BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036794
(1152 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224116784|ref|XP_002317391.1| predicted protein [Populus trichocarpa]
gi|222860456|gb|EEE98003.1| predicted protein [Populus trichocarpa]
Length = 1190
Score = 1576 bits (4082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 852/1227 (69%), Positives = 948/1227 (77%), Gaps = 112/1227 (9%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSR 60
MT+AVR RILKDANGDI DHLRNHIHLTNCIHLKNHM K SPILADRS++RDL+ LQRSR
Sbjct: 1 MTKAVRTRILKDANGDIGDHLRNHIHLTNCIHLKNHMLKQSPILADRSLIRDLIALQRSR 60
Query: 61 SLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQIPNFV 120
SLRDPSASPPSWHSPSVVDLLPKKGD D IREGR SVG ERRR+ RL GSS N
Sbjct: 61 SLRDPSASPPSWHSPSVVDLLPKKGDTDATIREGRSSVGTERRREGRRLFGSSSPSANLA 120
Query: 121 TSKVAPVN-------GVAGVEIEMI------------EELGEKN------------LVER 149
SKV P + GVA + I EE +K+ L ++
Sbjct: 121 PSKVVPSDVSGGNNDGVAAISDRSINSGFRDGRRVKREESSKKSNRVNQLGGDGDPLQDQ 180
Query: 150 A--GLIF---------------WKGRQTQDVRVKTLSEQLHDIPMDSDDLISSNVQFCGS 192
A GLI KG+ +QDV +KTLSEQLH+IPMD+D + SSN+ G
Sbjct: 181 AVDGLIHDTVSGNSESKDRKSKHKGKHSQDVHIKTLSEQLHEIPMDTD-VASSNMHLHGR 239
Query: 193 RSGLEKTGEEHGGIRGYSNGLHRVKRRKFRGARRAR-TASALRDVGGQSEMSVASNSLAQ 251
+ EK E IRGY G+HRV+RRKFR RR R +A A RDVGGQ EMSVASNS AQ
Sbjct: 240 HTRQEKIVEPETSIRGY-GGVHRVRRRKFRSTRRTRASAPASRDVGGQKEMSVASNSFAQ 298
Query: 252 GLACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSD 311
G A P+YHMEEE EYG++NVTRAPRNGCGIPWNWS IHHRGKT LD+AGRSL SCGLSD
Sbjct: 299 GSARPRYHMEEE--EYGDQNVTRAPRNGCGIPWNWSGIHHRGKTILDIAGRSL-SCGLSD 355
Query: 312 SRIRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQ-STEHAGWVHDYSG 370
+R K ASH R+ P MP+ SDRSSSST S EALPLLVEASGSQ ST++AGWVHDYSG
Sbjct: 356 TR--KGSTASHGRDFPGMPVASDRSSSSTKSDVEALPLLVEASGSQESTDNAGWVHDYSG 413
Query: 371 ELGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVA 430
ELGI+ADHLLK+ +DSDLASE RSG Q+ LG N+NGRHQNLTQ+YMPRTFRDLVGQNL A
Sbjct: 414 ELGIYADHLLKNDIDSDLASEARSGEQRKLGRNQNGRHQNLTQRYMPRTFRDLVGQNLAA 473
Query: 431 QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490
QALSNA +RRKVG LYVFYGPHGTGKTSCARIF+RALNCQSLE PKPCG+CNSCISHD G
Sbjct: 474 QALSNAAVRRKVGFLYVFYGPHGTGKTSCARIFSRALNCQSLEHPKPCGYCNSCISHDMG 533
Query: 491 KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR 550
KSRNI+EVGPV NFDF+SI+DLLDNM+ S+ PSQYR+F+FDDCDTL+PD WSAISKV+DR
Sbjct: 534 KSRNIREVGPVSNFDFKSIIDLLDNMIISQTPSQYRVFIFDDCDTLAPDCWSAISKVIDR 593
Query: 551 APRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKL 610
APRRVVF+LV SSLD LPHIIISRCQKFFFPK+KDADIIYTLQWI+SKE I+IDKDALKL
Sbjct: 594 APRRVVFVLVCSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQWISSKEDIDIDKDALKL 653
Query: 611 IASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVK 670
IASRSDGSLRDAEMTLEQLSLLGQ+ISVPLVQELVGLISDEKLVDLLDLA+SADTVNTVK
Sbjct: 654 IASRSDGSLRDAEMTLEQLSLLGQKISVPLVQELVGLISDEKLVDLLDLAISADTVNTVK 713
Query: 671 NLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQAL 730
NLRVIMETGVEPLALMSQLATVITDILAGSYDFTK+R RRKFFRR PLSK++MEKLRQAL
Sbjct: 714 NLRVIMETGVEPLALMSQLATVITDILAGSYDFTKERPRRKFFRRNPLSKDDMEKLRQAL 773
Query: 731 KTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMT 790
KTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQY+LPSSS +TSF+HSPL L N GGR +
Sbjct: 774 KTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYLLPSSSTETSFNHSPLALNNMGGRDIA 833
Query: 791 RKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMA----- 845
RKGGER E+ N + G+ +VRLEN S +F + GI++DRKR+ SGMA
Sbjct: 834 RKGGERVEMPNNKRGLSTHVRLENLPGGTSANFQNSGSTNGINMDRKRNAASGMASQWTS 893
Query: 846 LQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQ 905
+Q + GR VSG SR G EEIWLEVL +IQ N +EFLY+EGKLISVSFGAAPTVQ
Sbjct: 894 VQTSDAVRVNGRQVSGKSRKGHEEIWLEVLEKIQINSMREFLYQEGKLISVSFGAAPTVQ 953
Query: 906 LTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGS 965
L F SHLTK KAEKF+ ILQAFESVLGSP+TIEIRCE +T AGFHLP ASK GS
Sbjct: 954 LIFSSHLTKLKAEKFRAHILQAFESVLGSPVTIEIRCELNKETNAGFHLP---AASKIGS 1010
Query: 966 SQMVIDSESIIGNRGPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPA 1025
SQM +DSE G+R P G +SLE GR+EIVE+PA
Sbjct: 1011 SQMAMDSEPNAGSRMPRTG--------------------------DSLE-GRSEIVEIPA 1043
Query: 1026 SPR--ETKDHAENRADYSKR------------------ASLSERKKLGEQSQCQSIVRSK 1065
SPR E + A + + S+R S+ ER+ LGE SQ +SIVRSK
Sbjct: 1044 SPRKYEGNEPANHNVESSRRGLQRTWAGESVSNKKPAMGSMVERRILGEPSQSKSIVRSK 1103
Query: 1066 VSLAHVIQQAEGCTQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICR 1125
VSLAHVIQQAEGCTQ+ WSK KAVSIAEKLEQENLRLEPRSRSLLCWKA++VTRRK+ R
Sbjct: 1104 VSLAHVIQQAEGCTQQAEWSKHKAVSIAEKLEQENLRLEPRSRSLLCWKATRVTRRKLSR 1163
Query: 1126 LKIRRRKPLSLLKLVSCGKCLSSKSPR 1152
+KIR RKP SLLKLVSCGKCLSSK PR
Sbjct: 1164 MKIRTRKPRSLLKLVSCGKCLSSKPPR 1190
>gi|224079031|ref|XP_002305724.1| predicted protein [Populus trichocarpa]
gi|222848688|gb|EEE86235.1| predicted protein [Populus trichocarpa]
Length = 1188
Score = 1548 bits (4008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 840/1227 (68%), Positives = 935/1227 (76%), Gaps = 114/1227 (9%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSR 60
MT+AVR RILKDANGDI DHLRNHIHLTNCIHLKNHM K SPILADRS+MRDL+ LQRSR
Sbjct: 1 MTKAVRTRILKDANGDIGDHLRNHIHLTNCIHLKNHMLKQSPILADRSLMRDLITLQRSR 60
Query: 61 SLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQIPNFV 120
SLRDPSASPPSWHSPSVVDLLPKKGD D IREGR SVG ERRR+ RLSG+SP + N
Sbjct: 61 SLRDPSASPPSWHSPSVVDLLPKKGDPDAAIREGRSSVGTERRREGRRLSGTSPPLANLA 120
Query: 121 TSKVAP------VNGVAGVEIEMI-------------EEL-----------GEKNLVERA 150
SKV P ++GVA + + EE G+++L++
Sbjct: 121 PSKVVPSDISLGIDGVAAISDRSVKSGIRDGRRVVTREEFSRKSNRADLLGGDEDLLQDH 180
Query: 151 GLIFW------------------KGRQTQDVRVKTLSEQLHDIPMDSDDLISSNVQFCGS 192
+ + KG+ +QD+ +KTLSEQL++IP SD + SSN+ G
Sbjct: 181 AVNSFIHEAVSGNSESKDRKSKHKGKHSQDMHIKTLSEQLNEIPRGSD-VASSNMHLHGR 239
Query: 193 RSGLEKTGEEHGGIRGYSNGLHRVKRRKFRGARRARTASALR-DVGGQSEMSVASNSLAQ 251
+ +K GE + GYS G++RVKRRKFR ARR R A+ D GGQ EMSVASNS AQ
Sbjct: 240 HTQQQKIGEHETSVSGYS-GVNRVKRRKFRNARRTRAAAPASRDAGGQKEMSVASNSFAQ 298
Query: 252 GLACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSD 311
G A P+YHMEEE EYG++NVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRS SCGLSD
Sbjct: 299 GPAQPRYHMEEE--EYGDQNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSF-SCGLSD 355
Query: 312 SRIRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGS-QSTEHAGWVHDYSG 370
SR + G SH R+ P MP+ SD S+SST S EALPLLVEASGS +ST++AGWVHDYSG
Sbjct: 356 SR--RDGTFSHGRDFPGMPVASDHSTSSTKSDVEALPLLVEASGSHESTDNAGWVHDYSG 413
Query: 371 ELGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVA 430
ELGI+ADHLLK+ VDS E RS Q LG N NGRHQNLTQKYMPRTFRDLVGQNLVA
Sbjct: 414 ELGIYADHLLKNDVDS----EARSSEQCKLGQNHNGRHQNLTQKYMPRTFRDLVGQNLVA 469
Query: 431 QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490
QALSNAV RRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE PKPCGFCNSCISHD G
Sbjct: 470 QALSNAVSRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEHPKPCGFCNSCISHDMG 529
Query: 491 KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR 550
KSRNI+EVGPV NFDFESI+DLLDNM+ + PS YR+F+FDDCD+LSPD WSAI KV+DR
Sbjct: 530 KSRNIREVGPVSNFDFESIMDLLDNMIVYQIPSLYRVFIFDDCDSLSPDCWSAILKVIDR 589
Query: 551 APRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKL 610
APRRVVF+LV SSLD LPHIIISRCQKFFFPK+KDADIIYTLQWI+SKE I+IDKDALKL
Sbjct: 590 APRRVVFVLVCSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQWISSKEDIDIDKDALKL 649
Query: 611 IASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVK 670
IASRSDGSLRDAEMTLEQLSLLGQ+ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVK
Sbjct: 650 IASRSDGSLRDAEMTLEQLSLLGQKISVPLVQELVGLISDEKLVDLLDLALSADTVNTVK 709
Query: 671 NLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQAL 730
NLRVIMETGVEPLALMSQLATVITDILAGSYDFTK+R RRKFFRR+PLSKE+MEKLRQAL
Sbjct: 710 NLRVIMETGVEPLALMSQLATVITDILAGSYDFTKERPRRKFFRRKPLSKEDMEKLRQAL 769
Query: 731 KTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMT 790
KTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQY+LPSSS +TSF+HSPL N GGR ++
Sbjct: 770 KTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYLLPSSSTETSFNHSPLAQNNMGGRDIS 829
Query: 791 RKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMA----- 845
RKGGE E+ N +PM+VRLE+ S DF + G S+DRKR+ S MA
Sbjct: 830 RKGGEH-EMPNNGRDLPMHVRLESLPGGTSADFRNNGSTNGTSIDRKRNAASVMAPQWTP 888
Query: 846 LQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQ 905
+Q + R VSG S G EEIWLEVL +IQ N +EFLY+EGKLISVSFGAAPTVQ
Sbjct: 889 VQTSDAIRVNSRQVSGKSHKGYEEIWLEVLEKIQINSMREFLYQEGKLISVSFGAAPTVQ 948
Query: 906 LTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGS 965
L F SH TK KAEKF+ ILQAFESVLGSP+TIEIRCES +T AGF +PL+LPASK+GS
Sbjct: 949 LIFSSHFTKLKAEKFRAHILQAFESVLGSPVTIEIRCESNKETSAGFRVPLILPASKNGS 1008
Query: 966 SQMVIDSESIIGNRGPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPA 1025
SQM ID G+R P G + LE GR+EIVEVP
Sbjct: 1009 SQMAIDPVLNAGSRMPRTG--------------------------DYLE-GRSEIVEVPT 1041
Query: 1026 SPR--ETKDHAENRADYSKR------------------ASLSERKKLGEQSQCQSIVRSK 1065
SPR E + + + S+R SL ER+KLGE SQ +SIVRSK
Sbjct: 1042 SPRKYEGNEPTNHNVESSRRGLQHTRAGESVSNKKPAVGSLVERRKLGETSQSKSIVRSK 1101
Query: 1066 VSLAHVIQQAEGCTQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICR 1125
VSLA VIQQAEGCTQ+ GWSK KAVSIAEKLEQENLRLEPRSR LLCWKA++VTRRK+ R
Sbjct: 1102 VSLARVIQQAEGCTQQAGWSKHKAVSIAEKLEQENLRLEPRSRCLLCWKATRVTRRKLSR 1161
Query: 1126 LKIRRRKPLSLLKLVSCGKCLSSKSPR 1152
L IR RKP SLLKLVSCGKCLSSKSPR
Sbjct: 1162 LNIRTRKPHSLLKLVSCGKCLSSKSPR 1188
>gi|225443722|ref|XP_002265273.1| PREDICTED: uncharacterized protein LOC100249702 [Vitis vinifera]
Length = 1161
Score = 1548 bits (4008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 824/1224 (67%), Positives = 925/1224 (75%), Gaps = 135/1224 (11%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSR 60
MTRAVR RILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDL+VLQRSR
Sbjct: 1 MTRAVRDRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLIVLQRSR 60
Query: 61 SLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQIPNFV 120
SLRDPS SPPSWHSPSV+DLL KK +ND + REGRRSVGIERRR+ RLSGSSP + +
Sbjct: 61 SLRDPSTSPPSWHSPSVIDLLSKKVENDAVSREGRRSVGIERRREGRRLSGSSPTVASLA 120
Query: 121 TSKVAP------VNGVAGVE---------------------------------------- 134
TSKVAP NG+A +
Sbjct: 121 TSKVAPGEVVGGNNGIAAMSERSGKSGLRDGRRIKREESSRRSMRTDLLGGYEEPSQDQD 180
Query: 135 -IEMIEELGEKNLVERAGLIFWKGRQTQDVRVKTLSEQLHDIPMDSDDLISSNVQFCGSR 193
+ + EL N + + KG+ Q+V +KTLSEQL + P+DSD SS++ G R
Sbjct: 181 GNDSVNELVSGNSESKDKRVKQKGKLRQEVLLKTLSEQLKEFPVDSD-AASSHIHLQGRR 239
Query: 194 SGLEKTGEE-HGGIRGYSNGLHRVKRRKFRGARRARTASALRDVGGQSEMSVASNSLAQG 252
+ E+TGEE IRGY +GL+R+K+RKFRGARR R A LRD+G Q+E+SVASNS AQG
Sbjct: 240 TRKERTGEEPEASIRGYCSGLNRIKKRKFRGARRNRAAIGLRDIGAQNELSVASNSFAQG 299
Query: 253 LACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDS 312
C K MEEE EEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSL SCGLSDS
Sbjct: 300 SVCLKNEMEEEREEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSL-SCGLSDS 358
Query: 313 RIRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQ-STEHAGWVHDYSGE 371
R+R+ G R+V DMP+ SD SS+ST S AEALPLLVEASGSQ STE+A WVHDYSGE
Sbjct: 359 RLRRGGSVPQGRDVSDMPMASDHSSASTKSDAEALPLLVEASGSQESTENAAWVHDYSGE 418
Query: 372 LGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQ 431
LGIFAD+LL+H +DSDLASE RSG Q+ R RHQNLTQKYMPRTF LVGQNLVAQ
Sbjct: 419 LGIFADNLLRHDIDSDLASEARSGDQRKFRGYRQDRHQNLTQKYMPRTFGGLVGQNLVAQ 478
Query: 432 ALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK 491
ALSNAV++RKVG LYVFYGPHGTGKTSCARIFARALNC S+E PKPCGFCNSCI+HD GK
Sbjct: 479 ALSNAVVKRKVGFLYVFYGPHGTGKTSCARIFARALNCPSMEHPKPCGFCNSCIAHDMGK 538
Query: 492 SRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA 551
SRNI+EVGPV N DFE I++LLDN++ S+ P+QYR+F+FDDCDTLSPD WSAISK++DRA
Sbjct: 539 SRNIREVGPVSNLDFEGIMNLLDNVIASQLPTQYRVFIFDDCDTLSPDCWSAISKLIDRA 598
Query: 552 PRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLI 611
PRR+VF+LVSS+LD LPHIIISRCQKFFFPK+KDADIIYTLQWIA+KE +EIDKDALKLI
Sbjct: 599 PRRMVFVLVSSTLDVLPHIIISRCQKFFFPKLKDADIIYTLQWIATKEDLEIDKDALKLI 658
Query: 612 ASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKN 671
ASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKN
Sbjct: 659 ASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKN 718
Query: 672 LRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALK 731
LR IMETGVEPLALMSQLATVITDILAGSYDFTK+R RRKFFRRQ LSKE+MEKLRQALK
Sbjct: 719 LREIMETGVEPLALMSQLATVITDILAGSYDFTKERLRRKFFRRQALSKEDMEKLRQALK 778
Query: 732 TLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTR 791
TLSEAEKQLRMSNDKLTWLTAALLQLAPDQQY+LPSSSADTSF+HSPL
Sbjct: 779 TLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYMLPSSSADTSFNHSPL------------ 826
Query: 792 KGGERAEISNKETGVPMNVRLENFHAEN-SGDFIDGNMRKGISLDRKRHTGSGMALQQKS 850
VP N + SG I G +RK I
Sbjct: 827 --------------VPNNSSAHSADTNRLSGKQIPGKVRKEI------------------ 854
Query: 851 PLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRS 910
EEIWLEVL +IQ + KEFLY+EGKLISVS GAAPTVQL F S
Sbjct: 855 -----------------EEIWLEVLEKIQVDTLKEFLYKEGKLISVSIGAAPTVQLMFSS 897
Query: 911 HLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVI 970
HLTKSKAEK++ IL+AFES+LGSP+TIEIR ES+ D +AG H+PL+ A+KD SQMV
Sbjct: 898 HLTKSKAEKYRGHILRAFESILGSPVTIEIRSESRKDAKAGAHVPLIFSAAKDLPSQMVT 957
Query: 971 DSESIIGNRGPMAGPIEISKRIPRDEGIN-GASSQAQQLHSESLEMGRTEIVEVPASPRE 1029
+ +I NR AG +I++R+P+D + G S+Q Q L++ SLEMGR+EIVE+ SPRE
Sbjct: 958 NRGNITDNRRHQAGYDDINQRVPKDRDFHGGGSAQGQLLNANSLEMGRSEIVEILPSPRE 1017
Query: 1030 TK--DHAENRADYSKR-------------------ASLSERKKLGEQSQCQSIVRSKVSL 1068
K DH +N K AS+ ER+K GEQS QS+VRSKVSL
Sbjct: 1018 LKSNDHVDNNVQSDKTGLESSWAGEASSSHRKSTMASVPERRKFGEQSHSQSLVRSKVSL 1077
Query: 1069 AHVIQQAEGCTQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICRLKI 1128
AHVIQQAEGC+QR+GW+KRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRK+ R KI
Sbjct: 1078 AHVIQQAEGCSQRSGWTKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKLSRFKI 1137
Query: 1129 RRRKPLSLLKLVSCGKCLSSKSPR 1152
R R+P SLLKLVSCGKCLSSKSPR
Sbjct: 1138 RTRRPHSLLKLVSCGKCLSSKSPR 1161
>gi|255562516|ref|XP_002522264.1| replication factor C / DNA polymerase III gamma-tau subunit, putative
[Ricinus communis]
gi|223538517|gb|EEF40122.1| replication factor C / DNA polymerase III gamma-tau subunit, putative
[Ricinus communis]
Length = 1105
Score = 1518 bits (3931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 824/1222 (67%), Positives = 904/1222 (73%), Gaps = 187/1222 (15%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSR 60
MT+AVR RILKDANG ISDHLRNHIHLTNCIHLKNHMHK SPILADRS+MRDL+VLQRSR
Sbjct: 1 MTKAVRNRILKDANGHISDHLRNHIHLTNCIHLKNHMHKQSPILADRSLMRDLIVLQRSR 60
Query: 61 SLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQIPNFV 120
SLRDPSASPPSWHSPSVVDLLPKKGD D + EGRRS+GIERRR+ RLSG SP N
Sbjct: 61 SLRDPSASPPSWHSPSVVDLLPKKGDKDAAVTEGRRSIGIERRREGRRLSGGSPPFANLA 120
Query: 121 TSKVAP------VNGVA--------------GVEIEMIEEL----------GEKNLV--- 147
SKV P GVA G I+ E G+++L
Sbjct: 121 PSKVVPGELSGGYEGVAAAVSDRSSKSGARDGRRIKREESSRKSNRADLLGGDEDLSHNQ 180
Query: 148 ERAGLIF---------------WKGRQTQDVRVKTLSEQLHDIPMDSDDLISSNVQFCGS 192
E GL+ KG+ +QD +KTLS+QL++IPMDSD SSNV G
Sbjct: 181 EVNGLVNDDVSGNSESKSRKSKHKGKHSQDFHIKTLSDQLNEIPMDSDVAASSNVHLHGR 240
Query: 193 RSGLEKTGEE-HGGIRGYSNGLHRVKRRKFRGARRARTASALRDVGGQSEMSVASNSLAQ 251
RS +KTGEE IRGYS G++R KRRKFRGARR R A+ RDV GQ+EMSVASNSL Q
Sbjct: 241 RSQQDKTGEERETSIRGYS-GINRTKRRKFRGARRTR-ATPARDVEGQNEMSVASNSLNQ 298
Query: 252 GLACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSD 311
G P+Y +EEE EYG+ NVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSL SCGLSD
Sbjct: 299 GSVRPRYCIEEE--EYGDPNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSL-SCGLSD 355
Query: 312 SRIRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQ-STEHAGWVHDYSG 370
SR+RK G ASH R+ P+MPL SD S SST S AEALPLLVEAS SQ ST++AGWVHDYSG
Sbjct: 356 SRLRKGGMASHDRDAPNMPLASDYSCSSTKSDAEALPLLVEASLSQESTDNAGWVHDYSG 415
Query: 371 ELGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVA 430
ELGI+ADHLLK+ VDSDLASE RSGGQ L N N RHQN TQKYMPRTFRDLVGQNLVA
Sbjct: 416 ELGIYADHLLKNDVDSDLASEARSGGQHKLRRNHNSRHQNFTQKYMPRTFRDLVGQNLVA 475
Query: 431 QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490
QALSNAV+RRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE PKPCG+CNSCISHD G
Sbjct: 476 QALSNAVVRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEHPKPCGYCNSCISHDMG 535
Query: 491 KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR 550
KSRNI+EVGPV NFDF +I+DLLDNM+ S PSQYR+F+FD CDTLS D WSAISKV+DR
Sbjct: 536 KSRNIREVGPVSNFDFGNIVDLLDNMIISHLPSQYRVFIFDGCDTLSSDCWSAISKVIDR 595
Query: 551 APRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKL 610
APRRVVF+LVSSSLD LPHIIISRCQKFFFPK+KDADIIYTLQWIASKE I+IDKDALKL
Sbjct: 596 APRRVVFVLVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQWIASKEDIDIDKDALKL 655
Query: 611 IASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVK 670
IASRSDGSLRDA+MTLEQLSLLG +ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVK
Sbjct: 656 IASRSDGSLRDAQMTLEQLSLLGLKISVPLVQELVGLISDEKLVDLLDLALSADTVNTVK 715
Query: 671 NLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQAL 730
+LRVIMETGVEPLALMSQLATVITDILAGSY+FTK+RHRRKFFRRQPLSKE+MEKLRQAL
Sbjct: 716 HLRVIMETGVEPLALMSQLATVITDILAGSYNFTKERHRRKFFRRQPLSKEDMEKLRQAL 775
Query: 731 KTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMT 790
KTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQY+LPSSS +TSF+H T
Sbjct: 776 KTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYMLPSSSTETSFNHK------------T 823
Query: 791 RKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKS 850
+ A + +T VR+ +G + G RKG
Sbjct: 824 GVAPQWASALSSDT-----VRI-------NGKQVSGKTRKG------------------- 852
Query: 851 PLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRS 910
EEIWLEV+ +IQ N KEFLY+EGKLISVSFGAAPTVQL F S
Sbjct: 853 ----------------YEEIWLEVIGKIQFNSIKEFLYQEGKLISVSFGAAPTVQLMFSS 896
Query: 911 HLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVI 970
HLTK KAEKF+ ILQAFESV GS +T+EIRCES D GFHLP
Sbjct: 897 HLTKLKAEKFRAHILQAFESVFGSQITLEIRCESNRDMTGGFHLP--------------- 941
Query: 971 DSESIIGNRGPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPASPRET 1030
AG ESL++GR+EIVE+PASPRE
Sbjct: 942 ------------AG--------------------------ESLDVGRSEIVEIPASPREI 963
Query: 1031 K--DHAENRADYSKRA------------------SLSERKKLGEQSQCQSIVRSKVSLAH 1070
K HA+N A+ SKRA S+SER+KLGE SQ +S+VRSKVSLAH
Sbjct: 964 KGSGHADNDAESSKRALQRARAGESVSHKNSSIGSMSERRKLGEPSQSKSLVRSKVSLAH 1023
Query: 1071 VIQQAEGCTQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICRLKIRR 1130
VIQQAEGCTQ+ GWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKAS+VTRRK+ RLKIR
Sbjct: 1024 VIQQAEGCTQQTGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRVTRRKLSRLKIRT 1083
Query: 1131 RKPLSLLKLVSCGKCLSSKSPR 1152
RKP +LLKLVSCGKC+SSKSPR
Sbjct: 1084 RKPHALLKLVSCGKCISSKSPR 1105
>gi|356557765|ref|XP_003547181.1| PREDICTED: uncharacterized protein LOC100793832 [Glycine max]
Length = 1191
Score = 1485 bits (3844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 801/1227 (65%), Positives = 919/1227 (74%), Gaps = 111/1227 (9%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSR 60
MTRAVR R+LKDANGDISDHLRNHIHLTNCIHLKNHMHK+SPILADRSIMRDL+VLQRSR
Sbjct: 1 MTRAVRSRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSR 60
Query: 61 SLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQIPNFV 120
SLRDPSASPPSWHSPSVVDLL K+ +ND + + GRRS+G+ERR++ RLSG+SP + +
Sbjct: 61 SLRDPSASPPSWHSPSVVDLLFKRVENDAVSQGGRRSIGVERRKEGRRLSGTSPPLVSIG 120
Query: 121 TSKVAP---VNGVAGVEIEMI---------------EELGEKN----------------- 145
+S+VAP V G G+ EE G KN
Sbjct: 121 SSRVAPGEIVRGNDGITAPSERSSRSGMGDGRRVGREESGRKNDRPDFLDVNPEEPLNQA 180
Query: 146 ---LVE---------RAGLIFWKGRQTQDVRVKTLSEQLHDIPMDSDDLISSNVQFCGSR 193
L E +A +G+ QD +VKTLSEQL+D+P+DSDDL SSN+ F G
Sbjct: 181 GKSLAEDVISRHSESKARKSKQRGKNVQDAQVKTLSEQLNDVPLDSDDLASSNIHFRGRF 240
Query: 194 SGLEKTGEE-HGGIRGYSNGLHRVKRRKFRGARRARTASALRDVGGQSEMSVASNSLAQG 252
EK +E +R + +G++R KRRKFR ARR R A+ RD+ ++E+SVASNSLAQ
Sbjct: 241 PRQEKIIKEVEARMRSHGSGMNRGKRRKFRSARRTRVATTSRDIVAENELSVASNSLAQA 300
Query: 253 LACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDS 312
KYH+EE DE + + NVTRAP+NGCGIPWNWSRIHHRGKTFLDMAGRSL SCGLSDS
Sbjct: 301 SVHHKYHLEEADE-FADENVTRAPKNGCGIPWNWSRIHHRGKTFLDMAGRSL-SCGLSDS 358
Query: 313 RIRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQ-STEHAGWVHDYSGE 371
R++K A++ RN+ +MP+ S+RSSS T S AEALPLLVEASGS STE+A W H YSGE
Sbjct: 359 RLKKGTFAANGRNISEMPVASERSSSCTRSDAEALPLLVEASGSHASTENACWDHYYSGE 418
Query: 372 LGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQ 431
LG+F D+L KH VDSDLASE RSG Q+ L NR+ RHQ+LTQKYMPRTFRD+VGQNLVAQ
Sbjct: 419 LGLFGDNLFKHDVDSDLASEARSGDQRKLRGNRHSRHQSLTQKYMPRTFRDMVGQNLVAQ 478
Query: 432 ALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK 491
ALSNAVM++KVGLLYVFYGPHGTGKTS ARIFARALNC S E PKPCGFCN C++HD GK
Sbjct: 479 ALSNAVMKKKVGLLYVFYGPHGTGKTSSARIFARALNCNSSEHPKPCGFCNYCVAHDMGK 538
Query: 492 SRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA 551
SRNI+EVGPV NFDFESI++LLDNM+ S+ PS YR+F+FDDCDTLS D W+AISKV+DRA
Sbjct: 539 SRNIREVGPVSNFDFESIMELLDNMIVSQLPSHYRVFIFDDCDTLSTDCWNAISKVIDRA 598
Query: 552 PRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLI 611
PRRVVFILVSSSLD LPHIIISRCQKFFFPK+KDADIIYTL+WIA+KEG+EIDKDALKLI
Sbjct: 599 PRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLEWIATKEGLEIDKDALKLI 658
Query: 612 ASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKN 671
ASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKN
Sbjct: 659 ASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKN 718
Query: 672 LRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALK 731
LRVIMETGVEPLALMSQLATVITDILAG+YDF KDR RRKFFRR LSKE+MEKLRQALK
Sbjct: 719 LRVIMETGVEPLALMSQLATVITDILAGTYDFRKDRRRRKFFRRPLLSKEDMEKLRQALK 778
Query: 732 TLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTR 791
TLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLP+SS D SF+HSP L++A R R
Sbjct: 779 TLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSS-DNSFNHSPFALKDADAREAAR 837
Query: 792 KGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSP 851
G +I NK + M+ R+EN HA +S D M +G+ ++KRH+ SG Q +
Sbjct: 838 LTGNPVDIPNKGRRLSMDARIENVHAGSSAD----GMTRGLGSEKKRHSVSGFTPQHANS 893
Query: 852 -----LSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQL 906
+ R + G +R IEEIWLEVL RIQ G KEFL++EGKLISVSFGAAPTVQL
Sbjct: 894 QATEKIRMSERQILGINRTKIEEIWLEVLERIQITGLKEFLFKEGKLISVSFGAAPTVQL 953
Query: 907 TFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSS 966
F S LTKS AEKF+ ILQAFESVLGS +TIEIRCE DT + PL LP++ D SS
Sbjct: 954 MFSSQLTKSTAEKFRGHILQAFESVLGSSITIEIRCELNKDTASAVQQPLTLPSTNDSSS 1013
Query: 967 QMVIDSESIIGNRGPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPAS 1026
Q+ RD NG + A ++S+E R EIVE AS
Sbjct: 1014 QI-------------------------RD--FNGVGTLAHPSVTDSVEKRRGEIVEEAAS 1046
Query: 1027 PRETKDHAENRADYSK-----------RASLSERK----------KLGEQSQCQSIVRSK 1065
E K+ + + ++S S++K KL EQ Q +S+VRSK
Sbjct: 1047 QVEQKNSKQQVDAHGTSYKSLEGTSIGQSSASQKKPIVKSHLDQRKLMEQGQSRSLVRSK 1106
Query: 1066 VSLAHVIQQAEGCTQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICR 1125
VSLAHVIQQAEG QR+GWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKAS+VTRRK+ R
Sbjct: 1107 VSLAHVIQQAEG--QRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRVTRRKLSR 1164
Query: 1126 LKIRRRKPLSLLKLVSCGKCLSSKSPR 1152
LKIR RKP +LL LVSCGKCLS+KSPR
Sbjct: 1165 LKIRSRKPRALLNLVSCGKCLSTKSPR 1191
>gi|357447087|ref|XP_003593819.1| DNA polymerase III subunit gamma/tau [Medicago truncatula]
gi|355482867|gb|AES64070.1| DNA polymerase III subunit gamma/tau [Medicago truncatula]
Length = 1177
Score = 1452 bits (3760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 772/1233 (62%), Positives = 895/1233 (72%), Gaps = 137/1233 (11%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSR 60
MTRA+R R+LKDANGDISDH+RNHIHLTNCIHLKNHMHK+SPI+ADRSIMRDL+VLQRSR
Sbjct: 1 MTRAIRNRVLKDANGDISDHIRNHIHLTNCIHLKNHMHKNSPIIADRSIMRDLVVLQRSR 60
Query: 61 SLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLS--GSSPQIPN 118
SLRDPSASPPSWHSPSVVDLL K+ DNDG + GRRSVG + R++ +LS G+SP + +
Sbjct: 61 SLRDPSASPPSWHSPSVVDLLFKRADNDGASQGGRRSVGNDSRKEGGKLSKIGNSPPLVS 120
Query: 119 FVTSKVAPVNGVAGVEI--------------------------------EMIEELGEKNL 146
TS+VAP G G + + +E ++ L
Sbjct: 121 KGTSRVAPGEGSRGNDAVPAATSERSSRSGIGNGRRVGREESGRKSNRPDYLEVTSQEQL 180
Query: 147 VERAGLIF-----------------WKGRQTQDVRVKTLSEQLHDIPMDSDDLISSNVQF 189
+ AG +G+ QDV+ KTLSEQLHD+P+DSDDL SSN+ F
Sbjct: 181 LHEAGKSLAEDVVSRHSQSIERKSRQRGKNVQDVQAKTLSEQLHDVPLDSDDLASSNIHF 240
Query: 190 CGSRSGLEKTGEE--HGGIRGYSNGLHRVKRRKFRGARRARTASALRDVGGQSEMSVASN 247
EK E+ +R ++NG++R+KRRKFR R+AR A+ RD+G ++E+SVASN
Sbjct: 241 RARFRRQEKIIEQAQQASVRSHANGMNRIKRRKFRSTRKARVATTSRDIGAENELSVASN 300
Query: 248 SLAQGLACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSC 307
SL +G A KYH EE D Y + NVTRAP+NGCG+PWNWSRIHHRGKTFLD+AGRSL SC
Sbjct: 301 SLPEGSAHQKYHSEEVDN-YADDNVTRAPKNGCGMPWNWSRIHHRGKTFLDIAGRSL-SC 358
Query: 308 GLSDSRIRKAGG-ASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQ-STEHAGWV 365
GLSDSR++K S+ RN+ MP+ +D S S TNS AEALPLLV+ASGS STE+A W
Sbjct: 359 GLSDSRLKKGRSLTSNGRNISVMPVAADDSCSCTNSEAEALPLLVDASGSHGSTENACWG 418
Query: 366 HDYSGELGIFADHLLKHAVDSDLASEGRSGGQQN-LGDNRNGRHQNLTQKYMPRTFRDLV 424
H YSGELGI+ D+L K +DSDLASE RSG Q N L N + RHQ+LTQKY+PRTFRD+V
Sbjct: 419 HGYSGELGIYGDNLFKQDIDSDLASEARSGSQHNKLRRNHHSRHQSLTQKYIPRTFRDMV 478
Query: 425 GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484
GQNLVAQALSNAV RRKVGLLYVFYGPHGTGKTSCARIFARALNC S E PKPCGFCN C
Sbjct: 479 GQNLVAQALSNAVSRRKVGLLYVFYGPHGTGKTSCARIFARALNCSSSEHPKPCGFCNYC 538
Query: 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAI 544
I+HD GKSRNI+EVGPV NFDFE+I+DLLDNM+ S+ PSQYR+F+FDDCD+LS D W+AI
Sbjct: 539 IAHDMGKSRNIREVGPVSNFDFENIMDLLDNMIVSQLPSQYRVFIFDDCDSLSADCWNAI 598
Query: 545 SKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEID 604
SKV+DRAPRRVVFILVS+SLD LPHIIISRCQKFFFPK+KD+DI+YTL IA+KEG++ID
Sbjct: 599 SKVIDRAPRRVVFILVSTSLDVLPHIIISRCQKFFFPKLKDSDIVYTLHGIATKEGLDID 658
Query: 605 KDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSAD 664
KDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSAD
Sbjct: 659 KDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSAD 718
Query: 665 TVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEME 724
TVNTVKNLRVIME GVEPLALMSQLATVITDILAG+YDFTK+R RRKFFRRQPLSKE+ME
Sbjct: 719 TVNTVKNLRVIMEAGVEPLALMSQLATVITDILAGTYDFTKERCRRKFFRRQPLSKEDME 778
Query: 725 KLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENA 784
KLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQY LP+SS D SF+HSP L N
Sbjct: 779 KLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYGLPTSS-DNSFNHSPFALNNG 837
Query: 785 GGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGM 844
+ TR G EI N+ + M+ R+E+ +A +S D +RH+ SG
Sbjct: 838 NVKEATRNTGNPVEILNRTRRMSMDARMESSNAGSSAD--------------RRHSLSGY 883
Query: 845 ALQQKSPLSA-----GGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFG 899
A Q S R S +R I+EIWLEVL RI G KEFLY+ GKLI +SFG
Sbjct: 884 APQHTYSHSTDKTRINERQTSDRNRKEIDEIWLEVLERIHYPGLKEFLYKAGKLIFISFG 943
Query: 900 AAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLP 959
AAPTVQL F S L+KS AEKF ILQAFESVLGS +TIEIRCE+ D + LPL+LP
Sbjct: 944 AAPTVQLMFNSQLSKSTAEKFTGHILQAFESVLGSSVTIEIRCEANKDAGSPVQLPLVLP 1003
Query: 960 ASKDGSSQMVIDSESIIGNRGPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTE 1019
+ DGSSQ+ RD L+ E R+E
Sbjct: 1004 SINDGSSQV-------------------------RD------------LNDVGTEKRRSE 1026
Query: 1020 IVEVPASPRETKDH---AENRADYSKRASLSE-----------------RKKLGEQSQCQ 1059
IVE AS E K++ + A Y + S R+KL EQSQ +
Sbjct: 1027 IVEEEASHMEHKNNEQQVDGHATYKNQDGTSMGQVLASQKVPIVKSHLVRRKLSEQSQSR 1086
Query: 1060 SIVRSKVSLAHVIQQAEGCTQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVT 1119
S+V+SKVSLAHVIQ+AEG QR+GWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKAS+ T
Sbjct: 1087 SLVKSKVSLAHVIQRAEG--QRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRAT 1144
Query: 1120 RRKICRLKIRRRKPLSLLKLVSCGKCLSSKSPR 1152
RRK+ RLKIR +K +LL LVSCGKCL++KSPR
Sbjct: 1145 RRKLSRLKIRTQKTHALLNLVSCGKCLATKSPR 1177
>gi|449433559|ref|XP_004134565.1| PREDICTED: uncharacterized protein LOC101212118 [Cucumis sativus]
Length = 1120
Score = 1425 bits (3688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 758/1210 (62%), Positives = 875/1210 (72%), Gaps = 152/1210 (12%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSR 60
MTRAVR RILK+ANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRS+MRDL+VLQRSR
Sbjct: 1 MTRAVRDRILKEANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSLMRDLIVLQRSR 60
Query: 61 SLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQIPNFV 120
SLRDPSASPPSW SPS+ DL + G+N+ +IREGRRSVG E RR +SGSSP + +F
Sbjct: 61 SLRDPSASPPSWQSPSITDLPSRMGENNVVIREGRRSVGTESRRVGRTISGSSPPLGSFA 120
Query: 121 TSKVAPV------NGVAGV-------EI------------------EMIEELGEKNLVER 149
TSKVAP +GV V EI +++ E + V
Sbjct: 121 TSKVAPAEVNVGADGVTAVSEHSVKSEIRDGRRIRREESSRRSDRNSVLDGNEESSPVHD 180
Query: 150 AGLIF---------------WKGRQTQDVRVKTLSEQLHDIPMDSDDLISSNVQFCGSRS 194
A L+ K +Q + + KTLSEQL+ P+DSDD+ SS+ G RS
Sbjct: 181 AHLLHEVISRKSESKDRKSEQKDKQVRSIPFKTLSEQLNSAPIDSDDIASSSA-VHGRRS 239
Query: 195 GLEKTGEE-HGGIRGYSNGLHRVKRRKFRGARRARTASALRDVGGQSEMSVASNSLAQGL 253
E+ +E RG +GL+R KRRKFRG RR+R RD G Q+E+SVASN+LA G
Sbjct: 240 QQERIADEPEPSFRGNCSGLNRGKRRKFRGTRRSRMNLTSRDTGVQNELSVASNTLAHGS 299
Query: 254 ACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDSR 313
A K+ MEEE+E YG +NV PRNGCG+PWNWSRIHHRGK+FLDMAGRS SCG+SDS
Sbjct: 300 AHSKHKMEEENENYGNKNVIGGPRNGCGMPWNWSRIHHRGKSFLDMAGRSF-SCGISDSM 358
Query: 314 IRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQ-STEHAGWVHDYSGEL 372
+RK + R + P+ SD SSSS AEALPLLVEASGSQ S E+AGW DYSGEL
Sbjct: 359 LRKCSPTARGRGISGTPIASDHSSSSAKFDAEALPLLVEASGSQESIENAGWQRDYSGEL 418
Query: 373 GIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQA 432
GIFAD+ +KH VDSDLASE R ++ + RHQNLTQKYMPRTF+DLVGQ+LVAQA
Sbjct: 419 GIFADNYIKHEVDSDLASEARCSNRRRTRGHHRARHQNLTQKYMPRTFKDLVGQHLVAQA 478
Query: 433 LSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS 492
LSNAV+R+KVGLLYVFYGPHGTGKTSCARIFARALNCQSLE KPCG CNSC+ +D GKS
Sbjct: 479 LSNAVLRKKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEHSKPCGLCNSCVGYDMGKS 538
Query: 493 RNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP 552
RNI+EV PV N DFESI +LLD+M+ S+ PSQY +F+FDDCD+ S + WSAI+KV+DRAP
Sbjct: 539 RNIREVVPVSNLDFESITELLDHMIASQLPSQYTVFIFDDCDSFSANCWSAITKVIDRAP 598
Query: 553 RRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIA 612
RR+VF+LV SSLD LPHIIISRCQKFFFPK+KDAD+I+TLQWIA++E +EIDKDALKLI
Sbjct: 599 RRLVFVLVCSSLDVLPHIIISRCQKFFFPKLKDADVIHTLQWIATQENLEIDKDALKLIT 658
Query: 613 SRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNL 672
SRSDGSLRDAEMTLEQLSLLGQRISVPL+QELVGLISDEKLVDLLDLALSADTVNTVK+L
Sbjct: 659 SRSDGSLRDAEMTLEQLSLLGQRISVPLIQELVGLISDEKLVDLLDLALSADTVNTVKHL 718
Query: 673 RVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKT 732
R+I+E+GVEP+ALMSQ+ATVITDILAGSYDF K+R RRKFFRRQPLSKE+MEKLRQALKT
Sbjct: 719 RLIIESGVEPMALMSQIATVITDILAGSYDFKKERPRRKFFRRQPLSKEDMEKLRQALKT 778
Query: 733 LSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRK 792
LSEAEKQLRMSNDKLTWLTAALLQLAPDQQY+L SSSA+TSF+HSPL L N GR
Sbjct: 779 LSEAEKQLRMSNDKLTWLTAALLQLAPDQQYLL-SSSAETSFNHSPLALNNVSGR----- 832
Query: 793 GGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPL 852
GISLDRKRH+G
Sbjct: 833 --------------------------------------GISLDRKRHSG----------- 843
Query: 853 SAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHL 912
VSG + +EEIWLEVL +I+ N KEFL +EG L SVSFGAAPTV+L F SH
Sbjct: 844 ------VSGTTHKAMEEIWLEVLGKIRMNSIKEFLIQEGTLASVSFGAAPTVRLIFNSHN 897
Query: 913 TKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVIDS 972
KSKAEK ++QILQAFES LGS + IEIR ESK DT G H + LPASK+G Q+
Sbjct: 898 AKSKAEKLREQILQAFESALGSSVIIEIRYESKRDTLVGNHSSVTLPASKNGLLQI---- 953
Query: 973 ESIIGNRGPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPASPRETKD 1032
RD I+G SQAQ H S E+GR EIVE+ ASPRE +
Sbjct: 954 ---------------------RD--ISGNMSQAQLTHYGSGEVGRGEIVEIDASPREANN 990
Query: 1033 HAE-NRADY-------------SKRASLSERKKLGEQSQCQSIVRSKVSLAHVIQQAEGC 1078
E N+ + S +S+SER++ G QS+ QSIVRSKVSLAHVIQQAEGC
Sbjct: 991 QREPNQRNLEGSQGEVSVSRKNSTMSSISERREAGAQSRSQSIVRSKVSLAHVIQQAEGC 1050
Query: 1079 TQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICRLKIRRRKPLSLLK 1138
+QR+GWS RKAVSIAEKLEQENLRLEP+SRSLLCWKAS+VTRRK+ RLK+R R+P SLLK
Sbjct: 1051 SQRSGWSTRKAVSIAEKLEQENLRLEPQSRSLLCWKASRVTRRKLSRLKVRTRRPQSLLK 1110
Query: 1139 LVSCGKCLSS 1148
LVSCGKCLS+
Sbjct: 1111 LVSCGKCLSA 1120
>gi|449479207|ref|XP_004155535.1| PREDICTED: uncharacterized protein LOC101226355 [Cucumis sativus]
Length = 1120
Score = 1424 bits (3686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 758/1210 (62%), Positives = 875/1210 (72%), Gaps = 152/1210 (12%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSR 60
MTRAVR RILK+ANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRS+MRDL+VLQRSR
Sbjct: 1 MTRAVRDRILKEANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSLMRDLIVLQRSR 60
Query: 61 SLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQIPNFV 120
SLRDPSASPPSW SPS+ DL + G+N+ +IREGRRSVG E RR +SGSSP + +F
Sbjct: 61 SLRDPSASPPSWQSPSITDLPSRMGENNVVIREGRRSVGTESRRVGRTISGSSPPLGSFA 120
Query: 121 TSKVAPV------NGVAGV-------EI------------------EMIEELGEKNLVER 149
TSKVAP +GV V EI +++ E + V
Sbjct: 121 TSKVAPAEVNVGADGVTAVSEHSVKSEIRDGRRIRREESSRRSDRNSVLDGNEESSPVHD 180
Query: 150 AGLIF---------------WKGRQTQDVRVKTLSEQLHDIPMDSDDLISSNVQFCGSRS 194
A L+ K +Q + + KTLSEQL+ P+DSDD+ SS+ G RS
Sbjct: 181 AHLLHEVISRKSESKDRKSEQKDKQVRSIPFKTLSEQLNSAPIDSDDIASSSA-VHGRRS 239
Query: 195 GLEKTGEE-HGGIRGYSNGLHRVKRRKFRGARRARTASALRDVGGQSEMSVASNSLAQGL 253
E+ +E RG +GL+R KRRKFRG RR+R RD G Q+E+SVASN+LA G
Sbjct: 240 QQERIADEPEPSFRGNCSGLNRGKRRKFRGTRRSRMNLTSRDTGVQNELSVASNTLAHGS 299
Query: 254 ACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDSR 313
A K+ MEEE+E YG +NV PRNGCG+PWNWSRIHHRGK+FLDMAGRS SCG+SDS
Sbjct: 300 AHSKHKMEEENENYGNKNVIGGPRNGCGMPWNWSRIHHRGKSFLDMAGRSF-SCGISDSM 358
Query: 314 IRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQ-STEHAGWVHDYSGEL 372
+RK + R + P+ SD SSSS AEALPLLVEASGSQ S E+AGW DYSGEL
Sbjct: 359 LRKCSPTARGRGISGTPIASDHSSSSAKFDAEALPLLVEASGSQESIENAGWQLDYSGEL 418
Query: 373 GIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQA 432
GIFAD+ +KH VDSDLASE R ++ + RHQNLTQKYMPRTF+DLVGQ+LVAQA
Sbjct: 419 GIFADNYIKHEVDSDLASEARCSNRRRTRGHHRSRHQNLTQKYMPRTFKDLVGQHLVAQA 478
Query: 433 LSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS 492
LSNAV+R+KVGLLYVFYGPHGTGKTSCARIFARALNCQSLE KPCG CNSC+ +D GKS
Sbjct: 479 LSNAVLRKKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEHSKPCGLCNSCVGYDMGKS 538
Query: 493 RNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP 552
RNI+EV PV N DFESI +LLD+M+ S+ PSQY +F+FDDCD+ S + WSAI+KV+DRAP
Sbjct: 539 RNIREVVPVSNLDFESITELLDHMIASQLPSQYTVFIFDDCDSFSANCWSAITKVIDRAP 598
Query: 553 RRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIA 612
RR+VF+LV SSLD LPHIIISRCQKFFFPK+KDAD+I+TLQWIA++E +EIDKDALKLI
Sbjct: 599 RRLVFVLVCSSLDVLPHIIISRCQKFFFPKLKDADVIHTLQWIATQENLEIDKDALKLIT 658
Query: 613 SRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNL 672
SRSDGSLRDAEMTLEQLSLLGQRISVPL+QELVGLISDEKLVDLLDLALSADTVNTVK+L
Sbjct: 659 SRSDGSLRDAEMTLEQLSLLGQRISVPLIQELVGLISDEKLVDLLDLALSADTVNTVKHL 718
Query: 673 RVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKT 732
R+I+E+GVEP+ALMSQ+ATVITDILAGSYDF K+R RRKFFRRQPLSKE+MEKLRQALKT
Sbjct: 719 RLIIESGVEPMALMSQIATVITDILAGSYDFKKERPRRKFFRRQPLSKEDMEKLRQALKT 778
Query: 733 LSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRK 792
LSEAEKQLRMSNDKLTWLTAALLQLAPDQQY+L SSSA+TSF+HSPL L N GR
Sbjct: 779 LSEAEKQLRMSNDKLTWLTAALLQLAPDQQYLL-SSSAETSFNHSPLALNNVSGR----- 832
Query: 793 GGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPL 852
GISLDRKRH+G
Sbjct: 833 --------------------------------------GISLDRKRHSG----------- 843
Query: 853 SAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHL 912
VSG + +EEIWLEVL +I+ N KEFL +EG L SVSFGAAPTV+L F SH
Sbjct: 844 ------VSGTTHKAMEEIWLEVLGKIRMNSIKEFLIQEGTLASVSFGAAPTVRLIFNSHN 897
Query: 913 TKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVIDS 972
KSKAEK ++QILQAFES LGS + IEIR ESK DT G H + LPASK+G Q+
Sbjct: 898 AKSKAEKLREQILQAFESALGSSVIIEIRYESKRDTLVGNHSSVTLPASKNGLLQI---- 953
Query: 973 ESIIGNRGPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPASPRETKD 1032
RD I+G SQAQ H S E+GR EIVE+ ASPRE +
Sbjct: 954 ---------------------RD--ISGNMSQAQLTHYGSGEVGRGEIVEIDASPREANN 990
Query: 1033 HAE-NRADY-------------SKRASLSERKKLGEQSQCQSIVRSKVSLAHVIQQAEGC 1078
E N+ + S +S+SER++ G QS+ QSIVRSKVSLAHVIQQAEGC
Sbjct: 991 QREPNQRNLEGSQGEVSVSRKNSTMSSISERREAGAQSRSQSIVRSKVSLAHVIQQAEGC 1050
Query: 1079 TQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICRLKIRRRKPLSLLK 1138
+QR+GWS RKAVSIAEKLEQENLRLEP+SRSLLCWKAS+VTRRK+ RLK+R R+P SLLK
Sbjct: 1051 SQRSGWSTRKAVSIAEKLEQENLRLEPQSRSLLCWKASRVTRRKLSRLKVRTRRPQSLLK 1110
Query: 1139 LVSCGKCLSS 1148
LVSCGKCLS+
Sbjct: 1111 LVSCGKCLSA 1120
>gi|307136186|gb|ADN34025.1| DNA polymerase III gamma-tau subunit [Cucumis melo subsp. melo]
Length = 1170
Score = 1393 bits (3605), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 740/1175 (62%), Positives = 860/1175 (73%), Gaps = 102/1175 (8%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSR 60
MTRAVR RILK+ANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRS+MRDL+VLQRSR
Sbjct: 1 MTRAVRDRILKEANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSLMRDLIVLQRSR 60
Query: 61 SLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQIPNFV 120
SLRDPSASPPSW SPS+ DL + G+N+ +IREGRRSVG E RR +SGSSP + +F
Sbjct: 61 SLRDPSASPPSWQSPSITDLPSRMGENNAVIREGRRSVGTESRRVGRTISGSSPPLGSFA 120
Query: 121 TSKVAP--VN-GVAGV----------EI------------------EMIEELGEKNLVER 149
TSKVAP VN G GV EI +++ E + V
Sbjct: 121 TSKVAPAEVNVGTDGVTAASEHSVKSEIRDGRRIRREESSRRSDRNSVLDGNEESSPVHD 180
Query: 150 AGLIF---------------WKGRQTQDVRVKTLSEQLHDIPMDSDDLISSNVQFCGSRS 194
A L+ K +Q + + KTLSEQL+ P+DSDD+ SS+ G RS
Sbjct: 181 AHLLHEIISRKSESKDRKSEQKDKQVRSIPFKTLSEQLNSAPIDSDDIASSSA-VHGRRS 239
Query: 195 GLEK-TGEEHGGIRGYSNGLHRVKRRKFRGARRARTASALRDVGGQSEMSVASNSLAQGL 253
EK T E RG +GL+RVKRRKFRG RR+R RD G Q+E+SVASN+LA G
Sbjct: 240 QQEKITDEPEPSFRGNCSGLNRVKRRKFRGTRRSRMNVTSRDTGVQNELSVASNTLAHGS 299
Query: 254 ACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDSR 313
K+ MEEE+E Y +NV PRNGCG+PWNWSRIHHRGK+FLDMAGRS SCG+SDS
Sbjct: 300 VHSKHKMEEENENYANKNVIGGPRNGCGMPWNWSRIHHRGKSFLDMAGRSF-SCGISDSM 358
Query: 314 IRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQ-STEHAGWVHDYSGEL 372
+RK + R + P+ SD SSSS AEALPLLVEASGSQ S E+AGW DYSGEL
Sbjct: 359 LRKCSPTARGRGISGTPIASDHSSSSAKFDAEALPLLVEASGSQESIENAGWQRDYSGEL 418
Query: 373 GIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQA 432
GIFAD+ +KH VDSDLASE R ++ + RHQNLTQKYMPRTF+DLVGQ+LVAQA
Sbjct: 419 GIFADNYIKHEVDSDLASEARCSNRRRTRGHHRSRHQNLTQKYMPRTFKDLVGQHLVAQA 478
Query: 433 LSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS 492
LSNAV+++KVGLLYVFYGPHGTGKTSCARIFARALNCQSLE KPCG CNSC+ +D GKS
Sbjct: 479 LSNAVLKKKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEHSKPCGLCNSCVGYDMGKS 538
Query: 493 RNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP 552
RNI+EV PV N DFESI +LLD+M+ S+ PSQY +F+FDDCD+ S + WSAI+KV+DRAP
Sbjct: 539 RNIREVVPVSNLDFESITELLDHMIASQLPSQYTVFIFDDCDSFSANCWSAITKVIDRAP 598
Query: 553 RRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIA 612
RR+VF+LV SSLD LPHIIISRCQKFFFPK+KDAD+I+TLQWIA++E +EIDKDALKLI
Sbjct: 599 RRLVFVLVCSSLDVLPHIIISRCQKFFFPKLKDADVIHTLQWIATQENLEIDKDALKLIT 658
Query: 613 SRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNL 672
SRSDGSLRDAEMTLEQLSLLGQRISVPL+QELVGLISDEKLVDLLDLALSADTVNTVK+L
Sbjct: 659 SRSDGSLRDAEMTLEQLSLLGQRISVPLIQELVGLISDEKLVDLLDLALSADTVNTVKHL 718
Query: 673 RVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKT 732
R+I+E+GVEP+ALMSQ+ATVITDILAGSYDF K+R RRKFFRRQPLSKE+MEKLRQALKT
Sbjct: 719 RLIIESGVEPMALMSQIATVITDILAGSYDFKKERPRRKFFRRQPLSKEDMEKLRQALKT 778
Query: 733 LSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRK 792
LSEAEKQLRMSNDKLTWLTAALLQLAPDQQY+L SSSA+TSF+HSPL L N GRG +R
Sbjct: 779 LSEAEKQLRMSNDKLTWLTAALLQLAPDQQYML-SSSAETSFNHSPLALNNVSGRGASRN 837
Query: 793 GGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQ---- 848
+ +IS E G+P +V+ D D + KGISLDRKRH+G ++ Q+
Sbjct: 838 VDQHGQISAGEKGLPTDVKFAGH-----SDSFDNRISKGISLDRKRHSGVCVSPQRTIGT 892
Query: 849 -KSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLT 907
+ + G+ VSG + IEEIWLEVL +I+ N KEFL +EG L SVSFGAAPTV+L
Sbjct: 893 ATDLMKSSGKQVSGTTHKAIEEIWLEVLGKIRINSIKEFLIQEGTLASVSFGAAPTVRLI 952
Query: 908 FRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQ 967
F SH KSKAEK ++QILQAFES LGS + IEIRCESK DT G H + LP SK+G Q
Sbjct: 953 FNSHNAKSKAEKLREQILQAFESALGSSVIIEIRCESKRDTTVGNHSSVTLPVSKNGLLQ 1012
Query: 968 MVIDSESIIGNRGPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPASP 1027
+ RD I+G SQAQ H S E+GR EIVE+ ASP
Sbjct: 1013 I-------------------------RD--ISGNMSQAQLPHYGSGEVGRGEIVEIDASP 1045
Query: 1028 RETKDHAE----NRADY----------SKRASLSERKKLGEQSQCQSIVRSKVSLAHVIQ 1073
RE + E N D S +S+SER++ G QS+ QSIVRSKVSLAHVIQ
Sbjct: 1046 REAHNQREPNQRNLEDSQGEVSVSRKNSTMSSISERREAGAQSRSQSIVRSKVSLAHVIQ 1105
Query: 1074 QAEGCTQRNGWSKRKAVSIAEKLEQENLRLEPRSR 1108
QAEGC+QR+GWSKRKAVSIAEKLEQENL + SR
Sbjct: 1106 QAEGCSQRSGWSKRKAVSIAEKLEQENLYVMLSSR 1140
>gi|334186680|ref|NP_193617.3| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|332658694|gb|AEE84094.1| AAA-type ATPase family protein [Arabidopsis thaliana]
Length = 1097
Score = 1180 bits (3052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 693/1198 (57%), Positives = 826/1198 (68%), Gaps = 177/1198 (14%)
Query: 8 RILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSRSLRDPSA 67
RILKDANGDI +HLRNHIHLTNCIHLKN+MHK SP+L DR++MRDL+VLQRSRSLRDPSA
Sbjct: 21 RILKDANGDIGEHLRNHIHLTNCIHLKNNMHKQSPVLTDRALMRDLIVLQRSRSLRDPSA 80
Query: 68 SPPSWHSP-SVVDLLPKKGDNDGMIREGRRSVGIERR-RDSSRLSGSSPQIPNFVTSKVA 125
SPP+W++P SVVDLLPKKGD ++ GRRSV +++ R S LSGSSP + NF TSKV
Sbjct: 81 SPPAWNTPPSVVDLLPKKGD---LVEGGRRSVDLKKSSRRLSALSGSSPVV-NFGTSKVT 136
Query: 126 PVNGVAG-------------------VEIEMIEELGEKNLVERAGLIFWKGRQ---TQDV 163
P + +G + ++ N V G R+ D
Sbjct: 137 PSDERSGPVSGERDSGRRVKREESSRKSYRIGDDYQNVNEVVSHGSGSKASRRLSRVNDA 196
Query: 164 RVKTLSEQLHDIPMDSDDL-----ISSNVQFCGSRSGLEKTGEEHGGIRGYSNGLHRVKR 218
VKTLS+QL+++ + D + V++ G G RG + G+ R KR
Sbjct: 197 MVKTLSDQLNEVVVGDSDDVVSSNVRPRVRY--------GGGGGGGNTRGCAGGMSRPKR 248
Query: 219 RKFRGARRARTASALRDVGG-QSEMSVASNSLAQGLACPKYHMEEEDEEYGERNVTRAPR 277
RKFRG RR R S RD GG +SEMSVASN+L Q K+ + E E +GE+N+T+A
Sbjct: 249 RKFRGTRRVRGKS--RDTGGGKSEMSVASNTLPQ---VEKH--DGEKEGFGEQNMTKA-- 299
Query: 278 NGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDSRIRKAGGASHSRNVPDMPLV--SDR 335
CGIP+NWSRIHHRGKTFLD AGRSL SCG+SDS+ + G ++ RN D ++ D
Sbjct: 300 --CGIPFNWSRIHHRGKTFLDKAGRSL-SCGMSDSKGGRKG-ETNERNGSDKMMIQSDDD 355
Query: 336 SSSSTNSGAEALPLLVEASGSQSTEHAGWVHDYSGELGIFADHLLKHAVDSDLASEGRSG 395
SSS S EALPLLV+ S E+ GWVHDYSGELGIFAD LLK+ DSDLASEGRSG
Sbjct: 356 SSSFIGSDGEALPLLVD-----SGENDGWVHDYSGELGIFADSLLKNDEDSDLASEGRSG 410
Query: 396 GQQ-------NLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVF 448
++ N +HQ+LT+KY P+TFRDL+GQNLV QALSNAV RRK+GLLYVF
Sbjct: 411 EKKHKKKSHVNARHRHRQQHQSLTEKYTPKTFRDLLGQNLVVQALSNAVARRKLGLLYVF 470
Query: 449 YGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFES 508
+GP+GTGKTSCARIFARALNC S+EQPKPCG C+SC+SHD GKS NI+EVGPVGN+DFE
Sbjct: 471 HGPNGTGKTSCARIFARALNCHSMEQPKPCGTCSSCVSHDMGKSWNIREVGPVGNYDFEK 530
Query: 509 ILDLLDN--MVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-PRRVVFILVSSSLD 565
I+DLLD MV+S+ P R+F+FDDCDTLS D W+A+SKVVDRA PR VVFILV SSLD
Sbjct: 531 IMDLLDGNVMVSSQSP---RVFIFDDCDTLSSDCWNALSKVVDRAAPRHVVFILVCSSLD 587
Query: 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMT 625
LPH+IISRCQKFFFPK+KDADI+Y+LQWIASKE IEIDKDALKLIASRSDGSLRDAEMT
Sbjct: 588 VLPHVIISRCQKFFFPKLKDADIVYSLQWIASKEEIEIDKDALKLIASRSDGSLRDAEMT 647
Query: 626 LEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLAL 685
LEQLSLLGQRISVPLVQELVGL+SDEKLVDLLDLALSADTVNTVKNLR IMET VEPLAL
Sbjct: 648 LEQLSLLGQRISVPLVQELVGLVSDEKLVDLLDLALSADTVNTVKNLRTIMETSVEPLAL 707
Query: 686 MSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSND 745
MSQLATVITDILAGSYDFTKD+H+RKFFRRQPL KE+MEKLRQALKTLSEAEKQLR+SND
Sbjct: 708 MSQLATVITDILAGSYDFTKDQHKRKFFRRQPLPKEDMEKLRQALKTLSEAEKQLRVSND 767
Query: 746 KLTWLTAALLQLAPDQQYVLP-SSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKET 804
KLTWLTAALLQLAPDQ Y+L SS+ADT GGR +
Sbjct: 768 KLTWLTAALLQLAPDQNYLLQRSSTADT------------GGRESS-------------- 801
Query: 805 GVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSR 864
+ H + S D G + LDR+R S +R
Sbjct: 802 ---------DHHLDPSSDAAGG---RSSGLDRRRGD-------------------SRKNR 830
Query: 865 NGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQI 924
+EEIWLEV+ +++ NG +EFLY+EG+++S++ G+APTV L F S LTKS AEKF+ I
Sbjct: 831 PAVEEIWLEVIEKLRVNGLREFLYKEGRIVSLNLGSAPTVHLMFSSPLTKSTAEKFRSHI 890
Query: 925 LQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVIDSESIIGNRGPMAG 984
+QAFE+VL SP+TIEIRCE+K D + H P KD S + S ++IG+
Sbjct: 891 MQAFEAVLESPVTIEIRCETKKDPRNNVHHHHHHPTVKDKS---LPQSLALIGH------ 941
Query: 985 PIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPASPRETKDHAENRADY---- 1040
D I+G+ GR+EIVEV S + + + + +
Sbjct: 942 ----------DYNIDGS--------------GRSEIVEVTESNGQRRQQQKQQEEERTEP 977
Query: 1041 --SKRASLSERKKL---GEQSQCQSIVRSKVSLAHVIQQAEGCTQRNGWSKRKAVSIAEK 1095
S + + RK L Q+Q QSIVR KVSLAHVIQQA+GC+ +NGWSKRKAVSIAEK
Sbjct: 978 VGSSALARARRKHLEASQSQNQSQSIVRGKVSLAHVIQQADGCSLQNGWSKRKAVSIAEK 1037
Query: 1096 LEQENLRLEPRSRSLLCWKASKVTRRKICRLKIRRR--KPLSLLKLVSCGKCLSSKSP 1151
LEQENLRLEPRSRSLLCWK+S+ TRRK RLK+R R +P +LLKLVSCGKCLS++SP
Sbjct: 1038 LEQENLRLEPRSRSLLCWKSSRGTRRKATRLKVRTRRARPHTLLKLVSCGKCLSTRSP 1095
>gi|356549172|ref|XP_003542971.1| PREDICTED: uncharacterized protein LOC100809005 [Glycine max]
Length = 1101
Score = 1153 bits (2983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 590/825 (71%), Positives = 671/825 (81%), Gaps = 56/825 (6%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSR 60
MTRAVR R+LKDANGDISDHLRNHIHLTNCIHLKNHMHK+SPILADRSIMRDL+VLQRSR
Sbjct: 1 MTRAVRSRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSR 60
Query: 61 SLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQIPNFV 120
SLRDPSASPPSWHSPSVVDLL K+ +ND + + GR SVG ERR++ RLSG+SP + +
Sbjct: 61 SLRDPSASPPSWHSPSVVDLLFKRVENDAVSQGGRMSVGAERRKEGRRLSGTSPPLVSIG 120
Query: 121 TSKVAP------VNGVAG------------------------------VEIEMIEEL--G 142
+S+VAP +G+ +++ E L G
Sbjct: 121 SSRVAPGEIGRGNDGITAPSERSSRSGLGDGRRVGREESGRKNDRPDFLDVNPEEPLYQG 180
Query: 143 EKNLVE---------RAGLIFWKGRQTQDVRVKTLSEQLHDIPMDSDDLISSNVQFCGSR 193
K+L E +A +G+ +D +VKTLSEQL+D+P+DSDDL SSN+ F G
Sbjct: 181 GKSLAEDVISRHSESKARKSKQRGKNVRDAQVKTLSEQLNDVPLDSDDLASSNIHFRGRF 240
Query: 194 SGLEKTGEE-HGGIRGYSNGLHRVKRRKFRGARRARTASALRDVGGQSEMSVASNSLAQG 252
EK EE +R + +G+++ KRRKFR RR R A+ RD+G ++E+SVASNSLA
Sbjct: 241 PRQEKVIEEVESRMRSHGSGMNKGKRRKFRSVRRTRVATTSRDIGAENEISVASNSLAHH 300
Query: 253 LACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDS 312
KYH+EE DE + + NVTRAP+NGCGIPWNWSRIHHRGKTFLD+AGRSL SCGLSDS
Sbjct: 301 ----KYHLEEADE-FADENVTRAPKNGCGIPWNWSRIHHRGKTFLDLAGRSL-SCGLSDS 354
Query: 313 RIRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQ-STEHAGWVHDYSGE 371
R++K ++ RN+ +MP+ S+RSSS T S AEALPLLVEASGS STE+A W HDYSGE
Sbjct: 355 RLKKGTFTANGRNISEMPVASERSSSCTKSDAEALPLLVEASGSHASTENACWDHDYSGE 414
Query: 372 LGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQ 431
LG+F D+L KH VDSDLASE RSG Q+ L NR+ RHQ+LTQKYMP+TFRD++GQNLVAQ
Sbjct: 415 LGLFGDNLFKHDVDSDLASEARSGDQRKLRGNRHSRHQSLTQKYMPQTFRDMIGQNLVAQ 474
Query: 432 ALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK 491
ALSNAVM+RKVGLLYVFYGPHGTGKTSCARIFARALNC S E PKPCGFCN C++HD GK
Sbjct: 475 ALSNAVMKRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCNYCVAHDMGK 534
Query: 492 SRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA 551
SRNI+EVGPV NFDFE I+DLLDNM S+ PS YR+F+FDDCDTLS D W+AISKV+DR
Sbjct: 535 SRNIREVGPVSNFDFEGIMDLLDNMTLSQLPSHYRVFIFDDCDTLSTDCWNAISKVIDRV 594
Query: 552 PRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLI 611
PRRVVFILVSSSLD LPHIIISRCQKFFFPK+KDADIIYTLQWIA+KEG+EIDKDALKLI
Sbjct: 595 PRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQWIATKEGLEIDKDALKLI 654
Query: 612 ASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKN 671
ASRSDGSLRDAEMTLEQLSLLGQRISVPL+QELVGLISDEKLVDLLDLALSADTVNTVKN
Sbjct: 655 ASRSDGSLRDAEMTLEQLSLLGQRISVPLIQELVGLISDEKLVDLLDLALSADTVNTVKN 714
Query: 672 LRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALK 731
LRVIMETGVEPLALMSQLATVITDILAG+YDFTK+R RRKFFRRQPLSKE+MEKLRQALK
Sbjct: 715 LRVIMETGVEPLALMSQLATVITDILAGTYDFTKERRRRKFFRRQPLSKEDMEKLRQALK 774
Query: 732 TLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSH 776
TLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLP+SS D SF+H
Sbjct: 775 TLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSS-DNSFNH 818
Score = 282 bits (722), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 171/309 (55%), Positives = 197/309 (63%), Gaps = 60/309 (19%)
Query: 857 RHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSK 916
R + G + IEEIWLEVL RIQ G KEFL++EGKLISVSFGAAPTVQL F S LTKS
Sbjct: 840 RQILGKNHKEIEEIWLEVLERIQVTGLKEFLFKEGKLISVSFGAAPTVQLMFSSQLTKST 899
Query: 917 AEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVIDSESII 976
AEKF+ ILQAFESVLGS +TIEIRCE D + PL ++S+
Sbjct: 900 AEKFRGHILQAFESVLGSSITIEIRCELNKDAASAVQQPL---------------TDSVE 944
Query: 977 GNRGPMAGPIEISKRIPRDEGINGASSQAQQLHSE-----------SLEMGRTEIVEVPA 1025
RG E + A+SQ + ++SE SLE T I + A
Sbjct: 945 KRRG---------------EIVEEAASQVEHMNSEQQVDAHGTSYKSLEG--TSIGQSSA 987
Query: 1026 SPRE--TKDHAENRADYSKRASLSERKKLGEQSQCQSIVRSKVSLAHVIQQAEGCTQRNG 1083
S + K H + R KL EQ Q +S+VRSKVSLAHVIQQAEG QR+G
Sbjct: 988 SQKMPIVKSHLDER-------------KLMEQGQSRSLVRSKVSLAHVIQQAEG--QRSG 1032
Query: 1084 WSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICRLKIRRRKPLSLLKLVSCG 1143
WSKRKAVSIAEKLEQENLRLEPRSRSL+CWKAS+VTRRK+ RLKIR RKP +LL LVSCG
Sbjct: 1033 WSKRKAVSIAEKLEQENLRLEPRSRSLICWKASRVTRRKLSRLKIRSRKPRALLNLVSCG 1092
Query: 1144 KCLSSKSPR 1152
KCLS+KSPR
Sbjct: 1093 KCLSTKSPR 1101
>gi|4539401|emb|CAB37467.1| putative protein [Arabidopsis thaliana]
gi|7268676|emb|CAB78884.1| putative protein [Arabidopsis thaliana]
Length = 1057
Score = 1097 bits (2838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 655/1160 (56%), Positives = 781/1160 (67%), Gaps = 189/1160 (16%)
Query: 8 RILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSRSLRDPSA 67
RILKDANGDI +HLRNHIHLTNCIHLKN+MHK SP+L DR++MRDL+VLQRSRSLRDPSA
Sbjct: 21 RILKDANGDIGEHLRNHIHLTNCIHLKNNMHKQSPVLTDRALMRDLIVLQRSRSLRDPSA 80
Query: 68 SPPSWHSP-SVVDLLPKKGDNDGMIREGRRSVGIERR-RDSSRLSGSSPQIPNFVTSKVA 125
SPP+W++P SVVDLLPKKGD ++ GRRSV +++ R S LSGSSP + NF TSKV
Sbjct: 81 SPPAWNTPPSVVDLLPKKGD---LVEGGRRSVDLKKSSRRLSALSGSSPVV-NFGTSKVT 136
Query: 126 PVNGVAG-------------------VEIEMIEELGEKNLVERAGLIFWKGRQ---TQDV 163
P + +G + ++ N V G R+ D
Sbjct: 137 PSDERSGPVSGERDSGRRVKREESSRKSYRIGDDYQNVNEVVSHGSGSKASRRLSRVNDA 196
Query: 164 RVKTLSEQLHDIPMDSDDL-----ISSNVQFCGSRSGLEKTGEEHGGIRGYSNGLHRVKR 218
VKTLS+QL+++ + D + V++ G G RG + G+ R KR
Sbjct: 197 MVKTLSDQLNEVVVGDSDDVVSSNVRPRVRY--------GGGGGGGNTRGCAGGMSRPKR 248
Query: 219 RKFRGARRARTASALRDVGG-QSEMSVASNSLAQGLACPKYHMEEEDEEYGERNVTRAPR 277
RKFRG RR R S RD GG +SEMSVASN+L Q K+ + E E +GE+N+T+A
Sbjct: 249 RKFRGTRRVRGKS--RDTGGGKSEMSVASNTLPQ---VEKH--DGEKEGFGEQNMTKA-- 299
Query: 278 NGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDSRIRKAGGASHSRNVPDMPLV--SDR 335
CGIP+NWSRIHHRGKTFLD AGRSL SCG+SDS+ + G ++ RN D ++ D
Sbjct: 300 --CGIPFNWSRIHHRGKTFLDKAGRSL-SCGMSDSKGGRKG-ETNERNGSDKMMIQSDDD 355
Query: 336 SSSSTNSGAEALPLLVEASGSQSTEHAGWVHDYSGELGIFADHLLKHAVDSDLASEGRSG 395
SSS S EALPLLV+ S E+ GWVHDYSGELGIFAD LLK+ DSDLASEGRSG
Sbjct: 356 SSSFIGSDGEALPLLVD-----SGENDGWVHDYSGELGIFADSLLKNDEDSDLASEGRSG 410
Query: 396 GQQ-------NLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVF 448
++ N +HQ+LT+KY P+TFRDL+GQNLV QALSNAV RRK+GLLYVF
Sbjct: 411 EKKHKKKSHVNARHRHRQQHQSLTEKYTPKTFRDLLGQNLVVQALSNAVARRKLGLLYVF 470
Query: 449 YGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFES 508
+GP+GTGKTSCARIFARALNC S+EQPKPCG C+SC+SHD GKS NI+EVGPVGN+DFE
Sbjct: 471 HGPNGTGKTSCARIFARALNCHSMEQPKPCGTCSSCVSHDMGKSWNIREVGPVGNYDFEK 530
Query: 509 ILDLLDN--MVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-PRRVVFILVSSSLD 565
I+DLLD MV+S+ P R+F+FDDCDTLS D W+A+SKVVDRA PR VVFILV SSLD
Sbjct: 531 IMDLLDGNVMVSSQSP---RVFIFDDCDTLSSDCWNALSKVVDRAAPRHVVFILVCSSLD 587
Query: 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMT 625
LPH+IISRCQKFFFPK+KDADI+Y+LQWIASKE IEIDKDALKLIASRSDGSLRDAEMT
Sbjct: 588 VLPHVIISRCQKFFFPKLKDADIVYSLQWIASKEEIEIDKDALKLIASRSDGSLRDAEMT 647
Query: 626 LEQLSLLGQRISVPLVQELV--------------GLISDEKLVDLLDLALSADTVNTVKN 671
LEQLSLLGQRISVPLVQELV GL+SDEKLVDLLDLALSADTVNTVKN
Sbjct: 648 LEQLSLLGQRISVPLVQELVSIVLSHHHIKQLKVGLVSDEKLVDLLDLALSADTVNTVKN 707
Query: 672 LRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALK 731
LR IMET VEPLALMSQLATVITDILAGSYDFTKD+H+RKFFRRQPL KE+MEKLRQALK
Sbjct: 708 LRTIMETSVEPLALMSQLATVITDILAGSYDFTKDQHKRKFFRRQPLPKEDMEKLRQALK 767
Query: 732 TLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLP-SSSADTSFSHSPLDLENAGGRGMT 790
TLSEAEKQLR+SNDKLTWLTAALLQLAPDQ Y+L SS+ADT GGR +
Sbjct: 768 TLSEAEKQLRVSNDKLTWLTAALLQLAPDQNYLLQRSSTADT------------GGRESS 815
Query: 791 RKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKS 850
+ H + S D G + LDR+R
Sbjct: 816 -----------------------DHHLDPSSDAAGG---RSSGLDRRRGD---------- 839
Query: 851 PLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRS 910
S +R +EEIWLEV+ +++ NG +EFLY+EG+++S++ G+APTV L F S
Sbjct: 840 ---------SRKNRPAVEEIWLEVIEKLRVNGLREFLYKEGRIVSLNLGSAPTVHLMFSS 890
Query: 911 HLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVI 970
LTKS AEKF+ I+QAFE+VL SP+TIEIRCE+K D + H P KD S +
Sbjct: 891 PLTKSTAEKFRSHIMQAFEAVLESPVTIEIRCETKKDPRNNVHHHHHHPTVKDKS---LP 947
Query: 971 DSESIIGNRGPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPASPRET 1030
S ++IG+ D I+G+ GR+EIVEV S +
Sbjct: 948 QSLALIGH----------------DYNIDGS--------------GRSEIVEVTESNGQR 977
Query: 1031 KDHAENRADY------SKRASLSERKKL---GEQSQCQSIVRSKVSLAHVIQQAEGCTQR 1081
+ + + + S + + RK L Q+Q QSIVR KVSLAHVIQQA+GC+ +
Sbjct: 978 RQQQKQQEEERTEPVGSSALARARRKHLEASQSQNQSQSIVRGKVSLAHVIQQADGCSLQ 1037
Query: 1082 NGWSKRKAVSIAEKLEQENL 1101
NGWSKRKAVSIAEKLEQENL
Sbjct: 1038 NGWSKRKAVSIAEKLEQENL 1057
>gi|297791151|ref|XP_002863460.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297309295|gb|EFH39719.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 970
Score = 1056 bits (2731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 634/1165 (54%), Positives = 757/1165 (64%), Gaps = 213/1165 (18%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMH--KHSPILADRS-IMRDLMVLQ 57
M+R RILKD+NGDI +HLRNHIHLTNCIHLKNHMH K SP+L DRS +MRDL+VLQ
Sbjct: 1 MSRVSSSRILKDSNGDIGEHLRNHIHLTNCIHLKNHMHNNKQSPVLNDRSLLMRDLVVLQ 60
Query: 58 RSRSLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQIP 117
RS SLRDPSAS PK ++ REGRR G+ RLSGSSP I
Sbjct: 61 RSTSLRDPSAS-------------PKLREDHKDSREGRRRSGL-------RLSGSSP-IV 99
Query: 118 NFVTSKVAPVNGVAGVEIEMIEELGEKNLVERAGLIFWKGRQTQDVR------VKTLSEQ 171
+F TSKV P + + + G +++ E + K V KTLS+Q
Sbjct: 100 SFGTSKVTPSD--EKFDRSSRKSYGVEDVNEFYSVASVKSVSKDRVNKVNEGIFKTLSDQ 157
Query: 172 LHDIPMDSDDLISSNVQFCGSRSGLEKTGEEHGGIRGYSNGLHRVKRRKFRGARRARTAS 231
L+++ DSDDL+S NV G R NG KRRKFRG RRA A
Sbjct: 158 LNEVGGDSDDLVSCNV---GPR----------------CNGR---KRRKFRGTRRAGRAV 195
Query: 232 ALRD-VGGQSEMSVASNSLAQGLACPKYHMEEEDEEYGERNVTRA-PRNGCGIPWNWSRI 289
+RD G +SEM++ASNS+ +G Y EE E+N++ A PRNGCGIP+NWSRI
Sbjct: 196 IVRDNAGNESEMAIASNSVPRGEK---YEGEEGGGRDREQNMSGAVPRNGCGIPFNWSRI 252
Query: 290 HHRGKTFLDMAGRSLTSCGLSDSRIRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPL 349
HHRGKTFLD+AGRSL SCG+SDS+ RK P++SD SSS EA PL
Sbjct: 253 HHRGKTFLDIAGRSL-SCGMSDSKGRKGELGR--------PMLSDSSSSDR----EASPL 299
Query: 350 LVEASGSQSTEHAGWVHDYSGELGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGR-H 408
LV+ S E+ WVHDYSGELGIFAD+LLK+ DS + +N R H
Sbjct: 300 LVD-----SAENEEWVHDYSGELGIFADNLLKNGKDSGFGKK---------SSRKNARWH 345
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q+ TQKY PRTFRDL+GQNLV QALSNAV +R+VGLLYVF+GP+GTGKTSCARIFARALN
Sbjct: 346 QSFTQKYAPRTFRDLLGQNLVVQALSNAVAKRRVGLLYVFHGPNGTGKTSCARIFARALN 405
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
C S EQ KPCG C SC+S+D GK+R I+E+GPV +FDFE +LLD M + Q +F
Sbjct: 406 CHSTEQSKPCGVCGSCVSYDGGKNRYIREMGPVKSFDFE---NLLDKMNIRQQQRQQLVF 462
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+FDDCDT+S D W+A+SK+VDRAPRRVVFILV SSLD LPHII+SRCQKFFFPK+KDADI
Sbjct: 463 IFDDCDTMSTDCWNALSKIVDRAPRRVVFILVCSSLDVLPHIIVSRCQKFFFPKLKDADI 522
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLI 648
I +LQ IASKE I+I+KDALKL+ASRSDGSLRDAEMTLEQLSLLG R+SVPLVQE+VGLI
Sbjct: 523 INSLQLIASKEEIDIEKDALKLVASRSDGSLRDAEMTLEQLSLLGTRVSVPLVQEMVGLI 582
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH 708
SDEKLVDLLDLALSADTVNTVKNLR+IMETG+EPLALMSQLATVITDILAGSYDFTKD+
Sbjct: 583 SDEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMSQLATVITDILAGSYDFTKDQC 642
Query: 709 RRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLP-S 767
+RKFFRRQPLSKE+MEKL+QALKTLSE+EKQLR+S+DKLTWLTAALLQLAPD+QY+LP S
Sbjct: 643 KRKFFRRQPLSKEDMEKLKQALKTLSESEKQLRVSSDKLTWLTAALLQLAPDKQYLLPHS 702
Query: 768 SSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGN 827
SSAD SF+H+P+ ++ S D + G
Sbjct: 703 SSADASFNHTPI-----------------------------------MDSDPSNDAVAGT 727
Query: 828 MRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFL 887
R G S G S +R +E+IWL V+ +++ NG KEFL
Sbjct: 728 RRDG---------------------SMQG--FSCKNRPSVEDIWLAVIEKVRVNGLKEFL 764
Query: 888 YREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKID 947
Y+EGK+ S+S G+APTVQL F S + KS AE FKD IL+AFE+VLGSP+T+E R ESK
Sbjct: 765 YKEGKIFSISIGSAPTVQLLFNSPIAKSTAENFKDNILKAFEAVLGSPVTLEFRIESKKQ 824
Query: 948 TQAGFHLPLMLPASKDGSSQMVIDSESIIGNRGPMAGPIEISKRIPRDEGINGASSQAQQ 1007
P + D SS + G S+ +
Sbjct: 825 -----------PKNVDLSS-------------------------------LQGLSNGERF 842
Query: 1008 LHSESLEMGRTEIVEVPASPRETKDHAENRADYSKRASLSERKKLGEQSQCQSIVRSKVS 1067
S GR+EIVEV S E+ +R L + Q+Q QSIVR KVS
Sbjct: 843 RES-----GRSEIVEVAES--------ESPMTRVRRKHLEASQ---NQNQNQSIVRGKVS 886
Query: 1068 LAHVIQQAEGCTQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICRLK 1127
LA VI+QAEG N WSK KAV IA KLEQENL+LEP SRSL+CWK S+ TRRK+ RLK
Sbjct: 887 LAQVIKQAEG----NSWSKHKAVEIANKLEQENLKLEPSSRSLICWKPSRTTRRKLSRLK 942
Query: 1128 IRRRKPL--SLLKLVSCGKCLSSKS 1150
+R R+ SLLK +SCGKCLS++S
Sbjct: 943 VRTRRIRLHSLLKFLSCGKCLSTRS 967
>gi|297740543|emb|CBI30725.3| unnamed protein product [Vitis vinifera]
Length = 919
Score = 1009 bits (2608), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/771 (67%), Positives = 585/771 (75%), Gaps = 103/771 (13%)
Query: 387 DLASEGRSGGQQNLGDNR--NGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGL 444
D+A S G L D+R G HQNLTQKYMPRTF LVGQNLVAQALSNAV++RKVG
Sbjct: 247 DMAGRSLSCG---LSDSRLRRGGHQNLTQKYMPRTFGGLVGQNLVAQALSNAVVKRKVGF 303
Query: 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNF 504
LYVFYGPHGTGKTSCARIFARALNC S+E PKPCGFCNSCI+HD GKSRNI+EVGPV N
Sbjct: 304 LYVFYGPHGTGKTSCARIFARALNCPSMEHPKPCGFCNSCIAHDMGKSRNIREVGPVSNL 363
Query: 505 DFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564
DFE I++LLDN++ S+ P+QYR+F+FDDCDTLSPD WSAISK++DRAPRR+VF+LVSS+L
Sbjct: 364 DFEGIMNLLDNVIASQLPTQYRVFIFDDCDTLSPDCWSAISKLIDRAPRRMVFVLVSSTL 423
Query: 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEM 624
D LPHIIISRCQKFFFPK+KDADIIYTLQWIA+KE +EIDKDALKLIASRSDGSLRDAEM
Sbjct: 424 DVLPHIIISRCQKFFFPKLKDADIIYTLQWIATKEDLEIDKDALKLIASRSDGSLRDAEM 483
Query: 625 TLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLA 684
TLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLR IMETGVEPLA
Sbjct: 484 TLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLREIMETGVEPLA 543
Query: 685 LMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSN 744
LMSQLATVITDILAGSYDFTK+R RRKFFRRQ LSKE+MEKLRQALKTLSEAEKQLRMSN
Sbjct: 544 LMSQLATVITDILAGSYDFTKERLRRKFFRRQALSKEDMEKLRQALKTLSEAEKQLRMSN 603
Query: 745 DKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKET 804
DKLTWLTAALLQLAPDQQY+LPSSSADT + + G GM R+
Sbjct: 604 DKLTWLTAALLQLAPDQQYMLPSSSADT-------NRKKHAGSGMARQ------------ 644
Query: 805 GVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSR 864
++S D N G+ + G R
Sbjct: 645 -------------QSSAHSADTN-------------------------RLSGKQIPGKVR 666
Query: 865 NGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQI 924
IEEIWLEVL +IQ + KEFLY+EGKLISVS GAAPTVQL F SHLTKSKAEK++ I
Sbjct: 667 KEIEEIWLEVLEKIQVDTLKEFLYKEGKLISVSIGAAPTVQLMFSSHLTKSKAEKYRGHI 726
Query: 925 LQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVIDSESIIGNRGPMAG 984
L+AFES+LGSP+TIEIR ES+ D +AG H+PL+ A+KD SQM+
Sbjct: 727 LRAFESILGSPVTIEIRSESRKDAKAGAHVPLIFSAAKDLPSQML--------------- 771
Query: 985 PIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPASPRETKDHAENRADYSKR- 1043
L++ SLEMGR+EIVE+ SPRE A + ++
Sbjct: 772 -----------------------LNANSLEMGRSEIVEILPSPRELNSWAGEASSSHRKS 808
Query: 1044 --ASLSERKKLGEQSQCQSIVRSKVSLAHVIQQAEGCTQRNGWSKRKAVSIAEKLEQENL 1101
AS+ ER+K GEQS QS+VRSKVSLAHVIQQAEGC+QR+GW+KRKAVSIAEKLEQENL
Sbjct: 809 TMASVPERRKFGEQSHSQSLVRSKVSLAHVIQQAEGCSQRSGWTKRKAVSIAEKLEQENL 868
Query: 1102 RLEPRSRSLLCWKASKVTRRKICRLKIRRRKPLSLLKLVSCGKCLSSKSPR 1152
RLEPRSRSLLCWKASKVTRRK+ R KIR R+P SLLKLVSCGKCLSSKSPR
Sbjct: 869 RLEPRSRSLLCWKASKVTRRKLSRFKIRTRRPHSLLKLVSCGKCLSSKSPR 919
Score = 315 bits (808), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 191/319 (59%), Positives = 212/319 (66%), Gaps = 54/319 (16%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSR 60
MTRAVR RILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDL+VLQRSR
Sbjct: 1 MTRAVRDRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLIVLQRSR 60
Query: 61 SLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQIPNFV 120
SLRDPS SPPSWHSPSV+DLL KKG RLSGSSP + +
Sbjct: 61 SLRDPSTSPPSWHSPSVIDLLSKKG---------------------RRLSGSSPTVASLA 99
Query: 121 TSKVAPVNGVAGVE-IEMIEELGEKNLVERAGLIFWKGRQTQDVRVKTLSEQLHDIPMDS 179
TSKVAP + + + EL N + + KG+ Q+V +KTLSEQL + P+DS
Sbjct: 100 TSKVAPGEPSQDQDGNDSVNELVSGNSESKDKRVKQKGKLRQEVLLKTLSEQLKEFPVDS 159
Query: 180 DDLISSNVQFCGSRSGLEKTGEEHGGIRGYSNGLHRVKRRKFRGARRARTASALRDVGGQ 239
D SS++ G R ARR R A LRD+G Q
Sbjct: 160 -DAASSHIHLQGRR------------------------------ARRNRAAIGLRDIGAQ 188
Query: 240 SEMSVASNSLAQGLACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDM 299
+E+SVASNS AQG C K MEEE EEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDM
Sbjct: 189 NELSVASNSFAQGSVCLKNEMEEEREEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDM 248
Query: 300 AGRSLTSCGLSDSRIRKAG 318
AGRSL SCGLSDSR+R+ G
Sbjct: 249 AGRSL-SCGLSDSRLRRGG 266
>gi|357128701|ref|XP_003566008.1| PREDICTED: uncharacterized protein LOC100843955 [Brachypodium
distachyon]
Length = 1097
Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/920 (53%), Positives = 628/920 (68%), Gaps = 81/920 (8%)
Query: 277 RNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDSRIR------------------KAG 318
RN CGIPWNWSR+HHR ++ LDMAGRSL SCGLSD + G
Sbjct: 215 RNVCGIPWNWSRLHHRSRSILDMAGRSL-SCGLSDPKSASAAGAGAGRRSEAATSAASCG 273
Query: 319 GASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAGWVHDYSGELGIFADH 378
+ SR+ P P V+ R +SST+S +++LPLL E G +SGELGIF++
Sbjct: 274 YMNGSRSHPHFP-VTARLTSSTSSDSDSLPLLAEG---MRNGIRGVSRSFSGELGIFSNQ 329
Query: 379 LLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVM 438
+DSDL SE RSG Q++ G +++GRH++LTQKY PRTF+D+VGQ+LV QALSNA++
Sbjct: 330 --SSELDSDLMSEARSG-QKSRG-SQHGRHRSLTQKYAPRTFKDVVGQSLVVQALSNAIL 385
Query: 439 RRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV 498
RRK+GL+YVFYGPHGTGKTSCAR+FA+ALNC S E P+PC C SCI+H+ GKSR++ E+
Sbjct: 386 RRKIGLVYVFYGPHGTGKTSCARVFAKALNCHSGEHPRPCDLCASCIAHNLGKSRSLVEI 445
Query: 499 GPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFI 558
GPVGN D +SI+D+LDN++ S P+Q+R+F+ DDC+TL PD+WS ISKVV+RAPRRVVFI
Sbjct: 446 GPVGNIDLDSIVDILDNVMLSPAPAQHRVFIVDDCNTLPPDTWSVISKVVERAPRRVVFI 505
Query: 559 LVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGS 618
L+S +LD LPHII+SRCQKFFFPK+K+ DI+ TLQWI + +G+++D+DAL+LIASRSDGS
Sbjct: 506 LISPNLD-LPHIIMSRCQKFFFPKLKECDIVNTLQWICTSDGLDVDRDALRLIASRSDGS 564
Query: 619 LRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMET 678
LRDAEMTL+QLSLLGQRIS+ LVQELVGL+SD+KLV+LLDLALSADT NTVK LR I ET
Sbjct: 565 LRDAEMTLDQLSLLGQRISMSLVQELVGLVSDDKLVNLLDLALSADTANTVKTLRDITET 624
Query: 679 GVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEK 738
GVEPL+LMSQLAT+ITDILAG+Y FT++R RR+FF+R LSKE+ME+LRQALKTLSEAEK
Sbjct: 625 GVEPLSLMSQLATIITDILAGTYTFTQERIRRRFFKRPTLSKEDMERLRQALKTLSEAEK 684
Query: 739 QLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAE 798
QLR+SNDK+TWLTAALLQLAPD+QY+LPSSS TSF N G E
Sbjct: 685 QLRLSNDKMTWLTAALLQLAPDKQYILPSSSTSTSF--------NQGN-----------E 725
Query: 799 ISNKETGVPMNVRLENFHAENSGDFI-DGNMRKGISLDRKR---HTGSGMALQQKSPLSA 854
I G+P N NS I N+ + +R HT G L S +
Sbjct: 726 IYAGHHGLPRASDQGNQQYRNSNAGICSSNVMASTYIGGRRPREHTPDGCIL---SSSAT 782
Query: 855 GGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTK 914
S S+ + IW VL IQ++ ++ + +EG++ISVS G APTVQLTF SH+ K
Sbjct: 783 RVNERSKCSKTDNDMIWQAVLENIQSDSLRKMMAKEGRVISVSLGTAPTVQLTFSSHVNK 842
Query: 915 SKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVIDSES 974
SKAEK + QILQAFESVL S + +EIR ESK D + P +D SS + + S
Sbjct: 843 SKAEKSRGQILQAFESVLSSNIILEIRYESKDDMGGDSAIS---PYREDSSSNIAL-RRS 898
Query: 975 IIGNRGPMAGPIEISKRIPRDEGINGASS-QAQQLHSESLEMGRTEIVEVPASPRETKDH 1033
+ +G + +R+ + GASS Q + + S+ + EI+EV S
Sbjct: 899 FTKHSSVSSGGENLIRRLQKGSMAQGASSNQTRWMQSDPHILTEGEIIEVGPSQMGWYGE 958
Query: 1034 AENRA---DYSKRASLSERKKLGEQSQ-----------------CQSIVRSKVSLAHVIQ 1073
+N A D ++ S+ L Q+Q ++IVR KVSLAHVI
Sbjct: 959 PDNGAVARDRRRKESVWGAAALSSQNQENIVPQGGINEDNEHDRQKNIVRGKVSLAHVIN 1018
Query: 1074 QAEGCTQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICRL-KIRRRK 1132
+AE C+Q+ GWS++KA+SIAEKLEQENLR+EPRS SLLCWKAS TRRK+ L KIR R+
Sbjct: 1019 RAEACSQQGGWSRQKAMSIAEKLEQENLRMEPRS-SLLCWKASSTTRRKLSALKKIRTRR 1077
Query: 1133 PLSLLKLVSCGKCLSSKSPR 1152
+L +LV CG+C+S+KSPR
Sbjct: 1078 SRALSRLVLCGRCISTKSPR 1097
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 17/64 (26%)
Query: 20 HLRNHIHLTNCIHLKNHMHKHSPILAD-----------------RSIMRDLMVLQRSRSL 62
HLR H HLTNCIHL++H H + A ++MRDL+ +QRSRSL
Sbjct: 29 HLRGHAHLTNCIHLRHHQAPHGGVGASGRRGRSSPTGSPSAASSAALMRDLLAMQRSRSL 88
Query: 63 RDPS 66
RDPS
Sbjct: 89 RDPS 92
>gi|218197144|gb|EEC79571.1| hypothetical protein OsI_20723 [Oryza sativa Indica Group]
Length = 1079
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/979 (52%), Positives = 662/979 (67%), Gaps = 81/979 (8%)
Query: 215 RVKRRKF-RGA-RRARTASAL-----RDVGGQSEMSVASNSLAQGLACPKYHM------- 260
R RR+F RGA RRA ASA R V G + +SV NS +Q C ++
Sbjct: 141 RGPRRRFKRGAGRRAAPASATGGALDRGVDGAAAVSV--NSSSQEAVCGNKYLFGVVGGD 198
Query: 261 ----EEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDSRIR- 315
+E E ++ RN CGIPWNWSRIHHRGK+FLDMAGRS SCGLSD +
Sbjct: 199 DDDDDECGVELQRPQASQDSRNVCGIPWNWSRIHHRGKSFLDMAGRSF-SCGLSDPKSAS 257
Query: 316 ---------KAGGASH---SRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAG 363
AG H SR+ P P+ + +ST+S +++LPLLV+ + G
Sbjct: 258 AARRSIAATSAGSCGHMDGSRSHPHFPVTA--RLTSTSSDSDSLPLLVDGVRNGI---GG 312
Query: 364 WVHDYSGELGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDL 423
+SGELGIF++ + +DSDLASE RSG Q++ G +R GRHQ+LTQKY P+TF+D+
Sbjct: 313 IARSFSGELGIFSNQTSE--LDSDLASEARSG-QRSRGSHR-GRHQSLTQKYSPKTFKDM 368
Query: 424 VGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483
+GQ+LV QALSNA+++RK+GL+YVFYGPHGTGKTSCAR+FA+ALNC S E P+PC C S
Sbjct: 369 IGQSLVVQALSNAILKRKIGLVYVFYGPHGTGKTSCARVFAKALNCHSPEHPRPCDSCAS 428
Query: 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSA 543
CI+H+ GKSR++ E+GPVGN D +SI+D+LDN++ S P+Q+R+F+ DDC+TL PD+WS
Sbjct: 429 CIAHNLGKSRSLVEIGPVGNIDLDSIVDILDNVMLSPVPTQHRVFIVDDCNTLPPDTWSV 488
Query: 544 ISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEI 603
ISKV++RAPRRVVFIL+S +LD LPHII+SRCQKFFFPK+K+ DI+ TLQWI++ EG+++
Sbjct: 489 ISKVIERAPRRVVFILISPNLD-LPHIIVSRCQKFFFPKLKECDIVNTLQWISTSEGLDV 547
Query: 604 DKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSA 663
D+DALKLIASRSDGSLRDAEMTL+QLSLLGQRIS+ LVQELVGL+SD+KLVDLLDLALSA
Sbjct: 548 DRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISMSLVQELVGLVSDDKLVDLLDLALSA 607
Query: 664 DTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEM 723
DTVNTVK LR I ETGVEPLALMSQLAT+ITDILAG+Y FT++R RRKFF+ LSK++M
Sbjct: 608 DTVNTVKTLRDITETGVEPLALMSQLATIITDILAGTYAFTQERVRRKFFKCPTLSKDDM 667
Query: 724 EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDL-E 782
EKLRQALKTLSEAEKQLR+SNDK+TWLTAALLQLAPD+QYVLPSSS SF+ L E
Sbjct: 668 EKLRQALKTLSEAEKQLRVSNDKMTWLTAALLQLAPDKQYVLPSSSTSASFNQGLLTCPE 727
Query: 783 NAGGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGS 842
GR + I G+P N L G D NM +R G
Sbjct: 728 GDVGRSTAI---DHTNIYAGPHGLPRNANL--------GVDSDNNM-----AGTRRGKGP 771
Query: 843 GMALQQKSPLSAGGRHV--SGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGA 900
G L A V S S++ E IW VL I+++ + L+ SF
Sbjct: 772 GEHTPDNHVLLARATRVNLSRYSKSDNEMIWQAVLEHIRSDSNTS----KDDLLLFSFPP 827
Query: 901 APTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPA 960
APTVQL F S + KSKAE+ ++Q+L AFESVL S +T+EIR E K D +AG H+P + P
Sbjct: 828 APTVQLMFSSRVNKSKAERSREQVLHAFESVLASAITLEIRYEPKDDARAG-HVPAISPY 886
Query: 961 SKDGSSQMVI----DSESIIGNRGPMAGPIEISKRIPRDEGINGA-SSQAQQLHSESLEM 1015
+D +S + + S +RG + +R+ +D ++GA S+Q + + S+ +
Sbjct: 887 PEDSTSNVALRRSFTRHSSASSRGE-----NLIRRLQKDNVVHGANSNQTRWVQSDPHIL 941
Query: 1016 GRTEIVEVPASPRETKDHAENRADYSKRASLSERKKL--GEQSQCQSIVRSKVSLAHVIQ 1073
EI+EV S + N A K + + +++ E + SIVR KVSLAHVI
Sbjct: 942 TEGEIIEVGPSQVDWHSEPNNSAGVRKENIVLQGREVVNNEHGRQNSIVRGKVSLAHVIN 1001
Query: 1074 QAEGCTQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICRLKIRRRKP 1133
+AE C+Q+ GWS++KA+SIAEKLEQENLRLEP+S SLLCWKAS TRRK+ LK+R R+
Sbjct: 1002 KAETCSQQGGWSRQKAMSIAEKLEQENLRLEPKS-SLLCWKASSTTRRKLSALKMRTRRS 1060
Query: 1134 LSLLKLVSCGKCLSSKSPR 1152
+L +L CGKC+S+KSPR
Sbjct: 1061 RALSRLAFCGKCISTKSPR 1079
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 38/64 (59%), Gaps = 18/64 (28%)
Query: 20 HLRNHIHLTNCIHLKNHMHKH-------------SPI----LADRSIMRDLMVLQRSRSL 62
H+R H HLTNCIHL++H H H SP A ++MRDL+ LQRSRSL
Sbjct: 25 HMRGHAHLTNCIHLRHH-HAHGLGAGSASSGQRRSPTGSSASASAALMRDLLALQRSRSL 83
Query: 63 RDPS 66
RDPS
Sbjct: 84 RDPS 87
>gi|326530674|dbj|BAK01135.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1088
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/912 (53%), Positives = 624/912 (68%), Gaps = 65/912 (7%)
Query: 277 RNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDSRIRKAGG--------------ASH 322
RN CGIPWNWSR+HHR K+ LDMAGRSL SCGLSD + A A
Sbjct: 206 RNVCGIPWNWSRLHHRSKSILDMAGRSL-SCGLSDPKSAAAARRSLAATSAASCGVYADG 264
Query: 323 SRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAGWVHDYSGELGIFADHLLKH 382
SR+ P P V+ R +SST+S +++LPLL E G+++ A +SGELGIF++
Sbjct: 265 SRSHPHFP-VTARLTSSTSSDSDSLPLLAE--GARNGIRA-ISRSFSGELGIFSNQ--SS 318
Query: 383 AVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKV 442
+DSDL SE RSG Q++ G R GRH++LTQKY PRTF+D+VGQ+LV QALSNA+++RK+
Sbjct: 319 ELDSDLMSEARSG-QKSRGSQR-GRHRSLTQKYAPRTFKDVVGQSLVVQALSNAILKRKI 376
Query: 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVG 502
G +YVFYGPHGTGKTSCAR+FA+ALNC S E PKPC C SCI+H+ GKSR++ E+GPVG
Sbjct: 377 GSVYVFYGPHGTGKTSCARVFAKALNCHSPEHPKPCDTCASCIAHNLGKSRSLMEIGPVG 436
Query: 503 NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562
N D +SI+D+LDN++ S P+ +R+F+ DDC+TL PD+WS ISKVV+RAPRRVVF+L+S
Sbjct: 437 NIDLDSIVDILDNVILSPLPAHHRVFIVDDCNTLPPDTWSVISKVVERAPRRVVFVLISP 496
Query: 563 SLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA 622
+LD LPHII+SRCQKFFFPK+K+ DI+ TLQWI + +G+++D+DALKLIASRSDGSLRDA
Sbjct: 497 NLD-LPHIIMSRCQKFFFPKLKECDIVNTLQWICTSDGLDVDRDALKLIASRSDGSLRDA 555
Query: 623 EMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEP 682
EMTL+QLSLLGQRI++PLVQEL GL+SD+KLV+LLDLALSADT NTVK LR I ETGVEP
Sbjct: 556 EMTLDQLSLLGQRITMPLVQELAGLVSDDKLVNLLDLALSADTANTVKALRDITETGVEP 615
Query: 683 LALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRM 742
L+LMSQLAT+ITDILAG+Y F ++R RRKFF+R LSKE+MEKLRQALKTLSEAEKQLR+
Sbjct: 616 LSLMSQLATIITDILAGTYTFAQERIRRKFFKRPTLSKEDMEKLRQALKTLSEAEKQLRV 675
Query: 743 SNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGG-ERAEISN 801
SNDK+TWLTAALLQLAPD+QY+LPSSS TSF+ L + R EI
Sbjct: 676 SNDKMTWLTAALLQLAPDKQYILPSSSTSTSFNQG---LSTYPDGDIARNSTTNHKEIYA 732
Query: 802 KETGVPMNVRLENFHAENSG-----DFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGG 856
G+ EN N+ + N G R+ HT G L + G
Sbjct: 733 GPHGLSRTPDQENQQYRNANLGICSSHVTANTYHGGRRLRE-HTPDGHVLSTSATRINEG 791
Query: 857 RHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSK 916
S S+ E IW VL +Q++ ++ + +EG++ISVS G APTVQL F SH+ KSK
Sbjct: 792 ---SKCSKTDNEMIWQAVLENVQSDSLRKMMAKEGRVISVSLGTAPTVQLMFSSHVNKSK 848
Query: 917 AEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVIDSESII 976
AEK + QILQAFESVL S + +EIR ESK D G +D S + + + S
Sbjct: 849 AEKSRGQILQAFESVLSSAIILEIRYESK-DGGEGV---------EDTYSNIAL-TRSFT 897
Query: 977 GNRGPMAGPIEISKRIPRDEGINGASS-QAQQLHSESLEMGRTEIVEVPASPRETKDHAE 1035
+ +G + R+ + G SS Q + + S+ + EI+EV S E +
Sbjct: 898 KHSSVSSGGENLVSRLQKGRVAPGTSSNQTRWMQSDPHILTEGEIIEVGPSEMEWYGEPD 957
Query: 1036 NRADYSKR----ASLS--ERKKLG---------EQSQCQSIVRSKVSLAHVIQQAEGCTQ 1080
A +R A+LS ++ +G E + ++IVR KVSLAHVI +AE C+Q
Sbjct: 958 AVASDKRRGVWVAALSPQDQGNIGPRGGTNVNNEHDRQKNIVRGKVSLAHVINKAEACSQ 1017
Query: 1081 RNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICRLKIRRRKPLSLLKLV 1140
+ GWS++K +SI EKLEQENLRLEPRS SLLCWKAS TRRK+ LKIR R+ +L +LV
Sbjct: 1018 QGGWSRQKGMSITEKLEQENLRLEPRS-SLLCWKASSTTRRKLSALKIRTRRSRALSRLV 1076
Query: 1141 SCGKCLSSKSPR 1152
CG+C+S KSPR
Sbjct: 1077 LCGRCISVKSPR 1088
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 36/64 (56%), Gaps = 16/64 (25%)
Query: 19 DHLRNHIHLTNCIHLK-----------NHMHKHSPILA-----DRSIMRDLMVLQRSRSL 62
+HLR H HLTNCIHL+ + SP A S+MRDL+ +QRSRSL
Sbjct: 19 EHLRGHAHLTNCIHLRHHHAHAHSHGSASARRRSPPTAAPAEPSASLMRDLLAMQRSRSL 78
Query: 63 RDPS 66
RDPS
Sbjct: 79 RDPS 82
>gi|9758675|dbj|BAB09214.1| unnamed protein product [Arabidopsis thaliana]
Length = 900
Score = 851 bits (2198), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/791 (60%), Positives = 570/791 (72%), Gaps = 92/791 (11%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMH---KHSPILADRSI-MRDLMVL 56
M+R R+LKD+NGDI +HLRNHIHLTNCIHLKNHMH K SP+L DRS+ MRDL+VL
Sbjct: 1 MSRVASSRVLKDSNGDIGEHLRNHIHLTNCIHLKNHMHNNNKQSPVLTDRSLLMRDLVVL 60
Query: 57 QRSRSLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQI 116
QRSRSLRDPSASP +L D+ REGRR G+ RLSGSSP I
Sbjct: 61 QRSRSLRDPSASP---------NLKEDHQDS----REGRRRSGL-------RLSGSSP-I 99
Query: 117 PNFVTSKVAPVN---GVAGVEIEMIEELGEKNLVERAGLIFWK--GRQTQDVRVKTLSEQ 171
+F TSKV P + + + +EE+ E V + ++ + VKTLS+Q
Sbjct: 100 VSFGTSKVTPSDEKFDRSSRKSYRVEEVNEVYSVPSVKSVSKDRINKKVNEAIVKTLSDQ 159
Query: 172 LHDIPMDSDDLISSNVQFCGSRSGLEKTGEEHGGIRGYSNGLHRVKRRKFRGARRARTAS 231
L+++ DSDDL+S NV R +G R K R R A RA
Sbjct: 160 LNEVGGDSDDLVSCNV-------------------RPRGDGCRRRKFRGTRRAGRAVN-- 198
Query: 232 ALRD--VGGQSEMSVASNSLAQGLACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRI 289
+RD G +SEMS+ASNS+ +G E E+N++ CGIP+NWSRI
Sbjct: 199 -VRDNAAGNESEMSIASNSVPRGEK--YEGEEGGGGRDREQNMS------CGIPFNWSRI 249
Query: 290 HHRGKTFLDMAGRSLTSCGLSDSRIRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPL 349
HHRGKTFLD+AGRSL SCG+SDS+ RK + P+ SD SSS EALPL
Sbjct: 250 HHRGKTFLDIAGRSL-SCGISDSKGRKGEAGT--------PMFSDSSSSDR----EALPL 296
Query: 350 LVEASGSQSTEHAGWVHDYSGELGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQ 409
LV+ S ++ WVHDYSGELGIFAD+LLK+ DS + G+ ++N HQ
Sbjct: 297 LVD-----SADNEEWVHDYSGELGIFADNLLKNGKDSVI---GKKSSRKN-----TRWHQ 343
Query: 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC 469
+ TQKY PRTFRDL+GQNLV QALSNA+ +R+VGLLYVF+GP+GTGKTSCAR+FARALNC
Sbjct: 344 SFTQKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARALNC 403
Query: 470 QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFV 529
S EQ KPCG C+SC+S+D GK+R I+E+GPV +FDFE +LLD + Q + +
Sbjct: 404 HSTEQSKPCGVCSSCVSYDDGKNRYIREMGPVKSFDFE---NLLDKTNIRQQQKQQLVLI 460
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
FDDCDT+S D W+ +SK+VDRAPRRVVF+LV SSLD LPHII+SRCQKFFFPK+KD DII
Sbjct: 461 FDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDVDII 520
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLIS 649
+LQ IASKE I+IDKDALKL+ASRSDGSLRDAEMTLEQLSLLG RISVPLVQE+VGLIS
Sbjct: 521 DSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLLGTRISVPLVQEMVGLIS 580
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR 709
DEKLVDLLDLALSADTVNTVKNLR+IMETG+EPLALMSQLATVITDILAGSYDFTKD+ +
Sbjct: 581 DEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMSQLATVITDILAGSYDFTKDQCK 640
Query: 710 RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLP-SS 768
RKFFRRQPLSKE+MEKL+QALKTLSE+EKQLR+SNDKLTWLTAALLQLAPD+QY+LP SS
Sbjct: 641 RKFFRRQPLSKEDMEKLKQALKTLSESEKQLRVSNDKLTWLTAALLQLAPDKQYLLPHSS 700
Query: 769 SADTSFSHSPL 779
SAD SF+H+PL
Sbjct: 701 SADASFNHTPL 711
Score = 114 bits (285), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 121/242 (50%), Gaps = 75/242 (30%)
Query: 860 SGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEK 919
S +R +E+IWL V+ ++ NG +EFLY+EGK+ S+S G+A KS AE
Sbjct: 734 SCKNRPSVEDIWLAVIENVRVNGLREFLYKEGKIFSISIGSA------------KSTAEN 781
Query: 920 FKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVIDSESIIGNR 979
F++ IL+AFE+VLGSP+T+E+R ESK D GF +S G S G R
Sbjct: 782 FEEHILKAFEAVLGSPVTLEMRTESKKDL--GF-------SSLQGLSN---------GER 823
Query: 980 GPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPASPRETKDHAENRAD 1039
+G R+EIVEV S E+
Sbjct: 824 FRESG--------------------------------RSEIVEVADS--------ESPMT 843
Query: 1040 YSKRASLSERKKLGEQSQCQSIVRSKVSLAHVIQQAEGCTQRNGWSKRKAVSIAEKLEQE 1099
+R L E + Q+Q QSIVR KVSLA VI+QAEG N WSK KAV IA KLEQE
Sbjct: 844 RVRRKHL-EASQNQNQNQNQSIVRGKVSLAQVIKQAEG----NSWSKHKAVEIANKLEQE 898
Query: 1100 NL 1101
NL
Sbjct: 899 NL 900
>gi|79530257|ref|NP_199384.2| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|332007905|gb|AED95288.1| AAA-type ATPase family protein [Arabidopsis thaliana]
Length = 966
Score = 850 bits (2196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/791 (60%), Positives = 570/791 (72%), Gaps = 92/791 (11%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMH---KHSPILADRSI-MRDLMVL 56
M+R R+LKD+NGDI +HLRNHIHLTNCIHLKNHMH K SP+L DRS+ MRDL+VL
Sbjct: 1 MSRVASSRVLKDSNGDIGEHLRNHIHLTNCIHLKNHMHNNNKQSPVLTDRSLLMRDLVVL 60
Query: 57 QRSRSLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQI 116
QRSRSLRDPSASP +L D+ REGRR G+ RLSGSSP I
Sbjct: 61 QRSRSLRDPSASP---------NLKEDHQDS----REGRRRSGL-------RLSGSSP-I 99
Query: 117 PNFVTSKVAPVN---GVAGVEIEMIEELGEKNLVERAGLIFWK--GRQTQDVRVKTLSEQ 171
+F TSKV P + + + +EE+ E V + ++ + VKTLS+Q
Sbjct: 100 VSFGTSKVTPSDEKFDRSSRKSYRVEEVNEVYSVPSVKSVSKDRINKKVNEAIVKTLSDQ 159
Query: 172 LHDIPMDSDDLISSNVQFCGSRSGLEKTGEEHGGIRGYSNGLHRVKRRKFRGARRARTAS 231
L+++ DSDDL+S NV R +G R K R R A RA
Sbjct: 160 LNEVGGDSDDLVSCNV-------------------RPRGDGCRRRKFRGTRRAGRAVN-- 198
Query: 232 ALRD--VGGQSEMSVASNSLAQGLACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRI 289
+RD G +SEMS+ASNS+ +G E E+N++ CGIP+NWSRI
Sbjct: 199 -VRDNAAGNESEMSIASNSVPRGEK--YEGEEGGGGRDREQNMS------CGIPFNWSRI 249
Query: 290 HHRGKTFLDMAGRSLTSCGLSDSRIRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPL 349
HHRGKTFLD+AGRSL SCG+SDS+ RK + P+ SD SSS EALPL
Sbjct: 250 HHRGKTFLDIAGRSL-SCGISDSKGRKGEAGT--------PMFSDSSSSDR----EALPL 296
Query: 350 LVEASGSQSTEHAGWVHDYSGELGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQ 409
LV+ S ++ WVHDYSGELGIFAD+LLK+ DS + G+ ++N HQ
Sbjct: 297 LVD-----SADNEEWVHDYSGELGIFADNLLKNGKDSVI---GKKSSRKN-----TRWHQ 343
Query: 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC 469
+ TQKY PRTFRDL+GQNLV QALSNA+ +R+VGLLYVF+GP+GTGKTSCAR+FARALNC
Sbjct: 344 SFTQKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARALNC 403
Query: 470 QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFV 529
S EQ KPCG C+SC+S+D GK+R I+E+GPV +FDFE +LLD + Q + +
Sbjct: 404 HSTEQSKPCGVCSSCVSYDDGKNRYIREMGPVKSFDFE---NLLDKTNIRQQQKQQLVLI 460
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
FDDCDT+S D W+ +SK+VDRAPRRVVF+LV SSLD LPHII+SRCQKFFFPK+KD DII
Sbjct: 461 FDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDVDII 520
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLIS 649
+LQ IASKE I+IDKDALKL+ASRSDGSLRDAEMTLEQLSLLG RISVPLVQE+VGLIS
Sbjct: 521 DSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLLGTRISVPLVQEMVGLIS 580
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR 709
DEKLVDLLDLALSADTVNTVKNLR+IMETG+EPLALMSQLATVITDILAGSYDFTKD+ +
Sbjct: 581 DEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMSQLATVITDILAGSYDFTKDQCK 640
Query: 710 RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLP-SS 768
RKFFRRQPLSKE+MEKL+QALKTLSE+EKQLR+SNDKLTWLTAALLQLAPD+QY+LP SS
Sbjct: 641 RKFFRRQPLSKEDMEKLKQALKTLSESEKQLRVSNDKLTWLTAALLQLAPDKQYLLPHSS 700
Query: 769 SADTSFSHSPL 779
SAD SF+H+PL
Sbjct: 701 SADASFNHTPL 711
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 126/294 (42%), Positives = 163/294 (55%), Gaps = 65/294 (22%)
Query: 860 SGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEK 919
S +R +E+IWL V+ ++ NG +EFLY+EGK+ S+S G+AP VQL F S + KS AE
Sbjct: 734 SCKNRPSVEDIWLAVIENVRVNGLREFLYKEGKIFSISIGSAPMVQLMFNSPIAKSTAEN 793
Query: 920 FKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVIDSESIIGNR 979
F++ IL+AF E+++G+
Sbjct: 794 FEEHILKAF--------------------------------------------EAVLGS- 808
Query: 980 GPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPASPRETKDHAENRAD 1039
P+ + R + + +S Q E GR+EIVEV S E+
Sbjct: 809 -----PVTLEMRTESKKDLGFSSLQGLSNGERFRESGRSEIVEVADS--------ESPMT 855
Query: 1040 YSKRASLSERKKLGEQSQCQSIVRSKVSLAHVIQQAEGCTQRNGWSKRKAVSIAEKLEQE 1099
+R L E + Q+Q QSIVR KVSLA VI+QAEG N WSK KAV IA KLEQE
Sbjct: 856 RVRRKHL-EASQNQNQNQNQSIVRGKVSLAQVIKQAEG----NSWSKHKAVEIANKLEQE 910
Query: 1100 NLRLEPRSRSLLCWKASKVTRRKICRLKIRRRKPL--SLLKLVSCGKCLSSKSP 1151
NL+LEPRSRSL+CWKAS+ TRRK+ RLK+R RK SLLKLVSCGKCLS++SP
Sbjct: 911 NLKLEPRSRSLICWKASRSTRRKLSRLKVRTRKLRLHSLLKLVSCGKCLSTRSP 964
>gi|357130892|ref|XP_003567078.1| PREDICTED: uncharacterized protein LOC100837374 [Brachypodium
distachyon]
Length = 1063
Score = 850 bits (2196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/966 (52%), Positives = 647/966 (66%), Gaps = 82/966 (8%)
Query: 224 ARRARTASALRDVGGQSEMSVASNSLAQGLACPKYHMEEEDEEYGERNVTRA-PRNGCGI 282
ARRA T S D + A++S + + KY D E +R+V++ RN CGI
Sbjct: 143 ARRAGTTSKAPDRAAAAAALSANSSSQEAVCGNKYLFR--DGEELQRHVSQEDSRNVCGI 200
Query: 283 PWNWSRIHHRGKTFLDMAGRSLTSCGLSDSRIRKAGGASHSRNVPD-------------M 329
PWNWSR+HHRGK+ LD+AGRSL SCGLSD + A G
Sbjct: 201 PWNWSRLHHRGKSILDLAGRSL-SCGLSDPK--SAAGRESEAAAATASREHLSGAHSSLF 257
Query: 330 PLVSDRSSSSTNSGAEALPLLVEASGSQSTEH-AGWVHDYSGELGIFADHLLKHAVDSDL 388
P+ S+R SST+S + ALPLLVEA+ S + G YSGELGIF++ +D D
Sbjct: 258 PVKSERLPSSTSSDSHALPLLVEAATSCARNGIGGMAGSYSGELGIFSNQ--SSEMDFDF 315
Query: 389 ASEGRSGGQQNLGD--NRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLY 446
SE RSG Q + G +R+GRH++LTQK+ PRTF+++VGQ LV QALSNAV+RRK+GL+Y
Sbjct: 316 LSEARSG-QNSWGSWRSRSGRHRSLTQKFAPRTFKEVVGQGLVVQALSNAVLRRKIGLVY 374
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF 506
VFYGPHGTGKTSCAR+FA+ALNC S E P+PC C SCI+H+ GKSR++ E+GPVGN D
Sbjct: 375 VFYGPHGTGKTSCARVFAKALNCHSAEHPRPCNSCTSCIAHNVGKSRSLMEIGPVGNIDM 434
Query: 507 ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566
+ I+D+LDN++ S PS YR+F+FDDCDTL D+WS ISKV+DR+PRRVVFILVS +LD
Sbjct: 435 DGIVDVLDNVMLSPAPSHYRVFIFDDCDTLPADTWSIISKVIDRSPRRVVFILVSPNLD- 493
Query: 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626
LPHII+SRCQKFFFPK+K+ DI+ TL+WI++ E +++DKDAL+LIASRSDGSLRDAEMTL
Sbjct: 494 LPHIILSRCQKFFFPKLKECDIVNTLRWISTSESLDVDKDALRLIASRSDGSLRDAEMTL 553
Query: 627 EQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALM 686
+QLSLLGQRIS+ LVQ+LVGL+SD+KLVDLLDLALSADTVNTVK LR I E GVEPLALM
Sbjct: 554 DQLSLLGQRISLSLVQQLVGLVSDDKLVDLLDLALSADTVNTVKTLRDITEAGVEPLALM 613
Query: 687 SQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDK 746
SQLAT+ITDILAGSY F ++R RRKFF+R LSK++MEKLR ALKTLSEAEKQLR+SNDK
Sbjct: 614 SQLATIITDILAGSYTFARERLRRKFFKRPTLSKDDMEKLRLALKTLSEAEKQLRVSNDK 673
Query: 747 LTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGV 806
TWLTAALLQLAPD+QY LPSSS TSF+H L AG
Sbjct: 674 ATWLTAALLQLAPDKQYTLPSSSTSTSFNHGVL----AG-------------------SF 710
Query: 807 PMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNG 866
P + E++G+ + + ++R + +A K A GR + N
Sbjct: 711 PHKDVARHSAIEHNGNVASTSYGERRPIERTPNCHRLLASVAK----ANGRSKHNKTEN- 765
Query: 867 IEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQILQ 926
E IW VL IQ++ ++ + +EGKL SVS G APTVQ+ F S + KSKAE F+ QI+Q
Sbjct: 766 -EMIWQAVLESIQSDILRKMMAKEGKLRSVSLGTAPTVQVIFSSRVNKSKAENFRGQIMQ 824
Query: 927 AFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVIDSESIIGNRGPMAGPI 986
AFESVL S + +EIR ESKID +AG H P M A + S M + S + +G
Sbjct: 825 AFESVLHSAIILEIRYESKIDARAG-HDPSMF-AYPENDSNMTL-RRSFTKHSPLSSGGE 881
Query: 987 EISKRIPRDEGINGASS-QAQQLHSESLEMGRTEIVEVPASPRETKDHA---------EN 1036
+ +R+ +D + GASS + + + S+ + EI+EV P HA E
Sbjct: 882 SLIRRLKKDTVMKGASSTKTRWMQSDPHILTEGEIIEV--GPSHMHRHADADNGVLDNER 939
Query: 1037 RADYSKRASLSE----------RKKLGEQSQCQSIVRSKVSLAHVIQQAEGCTQRNGWSK 1086
R D + SL+ R+ +Q + SIV+ KVSLAHVI +AE C+QR GWS+
Sbjct: 940 RKDNAWEESLTSPNTESIINQGRRNGNKQRRQNSIVKRKVSLAHVIGRAEACSQR-GWSR 998
Query: 1087 RKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICRLKIRRRKPLSLLKLVSCGKCL 1146
RKA+SIAEKLEQENLRLEPRSRS+LCW+ SK TR+KI ++R + ++ +L+ CG+C+
Sbjct: 999 RKAMSIAEKLEQENLRLEPRSRSILCWRTSK-TRKKISSFRVRTGRSRAVSRLILCGRCI 1057
Query: 1147 SSKSPR 1152
S+KSPR
Sbjct: 1058 STKSPR 1063
Score = 41.6 bits (96), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 14/54 (25%)
Query: 27 LTNCIHLKNHM-------------HKHSPI-LADRSIMRDLMVLQRSRSLRDPS 66
LTNCIHL++H + SP ++ ++MRDL+ LQRSRSLRDPS
Sbjct: 22 LTNCIHLRHHHAHGVGGGAPLSSGRRRSPTSVSSAALMRDLLALQRSRSLRDPS 75
>gi|222625938|gb|EEE60070.1| hypothetical protein OsJ_12890 [Oryza sativa Japonica Group]
Length = 1050
Score = 837 bits (2162), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/909 (53%), Positives = 623/909 (68%), Gaps = 73/909 (8%)
Query: 247 NSLAQGLACPKYHMEEEDEEYGERNVTRAP----RNGCGIPWNWSRIHHRGKTFLDMAGR 302
NS +Q C ++ + E+ + P RN CGIPWNWSR+HHRGK+ LDMAGR
Sbjct: 179 NSSSQEAVCGNKYLFRDGEDGLDELQQHVPPQDSRNVCGIPWNWSRLHHRGKSILDMAGR 238
Query: 303 SLTSCGLSDSRI----RKAGGASHSRNVPD-----MPLVSDRSSSSTNSGAEALPLLVEA 353
SL +CGLSD + + GA SR + P+ S+R +SST+S ++ALPLLVEA
Sbjct: 239 SL-ACGLSDPKSAAGRKSEAGAGASRGHLNGSHSLFPVKSERLASSTSSDSDALPLLVEA 297
Query: 354 SGSQSTEHAGWVHDYSGELGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQ 413
+ + + G YSGELGIF++ ++SDL SEGRSG + + GRH++LTQ
Sbjct: 298 AAT-GARNGGIGGSYSGELGIFSNQ--TSEMESDLLSEGRSGHKSRGSQHGRGRHRSLTQ 354
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
K+ P+TF+D+VGQ+LV QALSNAV+RRK+GL+YVFYGPHGTGKTSCAR+FA+ALNC S E
Sbjct: 355 KFAPKTFKDVVGQSLVVQALSNAVLRRKIGLVYVFYGPHGTGKTSCARVFAKALNCHSPE 414
Query: 474 QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDC 533
P+PC C SCI+H+ GKSR++ E+GPVGN D + I+D+LDN++ S PS YR+F+FDDC
Sbjct: 415 HPRPCDSCTSCIAHNLGKSRSVMEIGPVGNIDMDGIVDVLDNVMLSPAPSHYRVFIFDDC 474
Query: 534 DTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQ 593
DTL D+WS ISKVVDRAPRRVVFILVS +LD LPHII+SRCQKFFFPK+K+ DI+ TLQ
Sbjct: 475 DTLPADTWSLISKVVDRAPRRVVFILVSPNLD-LPHIILSRCQKFFFPKLKECDIVNTLQ 533
Query: 594 WIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKL 653
WI++ E +++D+DALKLIASRSDGSLRDAEMTL+QLSLLGQRIS+ LVQELVGL+SD+KL
Sbjct: 534 WISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISLSLVQELVGLVSDDKL 593
Query: 654 VDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFF 713
VDLLDLALSADTVNTVK LR I ETGV+PLALMSQLAT+ITDILAGSY FT++R RRKFF
Sbjct: 594 VDLLDLALSADTVNTVKTLRDITETGVDPLALMSQLATIITDILAGSYTFTRERLRRKFF 653
Query: 714 RRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTS 773
+R LSK++MEKLRQALKTLSEAEKQLR+SNDK TWLTAALLQLAPD+QYVLPSSS+ TS
Sbjct: 654 KRPTLSKDDMEKLRQALKTLSEAEKQLRVSNDKTTWLTAALLQLAPDKQYVLPSSSS-TS 712
Query: 774 FSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGIS 833
+H L AG S + + ++ LE+ +GNM
Sbjct: 713 LNHGVL----AG--------------SFPDRDMAIHSALEH----------NGNMASTSY 744
Query: 834 LDRK--RHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREG 891
+R+ HT + L +P + S NS+ E IW VL IQ++ ++ + +EG
Sbjct: 745 RERRPVEHTSNSHLLSTSAPRA---NEQSRNSKIENELIWHAVLESIQSDTLRKIMAKEG 801
Query: 892 KLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAG 951
+L SVS G APTVQL F S + KSKAE ++ QILQAFESVL S + +EIR ESK D +A
Sbjct: 802 RLSSVSLGTAPTVQLIFSSRVNKSKAENYRGQILQAFESVLRSAIILEIRYESKNDVRAS 861
Query: 952 FHLPLMLPASKDGSSQMVIDSESIIGNRGPMAGPIEISKRIPRDEGINGASSQAQQLHSE 1011
H P + ++ SS + S + +G + +R+ +D +SS+ + S+
Sbjct: 862 -HAPAVFSHGENESSNTTL-RRSFTKHSPLSSGGENLRRRLKKDRA---SSSKTTWMQSD 916
Query: 1012 SLEMGRTEIVEVPASPRETKDHAEN---RADYSKRASLSERKKLG-------------EQ 1055
+ EI+EV S D N + ++ ++ E + L +Q
Sbjct: 917 PHILTEGEIIEVGPSHMHWHDETNNDVHNVNQRRKDNVWEEESLASPNSKANQGRNGNKQ 976
Query: 1056 SQCQSIVRSKVSLAHVIQQAEGCTQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKA 1115
+ SIV+ KVSLAHVI +AE C+QR GWS++KA+SIAEKLEQENLRLEPRSRS+LCW+
Sbjct: 977 RRQNSIVKGKVSLAHVIGKAEACSQRGGWSRQKALSIAEKLEQENLRLEPRSRSILCWRT 1036
Query: 1116 SKVTRRKIC 1124
S+ R+ IC
Sbjct: 1037 SRTRRKVIC 1045
>gi|334188215|ref|NP_001190476.1| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|332007906|gb|AED95289.1| AAA-type ATPase family protein [Arabidopsis thaliana]
Length = 956
Score = 822 bits (2124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/791 (59%), Positives = 561/791 (70%), Gaps = 102/791 (12%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMH---KHSPILADRSI-MRDLMVL 56
M+R R+LKD+NGDI +HLRNHIHLTNCIHLKNHMH K SP+L DRS+ MRDL+VL
Sbjct: 1 MSRVASSRVLKDSNGDIGEHLRNHIHLTNCIHLKNHMHNNNKQSPVLTDRSLLMRDLVVL 60
Query: 57 QRSRSLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQI 116
QRSRSLRDPSASP +L D+ REGRR G+ RLSGSSP I
Sbjct: 61 QRSRSLRDPSASP---------NLKEDHQDS----REGRRRSGL-------RLSGSSP-I 99
Query: 117 PNFVTSKVAPVN---GVAGVEIEMIEELGEKNLVERAGLIFWK--GRQTQDVRVKTLSEQ 171
+F TSKV P + + + +EE+ E V + ++ + VKTLS+Q
Sbjct: 100 VSFGTSKVTPSDEKFDRSSRKSYRVEEVNEVYSVPSVKSVSKDRINKKVNEAIVKTLSDQ 159
Query: 172 LHDIPMDSDDLISSNVQFCGSRSGLEKTGEEHGGIRGYSNGLHRVKRRKFRGARRARTAS 231
L+++ DSDDL+S NV R +G R K R R A RA
Sbjct: 160 LNEVGGDSDDLVSCNV-------------------RPRGDGCRRRKFRGTRRAGRAVN-- 198
Query: 232 ALRD--VGGQSEMSVASNSLAQGLACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRI 289
+RD G +SEMS+ASNS+ +G E E+N++ CGIP+NWSRI
Sbjct: 199 -VRDNAAGNESEMSIASNSVPRGEK--YEGEEGGGGRDREQNMS------CGIPFNWSRI 249
Query: 290 HHRGKTFLDMAGRSLTSCGLSDSRIRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPL 349
HHRGKTFLD+AGRSL SCG+SDS+ RK + P+ SD SSS EALPL
Sbjct: 250 HHRGKTFLDIAGRSL-SCGISDSKGRKGEAGT--------PMFSDSSSSDR----EALPL 296
Query: 350 LVEASGSQSTEHAGWVHDYSGELGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQ 409
LV+ S ++ WVHDYSGELGIFAD+LLK+ DS + G+ ++N HQ
Sbjct: 297 LVD-----SADNEEWVHDYSGELGIFADNLLKNGKDSVI---GKKSSRKN-----TRWHQ 343
Query: 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC 469
+ TQKY PRTFRDL+GQNLV QALSNA+ +R+VGLLYVF+GP+GTGKTSCAR+FARALNC
Sbjct: 344 SFTQKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARALNC 403
Query: 470 QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFV 529
S EQ KPCG C+SC+S+D GK+R I+E+GPV +FDFE +LLD + Q + +
Sbjct: 404 HSTEQSKPCGVCSSCVSYDDGKNRYIREMGPVKSFDFE---NLLDKTNIRQQQKQQLVLI 460
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
FDDCDT+S D W+ +SK+VDRAPRRVVF+LV SSLD LPHII+SRCQKFFFPK+KD DII
Sbjct: 461 FDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDVDII 520
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLIS 649
+LQ IASKE I+IDKDALKL+ASRSDGSLRDAEMTLEQLSLLG RISVPLVQE+VGLIS
Sbjct: 521 DSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLLGTRISVPLVQEMVGLIS 580
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR 709
DEKLVDLLDLALSADTVNTVKNLR+IMETG+EPLALMSQLATVITDILAGSYDFTKD+
Sbjct: 581 DEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMSQLATVITDILAGSYDFTKDQ-- 638
Query: 710 RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLP-SS 768
LSKE+MEKL+QALKTLSE+EKQLR+SNDKLTWLTAALLQLAPD+QY+LP SS
Sbjct: 639 --------LSKEDMEKLKQALKTLSESEKQLRVSNDKLTWLTAALLQLAPDKQYLLPHSS 690
Query: 769 SADTSFSHSPL 779
SAD SF+H+PL
Sbjct: 691 SADASFNHTPL 701
Score = 189 bits (480), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 126/294 (42%), Positives = 163/294 (55%), Gaps = 65/294 (22%)
Query: 860 SGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEK 919
S +R +E+IWL V+ ++ NG +EFLY+EGK+ S+S G+AP VQL F S + KS AE
Sbjct: 724 SCKNRPSVEDIWLAVIENVRVNGLREFLYKEGKIFSISIGSAPMVQLMFNSPIAKSTAEN 783
Query: 920 FKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVIDSESIIGNR 979
F++ IL+AF E+++G+
Sbjct: 784 FEEHILKAF--------------------------------------------EAVLGS- 798
Query: 980 GPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPASPRETKDHAENRAD 1039
P+ + R + + +S Q E GR+EIVEV S E+
Sbjct: 799 -----PVTLEMRTESKKDLGFSSLQGLSNGERFRESGRSEIVEVADS--------ESPMT 845
Query: 1040 YSKRASLSERKKLGEQSQCQSIVRSKVSLAHVIQQAEGCTQRNGWSKRKAVSIAEKLEQE 1099
+R L E + Q+Q QSIVR KVSLA VI+QAEG N WSK KAV IA KLEQE
Sbjct: 846 RVRRKHL-EASQNQNQNQNQSIVRGKVSLAQVIKQAEG----NSWSKHKAVEIANKLEQE 900
Query: 1100 NLRLEPRSRSLLCWKASKVTRRKICRLKIRRRKPL--SLLKLVSCGKCLSSKSP 1151
NL+LEPRSRSL+CWKAS+ TRRK+ RLK+R RK SLLKLVSCGKCLS++SP
Sbjct: 901 NLKLEPRSRSLICWKASRSTRRKLSRLKVRTRKLRLHSLLKLVSCGKCLSTRSP 954
>gi|413951159|gb|AFW83808.1| hypothetical protein ZEAMMB73_506142, partial [Zea mays]
Length = 1039
Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/881 (54%), Positives = 607/881 (68%), Gaps = 78/881 (8%)
Query: 277 RNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDSRI----RKAGGASHSRNV----PD 328
RN CGIPWNWSR+HHRGK+ +DMAGRSL SCGLSDSR + GA+ +V P
Sbjct: 197 RNVCGIPWNWSRLHHRGKSIIDMAGRSL-SCGLSDSRSAAGRKSEAGAASGGHVNASRPL 255
Query: 329 MPLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAGWVH-DYSGELGIFADHLLKHAVDSD 387
P S+R +SST+S ++ALPLLV A+ S + H G + YSGELGIF++ + +DSD
Sbjct: 256 FPAKSERLASSTSSDSDALPLLVGAATSGARNHIGAISGSYSGELGIFSNQTSQ--MDSD 313
Query: 388 LASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYV 447
L SE +SG + + GRH++LTQK+ P+TF+D+VGQ+LV QALSNA++RRK+GL+YV
Sbjct: 314 LLSESQSGQKSQASQHGRGRHRSLTQKFAPKTFKDVVGQSLVVQALSNAILRRKIGLVYV 373
Query: 448 FYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFE 507
FYGPHGTGKTSCAR+FA+ALNC S E P+PC C CI+H+ GKSR++ E+GPVGN D +
Sbjct: 374 FYGPHGTGKTSCARVFAKALNCLSSEHPRPCDSCTVCIAHNLGKSRSLMEIGPVGNIDID 433
Query: 508 SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDAL 567
I+D+LDN++ S PS YR+F+FDDCDTL D+WSAISKVVDRAPRRVVFILVS +L+ L
Sbjct: 434 GIVDVLDNVMLSPAPSHYRVFIFDDCDTLPADTWSAISKVVDRAPRRVVFILVSPNLE-L 492
Query: 568 PHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLE 627
PHII+SRCQKFFFPK +++DI+ TLQWI + E +++DKDALKLIASRSDGSLRDAEMTL+
Sbjct: 493 PHIILSRCQKFFFPKHRESDIVNTLQWICTSESLDVDKDALKLIASRSDGSLRDAEMTLD 552
Query: 628 QLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMS 687
QLSLLGQRIS+ LVQELVGL+SD+KLVDLLDLALSADTV TVK LR I ETGVEPLALMS
Sbjct: 553 QLSLLGQRISLTLVQELVGLVSDDKLVDLLDLALSADTVKTVKTLRDITETGVEPLALMS 612
Query: 688 QLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKL 747
QLAT+ITDILAGSY F ++R +RKFF+R LSKE+M KLRQALK LSE EKQLR+S+DK
Sbjct: 613 QLATIITDILAGSYAFNRERPKRKFFKRPTLSKEDMGKLRQALKILSETEKQLRVSSDKT 672
Query: 748 TWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVP 807
TWLTAALLQLAPD+QY+LPSSS TS +H L + + RG+ R
Sbjct: 673 TWLTAALLQLAPDKQYLLPSSSTSTSLNHGLL-VGSFPDRGIGRSSA------------- 718
Query: 808 MNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGI 867
E+ + + +G HT +G L S S G + N +
Sbjct: 719 ---------VEHKCNLAGTSYGEGTV----EHTENGHVL---STSSVKGNEGTKNRKADN 762
Query: 868 EEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQILQA 927
E IW VL IQ++ ++ + +E +L SVS G APTVQL F S + K KAE ++ QILQA
Sbjct: 763 EMIWQAVLESIQSDTLRKMMAKEARLNSVSLGTAPTVQLIFSSRINKFKAENYRAQILQA 822
Query: 928 FESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVIDS---ESIIGNRGPMAG 984
FESVL S + +EIR ESK DT+AG H+P M P ++ SS + + S S + +RG
Sbjct: 823 FESVLHSAIILEIRYESKNDTKAG-HVPSMFPYPENDSSNVTLRSFTKHSPLSSRGE--- 878
Query: 985 PIEISKRIPRDEGINGA-SSQAQQLHSESLEMGRTEIVEVPASPRETKDHAENRAD---- 1039
+ R+ +D + GA SS+ + S+ + EI+EV P HA+ +
Sbjct: 879 --NLITRLKKDSAVKGANSSKTTWMQSDPHILTEGEIIEV--GPSHMHWHAQTNSGVLDI 934
Query: 1040 --------YSKRASLSERKKL---------GEQSQCQSIVRSKVSLAHVIQQAEGCTQRN 1082
+ + AS S ++ Q Q SIV+ KVSLAHVI +AE C+Q+
Sbjct: 935 NGRKKENVWEEEASSSPNQESVTNQKGRNGNRQRQQNSIVKGKVSLAHVIGRAEACSQQG 994
Query: 1083 GWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKI 1123
GWS+RKA+SIA+KLEQENLRLEP+S SLLCW+ S+ TRRK+
Sbjct: 995 GWSRRKAISIAQKLEQENLRLEPKS-SLLCWRTSR-TRRKV 1033
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 20 HLRNHIHLTNCIHLKNHMH----------------KHSPI-LADRSIMRDLMVLQRSRSL 62
HLR H HLTNCIHL++H + SP +A ++MRDL+ LQRSRSL
Sbjct: 14 HLRGHAHLTNCIHLRHHHGHAHGGAGAGGASSSGWRRSPASVASATLMRDLLALQRSRSL 73
Query: 63 RDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVG 99
RDPS S D GD+ + + RRS G
Sbjct: 74 RDPSTRRSVESSRVAADPDAGSGDDVDLPAKSRRSAG 110
>gi|242058597|ref|XP_002458444.1| hypothetical protein SORBIDRAFT_03g033660 [Sorghum bicolor]
gi|241930419|gb|EES03564.1| hypothetical protein SORBIDRAFT_03g033660 [Sorghum bicolor]
Length = 1026
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/860 (54%), Positives = 593/860 (68%), Gaps = 76/860 (8%)
Query: 277 RNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDSRI---RK-----AGGASHSRNVPD 328
RN CGIPWNWSR+HHRGK+ LDMAGRSL SCGLSDS+ RK A G + + P
Sbjct: 208 RNVCGIPWNWSRLHHRGKSILDMAGRSL-SCGLSDSKSAAGRKSEEAAASGGRVNASRPL 266
Query: 329 MPLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAGWVH-DYSGELGIFADHLLKHAVDSD 387
P+ S+R +SST+S ++ALPLLVEA+ S + G + YSGELGIF++ + +DSD
Sbjct: 267 FPVKSERLASSTSSDSDALPLLVEAATSGARNRIGAISGSYSGELGIFSNQTSE--MDSD 324
Query: 388 LASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYV 447
L SE +SG + + + GRH++LTQK+ P+TF+D+VGQ+LV QALSNA++RRK+GL+YV
Sbjct: 325 LLSESQSGQKSHASQHGRGRHRSLTQKFAPKTFKDVVGQSLVVQALSNAILRRKIGLVYV 384
Query: 448 FYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFE 507
FYGPHGTGKTSCAR+FA+ALNC S E P+PC C SCI+H+ GKSR++ E+GPVGN D +
Sbjct: 385 FYGPHGTGKTSCARVFAKALNCLSSEHPRPCDSCTSCIAHNLGKSRSLMEIGPVGNIDMD 444
Query: 508 SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDAL 567
I+D+LDN++ S PS YR+F+FDDCDTL PD+WSAISKVVDRAPRRVVFILVS +L+ L
Sbjct: 445 GIVDVLDNVMLSPAPSHYRVFIFDDCDTLPPDTWSAISKVVDRAPRRVVFILVSPNLE-L 503
Query: 568 PHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLE 627
PHII+SRCQKFFFPK++++DI+ TLQWI + E +++DKDALKLIASRSDGSLRDAEMTL+
Sbjct: 504 PHIILSRCQKFFFPKLRESDIVNTLQWICTSESLDVDKDALKLIASRSDGSLRDAEMTLD 563
Query: 628 QLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMS 687
QLSLLGQRIS+ LVQELVGL+SD+KLVDLLDLALSADTVNTVK LR I ETGVEPLALMS
Sbjct: 564 QLSLLGQRISLSLVQELVGLVSDDKLVDLLDLALSADTVNTVKTLRDITETGVEPLALMS 623
Query: 688 QLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKL 747
QLAT+ITDILAGSY FT++R RRKFF+R LSKE+MEKLRQALKTLSEAEKQLR+S+DK
Sbjct: 624 QLATIITDILAGSYAFTRERPRRKFFKRPTLSKEDMEKLRQALKTLSEAEKQLRVSSDKA 683
Query: 748 TWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVP 807
TWLTAALLQLAPD+QY+LPSSS TS +H L G R G + + +K
Sbjct: 684 TWLTAALLQLAPDKQYLLPSSSTSTSLNHGVL-----VGSFPDRVIGRTSAVEHK----- 733
Query: 808 MNVRLENFHAENSGDFIDGNMRKGISLDRKR---HTGSGMALQQKSP-LSAGGRHVSGNS 863
GN+ G S +R HT +G L S + G +H +
Sbjct: 734 ------------------GNV-AGTSYGERRTVEHTENGHVLSTSSVRANEGAKHRKAEN 774
Query: 864 RNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQ 923
E IW VL IQ++ ++ + +E +L SVS G APTVQL F S + KSKAE ++ Q
Sbjct: 775 ----EMIWQAVLESIQSDSLRKMMAKEARLNSVSLGTAPTVQLIFSSRINKSKAENYRAQ 830
Query: 924 ILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVIDSESIIGNRGPMA 983
ILQAFESVL + + +EIR ESK D + H P M P + SS + S + +
Sbjct: 831 ILQAFESVLRAAIILEIRYESKNDAKTS-HAPSMFPYPEYDSSNATL-RRSFTKHSPLSS 888
Query: 984 GPIEISKRIPRDEGINGA-SSQAQQLHSESLEMGRTEIVEVPASPRETKDHA-------- 1034
G + R+ +D + GA SS+ + + S+ + EI+EV P HA
Sbjct: 889 GGENLITRLKKDSVVKGANSSKTRWMQSDPHILTEGEIIEV--GPSHMHWHAQTNNGVLD 946
Query: 1035 -----------ENRADYSKRASLSERKKL--GEQSQCQSIVRSKVSLAHVIQQAEGCTQR 1081
E + + S++ RK Q + SIV+ KVSLAHVI +AE C+QR
Sbjct: 947 INERRKENVWEEEASSSPNQDSVTNRKVRDGNRQRRQNSIVKGKVSLAHVIGRAEACSQR 1006
Query: 1082 NGWSKRKAVSIAEKLEQENL 1101
GWS+RKA+SIAEKLEQENL
Sbjct: 1007 GGWSRRKAISIAEKLEQENL 1026
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 35/64 (54%), Gaps = 17/64 (26%)
Query: 20 HLRNHIHLTNCIHLKNHMHKHSPI-----------------LADRSIMRDLMVLQRSRSL 62
HLR H HLTNCIHL++H +A S+MRDL+ LQRSRSL
Sbjct: 17 HLRGHAHLTNCIHLRHHHGHAHGHGGAGGASSSGRRRSPASVASASLMRDLLALQRSRSL 76
Query: 63 RDPS 66
RDPS
Sbjct: 77 RDPS 80
>gi|218189003|gb|EEC71430.1| hypothetical protein OsI_03625 [Oryza sativa Indica Group]
Length = 815
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/852 (54%), Positives = 593/852 (69%), Gaps = 70/852 (8%)
Query: 299 MAGRSLTSCGLSDSRI----RKAGGASHSRNVPD-----MPLVSDRSSSSTNSGAEALPL 349
MAGRSL +CGLSD + + GA SR + P+ S+R +SST+S ++ALPL
Sbjct: 1 MAGRSL-ACGLSDPKSAAGRKSEAGAGASRGHLNGSHSLFPVKSERLASSTSSDSDALPL 59
Query: 350 LVEASGSQSTEHAGWVHDYSGELGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQ 409
LVEA+ + S + G YSGELGIF++ ++SDL SEGRSG + + GRH+
Sbjct: 60 LVEAAATGS-RNGGIGGSYSGELGIFSNQ--TSEMESDLLSEGRSGHKSRGSQHGRGRHR 116
Query: 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC 469
+LTQK+ P+ F+D+VGQ+LV QALSNAV+RRK+GL+YVFYGPHGTGKTSCAR+FA+ALNC
Sbjct: 117 SLTQKFAPKAFKDVVGQSLVVQALSNAVLRRKIGLVYVFYGPHGTGKTSCARVFAKALNC 176
Query: 470 QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFV 529
S E P+PC C SCI+H+ GKSR++ E+GPVGN D + I+D+LDN++ S PS YR+F+
Sbjct: 177 HSPEHPRPCDSCTSCIAHNLGKSRSVMEIGPVGNIDMDGIVDVLDNVMLSPAPSHYRVFI 236
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
FDDCDTL D+WS ISKVVDRAPRRVVFILVS +LD LPHII+SRCQKFFFPK+K+ DI+
Sbjct: 237 FDDCDTLPADTWSLISKVVDRAPRRVVFILVSPNLD-LPHIILSRCQKFFFPKLKECDIV 295
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLIS 649
TLQWI++ E +++D+DALKLIASRSDGSLRDAEMTL+QLSLLGQRIS+ LVQELVGL+S
Sbjct: 296 NTLQWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISLSLVQELVGLVS 355
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR 709
D+KLVDLLDLALSADTVNTVK LR I ETGV+PLALMSQLAT+ITDILAGSY FT++R R
Sbjct: 356 DDKLVDLLDLALSADTVNTVKTLRDITETGVDPLALMSQLATIITDILAGSYTFTRERLR 415
Query: 710 RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSS 769
RKFF+R LSK++MEKLRQALKTLSEAEKQLR+SNDK TWLTAALLQLAPD+QYVLPSSS
Sbjct: 416 RKFFKRPTLSKDDMEKLRQALKTLSEAEKQLRVSNDKTTWLTAALLQLAPDKQYVLPSSS 475
Query: 770 ADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMR 829
+ TS +H L AG S + + ++ LE+ +GNM
Sbjct: 476 S-TSLNHGVL----AG--------------SFPDRDMAIHSALEH----------NGNMA 506
Query: 830 KGISLDRK--RHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFL 887
+R+ HT + L +P + S NS+ E IW VL IQ++ ++ +
Sbjct: 507 STSYRERRPVEHTSNSHLLSTSAPRA---NEQSRNSKIENELIWHAVLESIQSDTLRKIM 563
Query: 888 YREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKID 947
+EG+L SVS G APTVQL F S + KSKAE +++QILQAFESVL S + +EIR ESK D
Sbjct: 564 AKEGRLSSVSLGTAPTVQLIFSSRVNKSKAENYREQILQAFESVLRSAIILEIRYESKND 623
Query: 948 TQAGFHLPLMLPASKDGSSQMVIDSESIIGNRGPMAGPIEISKRIPRDEGINGASSQAQQ 1007
+A H P + ++ SS + S + +G + +R+ +D +SS+
Sbjct: 624 VRAS-HAPAVFSHGENESSNTTL-RRSFTKHSPLSSGGENLRRRLKKDRA---SSSKTTW 678
Query: 1008 LHSESLEMGRTEIVEVPASPRETKDHAEN---RADYSKRASLSERKKLG----------- 1053
+ S+ + EI+EV S D N + ++ ++ E + L
Sbjct: 679 MQSDPHILTEGEIIEVGPSHMHWHDETNNDVHNVNQRRKDNVWEEESLASPNSKANQGRN 738
Query: 1054 --EQSQCQSIVRSKVSLAHVIQQAEGCTQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLL 1111
+Q + SIV+ KVSLAHVI +AE C+QR GWS++KA+SIAEKLEQENLRLEPRSRS+L
Sbjct: 739 GNKQRRQNSIVKGKVSLAHVIGKAEACSQRGGWSRQKALSIAEKLEQENLRLEPRSRSIL 798
Query: 1112 CWKASKVTRRKI 1123
CW+ S+ TRRK+
Sbjct: 799 CWRTSR-TRRKV 809
>gi|222632318|gb|EEE64450.1| hypothetical protein OsJ_19296 [Oryza sativa Japonica Group]
Length = 1012
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/596 (61%), Positives = 455/596 (76%), Gaps = 44/596 (7%)
Query: 215 RVKRRKFRGA--RRARTASAL-----RDVGGQSEMSVASNSLAQGLACPKYHM------- 260
R RR+F+G RRA ASA R V G + +SV NS +Q C ++
Sbjct: 118 RGPRRRFKGGAGRRAAPASATGGALDRGVDGAAAVSV--NSSSQEAVCGNKYLFGVVGGD 175
Query: 261 ----EEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDSRIR- 315
+E E ++ RN CGIPWNWSRIHHRGK+FLDMAGRS SCGLSD +
Sbjct: 176 DDDDDECGVELQRPQASQDSRNVCGIPWNWSRIHHRGKSFLDMAGRSF-SCGLSDPKSAS 234
Query: 316 ---------KAGGASH---SRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAG 363
AG H SR+ P P+ + +ST+S +++LPLLV+ + G
Sbjct: 235 AARRSIAATSAGSCGHMDGSRSHPHFPVTA--RLTSTSSDSDSLPLLVDGVRNGI---GG 289
Query: 364 WVHDYSGELGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDL 423
+SGELGIF++ + +DSDLASE RSG Q++ G +R GRHQ+LTQKY P+TF+D+
Sbjct: 290 IARSFSGELGIFSNQTSE--LDSDLASEARSG-QRSRGSHR-GRHQSLTQKYSPKTFKDM 345
Query: 424 VGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483
+GQ+LV QALSNA+++RK+GL+YVFYGPHGTGKTSCAR+FA+ALNC S E P+PC C S
Sbjct: 346 IGQSLVVQALSNAILKRKIGLVYVFYGPHGTGKTSCARVFAKALNCHSPEHPRPCDSCAS 405
Query: 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSA 543
CI+H+ GKSR++ E+GPVGN D +SI+D+LDN++ S P+Q+R+F+ DDC+TL PD+WS
Sbjct: 406 CIAHNLGKSRSLVEIGPVGNIDLDSIVDILDNVMLSPVPTQHRVFIVDDCNTLPPDTWSV 465
Query: 544 ISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEI 603
ISKV++RAPRRVVFIL+S +LD LPHII+SRCQKFFFPK+K+ DI+ TLQWI++ EG+++
Sbjct: 466 ISKVIERAPRRVVFILISPNLD-LPHIIVSRCQKFFFPKLKECDIVNTLQWISTSEGLDV 524
Query: 604 DKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSA 663
D+DALKLIASRSDGSLRDAEMTL+QLSLLGQRIS+ LVQELVGL+SD+KLVDLLDLALSA
Sbjct: 525 DRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISMSLVQELVGLVSDDKLVDLLDLALSA 584
Query: 664 DTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEM 723
DTVNTVK LR I ETGVEPLALMSQLAT+ITDILAG+Y FT++R RRKFF+ LSK++M
Sbjct: 585 DTVNTVKTLRDITETGVEPLALMSQLATIITDILAGTYAFTQERVRRKFFKCPTLSKDDM 644
Query: 724 EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPL 779
EKLRQALKTLSEAEKQLR+SNDK+TWLTAALLQLAPD+QYVLPSSS SF+ L
Sbjct: 645 EKLRQALKTLSEAEKQLRVSNDKMTWLTAALLQLAPDKQYVLPSSSTSASFNQGLL 700
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 149/237 (62%), Gaps = 14/237 (5%)
Query: 899 GAAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLML 958
G APTVQL F S + KSKAE+ ++Q+L AFESVL S +T+EIR E K D +AG H+P +
Sbjct: 747 GPAPTVQLMFSSRVNKSKAERSREQVLHAFESVLASAITLEIRYEPKDDARAG-HVPAIS 805
Query: 959 PASKDGSSQMVI----DSESIIGNRGPMAGPIEISKRIPRDEGINGASS-QAQQLHSESL 1013
P +D +S + + S +RG + +R+ +D ++GA+S Q + + S+
Sbjct: 806 PYPEDSTSNVALRRSFTRHSSASSRGE-----NLIRRLQKDNVVHGANSNQTRWVQSDPH 860
Query: 1014 EMGRTEIVEVPASPRETKDHAENRADYSKRASLSERKKL--GEQSQCQSIVRSKVSLAHV 1071
+ EI+EV S + N A K + + +++ E + SIVR KVSLAHV
Sbjct: 861 ILTEGEIIEVGPSQVDWHSEPNNSAGVRKENIVLQGREVVNNEHGRQNSIVRGKVSLAHV 920
Query: 1072 IQQAEGCTQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICRLKI 1128
I +AE C+Q+ GWS++KA+SIAEKLEQENLRLEP+S SLLCWKAS TRRK+ + I
Sbjct: 921 INKAETCSQQGGWSRQKAMSIAEKLEQENLRLEPKS-SLLCWKASSTTRRKVMLINI 976
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 38/64 (59%), Gaps = 18/64 (28%)
Query: 20 HLRNHIHLTNCIHLKNHMHKH-------------SPI----LADRSIMRDLMVLQRSRSL 62
H+R H HLTNCIHL++H H H SP A ++MRDL+ LQRSRSL
Sbjct: 25 HMRGHAHLTNCIHLRHH-HAHGLGAGSASSGRRRSPTGSSASASAALMRDLLALQRSRSL 83
Query: 63 RDPS 66
RDPS
Sbjct: 84 RDPS 87
>gi|115465047|ref|NP_001056123.1| Os05g0529600 [Oryza sativa Japonica Group]
gi|45642717|gb|AAS72345.1| putative DNA polymerase III gamma chain [Oryza sativa Japonica
Group]
gi|52353403|gb|AAU43971.1| putative DNA polymerase III gamma chain [Oryza sativa Japonica
Group]
gi|113579674|dbj|BAF18037.1| Os05g0529600 [Oryza sativa Japonica Group]
Length = 1023
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/596 (61%), Positives = 454/596 (76%), Gaps = 44/596 (7%)
Query: 215 RVKRRKFRGA--RRARTASAL-----RDVGGQSEMSVASNSLAQGLACPKYHM------- 260
R RR+F+G RRA ASA R V G + +SV NS +Q C ++
Sbjct: 141 RGPRRRFKGGAGRRAAPASATGGALDRGVDGAAAVSV--NSSSQEAVCGNKYLFGVVGGD 198
Query: 261 ----EEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDSRIR- 315
+E E ++ RN CGIPWNWSRIHHRGK+FLDMAGRS SCGLSD +
Sbjct: 199 DDDDDECGVELQRPQASQDSRNVCGIPWNWSRIHHRGKSFLDMAGRSF-SCGLSDPKSAS 257
Query: 316 ---------KAGGASH---SRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAG 363
AG H SR+ P P+ + +ST+S +++LPLLV+ G
Sbjct: 258 AARRSIAATSAGSCGHMDGSRSHPHFPVTA--RLTSTSSDSDSLPLLVDGV---RNGIGG 312
Query: 364 WVHDYSGELGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDL 423
+SGELGIF++ + +DSDLASE RSG Q++ G +R GRHQ+LTQKY P+TF+D+
Sbjct: 313 IARSFSGELGIFSNQTSE--LDSDLASEARSG-QRSRGSHR-GRHQSLTQKYSPKTFKDM 368
Query: 424 VGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483
+GQ+LV QALSNA+++RK+GL+YVFYGPHGTGKTSCAR+FA+ALNC S E P+PC C S
Sbjct: 369 IGQSLVVQALSNAILKRKIGLVYVFYGPHGTGKTSCARVFAKALNCHSPEHPRPCDSCAS 428
Query: 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSA 543
CI+H+ GKSR++ E+GPVGN D +SI+D+LDN++ S P+Q+R+F+ DDC+TL PD+WS
Sbjct: 429 CIAHNLGKSRSLVEIGPVGNIDLDSIVDILDNVMLSPVPTQHRVFIVDDCNTLPPDTWSV 488
Query: 544 ISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEI 603
ISKV++RAPRRVVFIL+S +LD LPHII+SRCQKFFFPK+K+ DI+ TLQWI++ EG+++
Sbjct: 489 ISKVIERAPRRVVFILISPNLD-LPHIIVSRCQKFFFPKLKECDIVNTLQWISTSEGLDV 547
Query: 604 DKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSA 663
D+DALKLIASRSDGSLRDAEMTL+QLSLLGQRIS+ LVQELVGL+SD+KLVDLLDLALSA
Sbjct: 548 DRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISMSLVQELVGLVSDDKLVDLLDLALSA 607
Query: 664 DTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEM 723
DTVNTVK LR I ETGVEPLALMSQLAT+ITDILAG+Y FT++R RRKFF+ LSK++M
Sbjct: 608 DTVNTVKTLRDITETGVEPLALMSQLATIITDILAGTYAFTQERVRRKFFKCPTLSKDDM 667
Query: 724 EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPL 779
EKLRQALKTLSEAEKQLR+SNDK+TWLTAALLQLAPD+QYVLPSSS SF+ L
Sbjct: 668 EKLRQALKTLSEAEKQLRVSNDKMTWLTAALLQLAPDKQYVLPSSSTSASFNQGLL 723
Score = 109 bits (272), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 112/195 (57%), Gaps = 14/195 (7%)
Query: 899 GAAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLML 958
G APTVQL F S + KSKAE+ ++Q+L AFESVL S +T+EIR E K D +AG H+P +
Sbjct: 770 GPAPTVQLMFSSRVNKSKAERSREQVLHAFESVLASAITLEIRYEPKDDARAG-HVPAIS 828
Query: 959 PASKDGSSQMVI----DSESIIGNRGPMAGPIEISKRIPRDEGINGA-SSQAQQLHSESL 1013
P +D +S + + S +RG + +R+ +D ++GA S+Q + + S+
Sbjct: 829 PYPEDSTSNVALRRSFTRHSSASSRGE-----NLIRRLQKDNVVHGANSNQTRWVQSDPH 883
Query: 1014 EMGRTEIVEVPASPRETKDHAENRADYSKRASLSERKKL--GEQSQCQSIVRSKVSLAHV 1071
+ EI+EV S + N A K + + +++ E + SIVR KVSLAHV
Sbjct: 884 ILTEGEIIEVGPSQVDWHSEPNNSAGVRKENIVLQGREVVNNEHGRQNSIVRGKVSLAHV 943
Query: 1072 IQQAEGCTQRNG-WS 1085
I +AE C+Q+ G WS
Sbjct: 944 INKAETCSQQGGDWS 958
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 38/64 (59%), Gaps = 18/64 (28%)
Query: 20 HLRNHIHLTNCIHLKNHMHKH-------------SPI----LADRSIMRDLMVLQRSRSL 62
H+R H HLTNCIHL++H H H SP A ++MRDL+ LQRSRSL
Sbjct: 25 HMRGHAHLTNCIHLRHH-HAHGLGAGSASSGRRRSPTGSSASASAALMRDLLALQRSRSL 83
Query: 63 RDPS 66
RDPS
Sbjct: 84 RDPS 87
>gi|115439733|ref|NP_001044146.1| Os01g0730900 [Oryza sativa Japonica Group]
gi|57899145|dbj|BAD87007.1| putative DNA polymerase III subunit gamma/tau [Oryza sativa
Japonica Group]
gi|113533677|dbj|BAF06060.1| Os01g0730900 [Oryza sativa Japonica Group]
Length = 622
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 247/419 (58%), Positives = 316/419 (75%), Gaps = 18/419 (4%)
Query: 244 VASNSLAQGLACPKYHMEEEDEEYGERNVTRAP----RNGCGIPWNWSRIHHRGKTFLDM 299
++ NS +Q C ++ + E+ + P RN CGIPWNWSR+HHRGK+ LDM
Sbjct: 176 LSVNSSSQEAVCGNKYLFRDGEDGLDELQQHVPPQDSRNVCGIPWNWSRLHHRGKSILDM 235
Query: 300 AGRSLTSCGLSDSRI----RKAGGASHSRNVPD-----MPLVSDRSSSSTNSGAEALPLL 350
AGRSL +CGLSD + + GA SR + P+ S+R +SST+S ++ALPLL
Sbjct: 236 AGRSL-ACGLSDPKSAAGRKSEAGAGASRGHLNGSHSLFPVKSERLASSTSSDSDALPLL 294
Query: 351 VEASGSQSTEHAGWVHDYSGELGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQN 410
VEA+ + + G YSGELGIF++ ++SDL SEGRSG + + GRH++
Sbjct: 295 VEAAAT-GARNGGIGGSYSGELGIFSNQ--TSEMESDLLSEGRSGHKSRGSQHGRGRHRS 351
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
LTQK+ P+TF+D+VGQ+LV QALSNAV+RRK+GL+YVFYGPHGTGKTSCAR+FA+ALNC
Sbjct: 352 LTQKFAPKTFKDVVGQSLVVQALSNAVLRRKIGLVYVFYGPHGTGKTSCARVFAKALNCH 411
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
S E P+PC C SCI+H+ GKSR++ E+GPVGN D + I+D+LDN++ S PS YR+F+F
Sbjct: 412 SPEHPRPCDSCTSCIAHNLGKSRSVMEIGPVGNIDMDGIVDVLDNVMLSPAPSHYRVFIF 471
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
DDCDTL D+WS ISKVVDRAPRRVVFILVS +LD LPHII+SRCQKFFFPK+K+ DI+
Sbjct: 472 DDCDTLPADTWSLISKVVDRAPRRVVFILVSPNLD-LPHIILSRCQKFFFPKLKECDIVN 530
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLIS 649
TLQWI++ E +++D+DALKLIASRSDGSLRDAEMTL+QLSLLGQRIS+ LVQELV +S
Sbjct: 531 TLQWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISLSLVQELVRYLS 589
>gi|302805609|ref|XP_002984555.1| hypothetical protein SELMODRAFT_423688 [Selaginella moellendorffii]
gi|300147537|gb|EFJ14200.1| hypothetical protein SELMODRAFT_423688 [Selaginella moellendorffii]
Length = 1241
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 310/771 (40%), Positives = 449/771 (58%), Gaps = 73/771 (9%)
Query: 226 RARTASAL---RDVGGQSEMSVASNSLA--QGLACP-----KYHMEEEDEEYGERNVTRA 275
R+R+ S L RD+ +S V S +A + + P YH +E+ E ++
Sbjct: 282 RSRSHSPLLSSRDISNKSRSPVVSREIANTRAFSFPDPGQQHYHYTGTNED--ELECSQE 339
Query: 276 PRNGCGIPWNWSRIHH--RGKTFLDMAGRSLTSCGLSDSRIRKAGGASHSRN-------V 326
P++GCGIPWNWSR+ +GK FLD G+ L L+ RKAG + SR+ +
Sbjct: 340 PKHGCGIPWNWSRLGQKPKGKGFLDSTGKMLRPEVLAR---RKAGEHTLSRSQSESGREL 396
Query: 327 PDMPLVSD--RSSSSTNSGAEALPLLVEASGSQSTEHAGW--------VHDYSGEL---G 373
D SS+ NS AEALPLL E S S + A V GEL G
Sbjct: 397 ATAMFQQDCLSYSSAGNSDAEALPLLTEPEASVSGDVAASSVEVDSDNVVAARGELNPRG 456
Query: 374 IFA----DHLLKHAVDSDL------ASEGR--SGGQQNLGDNRNGRHQNLTQKYMPRTFR 421
I A + A+ + L SE R GG + N+ +L+ KY P+TFR
Sbjct: 457 ILAPKGRSQVTTEALQARLRERLAWISERRVVEGGGSDFRQNK-----SLSYKYRPKTFR 511
Query: 422 DLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFC 481
D+VGQN+V Q+L+NAV+R ++ LY+F GP GTGK+S AR+FA ALNC S E+ +PCG C
Sbjct: 512 DMVGQNVVMQSLANAVLRGRIVSLYLFQGPRGTGKSSAARVFAAALNCLSSEELRPCGLC 571
Query: 482 NSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVFDDCDTLSPD 539
C++ + GKS +++E S+ +LL+ V PPS +YR+ V D+ TL+ +
Sbjct: 572 RECVALNLGKSLDVREFDASRFNGLGSVKELLE--VAILPPSSGRYRLSVVDEVHTLTAE 629
Query: 540 SWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKE 599
SW+ K ++ P + IL++S+ + LP + SRCQK+ F K+KD DII LQ +A+KE
Sbjct: 630 SWNFFLKGMEELPGNSIVILITSNPEQLPRTLGSRCQKYPFTKLKDPDIISRLQKLATKE 689
Query: 600 GIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDL 659
I+I+ +AL+LIASRS+GSLRDAEMTL+QL LLGQ +++ +QELVGL+ D+KL+DLLD
Sbjct: 690 NIDIEIEALELIASRSNGSLRDAEMTLDQLGLLGQVVTLSTLQELVGLLPDDKLMDLLDF 749
Query: 660 ALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLS 719
ALS DTV+TVK++R ++E+GVEPLALMSQLAT+ITD+LAGSY + +R+FF + LS
Sbjct: 750 ALSGDTVSTVKSVRNLLESGVEPLALMSQLATLITDMLAGSYKPVLTQRKRRFFHKITLS 809
Query: 720 KEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPL 779
KE++E+LRQALK LSEAEKQ+R S+D+ TWLTAA+LQ APD+ Y+ P+SS+ +S + S +
Sbjct: 810 KEDLERLRQALKILSEAEKQVRASSDQTTWLTAAILQFAPDRAYIFPASSSGSSATQSLV 869
Query: 780 DLENAGGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRH 839
+ + E+ I + + E+ H EN D + + K
Sbjct: 870 GNDTS----------EKETIESDSGALKQGWEPEHEHFENPVDDTAVFAKPEVPWANKSL 919
Query: 840 TGSGMALQQKSPLSAG---GRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISV 896
+ A +A G + ++++W + L ++ K L R GKLIS+
Sbjct: 920 STVPEARIHPYVQTASTNDGHDTCAFDQKRLDDVWQKALKNSRSKSLKHLL-RHGKLISL 978
Query: 897 SFG-AAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKI 946
S TV++ F+ K+KAEK + +I AF+S LG P+ ++I+ SK+
Sbjct: 979 SMQEVQATVEIEFQHSKQKAKAEKSRSRISHAFQSSLGCPVEVQIKLASKL 1029
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 15/63 (23%)
Query: 21 LRNHIHLTNCIHLKN--HMHKHSPILADR-------------SIMRDLMVLQRSRSLRDP 65
L H+HLTNCIHL+N H+ +H + R +MR+L L R+RSLRDP
Sbjct: 44 LDKHVHLTNCIHLRNRFHVQRHKMTVEARHHLSAGGVAAAGLPLMRELTALSRTRSLRDP 103
Query: 66 SAS 68
S S
Sbjct: 104 STS 106
>gi|302797513|ref|XP_002980517.1| hypothetical protein SELMODRAFT_420117 [Selaginella moellendorffii]
gi|300151523|gb|EFJ18168.1| hypothetical protein SELMODRAFT_420117 [Selaginella moellendorffii]
Length = 1291
Score = 468 bits (1203), Expect = e-128, Method: Compositional matrix adjust.
