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 124 (48.7 bits), Expect = 0.00027, P = 0.00027
Identities = 45/197 (22%), Positives = 90/197 (45%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIK-----EVGP- 500
+F GP G GK + + R L +E+ + + S+ + + + + E+ P
Sbjct: 41 LFCGPSGAGKKTRIKCLLRELYGVGVEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPS 100
Query: 501 -VGNFDFESILDLLDNMV-TSRPPS----QYRIFVFDDCDTLSPDSWSAISKVVDRAPRR 554
VG +D + DL+ M TS+ S +++ V + D+L+ D+ + + +++
Sbjct: 101 DVGIYDRVVVQDLVKEMAQTSQIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANN 160
Query: 555 VVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASR 614
+L SL + + SRC P D D+ L+ + +E + ++ L+ I +
Sbjct: 161 CKIVLSCESLSRIIEPLQSRCIIINVPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEK 220
Query: 615 SDGSLRDAEMTLEQLSL 631
S+G+LR A + E L +
Sbjct: 221 SEGNLRRAILMTEALRM 237
>TAIR|locus:2015233 [details] [associations]
symbol:RFC2 "replication factor C 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 EMBL:AC010795 HOGENOM:HOG000224155 Pfam:PF08542
OMA:TMELYSN HSSP:Q8U4J3 EMBL:BT031353 IPI:IPI00535046 PIR:B96657
RefSeq:NP_176504.1 UniGene:At.36170 ProteinModelPortal:Q9CAM7
SMR:Q9CAM7 STRING:Q9CAM7 PaxDb:Q9CAM7 PRIDE:Q9CAM7
EnsemblPlants:AT1G63160.1 GeneID:842620 KEGG:ath:AT1G63160
TAIR:At1g63160 InParanoid:Q9CAM7 PhylomeDB:Q9CAM7
ProtClustDB:PLN03025 Genevestigator:Q9CAM7 Uniprot:Q9CAM7
Length = 333
Score = 106 (42.4 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 43/181 (23%), Positives = 76/181 (41%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF 506
+ GP GTGKT+ I A A + N+ S DRG + V N
Sbjct: 52 ILSGPPGTGKTTS--ILALAHELLGTNYKEAVLELNA--SDDRG-------IDVVRN--- 97
Query: 507 ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566
I VT PP ++++ + D+ D+++ + A+ + ++ F L ++
Sbjct: 98 -KIKMFAQKKVTL-PPGRHKVVILDEADSMTSGAQQALRRTIEIYSNSTRFALACNTSAK 155
Query: 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626
+ I SRC F ++ D I+ L + + E + + L+ I +DG +R A L
Sbjct: 156 IIEPIQSRCALVRFSRLSDQQILGRLLVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNL 215
Query: 627 E 627
+
Sbjct: 216 Q 216
Score = 61 (26.5 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 22/75 (29%), Positives = 31/75 (41%)
Query: 394 SGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLL-YVFYGPH 452
S + GD G ++ +KY P D+VG L V+ R + + GP
Sbjct: 3 SSSSTSTGD---GYNEPWVEKYRPSKVVDIVGNEDAVSRLQ--VIARDGNMPNLILSGPP 57
Query: 453 GTGKTSCARIFARAL 467
GTGKT+ A L
Sbjct: 58 GTGKTTSILALAHEL 72
>WB|WBGene00004338 [details] [associations]
symbol:rfc-2 species:6239 "Caenorhabditis elegans"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260
GO:GO:0040011 GO:GO:0000003 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
OMA:IQCLARI Pfam:PF08542 EMBL:FO080408 PIR:D88638
RefSeq:NP_500069.1 HSSP:Q8U4J3 ProteinModelPortal:O44175 SMR:O44175
DIP:DIP-26649N IntAct:O44175 MINT:MINT-1044481 STRING:O44175
PaxDb:O44175 EnsemblMetazoa:F58F6.4 GeneID:176946
KEGG:cel:CELE_F58F6.4 UCSC:F58F6.4 CTD:176946 WormBase:F58F6.4
InParanoid:O44175 NextBio:894694 Uniprot:O44175
Length = 334
Score = 100 (40.3 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 21/107 (19%), Positives = 50/107 (46%)
Query: 521 PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFF 580
P +++I + D+ D+++ + A+ + ++ + F L + + + I SRC +
Sbjct: 105 PEGRHKIIILDEADSMTDGAQQALRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRY 164
Query: 581 PKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLE 627
K+ ++ ++ +A E + D L+ I + G +R A L+
Sbjct: 165 TKLSPVQLLTRVKEVAKAEKVNYDDGGLEAILFTAQGDMRQALNNLQ 211
Score = 67 (28.6 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+KY P+ D+VG + + L V + V GP G GKT+ AR L
Sbjct: 14 EKYRPKVLADIVGNENIVERLKVIGHEGNVPNI-VLSGPPGCGKTTSVWALAREL 67
>TIGR_CMR|CBU_0500 [details] [associations]
symbol:CBU_0500 "DNA polymerase III, delta prime subunit"
species:227377 "Coxiella burnetii RSA 493" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR004622 InterPro:IPR015199