Identities = 310/771 (40%), Positives = 449/771 (58%), Gaps = 73/771 (9%)
Query: 226 RARTASAL---RDVGGQSEMSVASNSLA--QGLACP-----KYHMEEEDEEYGERNVTRA 275
R+R+ S L RD+ +S V S +A + + P YH +E+ E ++
Sbjct: 282 RSRSHSPLLSSRDISNKSRSPVVSREIANTRAFSFPDPGQQHYHYTGTNED--ELECSQE 339
Query: 276 PRNGCGIPWNWSRIHH--RGKTFLDMAGRSLTSCGLSDSRIRKAGGASHSRN-------V 326
P++GCGIPWNWSR+ +GK FLD G+ L L+ RKAG + SR+ +
Sbjct: 340 PKHGCGIPWNWSRLGQKPKGKGFLDSTGKMLRPEVLAR---RKAGEHTLSRSQSESGREL 396
Query: 327 PDMPLVSD--RSSSSTNSGAEALPLLVEASGSQSTEHAGW--------VHDYSGEL---G 373
D SS+ NS AEALPLL E S S + A V GEL G
Sbjct: 397 ATAMFQQDCLSYSSAGNSDAEALPLLTEPEASVSGDVAASSVEVDSDNVVAARGELNPRG 456
Query: 374 IFA----DHLLKHAVDSDL------ASEGR--SGGQQNLGDNRNGRHQNLTQKYMPRTFR 421
I A + A+ + L SE R GG + N+ +L+ KY P+TFR
Sbjct: 457 ILAPKGRSQVTTEALQARLRERLGWISERRVVEGGGSDFRQNK-----SLSYKYRPKTFR 511
Query: 422 DLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFC 481
D+VGQN+V Q+L+NAV+R ++ LY+F GP GTGK+S AR+FA ALNC S E+ +PCG C
Sbjct: 512 DMVGQNVVMQSLANAVLRGRIVSLYLFQGPRGTGKSSAARVFAAALNCLSSEELRPCGLC 571
Query: 482 NSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVFDDCDTLSPD 539
C++ + GKS +++E S+ +LL+ V PPS +YR+ V D+ TL+ +
Sbjct: 572 RECVALNLGKSLDVREFDASRFNGLGSVKELLE--VAILPPSSGRYRLSVVDEVHTLTAE 629
Query: 540 SWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKE 599
SW+ K ++ P + IL++S+ + LP + SRCQK+ F K+KD DII LQ +A+KE
Sbjct: 630 SWNFFLKGMEELPGNSIVILITSNPEQLPRTLGSRCQKYPFTKLKDPDIISRLQKLATKE 689
Query: 600 GIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDL 659
I+I+ +AL+LIASRS+GSLRDAEMTL+QL LLGQ +++ +QELVGL+ D+KL+DLLD
Sbjct: 690 NIDIEIEALELIASRSNGSLRDAEMTLDQLGLLGQVVTLSTLQELVGLLPDDKLMDLLDF 749
Query: 660 ALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLS 719
ALS DTV+TVK++R ++E+GVEPLALMSQLAT+ITD+LAGSY + +R+FF + LS
Sbjct: 750 ALSGDTVSTVKSVRNLLESGVEPLALMSQLATLITDMLAGSYKPVLTQRKRRFFHKIALS 809
Query: 720 KEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPL 779
KE++E+LRQALK LSEAEKQ+R S+D+ TWLTAA+LQ APD+ Y+ P+SS+ +S + S +
Sbjct: 810 KEDLERLRQALKILSEAEKQVRASSDQTTWLTAAILQFAPDRAYIFPASSSGSSATQSLV 869
Query: 780 DLENAGGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRH 839
+ + E+ I + + E+ H EN D + + K
Sbjct: 870 GNDTS----------EKETIESDSGALKQGWEPEHEHFENPVDDTAVFAKPEVPWANKSL 919
Query: 840 TGSGMALQQKSPLSAG---GRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISV 896
+ A +A G + ++++W + L ++ K L R GKLIS+
Sbjct: 920 STVPEARIHPYVQTASTNDGHDTCAFDQKRLDDVWQKALKNSRSKSLKHLL-RHGKLISL 978
Query: 897 SFG-AAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKI 946
S TV++ F+ K+KAEK + +I AF+S LG P+ ++I+ SK+
Sbjct: 979 SMQEVQATVEIEFQHSKQKAKAEKSRSRISHAFQSSLGCPVEVQIKLASKL 1029
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 15/82 (18%)
Query: 2 TRAVRGRILKDANGDISDHLRNHIHLTNCIHLKN--HMHKHSPILADR------------ 47
+RA G + S HL H+HLTNCIHL+N H+ +H + R
Sbjct: 25 SRAAAGTGSSHGSESRSSHLDKHVHLTNCIHLRNRFHVQRHKMTVEARHHLSAGGVAAAG 84
Query: 48 -SIMRDLMVLQRSRSLRDPSAS 68
+MR+L L R+RSLRDPS S
Sbjct: 85 LPLMRELTALSRTRSLRDPSTS 106
>gi|413946123|gb|AFW78772.1| hypothetical protein ZEAMMB73_060572 [Zea mays]
Length = 555
Score = 464 bits (1194), Expect = e-127, Method: Compositional matrix adjust.
Identities = 235/389 (60%), Positives = 300/389 (77%), Gaps = 24/389 (6%)
Query: 269 ERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDSRIRKA----------- 317
++ V+ N CGIPWNWSRIHHRGK+ LDMAGRSL SCGLSD + A
Sbjct: 175 QQQVSHESHNVCGIPWNWSRIHHRGKSILDMAGRSL-SCGLSDPKSTSAARRSEPATSAA 233
Query: 318 --GGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAGWVHDYSGELGIF 375
G + SR+ P P V+ R +SS++S +++LPLLV+ + G +SGELGIF
Sbjct: 234 SCGHVNGSRSHPHFP-VTARLTSSSSSDSDSLPLLVDGVRNAV---GGISSSFSGELGIF 289
Query: 376 ADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSN 435
+ +DSDLASE RSG Q++ G +R RH++ TQKY PRTF+D+VGQ+LV QALSN
Sbjct: 290 SK---SSELDSDLASEARSG-QKSRGSHR-ARHRSFTQKYAPRTFKDVVGQSLVVQALSN 344
Query: 436 AVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNI 495
A++++K+GL+YVFYGPHGTGKTSCAR+FA+ALNC S E P+PC C SCI+H+ GKSR++
Sbjct: 345 AILKKKIGLVYVFYGPHGTGKTSCARVFAKALNCHSPEHPRPCDSCASCIAHNLGKSRSL 404
Query: 496 KEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRV 555
E+GPVGN D + I+D+LDN++ S SQ+R+F+ DDC+TL PD+WS ISKVV+RAPRRV
Sbjct: 405 LEIGPVGNIDLDGIVDILDNVMLSPVKSQHRVFIIDDCNTLPPDTWSVISKVVERAPRRV 464
Query: 556 VFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRS 615
VFIL+S +LD LPHII+SRCQKFFFPK+K+ DII TLQWI++ EG+++D+DALKLIASRS
Sbjct: 465 VFILISPNLD-LPHIIVSRCQKFFFPKLKECDIISTLQWISTSEGLDVDRDALKLIASRS 523
Query: 616 DGSLRDAEMTLEQLSLLGQRISVPLVQEL 644
DGSLRDAEMTL+QLSLLGQ IS+ LVQEL
Sbjct: 524 DGSLRDAEMTLDQLSLLGQTISMSLVQEL 552
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 38/62 (61%), Gaps = 14/62 (22%)
Query: 19 DHLRNHIHLTNCIHLKNHM----------HKHSPI----LADRSIMRDLMVLQRSRSLRD 64
DHLR H HLTNCIHL++H + SP A ++MRDL+ LQRSRSLRD
Sbjct: 12 DHLRGHAHLTNCIHLRHHHAHAHAHGASGRRRSPTGSSASASAALMRDLLALQRSRSLRD 71
Query: 65 PS 66
PS
Sbjct: 72 PS 73
>gi|168028953|ref|XP_001766991.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681733|gb|EDQ68157.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1473
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 311/973 (31%), Positives = 495/973 (50%), Gaps = 148/973 (15%)
Query: 234 RDVGGQSEMSVASNSLAQGLACPKYHMEEEDEE------YGERNVTRAPRNGCGIPWNWS 287
+DV G S + V +S +G + M+ E E +V+ P+NGCG+PW W+
Sbjct: 512 KDVNGNSSLRVGLHS--RGRMPARRSMQSYKEAPVVPTMSDELDVSEIPQNGCGMPWYWT 569
Query: 288 --RIHHRGKTFLDMAGRSLTSCGLSDSRIRKAGGASHSRNVPDMPLVSDRSSSSTNSGAE 345
++GK+ LD AG LT C ++ +K G D VS SS +
Sbjct: 570 SGSNKYKGKSLLDYAGIGLT-CAFPETAKKKLG---------DSKQVSRASSRHGSQRDL 619
Query: 346 ALPLLVEASGSQSTEHAGWVHDYSGELGIFADHLLKHAV---------DSDLASEGRSGG 396
+P+ E+ G GEL D + +H V + + R G
Sbjct: 620 QVPI--------DPENHGIPLLNGGELS--TDEIDEHDVVRYEHRDVPARETPASVRLSG 669
Query: 397 QQNLGDN---RNGR----HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFY 449
++ LG N + H++++QKY P++F+D+VGQ LV ++L+ A+ + KV +Y+F
Sbjct: 670 EKCLGQGAEVSNSKTAFTHRSMSQKYRPKSFKDMVGQTLVVKSLTTAITKGKVAPVYLFA 729
Query: 450 GPHGTGKTSCARIFARALNCQSLE-QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFES 508
GP G+GKT+CAR+FA AL C + E +PCG C C + +SR++KE+ D +
Sbjct: 730 GPRGSGKTTCARVFAAALVCLNTEPHRRPCGLCRECATMTLNRSRDVKEIDVSTCPDLDH 789
Query: 509 ILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALP 568
+ LL N+ +S + ++F+ + CD L+ + W+A K +D PR VVFIL++++L+ LP
Sbjct: 790 -MRLLLNLPSSN--GRQQVFILEGCDFLNTELWTAFLKFLDDPPRNVVFILITTNLERLP 846
Query: 569 HIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ 628
SRCQK+ F K+K+++I+ LQ +A KE ++ID+ AL LIASR++GSLRDAEM L+Q
Sbjct: 847 LSATSRCQKYHFGKLKESEIMTRLQGLAEKEHLDIDEAALFLIASRAEGSLRDAEMMLDQ 906
Query: 629 LSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQ 688
LSLL Q I++ +VQEL GLI +EKL++LLD+AL+ADTVNTVK +R +++ GV+ L+L++Q
Sbjct: 907 LSLLDQTITLAMVQELSGLIPEEKLINLLDMALAADTVNTVKGMRELLDAGVDALSLVAQ 966
Query: 689 LATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLT 748
LA++I +ILAG+ D ++ ++ FF R +EE ++LRQALK L+E EKQLR SND+ T
Sbjct: 967 LASLIANILAGAIDLRRETRKKGFFYRNMPRREEQQRLRQALKVLAECEKQLRASNDRPT 1026
Query: 749 WLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLEN-------------------AGGRGM 789
WLTAALLQ APD+ Y LP SS DTS + SP+ + A
Sbjct: 1027 WLTAALLQFAPDRSY-LP-SSVDTSMAPSPIAFDTFERVPPGEPCTPRLPPPQPASESRS 1084
Query: 790 TRKGGE---------------------RAEISNKETGVP--------MNVRLENFHAENS 820
+RK + +A +S TG P + ++ + E++
Sbjct: 1085 SRKHSQQVPNDVSSALSQPVHGHRDKDKAPVSASPTGKPKGPPTGNQLQSKVHHAATESA 1144
Query: 821 GDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQN 880
D D D + S + L S + G R +R +E+IW +VL+ ++
Sbjct: 1145 MDQAD---------DTSLRSASSLVLFDPS-QAVGSRDFRMLTRRDMEDIWGKVLDGCRS 1194
Query: 881 NGTKEFLYREGKLISVSFGAAPT---VQLTFRSHLTKSKAEKFKDQILQAFESVLGSP-- 935
N ++ L +G L+++S T + FRS K++AE+ + AF+ LG P
Sbjct: 1195 NVLRQLLSSQGTLMALSVARDETFAVAHVEFRSPGHKARAERLRSSTCHAFQMALGCPVE 1254
Query: 936 LTIEIRC-------ESKIDTQAGFHLPLMLPASKDGSSQ-MVIDSESIIGNRGPMAGPIE 987
L + + C E K A P G ++ V E++ P
Sbjct: 1255 LKLSLECPPSVVLEEIKASHIAAQSEPSTSEVKHSGRAKDHVFIVENVSSVESPPLTQSR 1314
Query: 988 ISKRIP--RDEGINGASSQAQQLHSESLEMGRTEIVEVPASPRETKDHAENRADYSKRAS 1045
+R P R E + G ++++++L +G + + + AS
Sbjct: 1315 QRRRKPKSRQELLTGLAARSRRLGDTGAGLG-------------SDSRGSIKYCFPIEAS 1361
Query: 1046 LSERKKLGEQSQCQSIVRSKVSLAHVIQQAEGCTQRNGWSKRKAVSIAEKLEQENLRLEP 1105
S R +LG + + + S I +G + + K K ++ LE++N +L+P
Sbjct: 1362 TSCRHRLGRRPS----LNRETSGRRDILDGQGVKVKWKYPKFKGIA---NLERKNRKLDP 1414
Query: 1106 ---RSRSLLCWKA 1115
R+R+ LCW++
Sbjct: 1415 RRKRARAALCWQS 1427
Score = 44.7 bits (104), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 8/54 (14%)
Query: 20 HLRNHIHLTNCIHLKNHMH---KHSPILADR-----SIMRDLMVLQRSRSLRDP 65
HL+ H+HLTN IH+KNH+H H+ +L R + R+L +++ +SL+DP
Sbjct: 217 HLKRHLHLTNNIHVKNHIHMQKNHNRMLDPRRTPQLPLRRELTAVKKVKSLQDP 270
>gi|359486198|ref|XP_002268959.2| PREDICTED: uncharacterized protein LOC100242129 [Vitis vinifera]
Length = 1274
Score = 361 bits (927), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 246/696 (35%), Positives = 375/696 (53%), Gaps = 41/696 (5%)
Query: 277 RNGCGIPWNWSR---IHHRGKTFLDMAGRSLTSCGLSDSRIRKA-----GGASHSRNVPD 328
R GCGIP WSR HRG S S LSD+ RK G +
Sbjct: 298 RQGCGIPCYWSRRSTPRHRGIC----GSGSCDSPSLSDTIRRKGSSMLCGSQTIYPRRHG 353
Query: 329 MPLVSDRSSSSTNSGAEALPLLV---EASGSQSTEHAGWVHDYSGELGIFADHLLKHAVD 385
+PL S + S + + LPLL + G S + S G L
Sbjct: 354 LPLGSKKRRSVSMTPQGLLPLLTNSCDGHGGSSMGTGRSDDELSTNFGELDLEALSRLDG 413
Query: 386 SDLASEGRS----------GGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSN 435
+S RS G ++ G N R +L+QKY P F +L+GQN+V Q+L N
Sbjct: 414 RRWSSSCRSQEAMELVALNGEREEEGSPENVR--SLSQKYRPMFFDELIGQNIVVQSLVN 471
Query: 436 AVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNI 495
A+ R ++ +Y+F GP GTGKTS ARIF ALNC ++ + KPCG C C GKSR+
Sbjct: 472 AISRGRIAPVYLFQGPRGTGKTSTARIFTAALNCLAVGETKPCGICRECSDFISGKSRHF 531
Query: 496 KEVGPVGNFDFESILDLLDNMV--TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPR 553
+E+ + + LL M T P S Y++FV D+C L +W A K ++ P
Sbjct: 532 REIDGTNKKGMDRMRYLLKTMPFGTPSPLSPYKVFVIDECHLLPSKTWLAFLKFLEEPPP 591
Query: 554 RVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIAS 613
+VVFI ++ L+ +P ++SRCQK+ F K+K+ DI+ L+ I+ E ++++ DAL+LIA
Sbjct: 592 QVVFIFITPDLENVPRTVLSRCQKYLFNKIKEGDIVARLRKISDDENLDVESDALELIAL 651
Query: 614 RSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLR 673
+DGSLRDAE L+QLSLLG+RI+ LV +LVG++SDEKL++LL+LA+S+DT TVK R
Sbjct: 652 NADGSLRDAETMLDQLSLLGKRITTSLVNDLVGVVSDEKLLELLELAMSSDTAETVKRAR 711
Query: 674 VIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTL 733
+M++GV+P+ LMSQLA++I DI+AG+Y + FF + L++ EM++L+ ALK L
Sbjct: 712 ELMDSGVDPIVLMSQLASLIMDIIAGTYHIVDAQQSDSFFGGRSLTEAEMDRLKHALKLL 771
Query: 734 SEAEKQLRMSNDKLTWLTAALLQL-APDQQYVLPSSSADTSFSHSPLDLENAGGRGMT-- 790
SEAEKQLR+S+++ TW TA LLQL +P L SS S S + D ++ R T
Sbjct: 772 SEAEKQLRVSSERSTWFTATLLQLGSPSPDPTLSGSSRRQS-SKTTEDDPSSASRDATIV 830
Query: 791 RKGGERAEISNKETGVPMNV-RLENFHAENSGDFIDGNMRKGISLDRK----RHTGSGMA 845
K A +++ P+++ + ++ + GD + ++ G + + K + SG +
Sbjct: 831 HKQKPNAHHMPRKSFSPISMPKSAEKNSTHQGDLL--SLVDGFNFNAKPVHSQFRNSGAS 888
Query: 846 LQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTV- 904
+ G + + +++IW + R + ++ L+ GKL+S+S V
Sbjct: 889 ASSHDDVMMGNLVFRSINADKLDDIWERCIERCHSKTLRQLLHAHGKLVSISEAEGGLVA 948
Query: 905 QLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEI 940
+ F+ K +AE+F I + E V+ S + ++I
Sbjct: 949 YVAFQDEDIKCRAERFLSSITNSIEIVMRSNVEVKI 984
>gi|224129822|ref|XP_002328811.1| predicted protein [Populus trichocarpa]
gi|222839109|gb|EEE77460.1| predicted protein [Populus trichocarpa]
Length = 1197
Score = 361 bits (926), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 246/698 (35%), Positives = 371/698 (53%), Gaps = 55/698 (7%)
Query: 277 RNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDSRIRKAGGASHSRNVPDMPL----- 331
R GCGIP WS+ R + + G S S LSD+ +R+ G + + P
Sbjct: 331 RQGCGIPCYWSK---RTPRYRGVCGSSCCSPSLSDT-LRRKGSSMFCGSQPLYHRRRRSW 386
Query: 332 -VSDRSSSSTNSGAEALPLLVEASGSQSTEHAGW------VHDYSGELGIFA-------- 376
+S++ + +G LPLL + G + GEL + A
Sbjct: 387 SISNKRRIGSRTGHALLPLLTNSGDGIGGSSIGTGLSDDELSTNYGELDLEALSRLDGRR 446
Query: 377 -------DHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLV 429
D L A++ D EG +N+G +L+QKY P F +L+GQN+V
Sbjct: 447 WSSCRSQDGLEIVALNGDGEEEGTP---ENIG--------SLSQKYKPVFFSELIGQNIV 495
Query: 430 AQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR 489
Q+L+NA+ R ++ +Y+F GP G GKTS ARIFA ALNC S E+ KPCG+C C
Sbjct: 496 VQSLTNAISRGRIAPVYLFQGPRGIGKTSAARIFASALNCTSAEEIKPCGYCRECSDSIS 555
Query: 490 GKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP---SQYRIFVFDDCDTLSPDSWSAISK 546
GK+R++ EV + + LL ++ RPP S Y++F+ D+C L W A K
Sbjct: 556 GKTRDLWEVDGTDKKGIDKVRYLLKK-ISHRPPLGSSHYKVFLIDECHLLPSKMWLAFLK 614
Query: 547 VVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKD 606
++ P+RVVFI V++ D +P + SRCQK+ F K+KD DI+ L+ I+ +E ++++
Sbjct: 615 FLEEPPQRVVFIFVTTDPDNVPRTVQSRCQKYLFNKIKDGDIVARLRKISKEENLDVELG 674
Query: 607 ALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTV 666
AL LI+ +DGSLRDAE L+QLSLLG++I+ LV ELVG++SDEKL++LL+LA+S+DT
Sbjct: 675 ALDLISLNADGSLRDAETMLDQLSLLGKKITTSLVNELVGVVSDEKLLELLELAMSSDTA 734
Query: 667 NTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKL 726
TVK R +M++GV+P+ LMSQLA++I DI+AG+Y+ +H F L++ E+E+L
Sbjct: 735 ETVKRARDLMDSGVDPMVLMSQLASLIMDIIAGTYNVVDAKHGDSLFGTHNLTEAELERL 794
Query: 727 RQALKTLSEAEKQLRMSNDKLTWLTAALLQL--APDQQYVLPSSSADTSFSHSPLDLENA 784
+ AL+ LSEAEKQLR+S+D+ TW TA LLQL P SSS S + D +A
Sbjct: 795 KHALRLLSEAEKQLRISSDRSTWFTATLLQLGSTPSMDLTQSSSSRRQSSRTTEEDPSSA 854
Query: 785 GGRGMTRKGGERAEISNKETGVPMNVRLE-NFHAENSGDFIDGNMRKGISLDRKRHTGSG 843
K A+ + + P ++ E N + G+F G K R R S
Sbjct: 855 SKESKVYKTKSNAQYLTQRSSSPPSLYREINGCSSQQGEF--GFNAKA---PRSRLVNSR 909
Query: 844 MALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVS-FGAAP 902
+ G + +++IW + + + + ++ L+ GKL+S+S A
Sbjct: 910 TSSTSLDDEITGNMIFRYKNSEKLDDIWEKCIEKCHSQTLRQLLHAHGKLLSISEVDGAL 969
Query: 903 TVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEI 940
V + F K++AE+F I + E VL + + I
Sbjct: 970 AVYVAFEDQDIKARAERFLSSITNSIEIVLRRNVEVRI 1007
>gi|224070732|ref|XP_002303217.1| predicted protein [Populus trichocarpa]
gi|222840649|gb|EEE78196.1| predicted protein [Populus trichocarpa]
Length = 1241
Score = 358 bits (920), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 253/717 (35%), Positives = 386/717 (53%), Gaps = 69/717 (9%)
Query: 260 MEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDSRIRKAGG 319
M + D+E G+ ++ R+GCGIP WS+ R + + G S S LSD+ RK G
Sbjct: 308 MNDGDDEDGD-HLDLPGRHGCGIPCYWSK---RTPRYRGVCGSSCCSPSLSDTLRRK--G 361
Query: 320 ASHSRNVPDMPLVSDRSSSSTN-------SGAEALPLLVEASGSQSTEHAGWVH------ 366
+S M RS S +N +G LPLL ++ G H
Sbjct: 362 SSMLCGSQSMYHRRLRSCSLSNKRRIGSRTGQAFLPLLADSGDGIGGSSIGTGHSDDELS 421
Query: 367 -DYSGELGIFA---------------DHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQN 410
+Y GEL + A D L A++ D EG QN+ ++
Sbjct: 422 TNY-GELDLEALCRLDGRRWSSCRNQDGLEIVALNGDGEDEGTV---QNI--------RS 469
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L+QKY P F +L+GQN+V Q+L NA+ R ++ +Y+F GP GTGKTS ARIFA ALNC
Sbjct: 470 LSQKYKPAFFSELIGQNIVVQSLINAISRGRIARVYLFQGPRGTGKTSAARIFASALNCM 529
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP---SQYRI 527
S E+ KPCG C C GK+R++ EV + + LL ++ PP S+Y++
Sbjct: 530 STEEIKPCGCCRECNDSSSGKTRDLWEVDGTDKKGIDKVRYLLKK-ISRGPPLGSSRYKV 588
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
F+ D+C L W A K ++ P+RVVFI V++ D +P + SRCQK+ F K+KD D
Sbjct: 589 FLIDECHLLPSKMWLAFLKFLEEPPQRVVFIFVTTDPDNVPRTVQSRCQKYLFSKIKDRD 648
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGL 647
I+ L+ I+++E ++++ +AL LIA +DGSLRDAE L+QLSLLG++I+ LV ELVG
Sbjct: 649 IVARLRKISNEENLDVELNALDLIALNADGSLRDAETMLDQLSLLGKKITTSLVNELVGD 708
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR 707
+SDEKL++LL+LA+S++T TVK R +M++G++P+ LMSQLA++I DI+AG+Y+ +
Sbjct: 709 VSDEKLLELLELAMSSETAETVKRARDLMDSGIDPMVLMSQLASLIMDIIAGTYNVVYAK 768
Query: 708 HRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL--APDQQYVL 765
H Q L++ E+E+L+ AL+ LSEAEKQLR+S+D+ TW TA LLQL P L
Sbjct: 769 HGDSLIGTQNLTEAELERLKHALRLLSEAEKQLRISSDRSTWFTATLLQLGSTPSMDLTL 828
Query: 766 PSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNV-RLENFHAENSGDFI 824
SSS S + D + K A+ + + P ++ R N H+ + G++
Sbjct: 829 SSSSRRQSSRTTEEDPSSVSKESNVYKPNSDAQYFPRRSSSPSSLYRAINGHSSHQGEY- 887
Query: 825 DGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTK 884
+ N + +D + K+ + +++IW + + + + +
Sbjct: 888 EFNAKPPRLMDSNDEMTGNKVFRYKNS-------------DKLDDIWEKCIEKCHSQTLR 934
Query: 885 EFLYREGKLISVS-FGAAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEI 940
+ L+ GKL+S+S A V + F K++AE+F I + E VL + + I
Sbjct: 935 QLLHAHGKLLSISEVDGALAVYVAFEDEDIKARAERFLSSITNSIEIVLRCNVEVRI 991
>gi|218185516|gb|EEC67943.1| hypothetical protein OsI_35669 [Oryza sativa Indica Group]
Length = 860
Score = 358 bits (919), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 207/553 (37%), Positives = 318/553 (57%), Gaps = 11/553 (1%)
Query: 394 SGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHG 453
SG + D R+ L+QKY PR+F +LVGQ+ V Q+L+NA++R ++ Y+F+GP G
Sbjct: 78 SGADHAVSDQRS-----LSQKYRPRSFNELVGQSFVVQSLNNAIIRERIAPAYLFHGPRG 132
Query: 454 TGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLL 513
TGKTS ARIF+ AL+C ++ + KPCG C C G N+ EV I L+
Sbjct: 133 TGKTSAARIFSAALSCVAIGENKPCGACMECTDFFTGNGINLIEVDASNRKSINRIRHLI 192
Query: 514 DNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIIS 573
+N+ S S+Y++FV D+C +S WSA K +D RVVFI ++ + LP +IS
Sbjct: 193 ENIPASATSSRYKVFVVDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENLPRAVIS 252
Query: 574 RCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG 633
RCQK+ F K+KD DI+ L+ IA KE ++++ AL LIA SDGSLRDAE L+QLSLLG
Sbjct: 253 RCQKYMFSKIKDIDIVCRLRKIAVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLG 312
Query: 634 QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVI 693
++I+ LV +LVG++S+EKL+DLL++A+SADT TVK R +M++GV+P+ALMSQLA +I
Sbjct: 313 KKITPSLVNDLVGVVSEEKLLDLLEIAMSADTAETVKRSRELMDSGVDPMALMSQLAGLI 372
Query: 694 TDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAA 753
DI+AG+Y + + ++ E+E+L+QALK LS+AEKQ+R+S+++ TW TAA
Sbjct: 373 MDIIAGTYRLADPTCGGEGIGGRNITDAELERLQQALKILSDAEKQIRLSSERSTWFTAA 432
Query: 754 LLQLAP--DQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVR 811
LLQL + + + SS+ S + + +A + + + + +++R
Sbjct: 433 LLQLGSGHNSEMIQSRSSSKQSAKATSEIVMDAVRESSASRTTAHPLFTLRGSRKTLDLR 492
Query: 812 LENFHAENSGDF-IDGNMRKGISLDRKRHTGSGMALQQKSPLSAGG--RHVSGNSRNGIE 868
+ H+ G + MR +L LQ + S R ++ S + +
Sbjct: 493 TASGHSSPQGVVSVSSRMRANDNLKHGECRSVDRVLQDSAQRSNSSELRPMTNVSSDNLA 552
Query: 869 EIWLEVLNRIQNNGTKEFLYREGKLISV-SFGAAPTVQLTFRSHLTKSKAEKFKDQILQA 927
IW + ++ + K+ L GKL SV +G + F KS+A++F I +
Sbjct: 553 RIWRKCIDNCHSKTLKQLLCDHGKLASVKDYGGYYIAFIAFEGSDIKSRAQRFTSSIRNS 612
Query: 928 FESVLGSPLTIEI 940
E+VL + + I
Sbjct: 613 METVLRCNVEVRI 625
>gi|222615775|gb|EEE51907.1| hypothetical protein OsJ_33507 [Oryza sativa Japonica Group]
Length = 905
Score = 357 bits (916), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 207/553 (37%), Positives = 318/553 (57%), Gaps = 11/553 (1%)
Query: 394 SGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHG 453
SG + D R+ L+QKY PR+F +LVGQ+ V Q+L+NA++R ++ Y+F+GP G
Sbjct: 78 SGADHAVSDQRS-----LSQKYRPRSFNELVGQSFVVQSLNNAIIRERIAPAYLFHGPRG 132
Query: 454 TGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLL 513
TGKTS ARIF+ AL+C ++ + KPCG C C G N+ EV I L+
Sbjct: 133 TGKTSAARIFSAALSCVAIGENKPCGACMECTDFFTGNGINLIEVDASNRKSINRIRHLI 192
Query: 514 DNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIIS 573
+N+ S S+Y++FV D+C +S WSA K +D RVVFI ++ + LP +IS
Sbjct: 193 ENIPASATSSRYKVFVVDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENLPRAVIS 252
Query: 574 RCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG 633
RCQK+ F K+KD DI+ L+ IA KE ++++ AL LIA SDGSLRDAE L+QLSLLG
Sbjct: 253 RCQKYMFSKIKDIDIVCRLRKIAVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLG 312
Query: 634 QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVI 693
++I+ LV +LVG++S+EKL+DLL++A+SADT TVK R +M++GV+P+ALMSQLA +I
Sbjct: 313 KKITPSLVNDLVGVVSEEKLLDLLEIAMSADTAETVKRSRELMDSGVDPMALMSQLAGLI 372
Query: 694 TDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAA 753
DI+AG+Y + + ++ E+E+L+QALK LS+AEKQ+R+S+++ TW TAA
Sbjct: 373 MDIIAGTYRLADPTCGGEGIGGRNITDAELERLQQALKILSDAEKQIRLSSERSTWFTAA 432
Query: 754 LLQLAP--DQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVR 811
LLQL + + + SS+ S + + +A + + + + +++R
Sbjct: 433 LLQLGSGHNSEMIQSRSSSKQSAKATSEIVMDAVRESSASRTTAHPLFTLRGSRKTLDLR 492
Query: 812 LENFHAENSGDF-IDGNMRKGISLDRKRHTGSGMALQQKSPLSAGG--RHVSGNSRNGIE 868
+ H+ G + MR +L LQ + S R ++ S + +
Sbjct: 493 TASGHSSPQGVVSVSSRMRANDNLKHGECRSVDRVLQDSAQRSNSSELRPMTNVSSDNLA 552
Query: 869 EIWLEVLNRIQNNGTKEFLYREGKLISV-SFGAAPTVQLTFRSHLTKSKAEKFKDQILQA 927
IW + ++ + K+ L GKL SV +G + F KS+A++F I +
Sbjct: 553 RIWRKCIDNCHSKTLKQLLCDHGKLASVKDYGGYYIAFIAFEGSDIKSRAQRFTSSIRNS 612
Query: 928 FESVLGSPLTIEI 940
E+VL + + I
Sbjct: 613 METVLRCNVEVRI 625
>gi|125536334|gb|EAY82822.1| hypothetical protein OsI_38032 [Oryza sativa Indica Group]
Length = 950
Score = 356 bits (913), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 214/559 (38%), Positives = 313/559 (55%), Gaps = 63/559 (11%)
Query: 388 LASEGRSGG-QQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLY 446
L+ EG Q+N+ R L+QK+ PR+F +L+G N+VAQ+L + + KV +Y
Sbjct: 257 LSPEGTDAAFQENVPYTETPR--CLSQKFRPRSFSELIGLNVVAQSLLYSSCKGKVAPMY 314
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF 506
+F+GP GTGKTS ARIFA ALNC SLE+ +PCGFC C+ G+SR++KE+
Sbjct: 315 LFHGPRGTGKTSTARIFAAALNCLSLEEQRPCGFCKECVILFSGRSRDVKELDAAKMDRL 374
Query: 507 ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566
+ LL + S++++F+ D+C L D+WSAI K +D R V+I+++S +D+
Sbjct: 375 GRVKALLKSASLVPYSSRFKVFIVDECHLLPEDAWSAILKSLDEPYRHAVYIMITSDIDS 434
Query: 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626
LP I+ CQKF FPK+K ADI+Y L+ I +EG+E D D L I+++S+GSLRDAE+ L
Sbjct: 435 LPRTSITHCQKFHFPKIKVADIVYRLERICIEEGLEFDHDGLYFISAKSNGSLRDAEIML 494
Query: 627 EQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALM 686
+QLSLLG++I++ LV ELVG +SD++L++LLDLALS+DT NTV+ R +M + ++PL L+
Sbjct: 495 DQLSLLGKKITISLVHELVGSVSDDELIELLDLALSSDTTNTVRRARELMASAIDPLQLV 554
Query: 687 SQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDK 746
SQLA +I DIL+G + F R L++ ++KLR ALK LSE EKQLR S ++
Sbjct: 555 SQLANLIMDILSGRCQSAVTEVSKSFLGRYALAEVGIKKLRHALKILSETEKQLRTSRNQ 614
Query: 747 LTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGV 806
TW+T ALLQ ++ ++ S+ D+ G T + S+
Sbjct: 615 ATWVTVALLQFGTNESNLIAESN----------DMHAHSAMGYTDDWVSKVNSSS----- 659
Query: 807 PMNVRLENF-HAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRN 865
NF HA NS KS S RH R
Sbjct: 660 -------NFCHACNSN---------------------------KSNCSE--RHC---RRL 680
Query: 866 GIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFG---AAPTVQLTFRSHLTKSKAEKFKD 922
+E IW + + Q+ K FL +EG L SV A V + H+ S+AEK +
Sbjct: 681 KLENIWRRAIGKCQSRSAKNFLRKEGFLSSVHVTEELAIAEVGFSHPDHI--SRAEKMQS 738
Query: 923 QILQAFESVLGSPLTIEIR 941
I A ++VLG + ++ +
Sbjct: 739 LIESALQNVLGCNVEVKFK 757
>gi|255556667|ref|XP_002519367.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223541434|gb|EEF42984.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 1270
Score = 355 bits (912), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 253/699 (36%), Positives = 377/699 (53%), Gaps = 59/699 (8%)
Query: 277 RNGCGIPWNWSR--IHHRG-------KTFLDMAGRSLTS--CGLSDSRIRKAGGASHSRN 325
R GCGIP WS+ HRG + D R TS CG R+ HS +
Sbjct: 311 RQGCGIPCYWSKRTPRHRGVCGSCCSPSLSDTIQRKGTSMLCGRQSMYHRRW----HSSS 366
Query: 326 VPDMPLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAGWVHDYS-----GELGIFADHLL 380
V + +S RS+ LPLL + G + D GEL + A L
Sbjct: 367 VYNKRRISSRSAQGL------LPLLANSDGRGGSSIGTGNSDDELSTNFGELDLEALSRL 420
Query: 381 KHAVDSDLASEGRS-GGQQNLGDNRNGRHQ-------NLTQKYMPRTFRDLVGQNLVAQA 432
D S RS G + + N +G + +L+QKY P F +++GQN+V Q+
Sbjct: 421 ----DGRRWSSCRSQDGLEIVALNGDGEEEGTPENIRSLSQKYKPLFFGEVIGQNIVVQS 476
Query: 433 LSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS 492
L NA+ R ++ +Y+F GP GTGKTS ARIFA ALNC S E+ KPCG+C C GK+
Sbjct: 477 LINAISRGRIAPVYLFQGPRGTGKTSTARIFASALNCISTEETKPCGYCRDCSDFISGKA 536
Query: 493 RNIKEVGPVGNFDFESILDLLDNMVTSRPP---SQYRIFVFDDCDTLSPDSWSAISKVVD 549
R++ EV + + LL V+ PP S+Y++F+ D+C L W A K ++
Sbjct: 537 RDLWEVDGTNKKGIDKVRHLLKK-VSQWPPTGSSRYKVFLIDECHLLPSKMWLAFLKFLE 595
Query: 550 RAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALK 609
P+RVVFI +++ D +P + SRCQK+ F K+KD DI+ L+ ++S+E ++++ DAL
Sbjct: 596 EPPQRVVFIFITTDPDNVPRTVQSRCQKYLFNKIKDGDIVARLRKVSSEENLDVELDALD 655
Query: 610 LIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTV 669
LIA +DGSLRDAE L+QLSLLG+RI+ LV ELVG++ DEKL++LL+L++S+DT TV
Sbjct: 656 LIALNADGSLRDAETMLDQLSLLGKRITTSLVNELVGVVPDEKLLELLELSMSSDTAETV 715
Query: 670 KNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQA 729
K R ++ +GV+PL LMSQLA++I DI+AG+++ ++ F + L++ E+E+L+ A
Sbjct: 716 KRARDLLHSGVDPLVLMSQLASLIMDIIAGTHNVADAKYSISLFGGRSLTEAELERLKHA 775
Query: 730 LKTLSEAEKQLRMSNDKLTWLTAALLQLA--PDQQYVLPSSSADTSFSHSPLDLENAGGR 787
LK LSEAEKQLR+S+D+ TW TA LLQL P SSS S + D +A
Sbjct: 776 LKLLSEAEKQLRVSSDRSTWFTATLLQLGSVPSPDLTQSSSSRRQSSRTTEEDPSSASRE 835
Query: 788 GMTRKGGERAEISNKETGVPMNV-RLENFHAENSGDF-IDGNMRKGISLDRKRHTGS-GM 844
K A+ ++ + P ++ + N + + G+F + +R S+D + S
Sbjct: 836 VTVYKQKSDAQYLSRRSSSPASLYKAINGKSSHRGEFGFNSKLRPSHSIDSCMSSASRDD 895
Query: 845 ALQQKSPLSAGGRHVSGNSRNG--IEEIWLEVLNRIQNNGTKEFLYREGKLISVS-FGAA 901
L + PL RN ++ IW + + +N ++ L+ GKL S+S A
Sbjct: 896 ELVESMPL---------RYRNAEKLDRIWEKCIANCHSNTLRQLLHTHGKLFSLSEVEGA 946
Query: 902 PTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEI 940
V + F K++AE+F I + E VL + + I
Sbjct: 947 LVVYVAFGDEDIKARAERFMSSITNSIEMVLRCNVEVRI 985
>gi|115487814|ref|NP_001066394.1| Os12g0209300 [Oryza sativa Japonica Group]
gi|77553354|gb|ABA96150.1| ATPase, AAA family protein, expressed [Oryza sativa Japonica Group]
gi|113648901|dbj|BAF29413.1| Os12g0209300 [Oryza sativa Japonica Group]
gi|125578827|gb|EAZ19973.1| hypothetical protein OsJ_35564 [Oryza sativa Japonica Group]
Length = 1174
Score = 355 bits (912), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 208/548 (37%), Positives = 316/548 (57%), Gaps = 25/548 (4%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
++L+QKY P+ F ++VGQ++VAQ+LSNA+ R K+ Y+F GP GTGKTS ARIF+ L+
Sbjct: 400 RSLSQKYRPKLFSEIVGQHIVAQSLSNAITREKIAPAYLFQGPRGTGKTSTARIFSMGLS 459
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
C + + KPCG C C G N+ EV I +LL+N+ S S+Y++F
Sbjct: 460 CLAPGENKPCGICKECTDFLSGNGTNLIEVDASNRKSINRIKNLLENIPPSATSSRYKLF 519
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
V D+C +S WSA K +D RVVF+ ++ D LP +ISRCQK+ F K+KD DI
Sbjct: 520 VVDECHMVSSKLWSAFMKFLDEPLPRVVFVFITIDPDNLPRAVISRCQKYVFSKIKDIDI 579
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLI 648
+ L+ I KE ++++ AL LIA SDGSLRDAE L+QLSLLG++I+ LV +LVG++
Sbjct: 580 VCRLRRICVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVV 639
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH 708
S+EKL+DLL++A+S+DT TVK R +M++G++P+ALMSQLA +I DI+AG+Y
Sbjct: 640 SEEKLLDLLEIAMSSDTAETVKRSRELMDSGIDPMALMSQLAGLIMDIIAGTYKLADSTA 699
Query: 709 RRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSS 768
+ L+ E+E+L+QALK LS+AEKQ+R+S+++ TW TAALLQL+ + +
Sbjct: 700 NDMAVGGRSLTDGELERLQQALKILSDAEKQIRLSSERSTWFTAALLQLSCGHSSEMNQA 759
Query: 769 SADTSFSHSPL-DLENAGGRGMTRK----------GGERAEISNKETGVPMNVRLENFHA 817
+ T+ H + D GR + G + + K T + + + H+
Sbjct: 760 RSSTTECHKSMNDAVTEAGRESSSSRAASHSISAFGVSKKLLDPKATSLHSSPQALASHS 819
Query: 818 ENSGDFIDGNMRKG---ISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEV 874
S ++GN G +S DR + Q+S S V+GN + + IW+
Sbjct: 820 SRSR--LNGNFAYGGECMSADRFLQDST-----QRSNYSEQKVLVNGNLES-LAHIWMRC 871
Query: 875 LNRIQNNGTKEFLYREGKLISVSFGAAPTVQ-LTFRSHLTKSKAEKFKDQILQAFESVLG 933
+ + ++ L+ GKL+ V + + F +S+AE+F I + E+VL
Sbjct: 872 IENCHSKTLQQLLFDHGKLVCVRQCEGCVLAFIAFEDSSIRSRAERFLSSITNSIETVL- 930
Query: 934 SPLTIEIR 941
T+E+R
Sbjct: 931 -RCTVEVR 937
>gi|125536092|gb|EAY82580.1| hypothetical protein OsI_37801 [Oryza sativa Indica Group]
Length = 1174
Score = 355 bits (911), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 208/548 (37%), Positives = 316/548 (57%), Gaps = 25/548 (4%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
++L+QKY P+ F ++VGQ++VAQ+LSNA+ R K+ Y+F GP GTGKTS ARIF+ L+
Sbjct: 400 RSLSQKYRPKLFSEIVGQHIVAQSLSNAITREKIAPAYLFQGPRGTGKTSTARIFSMGLS 459
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
C + + KPCG C C G N+ EV I +LL+N+ S S+Y++F
Sbjct: 460 CLAPGENKPCGICKECTDFLSGNGTNLIEVDASNRKSINRIKNLLENIPPSATSSRYKLF 519
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
V D+C +S WSA K +D RVVF+ ++ D LP +ISRCQK+ F K+KD DI
Sbjct: 520 VVDECHMVSSKLWSAFMKFLDEPLPRVVFVFITIDPDNLPRAVISRCQKYVFSKIKDIDI 579
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLI 648
+ L+ I KE ++++ AL LIA SDGSLRDAE L+QLSLLG++I+ LV +LVG++
Sbjct: 580 VCRLRRICVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVV 639
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH 708
S+EKL+DLL++A+S+DT TVK R +M++G++P+ALMSQLA +I DI+AG+Y
Sbjct: 640 SEEKLLDLLEIAMSSDTAETVKRSRELMDSGIDPMALMSQLAGLIMDIIAGTYKLADSTA 699
Query: 709 RRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSS 768
+ L+ E+E+L+QALK LS+AEKQ+R+S+++ TW TAALLQL+ + +
Sbjct: 700 NDMAVGGRSLTGGELERLQQALKILSDAEKQIRLSSERSTWFTAALLQLSCGHSSEMNQA 759
Query: 769 SADTSFSHSPL-DLENAGGRGMTRK----------GGERAEISNKETGVPMNVRLENFHA 817
+ T+ H + D GR + G + + K T + + + H+
Sbjct: 760 RSSTTECHKSMNDAVTEAGRESSSSRAASHSISAFGVSKKLLDPKATSLHSSPQALASHS 819
Query: 818 ENSGDFIDGNMRKG---ISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEV 874
S ++GN G +S DR + Q+S S V+GN + + IW+
Sbjct: 820 SRSR--LNGNFAYGGECMSADRFLQDST-----QRSNYSEQKVLVNGNLES-LAHIWMRC 871
Query: 875 LNRIQNNGTKEFLYREGKLISVSFGAAPTVQ-LTFRSHLTKSKAEKFKDQILQAFESVLG 933
+ + ++ L+ GKL+ V + + F +S+AE+F I + E+VL
Sbjct: 872 IENCHSKTLQQLLFDHGKLVCVRQCEGCVLAFIAFEDRSIRSRAERFLSSITNSIETVL- 930
Query: 934 SPLTIEIR 941
T+E+R
Sbjct: 931 -RCTVEVR 937
>gi|18395372|ref|NP_565285.1| AAA-type ATPase-like protein [Arabidopsis thaliana]
gi|8980710|gb|AAF82285.1|AF264023_1 STICHEL [Arabidopsis thaliana]
gi|20197093|gb|AAC18938.2| similar to prokaryotic DNA polymerase III gamma subunit
[Arabidopsis thaliana]
gi|330250491|gb|AEC05585.1| AAA-type ATPase-like protein [Arabidopsis thaliana]
Length = 1218
Score = 354 bits (909), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 255/710 (35%), Positives = 372/710 (52%), Gaps = 73/710 (10%)
Query: 277 RNGCGIPWNWSR--IHHRG-------KTFLDMAGRSLTS--CGLSDSRIRK-----AGGA 320
R GCGIP W++ + HRG +F D R+ +S CG S S R+ +GG
Sbjct: 304 RQGCGIPCYWTKKAMKHRGGCRSCCSPSFSDTLRRTGSSILCG-SQSVYRRHNRHSSGGY 362
Query: 321 SHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAGWVHDYSGELGIFADHLL 380
S + ++ RS+ LPLL + G G+ D L
Sbjct: 363 SKQK-------IACRSAQG------VLPLLSYGGDGRGGSSLG--------TGLSDDELS 401
Query: 381 KHAVDSDLASEGRSGG---------QQNL------GDNRNGRH----QNLTQKYMPRTFR 421
+ + DL ++ R G Q L G+ G ++ +QKY P F
Sbjct: 402 TNYGELDLEAQSRLDGRRWSTSYRSQDGLEAVALDGEEEEGSTPETIRSFSQKYRPMFFE 461
Query: 422 DLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFC 481
+L+GQ++V Q+L NAV R ++ +Y+F GP GTGKTS ARIF+ ALNC + E+ KPCG+C
Sbjct: 462 ELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVATEEMKPCGYC 521
Query: 482 NSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP--PSQYRIFVFDDCDTLSPD 539
C GKS++ E+ + + LL N+ T P S Y++FV D+C L
Sbjct: 522 KECNDFMSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSMYKVFVIDECHLLPSK 581
Query: 540 SWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKE 599
+W + K ++ ++VVFI +++ L+ +P I SRCQKF F K+KD+DI+ L+ IAS E
Sbjct: 582 TWLSFLKFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFDKLKDSDIVVRLKKIASDE 641
Query: 600 GIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDL 659
+++D AL LIA +DGSLRDAE LEQLSLLG+RI+ LV ELVG++SDEKL++LL+L
Sbjct: 642 NLDVDLHALDLIAMNADGSLRDAETMLEQLSLLGKRITTALVNELVGVVSDEKLLELLEL 701
Query: 660 ALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLS 719
ALS+DT TVK R +++ G +P+ LMSQLA++I DI+AG+Y +++ FF + L+
Sbjct: 702 ALSSDTAETVKRARELLDLGADPIVLMSQLASLIMDIIAGTYKVVDEKYSNAFFDGRNLT 761
Query: 720 KEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA--PDQQYVLPSSSADTSFSHS 777
+ +ME L+ ALK LSEAEKQLR+SND+ TW TA LLQL P SS S +
Sbjct: 762 EADMEGLKHALKLLSEAEKQLRVSNDRSTWFTATLLQLGSMPSPGTTHTGSSRRQSSRAT 821
Query: 778 PLDLENAGGRGMTRK---GGERAEISNKETGVPMNVRLENFHAENSGDF---IDGNMRKG 831
D + M K GG S V ++ H+ + F ID N K
Sbjct: 822 DDDPASVSREVMAYKQRIGGLHFSKSASPASV---IKRNGNHSHEAKPFSRVIDNNCYKS 878
Query: 832 ISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREG 891
S + + +A + S S ++ S + +IW + + R + ++ LY G
Sbjct: 879 SSSSQMIESEGSIASHENSIAST--MMLNQRSSEKLNDIWRKCIERCHSKTLRQLLYTHG 936
Query: 892 KLISVS-FGAAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEI 940
KLIS+S + F + K +AE+F I + E VL + + I
Sbjct: 937 KLISISEVEGILVAYIAFGENDIKLRAERFLSSITNSIEMVLRRSVEVRI 986
>gi|125579060|gb|EAZ20206.1| hypothetical protein OsJ_35804 [Oryza sativa Japonica Group]
Length = 949
Score = 353 bits (907), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 213/559 (38%), Positives = 312/559 (55%), Gaps = 63/559 (11%)
Query: 388 LASEGRSGG-QQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLY 446
L+ EG Q+N+ R L+QK+ PR+F +L+G N+VAQ+L + + KV +Y
Sbjct: 257 LSPEGTDAAFQENVPYTETPR--CLSQKFRPRSFSELIGLNVVAQSLLYSSCKGKVAPMY 314
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF 506
+F+GP GTGKTS ARIFA ALNC SLE+ +PCGFC C+ G+SR++KE+
Sbjct: 315 LFHGPRGTGKTSTARIFAAALNCLSLEEQRPCGFCKECVILFSGRSRDVKELDAAKMDRL 374
Query: 507 ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566
+ LL + S++++F+ D+C L D+WSAI K +D R V+I+++S +D+
Sbjct: 375 GRVKALLKSASLVPYSSRFKVFIVDECHLLPEDAWSAILKSLDEPYRHAVYIMITSDIDS 434
Query: 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626
LP I+ CQKF FPK+K ADI+Y L+ I +EG+E D D L I+++S+GSLRDAE+ L
Sbjct: 435 LPRTSITHCQKFHFPKIKVADIVYRLERICIEEGLEFDHDGLYFISAKSNGSLRDAEIML 494
Query: 627 EQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALM 686
+QLSLLG++I++ LV ELVG +SD++L++LLDLALS+DT NTV+ R +M + ++PL L+
Sbjct: 495 DQLSLLGKKITISLVHELVGSVSDDELIELLDLALSSDTTNTVRRARELMASAIDPLQLV 554
Query: 687 SQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDK 746
SQLA +I DIL+G + F R L++ ++KLR ALK LSE EKQLR S ++
Sbjct: 555 SQLANLIMDILSGRCQSAVTEVSKSFLGRYALAEVGIKKLRHALKILSETEKQLRTSRNQ 614
Query: 747 LTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGV 806
TW+T ALLQ ++ ++ S+ D+ G T + S+
Sbjct: 615 ATWVTVALLQFGTNESNLIAESN----------DMHAHSAIGYTDDWVSKVNSSS----- 659
Query: 807 PMNVRLENF-HAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRN 865
NF HA NS KS S RH R
Sbjct: 660 -------NFCHACNSN---------------------------KSNCSE--RHC---RRL 680
Query: 866 GIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFG---AAPTVQLTFRSHLTKSKAEKFKD 922
+E IW + + Q+ K FL +EG L SV A V + H+ S+AEK +
Sbjct: 681 KLENIWRRAIGKCQSRSAKNFLRKEGFLSSVHVTEELAIAEVGFSHPDHI--SRAEKMQS 738
Query: 923 QILQAFESVLGSPLTIEIR 941
I ++VLG + ++ +
Sbjct: 739 LIESTLQNVLGCNVEVKFK 757
>gi|297739441|emb|CBI29623.3| unnamed protein product [Vitis vinifera]
Length = 1078
Score = 353 bits (905), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 212/559 (37%), Positives = 322/559 (57%), Gaps = 33/559 (5%)
Query: 394 SGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHG 453
+G ++ G N R +L+QKY P F +L+GQN+V Q+L NA+ R ++ +Y+F GP G
Sbjct: 306 NGEREEEGSPENVR--SLSQKYRPMFFDELIGQNIVVQSLVNAISRGRIAPVYLFQGPRG 363
Query: 454 TGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLL 513
TGKTS ARIF ALNC ++ + KPCG C C GKSR+ +E+ + + LL
Sbjct: 364 TGKTSTARIFTAALNCLAVGETKPCGICRECSDFISGKSRHFREIDGTNKKGMDRMRYLL 423
Query: 514 DNMV--TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHII 571
M T P S Y++FV D+C L +W A K ++ P +VVFI ++ L+ +P +
Sbjct: 424 KTMPFGTPSPLSPYKVFVIDECHLLPSKTWLAFLKFLEEPPPQVVFIFITPDLENVPRTV 483
Query: 572 ISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL 631
+SRCQK+ F K+K+ DI+ L+ I+ E ++++ DAL+LIA +DGSLRDAE L+QLSL
Sbjct: 484 LSRCQKYLFNKIKEGDIVARLRKISDDENLDVESDALELIALNADGSLRDAETMLDQLSL 543
Query: 632 LGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT 691
LG+RI+ LV +LVG++SDEKL++LL+LA+S+DT TVK R +M++GV+P+ LMSQLA+
Sbjct: 544 LGKRITTSLVNDLVGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPIVLMSQLAS 603
Query: 692 VITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLT 751
+I DI+AG+Y + FF + L++ EM++L+ ALK LSEAEKQLR+S+++ TW T
Sbjct: 604 LIMDIIAGTYHIVDAQQSDSFFGGRSLTEAEMDRLKHALKLLSEAEKQLRVSSERSTWFT 663
Query: 752 AALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVR 811
A LLQL S S D + S S R + K E S ++ +
Sbjct: 664 ATLLQLG--------SPSPDPTLSGS--------SRRQSSKTTEDDPSSASRDATIVHKQ 707
Query: 812 LENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRH---VSGN------ 862
N H F +M K K T G Q ++ ++ H + GN
Sbjct: 708 KPNAHHMPRKSFSPISMPKSA---EKNSTHQGDLFQFRNSGASASSHDDVMMGNLVFRSI 764
Query: 863 SRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTV-QLTFRSHLTKSKAEKFK 921
+ + +++IW + R + ++ L+ GKL+S+S V + F+ K +AE+F
Sbjct: 765 NADKLDDIWERCIERCHSKTLRQLLHAHGKLVSISEAEGGLVAYVAFQDEDIKCRAERFL 824
Query: 922 DQILQAFESVLGSPLTIEI 940
I + E V+ S + ++I
Sbjct: 825 SSITNSIEIVMRSNVEVKI 843
>gi|326500876|dbj|BAJ95104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 974
Score = 352 bits (903), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 172/347 (49%), Positives = 241/347 (69%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L+QK+ PR+F +L+G N+VAQ+L + + K+ +Y+F+GP GTGKTS ARIFA ALNC
Sbjct: 281 LSQKFRPRSFSELIGLNVVAQSLLYSSCKGKIAPMYLFHGPRGTGKTSTARIFAAALNCL 340
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
SLE+ +PCGFC C+ G+SR++KE+ + LL + S++++F+
Sbjct: 341 SLEEQRPCGFCKECVILFSGRSRDVKEIDASKMDRLGRVKALLKSASLVPYSSRFKVFIV 400
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+C L D+WSAI K +D R V+I+++S LD+LP ++ CQKF FPK+K ADI++
Sbjct: 401 DECHLLLEDAWSAIVKSLDEPYRHTVYIMITSDLDSLPRTSVTYCQKFHFPKIKVADIVH 460
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
L+ I EG+E D DAL IA++S+GSLRDAE+ L+QLSLLG+R+++ LV ELVGL+SD
Sbjct: 461 RLERICIDEGLEFDHDALHFIAAKSNGSLRDAEIMLDQLSLLGKRVTISLVHELVGLVSD 520
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRR 710
++L++LLDLALS+DT NTV+ R +M + V+PL L+SQLA +I DIL+G +
Sbjct: 521 DELIELLDLALSSDTTNTVRRARELMASSVDPLQLVSQLANLIMDILSGRCQSAVTEVSK 580
Query: 711 KFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
F R L+ +EKLR ALK LSEAEKQLR S +K TW+T ALLQ
Sbjct: 581 SFLGRYALADVGIEKLRHALKILSEAEKQLRTSRNKATWVTVALLQF 627
>gi|357164239|ref|XP_003579992.1| PREDICTED: uncharacterized protein LOC100823838 [Brachypodium
distachyon]
Length = 977
Score = 352 bits (903), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 174/363 (47%), Positives = 249/363 (68%), Gaps = 4/363 (1%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L+QK+ PR+F +L+G N+VAQ+L + + KV +Y+F+GP GTGKTS ARIFA ALNC
Sbjct: 285 LSQKFRPRSFSELIGLNVVAQSLLYSSCKGKVAPMYLFHGPRGTGKTSTARIFAAALNCL 344
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
SLE+ +PCGFC C+ G+SR++KE+ + LL + S++++F+
Sbjct: 345 SLEEQRPCGFCKECVILFSGRSRDVKELDAAKLDRLGRVKALLKSASLVPYSSRFKVFIV 404
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+C L D+WSAI K +D R V+I+++S LD+LP I+ CQKF FPK+K ADI+Y
Sbjct: 405 DECHLLQEDAWSAIMKSLDEPYRHTVYIMITSDLDSLPRASITHCQKFHFPKIKVADIVY 464
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
L+ I +EG+E D D L IA++S+GSLRD+E+ L+QLSLLG+R++V LV ELVGL+SD
Sbjct: 465 RLERICIEEGLEFDHDGLYFIAAKSNGSLRDSEIMLDQLSLLGKRVTVSLVHELVGLVSD 524
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRR 710
++L++LLDLALS+DT NTV+ R +M + ++PL L+SQLA +I DIL+G +
Sbjct: 525 DELIELLDLALSSDTTNTVRRARELMASSIDPLQLVSQLANLIMDILSGRCQSAVTEVSK 584
Query: 711 KFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSA 770
F R L++ ++KLR ALK LSE EKQLR S +K TW+T ALLQ ++ ++ A
Sbjct: 585 SFLERYALAEVGIQKLRHALKILSETEKQLRTSRNKATWVTVALLQFGTNECNIV----A 640
Query: 771 DTS 773
DT+
Sbjct: 641 DTN 643
>gi|414880241|tpg|DAA57372.1| TPA: hypothetical protein ZEAMMB73_111215 [Zea mays]
Length = 1220
Score = 350 bits (897), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 238/686 (34%), Positives = 359/686 (52%), Gaps = 47/686 (6%)
Query: 280 CGIPWNWS-RIHHRGKTFLDMAGRSLTSCG--LSDSRIRKAGG------ASHSRNVPDMP 330
CGIP WS R H+G S SC LSD+ RK H R
Sbjct: 335 CGIPCYWSKRSKHKG---------SERSCSPSLSDTLRRKGTSLLCGSQTMHGRK----- 380
Query: 331 LVSDRSSSSTNSG-----AEALPLLVEASG---SQSTEHAGWVHDYSGELGIFADHLLKH 382
+SS S G ++ +PLL ++S S + V GEL + A L
Sbjct: 381 ----KSSGSNKYGYLKKSSQGVPLLGDSSHFAYSSFDSASDEVSTIFGELDLEALSRLDG 436
Query: 383 AVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKV 442
S S+ + D+ H++L+QKY PR+F ++VGQN V Q+LSNA+ R ++
Sbjct: 437 RRWSSCKSQDGIALSVSGADHVVSDHRSLSQKYRPRSFLEIVGQNFVVQSLSNAIARERI 496
Query: 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVG 502
Y+F+GP GTGKTS ARI + AL+C + + KPCG C C G N+ EV
Sbjct: 497 APAYLFHGPRGTGKTSSARILSAALSCTATGETKPCGVCTECSDFFTGNGTNLIEVDATN 556
Query: 503 NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562
+ L++N+ S S+Y++FV D+C +S WSA K +D RVVFI ++
Sbjct: 557 RKGINRVRHLIENIPASATSSRYKVFVVDECHMVSSKVWSAFMKFLDEPLPRVVFIFITI 616
Query: 563 SLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA 622
+ LP ++SRCQK+ F K+KD DI+ L+ IA KE ++++ AL LIA SDGSLRDA
Sbjct: 617 DPENLPRSVVSRCQKYMFSKIKDIDIVCRLRKIAMKENLDVELAALDLIALNSDGSLRDA 676
Query: 623 EMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEP 682
E L+QL LLG++I+ LV +LVG++S+EKL+DLL++A+S++T TVK R +M++GV+P
Sbjct: 677 ETMLDQLCLLGKKITPSLVNDLVGVVSEEKLLDLLEIAMSSNTAETVKRSRELMDSGVDP 736
Query: 683 LALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRM 742
+ALMSQLA +I DI+AG+Y + ++ E+E+L+QAL+ LS+AEKQ+R+
Sbjct: 737 MALMSQLAGLIMDIIAGTYRLADPTCGGDGIGGRNITDAELERLQQALRILSDAEKQIRL 796
Query: 743 SNDKLTWLTAALLQLAPDQQYVLP---SSSADTSFSHSPLDLENAGGRGMTRKGGERAEI 799
S+++ TW TAALLQL + SSS ++ + S +E +R
Sbjct: 797 SSERSTWFTAALLQLGSGHNSEITQSRSSSKQSAKATSETMMEAMRESSASRSTAHHLST 856
Query: 800 SNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAG---- 855
+ ++++ + H+ + MR ++ H AL + S
Sbjct: 857 FPDSKKI-VDLKTTSGHSSPHAS-LSSRMRHNENMIYAEHMSVDRALLDSAQTSISSEQK 914
Query: 856 GRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQ-LTFRSHLTK 914
G H SG S N + IW++ + + ++ LY GKL SV V + F + K
Sbjct: 915 GMH-SGISDN-LTRIWMKCIENCHSKTLRQLLYDHGKLTSVKECEGTIVAFIAFEDNDIK 972
Query: 915 SKAEKFKDQILQAFESVLGSPLTIEI 940
+A++F I + E+VL + + I
Sbjct: 973 FRAQRFISSIRNSMETVLKCNVEVRI 998
>gi|297814494|ref|XP_002875130.1| hypothetical protein ARALYDRAFT_484163 [Arabidopsis lyrata subsp.
lyrata]
gi|297320968|gb|EFH51389.1| hypothetical protein ARALYDRAFT_484163 [Arabidopsis lyrata subsp.
lyrata]
Length = 1222
Score = 350 bits (897), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 247/704 (35%), Positives = 370/704 (52%), Gaps = 61/704 (8%)
Query: 277 RNGCGIPWNWSR--IHHRGKTFLDMAGRSLTSCGLSDSRIRKAGGA----------SHSR 324
R GCGIP W++ + HRG RS S SD+ +R+ G + H+R
Sbjct: 308 RQGCGIPCYWTKKAMKHRG------GCRSCCSPSFSDT-LRRTGSSILCGSQSVYRRHNR 360
Query: 325 NVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAGWVHDYSGELGIFADHLLKHAV 384
+ + + + S LPLL + G G+ D L +
Sbjct: 361 HSSGGYI---KQKIACRSAQGVLPLLTYGGDGRGGSSLG--------TGLSDDELSTNYG 409
Query: 385 DSDLASEGRSGG---------QQNL------GDNRNGRH----QNLTQKYMPRTFRDLVG 425
+ DL ++ R G Q L G+ +G ++ +QKY P F +L+G
Sbjct: 410 ELDLEAQSRLDGRRWSTSYRSQDGLEAVALDGEGEDGSTPETIRSFSQKYRPMFFEELIG 469
Query: 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485
Q++V Q+L NAV R ++ +Y+F GP GTGKTS ARIF+ ALNC + E+ KPCG+C C
Sbjct: 470 QSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVATEEMKPCGYCKECN 529
Query: 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP--PSQYRIFVFDDCDTLSPDSWSA 543
GKS++ E+ + + LL N+ T P S Y++FV D+C L +W +
Sbjct: 530 EFMSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSMYKVFVIDECHLLPLKTWLS 589
Query: 544 ISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEI 603
K ++ ++VVFI +++ L+ +P I SRCQKF F K+KD+DI+ L+ IAS E +++
Sbjct: 590 FLKFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFDKLKDSDIVVRLKKIASDENLDV 649
Query: 604 DKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSA 663
D AL LIA +DGSLRDAE LEQLSLLG+RI+ LV ELVG++SDEKL++LL+LALS+
Sbjct: 650 DLHALDLIAMNADGSLRDAETMLEQLSLLGKRITTALVNELVGVVSDEKLLELLELALSS 709
Query: 664 DTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEM 723
DT TVK R +++ G +P+ LMSQLA++I DI+AG+Y +++ F + L++ +M
Sbjct: 710 DTAETVKRARELLDLGADPIVLMSQLASLIMDIIAGTYKVVDEKYSNAFLDGRNLTEADM 769
Query: 724 EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA--PDQQYVLPSSSADTSFSHSPLDL 781
E L+ ALK LSEAEKQLR+SND+ TW TA LLQL P SS S + D
Sbjct: 770 EGLKHALKLLSEAEKQLRVSNDRSTWFTATLLQLGSMPSPGTTHTGSSRRQSSRATDDDP 829
Query: 782 ENAGGRGMTRK----GGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRK 837
+ M K G +++++ + + N + A+ ID N K S +
Sbjct: 830 SSISREVMAYKQRIGGLHFSKLASPASVIKRNGN-HSHEAKALSRVIDNNCYKSSSSSQV 888
Query: 838 RHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVS 897
+ + +A + S S ++ S + +IW + + R + ++ LY GKLIS+S
Sbjct: 889 IESEASIASHENSVAST--MMLNQRSSEKLNDIWRKCIERCHSKTLRQLLYTHGKLISIS 946
Query: 898 -FGAAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEI 940
+ F K +AE+F I + E VL + + I
Sbjct: 947 EVEGILVAYIAFGETDIKLRAERFLSSITNSIEMVLRRSVEVRI 990
>gi|414586712|tpg|DAA37283.1| TPA: hypothetical protein ZEAMMB73_202347 [Zea mays]
Length = 814
Score = 350 bits (897), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 206/535 (38%), Positives = 302/535 (56%), Gaps = 62/535 (11%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L+QK+ PR+F +L+G N+VAQ+L + + KV +Y+F+GP GTGKTS ARIFA ALNC
Sbjct: 119 LSQKFRPRSFSELIGLNVVAQSLLYSTCKGKVAPMYLFHGPRGTGKTSTARIFAAALNCV 178
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
SLE+ +PCGFC C+ GKSR++KE+ + LL + S++++F+
Sbjct: 179 SLEEQRPCGFCKECVILFSGKSRDVKELDAAKMDRLGRVKALLKSASLVPYSSRFKVFIV 238
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+C L D+WSAI K +D R V+I+++S +++LP I+ CQKF FPK+K ADI+Y
Sbjct: 239 DECHLLREDAWSAILKSLDEPYRHTVYIMITSDIESLPRASITHCQKFHFPKIKVADIVY 298
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
L+ I +EG+E D D L IA++S+GSLRD+E+ L+QLSLLG+++++ LV ELVG +SD
Sbjct: 299 RLERICIEEGLEFDHDGLYFIAAKSNGSLRDSEIMLDQLSLLGKKVTISLVHELVGSVSD 358
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRR 710
++L++LLDLALS+DT NTV+ R +M + ++PL L+SQLA +I DIL+G +
Sbjct: 359 DELIELLDLALSSDTTNTVRRARELMGSAIDPLQLVSQLANLIMDILSGRCQSAVTEVSK 418
Query: 711 KFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSA 770
F R LS+ ++KLR ALK LSE EKQLR S ++ TW+T ALLQ + ++ P+ A
Sbjct: 419 SFLGRYALSEVGIKKLRHALKILSETEKQLRTSRNQATWVTVALLQFSTNE----PNPVA 474
Query: 771 DTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRK 830
+T+ + HA + + D +
Sbjct: 475 ETN----------------------------------------DMHAHSVTGYTDDWV-- 492
Query: 831 GISLDRKRHTGSGMALQQKSPLS-AGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYR 889
K H+ + S S RH R +E IW + + ++ K FL +
Sbjct: 493 -----SKVHSSANFCQACNSSKSNCSERHC---RRLKLENIWRRAIGKCRSRSAKSFLRK 544
Query: 890 EGKLISVSFG---AAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIR 941
EG L SV A V HL S+AEK + I + + VLG +EIR
Sbjct: 545 EGFLSSVHVTEELAIAEVGFEHPDHL--SRAEKMQSLIESSLQHVLG--CNVEIR 595
>gi|242073490|ref|XP_002446681.1| hypothetical protein SORBIDRAFT_06g020470 [Sorghum bicolor]
gi|241937864|gb|EES11009.1| hypothetical protein SORBIDRAFT_06g020470 [Sorghum bicolor]
Length = 855
Score = 348 bits (893), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 208/535 (38%), Positives = 303/535 (56%), Gaps = 62/535 (11%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L+QK+ PR+F +L+G N+VAQ+L + + KV +Y+F+GP GTGKTS ARIFA ALNC
Sbjct: 163 LSQKFRPRSFSELIGLNVVAQSLLYSSCKGKVAPMYLFHGPRGTGKTSTARIFAAALNCV 222
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
SLE+ +PCGFC C+ GKSR++KE+ + LL + S++++F+
Sbjct: 223 SLEEQRPCGFCKECVILFSGKSRDVKELDAAKMDRLGRVKALLKSASLVPYSSRFKVFII 282
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+C L D+WSAI K +D R V+I+++S +++LP I+ CQKF FPK+K ADI+Y
Sbjct: 283 DECHLLQEDAWSAILKSLDEPYRHTVYIMITSDIESLPRTSITHCQKFHFPKIKVADIVY 342
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
L+ I +EG+E D D L IA++S+GSLRD+E+ L+QLSLLG++I++ LV ELVG +SD
Sbjct: 343 RLERICIEEGLEFDHDGLYFIAAKSNGSLRDSEIMLDQLSLLGKKITISLVHELVGSVSD 402
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRR 710
++L++LLDLALS+DT NTV+ R +M + ++PL L+SQLA +I DIL+G +
Sbjct: 403 DELIELLDLALSSDTTNTVRRARELMGSAIDPLQLVSQLANLIMDILSGRCQSAVTEVSK 462
Query: 711 KFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSA 770
F R LS+ ++KLR ALK LSE EKQLR S ++ TW+T ALLQ + ++ P+ +A
Sbjct: 463 SFLGRYALSEIGIKKLRHALKILSETEKQLRTSRNQATWVTVALLQFSTNE----PNLAA 518
Query: 771 DTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRK 830
+ P D+ HA + + D + K
Sbjct: 519 E------PNDM----------------------------------HAHSVTGYTDDWVSK 538
Query: 831 GISLDRKRHTGSGMALQQKSPLS-AGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYR 889
H+ + S S RH R +E IW + + ++ K FL +
Sbjct: 539 V-------HSSANFCQACNSSKSNCSERHC---RRLKLENIWRRAIGKCRSRSAKSFLRK 588
Query: 890 EGKLISVSFG---AAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIR 941
EG L SV A V HL S+AEK + I + + VLG +EIR
Sbjct: 589 EGFLSSVHVTEELAIAEVGFGHPDHL--SRAEKMQSLIECSLQHVLG--CNVEIR 639
>gi|242058891|ref|XP_002458591.1| hypothetical protein SORBIDRAFT_03g036320 [Sorghum bicolor]
gi|241930566|gb|EES03711.1| hypothetical protein SORBIDRAFT_03g036320 [Sorghum bicolor]
Length = 1176
Score = 346 bits (888), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 232/685 (33%), Positives = 359/685 (52%), Gaps = 43/685 (6%)
Query: 280 CGIPWNWS-RIHHRGKTFLDMAGRSLTSCG--LSDSRIRKAGG------ASHSRNVPDMP 330
CGIP WS R H+G S SC LSD+ RK H R
Sbjct: 289 CGIPCYWSKRSKHKG---------SERSCSPSLSDTLRRKGSSLLCGSQTIHGRK----- 334
Query: 331 LVSDRSSSSTNSG-----AEALPLLVEASG---SQSTEHAGWVHDYSGELGIFADHLLKH 382
+SS S G ++ +PLL ++S S + V GEL + A L
Sbjct: 335 ----KSSGSNKYGYFKKSSQGVPLLGDSSHFAYSSFDSASDEVSTIFGELDLEALSRLDG 390
Query: 383 AVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKV 442
S S+ + D+ H++L+QKY PR+F ++VGQN V Q+LSNA+ R ++
Sbjct: 391 RRWSSCKSQDGIALSVSGADHVVSDHRSLSQKYRPRSFLEIVGQNFVVQSLSNAIARERI 450
Query: 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVG 502
Y+F+GP GTGKTS ARI + AL+C + + KPCG C C G N+ EV
Sbjct: 451 APAYLFHGPRGTGKTSSARILSAALSCTATGETKPCGVCTECSDFFTGNGINLIEVDATN 510
Query: 503 NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562
+ L++N+ S S+Y++FV D+C +S WSA K +D RVVFI ++
Sbjct: 511 RKGINRVRHLIENIPASATSSRYKVFVVDECHMVSSKVWSAFMKFLDEPLPRVVFIFITI 570
Query: 563 SLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA 622
+ LP ++SRCQK+ F K+KD DI+ L+ IA KE ++++ AL LIA SDGSLRDA
Sbjct: 571 DPENLPRSVVSRCQKYMFSKIKDIDIVCRLRKIAMKENLDVELAALDLIALNSDGSLRDA 630
Query: 623 EMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEP 682
E L+QL LLG++I+ LV +LVG++S+EKL+DLL++A+S+DT TVK R +M++GV+P
Sbjct: 631 ETMLDQLCLLGKKITPSLVNDLVGVVSEEKLLDLLEIAMSSDTAETVKRSRELMDSGVDP 690
Query: 683 LALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRM 742
+ALMSQLA +I DI+AG+Y + ++ E+E+L+QAL+ LS+AEKQ+R+
Sbjct: 691 MALMSQLAGLIMDIIAGTYRLADPTCGGDGIGGRNITDAELERLQQALRILSDAEKQIRL 750
Query: 743 SNDKLTWLTAALLQLAPDQQYVLP---SSSADTSFSHSPLDLENAGGRGMTRKGGERAEI 799
S+++ TW TAALLQL + SSS ++ + S +E +R
Sbjct: 751 SSERSTWFTAALLQLGSGHNSEITQSRSSSKQSAKATSETMMEAVRESSASRTTSHHLST 810
Query: 800 SNKETGVPMNVRLENFHAENSG-DFIDGNMR--KGISLDRKRHTGSGMALQQKSPLSAGG 856
+ ++++ + H+ G + MR + + R + ++ +S+
Sbjct: 811 FPDSKKI-VDLKTTSGHSSPQGLASLSSRMRPNENMIYAECRSVDRALLESAQTGISSEQ 869
Query: 857 RHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQ-LTFRSHLTKS 915
+ ++ + + IW + + + ++ LY GKL SV V + F + K
Sbjct: 870 KAMNCGISDNLTRIWRKCIENCHSKTLRQLLYDHGKLASVKECEGTIVAFIAFEDNDIKF 929
Query: 916 KAEKFKDQILQAFESVLGSPLTIEI 940
+A++F I + E+VL + + I
Sbjct: 930 RAQRFISSIRNSMETVLKCNVEVRI 954
>gi|356520145|ref|XP_003528725.1| PREDICTED: uncharacterized protein LOC100814391 [Glycine max]
Length = 1237
Score = 346 bits (888), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 216/522 (41%), Positives = 294/522 (56%), Gaps = 66/522 (12%)
Query: 277 RNGCGIPWNWSR--IHHRGKTFLDMAGRSLTSCGLSDS-----------------RIRKA 317
R GCGIP WS+ HRG M G S S LSD+ R R++
Sbjct: 309 RQGCGIPCYWSKRTPKHRG-----MCG-SCYSPSLSDTLRRKGSSMLCGSQTIYPRHRRS 362
Query: 318 GGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAGWVHDYSGELGIFAD 377
ASH R + S S +PLL + + G G D
Sbjct: 363 ASASHKRRL------------SLRSARGVIPLLTNSGDVREGSSVG--------TGRSDD 402
Query: 378 HLLKHAVDSDLASEGRSGGQQNLGDNR----------NGR---------HQNLTQKYMPR 418
L + + DL R G++ R NG +++ +QKY P
Sbjct: 403 ELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEYDGTPENNRSFSQKYRPM 462
Query: 419 TFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPC 478
F +L+GQN+V Q+L +AV R ++ +Y+F GP GTGKTS ARIFA ALNC S + KPC
Sbjct: 463 FFGELIGQNVVVQSLISAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCASPNESKPC 522
Query: 479 GFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVT--SRPPSQYRIFVFDDCDTL 536
G+C C+ GKS ++ EV + LL + T S QY IFV D+C L
Sbjct: 523 GYCRECVDFISGKSSDLLEVDGTNKRGIDKARYLLKRLSTGSSSASPQYTIFVIDECHLL 582
Query: 537 SPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIA 596
+W K ++ P+RVVFI ++S LD +P I SRCQK+ F K+KD DI+ L+ I+
Sbjct: 583 PSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKIS 642
Query: 597 SKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDL 656
++E ++++ DAL LIA +DGSLRDAE LEQLSLLG+RI+ LV ELVG++SDEKL++L
Sbjct: 643 TQENLDVEADALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLEL 702
Query: 657 LDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQ 716
L+LA+S+DTV TVK R +M++GV+P+ LMSQLA +I DI+AGSY + FF +
Sbjct: 703 LELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVIDTKPDDSFFGGR 762
Query: 717 PLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
L++ E+E+L+ ALK LSEAEKQLR S+++ TW TA LLQL
Sbjct: 763 SLNQSELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLG 804
>gi|395399800|gb|AFN58239.1| trichome branching-like protein [Gossypium arboreum]
Length = 1223
Score = 346 bits (887), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 208/556 (37%), Positives = 319/556 (57%), Gaps = 26/556 (4%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
++L+QKY P F +L+GQN+V Q+L NAV + ++ Y+F GP GTGKTS ARIF+ ALN
Sbjct: 460 KSLSQKYKPMFFDELIGQNIVVQSLMNAVSKGRIAPFYLFQGPRGTGKTSTARIFSAALN 519
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVT--SRPPSQYR 526
CQ+ + KPCG C C GK R E + + LL ++ T + S+Y+
Sbjct: 520 CQTTDDDKPCGCCTECTEFTSGKRREFWEFDSTNRRGIDRVRYLLKSLSTGLASSSSRYK 579
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+FV D+C L W A+ K ++ P R+VFI +++ LD +P + SRCQK+ F K+KD
Sbjct: 580 VFVIDECHLLPSKIWLALLKFLEDPPPRLVFIFITTDLDNVPRTVQSRCQKYLFNKIKDC 639
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV- 645
DI+ L+ +++ E +E++ DAL LIA +DGSLRDAE L+QLSLLG+RI+ LV ELV
Sbjct: 640 DIMARLRKMSADENLEVESDALDLIALNADGSLRDAETMLDQLSLLGKRITASLVNELVV 699
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G++SDEKL++LL+LA+S+DT TVK R +M++GV+P+ LMSQLA++I DI+AG+Y+
Sbjct: 700 GVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYNIVD 759
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL----APDQ 761
++ FF + +++ E+E+L+ ALK LSEAEKQLR+S+++ TW TA LLQL +PD
Sbjct: 760 SKYSHSFFGGRAVTEAEVERLKDALKLLSEAEKQLRVSSERSTWFTATLLQLGSLPSPDL 819
Query: 762 QYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSG 821
S L + + K G + + K T + + N + G
Sbjct: 820 SQSGSSRRQSAKTIEDDLQSTSREAKAYKPKSGTQ-RMPWKSTTASLQKSV-NGKSTRQG 877
Query: 822 DF---IDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGN----SRNG--IEEIWL 872
+ IDG T G L + +A ++GN RN +++IW
Sbjct: 878 ELVSRIDG-------YGSNSKTSRGRYLDGSATPAACDNSLNGNMILACRNSEKLDDIWA 930
Query: 873 EVLNRIQNNGTKEFLYREGKLISVSFGAAPTV-QLTFRSHLTKSKAEKFKDQILQAFESV 931
+ +N+ + ++ L GKL+S++ + L F KS+AE+F I + E V
Sbjct: 931 KCINKCHSKTLRQLLLAHGKLLSLAEDEGVLIAYLAFADGDIKSRAERFLSSITNSMEIV 990
Query: 932 LGSPLTIEIRCESKID 947
+ + ++I + +D
Sbjct: 991 MRRNVEVQIILLADVD 1006
>gi|356564432|ref|XP_003550458.1| PREDICTED: uncharacterized protein LOC100791561 [Glycine max]
Length = 1236
Score = 345 bits (885), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 215/502 (42%), Positives = 296/502 (58%), Gaps = 26/502 (5%)
Query: 277 RNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDSRIRKAGGASHSRNVPDMPLVSDRS 336
R GCGIP WS+ R M G S S LSD+ RK G+S + RS
Sbjct: 306 RQGCGIPCYWSK---RTPKHRRMCG-SCYSPSLSDTLRRK--GSSMLCGSQSIYPTHRRS 359
Query: 337 SSSTN-------SGAEALPLLVEASGSQ--STEHAGWVHD-YSGELGIFADHLLKHAVDS 386
+S+++ S +PLL + + S+ GW D S G L
Sbjct: 360 ASASHKRRLSLRSARGVIPLLTNSGDVREGSSVGTGWSDDELSTNFGELDLEGLSRLDGR 419
Query: 387 DLASEGRSG-GQQNLGDNRNGRHQN-------LTQKYMPRTFRDLVGQNLVAQALSNAVM 438
+S RS G + + N G +++ +QKY P F +L GQN+V Q+L NAV
Sbjct: 420 RWSSSCRSQEGLEIVALNGEGEYESTPENNRSFSQKYRPMFFGELFGQNIVVQSLINAVS 479
Query: 439 RRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV 498
R ++ +Y+F GP GTGKTS ARIFA ALNC S ++ KPCG+C C+ GKS ++ EV
Sbjct: 480 RGRIAPVYLFQGPRGTGKTSTARIFAAALNCASPDESKPCGYCRECVDFISGKSSDLLEV 539
Query: 499 GPVGNFDFESILDLLDNMVTSRPPS--QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVV 556
+ LL + + + QY IFV D+C L +W K ++ P RVV
Sbjct: 540 DGTNKRGIDKARYLLKRLSSGSSSASPQYTIFVIDECHLLPSKTWLGFLKFLEEPPLRVV 599
Query: 557 FILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSD 616
FI ++S LD +P I SRCQK+ F K+KD DI+ L+ I+++E ++++ DAL LIA +D
Sbjct: 600 FIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVEADALDLIAMNAD 659
Query: 617 GSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIM 676
GSLRDAE LEQLSLLG+RI+ LV ELVG++SDEKL++LL+LA+S+DTV TVK R +M
Sbjct: 660 GSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTVETVKRARELM 719
Query: 677 ETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEA 736
++GV+P+ LMSQLA +I DI+AGSY + FF + L++ E+E+L+ ALK LSEA
Sbjct: 720 DSGVDPMVLMSQLAGLIMDIIAGSYAVIDTKPDDSFFGGRSLNESELERLKNALKLLSEA 779
Query: 737 EKQLRMSNDKLTWLTAALLQLA 758
EKQLR S+++ TW TA LLQL
Sbjct: 780 EKQLRTSSERSTWFTATLLQLG 801
>gi|413918695|gb|AFW58627.1| hypothetical protein ZEAMMB73_598041 [Zea mays]
Length = 995
Score = 343 bits (881), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 240/351 (68%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L+QK+ PR+F +LVG N+VAQ+L + + KV +Y+F+GP GTGKTS ARIFA ALNC
Sbjct: 302 LSQKFRPRSFSELVGLNVVAQSLLYSCCKGKVAPMYLFHGPRGTGKTSTARIFAAALNCV 361
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
SLE+ +PCGFC C+ GK R++KE+ + LL + S++++F+
Sbjct: 362 SLEEQRPCGFCKECVILFSGKGRDVKELDVAKMGRLGRVKALLKSASLVPYSSRFKVFII 421
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+C L D+WSAI K +D R V+I+++S +++LP I+RCQKF FPK+K ADI+Y
Sbjct: 422 DECHLLQEDAWSAILKSLDEPYRHTVYIMITSDIESLPRASITRCQKFHFPKIKVADIVY 481
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
L+ I EG+E D D L IA++S GSLRD+E+ L+QLSLLG++I++ LV ELVG +SD
Sbjct: 482 RLEKICIGEGLEFDHDGLYFIAAKSSGSLRDSEVMLDQLSLLGKKITISLVHELVGSVSD 541
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRR 710
++L++LLDLALS+DT NTV+ R +M + ++PL L+SQLA +I DIL+G +
Sbjct: 542 DELIELLDLALSSDTTNTVRRARELMGSAIDPLQLVSQLANLIMDILSGRCQSAVSEVSK 601
Query: 711 KFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQ 761
F R LS+ ++KLR ALK LSE EKQLR S ++ TW+T ALLQ ++
Sbjct: 602 SFLGRYALSEVGIKKLRHALKILSETEKQLRTSRNQATWVTVALLQFGTNE 652
>gi|30683811|ref|NP_172898.2| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|332191046|gb|AEE29167.1| AAA-type ATPase family protein [Arabidopsis thaliana]
Length = 1116
Score = 343 bits (879), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 237/693 (34%), Positives = 369/693 (53%), Gaps = 59/693 (8%)
Query: 277 RNGCGIPWNWSR--IHHRGKTFLDMAGRSLTSCGLSDSRIRK-----AGGASHSRNVPDM 329
R GCGIP+ W++ + HRG RS S SD+ RK G S R
Sbjct: 282 RQGCGIPFYWTKRNLKHRG------GCRSCCSPSFSDTLRRKGSSILCGSQSVYRRHRHS 335
Query: 330 PLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAGWVHDYSGELGIFADHLLKHAVDSDLA 389
++ + S LPLL S+ G +G D L + DL
Sbjct: 336 SGRFNKQKLALRSAKGVLPLLKYGGDSRGGSSIG--------IGYSDDDLSTDFGEIDLE 387
Query: 390 SEGRSGGQQNLGDNRNGRH---------------QNLTQKYMPRTFRDLVGQNLVAQALS 434
++ R G++ ++ Q+L+QKY P F +L+GQ++V Q+L
Sbjct: 388 AQSRLDGRRWSSCCKSQDGEREEEEEGGSTPESIQSLSQKYKPMFFDELIGQSIVVQSLM 447
Query: 435 NAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL-EQPKPCGFCNSCISHDRGKSR 493
NAV + +V +Y+F GP GTGKTS ARI + ALNC + E+ KPCG+C C + GKSR
Sbjct: 448 NAVKKGRVAHVYLFQGPRGTGKTSTARILSAALNCDVVTEEMKPCGYCKECSDYMLGKSR 507
Query: 494 NIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVFDDCDTLSPDSWSAISKVVDRA 551
++ E+ E + LL ++T P S +Y++FV D+C L +W ++ K ++
Sbjct: 508 DLLELDAGKKNGAEKVRYLLKKLLTLAPQSSQRYKVFVIDECHLLPSRTWLSLLKFLENP 567
Query: 552 PRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLI 611
++ VF+ +++ LD +P I SRCQK+ F K++D DI+ L+ IAS E ++++ AL LI
Sbjct: 568 LQKFVFVCITTDLDNVPRTIQSRCQKYIFNKVRDGDIVVRLRKIASDENLDVESQALDLI 627
Query: 612 ASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKN 671
A +DGSLRDAE LEQLSL+G+RI+V LV ELVG++SD+KL++LL+LALS+DT TVK
Sbjct: 628 ALNADGSLRDAETMLEQLSLMGKRITVDLVNELVGVVSDDKLLELLELALSSDTAETVKK 687
Query: 672 LRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALK 731
R +++ G +P+ +MSQLA++I DI+AG+Y +++ F R+ L++ ++E+L+ ALK
Sbjct: 688 ARELLDLGADPILMMSQLASLIMDIIAGAYKALDEKYSEAFLDRRNLTEADLERLKHALK 747
Query: 732 TLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPS---SSADTSFSHSPLDLENAGGRG 788
LSEAEKQLR+S D+ TW A LLQL +PS + +S S E + R
Sbjct: 748 LLSEAEKQLRVSTDRSTWFIATLLQLGS-----MPSPGTTHTGSSRRQSSRATEESISRE 802
Query: 789 MTRKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQ 848
+ +R+ + T P ++R SG+ + S + S MA
Sbjct: 803 VI-AYKQRSGLQCSNTASPTSIR-------KSGNLVREVKLSSSSSEVLESDTS-MASHD 853
Query: 849 KSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVS-FGAAPTVQLT 907
+ +A ++ + + +IW++ ++R + K+ LY GKL+S+S +
Sbjct: 854 DT--TASTMTLTCRNSEKLNDIWIKCVDRCHSKTLKQLLYAHGKLLSISEVEGILVAYIA 911
Query: 908 FRSHLTKSKAEKFKDQILQAFESVLGSPLTIEI 940
F K++AE+F I + E VL + + I
Sbjct: 912 FGEGEIKARAERFVSSITNSIEMVLRRNVEVRI 944
>gi|168053850|ref|XP_001779347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669263|gb|EDQ55854.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 356
Score = 343 bits (879), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 169/353 (47%), Positives = 245/353 (69%), Gaps = 6/353 (1%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
+ L QKY P+ F ++VGQN+ ++LS A+++ KV +Y+F GP GTGKTS AR+FA LN
Sbjct: 7 RTLNQKYRPKNFNEIVGQNVAVKSLSTAIVKGKVAPVYLFMGPRGTGKTSAARVFAAGLN 66
Query: 469 CQSLEQPK-PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
C S ++ + PCG C C + +S +++++ N D S+ ++ + P +QY++
Sbjct: 67 CLSPDRARRPCGICRECGTMKLNRSADVRQIDAASNIDAASMRAMMGSFT---PHAQYKV 123
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
F+ + CD LS D W+A KV++ PR VVFIL+++ + +P SRCQKF F K+KDAD
Sbjct: 124 FIVEGCDLLSSDIWNAFLKVLEEPPRNVVFILITTDAERIPSTAFSRCQKFHFSKLKDAD 183
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGL 647
I+ L+ +A+KE + ++ AL LIA+RSDGSLRDAE+ L+QL LL + +S+ V ELVGL
Sbjct: 184 IVSRLELLATKEDLHVEVGALDLIAARSDGSLRDAEIFLDQLCLLDRNVSISSVHELVGL 243
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR 707
+ + K ++LLD ALSAD V+TV+ +R ++ +GVEPL+L+SQL +ITDILAGS+D ++
Sbjct: 244 LPNNKTLELLDYALSADAVHTVRTMREVLISGVEPLSLVSQLGALITDILAGSFDLHQEA 303
Query: 708 HRRKFFRRQPLS--KEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ FF R K+E +LR+ALK LSEAEKQLR+S D+ TWLTAALLQ A
Sbjct: 304 RKEGFFNRNLCESVKQEHLRLREALKILSEAEKQLRVSTDQATWLTAALLQFA 356
>gi|413916697|gb|AFW56629.1| hypothetical protein ZEAMMB73_394019 [Zea mays]
Length = 1174
Score = 342 bits (877), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 202/555 (36%), Positives = 309/555 (55%), Gaps = 39/555 (7%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
++L+QKY PR F ++V QN+ Q+LSNA+ R ++ Y+F GP GTGKTS ARIF+ ALN
Sbjct: 416 RSLSQKYRPRAFPEIVSQNIAVQSLSNAITRERIAPAYLFQGPRGTGKTSTARIFSAALN 475
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
C + KPCG CN C GK+ NIKEV I LL+N+ S P S+Y++F
Sbjct: 476 CLTTGDNKPCGVCNHCTDFFSGKASNIKEVDASNRKSIGIIKHLLENLPPSAPLSRYKVF 535
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
V D+C + WSA K +D VVFI ++ + +P ++SRCQK+ F K+KD D
Sbjct: 536 VVDECHMIPSKLWSAFMKFLDEPFPYVVFIFITIDPNNVPRAVVSRCQKYVFSKIKDIDT 595
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLI 648
+ L+ I KE ++++ AL LIA SDGSLRDAE L+QLSLLG++I+ LV +LVG++
Sbjct: 596 VCRLRKICVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVV 655
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK-DR 707
S+EKL+DLL++A+S DT TVK R +M++G +P+ALMSQLA +I DI+AG+Y
Sbjct: 656 SEEKLLDLLEIAMSGDTAETVKRSRELMDSGTDPMALMSQLAGLIMDIIAGTYKLADVAC 715
Query: 708 HRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL---------- 757
+ L++ E+E+L+QALK LS+AEKQ+ +S+++ TW TAALLQL
Sbjct: 716 CNGSAVGGRSLTEAELERLQQALKILSDAEKQISLSSERPTWFTAALLQLGCGHSSDVNQ 775
Query: 758 -----------APDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGV 806
A D + S+ +FSHS G++++ + IS +
Sbjct: 776 QKGSTQEHHKVANDAMSEIARESSSRTFSHS------LSAFGISKRTLDSKTISVHSS-- 827
Query: 807 PMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNG 866
P + + + + + G R + + +G QQ++ V+G S +
Sbjct: 828 PQVLASHSSRLRLNDNLVYGECRSVDRVPLNSNQLNGNCSQQRA-------LVNGIS-DS 879
Query: 867 IEEIWLEVLNRIQNNGTKEFLYREGKLISV-SFGAAPTVQLTFRSHLTKSKAEKFKDQIL 925
+ ++W+ + + + L GKL+S+ F T + KS+A++F I
Sbjct: 880 LAQVWIRCIENCHSKTLQHLLLDHGKLVSIRQFEGHATAFIAIEDCGIKSRAQRFLSSIT 939
Query: 926 QAFESVLGSPLTIEI 940
+ E+VL + ++I
Sbjct: 940 NSLETVLKCNVEVKI 954
>gi|62733734|gb|AAX95843.1| hypothetical protein LOC_Os11g13990 [Oryza sativa Japonica Group]
gi|77549593|gb|ABA92390.1| ATPase, AAA family protein [Oryza sativa Japonica Group]
Length = 1121
Score = 342 bits (876), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/364 (47%), Positives = 246/364 (67%), Gaps = 5/364 (1%)
Query: 394 SGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHG 453
SG + D R+ L+QKY PR+F +LVGQ+ V Q+L+NA++R ++ Y+F+GP G
Sbjct: 325 SGADHAVSDQRS-----LSQKYRPRSFNELVGQSFVVQSLNNAIIRERIAPAYLFHGPRG 379
Query: 454 TGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLL 513
TGKTS ARIF+ AL+C ++ + KPCG C C G N+ EV I L+
Sbjct: 380 TGKTSAARIFSAALSCVAIGENKPCGACMECTDFFTGNGINLIEVDASNRKSINRIRHLI 439
Query: 514 DNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIIS 573
+N+ S S+Y++FV D+C +S WSA K +D RVVFI ++ + LP +IS
Sbjct: 440 ENIPASATSSRYKVFVVDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENLPRAVIS 499
Query: 574 RCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG 633
RCQK+ F K+KD DI+ L+ IA KE ++++ AL LIA SDGSLRDAE L+QLSLLG
Sbjct: 500 RCQKYMFSKIKDIDIVCRLRKIAVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLG 559
Query: 634 QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVI 693
++I+ LV +LVG++S+EKL+DLL++A+SADT TVK R +M++GV+P+ALMSQLA +I
Sbjct: 560 KKITPSLVNDLVGVVSEEKLLDLLEIAMSADTAETVKRSRELMDSGVDPMALMSQLAGLI 619
Query: 694 TDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAA 753
DI+AG+Y + + ++ E+E+L+QALK LS+AEKQ+R+S+++ TW TAA
Sbjct: 620 MDIIAGTYRLADPTCGGEGIGGRNITDAELERLQQALKILSDAEKQIRLSSERSTWFTAA 679
Query: 754 LLQL 757
LLQL
Sbjct: 680 LLQL 683
>gi|357157005|ref|XP_003577650.1| PREDICTED: uncharacterized protein LOC100846453 [Brachypodium
distachyon]
Length = 1180
Score = 341 bits (874), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 203/547 (37%), Positives = 303/547 (55%), Gaps = 47/547 (8%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
++L+QKY PR++ ++VGQN V Q+L+NA++R ++ Y+F+GP GTGKTS ARIF+ AL+
Sbjct: 415 RSLSQKYRPRSYHEIVGQNFVIQSLTNAIIRERIAPAYLFHGPRGTGKTSVARIFSAALS 474
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
C + + KPCG C C G N+ EV I L++N+ S S+Y++F
Sbjct: 475 CVANGENKPCGICTECTDFFTGNGTNLIEVDASNRKGINRIRQLIENIPASATSSRYKVF 534
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
V D+C +S WSA K +D RVVFI ++ + +P +ISRCQK+ F K+KD DI
Sbjct: 535 VVDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENIPRAVISRCQKYMFSKIKDIDI 594
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLI 648
+ L+ IA KE ++I+ AL LIA SDGSLRDAE L+QLSLLG++I+ LV +LVG++
Sbjct: 595 VCRLRKIAVKENLDIELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVV 654
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH 708
S+EKL+DLL++A+S+DT TVK R +M++GV+P+ALMSQLA +I DI+AG+Y
Sbjct: 655 SEEKLLDLLEIAMSSDTAETVKRSRELMDSGVDPMALMSQLAGLIMDIIAGTYRLADPTC 714
Query: 709 RRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQY----- 763
R ++ E+E+L+QALK LS+AEKQ+R+S+++ TW TAALLQL
Sbjct: 715 GEGIGGRN-ITDAELERLQQALKILSDAEKQIRLSSERATWFTAALLQLGSGHDSEVTQS 773
Query: 764 -----------------VLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGV 806
+ SSA + SH PL T +G R +
Sbjct: 774 RSSSKKSAKTTSDAVLEAVRESSASRTTSH-PL---------FTIRGSRRTASGH---ST 820
Query: 807 PMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNG 866
P + + + + I G R S DR + + P+ G S +
Sbjct: 821 PHGLASSSSRLRPNENLIYGESR---SADRVLPDSAQTSNSDDQPIIIG-------SSDN 870
Query: 867 IEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQ-LTFRSHLTKSKAEKFKDQIL 925
+ +IW + + + ++ L GKL S+ + + F KS+A++F I
Sbjct: 871 LVKIWRNCIEKCHSKTLQQLLSDHGKLASIKECEGYLLAFIAFEDSTIKSRAQRFVSSIR 930
Query: 926 QAFESVL 932
+ E+VL
Sbjct: 931 NSMETVL 937
>gi|297849856|ref|XP_002892809.1| hypothetical protein ARALYDRAFT_888824 [Arabidopsis lyrata subsp.
lyrata]
gi|297338651|gb|EFH69068.1| hypothetical protein ARALYDRAFT_888824 [Arabidopsis lyrata subsp.
lyrata]
Length = 1130
Score = 341 bits (874), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 238/698 (34%), Positives = 371/698 (53%), Gaps = 69/698 (9%)
Query: 277 RNGCGIPWNWSR--IHHRGKTFLDMAGRSLTSCGLSDSRIRK-----AGGASHSRNVPDM 329
R GCGIP+ W++ + HRG RS S SD+ RK G S R
Sbjct: 296 RQGCGIPFYWTKRNLKHRG------GCRSCCSPSFSDTLRRKGSSILCGSQSAYRRHRHS 349
Query: 330 PLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAGWVHDYSGELGIFADHLLKHAVDSDLA 389
++ + S LPLL S+ G +G D L + DL
Sbjct: 350 NGRYNKQKLALRSVKGVLPLLKYGGDSRGGSSIG--------IGCSDDDLSTDFGELDLE 401
Query: 390 SEGRSGGQQ---------------NLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALS 434
++ R G++ + Q+L+QKY P F +L+GQ++V Q+L
Sbjct: 402 AQSRLDGRRWSTCCKSQDGEGEEEEEEGSTPESIQSLSQKYKPMFFDELIGQSIVVQSLM 461
Query: 435 NAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL-EQPKPCGFCNSCISHDRGKSR 493
+AV + ++ +Y+F GP GTGKTS ARI + ALNC + E+ KPCG+C C + GKSR
Sbjct: 462 SAVKKGRIAHVYLFQGPRGTGKTSTARILSAALNCDVVTEEMKPCGYCKECSDYMLGKSR 521
Query: 494 NIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVFDDCDTLSPDSWSAISKVVDRA 551
++ E+ E + LL ++T P S +Y++FV D+C L +W ++ K ++
Sbjct: 522 DLLELDAGKKNGAEKVRYLLKKLLTLAPQSSPRYKVFVIDECHLLPSMTWLSLLKFLENP 581
Query: 552 PRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLI 611
++VVFI +++ LD +P I SRCQK+ F K++D DI+ L+ IA E ++++ AL LI
Sbjct: 582 LQKVVFICITTDLDNVPRTIQSRCQKYLFNKVRDGDIVVRLRKIALDENLDVESQALDLI 641
Query: 612 ASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKN 671
A +DGSLRDAE LEQLSL+G+RI+V LV ELVG++SD+KL++LL+LALS+DT TVK
Sbjct: 642 ALNADGSLRDAETMLEQLSLMGKRITVDLVNELVGVVSDDKLLELLELALSSDTAETVKK 701
Query: 672 LRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALK 731
R +++ G +P+ +MSQLA++I DI+AG+Y +++ F R+ L++ ++E+L+ ALK
Sbjct: 702 ARELLDLGADPVLMMSQLASLIMDIIAGAYKALDEKYSEAFLDRRNLTEADLERLKHALK 761
Query: 732 TLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTR 791
LSEAEKQLR+S D+ TW A LLQL +PS +H+ G +R
Sbjct: 762 LLSEAEKQLRVSTDRSTWFIATLLQLGS-----VPSPGT----THT----------GSSR 802
Query: 792 KGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISL--DRKRHTGSGMALQQK 849
+ RA + V + NS +MRK +L + K + S L+ +
Sbjct: 803 RQSSRATDESISREVIAYKQRSGLQCSNSAS--PTSMRKSGNLVHEVKLSSSSREVLESE 860
Query: 850 SPLSAGGRHVSGN----SRNG--IEEIWLEVLNRIQNNGTKEFLYREGKLISVS-FGAAP 902
+ +++ + + RN + +IW++ ++R + K+ LY GKL+S+S
Sbjct: 861 TSIASHDDTTTSSMTLTCRNSEKLNDIWIKCVDRCHSKTLKQLLYAHGKLLSISEVEGIL 920
Query: 903 TVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEI 940
+ F K++AE+F I + E VL + + I
Sbjct: 921 VAYIAFGEREIKARAERFVSSITNSIEMVLRRNVEVRI 958
>gi|293332681|ref|NP_001168187.1| uncharacterized protein LOC100381942 [Zea mays]
gi|223946573|gb|ACN27370.1| unknown [Zea mays]
gi|413946122|gb|AFW78771.1| hypothetical protein ZEAMMB73_073351 [Zea mays]
Length = 479
Score = 340 bits (872), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 225/507 (44%), Positives = 296/507 (58%), Gaps = 68/507 (13%)
Query: 686 MSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSND 745
MSQLAT+ITDILAG+Y T++R RRKFF+R LSK++MEKLRQALKTLSEAEKQLR+SND
Sbjct: 1 MSQLATIITDILAGTYTLTRERVRRKFFKRPTLSKDDMEKLRQALKTLSEAEKQLRVSND 60
Query: 746 KLTWLTAALLQLAPDQQYVLPSS------------------SADTSFSHSPLDLENAGGR 787
K+TWLTAALLQLAPD+QYVLPSS + ++ HS + AG R
Sbjct: 61 KMTWLTAALLQLAPDKQYVLPSSSPSTSLIQGLFTCPEGDIARNSVMDHSDI---YAGAR 117
Query: 788 GMTRK---GGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGM 844
+ R G + +N +G N+ N+H R G HT
Sbjct: 118 SLARASDLGNQYHRDANPVSGSSNNM-ANNYHV---------GRRPG------EHTPDSH 161
Query: 845 ALQQKSPLSAGGRHVSGNSRNG---IEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAA 901
L G V+ SR G E IW VL +Q++ + L REG+LISVS G A
Sbjct: 162 V------LPTGATRVNEGSRYGKTDSEMIWQAVLENVQSDSLRRLLAREGRLISVSLGTA 215
Query: 902 PTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPAS 961
PTVQL F S + KSKAEK++ QILQAFESVL S + +EIR ESK D AG H P++
Sbjct: 216 PTVQLIFNSRVNKSKAEKYRGQILQAFESVLSSTIILEIRYESKDDLAAG-HAPVISAYP 274
Query: 962 KDGSSQMVIDSESIIGNRGPMAGPIEISKRIPRDEGIN-GASSQAQQLHSESLEMGRTEI 1020
+DGSS +V+ S + +G + +R+ +D + G+S+Q + + S+ + EI
Sbjct: 275 EDGSSNLVL-RRSFTKHSSVSSGGENLIRRLQKDSVVQLGSSNQTRWMQSDPHILTEGEI 333
Query: 1021 VEVPASPRETKDHAENRADYSKRASLSERKKLGEQSQ---------------CQSIVRSK 1065
+EV + + ++R + L Q+Q ++IVR K
Sbjct: 334 IEVGSQMDWRAEQDSGIVMANRRQEAVSGEGLSSQNQEISQGGKIVNNGDGRQKNIVRGK 393
Query: 1066 VSLAHVIQQAEGCTQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICR 1125
VSLA+VI QAE C+Q+ GWS+ KAVSIAEKLEQ+NLRLEPRS SLLCWKAS +RRK+
Sbjct: 394 VSLANVINQAESCSQQGGWSRHKAVSIAEKLEQDNLRLEPRS-SLLCWKASSTSRRKLSA 452
Query: 1126 LKIRRRKPLSLLKLVSCGKCLSSKSPR 1152
LKIR R+ +L +L CG+C+S +SPR
Sbjct: 453 LKIRTRRSRALSRLALCGRCISVRSPR 479
>gi|357154954|ref|XP_003576959.1| PREDICTED: uncharacterized protein LOC100826587 [Brachypodium
distachyon]
Length = 1204
Score = 339 bits (870), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 206/562 (36%), Positives = 305/562 (54%), Gaps = 31/562 (5%)
Query: 395 GGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGT 454
Q + D R+ L+QKY P F ++VGQ++V Q+LSN+++R ++ Y+ GP GT
Sbjct: 401 AADQAMSDKRS-----LSQKYRPSIFSEIVGQDIVVQSLSNSIIRERIAPAYLLQGPRGT 455
Query: 455 GKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLD 514
GKTS ARIF+ AL+C + KPCG C C G N+ EV I LL+
Sbjct: 456 GKTSVARIFSAALSCAATGDNKPCGTCKECTEFFSGNGINLIEVDASNRKSINRIKHLLE 515
Query: 515 NMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISR 574
N+ S S+Y++FV D+C +S WSA K +D RVVFI ++ + LP +ISR
Sbjct: 516 NIPPSATSSRYKVFVVDECHMVSSKVWSAFVKFLDEQLPRVVFIFITIDPNNLPRAVISR 575
Query: 575 CQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ 634
CQK+ F K+KD DI+ L+ I KE ++++ AL LIA SDGSLRDAE L+QLSLLG+
Sbjct: 576 CQKYIFSKIKDIDIVCRLRKICMKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLGK 635
Query: 635 RISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVIT 694
+I+ LV +LVG++S+EKL+DLL++A+S+DT TVK R +M++G++P+ALMSQLA +I
Sbjct: 636 KITPSLVNDLVGVVSEEKLLDLLEIAMSSDTAETVKRSRELMDSGIDPIALMSQLAGLIM 695
Query: 695 DILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAAL 754
DI+AG+Y + L+ E+E+L+QALK LS+AEKQ+R+S+++ TW TAAL
Sbjct: 696 DIIAGTYKLADSTCNGVGIGGRSLTAGELERLQQALKILSDAEKQIRLSSERSTWFTAAL 755
Query: 755 LQLAPDQQYVLPSSSADT-SFSHSPLDLENAGGRGMTRKGGERAEIS------------- 800
LQL + T S D GR + +S
Sbjct: 756 LQLGSGHSSNMNQPRNSTGEHPKSANDAVTEAGRESSSSRTASNSLSAFGVSKKTLDPKI 815
Query: 801 NKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVS 860
N P + + +G G R S+DR R + M + S V+
Sbjct: 816 NSGQSSPQALSSYSSRPRLNGISAYGECR---SVDRIRQDYTEMNI-----CSEQRALVT 867
Query: 861 GNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQ-LTFRSHLTKSKAEK 919
GNS N + +IW+ + + ++ L+ GKL+S T+ + F S+ ++
Sbjct: 868 GNSDN-LAQIWMRCIENCHSKILQQLLFDHGKLVSTRQCEGRTIAFIAFEDRGIMSRVQR 926
Query: 920 FKDQILQAFESVLGSPLTIEIR 941
F I + E+VL +E+R
Sbjct: 927 FLSSITNSMETVL--RCNVEVR 946
>gi|326528909|dbj|BAJ97476.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1174
Score = 338 bits (868), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 208/565 (36%), Positives = 319/565 (56%), Gaps = 37/565 (6%)
Query: 394 SGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHG 453
SG + D R+ L+QKY PR++ ++VGQN V Q+LSNA++R ++ Y+F+GP G
Sbjct: 396 SGADHAVSDQRS-----LSQKYRPRSYHEIVGQNFVVQSLSNAIIRERIAPAYLFHGPRG 450
Query: 454 TGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLL 513
TGKTS ARIF+ AL+C + + KPCG C C G N+ EV I L+
Sbjct: 451 TGKTSAARIFSAALSCTANGENKPCGVCMECNDFFSGNGINLIEVDASNKKGINRIRHLI 510
Query: 514 DNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIIS 573
+N+ S S+Y++FV D+C +S WSA K +D VVFI ++ + LP +IS
Sbjct: 511 ENIPASATSSRYKVFVVDECHMVSSKVWSAFMKFLDEPLPHVVFIFITIDPENLPRAVIS 570
Query: 574 RCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG 633
RCQK+ F K+KD DI+ L+ IA KE ++I+ AL LIA SDGSLRDAE L+QLSLLG
Sbjct: 571 RCQKYMFSKIKDIDIVCRLRKIAVKETLDIELAALDLIALNSDGSLRDAETMLDQLSLLG 630
Query: 634 QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVI 693
++I+ LV +LVG++S+E L+DLL++A+S+DT TVK R +M++GV+P+ALMSQLA +I
Sbjct: 631 KKITPSLVNDLVGVVSEENLLDLLEIAMSSDTAETVKRSRELMDSGVDPMALMSQLAGLI 690
Query: 694 TDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAA 753
DI+AG+Y R ++ E+E+L+QALK LS+AEKQ+R+S+++ TW TAA
Sbjct: 691 MDIIAGTYRLADPTCGEGIGGRN-ITDAELERLQQALKILSDAEKQIRLSSERSTWFTAA 749
Query: 754 LLQLAPDQQYVLP---SSSADTSFSHSPLDLENAGGRGMTRK--------GGERAEISNK 802
LLQL + SSS ++ + S LE +R G R + ++
Sbjct: 750 LLQLGSGHDSEITHSRSSSKQSAKATSETMLEAVRESSASRSVSHPLFTIRGSRKTLDHR 809
Query: 803 ET---GVPMNVRLENFHAENSGDFIDGNMRK--GISLDRKRHTGSGMALQQKSPLSAGGR 857
P ++ + S + I G+ R + LD + + S ++ P+
Sbjct: 810 TASGRSSPNDLASLSSRMRPSDNLIYGDCRSVDRVLLDSAQASNS----TEQKPI----- 860
Query: 858 HVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISV-SFGAAPTVQLTFRSHLTKSK 916
++G+S + +IW + ++ + ++ L GKL S+ F ++F S+
Sbjct: 861 -INGSS--DLIQIWRKCIDNCHSKTLQQLLSDHGKLASIKEFEGYLVAFISFEDSKIMSR 917
Query: 917 AEKFKDQILQAFESVLGSPLTIEIR 941
A++F I + E+ L +E+R
Sbjct: 918 AQRFVSSIRNSMETAL--RCNVEVR 940
>gi|326498857|dbj|BAK02414.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1174
Score = 338 bits (867), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 208/565 (36%), Positives = 319/565 (56%), Gaps = 37/565 (6%)
Query: 394 SGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHG 453
SG + D R+ L+QKY PR++ ++VGQN V Q+LSNA++R ++ Y+F+GP G
Sbjct: 396 SGADHAVSDQRS-----LSQKYRPRSYHEIVGQNFVVQSLSNAIIRERIAPAYLFHGPRG 450
Query: 454 TGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLL 513
TGKTS ARIF+ AL+C + + KPCG C C G N+ EV I L+
Sbjct: 451 TGKTSAARIFSAALSCTANGENKPCGVCMECNDFFSGNGINLIEVDASNKKGINRIRHLI 510
Query: 514 DNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIIS 573
+N+ S S+Y++FV D+C +S WSA K +D VVFI ++ + LP +IS
Sbjct: 511 ENIPASATSSRYKVFVVDECHMVSSKVWSAFMKFLDEPLPHVVFIFITIDPENLPRAVIS 570
Query: 574 RCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG 633
RCQK+ F K+KD DI+ L+ IA KE ++I+ AL LIA SDGSLRDAE L+QLSLLG
Sbjct: 571 RCQKYMFSKIKDIDIVCRLRKIAVKETLDIELAALDLIALNSDGSLRDAETMLDQLSLLG 630
Query: 634 QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVI 693
++I+ LV +LVG++S+E L+DLL++A+S+DT TVK R +M++GV+P+ALMSQLA +I
Sbjct: 631 KKITPSLVNDLVGVVSEENLLDLLEIAMSSDTAETVKRSRELMDSGVDPMALMSQLAGLI 690
Query: 694 TDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAA 753
DI+AG+Y R ++ E+E+L+QALK LS+AEKQ+R+S+++ TW TAA
Sbjct: 691 MDIIAGTYRLADPTCGEGIGGRN-ITDAELERLQQALKILSDAEKQIRLSSERSTWFTAA 749
Query: 754 LLQLAPDQQYVLP---SSSADTSFSHSPLDLENAGGRGMTRK--------GGERAEISNK 802
LLQL + SSS ++ + S LE +R G R + ++
Sbjct: 750 LLQLGSGHDSEITHSRSSSKQSAKATSETMLEAVRESSASRSVSHPLFTIRGSRKTLDHR 809
Query: 803 ET---GVPMNVRLENFHAENSGDFIDGNMRK--GISLDRKRHTGSGMALQQKSPLSAGGR 857
P ++ + S + I G+ R + LD + + S ++ P+
Sbjct: 810 TASGRSSPNDLASLSSRMRPSDNLIYGDCRSVDRVLLDSAQASNS----TEQKPI----- 860
Query: 858 HVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISV-SFGAAPTVQLTFRSHLTKSK 916
++G+S + +IW + ++ + ++ L GKL S+ F ++F S+
Sbjct: 861 -INGSS--DLIQIWRKCIDNCHSKTLQQLLSDHGKLASIKEFEGYLVAFISFEDSKIMSR 917
Query: 917 AEKFKDQILQAFESVLGSPLTIEIR 941
A++F I + E+ L +E+R
Sbjct: 918 AQRFVSSIRNSMETAL--RCNVEVR 940
>gi|7262689|gb|AAF43947.1|AC012188_24 Contains similarity to DNA Pol III Gamma and Tau from Chlamydia
trachomatis gb|AE001306.1 and contains an AAA (ATPase)
PF|00004 domain [Arabidopsis thaliana]
Length = 1071
Score = 336 bits (862), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 236/700 (33%), Positives = 369/700 (52%), Gaps = 66/700 (9%)
Query: 277 RNGCGIPWNWSR--IHHRGKTFLDMAGRSLTSCGLSDSRIRK-----AGGASHSRNVPDM 329
R GCGIP+ W++ + HRG RS S SD+ RK G S R
Sbjct: 282 RQGCGIPFYWTKRNLKHRG------GCRSCCSPSFSDTLRRKGSSILCGSQSVYRRHRHS 335
Query: 330 PLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAGWVHDYSGELGIFADHLLKHAVDSDLA 389
++ + S LPLL S+ G +G D L + DL
Sbjct: 336 SGRFNKQKLALRSAKGVLPLLKYGGDSRGGSSIG--------IGYSDDDLSTDFGEIDLE 387
Query: 390 SEGRSGGQQNLGDNRNGRH---------------QNLTQKYMPRTFRDLVGQNLVAQALS 434
++ R G++ ++ Q+L+QKY P F +L+GQ++V Q+L
Sbjct: 388 AQSRLDGRRWSSCCKSQDGEREEEEEGGSTPESIQSLSQKYKPMFFDELIGQSIVVQSLM 447
Query: 435 NAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL-EQPKPCGFCNSCISHDRGKSR 493
NAV + +V +Y+F GP GTGKTS ARI + ALNC + E+ KPCG+C C + GKSR
Sbjct: 448 NAVKKGRVAHVYLFQGPRGTGKTSTARILSAALNCDVVTEEMKPCGYCKECSDYMLGKSR 507
Query: 494 NIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVFDDCDTLSPDSWSAISKVVDRA 551
++ E+ E + LL ++T P S +Y++FV D+C L +W ++ K ++
Sbjct: 508 DLLELDAGKKNGAEKVRYLLKKLLTLAPQSSQRYKVFVIDECHLLPSRTWLSLLKFLENP 567
Query: 552 PRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLI 611
++ VF+ +++ LD +P I SRCQK+ F K++D DI+ L+ IAS E ++++ AL LI
Sbjct: 568 LQKFVFVCITTDLDNVPRTIQSRCQKYIFNKVRDGDIVVRLRKIASDENLDVESQALDLI 627
Query: 612 ASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKN 671
A +DGSLRDAE LEQLSL+G+RI+V LV ELVG++SD+KL++LL+LALS+DT TVK
Sbjct: 628 ALNADGSLRDAETMLEQLSLMGKRITVDLVNELVGVVSDDKLLELLELALSSDTAETVKK 687
Query: 672 LRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQ-------PLSKEEME 724
R +++ G +P+ +MSQLA++I DI+AG+Y +++ F R+ +++ ++E
Sbjct: 688 ARELLDLGADPILMMSQLASLIMDIIAGAYKALDEKYSEAFLDRRNCEYLKLQMTEADLE 747
Query: 725 KLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPS---SSADTSFSHSPLDL 781
+L+ ALK LSEAEKQLR+S D+ TW A LLQL +PS + +S S
Sbjct: 748 RLKHALKLLSEAEKQLRVSTDRSTWFIATLLQLGS-----MPSPGTTHTGSSRRQSSRAT 802
Query: 782 ENAGGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTG 841
E + R + +R+ + T P ++R SG+ + S +
Sbjct: 803 EESISREVI-AYKQRSGLQCSNTASPTSIR-------KSGNLVREVKLSSSSSEVLESDT 854
Query: 842 SGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVS-FGA 900
S MA + +A ++ + + +IW++ ++R + K+ LY GKL+S+S
Sbjct: 855 S-MASHDDT--TASTMTLTCRNSEKLNDIWIKCVDRCHSKTLKQLLYAHGKLLSISEVEG 911
Query: 901 APTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEI 940
+ F K++AE+F I + E VL + + I
Sbjct: 912 ILVAYIAFGEGEIKARAERFVSSITNSIEMVLRRNVEVRI 951
>gi|255540419|ref|XP_002511274.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223550389|gb|EEF51876.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 1025
Score = 335 bits (858), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 221/576 (38%), Positives = 319/576 (55%), Gaps = 56/576 (9%)
Query: 387 DLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLY 446
DLA E GQ+NL N ++ +QK+ P++F +LVGQN+V ++L +A+ + +V LY
Sbjct: 272 DLA-ETIPHGQRNLKLITNESPRSFSQKFRPKSFEELVGQNVVVRSLLSAIAQGRVTSLY 330
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF 506
+F+GP GTGKTS +RIFA ALNC SLE+ KPCG C C+ G+SR++KEV V
Sbjct: 331 LFHGPRGTGKTSASRIFAAALNCLSLEEYKPCGLCRECVQFFSGRSRDVKEVDSVRINRV 390
Query: 507 ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566
E I L+ N S++++F+ D+C L ++W+ I ++ P+ VVF++V+ LD
Sbjct: 391 ERIRALIKNAAIPPVSSRFKVFIVDECHLLQGETWATILNSLENLPQHVVFVMVTPHLDK 450
Query: 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626
LP ++ QK+ FPK+KDADI L+ I +EGI+ D+ AL IA++S+GSLRDAEM L
Sbjct: 451 LPRSAVTHSQKYHFPKIKDADIAVRLKNICIEEGIDFDQVALDFIAAKSNGSLRDAEMML 510
Query: 627 EQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALM 686
+Q+SLLG+RI++ L EL G++SD++L+DLLDLALS+DT NTV R +M + ++P+ L+
Sbjct: 511 DQMSLLGKRITMSLAYELAGVVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPMQLV 570
Query: 687 SQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDK 746
SQLA +I D+LAG RRKF R ++ +M++L ALK LSE EKQLRMS +
Sbjct: 571 SQLANIIMDMLAGKCQEDSSEVRRKFSSRHA-TEADMQRLSHALKVLSETEKQLRMSKSQ 629
Query: 747 LTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGV 806
TWLT ALLQL+ + L ++ + S + NA R
Sbjct: 630 STWLTVALLQLSSLEAPFLNANDPNPS-------IRNAQDR------------------- 663
Query: 807 PMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNG 866
GDF + TG + L G H G+ +
Sbjct: 664 -------------DGDFCSTS-----------STGESLKLLLPCSCEDGKLHNGGDCKAT 699
Query: 867 IEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTV-QLTFRSHLTKSKAEKFKDQIL 925
+E IW Q+N + FL ++GKL S+ V +L F SKAEK I
Sbjct: 700 LESIWKNATELCQSNSLRNFLGKQGKLSSLCVNQDLAVAELEFHRPDYVSKAEKSWKTIA 759
Query: 926 QAFESVLGSPLTIEIR---CESKIDTQAGFHLPLML 958
A +S+LG + I I C+S + + LP L
Sbjct: 760 SALQSILGRNVEIRINLVLCDSALKCKKLRKLPFSL 795
>gi|449431904|ref|XP_004133740.1| PREDICTED: uncharacterized protein LOC101212356 [Cucumis sativus]
gi|449478091|ref|XP_004155220.1| PREDICTED: uncharacterized protein LOC101227259 [Cucumis sativus]
Length = 1267
Score = 324 bits (830), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 255/731 (34%), Positives = 379/731 (51%), Gaps = 83/731 (11%)
Query: 260 MEEEDEEYGERNVTRAPRNGCGIPWNWSR--IHHRGKTFLDMAGRSLTSCGLSDSRIRKA 317
+ + D+E +R + R GCGIP WS+ HRG + G S S LSD+ RK
Sbjct: 319 INDADDEVDDR-LDFPGRQGCGIPCYWSKRTPKHRG-----ICG-SCCSPSLSDTLRRKG 371
Query: 318 GG---ASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAGWVHDYSGELGI 374
S S + S + ++ S LPLL ++ G G
Sbjct: 372 SSILFGSQSIYSRRKSINSSKRRFASGSARGVLPLLTNSADGGVGSSIG--------TGR 423
Query: 375 FADHLLKHAVDSDLASEGRSGGQQNLGDNR----------NGR---------HQNLTQKY 415
D L + + DL + R G++ R NG ++ +QKY
Sbjct: 424 SDDELSTNFGELDLEALSRLDGRRWSSSCRSHEGLEIVALNGEVEGGGTPESTRSFSQKY 483
Query: 416 MPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQP 475
P F +L+GQN+V Q+L NA+ R ++ +Y+F GP GTGKT+ ARIFA ALNC + E+
Sbjct: 484 KPMFFNELIGQNIVVQSLINAISRGRIAPVYLFQGPRGTGKTAAARIFAAALNCLAPEEN 543
Query: 476 KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVFDDC 533
KPCG+C C GK +++ EV + I L + + + + +Y+IF+ D+C
Sbjct: 544 KPCGYCRECTDFMAGKQKDLLEVDGTNKKGIDKIRYQLKLLSSGQSSAFFRYKIFLVDEC 603
Query: 534 DTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQ 593
L +W A K+ + P+RVVFI +++ LD++P I SRCQK+ F K+KD D++ L+
Sbjct: 604 HLLPSKAWLAFLKLFEEPPQRVVFIFITTDLDSVPRTIQSRCQKYLFNKIKDCDMVERLK 663
Query: 594 WIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKL 653
I++ E +++D DAL LIA +DGSLRDAE LEQLSLLG+RI+ LV ELVG++SDEKL
Sbjct: 664 RISADENLDVDLDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGIVSDEKL 723
Query: 654 VDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFF 713
++LL LA+S++T TVK R +M++GV+PL LMSQLA++I DI+AG+Y+ + F
Sbjct: 724 LELLALAMSSNTAETVKRARELMDSGVDPLVLMSQLASLIMDIIAGTYNIIDTKDGASIF 783
Query: 714 RRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL----APDQQYVLPSSS 769
+ LS+ E+E+L+ ALK LSEAEKQLR+S+++ TW TA LLQL +PD + SS
Sbjct: 784 GGRSLSEAEVERLKHALKFLSEAEKQLRVSSERSTWFTATLLQLGSISSPD--FTQTGSS 841
Query: 770 ADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNV-RLENFHAENSGD------ 822
S + D + + K A++ G P ++ L+N + N D
Sbjct: 842 RRQSCKTTDDDPSSTSNGTIAYKQKSFAQLMPPNLGSPTSLCNLKNGNYNNQADMVPMVD 901
Query: 823 ------------FIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEI 870
FI+G K S R+ T M + K NS + I
Sbjct: 902 NLIYNSKPTHKQFIEG---KDSSFSREDVTLRNMVFRSK------------NSEK-LNSI 945
Query: 871 WLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTV-QLTFRSHLTKSKAEKFKDQILQAFE 929
W+ + R + ++ LY GKL+S+S + + F KS+AE+F I + E
Sbjct: 946 WVHCIERCHSKTLRQLLYAHGKLLSISESEGTLIAYVAFEDVDIKSRAERFLSSITNSME 1005
Query: 930 SVLGSPLTIEI 940
VL + + I
Sbjct: 1006 MVLRCNVEVRI 1016
>gi|357477253|ref|XP_003608912.1| DNA polymerase III subunit gamma/tau [Medicago truncatula]
gi|355509967|gb|AES91109.1| DNA polymerase III subunit gamma/tau [Medicago truncatula]
Length = 936
Score = 318 bits (815), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 197/534 (36%), Positives = 309/534 (57%), Gaps = 50/534 (9%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
++L+ K+ P++F DLVGQN+V ++LS A+ R ++ Y+F+GP GTGKTS +RIFA ALN
Sbjct: 278 RSLSMKFRPKSFNDLVGQNMVGKSLSGAISRGRIASFYLFHGPRGTGKTSASRIFAAALN 337
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP-PSQYRI 527
C SLE+ +PCG C+ C+ G+S+++KEV + + L+ N T+ P S+Y++
Sbjct: 338 CISLEERRPCGLCSECVLFFSGRSKDVKEVDSLRINRPDKAKSLVKNACTTAPFSSRYKV 397
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
F+ D+C L+ ++W+ + + + VVF++++ L+ LP ISR Q++ F K+KDAD
Sbjct: 398 FIIDECQLLNKETWATLLNSLGVFSQHVVFVMITPDLEKLPRSAISRAQRYHFTKIKDAD 457
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGL 647
I L+ I +EG+E ++DAL IA++S GSLRDAEM L+QLSLLG++I++ LV EL G+
Sbjct: 458 IASRLKRICVEEGLESEQDALDFIAAKSCGSLRDAEMMLDQLSLLGKKITISLVYELTGV 517
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR 707
ISD++L+DLLDL+LS+DT NTV R ++ + ++PL L+SQLA +I DILAG + T
Sbjct: 518 ISDDELLDLLDLSLSSDTSNTVIRARELLRSRIDPLQLISQLANLIMDILAGKCELTGSE 577
Query: 708 HRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPS 767
RR+F R L++ M+KL AL+ LSE EKQLR+S ++ TW TAALLQL+ L
Sbjct: 578 IRRRFSDRHILAESSMQKLSHALRILSETEKQLRISKNQTTWFTAALLQLSS-----LEY 632
Query: 768 SSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGN 827
SS D + S + R + + G+ S+ +
Sbjct: 633 SSVDANDSKLCI-------RAASNRDGDLCSTSSTAESL--------------------- 664
Query: 828 MRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFL 887
+H +G ++ + V + + ++ IW + ++ K FL
Sbjct: 665 ----------KHLATGKCAEKSYKI-----EVQDDDKATLDCIWYKATEICESKRLKAFL 709
Query: 888 YREGKLISVSFGAA-PTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEI 940
++GKL SV V+L F + ++AEK QI + + +LG + + I
Sbjct: 710 RKQGKLSSVCINQGLAAVELEFHHRVYVARAEKSWKQIASSLQFILGCNIELRI 763
>gi|224119534|ref|XP_002318098.1| predicted protein [Populus trichocarpa]
gi|222858771|gb|EEE96318.1| predicted protein [Populus trichocarpa]
Length = 965
Score = 318 bits (814), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 210/557 (37%), Positives = 318/557 (57%), Gaps = 56/557 (10%)
Query: 387 DLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLY 446
D+A R G+++ N ++L+QK+ P++F +LVGQN+V ++L A+ + ++ LY
Sbjct: 272 DVAETTR--GKRSWKHTTNETPRSLSQKFRPKSFDELVGQNVVVRSLLGAISKGRITSLY 329
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF 506
+F+GP GTGKTS +RIFA ALNC S E KPCG C C++ G+SR++KEV +
Sbjct: 330 LFHGPRGTGKTSASRIFAAALNCLSREY-KPCGVCRECVAFFSGRSRDVKEVDSMRINRA 388
Query: 507 ESILDLLDNMVTSRPP--SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564
+ I L+ N S PP S++++F+ D+C L ++W + ++ + VVF++++ L
Sbjct: 389 KGIRSLIKN--ASMPPISSRFKVFIVDECHLLHGETWGTVLNSLENLSQNVVFVMITPEL 446
Query: 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEM 624
D LP +SR QK+ FPK+KDADI L+ I +E ++ D+ AL IA++S GSLRDAE+
Sbjct: 447 DMLPRSAVSRSQKYHFPKIKDADIAGRLRNICVEEDLDFDQVALDFIAAKSSGSLRDAEI 506
Query: 625 TLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLA 684
L+QLSLLG+RI++ L EL+G++SD++L DLLDLALS+DT +TV R +M + ++P+
Sbjct: 507 MLDQLSLLGKRITMSLAHELIGVVSDDELFDLLDLALSSDTSSTVIRARELMRSRIDPMR 566
Query: 685 LMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSN 744
L+SQLA +I D+LAG RRKF R+ S+ +M++L ALK LSE+EKQLRMS
Sbjct: 567 LVSQLANLIMDVLAGKCQDNSSEVRRKFSRKHA-SEGDMQRLSHALKILSESEKQLRMSK 625
Query: 745 DKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKET 804
++ TWLT ALLQL +S SP+D+ ++ + R G +R
Sbjct: 626 NQSTWLTVALLQL--------------SSLEASPMDVNDS--KSSMRNGHDR-------- 661
Query: 805 GVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSR 864
GDF G SL +H + L + V G+ +
Sbjct: 662 ---------------DGDF-SSTPSTGESL---KH----LVLHSCEDRKSERLQVQGDCK 698
Query: 865 NGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTV-QLTFRSHLTKSKAEKFKDQ 923
++ IW ++N + FL ++GKL S+ F V +L F SKAEK
Sbjct: 699 VTLDSIWKRASELCKSNSLRNFLRKQGKLSSLHFDKGLAVAELEFHHPNYASKAEKSWKF 758
Query: 924 ILQAFESVLGSPLTIEI 940
I + ++VLG + I I
Sbjct: 759 IASSLQTVLGCNVEIRI 775
>gi|186513260|ref|NP_194210.2| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|186513264|ref|NP_001119046.1| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|332659557|gb|AEE84957.1| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|332659558|gb|AEE84958.1| AAA-type ATPase family protein [Arabidopsis thaliana]
Length = 857
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 200/536 (37%), Positives = 307/536 (57%), Gaps = 65/536 (12%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
++L+QK+ P++F +LVGQ +V + L + ++R ++ +Y+F+GP GTGKTS ++IFA ALN
Sbjct: 239 RSLSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALN 298
Query: 469 CQS-LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP--SQY 525
C S +PCG C+ C S+ G+ R++ E G + S L L S PP S++
Sbjct: 299 CLSQAAHSRPCGLCSECKSYFSGRGRDVMETDS-GKLNRPSYLRSLIKSA-SLPPVSSRF 356
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++F+ D+C L ++W + +D + VFILV+S L+ LP ++SR QK+ F K+ D
Sbjct: 357 KVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQKYHFSKVCD 416
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
ADI L I +EGI+ D+ A+ IAS+SDGSLRDAE+ L+QLSLLG+RI+ L +L+
Sbjct: 417 ADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQLSLLGKRITTSLAYKLI 476
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G++SD++L+DLLDLA+S+DT NTV R +M + ++P+ L+SQLA VI DI+AG+ +
Sbjct: 477 GVVSDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQLANVIMDIIAGNSQESS 536
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVL 765
R +F R S+EEM+KLR ALK LS+AEK LR S ++ TWLT ALLQL
Sbjct: 537 SATRLRFLTRHT-SEEEMQKLRNALKILSDAEKHLRASKNQTTWLTVALLQL-------- 587
Query: 766 PSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSGDFID 825
S++ +SF+ + GR K E+S+ +G P GD I
Sbjct: 588 -SNTDSSSFA------TDENGRNQINKD---VELSSTSSGCP-------------GDVIK 624
Query: 826 GNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKE 885
+ KG Q++ N +E +W V + ++ K
Sbjct: 625 SDAEKG---------------QER------------NCNETVESVWKTVTDLCCSDSLKR 657
Query: 886 FLYREGKLISVSFGAAPTV-QLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEI 940
FL++ G+L S++ + +L F + ++AEK I +F+SVLG + I++
Sbjct: 658 FLWKRGRLTSLTVDKGVAIAELEFYTPQHVARAEKSWKLIADSFQSVLGCNVEIQM 713
>gi|4220511|emb|CAA22984.1| DNA polymerase III like protein [Arabidopsis thaliana]
gi|7269330|emb|CAB79389.1| DNA polymerase III like protein [Arabidopsis thaliana]
Length = 815
Score = 313 bits (803), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 200/536 (37%), Positives = 307/536 (57%), Gaps = 65/536 (12%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
++L+QK+ P++F +LVGQ +V + L + ++R ++ +Y+F+GP GTGKTS ++IFA ALN
Sbjct: 239 RSLSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALN 298
Query: 469 CQS-LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP--SQY 525
C S +PCG C+ C S+ G+ R++ E G + S L L S PP S++
Sbjct: 299 CLSQAAHSRPCGLCSECKSYFSGRGRDVMETDS-GKLNRPSYLRSLIKSA-SLPPVSSRF 356
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++F+ D+C L ++W + +D + VFILV+S L+ LP ++SR QK+ F K+ D
Sbjct: 357 KVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQKYHFSKVCD 416
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
ADI L I +EGI+ D+ A+ IAS+SDGSLRDAE+ L+QLSLLG+RI+ L +L+
Sbjct: 417 ADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQLSLLGKRITTSLAYKLI 476
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G++SD++L+DLLDLA+S+DT NTV R +M + ++P+ L+SQLA VI DI+AG+ +
Sbjct: 477 GVVSDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQLANVIMDIIAGNSQESS 536
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVL 765
R +F R S+EEM+KLR ALK LS+AEK LR S ++ TWLT ALLQL
Sbjct: 537 SATRLRFLTRHT-SEEEMQKLRNALKILSDAEKHLRASKNQTTWLTVALLQL-------- 587
Query: 766 PSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSGDFID 825
S++ +SF+ + GR K E+S+ +G P GD I
Sbjct: 588 -SNTDSSSFA------TDENGRNQINKD---VELSSTSSGCP-------------GDVIK 624
Query: 826 GNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKE 885
+ KG Q++ N +E +W V + ++ K
Sbjct: 625 SDAEKG---------------QER------------NCNETVESVWKTVTDLCCSDSLKR 657
Query: 886 FLYREGKLISVSFGAAPTV-QLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEI 940
FL++ G+L S++ + +L F + ++AEK I +F+SVLG + I++
Sbjct: 658 FLWKRGRLTSLTVDKGVAIAELEFYTPQHVARAEKSWKLIADSFQSVLGCNVEIQM 713
>gi|297733651|emb|CBI14898.3| unnamed protein product [Vitis vinifera]
Length = 875
Score = 310 bits (794), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 205/534 (38%), Positives = 301/534 (56%), Gaps = 61/534 (11%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
++L+QK+ P+ F +LVGQN+VA++L A+ R ++ Y+F+GP GTGKTS +RIFA ALN
Sbjct: 153 RSLSQKFRPKAFNELVGQNVVARSLLGAISRGRITSFYLFHGPRGTGKTSASRIFAAALN 212
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
C SLE+ +PCG C C+ G+SR+ KE+ V + L+ + + S++++F
Sbjct: 213 CLSLEEHRPCGLCRECVLFFSGRSRDSKEIDTVRINQTGRMRSLIKHAIGRPVSSRFKVF 272
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+C L ++W+ + +D P+ VVFI+++ SLD LP +SR Q++ FPK+KDADI
Sbjct: 273 IIDECHLLRGETWATVLNSLDDLPQHVVFIMITPSLDKLPRSAVSRSQRYHFPKIKDADI 332
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLI 648
L I +E +E D+ AL IA++S+GSLRDAEM L+QLSLLG+RI++ + EL+G++
Sbjct: 333 ASKLGRICVEECLEFDQVALDFIAAKSNGSLRDAEMMLDQLSLLGKRITMSMTYELIGIV 392
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH 708
SD++L+DLLDLALS+DT NTV+ R +M + ++P+ L+SQLA +I DILAG
Sbjct: 393 SDDELLDLLDLALSSDTSNTVRRARELMRSRIDPMQLISQLANLIMDILAGKCQEGTSEV 452
Query: 709 RRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSS 768
RR FF S+ +++KL ALK LSE EKQLR S ++ TWLT ALLQL S
Sbjct: 453 RRNFFEGHT-SEVDLQKLSHALKILSETEKQLRASKNQTTWLTVALLQL----------S 501
Query: 769 SADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNV-RLENFHAENSGDFIDGN 827
S ++SF L+ R R R E NV RL +N+ I
Sbjct: 502 SVESSF------LDANDSRAFLRTEHPRGE----------NVKRLVTCACDNNKPHIC-- 543
Query: 828 MRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFL 887
V + + +E +W + Q++ K FL
Sbjct: 544 ------------------------------EVQEDCKGQLEFLWKQATEICQSSSLKNFL 573
Query: 888 YREGKLISVSFGAAPTV-QLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEI 940
++GKL SV V +L F+ SKAEK I + +S+LG + I I
Sbjct: 574 RKQGKLSSVIVSQGMAVAELEFQHPDYVSKAEKSWKLIASSLQSILGCNVEIRI 627
>gi|358348981|ref|XP_003638519.1| DNA polymerase III subunit gamma/tau [Medicago truncatula]
gi|355504454|gb|AES85657.1| DNA polymerase III subunit gamma/tau [Medicago truncatula]
Length = 903
Score = 310 bits (793), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 198/555 (35%), Positives = 311/555 (56%), Gaps = 66/555 (11%)
Query: 396 GQQNLGDNRNGRHQNL------TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFY 449
G +N+ DN NL + K+ P +F DLVGQ++V ++L A+ R++ Y+F+
Sbjct: 246 GHRNVRDNGGESSPNLETPRMLSMKFRPLSFDDLVGQDMVVRSLLAALSSRRITSFYLFH 305
Query: 450 GPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESI 509
GP GTGKTS ++IFA ALNC S ++ +PCG C C+ G+S+++KEV V + +
Sbjct: 306 GPRGTGKTSASKIFACALNCISNKKQRPCGLCRECVLFFSGRSKDVKEVDSVRINHTDQV 365
Query: 510 LDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPH 569
L+ N T S++++F+ D+C L+P++W+ +S D + VF+++++ LD LP
Sbjct: 366 KSLVKNACTPPVSSRFKVFIIDECQLLNPETWACLSNNQDNISQHAVFVMITTDLDKLPQ 425
Query: 570 IIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL 629
+SR QK++FPK++DA+I L+ I ++EG++ ++ AL LIA+RS GS+RDAE+ L+QL
Sbjct: 426 SAVSRAQKYYFPKVQDANIACKLEKICTEEGLDFEQAALDLIAARSCGSVRDAEIMLDQL 485
Query: 630 SLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689
SLLG++I + LV EL G++SD++L+DLLDLALS DT NTV R +M + ++PL L+SQL
Sbjct: 486 SLLGKKIKISLVYELTGIVSDDELLDLLDLALSPDTSNTVIRARELMRSRIDPLQLVSQL 545
Query: 690 ATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTW 749
+I DILAG+++ D R K+ R SK ++ KL AL+ +EAEKQLR+S ++ TW
Sbjct: 546 VNLIMDILAGNHENGGDEVRSKYSSRYT-SKADLRKLSHALRIFTEAEKQLRISKNQSTW 604
Query: 750 LTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMN 809
T ALLQL+ PS+ AD G + + G +
Sbjct: 605 FTVALLQLSSAD---YPSTDAD----------------------GNKLSLGGACNGDELG 639
Query: 810 VRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEE 869
+E+F A G + + R + ++ H G+ ++
Sbjct: 640 KNMEHFDA---GSCENKSFRL---VAQEDHEGT------------------------LDA 669
Query: 870 IWLEVLNRIQNNGTKEFLYREGKLISV----SFGAAPTVQLTFRSHLTKSKAEKFKDQIL 925
IW + Q++ K FL R+GKL S+ S + V+L F SKAEK I
Sbjct: 670 IWYKATGICQSSKLKTFLRRKGKLSSLLVDQSTSSLAIVELEFGRRHHVSKAEKSWKLIA 729
Query: 926 QAFESVLGSPLTIEI 940
+ + +LG + + I
Sbjct: 730 SSLQCLLGCNIELRI 744
>gi|356563163|ref|XP_003549834.1| PREDICTED: uncharacterized protein LOC100808544 [Glycine max]
Length = 976
Score = 310 bits (793), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 202/559 (36%), Positives = 307/559 (54%), Gaps = 60/559 (10%)
Query: 397 QQNLGDNRNGRH------------QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGL 444
+ +L +RN RH ++L+ K+ P++F DLVG N++ ++L A+ ++
Sbjct: 267 ETDLNGHRNMRHIGGEISPTLETPRSLSMKFRPKSFSDLVGHNVIGKSLLGAISTGRISS 326
Query: 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNF 504
Y+F+GP GTGKTS +RIFA ALNC S + KPCG C C+ G+S+++KE+ +
Sbjct: 327 FYLFHGPRGTGKTSASRIFAAALNCLSPLEQKPCGLCRECVLFFLGRSKHVKEIDSLRIN 386
Query: 505 DFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564
+ + L+ N R S +++F+ D+C L ++W+ + ++ VVF++++ L
Sbjct: 387 RADKVKSLVKNACIPRVSSCFKVFIVDECQLLHAETWACLLNSLENVSPHVVFVMITPDL 446
Query: 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEM 624
D LP +SR Q++ F K+KD DI L+ I +EG+E ++ AL IA+RS GSLRDAE
Sbjct: 447 DKLPPSALSRAQRYHFAKIKDVDIAIRLEKICVEEGLESEQVALDFIAARSCGSLRDAET 506
Query: 625 TLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLA 684
L+QLSLLG++I++ LV EL G+ISD++L+DLLDLALS DT NTV R ++ T ++PL
Sbjct: 507 MLDQLSLLGKKITISLVHELTGVISDDELLDLLDLALSTDTSNTVIRARELVRTRIDPLQ 566
Query: 685 LMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSN 744
L+SQLA +I DILAG ++ D R+F R S+ +++KL +AL+ LSE EKQLR+S
Sbjct: 567 LISQLANLIMDILAGKFEL-GDSEIRRFCNRYT-SEADLQKLSRALRILSETEKQLRISK 624
Query: 745 DKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKET 804
++ TW TAALLQL+ + SSADT+ + R + + G+ S K
Sbjct: 625 NQTTWFTAALLQLSS-----VEYSSADTNDT-------KLCARSASNRDGDICSTSPK-- 670
Query: 805 GVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSR 864
GD ++ G D+ G G V + R
Sbjct: 671 ----------------GDSLEHLATTGQCDDKSDTLGLG---------------VREDHR 699
Query: 865 NGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTV-QLTFRSHLTKSKAEKFKDQ 923
++ IW + Q+N K FL ++GKL SV V +L F S+AEK
Sbjct: 700 RTLDSIWYKATEMCQSNRLKTFLRKQGKLSSVCISQGRAVAELEFHHRDYVSRAEKSWRL 759
Query: 924 ILQAFESVLGSPLTIEIRC 942
I + + +LG L + I C
Sbjct: 760 IASSLQFILGCNLELRINC 778
>gi|356518927|ref|XP_003528127.1| PREDICTED: uncharacterized protein LOC100812040 [Glycine max]
Length = 979
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 199/538 (36%), Positives = 311/538 (57%), Gaps = 59/538 (10%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
++L+ K+ P++F DLVGQN+V ++L A+ R ++ Y+FYGP GTGKTS +R+FA ALN
Sbjct: 298 RSLSMKFRPKSFSDLVGQNVVVRSLLAAISRGRITSFYLFYGPRGTGKTSTSRMFAAALN 357
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP--SQYR 526
C S+ + +PCG C C+ G+++++KEV V E + L+ N S PP S+++
Sbjct: 358 CLSVVEKRPCGLCRECVLLFSGRNKDVKEVDSVTINRAEQVKSLIKN--ASIPPVSSRFK 415
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+F+ D+C L+ ++W++IS ++ + VVF++++ LD LP +SR Q++ FPK+KDA
Sbjct: 416 VFIIDECQLLNGETWASISNSLENLSQHVVFVMITPDLDKLPRSAVSRAQRYHFPKVKDA 475
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVG 646
DI+ L+ I ++EG++ ++DAL I ++S GS+RDAEM L+Q+SLLG++I++ L EL G
Sbjct: 476 DIVCRLEKICAEEGLDFEQDALDFIGAKSCGSVRDAEMMLDQMSLLGKKINISLAYELTG 535