Pfam:PF09115 GO:GO:0003677 GO:GO:0006260 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0008408 GO:GO:0003887 GO:GO:0009360
KO:K02341 TIGRFAMs:TIGR00678 HSSP:P28631 RefSeq:NP_819534.1
ProteinModelPortal:Q83E34 GeneID:1208384 KEGG:cbu:CBU_0500
PATRIC:17929691 HOGENOM:HOG000192592 OMA:EMSTSAQ
ProtClustDB:PRK05707 BioCyc:CBUR227377:GJ7S-497-MONOMER
Uniprot:Q83E34
Length = 319
Score = 119 (46.9 bits), Expect = 0.00077, P = 0.00077
Identities = 46/207 (22%), Positives = 92/207 (44%)
Query: 450 GPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVG---NFDF 506
G G GK A+ A + C++ + CG C C G + ++ P N
Sbjct: 30 GSPGLGKFDFAKAVAEFILCEA-QDGGVCGSCRGCQLFRAGNHPDFFKLIPEEKSKNIKI 88
Query: 507 ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566
I +L++ + + Y++ + + ++ + +A K ++ ++ IL+S A
Sbjct: 89 AQIRELMNALNQTAQHDGYQVAIIYPAEAMNRAAANAFLKTLEEPCGQIFLILISHQPGA 148
Query: 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDK-DALKLIASRSDGSLRDAEMT 625
L I+SRCQ+ F + T+QW+ + IE D+ +A++L+ + S L+
Sbjct: 149 LLPTILSRCQRLAFTASANEP---TVQWLQKQ--IEGDRREAIQLLTAASYAPLQ----A 199
Query: 626 LEQLSLLGQRISVPLVQELVGLISDEK 652
L+ SL + L+Q ++ L + +
Sbjct: 200 LQLKSLNYTEVRDRLLQLIINLTAQRE 226
>GENEDB_PFALCIPARUM|PF14_0601 [details] [associations]
symbol:PF14_0601 "replication factor C3"
species:5833 "Plasmodium falciparum" [GO:0005663 "DNA replication
factor C complex" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 127 (49.8 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 52/220 (23%), Positives = 97/220 (44%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P D++ V + V + ++ L + +GP GTGKTS I A C+ L
Sbjct: 17 EKYRPNVLNDIISHEQVISTIKRFVQKGELPHL-LLHGPPGTGKTST--ILAV---CKEL 70
Query: 473 EQPKPCGFCNSC-ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
K F S DRG + I++ + F ES N T+ + ++ + D
Sbjct: 71 YGDKRSSFVLELNASDDRGINV-IRD--QIKTFA-ES-----KNHYTTCEKTTLKLIILD 121
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+ D ++ + +A+ ++++ + V F L+ + ++ + I SRC F F +K +
Sbjct: 122 EADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNK 181
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL 631
IA E + + + + + G +R L+ +SL
Sbjct: 182 ALDIAKSENVNLTEGGIDSLIRVGHGDMRRILNCLQVVSL 221
Score = 37 (18.1 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 908 FRSHLTKSKAEKFKDQILQAFESVL 932
F S+L K KD ++ +ESVL
Sbjct: 263 FVSNLQYDKGYSTKDIMMCLYESVL 287
>UNIPROTKB|Q8IKK4 [details] [associations]
symbol:PF14_0601 "Replication factor C3" species:36329
"Plasmodium falciparum 3D7" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 127 (49.8 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 52/220 (23%), Positives = 97/220 (44%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P D++ V + V + ++ L + +GP GTGKTS I A C+ L
Sbjct: 17 EKYRPNVLNDIISHEQVISTIKRFVQKGELPHL-LLHGPPGTGKTST--ILAV---CKEL 70
Query: 473 EQPKPCGFCNSC-ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
K F S DRG + I++ + F ES N T+ + ++ + D
Sbjct: 71 YGDKRSSFVLELNASDDRGINV-IRD--QIKTFA-ES-----KNHYTTCEKTTLKLIILD 121
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+ D ++ + +A+ ++++ + V F L+ + ++ + I SRC F F +K +
Sbjct: 122 EADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNK 181
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL 631
IA E + + + + + G +R L+ +SL
Sbjct: 182 ALDIAKSENVNLTEGGIDSLIRVGHGDMRRILNCLQVVSL 221
Score = 37 (18.1 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 908 FRSHLTKSKAEKFKDQILQAFESVL 932
F S+L K KD ++ +ESVL
Sbjct: 263 FVSNLQYDKGYSTKDIMMCLYESVL 287
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.380 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1152 1068 0.00085 123 3 11 22 0.42 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 92
No. of states in DFA: 623 (66 KB)
Total size of DFA: 454 KB (2215 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 95.15u 0.12s 95.27t Elapsed: 00:00:05
Total cpu time: 95.16u 0.12s 95.28t Elapsed: 00:00:05
Start: Fri May 10 07:06:00 2013 End: Fri May 10 07:06:05 2013