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++SD++L+DLLDLALS+DT NTV R +M + ++PL L+SQLA +I DILAG +
Sbjct: 536 IVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLHLVSQLANLIMDILAGKCENGGS 595
Query: 707 RHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP-DQQYVL 765
R +F RR S+ +++KL ALK LSE EKQLR S ++ TW ALLQL+ D Q V
Sbjct: 596 DVRSRFSRRHN-SEADLQKLNNALKILSETEKQLRNSKNQTTWFIVALLQLSSVDCQSV- 653
Query: 766 PSSSADTSFSHS--PLDLENAGGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSGDF 823
+ DT+F +S +D++N T G+R E + TG+ N
Sbjct: 654 --DANDTNFLYSLNNMDIKNVDICN-TLSTGQRLE--HVTTGLCDN-------------- 694
Query: 824 IDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGT 883
K L+ + H G+ ++ IW + ++
Sbjct: 695 ------KSYRLEPEDHKGT------------------------LDSIWYKATEMCHSSQL 724
Query: 884 KEFLYREGKLISVSF-GAAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEI 940
K F +GKL S+ G+ +L F SKAEK I + + +LG + + I
Sbjct: 725 KTFFRNKGKLSSLHVDGSLAIAELEFHHRHHVSKAEKSWKAIASSLQFILGCNIELRI 782
>gi|356513662|ref|XP_003525530.1| PREDICTED: uncharacterized protein LOC100786687 [Glycine max]
Length = 976
Score = 302 bits (774), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 201/533 (37%), Positives = 300/533 (56%), Gaps = 47/533 (8%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
++L+ K+ P++F DLVGQN++ ++L A+ ++ Y+F+GP GTGKTS +RIFA A+N
Sbjct: 291 RSLSMKFRPKSFSDLVGQNVIGKSLLGAISTGRISSFYIFHGPRGTGKTSASRIFAAAMN 350
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
C S + KPCG C C+ G+S+N+KEV + + + L+ + S +++F
Sbjct: 351 CLSPLEQKPCGLCRECVLFFLGRSKNVKEVDSLRINRADKVKSLVKSACIPPASSSFKVF 410
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+C L ++W+ + ++ RVVF++++ LD LP +SR Q++ F K+KDADI
Sbjct: 411 IVDECQVLHGETWACLLNCLENVSPRVVFVMITPDLDKLPRSAVSRAQRYHFAKIKDADI 470
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLI 648
L+ I +EG+E ++ AL IA+RS GSLRDAE L+QLSLLG++I++ LV EL G+I
Sbjct: 471 ARRLKKICVEEGLESEQVALDFIAARSCGSLRDAETMLDQLSLLGKKITISLVHELTGVI 530
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH 708
SD++L+DLLDLALS+DT NTV R ++ T ++PL L+SQLA +I DILAG +
Sbjct: 531 SDDELLDLLDLALSSDTSNTVIRARKLVRTRIDPLQLISQLANLIMDILAGKCELGASET 590
Query: 709 RRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSS 768
R +F R S+ +M+KL AL+ LSE EKQLR+S ++ TW TAALLQL
Sbjct: 591 RTRFCNRYT-SEADMQKLSHALRILSETEKQLRISKNQTTWFTAALLQL----------- 638
Query: 769 SADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNM 828
+S +S +D +A K RA +SN + GD I
Sbjct: 639 ---SSVEYSSVDTNDA-------KLCARA-VSNGD-----------------GD-ICSTP 669
Query: 829 RKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLY 888
KG SL+ TG Q G V + + ++ IW + Q++ K FL
Sbjct: 670 PKGDSLEHLATTG-----QCDDKPYTLGLGVQEDHKGTLDSIWYKATEMCQSSRLKTFLR 724
Query: 889 REGKLISVSFGAAPTV-QLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEI 940
++GKL SV V +L F S+AEK I + + +LG L + I
Sbjct: 725 KQGKLSSVCISQGRAVAELEFHHRDYVSRAEKSWKLIASSLQFILGCNLELRI 777
>gi|297803640|ref|XP_002869704.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315540|gb|EFH45963.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 818
Score = 300 bits (767), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 202/538 (37%), Positives = 309/538 (57%), Gaps = 69/538 (12%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
++L+QK+ P++F +LVGQ +V + L + ++R ++ +Y+F+GP GTGKTS ++IFA ALN
Sbjct: 242 RSLSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALN 301
Query: 469 CQS-LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESIL-DLLDNMVTSRPP--SQ 524
C S +PCG C+ C S+ G+ R++ E G + S L L+ N S PP S+
Sbjct: 302 CLSQAAHSRPCGLCSECKSYFSGRGRDVMETDS-GKLNRPSYLRSLIKN--ASLPPVTSR 358
Query: 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMK 584
+++F+ D+C L ++W + +D + VFILV+S L+ LP ++SR QK+ F K+
Sbjct: 359 FKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQKYHFSKVC 418
Query: 585 DADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQEL 644
DADI L I +EGI+ D+ A+ IAS+SDGSLRDAE+ L+QLSLLG+RI+ L +L
Sbjct: 419 DADISTKLAKICVEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQLSLLGKRITTSLAYKL 478
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT 704
+G++SD++L+DLLDLALS+DT NTV R +M + ++P+ L+SQLA VI DI+AG+ +
Sbjct: 479 IGVVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANVIMDIIAGNSQES 538
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYV 764
R +F R S+EEM+KLR ALK LS+AEK LR S ++ TWLT ALLQL
Sbjct: 539 SSATRLRFLTRHT-SEEEMQKLRNALKILSDAEKHLRASKNQTTWLTVALLQL------- 590
Query: 765 LPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSGDFI 824
S++ +SF+ + GR K E+S+ + P GD I
Sbjct: 591 --SNTDSSSFA------TDENGRNQISKD---VELSSTSSDCP-------------GDVI 626
Query: 825 DGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTK 884
K + +R++ N + +E +W V + ++ K
Sbjct: 627 -----KSETEERQKK----------------------NCKETVETVWKTVTDLCCSDSLK 659
Query: 885 EFLYREGKLISVSFGAAPTV-QLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIR 941
FL++ G+L S++ + +L F + ++AEK I +F+SVLG +EIR
Sbjct: 660 RFLWKRGRLTSLTVDKGVAIAELEFYTPQHVARAEKSWKLIADSFQSVLG--CNVEIR 715
>gi|224133772|ref|XP_002321657.1| predicted protein [Populus trichocarpa]
gi|222868653|gb|EEF05784.1| predicted protein [Populus trichocarpa]
Length = 907
Score = 296 bits (757), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 169/392 (43%), Positives = 261/392 (66%), Gaps = 10/392 (2%)
Query: 389 ASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVF 448
+E G+++ N ++L+QK+ P++F +LVGQ +VA++L A+ R ++ LY+F
Sbjct: 229 VAETSPCGKRSWKHATNETPRSLSQKFRPKSFDELVGQGVVARSLLGAISRGRITSLYLF 288
Query: 449 YGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFES 508
+GP GTGKTS ++IFA ALNC S E+ KPCG C C G+S+++KEV V
Sbjct: 289 HGPRGTGKTSASKIFAAALNCLSHEENKPCGLCRECYVFFSGRSQDVKEVDSVRINQTRR 348
Query: 509 ILDLLDNMVTSRPP--SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566
I L+ + S PP S++++F+ D+C L ++W+ + ++ VVF++++ LD
Sbjct: 349 IRSLIKD--ASMPPISSRFKVFIVDECHLLHGETWAIVLNSLENLSENVVFVMITPELDM 406
Query: 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626
LP ++R QK+ FPK+K+ADI L+ I +E ++ D+ AL IA++S GSLRDAE+ L
Sbjct: 407 LPKSAVTRSQKYHFPKIKEADIAGRLRNICVEEALDFDQVALDFIATKSSGSLRDAEIML 466
Query: 627 EQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALM 686
+QLSLLG+RI++ +V EL+G++SD++L+ LLDLALS+DT +TV R +M + ++P+ L+
Sbjct: 467 DQLSLLGKRITMTMVHELIGVVSDDELLGLLDLALSSDTSSTVIRARELMRSRIDPMQLV 526
Query: 687 SQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDK 746
SQLA +I D+LAG RRKF R+ S+ +M++L ALK LSE+EKQLRMS ++
Sbjct: 527 SQLANLIMDVLAGKCKDDSSEVRRKFSRKHS-SEGDMQRLSHALKILSESEKQLRMSRNQ 585
Query: 747 LTWLTAALLQLAPDQQYVLPSSSADTSFSHSP 778
TWLTAALLQL+ L +S+ D + S++P
Sbjct: 586 STWLTAALLQLSS-----LEASAVDVNDSNTP 612
>gi|147856456|emb|CAN80768.1| hypothetical protein VITISV_013865 [Vitis vinifera]
Length = 785
Score = 292 bits (748), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 182/460 (39%), Positives = 258/460 (56%), Gaps = 29/460 (6%)
Query: 277 RNGCGIPWNWSR---IHHRGKTFLDMAGRSLTSCGLSDSRIRKA-----GGASHSRNVPD 328
R GCGIP WSR HRG S S LSD+ RK G +
Sbjct: 300 RQGCGIPCYWSRRSTPRHRGIC----GSGSCDSPSLSDTIRRKGSSMLCGSQTIYPRRHG 355
Query: 329 MPLVSDRSSSSTNSGAEALPLLV---EASGSQSTEHAGWVHDYSGELGIFADHLLKHAVD 385
+PL S + S + + LPLL + G S + S G L
Sbjct: 356 LPLGSKKRRSVSMTPQGLLPLLTNSCDGHGGSSMGTGRSDDELSTNFGELDLEALSRLDG 415
Query: 386 SDLASEGRS----------GGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSN 435
+S RS G ++ G N R +L+QKY P F +L+GQN+V Q+L N
Sbjct: 416 RRWSSSCRSQEAMELVALNGEREEEGSPENVR--SLSQKYRPMFFDELIGQNIVVQSLVN 473
Query: 436 AVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNI 495
A+ R ++ +Y+F GP GTGKTS ARIF ALNC ++ + KPCG C C GKSR+
Sbjct: 474 AISRGRIAPVYLFQGPRGTGKTSTARIFTAALNCLAVGETKPCGICRECSDFISGKSRHF 533
Query: 496 KEVGPVGNFDFESILDLLDNMV--TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPR 553
+E+ + + LL M T P S Y++FV D+C L +W A K ++ P
Sbjct: 534 REIDGTNKKGMDRMRYLLKTMPFGTPSPLSPYKVFVIDECHLLPSKTWLAFLKFLEEPPP 593
Query: 554 RVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIAS 613
+VVFI ++ L+ +P ++SRCQK+ F K+K+ DI+ L+ I+ E ++++ DAL+LIA
Sbjct: 594 QVVFIFITPDLENVPRTVLSRCQKYLFNKIKEGDIVARLRKISDDENLDVESDALELIAL 653
Query: 614 RSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLR 673
+DGSLRDAE L+QLSLLG+RI+ LV +LVG++SDEKL++LL+LA+S+DT TVK R
Sbjct: 654 NADGSLRDAETMLDQLSLLGKRITTSLVNDLVGVVSDEKLLELLELAMSSDTAETVKRAR 713
Query: 674 VIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFF 713
+M++GV+P+ LMSQLA++I DI+AG+Y + FF
Sbjct: 714 ELMDSGVDPIVLMSQLASLIMDIIAGTYHIVDAQQSDSFF 753
>gi|356507313|ref|XP_003522412.1| PREDICTED: uncharacterized protein LOC100819111 [Glycine max]
Length = 952
Score = 283 bits (723), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 159/352 (45%), Positives = 244/352 (69%), Gaps = 5/352 (1%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
++L+ K+ P++F DLVGQN+V ++L A+ R ++ Y+FYGP GTGKTS +R+FA ALN
Sbjct: 298 RSLSMKFRPKSFSDLVGQNVVVRSLLGAISRGRITSFYLFYGPRGTGKTSASRMFAAALN 357
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP--SQYR 526
C S+ + +PCG C C+ G+S+++KEV V + + L+ N S PP S+++
Sbjct: 358 CLSVVEQRPCGLCRECVLLFSGRSKDVKEVDSVRINRADQVKSLIKN--ASIPPVSSRFK 415
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+F D+C L+ ++W++IS ++ + VVF++++ LD LP +SR Q++ FPK+KDA
Sbjct: 416 VFFIDECQLLNGETWASISNSLENLSQYVVFVMITPDLDKLPPSAVSRAQRYHFPKVKDA 475
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVG 646
DI+ L+ I ++EG+E ++DAL IA++S GS+RDAEM L+Q+SLLG++I++ L EL G
Sbjct: 476 DIVCRLEKICAEEGLEFEQDALDFIAAKSCGSVRDAEMMLDQMSLLGKKINISLAYELTG 535
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++SD++L+DLLDLALS+DT NTV R +M + ++PL L+SQLA +I DILAG +
Sbjct: 536 IVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCE-NGG 594
Query: 707 RHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R F R+ S+ +++KL ALK LS+ EK LR S ++ TW T ALLQL+
Sbjct: 595 SEVRSRFSRRYSSEADLQKLNNALKVLSDTEKHLRFSKNQTTWFTVALLQLS 646
>gi|52354497|gb|AAU44569.1| hypothetical protein AT5G45720 [Arabidopsis thaliana]
Length = 412
Score = 281 bits (720), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 140/157 (89%), Positives = 153/157 (97%), Gaps = 1/157 (0%)
Query: 624 MTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPL 683
MTLEQLSLLG RISVPLVQE+VGLISDEKLVDLLDLALSADTVNTVKNLR+IMETG+EPL
Sbjct: 1 MTLEQLSLLGTRISVPLVQEMVGLISDEKLVDLLDLALSADTVNTVKNLRIIMETGLEPL 60
Query: 684 ALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMS 743
ALMSQLATVITDILAGSYDFTKD+ +RKFFRRQPLSKE+MEKL+QALKTLSE+EKQLR+S
Sbjct: 61 ALMSQLATVITDILAGSYDFTKDQCKRKFFRRQPLSKEDMEKLKQALKTLSESEKQLRVS 120
Query: 744 NDKLTWLTAALLQLAPDQQYVLP-SSSADTSFSHSPL 779
NDKLTWLTAALLQLAPD+QY+LP SSSAD SF+H+PL
Sbjct: 121 NDKLTWLTAALLQLAPDKQYLLPHSSSADASFNHTPL 157
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 126/294 (42%), Positives = 163/294 (55%), Gaps = 65/294 (22%)
Query: 860 SGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEK 919
S +R +E+IWL V+ ++ NG +EFLY+EGK+ S+S G+AP VQL F S + KS AE
Sbjct: 180 SCKNRPSVEDIWLAVIENVRVNGLREFLYKEGKIFSISIGSAPMVQLMFNSPIAKSTAEN 239
Query: 920 FKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVIDSESIIGNR 979
F++ IL+AF E+++G+
Sbjct: 240 FEEHILKAF--------------------------------------------EAVLGS- 254
Query: 980 GPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPASPRETKDHAENRAD 1039
P+ + R + + +S Q E GR+EIVEV S E+
Sbjct: 255 -----PVTLEMRTESKKDLGFSSLQGLSNGERFRESGRSEIVEVVDS--------ESPMT 301
Query: 1040 YSKRASLSERKKLGEQSQCQSIVRSKVSLAHVIQQAEGCTQRNGWSKRKAVSIAEKLEQE 1099
+R L E + Q+Q QSIVR KVSLA VI+QAEG N WSK KAV IA KLEQE
Sbjct: 302 RVRRKHL-EASQNQNQNQNQSIVRGKVSLAQVIKQAEG----NSWSKHKAVEIANKLEQE 356
Query: 1100 NLRLEPRSRSLLCWKASKVTRRKICRLKIRRRKPL--SLLKLVSCGKCLSSKSP 1151
NL+LEPRSRSL+CWKAS+ TRRK+ RLK+R RK SLLKLVSCGKCLS++SP
Sbjct: 357 NLKLEPRSRSLICWKASRSTRRKLSRLKVRTRKLRLHSLLKLVSCGKCLSTRSP 410
>gi|242085200|ref|XP_002443025.1| hypothetical protein SORBIDRAFT_08g006520 [Sorghum bicolor]
gi|241943718|gb|EES16863.1| hypothetical protein SORBIDRAFT_08g006520 [Sorghum bicolor]
Length = 1074
Score = 275 bits (704), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 184/558 (32%), Positives = 270/558 (48%), Gaps = 89/558 (15%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
++L+QKY PR F ++VGQN+ AQ+LSNA+ R ++ Y+F GP GTGKTS ARIF+ ALN
Sbjct: 409 RSLSQKYRPRAFPEIVGQNIAAQSLSNAIARERIAPAYLFQGPRGTGKTSTARIFSAALN 468
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
C + KPCG CN C GK N+KEV I LL+N+ S P S+Y++F
Sbjct: 469 CLTTGDNKPCGVCNQCTDFFSGKGTNLKEVDASNRKSISIIKHLLENLPPSAPLSRYKVF 528
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
V D+C WSA K +D RVVFI ++ D LP ++SRCQK+ F K+KD D
Sbjct: 529 VVDECHMTPSKLWSAFMKFLDEPFPRVVFIFITIDPDNLPRAVVSRCQKYVFSKIKDIDT 588
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLI 648
+ L+ I KE ++++ AL LIA SDGSLRDAE L+QLSLLG++I+ LV +L
Sbjct: 589 VCRLRKICVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDL---- 644
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK-DR 707
LA +I DI+AG+Y
Sbjct: 645 ----------------------------------------LAGLIMDIIAGTYKLADVAC 664
Query: 708 HRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPS 767
+ L++ E+E+L+QALK LS+AEKQ+R+S+++ TW TAALLQL +
Sbjct: 665 CNGSAVGGRSLTEAELERLQQALKILSDAEKQIRLSSERPTWFTAALLQLGCGHSSDMNQ 724
Query: 768 SSADTSFSHSPLDLENAGGRGMTRKGGERA-------------EISNKETGVPMNVRLEN 814
T H L N + R+ RA I K V + ++
Sbjct: 725 QKCSTQEHHK---LTNDAMSEIARESSSRAVSHSLSAFGISKRTIDTKTVSVHSSPQVIA 781
Query: 815 FHAEN---SGDFIDGNMRKGISLDR--------KRHTGSGMALQQKSPLSAGGRHVSGNS 863
H+ + + + G R S+DR + MAL V+G S
Sbjct: 782 SHSSQLRLNDNLVYGECR---SVDRLPLNFNQLNDNCSQQMAL------------VNGIS 826
Query: 864 RNGIEEIWLEVLNRIQNNGTKEFLYREGKLISV-SFGAAPTVQLTFRSHLTKSKAEKFKD 922
+ + ++W+ + + ++ L GKL+S+ + F KS+A++F
Sbjct: 827 -DSLAQVWIRCIENCHSKTLQQLLIDHGKLVSIRQLEGHAIAFIAFEDCSIKSRAQRFLS 885
Query: 923 QILQAFESVLGSPLTIEI 940
I + E+VL + ++I
Sbjct: 886 SITNSIETVLKCNVEVKI 903
>gi|413921404|gb|AFW61336.1| hypothetical protein ZEAMMB73_064194 [Zea mays]
Length = 816
Score = 270 bits (691), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 152/403 (37%), Positives = 244/403 (60%), Gaps = 3/403 (0%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
++L QKY PR+F +LVG ++AQ+LS AV++ K+ +Y+F+GPHG GKTS AR FA ALN
Sbjct: 167 RSLLQKYRPRSFSELVGHGVIAQSLSGAVLKGKLAPIYLFHGPHGVGKTSTARTFAAALN 226
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFES-ILDLLDNMVTSRPPSQYRI 527
C+S + +PCG C+ C+ G S ++ E+ D +S + LL N S +++
Sbjct: 227 CRSPGENQPCGRCDECMPIFSGSSSSVVEID-ASKLDCKSRVAALLRNACEVLASSHFKV 285
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
+ DDC + + W +I ++ P +F++++S ++ LP I CQ + F K+ DA+
Sbjct: 286 LIVDDCQHMDKEGWYSIYNSLEGIPESTIFVMITSDIEKLPSNSIGWCQSYRFCKIDDAE 345
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGL 647
I L I +KEG+E + +AL L+A +++GS+RDA L+QL+LLG+RIS + EL+G
Sbjct: 346 IARRLIKICTKEGMEFEAEALDLLARKANGSIRDAIQMLDQLTLLGKRISKSVTHELIGD 405
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR 707
+SD++L+DLL+LA+S+D V+ R ++ + V+PL L++QLA I DILAG + +
Sbjct: 406 VSDDELLDLLNLAMSSDAATIVRRARELLSSKVDPLQLLAQLANHIMDILAGKHP-SDSS 464
Query: 708 HRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPS 767
R+ + + ++ KLR AL+ LSE EKQL+ + ++ TWLTAALLQ + Y L
Sbjct: 465 EVRRVTGKHTSADVDVHKLRNALEILSETEKQLKTTKNQSTWLTAALLQFNMREPYCLDD 524
Query: 768 SSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNV 810
++ + F+ S D A + + NK + + MN+
Sbjct: 525 TAVSSMFTESHTDDGTAALKDESLDTSSHLCSQNKISSLDMNL 567
>gi|242078039|ref|XP_002443788.1| hypothetical protein SORBIDRAFT_07g002080 [Sorghum bicolor]
gi|241940138|gb|EES13283.1| hypothetical protein SORBIDRAFT_07g002080 [Sorghum bicolor]
Length = 802
Score = 259 bits (661), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 151/394 (38%), Positives = 241/394 (61%), Gaps = 3/394 (0%)
Query: 388 LASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYV 447
L +G G++ ++L QKY P++F +LVG ++AQ+LS AV++ K+ +Y+
Sbjct: 136 LVGDGEELGRRGEASTFQESSRSLLQKYRPKSFSELVGHGVIAQSLSGAVLKGKLAPIYL 195
Query: 448 FYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFE 507
F+GPHG GKTS AR FA ALNC+S +PCG C+ C++ G S ++ E+ D +
Sbjct: 196 FHGPHGVGKTSMARTFAAALNCRSPGGNQPCGRCDECVAIFSGSSSSVVEID-ASKLDCK 254
Query: 508 S-ILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566
S + LL N S +++ + DDC + + W +I ++ P +F++++S +D
Sbjct: 255 SRVAALLRNACEVPASSHFKVMIVDDCQHMDKEGWYSIYNSLEGIPESTIFVMITSDIDK 314
Query: 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626
LP I CQ + F K+ DA+I L I +KEG+E + +AL L+A +++GS+RDA L
Sbjct: 315 LPSNSIGWCQSYRFCKIDDAEIARRLIKICTKEGMEFEAEALDLLARKANGSIRDAIQML 374
Query: 627 EQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALM 686
+QL+LLG+RIS + EL+G +SDE+L+DLL+LA+S+D V+ R ++ + V+PL L+
Sbjct: 375 DQLTLLGKRISKSVTHELIGDVSDEELLDLLNLAMSSDAATIVRRARELLSSKVDPLQLL 434
Query: 687 SQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDK 746
+QLA +I DILAG + + R+ + + ++ KLR AL+ LSE EKQL+ + ++
Sbjct: 435 AQLANLIMDILAGKHP-SDSSEVRRVNGKHTSADVDVHKLRNALEILSETEKQLKTTKNQ 493
Query: 747 LTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLD 780
TWLTAALLQ + Y L ++ + F+ S D
Sbjct: 494 STWLTAALLQFNMREPYCLDDTAVSSMFTESQTD 527
>gi|115474561|ref|NP_001060877.1| Os08g0120200 [Oryza sativa Japonica Group]
gi|42407584|dbj|BAD10815.1| putative DNA polymerase III like protein [Oryza sativa Japonica
Group]
gi|42407921|dbj|BAD09061.1| putative DNA polymerase III like protein [Oryza sativa Japonica
Group]
gi|113622846|dbj|BAF22791.1| Os08g0120200 [Oryza sativa Japonica Group]
gi|222639822|gb|EEE67954.1| hypothetical protein OsJ_25853 [Oryza sativa Japonica Group]
Length = 799
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 153/396 (38%), Positives = 243/396 (61%), Gaps = 4/396 (1%)
Query: 386 SDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLL 445
S L EG G++ G ++L QKY P+ F +L GQN+VAQ+LS+AV++ K+ +
Sbjct: 127 SSLMIEGEQLGRRE-GATFQESARSLLQKYRPKAFSELAGQNVVAQSLSSAVLKGKLAPI 185
Query: 446 YVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFD 505
Y+F+GPHG GKTS ARIFA +LNC S +PCG C C++ G S ++ E+ D
Sbjct: 186 YLFHGPHGIGKTSAARIFAASLNCHSSGGNQPCGHCEECMAIFSGNSSSVIEID-ASKLD 244
Query: 506 FES-ILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564
+S + LL N S +++ + DDC + + W ++ ++ P +F++++S +
Sbjct: 245 CKSRVAALLRNACEVPASSHFKVLIVDDCQHMDKEGWYSVYSSLEGIPDSSIFVMITSDI 304
Query: 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEM 624
D LP + CQ + F K+ +A+I L I EG+E + +AL+LIA +++GS+RDA
Sbjct: 305 DKLPSNSVGWCQSYRFCKVDEAEIALRLSRICINEGMEFEAEALELIARKANGSIRDAVQ 364
Query: 625 TLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLA 684
L+QL+LLG+RIS + +L+G +SDE+L+DLL+LA S+D V+ R ++ + V+PL
Sbjct: 365 MLDQLTLLGKRISKSVTYDLIGDVSDEELLDLLNLAFSSDAATIVRRARELLSSKVDPLQ 424
Query: 685 LMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSN 744
L++QLA +I DILAG + + + RK + ++ ++ KLR AL+ LSE EKQL+ +
Sbjct: 425 LLAQLANLIMDILAGRHQ-SDSQEVRKVTGKHTSAEIDVHKLRNALEILSETEKQLKTTK 483
Query: 745 DKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLD 780
++ TWLTAALLQ + Y L ++ + F+ S D
Sbjct: 484 NQSTWLTAALLQFNMREPYCLDDAAVSSMFTESQTD 519
>gi|218200402|gb|EEC82829.1| hypothetical protein OsI_27632 [Oryza sativa Indica Group]
Length = 811
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 153/396 (38%), Positives = 243/396 (61%), Gaps = 4/396 (1%)
Query: 386 SDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLL 445
S L EG G++ G ++L QKY P+ F +L GQN+VAQ+LS+AV++ K+ +
Sbjct: 139 SSLMIEGEQLGRRE-GATFQESARSLLQKYRPKAFSELAGQNVVAQSLSSAVLKGKLAPI 197
Query: 446 YVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFD 505
Y+F+GPHG GKTS ARIFA +LNC S +PCG C C++ G S ++ E+ D
Sbjct: 198 YLFHGPHGIGKTSAARIFAASLNCHSSGGNQPCGHCEECMAIFSGNSSSVIEID-ASKLD 256
Query: 506 FES-ILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564
+S + LL N S +++ + DDC + + W ++ ++ P +F++++S +
Sbjct: 257 CKSRVAALLRNACEVPASSHFKVLIVDDCQHMDKEGWYSVYSSLEGIPDSSIFVMITSDI 316
Query: 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEM 624
D LP + CQ + F K+ +A+I L I EG+E + +AL+LIA +++GS+RDA
Sbjct: 317 DKLPSNSVGWCQSYRFCKVDEAEIALRLSRICINEGMEFEAEALELIARKANGSIRDAVQ 376
Query: 625 TLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLA 684
L+QL+LLG+RIS + +L+G +SDE+L+DLL+LA S+D V+ R ++ + V+PL
Sbjct: 377 MLDQLTLLGKRISKSVTYDLIGDVSDEELLDLLNLAFSSDAATIVRRARELLSSKVDPLQ 436
Query: 685 LMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSN 744
L++QLA +I DILAG + + + RK + ++ ++ KLR AL+ LSE EKQL+ +
Sbjct: 437 LLAQLANLIMDILAGRHQ-SDSQEVRKVTGKHTSAEIDVHKLRNALEILSETEKQLKTTK 495
Query: 745 DKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLD 780
++ TWLTAALLQ + Y L ++ + F+ S D
Sbjct: 496 NQSTWLTAALLQFNMREPYCLDDAAVSSMFTESQTD 531
>gi|357139536|ref|XP_003571337.1| PREDICTED: uncharacterized protein LOC100827993 [Brachypodium
distachyon]
Length = 807
Score = 249 bits (636), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 175/541 (32%), Positives = 285/541 (52%), Gaps = 52/541 (9%)
Query: 402 DNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCAR 461
D+ ++L QKY PR F +L GQN VAQ+LS+AV + K+ +Y+F+GPHG GKTS AR
Sbjct: 135 DSHESGARSLLQKYRPRFFSELAGQNAVAQSLSSAVSQGKLAPIYLFHGPHGIGKTSAAR 194
Query: 462 IFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFES-ILDLLDNMVTSR 520
IFA LNC S +PCG C+ C++ G S ++ E+ D ++ + LL +
Sbjct: 195 IFAATLNCHSPGGNQPCGNCDECVAIFSGISSSVVEID-ASKLDCKARVAALLRSACEVP 253
Query: 521 PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFF 580
S +++ + DDC + + W +I ++ P +F++++S +D LP CQ + F
Sbjct: 254 ASSNFKVLIVDDCQHMDKEGWYSIYSSLEGIPDSSIFVMITSDVDKLPSNSAGWCQSYRF 313
Query: 581 PKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPL 640
K+ DA+I+ L I +KEG+E + +AL+L+A ++ GS+RDA L+QL+LLG+RIS +
Sbjct: 314 CKVDDAEIVRRLSKICTKEGMEFEAEALELLARKASGSIRDAVQMLDQLTLLGKRISRSV 373
Query: 641 VQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS 700
+L+G +SDE+L+DLL+L++S+D V+ R ++ + V+PL L++QLA +I DILAG
Sbjct: 374 TYDLIGDVSDEELLDLLNLSMSSDAATIVRRARELLSSKVDPLQLLAQLANLIMDILAGK 433
Query: 701 YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760
+ + RK + + ++ +LR AL+ LSE EKQL+ + ++ TWLTAALLQ
Sbjct: 434 HQ-SDSSEVRKVIGKNTSADVDVHRLRNALEILSETEKQLKTTKNQSTWLTAALLQFNMR 492
Query: 761 QQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVRLENFHAENS 820
+ Y L + DT+ S + E+
Sbjct: 493 EPYCLETLD-DTAVS--------------------------------------SMFTESQ 513
Query: 821 GDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQN 880
D DG G+ D T S + Q K G ++ + +E IW++ L +
Sbjct: 514 TD--DG---AGVLKDESLETSSHLCYQNK----MGCLDMNLGDPDVLETIWMKALENCTS 564
Query: 881 NGTKEFLYREGKLISV-SFGAAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIE 939
N L ++GKL S+ + +L F +E F ++ + +++L + I
Sbjct: 565 NSLHNLLQKDGKLSSLYTTQGVAVAELQFCHPEDVPTSETFWMPLVGSLQNLLKCNVDIR 624
Query: 940 I 940
I
Sbjct: 625 I 625
>gi|167999753|ref|XP_001752581.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696112|gb|EDQ82452.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 366
Score = 242 bits (617), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/265 (48%), Positives = 182/265 (68%), Gaps = 5/265 (1%)
Query: 516 MVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRC 575
M + +P ++Y++ + + CD L+ D W+A +++ P+ VVF+L ++ + +P SRC
Sbjct: 1 MGSLKPHARYKVIIVEGCDLLNTDIWNAFLTLLEEPPKDVVFVLNTTDAERIPATATSRC 60
Query: 576 QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR 635
QKF F K+ +ADI+ L+++A KEG+ ++ AL LIA+RSDGSLRDA + L+Q+ LL +
Sbjct: 61 QKFHFSKVSEADIVKRLEYLAEKEGLHVEAGALSLIAARSDGSLRDAVILLDQVCLLDKN 120
Query: 636 ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD 695
+SV LV+E+ GL K +DLLD ALSADT+NTVK LR ++ + VEPL L+SQL +ITD
Sbjct: 121 VSVDLVREVGGLPPVNKNLDLLDFALSADTINTVKTLREVLASSVEPLRLVSQLGGLITD 180
Query: 696 ILAGSYDFTKDRHRRK---FFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTA 752
ILAGS + DR RK FF R +K E +LRQALK LSEAE QLR + DK TWLTA
Sbjct: 181 ILAGSLEV--DRGSRKDGSFFNRNFSAKVEQHRLRQALKVLSEAELQLRGAGDKATWLTA 238
Query: 753 ALLQLAPDQQYVLPSSSADTSFSHS 777
ALLQ APD+ ++ +S D + + +
Sbjct: 239 ALLQFAPDRSFLPSEASTDVALTSA 263
>gi|302762260|ref|XP_002964552.1| hypothetical protein SELMODRAFT_2945 [Selaginella moellendorffii]
gi|300168281|gb|EFJ34885.1| hypothetical protein SELMODRAFT_2945 [Selaginella moellendorffii]
Length = 220
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 155/221 (70%), Gaps = 2/221 (0%)
Query: 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC 469
+L+QKY P+TFRD+VGQN++ QAL NAV R ++ +Y+F+GP GTGKTS A+I A ALNC
Sbjct: 1 SLSQKYRPKTFRDIVGQNMLVQALGNAVTRGRIAPVYLFHGPRGTGKTSAAKILAAALNC 60
Query: 470 QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESIL-DLLDNMVTSRPPSQYRIF 528
S+E +PCG C C+ GKS ++KEV V + D S++ LL + V +Y++F
Sbjct: 61 VSVEDTRPCGVCRECLLLCLGKSGDVKEVD-VASHDSTSLMKKLLMDAVVGPSSGRYKVF 119
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+C TL+ + W+ K ++ P VFIL ++ + LPH +RCQKF FPK+KD+D+
Sbjct: 120 IIDECHTLTAEGWNVFLKCLEEPPEHAVFILTTTDTEQLPHPASTRCQKFHFPKIKDSDV 179
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL 629
+ LQ +A+KE +E++KDAL LIA+RS GSLRDAE TL+QL
Sbjct: 180 VSRLQALAAKENLEVEKDALDLIAARSGGSLRDAETTLDQL 220
>gi|302822922|ref|XP_002993116.1| hypothetical protein SELMODRAFT_2943 [Selaginella moellendorffii]
gi|300139007|gb|EFJ05756.1| hypothetical protein SELMODRAFT_2943 [Selaginella moellendorffii]
Length = 220
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 155/221 (70%), Gaps = 2/221 (0%)
Query: 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC 469
+L+QKY P+TFRD+VGQN++ QAL NAV R ++ +Y+F+GP GTGKTS A+I A ALNC
Sbjct: 1 SLSQKYRPKTFRDIVGQNMLVQALGNAVTRGRIAPVYLFHGPRGTGKTSAAKILAAALNC 60
Query: 470 QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESIL-DLLDNMVTSRPPSQYRIF 528
S+E +PCG C C+ GKS ++KEV V + D S++ LL + V +Y++F
Sbjct: 61 VSVEDTRPCGVCRECLLLCLGKSGDVKEVD-VASHDSTSLMKKLLMDAVVGPSSGRYKVF 119
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+C TL+ + W+ K ++ P VFIL ++ + LPH +RCQKF FPK+KD+D+
Sbjct: 120 IIDECHTLTAEGWNVFLKCLEEPPEHAVFILTTTDTEQLPHPASTRCQKFHFPKIKDSDV 179
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL 629
+ LQ +A+KE +E++KDAL LIA+RS GSLRDAE TL+QL
Sbjct: 180 VSRLQALAAKESLEVEKDALDLIAARSGGSLRDAETTLDQL 220
>gi|159904325|ref|YP_001551669.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9211]
gi|159889501|gb|ABX09715.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9211]
Length = 578
Score = 222 bits (566), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 183/289 (63%), Gaps = 2/289 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L KY P++F DLVGQ ++A L A++ ++ Y+F GP GTGKTS ARI AR+LNC
Sbjct: 8 LHNKYRPQSFDDLVGQKVIASTLKQALLTNRIAPAYLFCGPRGTGKTSSARILARSLNCL 67
Query: 471 SLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
++E+P PC CN C + G + ++ E+ N ++I DL++ + ++++I+
Sbjct: 68 NVEEPTINPCCQCNLCQTISAGNALDVIEIDAASNTGVDNIRDLIEKSKFAPVIARWKIY 127
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
V D+C LS +++A+ K ++ P RVVFIL ++ L IISRCQ+F F +++ D+
Sbjct: 128 VIDECHMLSAAAFNALLKTLEEPPSRVVFILATTDPQRLLPTIISRCQRFDFSQIELNDL 187
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLI 648
I LQ IA+KE I I+K+A+ L+A RS G LRDA+ L+QLSLL Q I+V V +L+G +
Sbjct: 188 INHLQEIANKEEIGIEKEAINLVARRSQGGLRDAQSMLDQLSLLPQPITVNAVLDLLGEV 247
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
S+EKL+DL D +N + R ++ G +P+ ++ LA+++ D++
Sbjct: 248 SEEKLLDLAMALTKKDPLNLLLICRELINNGKDPMGILQGLASILRDLV 296
>gi|334118530|ref|ZP_08492619.1| DNA polymerase III, subunits gamma and tau [Microcoleus vaginatus
FGP-2]
gi|333459537|gb|EGK88150.1| DNA polymerase III, subunits gamma and tau [Microcoleus vaginatus
FGP-2]
Length = 685
Score = 221 bits (564), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 162/546 (29%), Positives = 265/546 (48%), Gaps = 56/546 (10%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF +LVGQ +AQ L++A+++ ++ Y+F GP GTGKTS ARIFA++L
Sbjct: 3 YEPLHHKYRPQTFAELVGQEAIAQTLTSAILQERIAPAYLFTGPRGTGKTSSARIFAKSL 62
Query: 468 NCQSLE--QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S + P PCG CN C RG + ++ E+ N ++I DL++ S +Y
Sbjct: 63 NCISTDAPTPTPCGKCNVCQEIARGSTLDVIEIDAASNTGVDNIRDLIERAQFSPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+ LS +++A+ K ++ P RVVF+L ++ + IISRCQKF F ++
Sbjct: 123 KVYVIDEVHMLSTQAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQKFDFRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+I L IA E I I DA++++A + G LRDAE L+QLSL ++V V +LV
Sbjct: 183 DAMIAHLHKIAKLENINIASDAVQMVAQIAQGGLRDAESLLDQLSLFQGEVTVEKVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY---- 701
G + + L+DLL + + + R +M+ G EPL ++ LA+ D+L
Sbjct: 243 GAVPENDLMDLLQAIDTDNATALIDMTRHLMDRGREPLIVLQSLASFYRDLLIAKAAPKR 302
Query: 702 -DF----TKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D + + F R K E+E + + K L E Q++ + WL LL
Sbjct: 303 SDLVALTSATWEKLGDFAR----KWEVELILASQKHLQTHEVQIKNTTQPRLWLEVTLLG 358
Query: 757 LAP------DQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNV 810
L P Q P+ + S H P GG ++ E++ +SN + P +
Sbjct: 359 LLPSAIRTQQQPTAEPAKNIAPSQIHPPQPPLAKGGSQIS--NIEQSSVSNSQNHPPQSQ 416
Query: 811 RLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPL-SAGGRHVSGNSRNGIEE 869
+ N T S +P+ SA + + N +E
Sbjct: 417 PVAN------------------------RTESPPPAPITAPVPSAETNQTNYSQANSADE 452
Query: 870 I-----WLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRS--HLTKSKAEKFKD 922
I W +VL R++ +GT+ L + G+L+ + A V+++ + ++ K K ++
Sbjct: 453 IDLNRVWEQVLERVRPHGTQSLLRQHGQLVIFNNNTA-HVKISSQPLLNMVKDKVANIEE 511
Query: 923 QILQAF 928
LQ F
Sbjct: 512 AFLQIF 517
>gi|119493255|ref|ZP_01624095.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
gi|119452728|gb|EAW33906.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
Length = 683
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/382 (34%), Positives = 209/382 (54%), Gaps = 15/382 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ+ +A L+NA+ R ++ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQTFADLVGQDAIATTLTNAIHRGRIVPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S ++P PCG C C G + ++ E+ N ++I +L++ + +Y
Sbjct: 63 NCLSTDEPTATPCGTCAVCKGITNGSTLDVIEIDAASNTGVDNIRELIERAQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RVVF+L ++ + IISRCQ+F F ++
Sbjct: 123 KVYVIDECHMLSTAAFNALLKTLEEPPERVVFVLATTDPQRVLPTIISRCQRFDFRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ LQ+IA KE I I +A+K++A + G LRDAE L+QLSLL I+V V +LV
Sbjct: 183 EPMVQHLQFIAEKEQIPITLEAIKMVAQIAQGGLRDAESLLDQLSLLAGEINVEQVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G + + L++LL S ++ + + +R ++ G EPL ++ LA D+L T
Sbjct: 243 GAVPERDLLELLKAIASENSTDIIDYIRQLLNRGREPLVVLQNLAEFYRDLLIAK---TA 299
Query: 706 DRHRRKFFRRQPLSKE--------EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ QP +E E++ + A K L E E Q++ + WL LL L
Sbjct: 300 PQRSDLVKLTQPTWEELCQFAHHWEIQTILAAQKYLREGETQIKNTTQPRLWLEIILLGL 359
Query: 758 APDQ-QYVLPSSSADTSFSHSP 778
P +Y P + T+ H P
Sbjct: 360 LPSALRYSAPPAPQPTAL-HQP 380
>gi|108862500|gb|ABA97148.2| expressed protein [Oryza sativa Japonica Group]
Length = 544
Score = 220 bits (560), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 142/387 (36%), Positives = 208/387 (53%), Gaps = 60/387 (15%)
Query: 559 LVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGS 618
+++S +D+LP I+ CQKF FPK+K ADI+Y L+ I +EG+E D D L I+++S+GS
Sbjct: 1 MITSDIDSLPRTSITHCQKFHFPKIKVADIVYRLERICIEEGLEFDHDGLYFISAKSNGS 60
Query: 619 LRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMET 678
LRDAE+ L+QLSLLG++I++ LV ELVG +SD++L++LLDLALS+DT NTV+ R +M +
Sbjct: 61 LRDAEIMLDQLSLLGKKITISLVHELVGSVSDDELIELLDLALSSDTTNTVRRARELMAS 120
Query: 679 GVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEK 738
++PL L+SQLA +I DIL+G + F R L++ ++KLR ALK LSE EK
Sbjct: 121 AIDPLQLVSQLANLIMDILSGRCQSAVTEVSKSFLGRYALAEVGIKKLRHALKILSETEK 180
Query: 739 QLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAE 798
QLR S ++ TW+T ALLQ ++ ++ S+ D+ G T +
Sbjct: 181 QLRTSRNQATWVTVALLQFGTNESNLIAESN----------DMHAHSAIGYTDDWVSKVN 230
Query: 799 ISNKETGVPMNVRLENF-HAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGR 857
S+ NF HA NS KS S R
Sbjct: 231 SSS------------NFCHACNSN---------------------------KSNCSE--R 249
Query: 858 HVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFG---AAPTVQLTFRSHLTK 914
H R +E IW + + Q+ K FL +EG L SV A V + H+
Sbjct: 250 HC---RRLKLENIWRRAIGKCQSRSAKNFLRKEGFLSSVHVTEELAIAEVGFSHPDHI-- 304
Query: 915 SKAEKFKDQILQAFESVLGSPLTIEIR 941
S+AEK + I ++VLG + ++ +
Sbjct: 305 SRAEKMQSLIESTLQNVLGCNVEVKFK 331
>gi|443329784|ref|YP_007378855.1| DNA polymerase III, subunits gamma and tau [Anabaena cylindrica PCC
7122]
gi|428682410|gb|AFZ61174.1| DNA polymerase III, subunits gamma and tau [Anabaena cylindrica PCC
7122]
Length = 437
Score = 219 bits (559), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 126/362 (34%), Positives = 200/362 (55%), Gaps = 13/362 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L KY P++F +LVGQ +A L+NA+ +++ Y+F GP GTGKTS ARIFA++L
Sbjct: 3 YQPLHLKYRPQSFVELVGQRAIATTLTNAITSQRIAPAYLFTGPRGTGKTSSARIFAKSL 62
Query: 468 NCQ--SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NCQ S P PCG CNSC S +G S ++ E+ N E+I ++D S+Y
Sbjct: 63 NCQHGSSPTPTPCGLCNSCTSISKGLSLDVVEIDAASNSGVENIRQIIDRTHIIPVNSRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++FV D+ +LS + A+ K ++ P+ VVFIL ++ + +P IISRCQ+F F ++
Sbjct: 123 KVFVLDEVHSLSSQGFQALLKTLEEPPKNVVFILCTTEIHKVPATIISRCQRFDFKRIGV 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
D+I L I ++E I+I +AL+LIA S G LRD++ L+QLSLL I V E+V
Sbjct: 183 EDMIQHLNQIVNEELIDITPEALRLIAQISSGCLRDSQCLLDQLSLLNITIDQNWVWEMV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD--- 702
G + + +L+ +++ D+ + + +R ++E G EPL ++ L + D+L
Sbjct: 243 GNVPEYELLTMVERIAENDSDSVINIIRNLLEWGKEPLVILQNLTSFYRDMLIAKTSPSS 302
Query: 703 -----FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
T+D ++ Q E + + L + E Q+++S WL +L L
Sbjct: 303 KEMVMLTEDTWQQLC---QITKSWETTTILAGQQHLRQCEVQIKLSTQPQLWLEVGILGL 359
Query: 758 AP 759
P
Sbjct: 360 LP 361
>gi|254414978|ref|ZP_05028741.1| DNA polymerase III, subunits gamma and tau, putative
[Coleofasciculus chthonoplastes PCC 7420]
gi|196178125|gb|EDX73126.1| DNA polymerase III, subunits gamma and tau, putative
[Coleofasciculus chthonoplastes PCC 7420]
Length = 700
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/364 (33%), Positives = 202/364 (55%), Gaps = 15/364 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ +AQ L+NA+ + KV Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQTFADLVGQEAIAQTLTNAIRQEKVAPAYLFCGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + ++P +PCG C+ C + +G + +I E+ N ++I ++++ + +Y
Sbjct: 63 NCLTTDKPTPQPCGTCDVCRTIAQGTALDITEIDAASNTGVDNIREIIERAQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P+ VVF+L ++ + IISRCQ+F F ++
Sbjct: 123 KVYVVDECHMLSSAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
A ++ LQ+IA+KE I I +A+ L+A + G LRDAE L+QLSLL I+V + +LV
Sbjct: 183 AAMVKHLQYIATKESINITTEAITLVAQVAQGGLRDAESLLDQLSLLAGEITVECIWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G + + L+ L + R +M+ G EPL ++ LA D+L
Sbjct: 243 GAVPERDLLALSQAITDNHAQAVLDCCRNLMDRGREPLVVLQNLAGFYRDLLIAK----T 298
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKT---------LSEAEKQLRMSNDKLTWLTAALLQ 756
R+ P + +++ +L Q++ T L +E Q++ + WL LL
Sbjct: 299 APSRQDLVAVTPPTWKQLGELAQSMDTTDILQGQQHLKSSEVQVKNTTQPRLWLEVTLLG 358
Query: 757 LAPD 760
L PD
Sbjct: 359 LLPD 362
>gi|434389958|ref|YP_007125664.1| DNA polymerase III, subunit gamma/tau [Cylindrospermum stagnale PCC
7417]
gi|428262536|gb|AFZ28484.1| DNA polymerase III, subunit gamma/tau [Cylindrospermum stagnale PCC
7417]
Length = 447
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 202/367 (55%), Gaps = 15/367 (4%)
Query: 404 RNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIF 463
+N +Q L KY P++F +LVGQ +A L+NA+ +++ Y+F GP GTGKTS ARI
Sbjct: 12 KNMAYQPLHLKYRPQSFTELVGQRAIATTLTNAITSQRIAPAYLFTGPRGTGKTSSARIL 71
Query: 464 ARALNCQ--SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP 521
A++LNCQ P PCG CNSC +G S ++ E+ N E+I ++D
Sbjct: 72 AKSLNCQHGDFPTPTPCGQCNSCTGISKGLSLDVVEIDAASNSGVENIRQIIDRTHIIPV 131
Query: 522 PSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFP 581
S+Y++FV D+ +LS + A+ K ++ P+ VVFIL ++ + +P IISRCQ+F F
Sbjct: 132 NSRYKVFVLDEVHSLSSQGFQALLKTLEEPPKNVVFILCTTEIHKVPATIISRCQRFDFK 191
Query: 582 KMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLV 641
++ D++ L I ++E I I +AL+L+A S G LRD++ L+QLSLL I V
Sbjct: 192 RIGVEDMVQHLNHIVTEELINITPEALRLVAQISSGCLRDSQCLLDQLSLLNITIDQNWV 251
Query: 642 QELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
E+VG + + KL+ +++ D+ + + +R ++E G EPL ++ L + D+L
Sbjct: 252 WEMVGNVPEYKLLTMVERIAENDSNSIITIIRNLLEWGKEPLVILQNLTSFYRDMLIAKT 311
Query: 702 D--------FTKDRHRRKFFRRQPLSKE-EMEKLRQALKTLSEAEKQLRMSNDKLTWLTA 752
T+D ++ +SK+ E + A + L + E Q+++S WL
Sbjct: 312 SPSSKEMVMLTEDTWQQLC----QISKDWETTTILAAQQHLRQCEVQVKLSTQPQLWLEV 367
Query: 753 ALLQLAP 759
+L L P
Sbjct: 368 GILGLLP 374
>gi|443322915|ref|ZP_21051928.1| DNA polymerase III, subunit gamma/tau [Gloeocapsa sp. PCC 73106]
gi|442787333|gb|ELR97053.1| DNA polymerase III, subunit gamma/tau [Gloeocapsa sp. PCC 73106]
Length = 697
Score = 216 bits (550), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 123/375 (32%), Positives = 208/375 (55%), Gaps = 13/375 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF +LVGQ +A L+NA+ ++ Y+F GP GTGKTS ARI A++L
Sbjct: 12 YEPLHHKYRPQTFAELVGQEAIATTLANAITLARIAPAYLFTGPRGTGKTSSARILAKSL 71
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S QP +PCG C C++ RG + ++ E+ N ++I ++++ S +Y
Sbjct: 72 NCVSGTQPTPQPCGKCEMCMAIARGSALDVIEIDAASNTGVDNIREIIERAQFSPLKYRY 131
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P VVF+L ++ + IISRCQ+F + ++
Sbjct: 132 KVYVIDECHMLSTAAFNALLKTLEEPPPSVVFVLATTDPQKVLPTIISRCQRFDYRRISI 191
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L+ IA +E IEI +A+ L+A ++G LRDA+ L+QLSL I+ + +LV
Sbjct: 192 GAMVTHLEKIAREEKIEISTEAITLVAQLANGGLRDAQSLLDQLSLFSGEITSERIWDLV 251
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD--- 702
G ++ L+DLL + V+ ++ R ++ G+EPL ++ LA+ ++L
Sbjct: 252 GATPEQDLIDLLQAIATGTPVSILQKCRELLNRGLEPLIVLQNLASFYLNLLIAKTGPQQ 311
Query: 703 ----FTKDRHRRKFFRRQP-LSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ +K P S E+ K +Q LK ++E Q++ + WL A LL L
Sbjct: 312 LELVTVTPQTWQKLLELTPQWSVAEILKAQQYLK---QSEIQIKNTTQPYLWLEATLLGL 368
Query: 758 APDQQYVLPSSSADT 772
P + V+PS +T
Sbjct: 369 IPKVEAVIPSIIPET 383
>gi|434397165|ref|YP_007131169.1| DNA polymerase III, subunits gamma and tau [Stanieria cyanosphaera
PCC 7437]
gi|428268262|gb|AFZ34203.1| DNA polymerase III, subunits gamma and tau [Stanieria cyanosphaera
PCC 7437]
Length = 780
Score = 216 bits (549), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 150/500 (30%), Positives = 252/500 (50%), Gaps = 23/500 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+ F DLVGQ+ +A+ L NA+ ++K+ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQRFADLVGQSAIARTLINAINQKKIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S + P +PCG C C + G + ++ E+ N ++I ++++ + +Y
Sbjct: 63 NCLSSDDPTDQPCGKCEVCRAIATGTALDVIEIDAASNTGVDNIREVIERAQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ PR V+F+L ++ + IISRCQ+F + ++
Sbjct: 123 KVYVIDECHMLSTAAFNALLKTLEEPPRNVIFVLATTDPQRVLSTIISRCQRFDYRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+++ L +IA +E I+I +DAL L+A ++G LRDAE L+QLSLL + I+V + +LV
Sbjct: 183 EEMVAHLSYIAREEAIDITEDALTLVAQIANGGLRDAESLLDQLSLLPETITVEKIWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-AGSYDFT 704
G + ++ L+ LL ++ ++ R +++ G EP+ ++ LA ++L A +
Sbjct: 243 GAVPEQDLLSLLQAIRESNPEQILQKCRNLLDRGREPIIVLQNLAGFYLNLLIAKTAAHR 302
Query: 705 KDRHRRKFFRRQPLSKE----EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760
D K Q L +E E+ + + + L E E QL+ + WL LL L
Sbjct: 303 SDLVAVKETTWQKLIQEAKNWEINLILRGQQQLKEGEVQLKHTTQPRLWLEVILLGLLQG 362
Query: 761 QQYVLPSSSADTSFSHSPLDLEN-AGGRGMTRKGGERAEISNKETGVPMNVRLENFHAEN 819
+ PSS +TS + L N +T K + N T +P N ++
Sbjct: 363 SSTLKPSSHDNTSINDHFLPATNVVQSTSVTEKVVVDQKEQNSVTQIPANTKV------- 415
Query: 820 SGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIE---EIWLEVLN 876
+ S T LQ+KS V N N E EIW + +
Sbjct: 416 ----LASQTPPQKSTSVVSTTPENNHLQEKSK-EISTDVVEENQINQTEDSQEIWFKAIQ 470
Query: 877 RIQNNGTKEFLYREGKLISV 896
IQ T+ L ++ LI +
Sbjct: 471 LIQPPTTQALLIQQCYLIKI 490
>gi|300867457|ref|ZP_07112111.1| DNA polymerase III, subunits gamma and tau [Oscillatoria sp. PCC
6506]
gi|300334572|emb|CBN57279.1| DNA polymerase III, subunits gamma and tau [Oscillatoria sp. PCC
6506]
Length = 664
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 133/391 (34%), Positives = 210/391 (53%), Gaps = 20/391 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ +AQ LSNA+ + ++ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQTFADLVGQEAIAQTLSNAIRQDRIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + P PCG C+ C G++ ++ E+ N +SI DL++ + +Y
Sbjct: 63 NCLAGNVPTATPCGKCDVCQGIVEGRTLDVIEIDAASNTGVDSIRDLIERAQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++++ K ++ P RVVF+L ++ + IISRCQ+F F ++
Sbjct: 123 KVYVIDECHMLSVSAFNSLLKTLEEPPDRVVFVLATTDAQRVLPTIISRCQRFDFRRIPV 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L+ IA KE I I DA++++A + G LRDAE L+QLSLL ++V V +LV
Sbjct: 183 VAMTNHLREIAQKENINIAPDAVQMVAQIAQGGLRDAESLLDQLSLLAGEVTVEKVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKN-LRVIMETGVEPLALMSQLATVITDILAGSYDFT 704
G + + L+ LL+ A+++DT TV + +R +M+ G EPL ++ LA D L
Sbjct: 243 GAVPENDLMALLE-AIASDTTETVIDCVRHLMDRGREPLLVLQNLAGFYRDFLIAKT--A 299
Query: 705 KDRHRRKFFRRQPLSK-------EEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
R+ +Q K ++E + + K L +E Q++ + WL LL L
Sbjct: 300 PKRYNLVALTQQTWEKLCDFSKGWDVEMILASQKHLQSSEVQIKNTTQPRLWLEMTLLGL 359
Query: 758 APDQQYVLPSSSADTSFSHSPLDLENAGGRG 788
P P + + E AG RG
Sbjct: 360 LPSALKAQPQGAVERGS-------EGAGERG 383
>gi|147765605|emb|CAN69246.1| hypothetical protein VITISV_010442 [Vitis vinifera]
Length = 1057
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 162/453 (35%), Positives = 240/453 (52%), Gaps = 61/453 (13%)
Query: 490 GKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVD 549
+SR+ KE+ V + L+ + + S++++F+ D+C L ++W+ + +D
Sbjct: 416 ARSRDSKEIDTVRINQTGRMRSLIKHAIGRPVSSRFKVFIIDECHLLRGETWATVLNSLD 475
Query: 550 RAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALK 609
P+ VVFI+++ SLD LP +SR Q++ FPK+KDADI L I +E +E D+ AL
Sbjct: 476 DLPQHVVFIMITPSLDKLPRSAVSRSQRYHFPKIKDADIASKLGRICVEECLEFDQVALD 535
Query: 610 LIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTV 669
IA++S+GSLRDAEM L+QLSLLG+RI++ + EL+G++SD++L+DLLDLALS+DT NTV
Sbjct: 536 FIAAKSNGSLRDAEMMLDQLSLLGKRITMSMTYELIGIVSDDELLDLLDLALSSDTSNTV 595
Query: 670 KNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQA 729
+ R +M + ++P+ L+SQLA +I DILAG R FF S+ +++KL A
Sbjct: 596 RRARELMRSRIDPMQLISQLANLIMDILAGKCQEGTSEVRXNFFEGH-TSEVDLQKLSHA 654
Query: 730 LKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGM 789
LK LSE EKQLR S ++ TWLT ALLQL SS ++SF L+ R
Sbjct: 655 LKILSETEKQLRASKNQTTWLTVALLQL----------SSVESSF------LDANDSRAF 698
Query: 790 TRKGGERAEISNKETGVPMNV-RLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQ 848
R R E NV RL +N+ I
Sbjct: 699 LRTEHPRGE----------NVKRLVTCACDNNKPHIC----------------------- 725
Query: 849 KSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTV-QLT 907
V + + +E +W + Q++ K FL ++GKL SV V +L
Sbjct: 726 ---------EVQEDCKGQLEFLWKQATEICQSSSLKNFLRKQGKLSSVIVSQGMAVAELE 776
Query: 908 FRSHLTKSKAEKFKDQILQAFESVLGSPLTIEI 940
F+ SKAEK I + +S+LG + I I
Sbjct: 777 FQHPDYVSKAEKSWKLIASSLQSILGCNVEIRI 809
>gi|86608779|ref|YP_477541.1| DNA polymerase III subunits gamma and tau [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557321|gb|ABD02278.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 779
Score = 213 bits (543), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 140/392 (35%), Positives = 211/392 (53%), Gaps = 15/392 (3%)
Query: 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFAR 465
G ++ L KY P+ F D+VGQ V Q L+NA+ +V Y+F GP GTGKTS ARI A+
Sbjct: 5 GNYEPLHLKYRPQRFADVVGQGAVVQTLANAIRLGRVAPAYLFCGPRGTGKTSSARILAK 64
Query: 466 ALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
+LNC+ P PC C+ C + G S ++ E+ N ++I +L++ + S+Y
Sbjct: 65 SLNCEQGPTPDPCQACSQCRAITAGASLDVLEIDAASNTGVDNIRELIERAQFAPVNSRY 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RVVF+L ++ + I+SRCQ+F F ++
Sbjct: 125 KVYVIDECHMLSNAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIVSRCQRFDFRRIPL 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
D++ L IA++EGI I +AL+L+A S G LRDAE L+QLSLL I+ V +LV
Sbjct: 185 DDMVAHLGKIAAQEGIPITPEALQLVAQLSQGGLRDAERLLDQLSLLEGSITPEAVWDLV 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD--- 702
G I +++L+ L+D L+ D + R ++E G EPLAL+ L + D+L
Sbjct: 245 GGIPEQQLLALMDALLAQDVQAVLSQTRQLLERGKEPLALLQNLVALYRDLLLVKTAPQQ 304
Query: 703 ----FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
D +R P + +E L A L + E Q+R S WL AL+ L
Sbjct: 305 RELVAVTDSTWAALQQRAP--RYSVEILLAAQSHLRQCEPQIRQSGQPQLWLEIALVDLL 362
Query: 759 PDQQYVLPSSSADTSFSHSP---LDLENAGGR 787
+ PS A+ S SP LDL A R
Sbjct: 363 ---GQLRPSMVAEDSAERSPFPALDLSPAPQR 391
>gi|428209786|ref|YP_007094139.1| DNA polymerase III subunits gamma and tau [Chroococcidiopsis
thermalis PCC 7203]
gi|428011707|gb|AFY90270.1| DNA polymerase III, subunits gamma and tau [Chroococcidiopsis
thermalis PCC 7203]
Length = 681
Score = 212 bits (540), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 155/556 (27%), Positives = 269/556 (48%), Gaps = 51/556 (9%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ +A L++A+ R+K+ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQTFADLVGQEAIATTLTHAIERQKIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + +P +PCG C C +G + ++ E+ N +++ +L++ + +Y
Sbjct: 63 NCLNSNKPTAQPCGVCVVCQGVAKGATLDVIEIDAASNTGVDNVRELIERAQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++ D+C LS +++A+ K ++ P VVF+L ++ + IISRCQ+F F ++
Sbjct: 123 KVYAIDECHMLSTAAFNALLKTLEEPPAHVVFVLATTDPQRVLPTIISRCQRFDFRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+I L IA+KE I+I +A+ L+AS + G LRDAE L+QLSLL ++V + +LV
Sbjct: 183 DAMIGHLSAIAAKESIDITPEAIHLVASFAQGGLRDAESLLDQLSLLAGVVTVERIWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G +++ L+++L + +R IM+ G EPL L+ LA D+L
Sbjct: 243 GSVAEPDLLEILQAIAQNQPEALLDAVRRIMDRGREPLTLLQNLAGFYRDLLVAK----T 298
Query: 706 DRHRRKFFRRQPLSKE---------EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
+R P + + ++ + + L+++E Q++ + WL +LL
Sbjct: 299 APNRNDLIAVTPATWDALCTQAKVWDISNILVGQQHLAKSEAQIKNTTQPRLWLEVSLLG 358
Query: 757 LAPDQQYVLPSSSADTSFSHSPLDLENAGGRG----------MTRKGGERAEISNKETGV 806
L LPS+S L + AG RG + +
Sbjct: 359 L-------LPSAS---------LREQGAGSRGKRAEGAEGAEGAIRNSTPHPTPQTPHPI 402
Query: 807 PMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSA--GGRHVSGNSR 864
P HA S + N ++ + + + T + + S+ + NS
Sbjct: 403 PERT---THHAPLSNHQLTANNQQPTTNNYQPPTTNQQPTTTSTQESSLPNSEFQTPNSS 459
Query: 865 NGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQI 924
N EE+WL+VL +Q + T+ L + G+LI G A ++ +S + +A+ + I
Sbjct: 460 N--EEVWLQVLACLQPHSTQALLKQMGRLIQFEAGIA---RIGMKSPAWRDRAKAYVPNI 514
Query: 925 LQAFESVLGSPLTIEI 940
AF S G + +++
Sbjct: 515 KAAFLSAFGQEVQVQL 530
>gi|113474658|ref|YP_720719.1| DNA polymerase III subunits gamma and tau [Trichodesmium erythraeum
IMS101]
gi|110165706|gb|ABG50246.1| DNA polymerase III, subunits gamma and tau [Trichodesmium
erythraeum IMS101]
Length = 695
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/366 (33%), Positives = 201/366 (54%), Gaps = 21/366 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ+++AQ L+NA+ +++ Y+F GP GTGKTS AR+ A++L
Sbjct: 3 YEPLHHKYRPQTFADLVGQDVIAQTLTNAIHTKRIAPAYLFTGPRGTGKTSSARVLAKSL 62
Query: 468 NCQSLEQPKP--CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S + P P CG CN C+ +G + ++ E+ N ++I +L++ + +Y
Sbjct: 63 NCLSYDHPTPSPCGTCNVCVGITKGSTLDVIEIDAASNTGVDNIRELIERSQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+ LS +++A+ K ++ P+ VVFIL ++ + IISRCQ+F F ++
Sbjct: 123 KVYVIDEVHMLSVSAFNALLKTLEEPPKGVVFILATTDPQRVLATIISRCQRFDFRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L IA +E I+I +A+++IA + G LRDAE L+QLSLL I+V V +LV
Sbjct: 183 EAMVKHLHHIAIEEKIDITTEAIQMIAQIAQGGLRDAESLLDQLSLLAGEITVERVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G + + L+ L++ + +++ +K R IM+ G EP+ ++ LA D+L T
Sbjct: 243 GAVPERDLMVLVEAIAADNSIKVLKCTRQIMDRGKEPIIVLQNLAGFYRDLLIAKTAPTS 302
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQ------------ALKTLSEAEKQLRMSNDKLTWLTAA 753
L+K EKL Q K L +E Q++ + WL
Sbjct: 303 K-------NLVALTKPTWEKLCQFSQDWDIGTILAGQKHLQTSEVQIKNTTQPRLWLEVT 355
Query: 754 LLQLAP 759
LL L P
Sbjct: 356 LLGLLP 361
>gi|428320532|ref|YP_007118414.1| DNA polymerase III, subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
gi|428244212|gb|AFZ09998.1| DNA polymerase III, subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
Length = 693
Score = 211 bits (538), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 151/545 (27%), Positives = 255/545 (46%), Gaps = 46/545 (8%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF +LVGQ +AQ L++A+++ ++ Y+F GP GTGKTS ARIFA++L
Sbjct: 3 YEPLHHKYRPQTFAELVGQEAIAQTLTSAILQERIAPAYLFTGPRGTGKTSSARIFAKSL 62
Query: 468 NCQSL--EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S P PCG CN C RG + ++ E+ N ++I DL++ S +Y
Sbjct: 63 NCISTVAPTPTPCGKCNVCQEIARGSTLDVIEIDAASNTGVDNIRDLIERAQFSPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+ LS +++A+ K ++ P RVVF+L ++ + IISRCQKF F ++
Sbjct: 123 KVYVIDEVHMLSTQAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQKFDFRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+I L IA E I I DA++++A + G LRDAE L+QLSL ++V V +LV
Sbjct: 183 EAMIAHLHKIAKLENINIASDAVQMVAQIAQGGLRDAESLLDQLSLFQGEVTVEKVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD--- 702
G + + L+DLL + + + R +M+ G EPL ++ LA+ D+L
Sbjct: 243 GAVPENDLMDLLQAIDTDNATALIDMTRHLMDRGREPLIVLQSLASFYRDLLIAKAAPKR 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
+ + F R + E + K L E Q++ + WL LL
Sbjct: 303 SDLVALTSATWEKLATFARH----WDAELILAGQKHLQTHEVQIKNTTQPRLWLEVTLLG 358
Query: 757 LAPDQQYVLPSSSADTSFS-------HSPLDLENAGGRGMTRKGGERAEI----SNKETG 805
L P P ++A+ + + H P G + G + + I + K
Sbjct: 359 LLPSAIRTQPQATAEPAKNVAQPPQHHPPQSRAGTGAPPLQSGGNQTSNIEQPPAAKPQN 418
Query: 806 VPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRN 865
P EN+ ++ ++ + A
Sbjct: 419 PPPTSPPVANRTENTPPAAIPAPVPTAETNQTNYSPTNWA-----------------DEI 461
Query: 866 GIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRS--HLTKSKAEKFKDQ 923
+ +W +VL+R++ +GT+ L + G+L+ S A V+++ + ++ K K ++
Sbjct: 462 DLNRVWEQVLDRVRPHGTQSLLRQHGQLVIFSNNTA-HVKISSQPLLNMVKDKVANIEEA 520
Query: 924 ILQAF 928
+Q F
Sbjct: 521 FVQIF 525
>gi|282901379|ref|ZP_06309304.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii
CS-505]
gi|281193658|gb|EFA68630.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii
CS-505]
Length = 660
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 146/504 (28%), Positives = 241/504 (47%), Gaps = 51/504 (10%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P++F +LVGQ +A L+NA+ K+ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPKSFAELVGQEAIATTLTNAISLVKIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSL--EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC P PCG C++C +G S ++ E+ N ++I +L++ + +Y
Sbjct: 63 NCLQTGHPTPTPCGVCDTCQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P+ VVF+L ++ + IISRCQ+F F +++
Sbjct: 123 KVYVIDECHMLSAAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIQL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L IA E I I +DA+ L+A S G LRDAE L+QL+LL +S V +LV
Sbjct: 183 EAMVKHLSKIAYNENIPISQDAITLVAQISQGGLRDAESLLDQLALLPGEVSPEQVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G +S++ L LL D+ + + R I++ G EPL ++ L D+L
Sbjct: 243 GSVSEKDLFALLQAIAQNDSEKVLDHTRNILDRGREPLIILQNLGAFYRDLLIA------ 296
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKTLSE---------------AEKQLRMSNDKLTWL 750
+ RQ L E +Q + +E AE QL+ + WL
Sbjct: 297 ----KTASSRQDLVSCTQETWQQLVSFAAELDITFILHGQQQLRTAEVQLKSTTQPRLWL 352
Query: 751 TAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNV 810
LL + P Q S A +S S P ++N G VP +
Sbjct: 353 EVTLLGMLPITQS---SMVAPSSPSVHPATIQNQNGINY---------------NVPPSP 394
Query: 811 RLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEI 870
+ H + + + + + SL S L+Q + S+ + +S + + +I
Sbjct: 395 IYKQAHQQATPNLVSSSS----SLPTHNPQHSPNYLEQAT--SSSSEAIPPSSEHDLNQI 448
Query: 871 WLEVLNRIQNNGTKEFLYREGKLI 894
W +VL +Q +E L + +L+
Sbjct: 449 WYQVLGNLQPASRREMLRQMSQLL 472
>gi|284928754|ref|YP_003421276.1| DNA polymerase III subunit gamma/tau [cyanobacterium UCYN-A]
gi|284809213|gb|ADB94918.1| DNA polymerase III, subunit gamma/tau [cyanobacterium UCYN-A]
Length = 726
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 155/562 (27%), Positives = 290/562 (51%), Gaps = 41/562 (7%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L QKY P+TF LVGQ + LSNA+ +++ Y+F GP GTGKTS ARIFA+++
Sbjct: 4 YEPLYQKYRPQTFDGLVGQKSIVLTLSNAIRSQRISHAYLFTGPRGTGKTSTARIFAKSI 63
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + + P PCG C +C + ++G S ++ E+ N ++I ++++ + +Y
Sbjct: 64 NCLASDAPSISPCGNCEACQTINKGSSLDVIEIDAASNTGVDNIREIIEQAKFAPMQLRY 123
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+I++ D+C LS +++A+ K+++ P+ V+FIL ++ + IISRCQ+F + ++
Sbjct: 124 KIYIVDECHMLSTAAFNALLKILEEPPKHVIFILATTDPQRVLPTIISRCQRFDYRRIAI 183
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+I+ L IA +E I I+ DAL L+A S+G LRDAE L+QLSL +I+ V +LV
Sbjct: 184 EEIVQHLGKIAKEENINIEIDALNLVAKISNGGLRDAESLLDQLSLFTGKINSEKVNDLV 243
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD--- 702
GLIS+ L+ LL S ++ ++ ++ G EPL ++ +A ++L
Sbjct: 244 GLISERDLLSLLQAIRSNNSKLIIEFCGQLINKGKEPLTILQNIANFHLNLLISKVSPQC 303
Query: 703 -----FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+KD + + + + K +Q L+ +E QL+ + W+ LL L
Sbjct: 304 PELTMISKDIWKELCIEAEFWKTDRILKNQQKLRN---SEIQLKSTTQPYLWIEIILLDL 360
Query: 758 APDQ-QYVLPSSSADTSF---SHSPLDLENAGGRGMTRKGGER-AEISNKETGVPMNVRL 812
++ ++ + S++ D + S+ L +++ T+ + E SN + + + R+
Sbjct: 361 LQEEKEFSIDSNNLDIAAKFSSNKKLVIDDPKIEDQTKGNIKNLVENSNNKKLITDDSRI 420
Query: 813 ENFHAENSGDFIDG-NMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIW 871
E+ N + ++ N +K I+ D + + ++ S+ + N+ +E W
Sbjct: 421 EDQTKGNIENLVENSNNKKLITDDSRIEDQTKGNIENLVESSSKSSVSTSNA--DLEGTW 478
Query: 872 LEVLNR--------IQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQ 923
++ I+ +G + +G+ +V ++P ++LT +S L+ +
Sbjct: 479 NLIIQNLPPFLAGLIKEHGC--LVSHKGRTATVGMSSSPLLELT-KSKLS---------E 526
Query: 924 ILQAFESVLGSPLTIEIRCESK 945
I AFE V+G +TI ++ E+K
Sbjct: 527 IELAFEKVIGHKVTISLKVETK 548
>gi|282895316|ref|ZP_06303518.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
gi|281199622|gb|EFA74482.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
Length = 663
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 150/502 (29%), Positives = 246/502 (49%), Gaps = 41/502 (8%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P++F +LVGQ +A L+NA+ KV Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPKSFAELVGQEAIATTLTNAISLVKVAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NC--QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC P PCG C+ C +G S ++ E+ N ++I +L++ + +Y
Sbjct: 63 NCLQSGHPTPTPCGVCDICQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P+ VVF+L ++ + IISRCQ+F F +++
Sbjct: 123 KVYVIDECHMLSTAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIQL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L IA E I I +DA+ L+A S G LRDAE L+QL+LL +S V +LV
Sbjct: 183 EAMVKHLSKIAHNENIPISQDAITLVAQISQGGLRDAESLLDQLALLPGDVSPEQVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS----- 700
G +S++ L LL D+ N + N R I++ G EPL ++ L D+L
Sbjct: 243 GSVSEKDLFALLQAIAQNDSENVLDNTRKILDRGREPLIILQNLGAFYRDLLIAKTASSR 302
Query: 701 ---YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
T++ ++ L + + +Q L+T AE QL+ + WL LL L
Sbjct: 303 QDLVSCTQETWQQLVNFATELDITFILRGQQQLRT---AEAQLKSTTQPRLWLEVTLLGL 359
Query: 758 APDQQ--YVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVRLENF 815
P Q V PS+ + L L N + + G +S P +V +++
Sbjct: 360 LPITQNSMVAPSNPS--------LHLGN-----IQNQNGTNHNVS------PSHVYRQDY 400
Query: 816 HAENSGDFIDGNMRKGISLDRKRHTGSGMAL---QQKSPLSAGGRHVSGNSRNGIEEIWL 872
N N + + + S AL K+P + + + +S + +IW
Sbjct: 401 QQANPP---TNNSQHSHHYPEQATSSSSEALPNGSDKTP-NITRQEIPSSSEYDLNQIWY 456
Query: 873 EVLNRIQNNGTKEFLYREGKLI 894
+VL +Q +E L + +L+
Sbjct: 457 QVLANLQPASRREMLRQMSQLL 478
>gi|22298675|ref|NP_681922.1| DNA polymerase III subunits gamma and tau [Thermosynechococcus
elongatus BP-1]
gi|22294855|dbj|BAC08684.1| DNA polymerase III gamma and tau subunits [Thermosynechococcus
elongatus BP-1]
Length = 603
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/360 (33%), Positives = 200/360 (55%), Gaps = 13/360 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+ F DLVGQ +A L+ A+++ ++ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQRFSDLVGQGAIATTLTQALLKERIAPAYLFCGPRGTGKTSSARILAKSL 62
Query: 468 NC--QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S P PCG C C G S ++ E+ + ++I +L++ + +Y
Sbjct: 63 NCLRSSKPTPDPCGQCEVCRQVANGTSLDVIEIDAASHTGVDNIRELIEKAQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P +VVFIL ++ + IISRCQ+F F ++
Sbjct: 123 KVYVIDECHMLSVSAFNALLKTLEEPPPQVVFILATTDPQRVLPTIISRCQRFDFRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+++ LQ IA KE I+I+ +AL L+A S G LRDAE L+QLSL +RI+V V +L
Sbjct: 183 GEMVAHLQNIADKEQIDIEPEALTLVAQLSQGGLRDAESLLDQLSLYPERITVEQVWQLT 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS----- 700
G + ++ L LL D V+ +++ R ++E G +PL ++ LA++ D+L
Sbjct: 243 GAVPEQDLRQLLGAIARRDAVSVLEHTRQLLERGRDPLTILQNLASLYRDLLLAKTVPQR 302
Query: 701 ---YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
T + + + S EE+ ++ L+T E Q++ SN WL ++L L
Sbjct: 303 RDLVALTAETWQALIALAEAWSVEEILHAQEHLRT---CEGQIKQSNQPRLWLEISILGL 359
>gi|428313466|ref|YP_007124443.1| DNA polymerase III subunits gamma and tau [Microcoleus sp. PCC
7113]
gi|428255078|gb|AFZ21037.1| DNA polymerase III, subunit gamma/tau [Microcoleus sp. PCC 7113]
Length = 789
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/362 (33%), Positives = 203/362 (56%), Gaps = 17/362 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ +A L+NA++ ++ Y+F GP GTGKTS ARI A++L
Sbjct: 27 YEPLHHKYRPQTFADLVGQEAIATTLTNAILSERIAPAYLFTGPRGTGKTSSARILAKSL 86
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC +QP PCG+C+ C S G + ++ E+ N ++I ++++ + +Y
Sbjct: 87 NCLKQDQPTESPCGYCDVCKSIASGAALDVIEIDAASNTGVDNIREIIERAQFAPVQCRY 146
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P+ VVF+L ++ + IISRCQ+F F ++
Sbjct: 147 KVYVVDECHMLSTAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIPL 206
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L+ I+S+E I+I +AL L+A + G LRDAE L+QLSLL ++++V V +LV
Sbjct: 207 DAMVGHLRHISSQEQIDITPEALTLVAQVAQGGLRDAESLLDQLSLLPEKVAVEHVWDLV 266
Query: 646 GLISDEKLVDLLDLALSADTVNTV-KNLRVIMETGVEPLALMSQLATVITDILAGSYDFT 704
G + + L+ L ALS+D V + R +M+ G EPL ++ LA D+L
Sbjct: 267 GAVPERDLMALTK-ALSSDNSEAVLDHCRRLMDKGREPLIVLQNLAGFYRDLLIAK---- 321
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQAL---------KTLSEAEKQLRMSNDKLTWLTAALL 755
+R P + E++ + ++L + L +E Q++ + WL LL
Sbjct: 322 TAPNRNDLVAVTPPTWEQLREFAKSLDISTILQGQQHLKNSEAQIKNTTQPRLWLEVTLL 381
Query: 756 QL 757
L
Sbjct: 382 GL 383
>gi|168003463|ref|XP_001754432.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694534|gb|EDQ80882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 220
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 146/219 (66%), Gaps = 4/219 (1%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
+ QKY P+ F ++VGQN+V ++LS AV +RK +Y+F GP GTGKTS AR+FA LN
Sbjct: 5 RTFNQKYRPKNFNEIVGQNVVVKSLSTAVAKRKAAPVYMFMGPRGTGKTSAARVFAAGLN 64
Query: 469 CQSLEQPK-PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
C S + + PCG C C + +S +++++ N D S+ L+ + P +QY+I
Sbjct: 65 CLSPDYARRPCGICRECGTIALNRSADVRQIDAASNMDMASMRALMGSFT---PHAQYKI 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
F+ + CD LS D W+A K+++ PR VVFIL+++ + +P ISRCQKF F K+K+ D
Sbjct: 122 FIVEGCDLLSSDIWNAFLKLLEEPPRNVVFILITTHAERIPPTAISRCQKFQFFKLKEPD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626
I+ LQ++A+KE + ++ DAL LIA+RSDGSLRDAE+ L
Sbjct: 182 IVKRLQFLAAKEDLRVEADALALIATRSDGSLRDAEIFL 220
>gi|123969399|ref|YP_001010257.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. AS9601]
gi|123199509|gb|ABM71150.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. AS9601]
Length = 584
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/366 (31%), Positives = 206/366 (56%), Gaps = 15/366 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H+ QKY P +LVGQ ++ L A++ +K+ Y+F GP GTGKTS ARIFA++L
Sbjct: 5 HKPFHQKYRPNNLDELVGQKFISITLKQALLTKKIAPAYLFNGPRGTGKTSSARIFAKSL 64
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NCQ+ +QP PC C+ C G + +I E+ N E+I ++++ + +++
Sbjct: 65 NCQAFDQPTITPCCKCDLCRQITEGSALDIIEIDAASNTGVENIREIIERARFAPTQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS + +A+ K ++ P RVVFIL +++ + + + I SRCQKF F ++
Sbjct: 125 KVYVIDECHMLSTAASNALLKTIEEPPSRVVFILATTNPERVLNTIKSRCQKFDFRRISP 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+DI L I+ KE I+ + ALK+IA RS+G +RDA+ LEQL+LL + I++ +Q L+
Sbjct: 185 SDIFQHLSEISEKESIKYEVQALKMIAKRSNGGMRDAQSLLEQLNLLPEGITINGIQNLL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G +S+ +L +L+ + + + + + ++G EPL ++ L + D+L + T
Sbjct: 245 GEVSESELTNLIKSLVENNPESLIDTCNKLYDSGNEPLQIIIGLLNITRDLLLHT---TN 301
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQAL---------KTLSEAEKQLRMSNDKLTWLTAALLQ 756
+++ ++ ++E++K+ + + L E Q++ S++ WL L
Sbjct: 302 NKYSDLYYTSDEF-RDELDKISKTINKSKIVNWHNNLRNIEYQIKSSDNPRLWLEIHLTG 360
Query: 757 LAPDQQ 762
L Q+
Sbjct: 361 LLDSQE 366
>gi|86605279|ref|YP_474042.1| DNA polymerase III subunits gamma and tau [Synechococcus sp.
JA-3-3Ab]
gi|86553821|gb|ABC98779.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp.
JA-3-3Ab]
Length = 692
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 127/359 (35%), Positives = 195/359 (54%), Gaps = 9/359 (2%)
Query: 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFAR 465
G+++ L KY P+ F ++VGQ V Q L+NA+ +V Y+F GP GTGKTS ARI A+
Sbjct: 5 GKYEPLHLKYRPQRFAEVVGQGAVVQTLANAIRLGRVAPAYLFCGPRGTGKTSSARILAK 64
Query: 466 ALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
+LNC+ P PC C+ C + G S ++ E+ N ++I +L++ + S+Y
Sbjct: 65 SLNCEQGPTPDPCQVCSQCRAITAGSSLDVIEIDAASNTGVDNIRELIERAQFAPVNSRY 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RVVF+L ++ + I+SRCQ+F F ++
Sbjct: 125 KVYVIDECHMLSNAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIVSRCQRFDFRRIPL 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
D++ L IA++EGI I +AL L+A + G LRDAE L+QLSLL I+ V +LV
Sbjct: 185 DDMVAHLGQIAAQEGIPIAPEALHLVAQLAQGGLRDAERLLDQLSLLEGSITPEAVWDLV 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAG------ 699
G I + +L+DL D L+ D + R ++E G EPL ++ L D+L
Sbjct: 245 GGIPERQLLDLTDALLAQDVQAVLAQTRQLLERGREPLVVLQSLVVFYRDLLLAKTAPQQ 304
Query: 700 -SYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
D +R P + +E L A L + E Q+R S WL ALL L
Sbjct: 305 RQLAAVTDPTWAALQQRAP--RYSVEMLLAAQSHLRQCEPQIRQSGQPQLWLEIALLDL 361
>gi|33241267|ref|NP_876209.1| DNA polymerase III subunit gamma/tau [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
gi|33238797|gb|AAQ00862.1| DNA polymerase III gamma/tau subunit [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 559
Score = 207 bits (526), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 176/292 (60%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L QKY P+ F DLVGQ+ + L A++ ++ Y+F GP GTGKTS ARI AR+L
Sbjct: 5 YQPLHQKYRPKRFDDLVGQDSIVATLKQALISNRIAPAYLFCGPRGTGKTSSARILARSL 64
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NCQ E+P PC CN C +G + +I E+ N ++I +L++ + +++
Sbjct: 65 NCQQSEKPTIAPCCQCNLCKEIGKGTALDIIEIDAASNTGVDNIRELIERSQFAPVQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P + VF+L ++ L I+SRCQ+F F ++
Sbjct: 125 KVYVIDECHMLSTAAFNALLKTLEEPPSQTVFVLATTDPQRLLQTILSRCQRFDFRRIPI 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L IASKE IEID++++ LIA RS+G LRDAE L+QLSLL I++ + EL+
Sbjct: 185 TSLTSHLTTIASKEKIEIDQESINLIAQRSEGGLRDAESLLDQLSLLKPPINLQSIWELL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G + + L+ L +S D ++ +K R + + G EP++++ L + D++
Sbjct: 245 GEVPENDLIILTSSLISQDPISLLKTCRKLFDNGKEPISILQGLTATLRDLV 296
>gi|428217762|ref|YP_007102227.1| DNA polymerase III subunits gamma and tau [Pseudanabaena sp. PCC
7367]
gi|427989544|gb|AFY69799.1| DNA polymerase III, subunits gamma and tau [Pseudanabaena sp. PCC
7367]
Length = 684
Score = 206 bits (524), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 123/386 (31%), Positives = 210/386 (54%), Gaps = 21/386 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF L+GQ +A+ L+NA+ +R++ Y+F G GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQTFAALIGQEAIARTLTNAINQRRIAPAYLFTGSRGTGKTSTARIMAKSL 62
Query: 468 NCQSLE--QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S + P PCG C+ C S +G + ++ E+ N ++I +L++ + ++Y
Sbjct: 63 NCLSYDAPTPTPCGTCDMCQSIAKGIALDVTEIDAASNTGVDNIRELIERSQFAPVQARY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++ D+C LS +++A+ K ++ P VVFIL ++ + IISRCQ+F F ++
Sbjct: 123 KVYAIDECHMLSTAAFNALLKTLEEPPEHVVFILATTDPQRVLSTIISRCQRFDFRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L+ IA E IEI ++AL L+A + G LRDAE L+QLSLL I++ V +LV
Sbjct: 183 DAMVAHLREIADTEQIEITQEALILVAQIAQGGLRDAESLLDQLSLLEGEITIEAVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G + + L+DL+ + ++ ++ +R +M+ G EPL ++ LA + D+L
Sbjct: 243 GSVPERDLLDLIAAIAADNSTQILEKVRQVMDRGREPLIVLQNLAGLYRDLLIAQA--AS 300
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKTLS------------EAEKQLRMSNDKLTWLTAA 753
DRH L+ ++L Q +LS +AE Q++ + WL
Sbjct: 301 DRHDLVA-----LTSYGWDRLNQLAHSLSRAVILKGQQHLRDAEVQIKNTTQPRLWLEVT 355
Query: 754 LLQLAPDQQYVLPSSSADTSFSHSPL 779
LL L P + + + + + +P+
Sbjct: 356 LLGLQPSAFTIATTPVPNPALNIAPV 381
>gi|75908432|ref|YP_322728.1| AAA ATPase [Anabaena variabilis ATCC 29413]
gi|75702157|gb|ABA21833.1| AAA ATPase, central region [Anabaena variabilis ATCC 29413]
Length = 650
Score = 206 bits (523), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 130/380 (34%), Positives = 210/380 (55%), Gaps = 18/380 (4%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L KY P++F +LVGQ +A L+NA+ K+ Y+F GP GTGKTS ARI A++LNC
Sbjct: 6 LHHKYRPKSFAELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 471 SLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
+ ++P +PCG C+ C +G S ++ E+ N ++I +L++ + +Y+++
Sbjct: 66 NSDKPTAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQCRYKVY 125
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
V D+C LS +++A+ K ++ P+ VVF+L ++ + IISRCQ+F F +++ +
Sbjct: 126 VIDECHMLSSAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIQLEAM 185
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLI 648
+ L IASKE I I +A+ L+A S G LRDAE L+QL+LL ++ V +LVG +
Sbjct: 186 VKHLSAIASKENINISLEAVTLVAQLSQGGLRDAESLLDQLALLPNEVTPEQVWDLVGSV 245
Query: 649 SDEKLVDLLDLALSADTVNTV-KNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR 707
S++ L+ LL A++ D V + R I++ G EPL ++ LA D+L +R
Sbjct: 246 SEQDLLVLL-AAIAQDNPELVLDSTRQILDRGREPLTILQNLAAFYRDLLIAKT--APNR 302
Query: 708 HRRKFFRRQPLSKEEMEKLRQAL---------KTLSEAEKQLRMSNDKLTWLTAALLQLA 758
H +Q + + + Q+L K L EAE Q++ + WL LL L
Sbjct: 303 HNLVACTQQ--TWNALVESAQSLPISTILLGQKHLQEAELQIKHTTQPRLWLEVTLLGLL 360
Query: 759 PDQQYVLPSSSADTSFSHSP 778
P + P++ A T +H P
Sbjct: 361 PSAS-IQPAAIALTPSNHRP 379
>gi|17232424|ref|NP_488972.1| DNA polymerase III subunits gamma and tau [Nostoc sp. PCC 7120]
gi|17134070|dbj|BAB76631.1| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120]
Length = 655
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 130/380 (34%), Positives = 209/380 (55%), Gaps = 18/380 (4%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L KY P+ F +LVGQ +A L+NA+ K+ Y+F GP GTGKTS ARI A++LNC
Sbjct: 6 LHHKYRPKNFAELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 471 SLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
+ ++P +PCG C+ C +G S ++ E+ N ++I +L++ + +Y+++
Sbjct: 66 NSDKPTAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQCRYKVY 125
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
V D+C LS +++A+ K ++ PR VVF+L ++ + IISRCQ+F F +++ +
Sbjct: 126 VIDECHMLSSAAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQRFDFRRIQLEAM 185
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLI 648
+ L IASKE I I +A+ L+A S G LRDAE L+QL+LL ++ V +LVG +
Sbjct: 186 VKHLSAIASKENINISLEAVTLVAQLSQGGLRDAESLLDQLALLPNEVTPEQVWDLVGSV 245
Query: 649 SDEKLVDLLDLALSADTVNTV-KNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR 707
S++ L+ LL A++ D V + R I++ G EPL ++ LA D+L +R
Sbjct: 246 SEQDLLVLL-AAIAQDNPELVLDSTRQILDRGREPLTILQNLAAFYRDLLIAKT--APNR 302
Query: 708 HRRKFFRRQPLSKEEMEKLRQAL---------KTLSEAEKQLRMSNDKLTWLTAALLQLA 758
H +Q + + + + Q+L K L EAE Q++ + WL LL L
Sbjct: 303 HNLVACTQQ--TWKALVESAQSLPISTILLGQKHLQEAELQIKHTTQPRLWLEVTLLGLL 360
Query: 759 PDQQYVLPSSSADTSFSHSP 778
P + P++ A T + P
Sbjct: 361 PSAN-IQPAAIALTPSNQRP 379
>gi|78780135|ref|YP_398247.1| DNA polymerase III, tau subunit [Prochlorococcus marinus str. MIT
9312]
gi|78713634|gb|ABB50811.1| DNA polymerase III, tau subunit [Prochlorococcus marinus str. MIT
9312]
Length = 579
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/358 (31%), Positives = 202/358 (56%), Gaps = 15/358 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H+ QKY P +LVGQN ++ L A++ +K+ Y+F GP GTGKTS ARIFA++L
Sbjct: 5 HKPFHQKYRPSNLDELVGQNFISITLKQALLTKKISPAYLFNGPRGTGKTSSARIFAKSL 64
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NCQ+ E+P PCG C+ C G + +I E+ N E+I ++++ + +++
Sbjct: 65 NCQAFEEPTIHPCGKCDLCRQITDGNALDIIEIDAASNTGVENIREIIERARFAPTQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS + +A+ K ++ P RVVFIL +++ + + + I SRCQKF F ++
Sbjct: 125 KVYVIDECHMLSTAASNALLKTIEEPPSRVVFILATTNPERVLNTIQSRCQKFDFRRISP 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+DI L IA KE I+ + AL +IA RS+G +RDA+ LEQL+LL + I++ ++ L+
Sbjct: 185 SDIFQHLSEIAEKESIKYEVQALNIIAKRSNGGMRDAQSLLEQLNLLPEGITINNIKNLL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G +S+ +L +L+ + + + + + + G EP ++ L + D+L + T
Sbjct: 245 GEVSEIELTNLIKSLIENNPESLIITCNKLYDDGNEPYQIIIGLLNITRDLLLHT---TN 301
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKT---------LSEAEKQLRMSNDKLTWLTAAL 754
+++ ++ ++E++K+ + + L E QL+ S++ WL L
Sbjct: 302 NKYSDLYYTSDGF-QDELDKISKTINKSTIINWHNHLRNIEYQLKTSDNPRLWLEIHL 358
>gi|206895302|ref|YP_002246820.1| DNA polymerase III subunit gamma and tau [Coprothermobacter
proteolyticus DSM 5265]
gi|206737919|gb|ACI16997.1| DNA polymerase III, gamma and tau subunit [Coprothermobacter
proteolyticus DSM 5265]
Length = 522
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 182/309 (58%), Gaps = 19/309 (6%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+TF ++VGQ+ V + L+ A+ +K+ Y+F GP G+GKTSCARIFA+ LNC+
Sbjct: 3 LYRKYRPQTFEEVVGQSHVTEILTKALDNQKISHAYLFAGPKGSGKTSCARIFAKGLNCE 62
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP-SQYRIFV 529
+ KPC C SC + G S ++ E+ N + I +L + V RP S+Y++++
Sbjct: 63 TGITSKPCNECESCKLINEGHSLDVIEIDAASNRGVDEIRELRER-VKYRPAQSRYKVYI 121
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ L+ ++++A+ K ++ P VVFIL ++ +P ++SRCQ+F F K+ ++
Sbjct: 122 IDEAHMLTREAFNALLKTLEEPPEYVVFILATTDPQKIPPTVLSRCQRFRFKKLTSDEVF 181
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLI 648
L+ + EG ++AL+LIA SDG++RDA LEQ+S++ + ++S+ + L+ ++
Sbjct: 182 QILENVCKSEGFSYQREALELIAEVSDGAVRDALNLLEQISVVDEGKVSIKTARFLLNVV 241
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH 708
DE ++DLL A AD V+ L +ME+GVEP+ L + +++
Sbjct: 242 EDEVILDLLKTAF-ADMDEAVERLAELMESGVEPMELFRTMKSLV--------------- 285
Query: 709 RRKFFRRQP 717
RR FR +P
Sbjct: 286 RRSVFRNKP 294
>gi|186684248|ref|YP_001867444.1| DNA polymerase III subunits gamma and tau [Nostoc punctiforme PCC
73102]
gi|186466700|gb|ACC82501.1| DNA polymerase III, subunits gamma and tau [Nostoc punctiforme PCC
73102]
Length = 707
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 148/523 (28%), Positives = 252/523 (48%), Gaps = 51/523 (9%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P++F +LVGQ +A L+NA+ K+ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPKSFAELVGQEAIATTLTNAIGTSKIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC ++P +PCG C+ C +G + ++ E+ N ++I +L++ + +Y
Sbjct: 63 NCLKSDRPTAEPCGVCDVCQGITKGYALDVIEIDAASNTGVDNIRELIEKAQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ PR VVF+L ++ + IISRCQ+F F +++
Sbjct: 123 KVYVIDECHMLSTQAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQRFDFRRIQL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L IASKE I I +A+ L+A S G LRDAE L+QL LL ++ V +LV
Sbjct: 183 EAMVKHLSAIASKENIHISPEAVTLVAQLSQGGLRDAESLLDQLGLLAGVVTPDRVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTV-KNLRVIMETGVEPLALMSQLATVITDILAGSYDFT 704
G +S++ L+ LL+ A++ D V + I++ G EPL + LA D+L
Sbjct: 243 GTVSEQDLLGLLN-AIAQDKPEAVLDSTHKILDRGREPLTFLQNLAAFYRDLLIAKT--A 299
Query: 705 KDRHRRKFFRRQPLSK-------EEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+RH +Q + +M + + L +AE Q++ S WL LL L
Sbjct: 300 PNRHDLVACTQQTWTALVEFAQYFDMTMILAGQEHLRKAEVQIKNSTQPRLWLEVTLLGL 359
Query: 758 APDQQY------------VLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETG 805
P V+P + S S+ P +N + + +N +
Sbjct: 360 LPSATTNIQPQAPNIAPRVIPPA---VSPSYPPAVTQNHAVSSLPVAEPQ----TNHNST 412
Query: 806 VPMNVRLENFH---AENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSP----------- 851
+ N H A+N G + + +K H + ++ +P
Sbjct: 413 LRQGSVTTNHHVAIAQNQPVTSSGAVEQ-----QKNHNSAANSVSPPTPEPVAVPVPSAI 467
Query: 852 LSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLI 894
+ A V G ++ + ++W +VL +Q +E L + +LI
Sbjct: 468 VEAVTSEVVGEAQYDLTQVWQQVLANLQPKSRQEMLRQMSQLI 510
>gi|116074345|ref|ZP_01471607.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9916]
gi|116069650|gb|EAU75402.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9916]
Length = 679
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 121/357 (33%), Positives = 201/357 (56%), Gaps = 7/357 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L KY P+ F LVGQN +A L +A+ ++ Y+F GP GTGKTS ARI AR+L
Sbjct: 5 YQPLHHKYRPQRFDQLVGQNAIAATLGHALRSNRIAPAYLFSGPRGTGKTSSARILARSL 64
Query: 468 NCQSLE--QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S + P+PCG C C + G + ++ E+ N ++I DL++ + +++
Sbjct: 65 NCLSSDGPTPEPCGSCELCTTIAAGTALDVIEIDAASNTGVDNIRDLIERSRFAPVQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RVVF+L ++ + I+SRCQ+F F ++
Sbjct: 125 KVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIPL 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L WIA +E I I +A+ ++A R+ G LRDAE L+QLSLL I V +L+
Sbjct: 185 DALEAHLTWIAEQEAIPIQPEAVHVVAQRAQGGLRDAESLLDQLSLLPAPIEADAVWDLL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD--ILAGSYDF 703
G + ++ L+ L + S D + V++ R +++ G +P A++ LA ++ D ++A + D
Sbjct: 245 GAVPEQDLIALAEALASGDPLQLVESSRSLLDRGRDPGAVLQGLAGILRDLVLMAAAPDR 304
Query: 704 TKDRHRRKFFRRQ-PLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ FR Q P + + ++L Q L +E+QLR+S WL L+ L
Sbjct: 305 PELTSVSPQFRDQLPELAKRIGRQRLLQWQARLRGSEQQLRLSVQPRLWLEVLLMGL 361
>gi|440756560|ref|ZP_20935760.1| DNA polymerase III, subunits gamma and tau [Microcystis aeruginosa
TAIHU98]
gi|440172589|gb|ELP52073.1| DNA polymerase III, subunits gamma and tau [Microcystis aeruginosa
TAIHU98]
Length = 654
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 122/364 (33%), Positives = 202/364 (55%), Gaps = 7/364 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ+ +A LSNA++ ++ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQTFADLVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQPKP--CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S + P P CG C+ C + G + ++ E+ N ++I ++++ + +Y
Sbjct: 63 NCLSSDHPTPIPCGKCSVCQAIANGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RV+F+L ++ + IISRCQ+F + ++
Sbjct: 123 KVYVIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIAL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ LQ IA E I+I+ +AL L+A ++G LRDAE L+QLSLL I+ V +LV
Sbjct: 183 DAMVAHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLLDQLSLLAGTITAERVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD-ILAGSYDFT 704
G + + L+ LL + S ++ R +M G EPL ++ LA + +LA +
Sbjct: 243 GAVPERDLLTLLKVIHSNIPDQVIEQCRHLMNRGKEPLIVLQNLAGFYLNLLLAKTAPNR 302
Query: 705 KDRHRRKFFRRQPLSKE----EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760
+ Q L KE +E++ + + L ++E QL+ + WL LL L P
Sbjct: 303 PEMVAVTAPTWQDLCKEARTWSLEEILRGQQLLKDSETQLKNTTQPRLWLEVTLLGLLPQ 362
Query: 761 QQYV 764
Q +
Sbjct: 363 AQVI 366
>gi|126697186|ref|YP_001092072.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9301]
gi|126544229|gb|ABO18471.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9301]
Length = 586
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 115/366 (31%), Positives = 203/366 (55%), Gaps = 15/366 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H+ QKY P +LVGQ ++ L A++ +K+ Y+F GP GTGKTS ARIFA++L
Sbjct: 5 HKPFHQKYRPNNLDELVGQKFISITLKQALLTKKIAPAYLFNGPRGTGKTSSARIFAKSL 64
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NCQ+ +QP PC C+ C G + +I E+ N E+I ++++ + +++
Sbjct: 65 NCQAFDQPTITPCCKCDLCRQITDGSALDIIEIDAASNTGVENIREIIERARFAPTQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS + +A+ K ++ P RVVFIL +++ + + I SRCQKF F ++
Sbjct: 125 KVYVIDECHMLSTAASNALLKTIEEPPSRVVFILATTNPERVLSTIKSRCQKFDFRRISP 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+DI L IA KE I+ + ALK+IA RS+G +RDA+ LEQL+LL + I++ +Q L+
Sbjct: 185 SDIFQHLSEIAEKESIKYEVQALKMIAKRSNGGMRDAQSLLEQLNLLPEGITINNIQNLL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G +S+ +L +L+ + + + + + + G EPL ++ L + D+L + T
Sbjct: 245 GEVSENELTNLIKSLVENNPESLIITCNKLYDAGNEPLQIIIGLLNITRDLLLHT---TN 301
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQAL---------KTLSEAEKQLRMSNDKLTWLTAALLQ 756
+++ ++ ++E+ K+ + + L E Q++ S++ W L
Sbjct: 302 NKYSDLYYTSDEF-QDELNKISKTINKSTIINWHNNLRNIEYQIKSSDNPRLWFEIHLTG 360
Query: 757 LAPDQQ 762
L +Q+
Sbjct: 361 LLGNQE 366
>gi|119513249|ref|ZP_01632292.1| AAA ATPase, central region [Nodularia spumigena CCY9414]
gi|119462090|gb|EAW43084.1| AAA ATPase, central region [Nodularia spumigena CCY9414]
Length = 650
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 195/359 (54%), Gaps = 7/359 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P++F +LVGQ +A L+NA+ K+ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPKSFAELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + +QP +PCG C+ C +G S ++ E+ N ++I +L++ + +Y
Sbjct: 63 NCLNSDQPTAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P+ VVF+L ++ + IISRCQ+F F +++
Sbjct: 123 KVYVVDECHMLSTAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIQL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L IASKE I I DA+ LI + G LRDAE L+QL+L ++ V +LV
Sbjct: 183 EAMVNHLSAIASKENINITSDAVTLIGQIAQGGLRDAESLLDQLALTVGEVTPDKVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY---- 701
G +S++ L+ LL+ + R I+++G EPL ++ LA + D+L
Sbjct: 243 GSVSEQDLIALLNAIAQNRAEGVLDCSRKILDSGREPLIILQNLAALYRDLLIAQTASNR 302
Query: 702 -DFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759
D + + K +M + Q + L AE Q++ + WL LL L P
Sbjct: 303 QDLVTCTQQTWTALVELSQKLDMSTILQGQQHLRTAEVQIKNTTQPRLWLEVTLLGLLP 361
>gi|443328498|ref|ZP_21057095.1| DNA polymerase III, subunit gamma/tau [Xenococcus sp. PCC 7305]
gi|442791952|gb|ELS01442.1| DNA polymerase III, subunit gamma/tau [Xenococcus sp. PCC 7305]
Length = 763
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 119/362 (32%), Positives = 202/362 (55%), Gaps = 7/362 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ +A L NA+ + K+ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQTFGDLVGQEAIANTLVNAIEQEKIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC ++ +P PCG C C + G + ++ E+ N ++I ++++ + S+Y
Sbjct: 63 NCLAVPKPTATPCGQCAVCQAIAVGTALDVIEIDAASNTGVDNIREIIERAKFAPVQSRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++ D+C LS +++A+ K ++ P +VVFIL ++ + IISRCQ+F + ++
Sbjct: 123 KVYAIDECHMLSTAAFNALLKTLEEPPPQVVFILATTDPQRVLSTIISRCQRFDYRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L++IA+ E I I K+A+ L+A ++G LRDAE L+QLSL I++ V +LV
Sbjct: 183 GEMTRHLEYIAATEKIAIAKEAITLVAQIANGGLRDAESLLDQLSLFPDTITIDQVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD-ILAGSYDFT 704
G + ++ L+ LL S + + ++ R +++ G EPL ++ LA+ + ++A +
Sbjct: 243 GAVPEQDLLGLLKSIRSKNLEHILEKCRNLLDRGREPLVVLQNLASFYLNLVIAKTSPQR 302
Query: 705 KDRHRRKFFRRQPLSKE----EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760
D Q L E E+ + Q + L +AE QL+ + WL LL L
Sbjct: 303 NDLVAVTETCWQELQTEAAHWEIALILQGQQQLKDAEVQLKNTTQPRLWLEVTLLGLVST 362
Query: 761 QQ 762
Q+
Sbjct: 363 QE 364
>gi|425450409|ref|ZP_18830237.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa PCC
7941]
gi|389768796|emb|CCI06200.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa PCC
7941]
Length = 654
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 122/364 (33%), Positives = 202/364 (55%), Gaps = 7/364 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ+ +A LSNA++ ++ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQTFADLVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQPKP--CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S + P P CG C+ C + G + ++ E+ N ++I ++++ + +Y
Sbjct: 63 NCLSSDHPTPIPCGKCSVCQAIANGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RV+F+L ++ + IISRCQ+F + ++
Sbjct: 123 KVYVIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIAL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ LQ IA E I+I+ +AL L+A ++G LRDAE L+QLSLL I+ V +LV
Sbjct: 183 DAMVAHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLLDQLSLLAGTITAERVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD-ILAGSYDFT 704
G + + L+ LL + S ++ R +M G EPL ++ LA + +LA +
Sbjct: 243 GAVPERDLLTLLKVIHSNIPDQVIEQCRHLMNRGKEPLIVLQNLAGFYLNLLLAKTAPNR 302
Query: 705 KDRHRRKFFRRQPLSKE----EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760
+ Q L KE +E++ + + L ++E QL+ + WL LL L P
Sbjct: 303 PEMVAVTAPTWQDLCKEARTWSLEEILRGQQLLKDSETQLKNTTQPRLWLEVTLLGLLPQ 362
Query: 761 QQYV 764
Q +
Sbjct: 363 AQVI 366
>gi|425437010|ref|ZP_18817439.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa PCC
9432]
gi|389678112|emb|CCH92995.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa PCC
9432]
Length = 654
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 120/367 (32%), Positives = 199/367 (54%), Gaps = 13/367 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ+ +A LSNA++ ++ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQTFADLVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQPKP--CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S + P P CG C+ C + G + ++ E+ N ++I ++++ + +Y
Sbjct: 63 NCLSSDHPTPIPCGKCSVCHAIANGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RV+F+L ++ + IISRCQ+F + ++
Sbjct: 123 KVYVIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIAL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ LQ IA E I+I+ +AL L+A ++G LRDAE L+QLSLL I+ V +LV
Sbjct: 183 DAMVAHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLLDQLSLLAGTITAERVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G + + L+ LL + S ++ R +M G EPL ++ LA ++L T
Sbjct: 243 GAVPERDLLTLLKVIHSNIPDQVIEQCRHLMNRGKEPLIVLQNLAGFYLNLLLAK---TA 299
Query: 706 DRHRRKFFRRQPLSKE--------EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
P +E +E++ + + L ++E QL+ + WL LL L
Sbjct: 300 PNRPEMVAVTAPTWQELCAEARTWSLEEILRGQQLLKDSETQLKNTTQPRLWLEVTLLGL 359
Query: 758 APDQQYV 764
P Q +
Sbjct: 360 LPQAQVI 366
>gi|254421557|ref|ZP_05035275.1| DNA polymerase III, subunits gamma and tau, putative [Synechococcus
sp. PCC 7335]
gi|196189046|gb|EDX84010.1| DNA polymerase III, subunits gamma and tau, putative [Synechococcus
sp. PCC 7335]
Length = 745
Score = 202 bits (515), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 210/380 (55%), Gaps = 17/380 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF LVGQ+ +AQ L++A+ ++++ Y+F GP GTGKTS ARI A++L
Sbjct: 2 YEPLHHKYRPQTFSQLVGQDAIAQTLTHALEQKRIAPAYLFCGPRGTGKTSSARILAKSL 61
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S E P +PCG C+ C + +G + ++ E+ N ++I +L++ + +Y
Sbjct: 62 NCLSSEVPTAQPCGQCDVCQAVIQGIALDVVEIDAASNTGVDNIRELIERSQFAPVQCRY 121
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+ LS +++A+ K ++ P RVVF+L ++ + IISRCQ+F F ++
Sbjct: 122 KLYVLDEVHMLSTAAFNALLKTLEEPPSRVVFVLATTDPQRVLPTIISRCQRFDFRRIPL 181
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+I L +I+++E I+I+ A++L+A S G LRDAE L+QLSL +I+V V +LV
Sbjct: 182 PSMIKHLSYISAEEAIQIEPSAIQLVAQISQGGLRDAESLLDQLSLQANKITVETVWDLV 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS----- 700
G + + L++L+ + D+ ++ +R +M+ G EPL ++ L D+L
Sbjct: 242 GAVPERDLLNLVRAIAADDSTALLERVRHLMDKGREPLIVLQSLVGFYRDLLIAKRAPKR 301
Query: 701 ---YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
T Q LS + +Q L++ AE Q++ + WL L L
Sbjct: 302 VDLVAITSPTWAEMIPFAQKLSAAALLASQQKLQS---AEVQIKNTTQPRLWLEITLTGL 358
Query: 758 APDQQYVL----PSSSADTS 773
P V+ P+S+A T+
Sbjct: 359 LPSALEVMAKRTPASNAATN 378
>gi|425455862|ref|ZP_18835573.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa PCC
9807]
gi|389803161|emb|CCI17876.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa PCC
9807]
Length = 654
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 122/367 (33%), Positives = 200/367 (54%), Gaps = 13/367 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ+ +A LSNA++ ++ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQTFADLVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQPKP--CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S + P P CG C+ C + G + ++ E+ N ++I ++++ + +Y
Sbjct: 63 NCLSSDHPTPIPCGKCSVCQAIANGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RV+F+L ++ + IISRCQ+F + ++
Sbjct: 123 KVYVIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIAL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ LQ IA E I+I+ +AL L+A ++G LRDAE L+QLSLL I+ V +LV
Sbjct: 183 DAMVVHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLLDQLSLLAGTITAERVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS----- 700
G + + L+ LL + S ++ R +M G EPL ++ LA ++L
Sbjct: 243 GAVPERDLLTLLKVIHSNIPDQVIEQCRHLMNRGKEPLIVLQNLAGFYLNLLLAKTAPNR 302
Query: 701 ---YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
T + + S EE+ + +Q LK ++E QL+ + WL LL L
Sbjct: 303 PEMVAVTAPTWQDLCTEARTWSLEEILRGQQLLK---DSETQLKNTTQPRLWLEVTLLGL 359
Query: 758 APDQQYV 764
P Q +
Sbjct: 360 LPQAQVI 366
>gi|427703526|ref|YP_007046748.1| DNA polymerase III subunits gamma and tau [Cyanobium gracile PCC
6307]
gi|427346694|gb|AFY29407.1| DNA polymerase III, subunit gamma/tau [Cyanobium gracile PCC 6307]
Length = 638
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/281 (36%), Positives = 170/281 (60%), Gaps = 2/281 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+ F LVGQ VA LS A+++ ++ Y+F GP GTGKTS ARI AR+L
Sbjct: 5 YEPLHHKYRPQRFDQLVGQKAVADTLSQALLQNRIAPAYLFSGPRGTGKTSSARILARSL 64
Query: 468 NC--QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC P+PCG C C G + ++ E+ N ++I +L++ + +++
Sbjct: 65 NCLASPAPTPEPCGRCQLCNDIAAGNALDVIEIDAASNTGVDNIRELIERSRFAPVQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RVVF+L ++ + I+SRCQ+F F ++
Sbjct: 125 KVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIPL 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
D++ LQWIA++E I I +A+ L+A RS G LRDAE L+QLSLL + I+ V +L+
Sbjct: 185 EDLVGHLQWIAAEESIGITPEAVHLVAQRSQGGLRDAESLLDQLSLLPEPIAADAVWDLL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALM 686
G + + +L+ L + +AD + V+ R +++ G EP A++
Sbjct: 245 GAVPEVELLQLAEAMAAADPLQVVEGCRELLDRGREPAAVL 285
>gi|443662745|ref|ZP_21133015.1| DNA polymerase III, subunits gamma and tau [Microcystis aeruginosa
DIANCHI905]
gi|159027138|emb|CAO86769.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443332037|gb|ELS46667.1| DNA polymerase III, subunits gamma and tau [Microcystis aeruginosa
DIANCHI905]
Length = 654
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 119/367 (32%), Positives = 198/367 (53%), Gaps = 13/367 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ+ +A LSNA++ ++ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQTFADLVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQPKP--CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S + P P CG C+ C + G + ++ E+ N ++I ++++ + +Y
Sbjct: 63 NCLSSDHPTPIPCGKCSVCQAIANGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RV+F+L ++ + IISRCQ+F + ++
Sbjct: 123 KVYVIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIAL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ LQ IA E I+I+ +AL L+A ++G LRDAE L+QLSLL I+ V +LV
Sbjct: 183 DAMVAHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLLDQLSLLAGTITAERVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G + + L+ LL + ++ R +M G EPL ++ LA ++L T
Sbjct: 243 GAVPERDLLTLLKVIHGNIPDQVIEQCRHLMNRGKEPLIVLQNLAGFYLNLLLAK---TA 299
Query: 706 DRHRRKFFRRQPLSKE--------EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
P +E +E++ + + L ++E QL+ + WL LL L
Sbjct: 300 PNRPEMVAVTAPTWQELCTEARTWSLEEILRGQQLLKDSETQLKNTTQPRLWLEVTLLGL 359
Query: 758 APDQQYV 764
P Q +
Sbjct: 360 LPQAQVI 366
>gi|166368134|ref|YP_001660407.1| DNA polymerase III subunit gamma/tau [Microcystis aeruginosa
NIES-843]
gi|166090507|dbj|BAG05215.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa
NIES-843]
Length = 654
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/367 (32%), Positives = 198/367 (53%), Gaps = 13/367 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ+ +A LSNA++ ++ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQTFADLVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQPKP--CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S + P P CG C+ C + G + ++ E+ N ++I ++++ + +Y
Sbjct: 63 NCLSSDHPTPIPCGKCSVCQAIANGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RV+F+L ++ + IISRCQ+F + ++
Sbjct: 123 KVYVIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIAL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ LQ IA E I+I+ +AL L+A ++G LRDAE L+QLSLL I+ V +LV
Sbjct: 183 DAMVAHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLLDQLSLLAGTITAERVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G + + L+ LL + ++ R +M G EPL ++ LA ++L T
Sbjct: 243 GAVPERDLLTLLKVIHGNIPDQVIEQCRHLMNRGKEPLIVLQNLAGFYLNLLLAK---TA 299
Query: 706 DRHRRKFFRRQPLSKE--------EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
P +E +E++ + + L ++E QL+ + WL LL L
Sbjct: 300 PNRPEMVAVTAPTWQELCTEARTWSLEEILRGQQLLKDSETQLKNTTQPRLWLEVTLLGL 359
Query: 758 APDQQYV 764
P Q +
Sbjct: 360 LPQAQVI 366
>gi|427732172|ref|YP_007078409.1| DNA polymerase III subunits gamma and tau [Nostoc sp. PCC 7524]
gi|427368091|gb|AFY50812.1| DNA polymerase III, subunit gamma/tau [Nostoc sp. PCC 7524]
Length = 647
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 128/383 (33%), Positives = 201/383 (52%), Gaps = 15/383 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+ F ++VGQ +A L+NA+ K+ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPKIFAEVVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC ++P +PCG C+ C +G S ++ E+ N ++I +L++ + +Y
Sbjct: 63 NCLKTDKPTAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ PR VVF+L ++ + IISRCQ+F F +++
Sbjct: 123 KVYVIDECHMLSSAAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQRFDFRRIEL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L IAS E I I A+ L+A S G LRDAE L+QL+LL +S V +LV
Sbjct: 183 EAMARHLSAIASNENIHISPAAITLVAQLSQGGLRDAESLLDQLALLSGEVSPDRVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKN-LRVIMETGVEPLALMSQLATVITDILAGSYDFT 704
G +S+ L+ LL A++ D V + R I++ G EPL ++ LA D+L
Sbjct: 243 GSVSERDLLALLG-AIAQDHPEAVLDATRQILDRGREPLTILQNLAAFYRDLLIAKT--A 299
Query: 705 KDRHRRKFFRRQPLS-------KEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+RH +Q + M + K L +AE Q++ + WL LL L
Sbjct: 300 PNRHNLVACTQQTWTALVECAQSLSMSTILLGQKHLQQAELQIKNTTQPRLWLEVTLLGL 359
Query: 758 APDQQYVLPSSSADTSFSHSPLD 780
P +PS + SP D
Sbjct: 360 LPSAN--IPSIATGVLPVASPTD 380
>gi|56750639|ref|YP_171340.1| DNA polymerase III subunits gamma and tau [Synechococcus elongatus
PCC 6301]
gi|81299721|ref|YP_399929.1| DNA polymerase III, tau subunit [Synechococcus elongatus PCC 7942]
gi|56685598|dbj|BAD78820.1| DNA polymerase III gamma and tau subunits [Synechococcus elongatus
PCC 6301]
gi|81168602|gb|ABB56942.1| DNA polymerase III, tau subunit [Synechococcus elongatus PCC 7942]
Length = 652
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 122/369 (33%), Positives = 201/369 (54%), Gaps = 21/369 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+ F DLVGQ +A+ LS A+ ++++ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQCFADLVGQEAIARTLSQALAQQRIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NCQ P PCG C +C + RG + ++ E+ N ++I +L++ + ++
Sbjct: 63 NCQQSTVPTASPCGECEACRAIARGNALDVIEIDAASNTGVDNIRELIERAQFAPVQCRF 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RVVF+L ++ + IISRCQ+F F ++
Sbjct: 123 KVYVIDECHMLSTAAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQRFDFRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ LQ IA KE IEI+ A+ L+A + G LRDAE L+QL LL ++ V +L+
Sbjct: 183 QAMTDHLQVIAQKESIEIEPTAIALVAQLAQGGLRDAESLLDQLGLLPPPVTPEAVWDLL 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G + + +L+ LL+ + D + +R +++ G EPL TV+ ++ A S D
Sbjct: 243 GAVPERQLLQLLEAIAANDPEALLTLIRQLLDRGREPL-------TVLQNLTAFSRDLLI 295
Query: 706 DR---HRRKFFRRQPLSKEEM---------EKLRQALKTLSEAEKQLRMSNDKLTWLTAA 753
R RR + +E+ E++ Q + L ++E Q++ + WL A
Sbjct: 296 ARTAPQRRDLTTVTEATWQELCTFAEDWTPEQILQLQQHLRQSELQIKNTTQPRLWLEVA 355
Query: 754 LLQLAPDQQ 762
LL L P Q
Sbjct: 356 LLGLLPSAQ 364
>gi|307591376|ref|YP_003900175.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 7822]
gi|306986230|gb|ADN18109.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
7822]
Length = 477
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 167/299 (55%), Gaps = 4/299 (1%)
Query: 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466
RH KY P+T DLVGQ +A L+NA+ ++ Y+F GP GTGKTS ARI A++
Sbjct: 2 RHLPFHLKYRPQTLADLVGQQPIATTLTNAITTGRIAPAYLFSGPRGTGKTSTARILAKS 61
Query: 467 LNCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ 524
LNC S + P PCG C+SC + S ++ E+ N E I DL++ P +
Sbjct: 62 LNCLSEDNPTVTPCGQCDSCGAIASSNSLDVIEIDAASNNSVEQIRDLIEKS-QFVPHNL 120
Query: 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMK 584
Y++++ D+C LS + A+ K ++ P RVVFIL ++ + L IISRCQ+F F +
Sbjct: 121 YKVWILDECHALSHFAIQALLKTLENPPERVVFILCTTEPERLGDTIISRCQRFNFRRES 180
Query: 585 DADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQEL 644
D+ II L IA +E I ID L+LIA G LRDA+ LEQLSLL ++ V EL
Sbjct: 181 DSVIIEHLAAIAQRENITIDPHVLRLIAQHCQGGLRDAQCLLEQLSLLSNTLTPEQVYEL 240
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV-ITDILAGSYD 702
G + ++ L+ L + DT +K R + E G++PL + L IT +LA + D
Sbjct: 241 TGSVPEQDLLLLFNAIQEEDTEQVIKRTRELYEVGLDPLVIAQNLLEFHITALLAQTAD 299
>gi|436670132|ref|YP_007317871.1| DNA polymerase III, subunit gamma/tau [Cylindrospermum stagnale PCC
7417]
gi|428262404|gb|AFZ28353.1| DNA polymerase III, subunit gamma/tau [Cylindrospermum stagnale PCC
7417]
Length = 499
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 126/373 (33%), Positives = 193/373 (51%), Gaps = 19/373 (5%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L QKY P+T +LVGQ + AL+NAV ++ Y+F G GTGKTS ARIFA++LNC
Sbjct: 6 LHQKYRPQTLAELVGQPYIKTALTNAVKNLQIAPAYLFTGSRGTGKTSTARIFAKSLNCL 65
Query: 471 SLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
+ ++P KPCG C SC S + S ++ E+ N + L++ +YRIF
Sbjct: 66 NTKKPTDKPCGICQSCRSIETSNSLDVSEIDAASNNGVDDARALIERCTLVPVAGRYRIF 125
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ L+ S +A+ K ++ P VVFIL ++ L + I+SRCQ F F + I
Sbjct: 126 ILDESHQLTTQSQNALLKCIEEPPPHVVFILCTTELHKVLPTIVSRCQVFNFRTLSVKTI 185
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLI 648
+ L+ +A E I I+ +AL IA SDG LRDA L Q SLL I+ V E+VG +
Sbjct: 186 VQHLRIVADAESISINDEALIAIARLSDGGLRDALQLLGQASLLNADITAHHVMEIVGGV 245
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH 708
++ +L+ +L + +T N ++ RV++++G P ++S L D+L K
Sbjct: 246 TETELMAILQAITTNNTFNLLQVARVLVDSGKTPKLILSNLLQTYRDLLV-----IKSVP 300
Query: 709 RRKFFRRQPLSKEEM---------EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759
+ + +S ++ E L +L L +AE LR + + WL LL L P
Sbjct: 301 KEQALLTGCVSHTQLKAFANHWNFETLNLSLAELQKAENYLRYTVNAAVWLEVCLLNLMP 360
Query: 760 DQQYVLPSSSADT 772
+LP + T
Sbjct: 361 G---LLPVGATKT 370
>gi|87123287|ref|ZP_01079138.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9917]
gi|86169007|gb|EAQ70263.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9917]
Length = 597
Score = 199 bits (506), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 115/343 (33%), Positives = 200/343 (58%), Gaps = 7/343 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L KY P+ F LVGQ+++A LS+A+ ++ Y+F GP GTGKTS ARI AR+L
Sbjct: 5 YQPLHHKYRPQRFDQLVGQDVIAATLSHALRSDRIAPAYLFSGPRGTGKTSSARILARSL 64
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S + P +PCG C C + G + ++ E+ N ++I DL++ + +++
Sbjct: 65 NCLSSDTPTPEPCGTCELCTTISAGTALDVIEIDAASNTGVDNIRDLIERSRFAPVQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RVVF+L ++ + I+SRCQ+F F ++
Sbjct: 125 KVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIPL 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L+WIA +E I I+ +AL ++A R+ G LRDAE L+QLSLL I V EL+
Sbjct: 185 EALEAHLRWIAEQEAIGIEPEALHVVAQRAQGGLRDAESLLDQLSLLPAPIKAEAVWELL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD--ILAGSYDF 703
G + +++L+ L + + + + ++ R +++ G +P A++ LA ++ D ++A + +
Sbjct: 245 GAVPEQELIGLAEALANGEPLPLLEGSRRLLDRGRDPGAVLQGLAAILRDLVLMAAAPER 304
Query: 704 TKDRHRRKFFRRQ--PLSKE-EMEKLRQALKTLSEAEKQLRMS 743
+ R Q PL++ ++L Q L +E+QLR+S
Sbjct: 305 PELTSVSPQLRDQLPPLAQRIGRQRLLQWQARLRGSEQQLRLS 347
>gi|428204196|ref|YP_007082785.1| DNA polymerase III subunits gamma and tau [Pleurocapsa sp. PCC
7327]
gi|427981628|gb|AFY79228.1| DNA polymerase III, subunit gamma/tau [Pleurocapsa sp. PCC 7327]
Length = 688
Score = 199 bits (506), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 130/396 (32%), Positives = 217/396 (54%), Gaps = 15/396 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ +A L+NA++ +++ Y+F GP GTGKTS ARI ++L
Sbjct: 3 YEPLHHKYRPQTFADLVGQEAIATTLTNAIVSQRIAPAYLFAGPRGTGKTSSARILTKSL 62
Query: 468 NCQSLEQPKP--CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S E+P P CG C C + RG + + E+ N ++I DL++ + +Y
Sbjct: 63 NCLSSERPTPTPCGKCEVCRAIARGSALDAIEIDAASNTGVDNIRDLIERAQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++ D+C LS +++A+ K ++ P RV+FIL ++ + IISRCQ+F F ++
Sbjct: 123 KVYAIDECHMLSTAAFNALLKTLEEPPERVIFILATTDPQRVLPTIISRCQRFDFRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L++IAS+E IEI+ +A+ L+A ++G LRDA+ L+QLSLL +I+ V +LV
Sbjct: 183 ESMVAHLKYIASQENIEINDEAIILVAQIANGGLRDAQSLLDQLSLLSGKITPDRVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTV-KNLRVIMETGVEPLALMSQLATVITDIL-AGSYDF 703
G +++ L+ LL A+++D V + R +M G EPL ++ LA ++L A +
Sbjct: 243 GSVAERDLLKLLR-AIASDKAEAVLEQCRHLMNRGREPLVILQNLANFYLNLLIAKTAPN 301
Query: 704 TKDRHRRKFFRRQPLSKE----EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759
D Q L +E E+ + + + L ++E QL+ + WL LL L P
Sbjct: 302 RPDMVAVTSSTWQQLCQEAQRWELNAILRGQQHLKDSEAQLKNTTQPRLWLEVTLLGLLP 361
Query: 760 DQQYV------LPSSSADTSFSHSPLDLENAGGRGM 789
+ P +S++ + S L+ + M
Sbjct: 362 SAYHPGGAVVGQPPTSSEIALSRRATQLQPSASNSM 397
>gi|428223195|ref|YP_007107365.1| DNA polymerase III subunits gamma and tau [Synechococcus sp. PCC
7502]
gi|427996535|gb|AFY75230.1| DNA polymerase III, subunit gamma/tau [Synechococcus sp. PCC 7502]
Length = 601
Score = 199 bits (505), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 121/357 (33%), Positives = 194/357 (54%), Gaps = 7/357 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ +A LSNA+ +++ Y+ G GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQTFADLVGQEAIATTLSNAMKTQRIAPAYLLTGARGTGKTSTARIMAKSL 62
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S + P PCG C C+S RG + +I E+ N E+I DL++ + ++Y
Sbjct: 63 NCLSFDVPTATPCGKCEMCLSIIRGNALDITEIDAASNTGVENIRDLIERSQFAPVQARY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++ D+C LS +++A+ K ++ P RVVFIL ++ + IISRCQ+F F ++
Sbjct: 123 KVYAIDECHMLSTSAFNALLKTLEEPPDRVVFILATTDPQRVLPTIISRCQRFDFRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L IA E I I+ +AL L+A + G LRDAE L+QLSL I V +LV
Sbjct: 183 EPMVQHLTQIAQIENININPEALLLVAQMAQGGLRDAESLLDQLSLHVGEIKNETVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSY 701
G + + L+++L+ ++V ++ +R IM+ G EPL ++ L D+L AG
Sbjct: 243 GTVPERDLLEILEAIALQNSVAVIEKIRQIMDRGREPLTVLQSLGGFYRDLLIAKTAGDR 302
Query: 702 DFTKDRHRRKFFRRQPLSKE-EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ + +++E +E + + L AE Q++ + WL L+ L
Sbjct: 303 QDLVALTAGTWAKLNQIAQEFPLESILLGQQHLRSAEVQIKNTTQPRLWLEITLIGL 359
>gi|260435304|ref|ZP_05789274.1| DNA polymerase III, tau subunit [Synechococcus sp. WH 8109]
gi|260413178|gb|EEX06474.1| DNA polymerase III, tau subunit [Synechococcus sp. WH 8109]
Length = 626
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/346 (33%), Positives = 198/346 (57%), Gaps = 12/346 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L KY P+ F LVGQ +A L +A+ ++ Y+F GP GTGKTS ARI AR+L
Sbjct: 5 YQPLHHKYRPQRFDQLVGQEAIAATLGHALTSNRIAPAYLFSGPRGTGKTSSARILARSL 64
Query: 468 NCQSLE--QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + E P+PCG C C + G + ++ E+ N ++I +L++ + +++
Sbjct: 65 NCLNSEGPTPEPCGTCELCTTIAAGTALDVIEIDAASNTGVDNIRELIERSRFAPVQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P +VVF+L ++ + I+SRCQ+F F ++
Sbjct: 125 KVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIPL 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L WIA +E IEI +A+ ++A RS G LRDAE L+QLSLL I V +L+
Sbjct: 185 NALNKHLSWIAEQEAIEIKPEAIHVVAQRSQGGLRDAESLLDQLSLLPPPIEAAAVWDLL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD--ILAGSYDF 703
G + +++L++L+ SA+ V +K R +++ G +P A++ LA ++ D ++A + D
Sbjct: 245 GAVPEQELLELVGAMSSAEPVQLLKATRNLLDRGRDPGAVLQGLAGMLRDLVLMAAAPD- 303
Query: 704 TKDRHRRKFFRRQPLSKEEMEKLRQAL--KTLSEAEKQLRMSNDKL 747
R + P +E++ L +A+ L + + QLR + +L
Sbjct: 304 -----RLELTSVSPQFREQLPALAKAIGRARLLQWQAQLRGTEQQL 344
>gi|194476906|ref|YP_002049085.1| DNA polymerase, gamma and tau subunits [Paulinella chromatophora]
gi|171191913|gb|ACB42875.1| DNA polymerase, gamma and tau subunits [Paulinella chromatophora]
Length = 584
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 124/382 (32%), Positives = 209/382 (54%), Gaps = 7/382 (1%)
Query: 405 NGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFA 464
N +Q L QKY P+ LVGQ +A LSNA++ R++ Y+F GP GTGKTS ARI A
Sbjct: 2 NQVYQPLHQKYRPQRLDQLVGQEAIATTLSNALVYRRIATAYLFSGPRGTGKTSSARILA 61
Query: 465 RALNCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP 522
R+LNC + + P +PCG C CIS G++ ++ E+ N E+I +L++ S
Sbjct: 62 RSLNCLNSDSPTTEPCGKCELCISITSGRALDVIEIDAASNTGVENIRELIERSKFSPVQ 121
Query: 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPK 582
++++++V D+C LS +++A+ K ++ +++FIL ++ + +ISRCQ+F F +
Sbjct: 122 ARWKVYVIDECHMLSAAAFNALLKTLEEPQPKLLFILATTDPQRMLTTVISRCQRFDFRR 181
Query: 583 MKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQ 642
+ + L +IA +E I I +A+ L+A + GSLRDAE L+QLSLL I V V
Sbjct: 182 VCPITLKGHLVFIADREDISISVEAISLVAKSAQGSLRDAENLLDQLSLLQGPIEVNSVW 241
Query: 643 ELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----- 697
EL+G I +++L++L +S + ++ R + + G EP+ ++ L +++ D++
Sbjct: 242 ELLGEIPEQELLELGSALISEKPLTILERCRCLFDRGREPILILQGLTSILRDLVLLIEA 301
Query: 698 AGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
D + + ++ S ++ KL + L +E +LR S WL LL L
Sbjct: 302 PDRPDLSNISLQFWSILQELASDVKLSKLLKWQSKLKGSEFELRQSAQPRLWLEVILLGL 361
Query: 758 APDQQYVLPSSSADTSFSHSPL 779
D ++ S D S + S +
Sbjct: 362 LADSNSLVKPKSIDLSIASSAI 383
>gi|254525893|ref|ZP_05137945.1| DNA polymerase, gamma and tau subunit [Prochlorococcus marinus str.
MIT 9202]
gi|221537317|gb|EEE39770.1| DNA polymerase, gamma and tau subunit [Prochlorococcus marinus str.
MIT 9202]
Length = 586
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/366 (30%), Positives = 198/366 (54%), Gaps = 15/366 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H+ QKY P +LVGQ ++ L A++ +K+ Y+F GP GTGKTS ARIFA++L
Sbjct: 5 HKPFHQKYRPNNLDELVGQKFISITLKEALLTKKIAPAYLFNGPRGTGKTSSARIFAKSL 64
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + ++P PC C+ C G + +I E+ N E+I ++++ + +++
Sbjct: 65 NCLAFDKPTINPCCKCDLCRQITDGNALDIIEIDAASNTGVENIREIIERARFAPTQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS + +A+ K ++ P RV+FIL +++ + + + I SRCQKF F ++
Sbjct: 125 KVYVIDECHMLSTAASNALLKTIEEPPSRVIFILATTNPERVLNTIQSRCQKFDFRRISP 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
DI L IA KE IE + ALK+IA RS+G +RDA+ EQL+LL + I++ +Q L+
Sbjct: 185 GDIFQHLTEIAEKESIEYEVQALKMIAKRSNGGMRDAQSLFEQLNLLPEGITIKNIQNLL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G +S+ +L +L+ + + + + + + G EP ++ L + D+L +T
Sbjct: 245 GEVSEIELTNLIQSLVENNPESLIITCNKLYDAGNEPNQIIIGLLNITRDLLL----YTT 300
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQAL---------KTLSEAEKQLRMSNDKLTWLTAALLQ 756
D + ++E++K+ + + L E Q++ S++ W L
Sbjct: 301 DNKYSDLYYTSDEFQDELDKISKTINKSTIINWHNNLRNIEYQIKTSDNPRLWFEIHLTG 360
Query: 757 LAPDQQ 762
L +Q+
Sbjct: 361 LLNNQE 366
>gi|33862332|ref|NP_893892.1| DNA polymerase III subunits gamma/tau [Prochlorococcus marinus str.
MIT 9313]
gi|33640445|emb|CAE20234.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9313]
Length = 606
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/343 (34%), Positives = 197/343 (57%), Gaps = 7/343 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L KY P+ F LVGQ+ +A LS+A+ ++ Y+F GP GTGKTS ARI AR+L
Sbjct: 5 YQPLHHKYRPQRFDALVGQDAIAATLSHALRSSRIAPAYLFSGPRGTGKTSSARILARSL 64
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + +QP +PCG C C S G + ++ E+ N ++I +L++ + +++
Sbjct: 65 NCLNCDQPTPEPCGNCELCKSIAAGTALDVIEIDAASNTGVDNIRELIERSRFAPVQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RVVF+L ++ + I+SRCQ+F F ++
Sbjct: 125 KVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIPL 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L+ IA++E I I+ +AL ++A R+ G LRDAE L+QLSLL I V EL+
Sbjct: 185 EALEQHLEMIATREAIPIEPEALHVVAQRAQGGLRDAESLLDQLSLLPGPIKAEAVWELM 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD--ILAGSYDF 703
G + +++L+ L + AD ++ ++ R ++ G +P AL+ LA V+ D ++ + D
Sbjct: 245 GAVPEQELLKLAEALAQADPLSLLETCRNLLNRGRDPGALLQGLAAVLRDLVLMTAAPDR 304
Query: 704 TKDRHRRKFFRRQ--PLSKE-EMEKLRQALKTLSEAEKQLRMS 743
+ FR Q PL+ + +L Q L +E QLR S
Sbjct: 305 PELTSVSPQFRNQLPPLASQIGRHQLLQWQVQLKGSENQLRHS 347
>gi|78211617|ref|YP_380396.1| DNA polymerase III, tau subunit [Synechococcus sp. CC9605]
gi|78196076|gb|ABB33841.1| DNA-directed DNA polymerase [Synechococcus sp. CC9605]
Length = 614
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 114/346 (32%), Positives = 198/346 (57%), Gaps = 12/346 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L KY P+ F LVGQ +A L +A+ ++ Y+F GP GTGKTS ARI AR+L
Sbjct: 5 YQPLHHKYRPQRFDQLVGQEAIAATLGHALTSNRIAPAYLFSGPRGTGKTSSARILARSL 64
Query: 468 NCQSLE--QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + E P+PCG C C + G + ++ E+ N ++I +L++ + +++
Sbjct: 65 NCLNSEGPTPEPCGTCELCTTIAAGTALDVIEIDAASNTGVDNIRELIERSRFAPVQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P +VVF+L ++ + I+SRCQ+F F ++
Sbjct: 125 KVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIPL 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L WIA +E IEI +A+ ++A RS G LRDAE L+QLSLL I V +L+
Sbjct: 185 DALNTHLSWIAEQEAIEIKPEAIHVVAQRSQGGLRDAESLLDQLSLLPPPIEAAAVWDLL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD--ILAGSYDF 703
G + +++L++L+ SA+ V ++ R +++ G +P A++ LA ++ D ++A + D
Sbjct: 245 GAVPEQELLELVGAMSSAEPVQLLEATRNLLDRGRDPGAVLQGLAGMLRDLVLMAAAPD- 303
Query: 704 TKDRHRRKFFRRQPLSKEEMEKLRQAL--KTLSEAEKQLRMSNDKL 747
R + P +E++ L +A+ L + + QLR + +L
Sbjct: 304 -----RLELTSVSPQFREQLPALAKAIGRARLLQWQAQLRGTEQQL 344
>gi|434393523|ref|YP_007128470.1| DNA polymerase III, subunits gamma and tau [Gloeocapsa sp. PCC
7428]
gi|428265364|gb|AFZ31310.1| DNA polymerase III, subunits gamma and tau [Gloeocapsa sp. PCC
7428]
Length = 648
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 123/371 (33%), Positives = 193/371 (52%), Gaps = 16/371 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P++F +LVGQ +A L NAV ++ Y+F GP GTGKTS ARI A++L
Sbjct: 2 YEPLHHKYRPQSFAELVGQEAIATTLINAVRTSRIAPAYLFTGPRGTGKTSSARILAKSL 61
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + P PCG C C G + ++ E+ N ++I ++++ + +Y
Sbjct: 62 NCLASRVPTETPCGVCEVCRGIANGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRY 121
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++ D+C LS +++A+ K ++ P VVF+L ++ + IISRCQ+F F ++
Sbjct: 122 KVYAIDECHMLSTAAFNALLKTLEEPPPHVVFVLATTDPQRVLPTIISRCQRFDFRRIPL 181
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
A ++ LQ IA++E I+I +AL L+A S G LRDAE L+QLSLL + ++V V +LV
Sbjct: 182 AAMVQHLQAIAAQEQIQITSEALTLVAQLSQGGLRDAESLLDQLSLLPE-VTVERVWDLV 240
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G +++ L+ LLD + + R ++E G EPL ++ LA+ D+L
Sbjct: 241 GSVAEPDLLALLDAIAQNNAEQLLDRTRQLLERGREPLTILQNLASCYRDLLIAK----T 296
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQAL---------KTLSEAEKQLRMSNDKLTWLTAALLQ 756
HR + + M L Q K L +E Q++ S WL LL
Sbjct: 297 APHRNDLVACTATTWQAMCDLVQQWNIATILDGQKNLKASEAQIKTSTQPRLWLEVTLLG 356
Query: 757 LAPDQQYVLPS 767
L P PS
Sbjct: 357 LLPTTSTPQPS 367
>gi|318043030|ref|ZP_07974986.1| DNA polymerase III subunits gamma and tau [Synechococcus sp.
CB0101]
Length = 622
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 110/312 (35%), Positives = 179/312 (57%), Gaps = 6/312 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L KY P+ F LVGQ +A L NA+ ++ Y+F GP GTGKTS ARI AR+L
Sbjct: 5 YQPLHHKYRPQRFDQLVGQEAIAATLGNALRSGRIAPAYLFSGPRGTGKTSSARILARSL 64
Query: 468 NCQSLE--QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S + P+PCG C C S G + ++ E+ N ++I +L++ + +++
Sbjct: 65 NCISGDGPTPEPCGTCELCTSIANGNALDVIEIDAASNTGVDNIRELIERSRFAPVQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RVVF+L ++ + I+SRCQ+F F ++
Sbjct: 125 KVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIPL 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L WIA +E I I +AL ++A R+ G LRDAE L+QLSLL + V EL+
Sbjct: 185 DALERHLGWIAEQEQISITAEALHVVAQRAQGGLRDAESLLDQLSLLPPPVEPQAVWELL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD-ILAGSYDFT 704
G + +++L+ L + + + + ++ +R ++E G EP A++ LA ++ D +LAG
Sbjct: 245 GAVPEQELLQLAESLAAGEPLGLIEAIRTLLERGREPSAVLQGLAGLLRDLVLAG---VA 301
Query: 705 KDRHRRKFFRRQ 716
DR F Q
Sbjct: 302 PDRLELTSFSPQ 313
>gi|126658850|ref|ZP_01729993.1| DNA-directed DNA polymerase [Cyanothece sp. CCY0110]
gi|126619800|gb|EAZ90526.1| DNA-directed DNA polymerase [Cyanothece sp. CCY0110]
Length = 692
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 123/360 (34%), Positives = 201/360 (55%), Gaps = 7/360 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ +A LSNA+ +++ Y+F GP GTGKTS ARI A++L
Sbjct: 10 YEPLHHKYRPQTFADLVGQEAIATTLSNAIASQRIAPAYLFTGPRGTGKTSSARILAKSL 69
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC ++E P PCG C C + RG + ++ E+ N ++I ++++ + +Y
Sbjct: 70 NCLAVEVPTAAPCGQCEVCRAITRGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRY 129
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RV+F+L ++ + I+SRCQ+F + ++
Sbjct: 130 KVYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTILSRCQRFDYRRIPL 189
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L IA KE IEI+ +AL L+A ++G LRDAE L+QLSLL I+ V +LV
Sbjct: 190 EAMVNHLTIIAQKENIEIETEALILVAQIANGGLRDAESLLDQLSLLSGSITSEKVWDLV 249
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G + ++ L+ LL S + +++ R +M+ G EPL ++ LA ++L T+
Sbjct: 250 GAVPEKDLLSLLQAINSNNPEIVIESCRKLMDRGREPLVVLQNLAGFYLNLLIAKTAPTR 309
Query: 706 -DRHRRKFFRRQPLSKE----EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760
D L E + E + + + L E+E QL+ + WL LL L PD
Sbjct: 310 SDLVAVTSTTWDDLCSEAKHWKTETILRGQQKLKESEVQLKNTTQPRLWLEVTLLSLLPD 369
>gi|33864597|ref|NP_896156.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 8102]
gi|33632120|emb|CAE06576.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 8102]
Length = 593
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 117/343 (34%), Positives = 196/343 (57%), Gaps = 7/343 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L KY P+ F LVGQ +A L +A+ ++ Y+F GP GTGKTS ARI AR+L
Sbjct: 5 YQPLHHKYRPQRFDQLVGQEAIAATLGHALTSNRIAPAYLFSGPRGTGKTSSARILARSL 64
Query: 468 NCQSLE--QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + + P+PCG C C + G + ++ E+ N ++I +L++ + +++
Sbjct: 65 NCLNSDGPTPEPCGTCELCTTIAAGTALDVIEIDAASNTGVDNIRELIERSRFAPVQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P +VVF+L ++ + I+SRCQ+F F ++
Sbjct: 125 KVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIPL 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L WIA +E IEI +A+ ++A RS G LRDAE L+QLSLL I V +L+
Sbjct: 185 DALEAHLSWIAEQEAIEIQPEAIHVVALRSQGGLRDAESLLDQLSLLPPPIEATAVWDLL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD--ILAGSYDF 703
G + +++L+ L+ SA+ V ++ R +++ G +P A++ LA ++ D ++A + D
Sbjct: 245 GAVPEQELLQLVQAMSSAEPVALLEATRNLLDRGRDPGAVLQGLAGILRDLVLMAAAPDR 304
Query: 704 TKDRHRRKFFRRQ--PLSKE-EMEKLRQALKTLSEAEKQLRMS 743
+ FR Q PL+K +L Q L +E+QLR S
Sbjct: 305 PELTGVSPQFRDQLPPLAKALGRARLLQWQAQLRGSEQQLRQS 347
>gi|172037444|ref|YP_001803945.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. ATCC
51142]
gi|354553674|ref|ZP_08972980.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. ATCC
51472]
gi|171698898|gb|ACB51879.1| DNA polymerase III gamma and tau subunits [Cyanothece sp. ATCC
51142]
gi|353554391|gb|EHC23781.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. ATCC
51472]
Length = 683
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 123/360 (34%), Positives = 200/360 (55%), Gaps = 7/360 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ +A LSNA+ +++ Y+F GP GTGKTS ARI A++L
Sbjct: 4 YEPLHHKYRPQTFADLVGQEAIATTLSNAIASQRIAPAYLFTGPRGTGKTSSARILAKSL 63
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC +++ P PCG C C + RG + ++ E+ N ++I ++++ + +Y
Sbjct: 64 NCLAVKVPTASPCGQCEVCRAIARGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRY 123
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RV+F+L ++ + IISRCQ+F + ++
Sbjct: 124 KVYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTIISRCQRFDYRRIPL 183
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L IA KE IEI+ +AL L+A ++G LRDAE L+QLSLL I+ V +LV
Sbjct: 184 EAMVEHLTIIAQKENIEIEAEALTLVAQIANGGLRDAESLLDQLSLLSGGITPEKVWDLV 243
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G + + L+ LL S + +++ R +M+ G EPL ++ LA ++L T+
Sbjct: 244 GAVPERDLLSLLKAINSNNPELVIESCRKLMDRGREPLVVLQNLAAFYLNLLIAKTAPTR 303
Query: 706 -DRHRRKFFRRQPLSKE----EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760
D L E + E + + + L E+E QL+ + WL LL L PD
Sbjct: 304 SDLVAVTSTTWDDLCTEAEQWQTETILRGQQKLKESEVQLKNTTQPRLWLEVTLLGLLPD 363
>gi|317968362|ref|ZP_07969752.1| DNA polymerase III subunits gamma and tau [Synechococcus sp.
CB0205]
Length = 614
Score = 196 bits (498), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 115/345 (33%), Positives = 195/345 (56%), Gaps = 10/345 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L KY P+ F LVGQ +A L NA+ ++ Y+F GP GTGKTS ARI AR+L
Sbjct: 5 YQPLHHKYRPQRFDQLVGQEAIAATLGNALRSGRIAPAYLFSGPRGTGKTSSARILARSL 64
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S + P +PCG C C S G + ++ E+ N ++I +L++ + +++
Sbjct: 65 NCLSSDHPTPEPCGSCELCTSIANGNALDVIEIDAASNTGVDNIRELIERSRFAPVQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RVVF+L ++ + I+SRCQ+F + ++
Sbjct: 125 KVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTEPQRVLPTILSRCQRFDYRRIPL 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L WIA +E I+I +AL ++A R+ G LRDAE L+QLSLL + V EL+
Sbjct: 185 DALEQHLGWIAKEENIQITPEALHVVAQRAQGGLRDAESLLDQLSLLPGPVEPTAVWELL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD-ILAGSYDFT 704
G + +++L+ L A+ + ++ +R ++E G EP A++ +A ++ D +LAG
Sbjct: 245 GAVPEQELLQLAQALAGAEPLGVIEAIRNLLERGREPGAVLQGMAGLLRDLVLAGVAP-- 302
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQAL--KTLSEAEKQLRMSNDKL 747
+R + P + E+ L +++ TL + QL+ S +L
Sbjct: 303 ---NRLELTSFSPQIRGELPDLARSIGKATLLRWQAQLKGSEQQL 344
>gi|300811148|ref|ZP_07091660.1| DNA polymerase III, subunit gamma and tau [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
gi|300497852|gb|EFK32862.1| DNA polymerase III, subunit gamma and tau [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
Length = 607
Score = 196 bits (497), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 196/354 (55%), Gaps = 11/354 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF D+VGQ + L N+++R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L++ +PC C++C++ D+G +I E+ N + I DLLD + + +Y++
Sbjct: 63 NCLNLQEGEPCNECSNCLAADQGAMPDIIEMDAASNNSVDEIRDLLDKVHYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F + +
Sbjct: 123 YIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRFSNEA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +EG+E + ALK+IA +DG +RDA L+Q LS + E+ G
Sbjct: 183 MVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKSSVRYEDALEVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
+ E++ LL L+ D+ + + ++ G +++++ ++ + G +
Sbjct: 243 FAAQEQVEKLLLALLNGDSQTALDLAKSAIQDGASAQNILNEIISLTIQAMLFTKTGQGE 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
F D ++ ++ P ++ Q + ++A LR +N + L L+Q
Sbjct: 303 FLTDDFAQEIAQQSP------DRFSQIIDQANDALGSLRFTNQQQIPLEVFLVQ 350
>gi|428769843|ref|YP_007161633.1| DNA polymerase III subunits gamma and tau [Cyanobacterium aponinum
PCC 10605]
gi|428684122|gb|AFZ53589.1| DNA polymerase III, subunits gamma and tau [Cyanobacterium aponinum
PCC 10605]
Length = 626
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 116/361 (32%), Positives = 195/361 (54%), Gaps = 11/361 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF L GQ +AQ L NA+ K+ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQTFSQLTGQEAIAQTLINAIKNEKIVPAYLFCGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC ++P +PCG C C S G + ++ E+ N ++I ++++ + +Y
Sbjct: 63 NCIESDRPTAEPCGKCEVCKSISNGSALDVVEIDAASNTGVDNIREIIEKAQYAPVKCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ RV+F+L ++ + IISRCQ+F + ++
Sbjct: 123 KVYVIDECHMLSTAAFNALLKTLEEPSPRVIFVLATTDPQRVLPTIISRCQRFDYRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+++ LQ IA KE I+I + L L+A ++G +RDA+ L+QLSLL I+ V +LV
Sbjct: 183 IEMVKHLQDIAIKENIDITPEGLSLVAQLANGGMRDAQTLLDQLSLLSGTITPERVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G +S++ L+ L+ S + + R +++ G EPL ++ LA +L K
Sbjct: 243 GAVSEQDLLALISAIASDNPEEVIIQCRKLLDRGREPLIVLQNLANFYLTLLIAKTSPQK 302
Query: 706 -------DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
D +K Q + +++ + Q K L ++E Q+R + WL LL L
Sbjct: 303 KELVAITDDTWQKLI--QEAHQWDLKVILQGQKKLKDSEVQIRNTTQPRLWLEITLLSLL 360
Query: 759 P 759
P
Sbjct: 361 P 361
>gi|254431925|ref|ZP_05045628.1| DNA polymerase III, gamma and tau subunit [Cyanobium sp. PCC 7001]
gi|197626378|gb|EDY38937.1| DNA polymerase III, gamma and tau subunit [Cyanobium sp. PCC 7001]
Length = 645
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 176/296 (59%), Gaps = 3/296 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L KY P+ F LVGQ +A ++NA+ ++ Y+F GP GTGKTS ARI AR+L
Sbjct: 5 YQPLHHKYRPQRFDQLVGQEAIAATMANALRSGRIAPAYLFSGPRGTGKTSSARILARSL 64
Query: 468 NCQSL--EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + P PCG C C + G + ++ E+ N ++I +L++ + +++
Sbjct: 65 NCTAAAGPTPDPCGRCELCTTIAAGNALDVIEIDAASNTGVDNIRELIERSRFAPVQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P +VVF+L ++ + I+SRCQ+F F ++
Sbjct: 125 KVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIPL 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L+WIA++E I I +AL ++A R+ G LRDAE L+QLSLL + V V +L+
Sbjct: 185 ESLEGHLRWIAAEEAIAITPEALHVVAQRAQGGLRDAESLLDQLSLLPPPVEVDAVWDLL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD-ILAGS 700
G + +++L+ L A+ + ++ R ++E G EP A++ L +++ D +LAG+
Sbjct: 245 GAVPEQELLQLAGALAGAEPIALIEATRHLLERGREPAAVLQGLTSLLRDLVLAGT 300
>gi|218441342|ref|YP_002379671.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 7424]
gi|218174070|gb|ACK72803.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
7424]
Length = 730
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 122/350 (34%), Positives = 192/350 (54%), Gaps = 7/350 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ +AQ L NA+ ++ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQTFMDLVGQEAIAQTLINAITTNRIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQPKP--CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S ++P P CG C C + R + +I E+ N ++I ++++ + +Y
Sbjct: 63 NCLSSDKPTPIPCGTCEVCKAIARSSALDIIEIDAASNTGVDNIREIIERAQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P VVF+L ++ + IISRCQ+F + ++
Sbjct: 123 KVYVIDECHMLSVAAFNALLKTLEEPPNHVVFVLATTDPQRVLPTIISRCQRFDYRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
D++ L+ IA+KE I+ID +A+ L+A ++G LRDAE L+QLSLL I+ V ELV
Sbjct: 183 EDMVKHLKLIANKESIDIDDEAITLVAQIANGGLRDAESLLDQLSLLSGTITPARVWELV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLA-----TVITDILAGS 700
G I + L+ LL S D + + + R +M G EPL ++ LA VI
Sbjct: 243 GAIPELDLLKLLKAIASKDPTHILDSCRHLMNRGKEPLTILQNLAGFYLNLVIAKTAPTR 302
Query: 701 YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWL 750
D Q + +E++ Q + L E+E QL+ + WL
Sbjct: 303 SDLVAVTASTWTQLCQEAQQWNLEEILQGQQHLKESEAQLKHTTQPRLWL 352
>gi|313124288|ref|YP_004034547.1| DNA polymerase iii, gamma/tau subunit [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|312280851|gb|ADQ61570.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 607
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 196/354 (55%), Gaps = 11/354 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF D+VGQ + L N+++R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L++ +PC C++C++ D+G +I E+ N + I DLLD + + +Y++
Sbjct: 63 NCLNLQEGEPCNECSNCLAADQGAMPDIIEMDAASNNSVDEIRDLLDKVHYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F + +
Sbjct: 123 YIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRFSNEA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +EG+E + ALK+IA +DG +RDA L+Q LS + E+ G
Sbjct: 183 MVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKSSVRYEDALEVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
+ E++ LL L+ D+ + + ++ G +++++ ++ + G +
Sbjct: 243 FAAQEQVEKLLLALLNGDSQTALDLAKSAIQDGASAQNILNEIISLTVQAMLFTKTGQGE 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
F D ++ ++ P ++ Q + ++A LR +N + L L+Q
Sbjct: 303 FLTDDFAQEIAQQSP------DRFSQIIDQANDALGSLRFTNQQQIPLEVFLVQ 350
>gi|422844197|ref|ZP_16890907.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
gi|325685702|gb|EGD27781.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
Length = 607
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 195/354 (55%), Gaps = 11/354 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF D+VGQ + L N+++R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L++ +PC C++C+ D+G +I E+ N + I DLLD + + +Y++
Sbjct: 63 NCLNLQEGEPCNECSNCLDADQGAMPDIVEMDAASNNSVDEIRDLLDKVHYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F + +
Sbjct: 123 YIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRFSNEA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +EG+E + ALK+IA +DG +RDA L+Q LS + E+ G
Sbjct: 183 MVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKSSVRYEDALEVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
+ E++ LL L+ D+ + + ++ G +++++ ++ + G +
Sbjct: 243 FAAQEQVEKLLLALLNGDSQTALDLAKSAIQDGASAQNILNEIISLTVQAMLFTKTGQGE 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
F D ++ ++ P ++ Q + ++A LR +N + L L+Q
Sbjct: 303 FLTDDFAQEIAQQSP------DRFSQIIDQANDALGSLRFTNQQQIPLEVFLVQ 350
>gi|298492637|ref|YP_003722814.1| DNA polymerase III subunits gamma and tau ['Nostoc azollae' 0708]
gi|298234555|gb|ADI65691.1| DNA polymerase III, subunits gamma and tau ['Nostoc azollae' 0708]
Length = 663
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 141/497 (28%), Positives = 240/497 (48%), Gaps = 24/497 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P++F +LVGQ + L+NA+ K+ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPKSFAELVGQEAITTTLTNAISSAKIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQPKP--CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC ++P P CG C+ C +G S ++ E+ N ++I +L++ + +Y
Sbjct: 63 NCLKSDKPTPIPCGVCDICQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P+ VVF+L ++ + IISRCQ+F F ++
Sbjct: 123 KVYVIDECHMLSTAAFNALLKTLEEPPKYVVFVLATTDPQRVLPTIISRCQRFDFRRIHL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L IASKE I I DA+ L+A S G LRDAE L+QL+L + V +LV
Sbjct: 183 EAMVKHLGAIASKENINICLDAVTLVAQMSQGGLRDAESLLDQLALFPGEVIPDQVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTV-KNLRVIMETGVEPLALMSQLATVITDILAGSYDFT 704
G +S++ L+ LLD A++ D V + R I++ G EPL ++ +A D+L
Sbjct: 243 GSVSEKDLLALLD-AITQDNAEIVLDSTRQILDRGREPLTILQNVAAFYRDLLIAKT--A 299
Query: 705 KDRHRRKFFRRQPLS-------KEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+R +Q + K ++ + + + L AE QL+ + WL LL L
Sbjct: 300 PNRQDLVACTQQTWTTLINFAHKLDITTILRGQQHLRTAEVQLKNTTQPRLWLEVTLLGL 359
Query: 758 APDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVRLENFHA 817
P + P + + + ++P + + N + P + H
Sbjct: 360 LPSAN-IQPQALSVSQVLNTPAVSPPSYPAAFSPPPAYTQTNHNSQISSPTPAYTQKNH- 417
Query: 818 ENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNR 877
NS + +S + +P +A + V S+ + +IW +VL
Sbjct: 418 -NSAP-------QTVSSPAPEPVYTPPPPAVTNP-TAPAQEVVTESQYDLTQIWQQVLAN 468
Query: 878 IQNNGTKEFLYREGKLI 894
+Q +E L + L+
Sbjct: 469 LQPPSRREMLRQMSNLL 485
>gi|428205008|ref|YP_007100634.1| DNA polymerase III subunits gamma and tau [Chroococcidiopsis
thermalis PCC 7203]
gi|428013127|gb|AFY91243.1| DNA polymerase III, subunits gamma and tau [Chroococcidiopsis
thermalis PCC 7203]
Length = 444
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 117/352 (33%), Positives = 200/352 (56%), Gaps = 8/352 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
KY P+T LVGQ+++A LSNA+ K+ Y+F GP GTGKTS ARI A++LNCQS
Sbjct: 10 KYRPQTLAQLVGQDIIATTLSNAINGGKIAPAYLFVGPRGTGKTSTARILAKSLNCQSAN 69
Query: 474 QPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
Q PCG C SC + S ++ E+ N E+I ++++ + S+Y++ + D
Sbjct: 70 QATTTPCGECQSCRAIASSHSLDVNELDAASNSGVENIREIVERASFAPVESRYKVIILD 129
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+C +LS +++++ K +++ P VVF+L ++ + +P IISRCQ+F F ++ I
Sbjct: 130 ECHSLSQAAFNSLLKTLEQPPSNVVFVLCTTEVHKVPLTIISRCQRFDFRRIDTKTITEH 189
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDE 651
LQ IA E I+I +AL+L+A S G LRDA L+QLS +G +I+ V + G + +
Sbjct: 190 LQAIAVAEQIDITPEALQLVAQTSHGCLRDALTLLDQLSNIGTQIADVQVYLMAGTVPEP 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA--GSYDFTKDRHR 709
+L+DLLD + + + ++ ++E G +P + + ++ D+L D T+ +
Sbjct: 250 ELLDLLDNISTGNVTACCRIIQKLVEQGKDPSLVYLDILRILKDLLVIKTCPDATELEWQ 309
Query: 710 RKFFRRQPLSKEEMEK---LRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ LS + K ++ A+K L+ + +Q++ + +L WL +L+LA
Sbjct: 310 ATEKWERLLSLVQHWKAISIQDAIKLLNSSSRQMKQQSSQL-WLEVTILELA 360
>gi|104774441|ref|YP_619421.1| DNA polymerase III, subunit gamma/tau [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|103423522|emb|CAI98424.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
Length = 607
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 196/354 (55%), Gaps = 11/354 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF D+VGQ + L N+++R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L++ +PC C++C++ D+G +I E+ N + I DLLD + + +Y++
Sbjct: 63 NCLNLQEGEPCNECSNCLAADQGAMPDIIEMDAASNNSVDEIRDLLDKVHYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F + +
Sbjct: 123 YIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRFSNEA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +EG+E + ALK+IA +DG +RDA L+Q LS + E+ G
Sbjct: 183 MVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKSSVRYEDALEVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
+ E++ LL L+ D+ + + ++ G +++++ ++ + G +
Sbjct: 243 FAAQEQVEKLLLALLNGDSQMALDLAKSAIQDGASAQNILNEIISLTVQAMLFTKTGQGE 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
F D ++ ++ P ++ Q + ++A LR +N + L L+Q
Sbjct: 303 FLTDDFAQEIAQQSP------DRFSQIIDQANDALGSLRFTNQQQIPLEVFLVQ 350
>gi|385816214|ref|YP_005852605.1| DNA polymerase III subunit gamma/tau [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
gi|325126251|gb|ADY85581.1| DNA polymerase III subunit gamma/tau [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
Length = 606
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 196/354 (55%), Gaps = 11/354 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF D+VGQ + L N+++R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L++ +PC C++C++ D+G +I E+ N + I DLLD + + +Y++
Sbjct: 63 NCLNLQEGEPCNECSNCLAADQGAMPDIIEMDAASNNSVDEIRDLLDKVHYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F + +
Sbjct: 123 YIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRFSNEA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +EG+E + ALK+IA +DG +RDA L+Q LS + E+ G
Sbjct: 183 MVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKSSVRYEDALEVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
+ E++ LL L+ D+ + + ++ G +++++ ++ + G +
Sbjct: 243 FAAQEQVEKLLLALLNGDSQMALDLAKSAIQDGASAQNILNEIISLTVQAMLFTKTGQGE 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
F D ++ ++ P ++ Q + ++A LR +N + L L+Q
Sbjct: 303 FLTDDFAQEIAQQSP------DRFSQIIDQANDALGSLRFTNQQQIPLEVFLVQ 350
>gi|116514540|ref|YP_813446.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|116093855|gb|ABJ59008.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
Length = 592
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/360 (30%), Positives = 199/360 (55%), Gaps = 11/360 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF D+VGQ + L N+++R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L++ +PC C++C++ D+G +I E+ N + I DLLD + + +Y++
Sbjct: 63 NCLNLQEGEPCNECSNCLAADQGAMPDIIEMDAASNNSVDEIRDLLDKVHYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F + +
Sbjct: 123 YIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRFSNEA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +EG+E + ALK+IA +DG +RDA L+Q LS + E+ G
Sbjct: 183 MVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKSSVRYEDALEVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
+ E++ LL L+ D+ + + ++ G +++++ ++ + G +
Sbjct: 243 FAAQEQVEKLLLALLNGDSQMALDLAKSAIQDGASAQNILNEIISLTVQAMLFTKTGQGE 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
F D ++ ++ P ++ Q + ++A LR +N + L L+Q + +Q
Sbjct: 303 FLTDDFAQEIAQQSP------DRFSQIIDQANDALGSLRFTNQQQIPLEVFLVQASQKRQ 356
>gi|67923223|ref|ZP_00516710.1| DNA-directed DNA polymerase [Crocosphaera watsonii WH 8501]
gi|67854954|gb|EAM50226.1| DNA-directed DNA polymerase [Crocosphaera watsonii WH 8501]
Length = 687
Score = 194 bits (493), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 122/359 (33%), Positives = 199/359 (55%), Gaps = 7/359 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ +A L+NA+ +++ Y+F GP GTGKTS ARI A++L
Sbjct: 4 YEPLHHKYRPQTFADLVGQEAIATTLNNAIASQRIAPAYLFTGPRGTGKTSSARILAKSL 63
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC ++E P PCG C C + RG + ++ E+ N ++I ++++ + +Y
Sbjct: 64 NCLAVEAPTASPCGECEVCRAIARGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRY 123
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RV+F+L ++ + IISRCQ+F + ++
Sbjct: 124 KVYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTIISRCQRFDYRRIPL 183
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L IA KE IEI+ +AL L+A ++G LRDAE L+QLSLL I+ V +LV
Sbjct: 184 EAMVSHLTVIAQKENIEIEPEALTLVAQIANGGLRDAESLLDQLSLLSGSITSEKVWDLV 243
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-AGSYDFT 704
G + + L+ LL S + +++ R +M+ G EPL ++ LA ++L A +
Sbjct: 244 GAVPERDLLSLLKAINSNNPEIVIESCRKLMDRGREPLVVLQNLAGFYLNLLIAKTAPER 303
Query: 705 KDRHRRKFFRRQPLSKE----EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759
D L E + E + + + L E+E QL+ + WL LL L P
Sbjct: 304 SDLVAVTSTTWDDLCTEANQWQTETILRGQQKLKESEVQLKNTTQPRLWLEVTLLGLLP 362
>gi|416396022|ref|ZP_11686398.1| DNA polymerase III subunits gamma and Tau [Crocosphaera watsonii WH
0003]
gi|357263028|gb|EHJ12088.1| DNA polymerase III subunits gamma and Tau [Crocosphaera watsonii WH
0003]
Length = 687
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 122/359 (33%), Positives = 199/359 (55%), Gaps = 7/359 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ +A L+NA+ +++ Y+F GP GTGKTS ARI A++L
Sbjct: 4 YEPLHHKYRPQTFADLVGQEAIATTLNNAIASQRIAPAYLFTGPRGTGKTSSARILAKSL 63
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC ++E P PCG C C + RG + ++ E+ N ++I ++++ + +Y
Sbjct: 64 NCLAVEAPTASPCGECEVCRAIARGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRY 123
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RV+F+L ++ + IISRCQ+F + ++
Sbjct: 124 KVYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTIISRCQRFDYRRIPL 183
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L IA KE IEI+ +AL L+A ++G LRDAE L+QLSLL I+ V +LV
Sbjct: 184 EAMVSHLTVIAQKENIEIEPEALTLVAQIANGGLRDAESLLDQLSLLSGSITSEKVWDLV 243
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-AGSYDFT 704
G + + L+ LL S + +++ R +M+ G EPL ++ LA ++L A +
Sbjct: 244 GAVPERDLLSLLKAINSNNPEIVIESCRKLMDRGREPLVVLQNLAGFYLNLLIAKTAPER 303
Query: 705 KDRHRRKFFRRQPLSKE----EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759
D L E + E + + + L E+E QL+ + WL LL L P
Sbjct: 304 SDLVAVTSTTWDDLCTEANQWQTETILRGQQKLKESEVQLKNTTQPRLWLEVTLLGLLP 362
>gi|428315131|ref|YP_007151278.1| DNA polymerase III subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
gi|428245166|gb|AFZ10948.1| DNA polymerase III, subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
Length = 471
Score = 194 bits (492), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 123/364 (33%), Positives = 197/364 (54%), Gaps = 22/364 (6%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L KY P+ ++LVGQ+ + L+NA+ K+ Y+F GP GTGKTS ARI A++L
Sbjct: 2 YQPLHLKYRPKNLQELVGQDTIKTTLTNAITDSKIARAYLFTGPRGTGKTSTARILAKSL 61
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + ++P PCG C++C + D + ++ E+ + + +L+++ + S+Y
Sbjct: 62 NCLNSKKPTATPCGECSNCKTIDSSSNLDVTEIDAASHNGVDDARELIEHSNFAPAMSRY 121
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
RI++ D+C LS + +A+ K ++ P VVFIL ++ + IISRCQ F F +
Sbjct: 122 RIWILDECHQLSTSAQNALLKCLEEPPAHVVFILCTTEAHKVLPTIISRCQTFNFRALPV 181
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
I+ LQ I+ E I I D+++ IA SDG LRDA L QLSLL I++ V E+
Sbjct: 182 DAIVGQLQKISDAESIAITIDSMRAIARISDGGLRDALQLLSQLSLLHSEITLTQVAEVS 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-------- 697
G IS++ + LL S DT++ + + R ++++G P ++S L TV+ D+L
Sbjct: 242 GSISEQDSIALLKAIYSGDTLSVLLSARTLIDSGKTPKIILSSLLTVMRDLLVVKSTRQC 301
Query: 698 ----AGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAA 753
AG+ +++ R + E + A L ++E QLR S + TWL
Sbjct: 302 QNLIAGAVSYSQLRSLALHL--------DFETINAACTQLQKSEIQLRTSTNAATWLEVC 353
Query: 754 LLQL 757
LL L
Sbjct: 354 LLNL 357
>gi|218246891|ref|YP_002372262.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 8801]
gi|218167369|gb|ACK66106.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
8801]
Length = 648
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 123/359 (34%), Positives = 197/359 (54%), Gaps = 7/359 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ +A L+NA+ +++ Y+F GP GTGKTS ARI A++L
Sbjct: 4 YEPLHHKYRPQTFADLVGQEAIATTLTNAIAAKRIAPAYLFTGPRGTGKTSSARILAKSL 63
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + P PCG C C + RG + ++ E+ N ++I ++++ + +Y
Sbjct: 64 NCLAFSDPTATPCGKCEVCRAITRGSALDVIEIDAASNTGVDNIREIIERAQFAPVQCRY 123
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RV+F+L ++ + IISRCQ+F + ++
Sbjct: 124 KVYVIDECHMLSVAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIPL 183
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
A ++ L IA +E I+I +DAL L+A ++G LRDAE L+QLSLL I+ V ELV
Sbjct: 184 AAMVSHLGKIAQQETIDIAQDALILVAQIANGGLRDAESLLDQLSLLSGTITTDKVWELV 243
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-AGSYDFT 704
G + ++ L+ LL S + + R +M G EPL ++ LA ++L A +
Sbjct: 244 GAVPEQDLLLLLQAIASNNAELVIDRCRHLMNRGREPLVVLQNLAGFYLNLLIAKTAPNR 303
Query: 705 KDRHRRKFFRRQPLSKE----EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759
D Q L E +E + Q + L ++E QL+ + WL LL L P
Sbjct: 304 PDMVAVTAPTWQALCNEAHQWNLETILQGQQRLKDSEFQLKNTTQPRLWLEVTLLSLLP 362
>gi|255026196|ref|ZP_05298182.1| hypothetical protein LmonocytFSL_07310 [Listeria monocytogenes FSL
J2-003]
Length = 446
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 113/390 (28%), Positives = 199/390 (51%), Gaps = 38/390 (9%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P++F+D+VGQ V + L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C C G ++ E+ N E I D+ + + + ++Y++
Sbjct: 63 NCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
II L++I +E I D+ AL ++A ++G +RDA L+Q+ G + ++V E+ G
Sbjct: 183 IIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ L L+ A D + L ++ G +P+ L+ L D+L
Sbjct: 243 SVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVL--------- 293
Query: 707 RHRRKFFRRQPLSKEEME------------------KLRQALKTLSEAEKQLRMSNDKLT 748
+++ P +E ME K+ + +K L+ A++Q+R SN
Sbjct: 294 -----LYQKAPNLEETMERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGI 348
Query: 749 WLTAALLQLAPDQQYV-----LPSSSADTS 773
++ AL+QL Q V +P+ +A S
Sbjct: 349 YVEVALVQLTQAGQSVAGGGNVPADAASGS 378
>gi|407010067|gb|EKE25066.1| hypothetical protein ACD_5C00307G0001, partial [uncultured
bacterium]
Length = 379
Score = 193 bits (490), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 112/311 (36%), Positives = 179/311 (57%), Gaps = 15/311 (4%)
Query: 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC 469
+L +KY P TF D++GQ + Q LSNA+ ++G Y+F GP GTGKT+ ARIFAR++NC
Sbjct: 4 SLYRKYRPATFNDVIGQTHIVQTLSNAITHGRIGHAYLFTGPRGTGKTTMARIFARSVNC 63
Query: 470 QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ--YRI 527
Q PC C+ C + G+S +I E+ N ++I +L +N+ PPSQ Y+I
Sbjct: 64 QQPNGAIPCQECDVCKNIIEGRSLDIFEIDAASNTGVDNIRELRENV--KFPPSQAKYKI 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P +FIL ++ + +P IISRCQ++ F ++
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPAHAIFILATTEIHKVPETIISRCQRYDFTRLSLEH 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L IA EG+EIDK AL++IA ++G +RDAE L Q +SL ++I+ V+E++G
Sbjct: 182 IVKKLSKIAKSEGVEIDKQALEMIAISAEGGMRDAESLLGQVMSLEDKKITAKEVEEILG 241
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEP-------LALMSQLATVITD-ILA 698
+ L D+ L D+ N + + + + G + L + QL V D LA
Sbjct: 242 TTRRKSLEDMAKFLLEKDSTNAISLINELSQDGYDLDVFNKSFLNYLRQLMLVSVDNKLA 301
Query: 699 G--SYDFTKDR 707
SY+ TK++
Sbjct: 302 KLFSYELTKEQ 312
>gi|188584657|ref|YP_001916202.1| DNA polymerase III subunits gamma and tau [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179349344|gb|ACB83614.1| DNA polymerase III, subunits gamma and tau [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 589
Score = 193 bits (490), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 105/326 (32%), Positives = 179/326 (54%), Gaps = 17/326 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +++ P+ FRDLVGQ V L NA+ + ++ Y+F GP GTGKTS A++FA+AL
Sbjct: 3 YQALYRQWRPKYFRDLVGQEHVVTTLKNAISQSRISHAYLFSGPRGTGKTSVAKVFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PCG C+ CI HDRG +I E+ N + I ++ D++ S Y++
Sbjct: 63 NCDHSQDNEPCGQCSRCIEHDRGTFMDILEIDAASNRGIDEIREIRDHVAYSPSEGNYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+FIL ++ LP ++SRCQ+F F ++ +
Sbjct: 123 YIVDEVHMLTTEAFNALLKTLEEPPDYVIFILATTEPHKLPMTVLSRCQRFDFYRLSTSK 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL--GQRISVPLVQEL 644
I LQ + + + K++L +IA +SDG +RDA L+Q LS L G+++ V V E+
Sbjct: 183 IEKQLQNVIDSKNLSATKESLSIIAKKSDGGMRDALSLLDQSLSFLGSGEQLKVDHVLEV 242
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA------ 698
G +S++ DLL D + ++ + ++G + ++ L + D+L
Sbjct: 243 TGTVSEDTFYDLLMALKEGDLAQILNIVQQLSDSGKDFGQFLNDLIVYLRDLLLFKLKGP 302
Query: 699 ------GSYDFTKDRHRRKFFRRQPL 718
GS D K H K+F + L
Sbjct: 303 SDQLLWGSVDSVKKLH--KYFTKDEL 326
>gi|16804741|ref|NP_466226.1| hypothetical protein lmo2704 [Listeria monocytogenes EGD-e]
gi|254827269|ref|ZP_05231956.1| dnaX [Listeria monocytogenes FSL N3-165]
gi|255028847|ref|ZP_05300798.1| hypothetical protein LmonL_06056 [Listeria monocytogenes LO28]
gi|284800410|ref|YP_003412275.1| hypothetical protein LM5578_0156 [Listeria monocytogenes 08-5578]
gi|284993596|ref|YP_003415364.1| hypothetical protein LM5923_0156 [Listeria monocytogenes 08-5923]
gi|386051687|ref|YP_005969678.1| DNA polymerase III subunits gamma and Tau [Listeria monocytogenes
FSL R2-561]
gi|386054893|ref|YP_005972451.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
Finland 1998]
gi|404285213|ref|YP_006686110.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC2372]
gi|404414782|ref|YP_006700369.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC7179]
gi|405759769|ref|YP_006689045.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC2479]
gi|16412204|emb|CAD00917.1| dnaX [Listeria monocytogenes EGD-e]
gi|258599651|gb|EEW12976.1| dnaX [Listeria monocytogenes FSL N3-165]
gi|284055972|gb|ADB66913.1| hypothetical protein LM5578_0156 [Listeria monocytogenes 08-5578]
gi|284059063|gb|ADB70002.1| hypothetical protein LM5923_0156 [Listeria monocytogenes 08-5923]
gi|346425533|gb|AEO27058.1| DNA polymerase III subunits gamma and Tau [Listeria monocytogenes
FSL R2-561]
gi|346647544|gb|AEO40169.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
Finland 1998]
gi|404234715|emb|CBY56118.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC2372]
gi|404237651|emb|CBY59053.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC2479]
gi|404240481|emb|CBY61882.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC7179]
Length = 579
Score = 192 bits (489), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 113/390 (28%), Positives = 199/390 (51%), Gaps = 38/390 (9%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P++F+D+VGQ V + L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C C G ++ E+ N E I D+ + + + ++Y++
Sbjct: 63 NCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
II L++I +E I D+ AL ++A ++G +RDA L+Q+ G + ++V E+ G
Sbjct: 183 IIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ L L+ A D + L ++ G +P+ L+ L D+L
Sbjct: 243 SVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVL--------- 293
Query: 707 RHRRKFFRRQPLSKEEME------------------KLRQALKTLSEAEKQLRMSNDKLT 748
+++ P +E ME K+ + +K L+ A++Q+R SN
Sbjct: 294 -----LYQKAPNLEETMERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGI 348
Query: 749 WLTAALLQLAPDQQYV-----LPSSSADTS 773
++ AL+QL Q V +P+ +A S
Sbjct: 349 YVEVALVQLTQAGQSVAGGGNVPADAASGS 378
>gi|352096779|ref|ZP_08957535.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp. WH
8016]
gi|351676001|gb|EHA59159.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp. WH
8016]
Length = 652
Score = 192 bits (488), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 114/349 (32%), Positives = 194/349 (55%), Gaps = 19/349 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L KY P+ F LVGQ +A L +A+ ++ Y+F GP GTGKTS ARI AR+L
Sbjct: 5 YQPLHHKYRPQRFDQLVGQEAIAATLGHALTSGRIAPAYLFSGPRGTGKTSSARILARSL 64
Query: 468 NCQSLE--QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S + P+PCG C C + RG + ++ E+ N ++I DL++ + +++
Sbjct: 65 NCLSHDGPTPQPCGTCELCTTIARGTALDVIEIDAASNTGVDNIRDLIERSRFAPVQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P +VVF+L ++ + I+SRCQ+F F ++
Sbjct: 125 KVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIPL 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L WIA +E I I +AL ++A R+ G LRDAE L+QLSLL I V +L+
Sbjct: 185 EALHQHLAWIAEQESIPIQPEALHVVAQRAQGGLRDAESLLDQLSLLPGPIKADAVWDLL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD--ILAGSYDF 703
G + +++L++L + + + ++ R +++ G +P A++ LA ++ D ++A + D
Sbjct: 245 GAVPEQELLNLTEALAEGEPLTLLEASRRLLDRGRDPGAVLQGLAGILRDLVLMAVAPD- 303
Query: 704 TKDRHRRKFFRRQPLSKEEMEKLRQAL---------KTLSEAEKQLRMS 743
R + P +E++ L Q L L +E+QLR S
Sbjct: 304 -----RPELTGVSPQFREQLPALAQRLGRQRLLHWQAQLKGSEQQLRQS 347
>gi|428314877|ref|YP_007118895.1| DNA polymerase III subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
gi|428244912|gb|AFZ10696.1| DNA polymerase III, subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
Length = 471
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/360 (34%), Positives = 192/360 (53%), Gaps = 14/360 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L KY P+ ++LVGQ+ + L+NA+ K+ Y+F GP GTGKTS ARI A++L
Sbjct: 2 YQPLHLKYRPKNLQELVGQDTIKTTLTNAITSDKIAQAYLFTGPRGTGKTSTARILAKSL 61
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + ++P PCG C+SC + D S ++ E+ + + +L+ + + S+Y
Sbjct: 62 NCLNSKKPTATPCGECSSCKTIDSCSSLDVTEIDAASHNGVDDARELIQHSNFAPALSRY 121
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
RI++ D+C LS + +A+ K ++ P VVFIL ++ + IISRCQ F F +
Sbjct: 122 RIWILDECHQLSTSAQNALLKCLEEPPAHVVFILCTTEAHKVLPTIISRCQTFNFRALSV 181
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
I+ L I+S E IEI +A++ IA DG LRDA L QLSLL I++ V E+
Sbjct: 182 DAIVGQLHKISSAESIEIASEAMRAIARTCDGGLRDALQLLSQLSLLNSEITLTQVAEVS 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS++ + LL S DT++ +++ R ++++G P ++S L + D+L
Sbjct: 242 GSISEQDSIALLKAIHSGDTLSVLQSSRTLIDSGKTPKLILSSLLAAMRDLLI----VKS 297
Query: 706 DRHRRKFFR--------RQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
RH + R + E + A L ++E QLR S + TWL LL L
Sbjct: 298 TRHCQNLIAGPVGYSQLRSLALHLDFETIDAACTQLQKSEFQLRTSTNAATWLEVCLLNL 357
>gi|319789969|ref|YP_004151602.1| DNA polymerase III, subunits gamma and tau [Thermovibrio
ammonificans HB-1]
gi|317114471|gb|ADU96961.1| DNA polymerase III, subunits gamma and tau [Thermovibrio
ammonificans HB-1]
Length = 460
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/384 (29%), Positives = 199/384 (51%), Gaps = 32/384 (8%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
+ +KY P+ F +VGQ+ + + L NA+ + Y+F GP G GKT+ ARI A+ALNC+
Sbjct: 6 IPRKYRPQRFDQVVGQDFITKTLKNAIKSGRFAHAYIFAGPRGVGKTTTARIVAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ +PC C C+ +G ++ EV N + I +L +++ + + ++++
Sbjct: 66 NPTDGEPCNSCPQCLEISKGAHPDVIEVDAATNRGIDQIRELRESVHYAPARGKRKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P VFIL ++ +D +P I+SRCQKF F K+ I+
Sbjct: 126 DEFHMLTKEAFNALLKTLEEPPEHAVFILATTEIDKIPPTILSRCQKFLFRKVPRELIVE 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLIS 649
TL+ I EG+E D++AL+LIA S+G +RDAE L+Q ++L G R+ +V E +G+++
Sbjct: 186 TLERICRSEGVEFDREALELIAVASEGCIRDAESLLDQAIALGGGRVDSKVVSEFLGVLT 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR 709
+L +LL A D ++ + E G PL ++ QL + + +
Sbjct: 246 GRELRNLLQTAFKGDKAELRTQVKRLEELGYNPLFVVKQLLSWLEE-------------- 291
Query: 710 RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ------- 762
+ FR S+EE+ A + LSE + L+ T L L +L+ +
Sbjct: 292 -ELFRTTTFSEEEV---NAAFQLLSECYRSLQNHPQPYTALLFYLFRLSYFKDVKRLSEL 347
Query: 763 ------YVLPSSSADTSFSHSPLD 780
+P+ S + +H PL+
Sbjct: 348 LSGGISLTVPAQSPEKKTAHDPLN 371
>gi|254931024|ref|ZP_05264383.1| DNA polymerase III [Listeria monocytogenes HPB2262]
gi|405751049|ref|YP_006674515.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
ATCC 19117]
gi|417318743|ref|ZP_12105308.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
J1-220]
gi|293582570|gb|EFF94602.1| DNA polymerase III [Listeria monocytogenes HPB2262]
gi|328469564|gb|EGF40505.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
J1-220]
gi|404220249|emb|CBY71613.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
ATCC 19117]
Length = 579
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/390 (28%), Positives = 199/390 (51%), Gaps = 38/390 (9%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P++F+D+VGQ V + L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C C G ++ E+ N E I D+ + + + ++Y++
Sbjct: 63 NCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
II L++I +E I D+ AL ++A ++G +RDA L+Q+ G + ++V E+ G
Sbjct: 183 IIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ L L+ A D + L ++ G +P+ L+ L D+L
Sbjct: 243 SVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVL--------- 293
Query: 707 RHRRKFFRRQPLSKEEME------------------KLRQALKTLSEAEKQLRMSNDKLT 748
+++ P +E +E K+ + +K L+ A++Q+R SN
Sbjct: 294 -----LYQKAPNLEETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGI 348
Query: 749 WLTAALLQLAPDQQYV-----LPSSSADTS 773
++ AL+QL Q V +P+ +A S
Sbjct: 349 YVEVALVQLTQASQSVAGGGNVPADAASGS 378
>gi|424715523|ref|YP_007016238.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes
serotype 4b str. LL195]
gi|424014707|emb|CCO65247.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes
serotype 4b str. LL195]
Length = 614
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/390 (28%), Positives = 199/390 (51%), Gaps = 38/390 (9%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P++F+D+VGQ V + L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 38 YQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAI 97
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C C G ++ E+ N E I D+ + + + ++Y++
Sbjct: 98 NCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKV 157
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ D
Sbjct: 158 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQD 217
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
II L++I +E I D+ AL ++A ++G +RDA L+Q+ G + ++V E+ G
Sbjct: 218 IIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVDDALEITG 277
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ L L+ A D + L ++ G +P+ L+ L D+L
Sbjct: 278 SVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVL--------- 328
Query: 707 RHRRKFFRRQPLSKEEME------------------KLRQALKTLSEAEKQLRMSNDKLT 748
+++ P +E +E K+ + +K L+ A++Q+R SN
Sbjct: 329 -----LYQKAPNLEETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGI 383
Query: 749 WLTAALLQLAPDQQYV-----LPSSSADTS 773
++ AL+QL Q V +P+ +A S
Sbjct: 384 YVEVALIQLTQAGQSVAGGGNVPADAASGS 413
>gi|257059952|ref|YP_003137840.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 8802]
gi|256590118|gb|ACV01005.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
8802]
Length = 650
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/359 (33%), Positives = 196/359 (54%), Gaps = 7/359 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ +A L+NA+ +++ Y+F GP GTGKTS ARI A++L
Sbjct: 4 YEPLHHKYRPQTFADLVGQEAIATTLTNAIAAKRIAPAYLFTGPRGTGKTSSARILAKSL 63
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + P PCG C C + RG + ++ E+ N ++I ++++ + +Y
Sbjct: 64 NCLAFSDPTATPCGKCEVCRAIARGSALDVIEIDAASNTGVDNIREIIERAQFAPVQCRY 123
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RV+F+L ++ + IISRCQ+F + ++
Sbjct: 124 KVYVIDECHMLSVAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIPL 183
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L IA +E I+I +DAL L+A ++G LRDAE L+QLSLL I+ V ELV
Sbjct: 184 DAMVNHLSKIAQQETIDIAQDALILVAQIANGGLRDAESLLDQLSLLSGTITTDKVWELV 243
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-AGSYDFT 704
G + ++ L+ LL S + + R +M G EPL ++ LA ++L A +
Sbjct: 244 GAVPEQDLLLLLQAIASNNAELVIDRCRHLMNRGREPLVVLQNLAGFYLNLLIAKTAPNR 303
Query: 705 KDRHRRKFFRRQPLSKE----EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759
D Q L E +E + Q + L ++E QL+ + WL LL L P
Sbjct: 304 PDMVAVTAPTWQALCNEAHQWNLETILQGQQRLKDSEFQLKNTTQPRLWLEVTLLSLLP 362
>gi|16801912|ref|NP_472180.1| hypothetical protein lin2852 [Listeria innocua Clip11262]
gi|16415387|emb|CAC98078.1| dnaX [Listeria innocua Clip11262]
Length = 579
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 192/359 (53%), Gaps = 13/359 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P++F+D+VGQ V + L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C C G ++ E+ N E I D+ + + + ++Y++
Sbjct: 63 NCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
II L++I +E I D+ AL ++A ++G +RDA L+Q+ G + ++V E+ G
Sbjct: 183 IIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ L L+ A D + L ++ G +P+ L+ L D+L + K
Sbjct: 243 SVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLL----YQKA 298
Query: 707 RHRRKFFRRQPLSKEEME--------KLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ + R + ++ + K+ + +K L+ A++Q+R SN ++ AL+QL
Sbjct: 299 PNLEETLERALIDEDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQL 357
>gi|75812737|ref|YP_320354.1| ATPase [Anabaena variabilis ATCC 29413]
gi|75705493|gb|ABA25165.1| ATPase [Anabaena variabilis ATCC 29413]
Length = 429
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/361 (32%), Positives = 197/361 (54%), Gaps = 11/361 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L KY P+T +++GQ + + L NA+ +K+ Y+F GP GTGKTS ARI A++L
Sbjct: 2 YQPLHLKYRPQTLSEVIGQEHIVRTLINAIALQKIAPAYLFSGPKGTGKTSTARIIAKSL 61
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NCQS +P KPCG CNSC S ++ E+ N E I +L+ + + ++
Sbjct: 62 NCQSSNEPTTKPCGECNSCKGITASSSVDVTELDAASNSGVELIRELISTIQFAPVEGRF 121
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+IF+ D+C LS SW A+ K ++ PR VVFI ++ L +P I+SRCQKF F ++
Sbjct: 122 KIFIIDECHALSSQSWQALLKTIESPPRHVVFIFCTTELHKVPETIVSRCQKFDFKRVPV 181
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQEL 644
+ + L+ I+ +E I I A+ +A + G LRD+ L+QL+LLG + I+ V EL
Sbjct: 182 SLVASYLEQISHQESINIAPSAVTAVAKANKGHLRDSLKLLDQLTLLGEEEITSNWVWEL 241
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT 704
G IS+ L+ + + + + L+ +E+G +P A+ + L + + D+L +
Sbjct: 242 SGTISEYDLLTACENIIKGEITGNLGILQDWIESGKQPTAIHTSLVSFLKDLLVCKTN-P 300
Query: 705 KDRHRRK-----FFRRQPLSK-EEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
RH + + + +S+ ++++R A+ L A + L D WL A L+++
Sbjct: 301 NGRHLTQLEEDTWEKLVSISQLWNIDQIRNAIAILM-ARQNLMRDEDAHLWLEATLIEIV 359
Query: 759 P 759
P
Sbjct: 360 P 360
>gi|46908883|ref|YP_015272.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
serotype 4b str. F2365]
gi|226225256|ref|YP_002759363.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|386733396|ref|YP_006206892.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
07PF0776]
gi|405753917|ref|YP_006677382.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC2378]
gi|406705445|ref|YP_006755799.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
L312]
gi|46882156|gb|AAT05449.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
serotype 4b str. F2365]
gi|225877718|emb|CAS06432.1| Putative DNA polymerase III (gamma and tau subunits) [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|384392154|gb|AFH81224.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
07PF0776]
gi|404223117|emb|CBY74480.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC2378]
gi|406362475|emb|CBY68748.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
L312]
Length = 579
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/390 (28%), Positives = 199/390 (51%), Gaps = 38/390 (9%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P++F+D+VGQ V + L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C C G ++ E+ N E I D+ + + + ++Y++
Sbjct: 63 NCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
II L++I +E I D+ AL ++A ++G +RDA L+Q+ G + ++V E+ G
Sbjct: 183 IIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVDDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ L L+ A D + L ++ G +P+ L+ L D+L
Sbjct: 243 SVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVL--------- 293
Query: 707 RHRRKFFRRQPLSKEEME------------------KLRQALKTLSEAEKQLRMSNDKLT 748
+++ P +E +E K+ + +K L+ A++Q+R SN
Sbjct: 294 -----LYQKAPNLEETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGI 348
Query: 749 WLTAALLQLAPDQQYV-----LPSSSADTS 773
++ AL+QL Q V +P+ +A S
Sbjct: 349 YVEVALIQLTQAGQSVAGGGNVPADAASGS 378
>gi|405756835|ref|YP_006680299.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC2540]
gi|404226035|emb|CBY77397.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC2540]
Length = 579
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/390 (28%), Positives = 199/390 (51%), Gaps = 38/390 (9%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P++F+D+VGQ V + L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C C G ++ E+ N E I D+ + + + ++Y++
Sbjct: 63 NCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
II L++I +E I D+ AL ++A ++G +RDA L+Q+ G + ++V E+ G
Sbjct: 183 IIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ L L+ A D + L ++ G +P+ L+ L D+L
Sbjct: 243 SVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVL--------- 293
Query: 707 RHRRKFFRRQPLSKEEME------------------KLRQALKTLSEAEKQLRMSNDKLT 748
+++ P +E +E K+ + +K L+ A++Q+R SN
Sbjct: 294 -----LYQKAPNLEETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGI 348
Query: 749 WLTAALLQLAPDQQYV-----LPSSSADTS 773
++ AL+QL Q V +P+ +A S
Sbjct: 349 YVEVALVQLTQAGQSVAGGGNVPADAASGS 378
>gi|47095511|ref|ZP_00233120.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
str. 1/2a F6854]
gi|254912955|ref|ZP_05262967.1| DNA polymerase III [Listeria monocytogenes J2818]
gi|254937336|ref|ZP_05269033.1| DNA polymerase III [Listeria monocytogenes F6900]
gi|386048439|ref|YP_005966771.1| DNA polymerase III gamma and tau [Listeria monocytogenes J0161]
gi|47016121|gb|EAL07045.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
str. 1/2a F6854]
gi|258609942|gb|EEW22550.1| DNA polymerase III [Listeria monocytogenes F6900]
gi|293590956|gb|EFF99290.1| DNA polymerase III [Listeria monocytogenes J2818]
gi|345535430|gb|AEO04871.1| DNA polymerase III gamma and tau [Listeria monocytogenes J0161]
Length = 579
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/390 (28%), Positives = 199/390 (51%), Gaps = 38/390 (9%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P++F+D+VGQ V + L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C C G ++ E+ N E I D+ + + + ++Y++
Sbjct: 63 NCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
II L++I +E I D+ AL ++A ++G +RDA L+Q+ G + ++V E+ G
Sbjct: 183 IIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ L L+ A D + L ++ G +P+ L+ L D+L
Sbjct: 243 SVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVL--------- 293
Query: 707 RHRRKFFRRQPLSKEEME------------------KLRQALKTLSEAEKQLRMSNDKLT 748
+++ P +E +E K+ + +K L+ A++Q+R SN
Sbjct: 294 -----LYQKAPNLEETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGI 348
Query: 749 WLTAALLQLAPDQQYV-----LPSSSADTS 773
++ AL+QL Q V +P+ +A S
Sbjct: 349 YVEVALVQLTQAGQSVAGGGNVPADAASGS 378
>gi|254824931|ref|ZP_05229932.1| DNA polymerase III [Listeria monocytogenes FSL J1-194]
gi|254851991|ref|ZP_05241339.1| DNA polymerase III [Listeria monocytogenes FSL R2-503]
gi|255520363|ref|ZP_05387600.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes
FSL J1-175]
gi|300763536|ref|ZP_07073534.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
FSL N1-017]
gi|404282278|ref|YP_006683176.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC2755]
gi|404288092|ref|YP_006694678.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|258605289|gb|EEW17897.1| DNA polymerase III [Listeria monocytogenes FSL R2-503]
gi|293594171|gb|EFG01932.1| DNA polymerase III [Listeria monocytogenes FSL J1-194]
gi|300515813|gb|EFK42862.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
FSL N1-017]
gi|404228913|emb|CBY50318.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC2755]
gi|404247021|emb|CBY05246.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
serotype 7 str. SLCC2482]
Length = 579
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/390 (28%), Positives = 199/390 (51%), Gaps = 38/390 (9%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P++F+D+VGQ V + L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C C G ++ E+ N E I D+ + + + ++Y++
Sbjct: 63 NCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
II L++I +E I D+ AL ++A ++G +RDA L+Q+ G + ++V E+ G
Sbjct: 183 IIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ L L+ A D + L ++ G +P+ L+ L D+L
Sbjct: 243 SVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVL--------- 293
Query: 707 RHRRKFFRRQPLSKEEME------------------KLRQALKTLSEAEKQLRMSNDKLT 748
+++ P +E +E K+ + +K L+ A++Q+R SN
Sbjct: 294 -----LYQKAPNLEETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGI 348
Query: 749 WLTAALLQLAPDQQYV-----LPSSSADTS 773
++ AL+QL Q V +P+ +A S
Sbjct: 349 YVEVALVQLTQAGQSVAGGGNVPADAASGS 378
>gi|440680875|ref|YP_007155670.1| DNA polymerase III, subunits gamma and tau [Anabaena cylindrica PCC
7122]
gi|428677994|gb|AFZ56760.1| DNA polymerase III, subunits gamma and tau [Anabaena cylindrica PCC
7122]
Length = 505
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/354 (33%), Positives = 185/354 (52%), Gaps = 22/354 (6%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L QKY P+T +LVGQ + AL+NA+ ++ Y+ G GTGKTS ARIFA++LNC
Sbjct: 6 LHQKYRPQTLAELVGQPYIKTALTNAIKHLQIAPAYLLTGSRGTGKTSTARIFAKSLNCL 65
Query: 471 SLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
+ ++P KPCG C SC S + S ++ E+ N + L++ + +YRIF
Sbjct: 66 NTKKPTDKPCGICQSCRSIETSNSLDVSEIDAASNNGVDDARALIERCTLAPIAGRYRIF 125
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+C L+ ++++A+ K ++ P VVFIL ++ + I+SRCQ F F + I
Sbjct: 126 ILDECHCLTGNAFNALLKCIEEPPPHVVFILCTTEQHKVLPTIVSRCQVFNFRTLSIQTI 185
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLI 648
+ L+ IA E I I+++AL IA SDG LRDA L Q SLL I+ V E+VG +
Sbjct: 186 VQHLRIIADAESISINEEALIAIARLSDGGLRDALQLLGQASLLDVDITAHHVMEIVGGV 245
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD------------I 696
++ +L+ +L + +T N ++ R ++++G P ++S L D +
Sbjct: 246 TEAELMAILQAISTNNTFNLLQVARELVDSGKTPKLIISNLLQTYRDLLIIKSAPQEQAL 305
Query: 697 LAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWL 750
L G T+ + K + E L +L L +AE LR + + WL
Sbjct: 306 LTGCVSHTQLKAFAKHWN--------FETLNLSLAELQKAENYLRYTVNAAVWL 351
>gi|315283987|ref|ZP_07871985.1| DNA polymerase III subunit gamma/tau [Listeria marthii FSL S4-120]
gi|313612362|gb|EFR86506.1| DNA polymerase III subunit gamma/tau [Listeria marthii FSL S4-120]
Length = 579
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/369 (28%), Positives = 191/369 (51%), Gaps = 33/369 (8%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P++F+D+VGQ V + L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C C G ++ E+ N E I D+ + + + ++Y++
Sbjct: 63 NCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
II L++I +E I D+ AL ++A ++G +RDA L+Q+ G + ++V E+ G
Sbjct: 183 IIARLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ L L+ A D + L ++ G +P+ L+ L D+L
Sbjct: 243 SVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVL--------- 293
Query: 707 RHRRKFFRRQPLSKEEME------------------KLRQALKTLSEAEKQLRMSNDKLT 748
+++ P +E +E K+ + +K L+ A++Q+R SN
Sbjct: 294 -----LYQKAPNLEETLERALIDDDFVALAKRADSLKVYEFVKILNAAQQQMRFSNHPGI 348
Query: 749 WLTAALLQL 757
++ AL+QL
Sbjct: 349 YVEVALVQL 357
>gi|427737214|ref|YP_007056758.1| DNA polymerase III subunits gamma and tau [Rivularia sp. PCC 7116]
gi|427372255|gb|AFY56211.1| DNA polymerase III, subunit gamma/tau [Rivularia sp. PCC 7116]
Length = 680
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/362 (32%), Positives = 203/362 (56%), Gaps = 13/362 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF +LVGQ +A L+NA+ K+ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPKTFAELVGQEAIATTLTNAIHTLKIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + ++P +PCG C+ C ++G + ++ E+ N ++I ++++ + +Y
Sbjct: 63 NCLNSDKPTSQPCGKCDVCQGINKGATLDVIEIDAASNTGVDNIREIIERAQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P VVF+L ++ + IISRCQ+F F ++
Sbjct: 123 KVYVVDECHMLSTQAFNALLKTLEEPPLHVVFVLATTDPQRVLPTIISRCQRFDFRRIPM 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L IA++E I+I K+A+ L+A S G LRDA+ L+QLSLL ++ V +LV
Sbjct: 183 DGMVQHLTTIAAQENIDITKEAVTLVAQVSQGGLRDAQSLLDQLSLLSGQVIPEKVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS----- 700
G +S++ L++LL +S ++ + + R I++ G EPL ++ LA+ D+L
Sbjct: 243 GSVSEQGLLELLKAIISDNSEAVIDSTRQILDRGREPLIILQNLASFYRDLLIAKTAPSR 302
Query: 701 ---YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
T+ + Q L E+ + Q + L AE Q++ + WL LL L
Sbjct: 303 NDLVACTQAMWKVLIDVAQSL---EISMILQGQQHLRAAEVQIKNTTQPRLWLEVTLLGL 359
Query: 758 AP 759
P
Sbjct: 360 LP 361
>gi|386045012|ref|YP_005963817.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes
10403S]
gi|404411956|ref|YP_006697544.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC5850]
gi|345538246|gb|AEO07686.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes
10403S]
gi|404231782|emb|CBY53186.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC5850]
Length = 579
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/390 (28%), Positives = 199/390 (51%), Gaps = 38/390 (9%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P++F+D+VGQ V + L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C C G ++ E+ N E I D+ + + + ++Y++
Sbjct: 63 NCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
II L++I +E I D+ AL ++A ++G +RDA L+Q+ G + ++V E+ G
Sbjct: 183 IIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ L L+ A D + L ++ G +P+ L+ L D+L
Sbjct: 243 SVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVL--------- 293
Query: 707 RHRRKFFRRQPLSKEEME------------------KLRQALKTLSEAEKQLRMSNDKLT 748
+++ P +E +E K+ + +K L+ A++Q+R SN
Sbjct: 294 -----LYQKAPNLEETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGI 348
Query: 749 WLTAALLQLAPDQQYV-----LPSSSADTS 773
++ AL+QL Q V +P+ +A S
Sbjct: 349 YVEVALVQLTQAGQSVAGGGNVPADAASGS 378
>gi|423101273|ref|ZP_17088977.1| DNA polymerase III, subunit gamma and tau, partial [Listeria
innocua ATCC 33091]
gi|370792059|gb|EHN59950.1| DNA polymerase III, subunit gamma and tau, partial [Listeria
innocua ATCC 33091]
Length = 616
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/369 (28%), Positives = 191/369 (51%), Gaps = 33/369 (8%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P++F+D+VGQ V + L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 40 YQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAI 99
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C C G ++ E+ N E I D+ + + + ++Y++
Sbjct: 100 NCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKV 159
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ D
Sbjct: 160 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQD 219
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
II L++I +E I D+ AL ++A ++G +RDA L+Q+ G + ++V E+ G
Sbjct: 220 IIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITG 279
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ L L+ A D + L ++ G +P+ L+ L D+L
Sbjct: 280 SVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVL--------- 330
Query: 707 RHRRKFFRRQPLSKEEME------------------KLRQALKTLSEAEKQLRMSNDKLT 748
+++ P +E +E K+ + +K L+ A++Q+R SN
Sbjct: 331 -----LYQKAPNLEETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGI 385
Query: 749 WLTAALLQL 757
++ AL+QL
Sbjct: 386 YVEVALVQL 394
>gi|78183642|ref|YP_376076.1| DNA-directed DNA polymerase [Synechococcus sp. CC9902]
gi|78167936|gb|ABB25033.1| DNA polymerase III, tau subunit [Synechococcus sp. CC9902]
Length = 625
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 194/347 (55%), Gaps = 15/347 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L KY P+ F LVGQ + L NA+ ++ Y+F GP GTGKTS ARI AR+L
Sbjct: 5 YQPLHHKYRPQRFDQLVGQEAITATLGNALTSNRIAPAYLFSGPRGTGKTSSARILARSL 64
Query: 468 NCQSLE--QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NCQ+ + P+PCG C+ C + G + ++ E+ N ++I +L++ + +++
Sbjct: 65 NCQNSDGPTPEPCGTCDLCRTIASGTALDVIEIDAASNTGVDNIRELIERSRFAPVQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P +VVF+L ++ + I+SRCQ+F F ++
Sbjct: 125 KVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIPL 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L WIA +E I I +A+ ++A RS G LRDAE L+QLSLL I V +L+
Sbjct: 185 DALEQHLTWIAEQESIAIQPEAIHVVAQRSQGGLRDAESLLDQLSLLPPPIEANAVWDLL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G + +++L+ L S++ V ++ R +++ G +P A++ LA V+ D++
Sbjct: 245 GAVPEQELLALAQAMTSSEPVALLEATRNLLDRGRDPGAVLQGLAGVLRDLVL----MAA 300
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQAL---------KTLSEAEKQLRMS 743
+R + P ++++ +L +++ L AE+QLR S
Sbjct: 301 APNRPELTGVSPQFRDQLPELAKSIGRTRLLQWQAQLRGAEQQLRQS 347
>gi|116874071|ref|YP_850852.1| DNA polymerase III subunits gamma and tau [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116742949|emb|CAK22073.1| DNA polymerase III, gamma and tau subunits [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 579
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/369 (28%), Positives = 191/369 (51%), Gaps = 33/369 (8%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P++F+D+VGQ V + L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C C G ++ E+ N E I D+ + + + ++Y++
Sbjct: 63 NCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
II L++I +E I D+ AL ++A ++G +RDA L+Q+ G + ++V E+ G
Sbjct: 183 IIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ L L+ A D + L ++ G +P+ L+ L D+L
Sbjct: 243 SVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVL--------- 293
Query: 707 RHRRKFFRRQPLSKEEME------------------KLRQALKTLSEAEKQLRMSNDKLT 748
+++ P +E +E K+ + +K L+ A++Q+R SN
Sbjct: 294 -----LYQKAPNLEETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGI 348
Query: 749 WLTAALLQL 757
++ AL+QL
Sbjct: 349 YVEVALVQL 357
>gi|422810741|ref|ZP_16859152.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
FSL J1-208]
gi|378750946|gb|EHY61537.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
FSL J1-208]
Length = 580
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/369 (28%), Positives = 191/369 (51%), Gaps = 33/369 (8%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P++F+D+VGQ V + L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C C G ++ E+ N E I D+ + + + ++Y++
Sbjct: 63 NCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
II L++I +E I D+ AL ++A ++G +RDA L+Q+ G + ++V E+ G
Sbjct: 183 IIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ L L+ A D + L ++ G +P+ L+ L D+L
Sbjct: 243 SVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVL--------- 293
Query: 707 RHRRKFFRRQPLSKEEME------------------KLRQALKTLSEAEKQLRMSNDKLT 748
+++ P +E +E K+ + +K L+ A++Q+R SN
Sbjct: 294 -----LYQKAPDLEETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGI 348
Query: 749 WLTAALLQL 757
++ AL+QL
Sbjct: 349 YVEVALVQL 357
>gi|218848112|ref|YP_002454681.1| DNA polymerase III subunit gamma/tau [Bacillus cereus G9842]
gi|218546243|gb|ACK98636.1| DNA polymerase III subunit gamma/tau [Bacillus cereus G9842]
Length = 548
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 114/371 (30%), Positives = 206/371 (55%), Gaps = 25/371 (6%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY P F +L+GQN + Q + NA+ K Y+F GP GTGKT+ A++ A +L
Sbjct: 2 YQALYRKYRPTNFSELIGQNHIKQTIQNALKLAKFSHAYMFTGPRGTGKTTIAKLIATSL 61
Query: 468 NCQSLE-QPKPCGFCNSCISHDRGKSR-NIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC+SL + +PC C+ C RG S ++ E+ N E I ++ + + + +Y
Sbjct: 62 NCESLNNEGEPCNECSQC-KAIRGNSHADVLEIDAASNNGVEQIREIREQVAYAPGTGKY 120
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ LS +++A+ K ++ P+ V+FIL ++ + +P IISRCQ+F F ++
Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKIPATIISRCQRFDFRRIGP 180
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPL----- 640
DII L+ +A KE ++I++DAL+L+ + G +RDA LSL+ Q I+
Sbjct: 181 RDIIERLRHVAIKEEVKIEEDALQLLGMLAQGGMRDA------LSLMDQTIAFATNETIT 234
Query: 641 ---VQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD-I 696
V E+VG IS EK+ + L +T+ + + ++ G EP+ L+ L + D +
Sbjct: 235 KDDVSEVVGRISIEKIEACIGDLLKGNTIEILNLINQVILNGKEPIYLLEDLIGYLRDLV 294
Query: 697 LAGSYDFTKDR-----HRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLT 751
++ +++ +D KF+ + L + E+ K++ ++ L+E + +++ SN+ L
Sbjct: 295 ISKAFEVKEDNITTAILNSKFY--ELLEEGEIHKMQMMIRKLTEVKNEMKFSNNAQVSLE 352
Query: 752 AALLQLAPDQQ 762
L+QLA + Q
Sbjct: 353 VGLIQLATEAQ 363
>gi|347550041|ref|YP_004856369.1| putative DNA polymerase III subunits gamma and tau [Listeria
ivanovii subsp. ivanovii PAM 55]
gi|346983112|emb|CBW87160.1| Putative DNA polymerase III (gamma and tau subunits) [Listeria
ivanovii subsp. ivanovii PAM 55]
Length = 577
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 196/371 (52%), Gaps = 13/371 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P++F+D+VGQ V + L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C+ C G ++ E+ N E I D+ + + + ++Y++
Sbjct: 63 NCEHGHDGEPCNECDICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
II L++I +E D+ AL ++A ++G +RDA L+Q+ G + ++V E+ G
Sbjct: 183 IIGRLEFILKEEKTPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVDDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
I+ L L+ A D + L ++ G +P+ L+ L D+L + K
Sbjct: 243 SIAQGLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLL----YQKA 298
Query: 707 RHRRKFFRRQPLSKEEME--------KLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ + R + E + K+ + +K L+ A++Q+R SN ++ AL+QL
Sbjct: 299 PNLEETLERALIDDEFVSLAKRANSFKIYEFVKILNTAQQQMRFSNHPGIYVEVALVQLT 358
Query: 759 PDQQYVLPSSS 769
Q V S++
Sbjct: 359 QAGQTVGESAA 369
>gi|47092324|ref|ZP_00230115.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
str. 4b H7858]
gi|417313913|ref|ZP_12100619.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
J1816]
gi|47019303|gb|EAL10045.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
str. 4b H7858]
gi|328468184|gb|EGF39190.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
J1816]
Length = 579
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/369 (28%), Positives = 191/369 (51%), Gaps = 33/369 (8%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P++F+D+VGQ V + L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRIFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C C G ++ E+ N E I D+ + + + ++Y++
Sbjct: 63 NCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
II L++I +E I D+ AL ++A ++G +RDA L+Q+ G + ++V E+ G
Sbjct: 183 IIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVAVEDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ L L+ A D + L ++ G +P+ L+ L D+L
Sbjct: 243 SVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVL--------- 293
Query: 707 RHRRKFFRRQPLSKEEME------------------KLRQALKTLSEAEKQLRMSNDKLT 748
+++ P +E +E K+ + +K L+ A++Q+R SN
Sbjct: 294 -----LYQKAPNLEETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGI 348
Query: 749 WLTAALLQL 757
++ AL+QL
Sbjct: 349 YVEVALVQL 357
>gi|289435979|ref|YP_003465851.1| DNA polymerase III subunits gamma and tau [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|289172223|emb|CBH28769.1| DNA polymerase III, gamma and tau subunits [Listeria seeligeri
serovar 1/2b str. SLCC3954]
Length = 578
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 107/369 (28%), Positives = 191/369 (51%), Gaps = 33/369 (8%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P++F+D+VGQ V + L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQSFQDVVGQEHVTKTLKNAIIQNKTSHAYLFSGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C C G ++ E+ N E I D+ + + + ++Y++
Sbjct: 63 NCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
II L++I +E I D+ AL ++A ++G +RDA L+Q+ G + ++V E+ G
Sbjct: 183 IIGRLEFILKEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ L L+ A D + L ++ G +P+ L+ L D+L
Sbjct: 243 SVAQGLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVL--------- 293
Query: 707 RHRRKFFRRQPLSKEEME------------------KLRQALKTLSEAEKQLRMSNDKLT 748
+++ P +E +E K+ + +K L+ A++Q+R SN
Sbjct: 294 -----LYQKAPNLEETLERALVDDDFVALAKRADSLKIYEFVKILNTAQQQMRFSNHPGI 348
Query: 749 WLTAALLQL 757
++ AL+QL
Sbjct: 349 YVEVALVQL 357
>gi|423075844|ref|ZP_17064558.1| DNA polymerase III, subunit gamma and tau [Desulfitobacterium
hafniense DP7]
gi|361853072|gb|EHL05258.1| DNA polymerase III, subunit gamma and tau [Desulfitobacterium
hafniense DP7]
Length = 554
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 110/355 (30%), Positives = 197/355 (55%), Gaps = 4/355 (1%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P+ F+D+VGQ+ V + L+NA+M+ KV Y+F GP GTGKT+ A++ A+ALNC+
Sbjct: 6 LYREWRPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFSGPRGTGKTTTAKVLAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
E +PC C C+S D+G + + E+ N + I DL D + S S+Y++++
Sbjct: 66 HREGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAGESKYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P RVVFIL ++ + +P I+SR Q+F F ++ I
Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRIPLEQIHS 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
L + G +++ +AL++IA +S+G LRDA L+Q LL ++ V V +++G++ +
Sbjct: 186 HLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSILDQCLLLDGKLGVEQVYQVLGMVGE 245
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--AGSYDFTK-DR 707
E L+D L+ D + L + G++P ++ +L + L A + F +
Sbjct: 246 EFSAQLVDHLLTGDYAKALGCLGEGINQGMDPRQIIRELLDYLRQALLYASTQAFPQVAP 305
Query: 708 HRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
H R+ Q K ++ L Q + L + E QL+ + + L+Q+ D Q
Sbjct: 306 HLREHLAYQ-CQKLGLKTLLQWIGILLQGESQLKYAANARLAAELLLVQVIYDSQ 359
>gi|335040883|ref|ZP_08534003.1| DNA polymerase III, subunits gamma and tau [Caldalkalibacillus
thermarum TA2.A1]
gi|334179187|gb|EGL81832.1| DNA polymerase III, subunits gamma and tau [Caldalkalibacillus
thermarum TA2.A1]
Length = 582
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 108/370 (29%), Positives = 202/370 (54%), Gaps = 15/370 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+TFRD++GQ + Q L NA++ + Y+F GP GTGKTS A+I A+A+
Sbjct: 3 YQALYRVWRPQTFRDVIGQEHITQTLQNALVNQTYTHAYLFTGPRGTGKTSTAKIMAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NCQ +PC C +C +G ++ E+ N + I DL D + + + ++
Sbjct: 63 NCQEAPTAEPCNQCAACRGITQGTVVDVVEIDAASNNGVDEIRDLRDKVKYAPTEVRLKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P I+SRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLSQGAFNALLKTLEEPPSHVMFILATTEPHKIPLTIMSRCQRFDFKRISQKE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ L+ I ++EG ++ ++AL+L+ ++G +RD L+Q +S ++V V+ + G
Sbjct: 183 MLKRLKLICAEEGFQVQEEALELLTQVAEGGMRDCLSLLDQVVSYADGEVTVADVEAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ E L DL D L T ++ L +++E G EP+ ++ L D+L + +
Sbjct: 243 SVAQEALTDLADCLLRNKTEEAIRRLNLLIEEGKEPVRIVEDLIYFYRDVLL----YRQA 298
Query: 707 RHRRKFFRRQPLSKE--------EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ F+R L+++ + E L QA++ LS A++ ++ ++ +L AL+QL
Sbjct: 299 PGSAEGFQRLQLTEQLKERIETYQDEHLFQAIERLSRAQQDMKWTHHPRVFLEVALIQLT 358
Query: 759 PDQQYVLPSS 768
Q P+S
Sbjct: 359 --HQLAQPAS 366
>gi|218283247|ref|ZP_03489308.1| hypothetical protein EUBIFOR_01896 [Eubacterium biforme DSM 3989]
gi|218216002|gb|EEC89540.1| hypothetical protein EUBIFOR_01896 [Eubacterium biforme DSM 3989]
Length = 587
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 110/361 (30%), Positives = 192/361 (53%), Gaps = 18/361 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY P F ++VGQ + Q L NA+++ ++ Y+F GP GTGKTS A+IFA+ L
Sbjct: 3 YQALYRKYRPSNFDEVVGQTHIIQTLKNAIIQNRIAHAYLFCGPRGTGKTSIAKIFAKTL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + Q PCG C +C G +I E+ N + + +L+D + + +Y+I
Sbjct: 63 NCTN-SQDAPCGVCENCKMAANGSHPDIIEIDAASNNGVDEVRNLIDKVKYAPMQGKYKI 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ ++ +++A+ K ++ P V+FI ++ + + IISRCQ+F F K+ D
Sbjct: 122 YIIDEVHMMTSGAFNALLKTIEEPPAHVIFIFATTEPNKVLPTIISRCQRFDFNKVSVND 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I Y L + EGIEID+D L LIA +DG +RDA L+Q ++ I V ++++ G
Sbjct: 182 IKYRLSVVCKNEGIEIDQDGLTLIAQLADGGMRDALSILDQCVAYCTSHIDVNDIRKIYG 241
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY----- 701
+I+ E + L D +K+++ + G++ L + ++ D L Y
Sbjct: 242 VITSEDIGQLFSSIYKKDVDRFIKDIQKYSDMGMDIKRLTADFIHMLKDSLILDYSENST 301
Query: 702 ---DFTKDRHRRKFFRRQPLSKEEMEKLR-QALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
D KD RK+F+ P+ R Q ++ L + + +++ L +L A+LL++
Sbjct: 302 LVSDMNKDM-IRKYFKSAPI------HFRIQCMEELMDTYNKYTYASNALDYLEASLLKI 354
Query: 758 A 758
+
Sbjct: 355 S 355
>gi|219666120|ref|YP_002456555.1| DNA polymerase III subunits gamma and tau [Desulfitobacterium
hafniense DCB-2]
gi|219536380|gb|ACL18119.1| DNA polymerase III, subunits gamma and tau [Desulfitobacterium
hafniense DCB-2]
Length = 554
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 110/355 (30%), Positives = 197/355 (55%), Gaps = 4/355 (1%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P+ F+D+VGQ+ V + L+NA+M+ KV Y+F GP GTGKT+ A++ A+ALNC+
Sbjct: 6 LYREWRPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFSGPRGTGKTTTAKVLAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
E +PC C C+S D+G + + E+ N + I DL D + S S+Y++++
Sbjct: 66 HREGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAGESKYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P RVVFIL ++ + +P I+SR Q+F F ++ I
Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRIPLEQIHS 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
L + G +++ +AL++IA +S+G LRDA L+Q LL ++ V V +++G++ +
Sbjct: 186 HLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSILDQCLLLDGKLGVEQVYQVLGMVGE 245
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--AGSYDFTK-DR 707
E L+D L+ D + L + G++P ++ +L + L A + F +
Sbjct: 246 EFSAQLVDHLLTGDYAKALGCLGEGINQGMDPRQIIRELLDYMRQALLYASTQAFPQVAP 305
Query: 708 HRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
H R+ Q K ++ L Q + L + E QL+ + + L+Q+ D Q
Sbjct: 306 HLREHLAYQ-CQKLGLKTLLQWIGILLQGESQLKYAANARLAAELLLVQVIYDSQ 359
>gi|217966098|ref|YP_002351776.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes HCC23]
gi|386009482|ref|YP_005927760.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
L99]
gi|386028102|ref|YP_005948878.1| DNA polymerase III subunit gamma and tau [Listeria monocytogenes
M7]
gi|217335368|gb|ACK41162.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes HCC23]
gi|307572292|emb|CAR85471.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
L99]
gi|336024683|gb|AEH93820.1| DNA polymerase III gamma and tau subunit [Listeria monocytogenes
M7]
Length = 580
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/369 (28%), Positives = 191/369 (51%), Gaps = 33/369 (8%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P++F+D+VGQ V + L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C C G ++ E+ N E I D+ + + + ++Y++
Sbjct: 63 NCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
II L++I +E I D+ AL ++A ++G +RDA L+Q+ G + ++V E+ G
Sbjct: 183 IIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ L L+ A D + L ++ G +P+ L+ L D+L
Sbjct: 243 SVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVL--------- 293
Query: 707 RHRRKFFRRQPLSKEEME------------------KLRQALKTLSEAEKQLRMSNDKLT 748
+++ P +E +E K+ + +K L+ A++Q+R SN
Sbjct: 294 -----LYQKAPNLEETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGI 348
Query: 749 WLTAALLQL 757
++ AL+QL
Sbjct: 349 YVEVALVQL 357
>gi|406998237|gb|EKE16179.1| hypothetical protein ACD_11C00028G0006 [uncultured bacterium]
Length = 551
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 189/332 (56%), Gaps = 12/332 (3%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+ F D+ GQ+ + Q LSNA+ ++G Y+F GP GTGKT+ AR+FA+A+NCQ
Sbjct: 6 LYRKYRPQKFSDIFGQSHIVQTLSNAITHNRIGHAYLFTGPRGTGKTTMARLFAKAVNCQ 65
Query: 471 --SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ--YR 526
+ +PC C C + GKS +I E+ N E+I +L + PPSQ Y+
Sbjct: 66 KNNAATAEPCLECEVCKNISAGKSLDIFEIDAASNTGVENIRELRET--AKLPPSQAKYK 123
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
I++ D+ LS +++A+ K ++ P V+FIL ++ + +P IISRCQ+F F ++
Sbjct: 124 IYIIDEVHMLSSGAFNALLKTLEEPPAHVIFILATTEIHKVPDTIISRCQRFDFTRISLE 183
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELV 645
+II L IA+KE +EI+K AL+ IA ++G +RDAE L Q +SL ++I+ V+E++
Sbjct: 184 NIIKKLSDIAAKEEVEIEKSALEAIAISAEGGMRDAESLLGQVISLEDKKITTKEVEEIL 243
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G + + + DL + +S +T+ + + + +G + + IL S
Sbjct: 244 GTTNRQSIEDLTEALISKNTLKAISLIDEVANSGFDLDVFHKSVLNYFRQILLVSI---- 299
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAE 737
D+ K F + L+ E+++K+ +K + AE
Sbjct: 300 DQSLAKNFSFE-LTSEQIKKILDLVKITNTAE 330
>gi|290891886|ref|ZP_06554883.1| dnaX protein [Listeria monocytogenes FSL J2-071]
gi|404409082|ref|YP_006691797.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC2376]
gi|290558480|gb|EFD91997.1| dnaX protein [Listeria monocytogenes FSL J2-071]
gi|404243231|emb|CBY64631.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC2376]
Length = 580
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/369 (28%), Positives = 191/369 (51%), Gaps = 33/369 (8%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P++F+D+VGQ V + L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C C G ++ E+ N E I D+ + + + ++Y++
Sbjct: 63 NCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
II L++I +E I D+ AL ++A ++G +RDA L+Q+ G + ++V E+ G
Sbjct: 183 IIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ L L+ A D + L ++ G +P+ L+ L D+L
Sbjct: 243 SVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVL--------- 293
Query: 707 RHRRKFFRRQPLSKEEME------------------KLRQALKTLSEAEKQLRMSNDKLT 748
+++ P +E +E K+ + +K L+ A++Q+R SN
Sbjct: 294 -----LYQKAPNLEETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGI 348
Query: 749 WLTAALLQL 757
++ AL+QL
Sbjct: 349 YVEVALVQL 357
>gi|123967081|ref|YP_001012162.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9515]
gi|123201447|gb|ABM73055.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9515]
Length = 595
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 120/368 (32%), Positives = 202/368 (54%), Gaps = 21/368 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H+ QKY P +LVGQ ++ L A++ +K+ Y+F GP GTGKTS ARIFA++L
Sbjct: 5 HKPFHQKYRPSNLDELVGQEFISITLKQALISKKIAPAYLFNGPRGTGKTSSARIFAKSL 64
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S EQP PCG C C G + +I E+ N ++I +++D + +++
Sbjct: 65 NCLSCEQPTANPCGKCELCKQIADGNALDIIEIDAASNTGVDNIREIIDGARFTPTQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS + +A+ K ++ P RVVFIL +++ + + + I SRCQKF F ++
Sbjct: 125 KVYVIDECHMLSTAASNALLKTIEEPPERVVFILATTNPERVINTIQSRCQKFDFKRISS 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
I + L IA+KE I+ + ALKLIA RS+G +RDA+ L+QLSLL ++ VQ L+
Sbjct: 185 NTIFHNLSEIANKESIKFEDQALKLIAKRSNGGMRDAQSLLDQLSLLPNGVTTKNVQNLL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV------------I 693
G +S+ L++L++ + + + + + + ++G EP ++ L +
Sbjct: 245 GEVSENDLINLINALIYNEPESLLISCNQLYDSGNEPHEILVGLLNITRDLLLKTLNNNY 304
Query: 694 TDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAA 753
+DI S DF + + KF + +SK + LK + + Q++ S++ WL
Sbjct: 305 SDIFYTSIDFQNELN--KFSKN--ISKMRIIDWHNKLKNI---DYQIKTSDNPKLWLEVH 357
Query: 754 LLQLAPDQ 761
L L ++
Sbjct: 358 LTSLIENK 365
>gi|228943829|ref|ZP_04106216.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228815853|gb|EEM62087.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 562
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 106/372 (28%), Positives = 203/372 (54%), Gaps = 13/372 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S +R++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+S + L +L++ D ++ + +M G +P+ M D+L +
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSSQLE 302
Query: 707 RHRRKF-----FRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759
R + FR + EEM E + + + TLS+ +++++ +N +L ++QL
Sbjct: 303 RMLERVMVDEQFR---MLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC- 358
Query: 760 DQQYVLPSSSAD 771
QQ+++ ++ AD
Sbjct: 359 -QQFMMQANGAD 369
>gi|116071743|ref|ZP_01469011.1| DNA-directed DNA polymerase [Synechococcus sp. BL107]
gi|116065366|gb|EAU71124.1| DNA-directed DNA polymerase [Synechococcus sp. BL107]
Length = 636
Score = 189 bits (481), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 173/292 (59%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L KY P+ F LVGQ + L NA+ ++ Y+F GP GTGKTS ARI AR+L
Sbjct: 5 YQPLHHKYRPQRFDQLVGQEAITATLGNALTSNRIAPAYLFSGPRGTGKTSSARILARSL 64
Query: 468 NCQSLE--QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NCQ+ + P+PCG C+ C + G + ++ E+ N ++I +L++ + +++
Sbjct: 65 NCQNSDGPTPEPCGTCDLCRTIASGTALDVIEIDAASNTGVDNIRELIERSRFAPVQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P +VVF+L ++ + I+SRCQ+F F ++
Sbjct: 125 KVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIPL 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L WIA +E I I +A+ ++A RS G LRDAE L+QLSLL I V +L+
Sbjct: 185 DALEQHLTWIAEQESIAIQPEAIHVVAQRSQGGLRDAESLLDQLSLLPPPIEANAVWDLL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G + +++L+ L S++ V ++ R +++ G +P +++ LA V+ D++
Sbjct: 245 GAVPEQELLALAQAMTSSEPVALLEATRNLLDRGRDPGSVLQGLAGVLRDLV 296
>gi|332710811|ref|ZP_08430748.1| DNA polymerase III, subunits gamma and tau [Moorea producens 3L]
gi|332350364|gb|EGJ29967.1| DNA polymerase III, subunits gamma and tau [Moorea producens 3L]
Length = 763
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 124/380 (32%), Positives = 213/380 (56%), Gaps = 12/380 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+ F DLVGQ+ +A+ L+NA+ ++ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQRFADLVGQDAIAKTLTNAIESERIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NC--QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC L P PCG C+ C G S ++ E+ + ++I ++++ + +Y
Sbjct: 63 NCLKTDLPTPFPCGECHVCREIAGGLSLDVTEMDAASHTGVDNIREIIERAQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++++ K ++ P RVVFIL ++ + IISRCQ+F F ++
Sbjct: 123 KVYVIDECHMLSTAAFNSLLKTLEEPPERVVFILATTDPQRVLPTIISRCQRFDFRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L+ IA KE I I DAL L+A + G LRDAE L+QLSLL ++++V V +LV
Sbjct: 183 EAMVSHLKDIAVKENITITPDALTLVAQGAQGGLRDAESLLDQLSLLDEQVTVEQVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G + ++ L+ LL+ S++ V ++ +++ G EPL ++ LA+ D+L +
Sbjct: 243 GALPEQDLLALLNAIASSEAVAVLEQCGYLIDRGREPLVILQNLASFYRDLLIAKTAPAR 302
Query: 706 DR----HRRKFFRRQPLSKE-EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760
+ + + L+K+ ++E + + + L ++E Q++ + WL L+ L P
Sbjct: 303 NNLSAITLPTWQKLCELAKQLDVESILRGQQHLKDSEIQIKNTTQPRLWLEVTLMGLLP- 361
Query: 761 QQYVLPSSSADTS--FSHSP 778
L S S +TS F +P
Sbjct: 362 --AALASQSVETSKLFPENP 379
>gi|113955220|ref|YP_729300.1| DNA polymerase III subunits gamma and tau [Synechococcus sp.
CC9311]
gi|113882571|gb|ABI47529.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp.
CC9311]
Length = 643
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 113/343 (32%), Positives = 194/343 (56%), Gaps = 7/343 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L KY P+ F LVGQ +A L +A+ ++ Y+F GP GTGKTS ARI AR+L
Sbjct: 5 YQPLHHKYRPQRFDQLVGQEAIAATLGHALTSGRIAPAYLFSGPRGTGKTSSARILARSL 64
Query: 468 NCQSLE--QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S + P+PCG C C + RG + ++ E+ N ++I DL++ + +++
Sbjct: 65 NCLSHDGPTPQPCGTCELCNTIARGTALDVIEIDAASNTGVDNIRDLIERSRFAPVQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P +VVF+L ++ + I+SRCQ+F F ++
Sbjct: 125 KVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIPL 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L WIA +E I I +AL ++A R+ G LRDAE L+QLSLL I V +L+
Sbjct: 185 EALNSHLAWIAEQESIPIQPEALHVVAQRAQGGLRDAESLLDQLSLLPGPIKADAVWDLL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDI--LAGSYDF 703
G + +++L++L + + + ++ R +++ G +P A++ LA ++ D+ +A + D
Sbjct: 245 GAVPEQELLNLAEALAEGEPLTLLEASRRLLDRGRDPGAVLQGLAGILRDLVLMAVAPDR 304
Query: 704 TKDRHRRKFFRRQ-PLSKEEM--EKLRQALKTLSEAEKQLRMS 743
+ FR Q P + + ++L L +E+QLR S
Sbjct: 305 PELTGVSPQFREQLPALAKRLGRQRLLYWQAQLKGSEQQLRQS 347
>gi|354567395|ref|ZP_08986564.1| DNA polymerase III, subunits gamma and tau [Fischerella sp. JSC-11]
gi|353542667|gb|EHC12128.1| DNA polymerase III, subunits gamma and tau [Fischerella sp. JSC-11]
Length = 634
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 121/364 (33%), Positives = 198/364 (54%), Gaps = 17/364 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P++F +LVGQ +A L+NA+ K+ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPKSFAELVGQEAIATTLTNAIRASKIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC ++P +PCG C+ C +G S ++ E+ N ++I ++++ + +Y
Sbjct: 63 NCLKSDKPTAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIREIIERAQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P+ VVF+L ++ + IISRCQ+F F ++
Sbjct: 123 KVYVVDECHMLSTAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L IA+KE I I+ +A+ L+A + G LRDAE L+QLSLL ++ V +LV
Sbjct: 183 EAMVQHLSTIATKENININPEAITLVAQIAQGGLRDAESLLDQLSLLSGEVTPDHVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNL-RVIMETGVEPLALMSQLATVITDILAGSYDFT 704
G +S+ L+ LL A++ D V + R I++ G EPL ++ LA + D+L
Sbjct: 243 GSVSERDLLTLLG-AIATDNPEAVLDCTRQILDRGREPLIILQNLAALYRDLLIAK---- 297
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQAL---------KTLSEAEKQLRMSNDKLTWLTAALL 755
R+ P + + + Q L + L AE QL+ + WL LL
Sbjct: 298 TAPSRQNLVACTPQTWQALVSFAQQLDISTILQGQQHLRTAELQLKNTTQPRLWLEVTLL 357
Query: 756 QLAP 759
L P
Sbjct: 358 GLLP 361
>gi|374710504|ref|ZP_09714938.1| DNA polymerase III subunits gamma and tau [Sporolactobacillus
inulinus CASD]
Length = 569
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 168/291 (57%), Gaps = 1/291 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + Y P+TF DL GQ +AQ L NA+ +++ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVYRPQTFHDLAGQQHIAQTLQNALTKQQFSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEQAPTSEPCNECAACRGITAGSIADVIEIDAASNNGVDEIRDIRDKVKYAPSEVRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VFIL ++ +P IISRCQ+F F ++ ++
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPEHAVFILATTEPQKIPLTIISRCQQFDFRRIPSSE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I L+++ + +E + +AL+LIA S+G +RDA L+Q + + I+V V ++ G
Sbjct: 183 IFQRLRFVVQDQHLEAEDEALQLIAKASEGGMRDALSVLDQTAAYSEAAITVQDVLDVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+++D+ + +L++L + + V + +++ G +PL LM Q+ D+L
Sbjct: 243 MVADQMIRELIELLMENNAAAAVGKIGALLDQGKDPLRLMEQMIYYYRDLL 293
>gi|406920505|gb|EKD58556.1| hypothetical protein ACD_56C00097G0001 [uncultured bacterium]
Length = 614
Score = 189 bits (480), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 99/263 (37%), Positives = 163/263 (61%), Gaps = 5/263 (1%)
Query: 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC 469
+L +KY P TF D++GQ + Q LSNA++ +VG Y+F GP GTGKT+ ARIFAR++NC
Sbjct: 9 SLYRKYRPVTFADVIGQTHIVQTLSNAIIHGRVGHAYLFTGPRGTGKTTMARIFARSVNC 68
Query: 470 QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ--YRI 527
Q+ + KPC C+ C + G+S +I E+ N ++I +L +N+ PPSQ ++I
Sbjct: 69 QNPDGAKPCLECDVCKNISEGRSLDIFEIDAASNTGVDNIRELRENV--KFPPSQAKFKI 126
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ + +P IISRCQ++ F ++
Sbjct: 127 YIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEIHKVPETIISRCQRYDFTRLSLDH 186
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
II L IA E +EIDK+AL++IA ++G +RDAE L Q ++L ++I+ V+E++G
Sbjct: 187 IIEKLSVIAKNEKVEIDKNALEMIAISAEGGMRDAESLLGQVMALEDKKITAKEVEEILG 246
Query: 647 LISDEKLVDLLDLALSADTVNTV 669
+ L ++ LS + +
Sbjct: 247 TTQRQSLEAMIAYLLSNNATGAI 269
>gi|443319415|ref|ZP_21048647.1| DNA polymerase III, subunit gamma/tau [Leptolyngbya sp. PCC 6406]
gi|442780934|gb|ELR91042.1| DNA polymerase III, subunit gamma/tau [Leptolyngbya sp. PCC 6406]
Length = 454
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 118/364 (32%), Positives = 187/364 (51%), Gaps = 17/364 (4%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q L KY P+ DLVGQNL+ L+ A+ + ++ Y+FYGP GTGKTS ARI A++LN
Sbjct: 3 QPLHLKYRPQRLVDLVGQNLIRDCLTVALNQNQIAPAYLFYGPRGTGKTSTARILAKSLN 62
Query: 469 CQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYR 526
C E P PCG C +C S G + ++ E+ + E +L+ + S S+Y+
Sbjct: 63 CLKREGPTATPCGECGTCRSIANGSALDVIEIDAASHGGVEDARELVQSSQLSPAQSRYK 122
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+ + D+C L+ + +A+ KV++ P RVVFIL ++ + I SRC F F +
Sbjct: 123 VVILDECHMLTTQAQNALLKVIEEPPLRVVFILATTEPHKVLPTISSRCLTFEFRPLSAK 182
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELV 645
+ L IA EGI I D ++ +A G LRDA L +++LL + P V +
Sbjct: 183 ALKAYLGRIAQAEGIAITGDGIEAMAKLCQGGLRDALQLLAKVALLDSDEVDGPQVYAMT 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G + +++ +L+ LS + ++ R ++ETG P+ L L V D++ K
Sbjct: 243 GQVGGHQVLPVLESVLSRAVLELLQRARTLIETGHTPMELHLALLAVYHDLM-----VVK 297
Query: 706 DRHRRKFFRRQPLSKEEMEKL---------RQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
+ + PLS ++E L Q+L+ L E+E+QLR S + WL L++
Sbjct: 298 QTPKAESLLSGPLSPSQLEPLAGSLSLEQIYQSLEVLGESERQLRFSPNPQPWLEVVLMK 357
Query: 757 LAPD 760
L P+
Sbjct: 358 LMPE 361
>gi|301051759|ref|YP_003789970.1| DNA polymerase III subunits gamma and tau [Bacillus cereus biovar
anthracis str. CI]
gi|423554043|ref|ZP_17530369.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus ISP3191]
gi|300373928|gb|ADK02832.1| DNA polymerase III subunits gamma and tau [Bacillus cereus biovar
anthracis str. CI]
gi|401181995|gb|EJQ89141.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus ISP3191]
Length = 562
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 201/369 (54%), Gaps = 7/369 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S +R++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--AGSYDFT 704
+S + L +L++ D ++ + +M G +P+ M D+L S
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSSQLE 302
Query: 705 KDRHRRKFFRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
R + + EEM E + + + TLS+ +++++ +N +L ++QL QQ
Sbjct: 303 HMLERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC--QQ 360
Query: 763 YVLPSSSAD 771
+++ ++ AD
Sbjct: 361 FMMQANGAD 369
>gi|228925276|ref|ZP_04088374.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|229119685|ref|ZP_04248948.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 95/8201]
gi|228663776|gb|EEL19353.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 95/8201]
gi|228834390|gb|EEM79929.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
Length = 562
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 201/369 (54%), Gaps = 7/369 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S +R++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--AGSYDFT 704
+S + L +L++ D ++ + +M G +P+ M D+L S
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSSQLE 302
Query: 705 KDRHRRKFFRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
R + + EEM E + + + TLS+ +++++ +N +L ++QL QQ
Sbjct: 303 HMLERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC--QQ 360
Query: 763 YVLPSSSAD 771
+++ ++ AD
Sbjct: 361 FMMQANGAD 369
>gi|49476694|ref|YP_034378.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|228931525|ref|ZP_04094433.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|49328250|gb|AAT58896.1| DNA polymerase III, gamma and tau subunits [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|228828143|gb|EEM73869.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
Length = 562
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 201/369 (54%), Gaps = 7/369 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S +R++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--AGSYDFT 704
+S + L +L++ D ++ + +M G +P+ M D+L S
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSSQLE 302
Query: 705 KDRHRRKFFRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
R + + EEM E + + + TLS+ +++++ +N +L ++QL QQ
Sbjct: 303 HMLERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC--QQ 360
Query: 763 YVLPSSSAD 771
+++ ++ AD
Sbjct: 361 FMMQANGAD 369
>gi|395243165|ref|ZP_10420152.1| DNA polymerase III, gamma and tau subunits [Lactobacillus hominis
CRBIP 24.179]
gi|394484395|emb|CCI81160.1| DNA polymerase III, gamma and tau subunits [Lactobacillus hominis
CRBIP 24.179]
Length = 610
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 200/371 (53%), Gaps = 10/371 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF +VGQ + L NA+ R+K+ ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDAVVGQEAITDTLKNAIKRQKISHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +C + D+G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECANCKAADQGSLNDIIEIDAASNNGVDEIREIRDKVKYAPTQGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYTFKRIDSQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ + +I ++EG+E + AL +IA +DG +RDA L+Q LS +I ++ G
Sbjct: 183 LVSRMTYILNQEGVEFEPKALDIIAQVADGGMRDALSILDQILSYDQDKIKYEDALKITG 242
Query: 647 LISDEKLVD-LLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
EK+ + LLDLA V +K ++ +++ G ++ ++ + ++ K
Sbjct: 243 FADQEKIENLLLDLANQKSDV-ALKTVKELLDNGASSKNILDEIIALSVKVMMA----LK 297
Query: 706 DRHRRKFFRRQPLSKEE---MEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
+ FF K + + KL Q + ++A LR +N + L +++ + D
Sbjct: 298 GDTAQTFFTENYQDKIKGIAVNKLSQIVDLANQALNDLRYTNQQQIPLDVFVVKTSQDAP 357
Query: 763 YVLPSSSADTS 773
S+++ TS
Sbjct: 358 VAQASNNSATS 368
>gi|218901224|ref|YP_002449058.1| DNA polymerase III subunits gamma and tau [Bacillus cereus AH820]
gi|218540226|gb|ACK92624.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH820]
Length = 562
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 201/369 (54%), Gaps = 7/369 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGAISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S +R++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--AGSYDFT 704
+S + L +L++ D ++ + +M G +P+ M D+L S
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSSQLE 302
Query: 705 KDRHRRKFFRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
R + + EEM E + + + TLS+ +++++ +N +L ++QL QQ
Sbjct: 303 HMLERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC--QQ 360
Query: 763 YVLPSSSAD 771
+++ ++ AD
Sbjct: 361 FMMQANGAD 369
>gi|196047917|ref|ZP_03115095.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 03BB108]
gi|196021173|gb|EDX59902.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 03BB108]
Length = 543
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 197/358 (55%), Gaps = 5/358 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY P +F +L+GQN + Q L NA+ K Y+ GP GTGKTS ++FA+A+
Sbjct: 2 YQALYRKYRPSSFGELIGQNHIKQTLLNALKSNKFTHAYMLTGPRGTGKTSIGKLFAKAI 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ L +PC CN C +I E+ N E I D+ + + + +Y++
Sbjct: 62 NCEHLVNGEPCNDCNQCKQIMNNSHPDILEIDAASNNGVEQIRDIREQVTYAPSVGKYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ VVFIL ++ + +P IISRCQ+F F ++ D
Sbjct: 122 YIIDEVHMLSIGAFNALLKTLEEPPKNVVFILATTDIHKVPVTIISRCQRFDFRRIGQKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+I ++++AS E ++I+++AL+LI+ + G +RDA L+Q ++ I+ V E+VG
Sbjct: 182 LIERMKFVASNEELQIEEEALQLISMLAQGGMRDALSLLDQTVAFASGEITKNDVSEVVG 241
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
IS EK+ + L+ +T + + ++ G EP+ ++ L + D++ G K+
Sbjct: 242 RISIEKIEMCVQYLLTRNTTEILSLVNEVILNGKEPIYVLDDLIGYLRDLVIGKAFGVKE 301
Query: 707 RHRRKFFRRQPLSK----EEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760
+ + +K ++ +++ ++ L+E +++++ SN L L+QL +
Sbjct: 302 DNITTAIVNEHFNKLLKVADVSQMQHMIRKLTEIKQEMKFSNHAQISLEVGLIQLVTE 359
>gi|440685071|ref|YP_007159865.1| DNA polymerase III, subunits gamma and tau [Anabaena cylindrica PCC
7122]
gi|428682190|gb|AFZ60955.1| DNA polymerase III, subunits gamma and tau [Anabaena cylindrica PCC
7122]
Length = 499
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 117/354 (33%), Positives = 182/354 (51%), Gaps = 22/354 (6%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L QKY P+T +LVGQ + AL+NA+ ++ Y+ G GTGKTS ARIFA++LNC
Sbjct: 6 LHQKYRPQTLAELVGQPYIKTALTNAIKHLQIAPAYLLTGSRGTGKTSTARIFAKSLNCL 65
Query: 471 SLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
+ ++P KPCG C SC + + S ++ E+ N + L++ + +YRIF
Sbjct: 66 NSKKPTDKPCGICQSCRAIETSNSLDVSEIDAASNNGVDDARALIERCTLAPVAGRYRIF 125
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ L+ S +A+ K ++ P V+FIL ++ + IISRCQ F F + I
Sbjct: 126 ILDENHQLTTQSQNALLKCIEEPPPHVIFILCTTEQHKVLPTIISRCQVFNFRTLSIKTI 185
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLI 648
+ L+ IA E I +D +AL IA SDG LRDA L Q SLL I+ V E+VG +
Sbjct: 186 VQHLRIIADAESIAVDDEALSAIARLSDGGLRDALQLLGQASLLDVDITAHHVMEIVGGV 245
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD------------I 696
++ +L+ +L + +T N ++ RV++++G P ++S L D +
Sbjct: 246 TEAELIAILQAISTNNTFNLLQVARVLVDSGKTPKLIISNLLQTYRDLLIIKSAPQEQAL 305
Query: 697 LAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWL 750
L G T+ + K + E L +L L +AE LR + + WL
Sbjct: 306 LTGCVSHTQLKAFAKHW--------NFETLNLSLGELQKAENYLRYTVNATVWL 351
>gi|30260213|ref|NP_842590.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
Ames]
gi|47525274|ref|YP_016623.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
'Ames Ancestor']
gi|49183057|ref|YP_026309.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
Sterne]
gi|65317485|ref|ZP_00390444.1| COG2812: DNA polymerase III, gamma/tau subunits [Bacillus anthracis
str. A2012]
gi|165873240|ref|ZP_02217851.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0488]
gi|167635052|ref|ZP_02393369.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0442]
gi|167642050|ref|ZP_02400277.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0193]
gi|170688902|ref|ZP_02880104.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0465]
gi|170707528|ref|ZP_02897981.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0389]
gi|177655681|ref|ZP_02937006.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0174]
gi|190569330|ref|ZP_03022222.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
Tsiankovskii-I]
gi|227812696|ref|YP_002812705.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
CDC 684]
gi|229604772|ref|YP_002864674.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
A0248]
gi|254686611|ref|ZP_05150470.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
CNEVA-9066]
gi|254737001|ref|ZP_05194706.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
Western North America USA6153]
gi|254744199|ref|ZP_05201880.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
Kruger B]
gi|254751190|ref|ZP_05203229.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
Vollum]
gi|254761660|ref|ZP_05213678.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
Australia 94]
gi|386733891|ref|YP_006207072.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
H9401]
gi|421511646|ref|ZP_15958500.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
UR-1]
gi|421640994|ref|ZP_16081563.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
BF1]
gi|30253534|gb|AAP24076.1| DNA polymerase III, gamma and tau subunit [Bacillus anthracis str.
Ames]
gi|47500422|gb|AAT29098.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
'Ames Ancestor']
gi|49176984|gb|AAT52360.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
Sterne]
gi|164711038|gb|EDR16604.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0488]
gi|167509984|gb|EDR85403.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0193]
gi|167529526|gb|EDR92276.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0442]
gi|170127524|gb|EDS96398.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0389]
gi|170667126|gb|EDT17887.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0465]
gi|172080021|gb|EDT65121.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0174]
gi|190559552|gb|EDV13545.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
Tsiankovskii-I]
gi|227004387|gb|ACP14130.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
CDC 684]
gi|229269180|gb|ACQ50817.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0248]
gi|384383743|gb|AFH81404.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
H9401]
gi|401818313|gb|EJT17529.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
UR-1]
gi|403391889|gb|EJY89156.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
BF1]
Length = 562
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 201/369 (54%), Gaps = 7/369 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S +R++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--AGSYDFT 704
+S + L +L++ D ++ + +M G +P+ M D+L S
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 705 KDRHRRKFFRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
R + + EEM E + + + TLS+ +++++ +N +L ++QL QQ
Sbjct: 303 HMLERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC--QQ 360
Query: 763 YVLPSSSAD 771
+++ ++ AD
Sbjct: 361 FMMQANGAD 369
>gi|196036412|ref|ZP_03103809.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus W]
gi|228912761|ref|ZP_04076410.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|254724164|ref|ZP_05185949.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
A1055]
gi|195991042|gb|EDX55013.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus W]
gi|228846888|gb|EEM91891.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 562
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 201/369 (54%), Gaps = 7/369 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S +R++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--AGSYDFT 704
+S + L +L++ D ++ + +M G +P+ M D+L S
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 705 KDRHRRKFFRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
R + + EEM E + + + TLS+ +++++ +N +L ++QL QQ
Sbjct: 303 HMLERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC--QQ 360
Query: 763 YVLPSSSAD 771
+++ ++ AD
Sbjct: 361 FMMQANGAD 369
>gi|52145193|ref|YP_081637.1| DNA polymerase III subunits gamma and tau [Bacillus cereus E33L]
gi|51978662|gb|AAU20212.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus E33L]
Length = 562
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 201/369 (54%), Gaps = 7/369 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S +R++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--AGSYDFT 704
+S + L +L++ D ++ + +M G +P+ M D+L S
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 705 KDRHRRKFFRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
R + + EEM E + + + TLS+ +++++ +N +L ++QL QQ
Sbjct: 303 HMLERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC--QQ 360
Query: 763 YVLPSSSAD 771
+++ ++ AD
Sbjct: 361 FMMQANGAD 369
>gi|443477235|ref|ZP_21067096.1| DNA polymerase III, subunits gamma and tau [Pseudanabaena biceps
PCC 7429]
gi|443017680|gb|ELS32071.1| DNA polymerase III, subunits gamma and tau [Pseudanabaena biceps
PCC 7429]
Length = 652
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 132/383 (34%), Positives = 203/383 (53%), Gaps = 21/383 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+ F DLVGQ +A LSNA+ ++ Y+F G GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQIFADLVGQEAIAHTLSNALNTGRIAPAYLFTGARGTGKTSSARIMAKSL 62
Query: 468 NCQSLEQPKP--CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S + P P CG C C S G + +I E+ N ++I +L++ + +++
Sbjct: 63 NCLSSDSPTPHPCGKCELCHSIANGNALDITEIDAASNTGVDNIRELIERAQFAPVKARF 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+C LS +++A+ K ++ P RV FIL ++ + IISRCQ+F F ++
Sbjct: 123 KVYIIDECHMLSTAAFNALLKTLEEPPDRVTFILATTDPQRVLPTIISRCQRFDFRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L IA+ E I I +AL L+A + G LRDAE L+QLSLL I+V V +LV
Sbjct: 183 DAMVKHLGKIAANENINIHIEALTLVAQIAQGGLRDAESLLDQLSLLDGEITVEAVWDLV 242
Query: 646 GLISDEKLVDLLDLALSAD-TVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT 704
G + ++ L+ L++ A++AD + + +R IM+ G EPL ++ LA V D+L
Sbjct: 243 GSVPEQDLLSLVE-AIAADHSTQLIDYVRRIMDRGREPLIVLQNLANVYRDLLIAK---- 297
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQAL---------KTLSEAEKQLRMSNDKLTWLTAALL 755
R E + +L Q L + L AE Q+R S WL L+
Sbjct: 298 TASDRSDLVAMTSSGWERLIQLAQGLAIPNILLGQQHLRSAELQIRNSTQPRLWLEVTLM 357
Query: 756 QLAPDQQ----YVLPSSSADTSF 774
L P Q V PS+ + SF
Sbjct: 358 GLLPSAQGAIAQVPPSNPSAKSF 380
>gi|89892857|ref|YP_516344.1| hypothetical protein DSY0111 [Desulfitobacterium hafniense Y51]
gi|89332305|dbj|BAE81900.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 557
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 167/279 (59%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P+ F+D+VGQ+ V + L+NA+M+ KV Y+F GP GTGKT+ A++ A+ALNC+
Sbjct: 6 LYREWRPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFSGPRGTGKTTTAKVLAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
E +PC C C+S D+G + + E+ N + I DL D + S S+Y++++
Sbjct: 66 HREGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAGESKYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P RVVFIL ++ + +P I+SR Q+F F ++ I
Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRIPLEQIHS 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
L + G +++ +AL++IA +S+G LRDA L+Q LL ++ V V +++G++ +
Sbjct: 186 HLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSILDQCLLLDGKLGVEQVYQVLGMVGE 245
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689
E L+D L+ D + L + G++P ++ +L
Sbjct: 246 EFSAQLVDHLLTGDYAKALGCLGEGINQGMDPRQIIREL 284
>gi|33862214|ref|NP_893775.1| DNA polymerase subunits gamma and tau [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
gi|33634432|emb|CAE20117.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
Length = 579
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 144/507 (28%), Positives = 250/507 (49%), Gaps = 57/507 (11%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H+ QKY P +LVGQ ++ L A++ +K+ Y+F GP GTGKTS ARIFA++L
Sbjct: 5 HKPFHQKYRPLNLDELVGQEFISITLKQALISQKIAPAYLFNGPRGTGKTSSARIFAKSL 64
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S +QP PC C CI G + +I E+ N E+I +++D + +++
Sbjct: 65 NCLSSKQPTPNPCEKCELCIQIAEGNALDIIEIDAASNTGVENIREIIDRARFAPTQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS + +A+ K ++ P RVVFIL +++ + + + I SRCQKF F ++
Sbjct: 125 KVYVIDECHMLSTAASNALLKTIEEPPERVVFILATTNPERVINTIQSRCQKFDFKRISA 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
I L IA+KE I+ + ALKLIA RS+G +RDA+ L+QLSLL ++ VQ L+
Sbjct: 185 NTIFNNLSAIANKESIKFEDQALKLIAKRSNGGMRDAQSLLDQLSLLPNGVTTKNVQSLL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G +S+ L DL++ ++ + + + + + G EP ++ L + D+L T
Sbjct: 245 GEVSENDLTDLINALINNQPESLLISCNNLYDAGNEPNEILVGLLNITRDLLLK----TL 300
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQAL---------KTLSEAEKQLRMSNDKLTWLTAALLQ 756
+ + + + + E+ K + L + Q++ S++ WL L
Sbjct: 301 NNNYSEMYYTSIEFQNELNKFSYNVSKNRIIDWHNKLKNVDYQIKTSDNPRLWLEIHLTS 360
Query: 757 LAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVRLENFH 816
L LE + + + + E+ NK+ + +N +
Sbjct: 361 L-----------------------LE----KNINQTIINKKELINKQV-----ISEDNKN 388
Query: 817 AENSGDFIDGNM--RKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNG-----IEE 869
SGDF + ++ IS D K SG +K + + ++ NS+N ++E
Sbjct: 389 QNESGDFNKKELINKQVISEDNKNQNESG-DFNKKELI--NNQDINQNSKNDNQTDYLKE 445
Query: 870 IWLEVLNRIQNNGTKEFLYREGKLISV 896
W +L++++ TK L ++ +L S+
Sbjct: 446 KWELILSKLELPSTKMLLSQQAELASI 472
>gi|428304953|ref|YP_007141778.1| DNA polymerase III subunits gamma and tau [Crinalium epipsammum PCC
9333]
gi|428246488|gb|AFZ12268.1| DNA polymerase III, subunits gamma and tau [Crinalium epipsammum
PCC 9333]
Length = 656
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 196/360 (54%), Gaps = 9/360 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF LVGQ +A LSNA+ R++ Y+F G GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQTFAQLVGQEAIATTLSNAIRLRRIAPAYLFTGARGTGKTSSARILAKSL 62
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S + P PCG C C + G + +I E+ N ++I +L++ + ++
Sbjct: 63 NCLSSDVPTSSPCGKCEVCRAIAFGSALDIIEIDAASNTGVDNIRELIERAQFAPVQCRH 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ LS +++A+ K ++ P VVF+L ++ + IISRCQ+F F ++
Sbjct: 123 KVYIIDEVHMLSTAAFNALLKTLEEPPAHVVFVLATTDPQRVLPTIISRCQRFDFRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L+ IA E I I +A+ L+A + G LRDAE L+QLSLL +++V V +L
Sbjct: 183 DPMAQHLRKIAEAENINITDEAVTLVAQMAQGGLRDAESLLDQLSLLAGQVTVEKVWDLT 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKN-LRVIMETGVEPLALMSQLATVITDILAGSYDFT 704
G + + L+ L+ A++A+ TV + R +ME G EPL ++ LA D+L +
Sbjct: 243 GAVPERDLIVLVQ-AIAANNAETVLDRARSLMERGREPLVVLQNLAGFYRDLLIAKTAPS 301
Query: 705 K-DRHRRKFFRRQPLSKE----EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759
+ D Q LS+E + ++ + K L ++E Q++ + WL LL L P
Sbjct: 302 RGDLVALTAQTWQQLSQEAKNWDANQILASQKHLKDSEVQIKNTTQPRLWLEVTLLGLLP 361
>gi|339006681|ref|ZP_08639256.1| DNA polymerase III subunit gamma/tau [Brevibacillus laterosporus
LMG 15441]
gi|338775890|gb|EGP35418.1| DNA polymerase III subunit gamma/tau [Brevibacillus laterosporus
LMG 15441]
Length = 593
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 147/566 (25%), Positives = 259/566 (45%), Gaps = 58/566 (10%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L + Y P+TF D++GQ V L NA+ ++ Y+F GP GTGKTS A+I A+A+
Sbjct: 3 YTALYRVYRPQTFGDVIGQTHVTTTLQNALREGRLSHAYLFNGPRGTGKTSAAKIMAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NCQ+ + +PC C +CI+ G ++ E+ N E I D+ D + + +Y++
Sbjct: 63 NCQNPQDGEPCNQCPACIAITEGSVTDVLEIDAASNRGVEEIRDIRDKVKFAPSEVKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+FIL ++ LP IISRCQ+F F ++ A+
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPGHVLFILATTEPHKLPATIISRCQRFDFHRISLAE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ LQ I + IE ++ ALKL+A ++G +RDA L+Q +S G ++S V ++ G
Sbjct: 183 MTQRLQHICDAQQIEAEEQALKLVAKMAEGGMRDALSLLDQAISYSGNQVSASDVLKITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+S L + + ++ L IM G +P + L D+L
Sbjct: 243 AVSQAYFSTLGRMISEQNVTGVMEELEKIMSQGKDPEQFLQDLLFYFRDML--------- 293
Query: 707 RHRRKFFRRQPLSKEEMEKL-----------RQALKTLSEAEKQLRMSNDKLTWLTAA-- 753
++ P +E ME+ R AL L E +QL + +L W T A
Sbjct: 294 -----LYKTAPNLEEIMERTLIDEKFPEVANRFALPVLYEVIEQLNQALTQLKWSTFARV 348
Query: 754 -----LLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGM-----TRKGGERAEISNKE 803
L++L ++ SSS S S +E G G+ T GG +A +S+ +
Sbjct: 349 LVEMTLVRLC----HLSASSSTAGSISVGQEAMEAGNGAGVRAVPNTASGGTQA-VSSPD 403
Query: 804 TGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNS 863
P+ R++ E + GN+ G + G +++ P + G +
Sbjct: 404 VA-PLFERVKMLE-EKLTQILQGNLVAGGKAASEE--GKQREVRRAMPATGGSKTSMTKV 459
Query: 864 RNGIEEI-----------WLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHL 912
R + ++ W ++L+ ++ K + +V+ A V H
Sbjct: 460 REAVRQVDEGLSQKIRGAWGQILSEVKKVHYKYHAWVVSGQPTVASSDAVIVTFKGSIHC 519
Query: 913 TKSKAEKFKDQILQAFESVLGSPLTI 938
K+ + + + +AF +V G PL +
Sbjct: 520 EKTMEPELRGIVERAFLTVTGKPLQL 545
>gi|395240954|ref|ZP_10417976.1| Possible DNA-directed DNA polymerase [Lactobacillus gigeriorum
CRBIP 24.85]
gi|394475462|emb|CCI87953.1| Possible DNA-directed DNA polymerase [Lactobacillus gigeriorum
CRBIP 24.85]
Length = 573
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 193/353 (54%), Gaps = 6/353 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF ++GQ + + L NA++R + ++F GP GTGKTSCA+I A+AL
Sbjct: 3 YQALYRKWRPRTFDSVIGQEAITETLKNALVRDTISHAFLFAGPRGTGKTSCAKILAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +C++ D+G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECPNCLAADKGALADIIEIDAASNNGVDEIREIRDKVKYAPTQGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ AD
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPAHVVFILATTELQKVPATIISRTQRYNFKRISKAD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-ISVPLVQELVG 646
+ +++I +E I + DA+ +IA +DG +RDA L+QL Q+ + ++ G
Sbjct: 183 LEKRMKFILEQEQISYEDDAIAVIAQVADGGMRDALSILDQLLSYEQKSVKYTDALQITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+ EK+ LL LSA++ +K + + + G ++ +L + T L T+
Sbjct: 243 FAAKEKIEQLLLKILSANSGEALKQAKELQDEGATAKNILDELIDLTTKALIAKQ--TQQ 300
Query: 707 RHRRKFFRRQPLSK---EEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
+F + L++ E+E+L + + + A LR +N + L L+Q
Sbjct: 301 EQANEFITKDFLTQIGNYELEQLFKLVDLANAALNDLRYTNQQQIPLEVFLVQ 353
>gi|212637866|ref|YP_002314386.1| DNA polymerase III subunits gamma and tau [Anoxybacillus
flavithermus WK1]
gi|212559346|gb|ACJ32401.1| DNA polymerase III tau subunit [Anoxybacillus flavithermus WK1]
Length = 559
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/372 (27%), Positives = 204/372 (54%), Gaps = 15/372 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L + + P++F+D+VGQ V + L NA++++K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YRALYRVFRPQSFKDVVGQEHVTKTLQNALLQQKISHAYLFSGPRGTGKTSIAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C+ G ++ E+ N + I D+ D + + + Y++
Sbjct: 63 NCEHRPTAEPCNECPTCLGIMNGSISDVLEIDAASNNGVDEIRDIRDKVKFAPTSAPYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P I+SRCQ+F F +++
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIVSRCQRFDFRRIELKS 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L+ + ++EGI+++++AL IA +DG +RDA L+Q +S R+ + V + G
Sbjct: 183 IVSRLKTVVTEEGIDVEEEALFAIARAADGGMRDALSLLDQAISFSDDRVLLEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAG------- 699
+S K+ DL+ TV ++ + +ME G +P L+ L D+L
Sbjct: 243 AVSQRKIADLIHAMYEKKTVEALRLFQDLMEQGKDPNRLVEDLIYYYRDMLLYKAAPQLE 302
Query: 700 --SYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
++ D R+ P S + +A+ LS+++ +R++N + +++L
Sbjct: 303 DVTHRMLVDERFRELSDMIPTS-----FIYEAIDLLSKSQHDMRLTNHPRIHMEVTIVKL 357
Query: 758 APDQQYVLPSSS 769
++++ + S+S
Sbjct: 358 CYEEEHAIKSTS 369
>gi|17158706|ref|NP_478217.1| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120]
gi|17134655|dbj|BAB77213.1| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120]
Length = 429
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 118/363 (32%), Positives = 193/363 (53%), Gaps = 15/363 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+ +++GQ + + L NA+ +K+ Y+F GP GTGKTS ARI A++L
Sbjct: 2 YRPLHLKYRPQILSEVIGQEHIVRTLINAIAFQKIAPAYLFSGPKGTGKTSTARIIAKSL 61
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NCQS +P KPCG CNSC S ++ E+ N E I +L+ + S++
Sbjct: 62 NCQSSNEPTTKPCGECNSCKGITASSSVDVTELDAASNSGVELIRELISTTQFAPVESRF 121
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+IF+ D+C LS SW A+ K ++ PR VVFI ++ L +P I+SRCQKF F ++
Sbjct: 122 KIFIIDECHALSSQSWQALLKTIESPPRHVVFIFCTTELHKVPETIVSRCQKFDFKRVPV 181
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQEL 644
+ + L+ I+ +E I I A+ +A + G LRD+ L+QL+LLG + I+ V EL
Sbjct: 182 SLVASYLEKISHQESINIAPSAVTAVAKANKGHLRDSLKLLDQLTLLGEEEITYNWVWEL 241
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT 704
G I + L+ + + + + + L+ +E+G +P A+ + L + D+L +
Sbjct: 242 SGTIPEYDLLTVCENIIKGEITGNLGILQDWIESGKQPTAIHTSLVNFLKDLLVCKTN-P 300
Query: 705 KDRHRRKFFRRQPLSKE--------EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
RH + Q +E ++++R A+ L A + L D WL A L++
Sbjct: 301 NGRHLTQL--EQDTWEELVSISQLWNIDQIRNAIAILM-ARQSLMRDEDAHLWLEATLIE 357
Query: 757 LAP 759
+ P
Sbjct: 358 IVP 360
>gi|407003314|gb|EKE19906.1| hypothetical protein ACD_8C00087G0006 [uncultured bacterium]
Length = 596
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 158/257 (61%), Gaps = 5/257 (1%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P TF D++GQ + Q LSNA++ ++G Y+F GP GTGKT+ ARIFARA+NCQ
Sbjct: 5 LYRKYRPLTFSDVIGQGHIVQTLSNAILHNRIGHAYLFTGPRGTGKTTMARIFARAVNCQ 64
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIF 528
+ + PC C+ C + +G S +I E+ N ++I +L +N+ PPS +++++
Sbjct: 65 NPKGADPCLECDVCKNITQGTSLDIFEIDAASNTGVDNIRELRENV--KFPPSIAKFKVY 122
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ LS +++A+ K ++ P V+FIL ++ + +P IISRCQ++ F ++ I
Sbjct: 123 IIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEIHKVPETIISRCQRYDFTRLSLEHI 182
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGL 647
I L IA E + I+K AL++IA S+G +RDAE L Q ++L ++I+ V+E++G
Sbjct: 183 IEKLSTIAKTENVSIEKSALEMIAIASEGGMRDAESLLSQVMALEDKKITAKEVEEILGT 242
Query: 648 ISDEKLVDLLDLALSAD 664
+ L ++ LS D
Sbjct: 243 TQRQSLEAMVKYLLSKD 259
>gi|218442574|ref|YP_002380895.1| DNA polymerase III subunits gamma/tau [Cyanothece sp. PCC 7424]
gi|218175345|gb|ACK74076.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
7424]
Length = 452
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 161/292 (55%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q KY P+T DL+GQN +A L+NA+ K+ Y+F G GTGKTS RI A++L
Sbjct: 3 YQPFHHKYRPQTLNDLIGQNAIATTLTNAITLSKIAPAYLFTGSRGTGKTSTGRILAKSL 62
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC +P PCG CNSC S G S ++ E+ N E I D++ + + +Y
Sbjct: 63 NCVKDNKPTVTPCGECNSCKSIANGSSLDVIELDAASNNSAEGIRDIVSSTQFAPIGRRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+I++ D+ LS + + K ++ P V+FIL ++ L IISRCQ+F F + +
Sbjct: 123 KIWIIDEAHALSSAATQVLLKTLEEPPINVIFILCTTDPSKLGDTIISRCQRFNFKRFNN 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
I+ L+ IA E I I +AL LIA S G +RDA LEQ+SLL ++ V +L+
Sbjct: 183 DVIVNQLEAIAQSEDINISYEALLLIAKHSQGGMRDATCLLEQVSLLSDNVTPVEVHQLL 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS++ L +LL+ + T ++ ++ + G +PL ++ QL T+ L
Sbjct: 243 GTISEDNLFELLNAIALSKTEPIIRIIKQLYADGKDPLVILQQLLEFYTNAL 294
>gi|170078311|ref|YP_001734949.1| DNA-directed DNA polymerase III chain dnaX [Synechococcus sp. PCC
7002]
gi|169885980|gb|ACA99693.1| DNA-directed DNA polymerase III chain dnaX [Synechococcus sp. PCC
7002]
Length = 742
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 194/359 (54%), Gaps = 7/359 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF LVGQ +A LSNA+ +R++ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQTFAQLVGQEAIATTLSNALEQRRIAPAYLFSGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQPKP--CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + QP P CG C C + G + ++ E+ N ++I +L++ + +Y
Sbjct: 63 NCLNAAQPTPHPCGECEVCRAIANGSALDVIEIDAASNTGVDNIRELIERSQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P VVF+L ++ + IISRCQ+F + ++
Sbjct: 123 KVYVIDECHMLSVAAFNALLKTLEEPPAHVVFVLATTDPQRVLPTIISRCQRFDYRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L+ IA E I+I +++ LIA ++G LRDAE L+QLSLL I+ V +LV
Sbjct: 183 DAMVAHLRKIAHLENIDIPLESVTLIAQIANGGLRDAESLLDQLSLLSGEITPDKVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY---- 701
G + + L+ LL + S D ++ R ++ G EPL ++ LA+ ++L
Sbjct: 243 GAVPERDLLQLLQVIHSNDPEAVIQQCRSLLNRGREPLVVLQNLASFYLNLLIAKTAPQR 302
Query: 702 -DFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759
D Q ++ E+ + Q + L E+E QL+ + WL LL L P
Sbjct: 303 GDLIAVTQPTWEILCQEANQWELSTILQGQQHLKESEYQLKNTTQPRLWLEITLLGLLP 361
>gi|407001558|gb|EKE18522.1| hypothetical protein ACD_9C00308G0001, partial [uncultured
bacterium]
Length = 249
Score = 186 bits (473), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 152/239 (63%), Gaps = 5/239 (2%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P TF D++GQ + Q LSNA++ +VG Y+F GP GTGKT+ ARIFARA+NCQ
Sbjct: 5 LYRKYRPLTFSDVIGQGHIVQTLSNAILNNRVGHAYLFTGPRGTGKTTMARIFARAVNCQ 64
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ--YRIF 528
+ + PC C+ C + +G S +I E+ N ++I +L +N+ PPSQ ++++
Sbjct: 65 NPKGADPCLECDVCKNITQGMSLDIFEIDAASNTGVDNIRELRENV--KFPPSQAKFKVY 122
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ LS +++A+ K ++ P V+FIL ++ + +P IISRCQ++ F ++ I
Sbjct: 123 IIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEIHKVPETIISRCQRYDFTRLSLEHI 182
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I L IA E + I+K+AL++IA S+G +RDAE L Q ++L ++I+ V+E++G
Sbjct: 183 IEKLSTIAKNENVSIEKNALEMIAIASEGGMRDAESLLSQVMALEDKKITAKEVEEILG 241
>gi|433444410|ref|ZP_20409324.1| DNA polymerase III, subunits gamma and tau [Anoxybacillus
flavithermus TNO-09.006]
gi|432001607|gb|ELK22481.1| DNA polymerase III, subunits gamma and tau [Anoxybacillus
flavithermus TNO-09.006]
Length = 559
Score = 186 bits (473), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 209/385 (54%), Gaps = 23/385 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L + + P++F+D+VGQ V + L NA++++K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YRALYRVFRPQSFKDVVGQEHVTKTLQNALLQQKISHAYLFSGPRGTGKTSIAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C+ G ++ E+ N + I D+ D + + + Y++
Sbjct: 63 NCEHRPTAEPCNECPTCLGIMNGSISDVLEIDAASNNGVDEIRDIRDKVKFAPTSAPYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P I+SRCQ+F F +++
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIVSRCQRFDFRRIELKS 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L+ + ++EGI+++++AL IA +DG +RDA L+Q +S R+ + V + G
Sbjct: 183 IVSRLKTVVAEEGIDVEEEALFAIARAADGGMRDALSLLDQAISFSDDRVLLEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAG------- 699
+S K+ DL+ TV ++ + +ME G +P L+ L D+L
Sbjct: 243 AVSQRKIADLIYAMYEKKTVEALRLFQDLMEQGKDPNRLVEDLIYYYRDMLLYKAAPQLE 302
Query: 700 --SYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
++ D R+ P S + +A+ LS+++ +R++N + +++L
Sbjct: 303 DVTHRVLVDERFRELSDMIPTS-----FIYEAIDLLSKSQHDMRLTNHPRIHMEVTIVKL 357
Query: 758 APDQQYVLPSSSADTSFSHSPLDLE 782
++++ + S+S+ LDLE
Sbjct: 358 CYEEEHAIKSTSS--------LDLE 374
>gi|299820909|ref|ZP_07052798.1| DNA polymerase III, gamma/tau subunit DnaX [Listeria grayi DSM
20601]
gi|299817930|gb|EFI85165.1| DNA polymerase III, gamma/tau subunit DnaX [Listeria grayi DSM
20601]
Length = 580
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/355 (29%), Positives = 188/355 (52%), Gaps = 5/355 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F+D+VGQ+ V + L NA+++ K+ Y+F GP GTGKTS A++FA+A+
Sbjct: 3 YQALYRVFRPQAFQDIVGQSHVTKTLQNAIVQNKISHAYLFSGPRGTGKTSAAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C++C G + ++ E+ N E I D+ + + + S+Y++
Sbjct: 63 NCERSTDGEPCNECDTCKGITDGSNPDVLEIDAASNNGVEEIRDIREKVKYAPTNSKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
I + I E I+ + AL++I ++G LRDA L+Q+ G + + V E+ G
Sbjct: 183 ITAHMASILDSESIQYEDKALQIIGRAAEGGLRDALSLLDQVISFGSEEVGVEDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ L DL++ + D + L ++ G +P+ L+ L DIL A D
Sbjct: 243 SVAQNLLTDLVEAVMDKDPKQAISTLSSLLAEGKDPVRLVEDLLVFFRDILLYQKAPDLD 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+R K + + +K L++ ++Q+R SN ++ A++Q+
Sbjct: 303 EALERALVDDSFEALAKKADAAVIYHCVKVLNDTQQQMRFSNHPGIYVEVAMVQM 357
>gi|218442642|ref|YP_002380962.1| DNA polymerase III subunits gamma/tau [Cyanothece sp. PCC 7424]
gi|218175000|gb|ACK73732.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
7424]
Length = 462
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 124/368 (33%), Positives = 189/368 (51%), Gaps = 6/368 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L KY P+ F+DL+GQ L+++AL NA+ K+ Y+F GP GTGKTS ARI A+AL
Sbjct: 7 YQPLHLKYRPQQFKDLIGQELISRALKNAIASLKIANSYLFTGPRGTGKTSTARILAKAL 66
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC+S PCG C SC S +RG S N+ E+ + + L++ + +Y
Sbjct: 67 NCKSTPHSTTHPCGKCPSCQSIERGSSINVNEIDAASHNGVDDARSLIEQSHFAPIDGRY 126
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
R+F+ D+C L+ S +A+ K ++ P + VFIL ++ L I SRCQ F F
Sbjct: 127 RVFILDECHMLTNQSQNALLKTIEETPPQCVFILCTTEPHKLLPTISSRCQTFNFKNTSL 186
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L IA +E I D +K IA +++G LRD L LSLL I+ LV +
Sbjct: 187 KTLSQHLTQIAQQENINTTPDGIKAIAVQANGGLRDGLQLLSGLSLLSCEITSDLVIKAT 246
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDF-- 703
+S + + L+ L+ T++ + R ++E G P +++ L D+L DF
Sbjct: 247 NGLSPQTISQLVQKILTGQTLDLLIAGRELIEEGKTPQSILKSLTETYRDLLLLKSDFKC 306
Query: 704 -TKDRHRRKFFRRQPLS-KEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQ 761
T + + L+ E+E L Q L+ L ++E QL+ + + WL LL+L P
Sbjct: 307 HTLISNSSNLTHLKQLADSTELEILDQGLQQLIQSEAQLKTNLNATVWLEICLLKLIPAT 366
Query: 762 QYVLPSSS 769
LP S
Sbjct: 367 PIFLPPIS 374
>gi|443313263|ref|ZP_21042875.1| DNA polymerase III, subunit gamma/tau [Synechocystis sp. PCC 7509]
gi|442776668|gb|ELR86949.1| DNA polymerase III, subunit gamma/tau [Synechocystis sp. PCC 7509]
Length = 629
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 122/363 (33%), Positives = 204/363 (56%), Gaps = 19/363 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ +A L+NA+ + ++ Y+F G GTGKTS ARI +++L
Sbjct: 3 YEPLHHKYRPQTFADLVGQEAIATTLTNAIRKSQIAPAYLFTGSRGTGKTSSARILSKSL 62
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S P KPCG C++C +G + ++ E+ N ++I ++++ + +Y
Sbjct: 63 NCLSSPAPIEKPCGKCDACQGITKGIALDVIEIDAASNTGVDNIREIIERAQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++ D+C LS +++ + K ++ P+ VVFIL ++ + + IISRCQ+F F ++
Sbjct: 123 KVYAIDECHMLSSAAFNCLLKTLEEPPKSVVFILATTDPERVLPTIISRCQRFDFRRIPM 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
I L++IA++E I I DAL+L+A + G LRDAE L+QLSLL I++ V +L
Sbjct: 183 QAIADHLRYIATEEDISISSDALQLVAGLAQGGLRDAESLLDQLSLLSGEITIERVWDLA 242
Query: 646 GLISDEKLVDLLD-LALS-ADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDF 703
G +S++ ++LL+ +AL DT+ +++ R IM+ G EPL ++ LA+ D+L
Sbjct: 243 GSVSEKDCLELLNAIALCHPDTI--LESARKIMDRGREPLIVLQNLASFYRDLLIAKTAP 300
Query: 704 TKDRHRRKFFRRQPLSKEEMEKLRQALKT---------LSEAEKQLRMSNDKLTWLTAAL 754
T R + E + KL ++ L+++E Q++ S WL L
Sbjct: 301 T----RNDLVSLTSATWESLRKLANNVEIATIVNGQQHLAKSEIQIKNSTQPRLWLEVTL 356
Query: 755 LQL 757
L L
Sbjct: 357 LGL 359
>gi|238018439|ref|ZP_04598865.1| hypothetical protein VEIDISOL_00266 [Veillonella dispar ATCC 17748]
gi|237864910|gb|EEP66200.1| hypothetical protein VEIDISOL_00266 [Veillonella dispar ATCC 17748]
Length = 922
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 107/352 (30%), Positives = 185/352 (52%), Gaps = 5/352 (1%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+TF D+VGQ+ V+ L A+ KV Y+F GP GTGKTS A+IFARA+NC+
Sbjct: 6 LYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
PC C++C S G+S ++ E+ N + + L +++ + ++F+
Sbjct: 66 HGPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++W+A+ K ++ P V+FI ++ ++ LP I+SRCQ++ F ++ DI
Sbjct: 126 DEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDDIAQ 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVP-LVQELVGLIS 649
L ++A KEG +D A +LIA +DG LRDA L+Q + + P +V+EL+GL+S
Sbjct: 186 RLSYVAEKEGFGLDPAAAQLIAVHADGGLRDALSILDQCAGMATGTITPQVVEELIGLVS 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR 709
E ++ LD + D + + + G + +M L + +L G D +
Sbjct: 246 KEWIIHFLDALRNGDGPKLLSYIHDALAEGRDATQIMEALIQHVRALLVGKVAPDADELK 305
Query: 710 -RKFFRRQPLSKEE---MEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
F+ + L++ E +L Q +++ + ++ T + LL L
Sbjct: 306 VYDAFKDEFLAQAESIDFNELNQYVRSAQSIMNDAKQVDNPRTIIEMGLLVL 357
>gi|118475796|ref|YP_892947.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
str. Al Hakam]
gi|196041973|ref|ZP_03109260.1| DNA polymerase III, gamma and tau subunit [Bacillus cereus
NVH0597-99]
gi|196047689|ref|ZP_03114893.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
03BB108]
gi|225862075|ref|YP_002747453.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
03BB102]
gi|229089155|ref|ZP_04220438.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-42]
gi|229182417|ref|ZP_04309670.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BGSC 6E1]
gi|376264050|ref|YP_005116762.1| DNA polymerase III subunits gamma and tau [Bacillus cereus F837/76]
gi|118415021|gb|ABK83440.1| DNA polymerase III, tau subunit [Bacillus thuringiensis str. Al
Hakam]
gi|196021474|gb|EDX60177.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
03BB108]
gi|196027228|gb|EDX65848.1| DNA polymerase III, gamma and tau subunit [Bacillus cereus
NVH0597-99]
gi|225787266|gb|ACO27483.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
03BB102]
gi|228601063|gb|EEK58630.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BGSC 6E1]
gi|228694178|gb|EEL47858.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-42]
gi|364509850|gb|AEW53249.1| DNA polymerase III subunits gamma and tau [Bacillus cereus F837/76]
Length = 562
Score = 186 bits (471), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 200/369 (54%), Gaps = 7/369 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S +R++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--AGSYDFT 704
+S + L +L++ D ++ + +M G +P+ M D+L S
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 705 KDRHRRKFFRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
R + + EEM E + + + TLS+ +++++ +N +L ++QL QQ
Sbjct: 303 HMLERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC--QQ 360
Query: 763 YVLPSSSAD 771
+++ ++ D
Sbjct: 361 FMMQANGTD 369
>gi|421874133|ref|ZP_16305740.1| DNA polymerase III, subunits gamma and tau [Brevibacillus
laterosporus GI-9]
gi|372456788|emb|CCF15289.1| DNA polymerase III, subunits gamma and tau [Brevibacillus
laterosporus GI-9]
Length = 593
Score = 186 bits (471), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 141/560 (25%), Positives = 255/560 (45%), Gaps = 46/560 (8%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L + Y P+TF D++GQ V L NA+ ++ Y+F GP GTGKTS A+I A+A+
Sbjct: 3 YTALYRVYRPQTFGDVIGQTHVTTTLQNALREGRLSHAYLFNGPRGTGKTSAAKIMAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NCQ+ + +PC C +CI+ G ++ E+ N E I D+ D + + +Y++
Sbjct: 63 NCQNPQDGEPCNQCPACIAITEGSVTDVLEIDAASNRGVEEIRDIRDKVKFAPSEVKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+FIL ++ LP IISRCQ+F F ++ A+
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPGHVLFILATTEPHKLPATIISRCQRFDFHRISLAE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ LQ I + IE ++ ALKL+A ++G +RDA L+Q +S G ++S V ++ G
Sbjct: 183 MTQRLQHICDAQQIEAEEQALKLVAKMAEGGMRDALSLLDQAISYSGNQVSASDVLKITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+S L + + ++ L IM G +P + L D+L
Sbjct: 243 AVSQAYFSTLGRMISEQNVTGVMEELEKIMSQGKDPEQFLQDLLFYFRDML--------- 293
Query: 707 RHRRKFFRRQPLSKEEMEKL-----------RQALKTLSEAEKQLRMSNDKLTWLTAA-- 753
++ P +E ME+ R AL L E +QL + +L W T A
Sbjct: 294 -----LYKTAPNLEEIMERTLIDEKFPEVANRFALPVLYEVIEQLNQALTQLKWSTFARV 348
Query: 754 LLQLAPDQQYVLPSSSADT---SFSHSPLDLEN-AGGRGMTRKGGERAEISNKETGVPMN 809
L+++ + L +SS+ S ++ N AG R + ++ + P+
Sbjct: 349 LVEMTLVRLCHLSASSSTVGSISVGQEAMEAGNGAGARAVPNTASGGTQVVSSPDVAPLF 408
Query: 810 VRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEE 869
R++ E + GN+ G + G +++ P + G + R + +
Sbjct: 409 ERVKMLE-EKLTQILQGNLVAGGKAASEE--GKQREVRRAMPATGGSKTSMTKVREAVRQ 465
Query: 870 I-----------WLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAE 918
+ W ++L+ ++ K + +V+ A V H K+
Sbjct: 466 VDEGLSQKIRGAWGQILSEVKKVHYKYHAWVVSGQPTVASSDAVIVTFKGSIHCEKTMEP 525
Query: 919 KFKDQILQAFESVLGSPLTI 938
+ + + +AF +V G PL +
Sbjct: 526 ELRGIVERAFLTVTGKPLQL 545
>gi|402554390|ref|YP_006595661.1| DNA polymerase III subunits gamma and tau [Bacillus cereus FRI-35]
gi|401795600|gb|AFQ09459.1| DNA polymerase III subunits gamma and tau [Bacillus cereus FRI-35]
Length = 562
Score = 186 bits (471), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 103/369 (27%), Positives = 200/369 (54%), Gaps = 7/369 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDENVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+S + L +L++ D ++ + +M G +P+ M D+L +
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 707 RHRRKFFRRQPLSK--EEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
+ + EEM E + + + TLS+A+++++ +N +L ++QL QQ
Sbjct: 303 HMLERVMVDEQFRTLSEEMQPEVIYEIIHTLSKAQQEMKWTNHPRIFLEVVMVQLC--QQ 360
Query: 763 YVLPSSSAD 771
+++ ++ AD
Sbjct: 361 FMMQANGAD 369
>gi|124021779|ref|YP_001016086.1| DNA polymerase III subunits gamma/tau [Prochlorococcus marinus str.
MIT 9303]
gi|123962065|gb|ABM76821.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9303]
Length = 604
Score = 186 bits (471), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 119/343 (34%), Positives = 195/343 (56%), Gaps = 7/343 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L KY P+ F LVGQ+ +A LS+A+ ++ Y+F GP GTGKTS ARI AR+L
Sbjct: 5 YQPLHHKYRPQRFDALVGQDAIAATLSHALRSSRIAPAYLFSGPRGTGKTSSARILARSL 64
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + +QP +PCG C C S G + ++ E+ N ++I +L++ + +++
Sbjct: 65 NCLNCDQPTPEPCGNCELCKSIAAGTALDVIEIDAASNTGVDNIRELIERSRFAPVQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RVVF+L ++ + I+SRCQ+F F ++
Sbjct: 125 KVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIPL 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L+ IA++E I I+ +AL ++A R+ G LRDAE L+QLSLL I V EL+
Sbjct: 185 EALEKHLEMIATREAIPINPEALHVVAQRAQGGLRDAESLLDQLSLLPGPIKAEAVWELM 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD--ILAGSYDF 703
G + +++L+ L AD + ++ R ++ G +P AL+ LA V+ D ++ + D
Sbjct: 245 GAVPEQELLKLAAALAQADPLCLLETCRNLLNRGRDPGALLQGLAAVLRDLVLMTAAPDR 304
Query: 704 TKDRHRRKFFRRQ--PLSKE-EMEKLRQALKTLSEAEKQLRMS 743
+ FR Q PL+ + +L Q L +E QLR S
Sbjct: 305 PELTSVSPQFRNQLPPLASQIGRHQLLQWQVQLKGSESQLRHS 347
>gi|148241162|ref|YP_001226319.1| DNA polymerase III subunit gamma/tau [Synechococcus sp. RCC307]
gi|147849472|emb|CAK26966.1| DNA polymerase III gamma/tau subunit [Synechococcus sp. RCC307]
Length = 604
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 174/292 (59%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+ F LVGQ +A LS A+ R ++ Y+F GP GTGKTS ARI AR+L
Sbjct: 3 YEPLHHKYRPQRFDQLVGQEAIAATLSQALQRGRIAPAYLFSGPRGTGKTSSARILARSL 62
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S + P +PCG C C + G + ++ E+ N ++I DL++ + +++
Sbjct: 63 NCLSSDGPTAEPCGTCELCTAIAAGGALDVIEIDAASNTGVDNIRDLIERSRFAPVQARW 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RVVF+L ++ + I+SRCQ+F F ++
Sbjct: 123 KVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L WIA +E I I +A+ L+A + G LRDAE L+QLSLL + V EL+
Sbjct: 183 QALEQHLLWIAEQEAINITPEAVHLVAQLAQGGLRDAESLLDQLSLLPPPVEPEAVWELL 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G + +++L+ L ++D ++ +++ R +++ G EP A++ LA ++ D++
Sbjct: 243 GAVPEQELLQLAAALQASDPLDLLQSCRQLLDRGREPAAVLQGLAGLLRDLV 294
>gi|313894455|ref|ZP_07828020.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral
taxon 158 str. F0412]
gi|313441279|gb|EFR59706.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral
taxon 158 str. F0412]
Length = 856
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/352 (30%), Positives = 185/352 (52%), Gaps = 5/352 (1%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+TF D+VGQ+ V+ L A+ KV Y+F GP GTGKTS A+IFARA+NC+
Sbjct: 6 LYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
PC C++C S G+S ++ E+ N + + L +++ + ++F+
Sbjct: 66 HGPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++W+A+ K ++ P V+FI ++ ++ LP I+SRCQ++ F ++ DI
Sbjct: 126 DEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDDIAQ 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVP-LVQELVGLIS 649
L ++A KEG +D A +LIA +DG LRDA L+Q + + P +V+EL+GL+S
Sbjct: 186 RLSYVAEKEGFGLDPAAAQLIAVHADGGLRDALSILDQCAGMATGTITPQVVEELIGLVS 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR 709
E ++ LD + D + + + G + +M L + +L G D +
Sbjct: 246 KEWIIHFLDALRNGDGPKLLSYIHDALAEGRDATQIMDALIQHVRALLVGKVATDADELK 305
Query: 710 -RKFFRRQPLSKEE---MEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
F+ + L++ E +L Q +++ + ++ T + LL L
Sbjct: 306 VYDAFKAEFLAQAESIDFNELNQYVRSAQSIMNDAKQVDNPRTIIEMGLLVL 357
>gi|336399730|ref|ZP_08580530.1| DNA polymerase III, tau subunit [Prevotella multisaccharivorax DSM
17128]
gi|336069466|gb|EGN58100.1| DNA polymerase III, tau subunit [Prevotella multisaccharivorax DSM
17128]
Length = 604
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 205/377 (54%), Gaps = 11/377 (2%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P TF +VGQ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC++
Sbjct: 9 RKYRPMTFSSVVGQEALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCENP 68
Query: 473 EQP-KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
Q + C C SC + + G+S NI E+ N E+I L++ + +Y++F+ D
Sbjct: 69 TQDGEACNECESCRAFNEGRSMNIFELDAASNNSVENIKTLMEQTLIPPQTGRYKVFIID 128
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+ LS +++A K ++ P V+FIL ++ + + I+SRCQ + F +M +II
Sbjct: 129 EVHMLSQAAFNAFLKTLEEPPAHVIFILATTEKNKILPTILSRCQIYDFERMTVPEIIRH 188
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLISD 650
L+ +A KEGI +++AL +IA ++DG +RDA +Q++ Q I+ V + + ++
Sbjct: 189 LEMVAGKEGITYEEEALNVIAEKADGGMRDALSIFDQVASFCQGHITYEKVLQDLNVLDA 248
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT-----K 705
+ ++DL+L + + L I++ G + +++ LA+ + +++ + T
Sbjct: 249 DNYFKIIDLSLENKAADIMVLLDSIIQRGFDGSNVINGLASHVRNVMMAKDEQTLPLLEV 308
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVL 765
+++R+ ++ Q +K L QALK L+E + Q R S++K + L+++A Q
Sbjct: 309 SQNQRQKYKDQA-AKCPQTFLYQALKILNECDVQYRQSSNKRLLVELTLIRVA---QITQ 364
Query: 766 PSSSADTSFSHSPLDLE 782
P + SP+ L+
Sbjct: 365 PEDEDAPAGGRSPMQLK 381
>gi|392391723|ref|YP_006428325.1| DNA polymerase III subunits gamma and tau [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390522801|gb|AFL98531.1| DNA polymerase III, subunit gamma/tau [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 556
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 166/279 (59%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P+ F+D+VGQ V + L NA+++ KV Y+ GP GTGKT+ A++ A+ALNC+
Sbjct: 6 LYREWRPKNFKDMVGQEHVTKTLMNALVQSKVAHAYLLSGPRGTGKTTTAKVLAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ +PC C SC+S D+G + + E+ N + I DL D + S S+Y++++
Sbjct: 66 HRDGVEPCNQCPSCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAGESKYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P RVVFIL ++ + +P I+SR Q+F F ++ I
Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRISLEQIYK 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
L + G ++D +AL++IA +S+G LRDA L+Q LL ++ V V +++G++ +
Sbjct: 186 HLDKVCQTIGRDVDSEALQIIAQKSEGGLRDALSILDQCLLLDGKLGVEQVYQVLGMVGE 245
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689
E L+D L+ D T+ L + G++P ++ +L
Sbjct: 246 EFSAKLVDHLLARDYAKTLGFLGEGINQGMDPRQIIREL 284
>gi|42779101|ref|NP_976348.1| DNA polymerase III subunits gamma and tau [Bacillus cereus ATCC
10987]
gi|229194413|ref|ZP_04321218.1| DNA polymerase III subunit gamma/tau [Bacillus cereus m1293]
gi|423572834|ref|ZP_17548953.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus MSX-D12]
gi|423608152|ref|ZP_17584044.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD102]
gi|42735016|gb|AAS38956.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus ATCC
10987]
gi|228589069|gb|EEK47082.1| DNA polymerase III subunit gamma/tau [Bacillus cereus m1293]
gi|401216521|gb|EJR23230.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus MSX-D12]
gi|401238564|gb|EJR45002.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD102]
Length = 562
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/369 (27%), Positives = 200/369 (54%), Gaps = 7/369 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+S + L +L++ D ++ + +M G +P+ M D+L +
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 707 RHRRKFFRRQPLSK--EEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
+ + EEM E + + + TLS+A+++++ +N +L ++QL QQ
Sbjct: 303 HMLERVMVDEQFRTLSEEMQPEVIYEIIHTLSKAQQEMKWTNHPRIFLEVVMVQLC--QQ 360
Query: 763 YVLPSSSAD 771
+++ ++ AD
Sbjct: 361 FMMQANGAD 369
>gi|88809301|ref|ZP_01124809.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 7805]
gi|88786520|gb|EAR17679.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 7805]
Length = 587
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 194/346 (56%), Gaps = 12/346 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L KY P+ LVGQ +A L +A+ ++ Y+F GP GTGKTS ARI AR+L
Sbjct: 5 YQPLHHKYRPQRLDQLVGQEAIAATLGHALRSGRIAPAYLFSGPRGTGKTSSARILARSL 64
Query: 468 NCQSLE--QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + E P+PCG C C + G + ++ E+ N ++I DL++ + +++
Sbjct: 65 NCLNSEGPTPEPCGHCELCTTIAAGTALDVIEIDAASNTGVDNIRDLIERSRFAPVQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P +VVF+L ++ + I+SRCQ+F F ++
Sbjct: 125 KVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIPL 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L WIA +E I I +AL ++A R+ G LRDAE L+QLSLL I V +L+
Sbjct: 185 EALERHLTWIAEQETIPIQPEALHVVAQRAQGGLRDAESLLDQLSLLPGPIQADAVWDLL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD--ILAGSYDF 703
G + +++L+ L+ S + V ++ R +++ G + +++ LA ++ D ++A + D
Sbjct: 245 GAVPEQELLALVTAMSSGEPVALLEATRTLLDRGRDAGSVLQGLAGILRDLVLMAAAPD- 303
Query: 704 TKDRHRRKFFRRQPLSKEEMEKLRQAL--KTLSEAEKQLRMSNDKL 747
R + P ++++ +L +A+ L + + QLR + +L
Sbjct: 304 -----RPELTSVSPQFRDQLPELAKAIGRSRLLQWQSQLRGTEQQL 344
>gi|303231330|ref|ZP_07318065.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
ACS-049-V-Sch6]
gi|302514010|gb|EFL56017.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
ACS-049-V-Sch6]
Length = 763
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 190/358 (53%), Gaps = 11/358 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L +KY P+TF D+VGQ+ V+ L A+ KV Y+F GP GTGKTS A+IFARA+
Sbjct: 3 YMALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ PC C+ C S G+S ++ E+ N + I L +++ + ++
Sbjct: 63 NCEHGPTDHPCNECSVCKSILSGQSMDVLEIDAASNRGIDEIRALRESVKFMPVEGRKKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
F+ D+ L+ ++W+A+ K ++ P V+FI ++ ++ LP I+SRCQ++ F ++ D
Sbjct: 123 FIIDEAHMLTNEAWNALLKTIEEPPDHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I LQ++A KEG ++ +A +LIA +DG LRDA L+Q + + I+ +V+EL+G
Sbjct: 183 IAQRLQYVADKEGFALEDNAARLIAVHADGGLRDALSILDQCVGMASGEITPAVVEELIG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL-----ATVITDILAGSY 701
L+S + ++ L + D +K ++ + G + +M L A +I + +
Sbjct: 243 LVSKDWIIKFLSALHNGDGPAVLKYIQNALSEGRDGAQIMEALTQHLRALLIAKVAPDAE 302
Query: 702 DF-TKDRHRRKFFRRQPLSKE-EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ D R +F + +K+ E + Q +K L + ++ T + LL L
Sbjct: 303 ELKVYDSFRTEFLEQ---AKDIEFGTINQYIKQLQSIMSDAKQVDNPRTVIEMGLLVL 357
>gi|269798692|ref|YP_003312592.1| DNA polymerase III subunits gamma/tau [Veillonella parvula DSM
2008]
gi|269095321|gb|ACZ25312.1| DNA polymerase III, subunits gamma and tau [Veillonella parvula DSM
2008]
Length = 895
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 164/290 (56%), Gaps = 1/290 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+TF D+VGQ+ V+ L A+ KV Y+F GP GTGKTS A+IFARA+NC+
Sbjct: 6 LYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
PC C++C S G+S ++ E+ N + + L +++ + ++F+
Sbjct: 66 HGPTDHPCNECSACRSILSGQSMDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++W+A+ K ++ P V+FI ++ ++ LP I+SRCQ++ F ++ DI
Sbjct: 126 DEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDDIAQ 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L ++A KEG ++D A +LIA +DG LRDA L+Q + + I+ +V+EL+GL+S
Sbjct: 186 RLSYVAEKEGFDLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQVVEELIGLVS 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAG 699
E ++ LD + D + + + G + +M L + +L G
Sbjct: 246 KEWIIHFLDALRNGDGPKVLSYVHDALAEGRDATQIMEALIQHVRALLVG 295
>gi|150021275|ref|YP_001306629.1| DNA polymerase III subunits gamma and tau [Thermosipho
melanesiensis BI429]
gi|149793796|gb|ABR31244.1| DNA polymerase III, subunits gamma and tau [Thermosipho
melanesiensis BI429]
Length = 460
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 110/372 (29%), Positives = 196/372 (52%), Gaps = 44/372 (11%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
+ L +KY P+ F +LVGQ+ V + N++ +++ Y+F GP GTGKT+ ARI A++LN
Sbjct: 2 ETLYRKYRPKKFLELVGQSHVKKLFVNSLKNKEISHAYIFAGPRGTGKTTVARILAKSLN 61
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
C++ ++ +PC CN+CIS D+G ++ E+ N + I + + + +Y+++
Sbjct: 62 CENPQEIEPCNMCNACISIDKGNFMDVLELDAASNRGIDEIRKIRETVNYHTAQGKYKVY 121
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ L+ ++++A+ K ++ P VVFIL +++ + +P IISRCQ F + + DI
Sbjct: 122 IIDEAHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQVIDFKNISNKDI 181
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGL 647
I L+++ EGI+I +A+ I+ R++G LRDA LEQ ++ G+ I + V+E +GL
Sbjct: 182 IKRLEFVCENEGIKISHEAIVEISKRANGGLRDALTILEQVINSAGKDIKIEDVRETLGL 241
Query: 648 ISD---EKLVDLLD-------LALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
I D EKL++ L+ L L + + KNL + + +E L + +
Sbjct: 242 IPDTIIEKLLENLENNDIKSTLKLIDEVYYSGKNLEIFLYQTIEKLISLVE--------- 292
Query: 698 AGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
++ H F LK +SE K ++ S +K+T + + L
Sbjct: 293 -------ENNHNYIHF----------------LKPISEILKDIKYSEEKITLVKLGFISL 329
Query: 758 APDQQ-YVLPSS 768
Q Y+ P +
Sbjct: 330 FATQPIYIQPKN 341
>gi|408409587|ref|ZP_11180879.1| DNA polymerase III, gamma/tau subunit [Lactobacillus sp. 66c]
gi|407876256|emb|CCK82685.1| DNA polymerase III, gamma/tau subunit [Lactobacillus sp. 66c]
Length = 648
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 167/291 (57%), Gaps = 1/291 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF +VGQ + L N++ R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDAVVGQEAITDTLKNSIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +C++ D+G +I E+ N + I +LLD + + +Y++
Sbjct: 63 NCLNLQDGEPCNECANCLAADQGAMPDITEMDAASNNSVDEIRELLDKVHYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ L +P IISR Q++ F ++ +AD
Sbjct: 123 YIIDEVHMLSISAFNALLKTLEEPPASVIFILATTELQKVPATIISRTQRYNFKRISNAD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +EG+ + AL +IA +DG +RDA L+Q LS ++ E+ G
Sbjct: 183 LVKRMEYILGQEGVAYEDRALSVIAQVADGGMRDALSILDQLLSFEKDKLLYDDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+ E + LL L+ D + + + G +++++ ++ ++
Sbjct: 243 FAAREDIEQLLLALLNRDAAKALDLAKKAIANGASSQNILNEIISLAVQVM 293
>gi|229027870|ref|ZP_04184027.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1271]
gi|228733446|gb|EEL84271.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1271]
Length = 562
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 200/369 (54%), Gaps = 7/369 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--AGSYDFT 704
+S + L +L++ D ++ + +M G +P+ M D+L S
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 705 KDRHRRKFFRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
R + + EEM E + + + TLS+ +++++ +N +L ++QL QQ
Sbjct: 303 HMLERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC--QQ 360
Query: 763 YVLPSSSAD 771
+++ ++ AD
Sbjct: 361 FMMQANGAD 369
>gi|423399657|ref|ZP_17376830.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG2X1-2]
gi|401658073|gb|EJS75574.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG2X1-2]
Length = 562
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 200/369 (54%), Gaps = 7/369 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--AGSYDFT 704
+S + L +L++ D ++ + +M G +P+ M D+L S
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 705 KDRHRRKFFRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
R + + EEM E + + + TLS+ +++++ +N +L ++QL QQ
Sbjct: 303 HMLERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC--QQ 360
Query: 763 YVLPSSSAD 771
+++ ++ AD
Sbjct: 361 FMMQANGAD 369
>gi|303228652|ref|ZP_07315477.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
ACS-134-V-Col7a]
gi|429759877|ref|ZP_19292372.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica KON]
gi|302516632|gb|EFL58549.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
ACS-134-V-Col7a]
gi|429179097|gb|EKY20359.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica KON]
Length = 804
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 190/358 (53%), Gaps = 11/358 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L +KY P+TF D+VGQ+ V+ L A+ KV Y+F GP GTGKTS A+IFARA+
Sbjct: 3 YMALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ PC C+ C S G+S ++ E+ N + I L +++ + ++
Sbjct: 63 NCEHGPTDHPCNECSVCKSILSGQSMDVLEIDAASNRGIDEIRALRESVKFMPVEGRKKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
F+ D+ L+ ++W+A+ K ++ P V+FI ++ ++ LP I+SRCQ++ F ++ D
Sbjct: 123 FIIDEAHMLTNEAWNALLKTIEEPPDHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I LQ++A KEG ++ +A +LIA +DG LRDA L+Q + + I+ +V+EL+G
Sbjct: 183 IAQRLQYVADKEGFALEDNAARLIAVHADGGLRDALSILDQCVGMASGEITPAVVEELIG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL-----ATVITDILAGSY 701
L+S + ++ L + D +K ++ + G + +M L A +I + +
Sbjct: 243 LVSKDWIIKFLSALHNGDGPAVLKYIQNALSEGRDGAQIMEALTQHLRALLIAKVAPDAE 302
Query: 702 DF-TKDRHRRKFFRRQPLSKE-EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ D R +F + +K+ E + Q +K L + ++ T + LL L
Sbjct: 303 ELKVYDSFRTEFLEQ---AKDIEFGTINQYIKQLQSIMSDAKQVDNPRTVIEMGLLVL 357
>gi|423479653|ref|ZP_17456368.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG6X1-1]
gi|402425015|gb|EJV57174.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG6X1-1]
Length = 562
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 200/369 (54%), Gaps = 7/369 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--AGSYDFT 704
+S + L +L++ D ++ + +M G +P+ M D+L S
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 705 KDRHRRKFFRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
R + + EEM E + + + TLS+ +++++ +N +L ++QL QQ
Sbjct: 303 HMLERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC--QQ 360
Query: 763 YVLPSSSAD 771
+++ ++ AD
Sbjct: 361 FMMQANGAD 369
>gi|409351315|ref|ZP_11234081.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus
equicursoris CIP 110162]
gi|407876823|emb|CCK86139.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus
equicursoris CIP 110162]
Length = 652
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 1/291 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF +VGQ + L N++ R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDAVVGQEAITDTLKNSIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +C++ D+G +I E+ N + I +LLD + + +Y++
Sbjct: 63 NCLNLQDGEPCNECANCLAADQGAMPDITEMDAASNNSVDEIRELLDKVHYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ L +P IISR Q++ F ++ +AD
Sbjct: 123 YIIDEVHMLSISAFNALLKTLEEPPASVIFILATTELQKVPATIISRTQRYNFKRISNAD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +EG+ + AL +IA +DG +RDA L+Q LS ++ E+ G
Sbjct: 183 LVKRMEYILGQEGVAYEDRALYVIAQVADGGMRDALSILDQLLSFEKDKLLYDDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+ E + LL L+ D + + + G +++++ ++ I+
Sbjct: 243 FAAREDIEQLLLALLNRDAAKALDLAKKAIANGASSQNILNEIISLAVQIM 293
>gi|269926492|ref|YP_003323115.1| DNA polymerase III subunits gamma and tau [Thermobaculum terrenum
ATCC BAA-798]
gi|269790152|gb|ACZ42293.1| DNA polymerase III, subunits gamma and tau [Thermobaculum terrenum
ATCC BAA-798]
Length = 550
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 173/290 (59%), Gaps = 2/290 (0%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q+L +KY +TF +LVGQ V + L NA+ K+ Y+F GP GTGKTS AR+ A+A+N
Sbjct: 3 QSLYRKYRSQTFDELVGQEHVKKTLINAIKSGKIAHAYLFCGPRGTGKTSTARLLAKAVN 62
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
C S E KPC C++C+S + G++ ++ E+ E + D+++ + + +Y+++
Sbjct: 63 CLS-EGTKPCNSCSACLSINEGRAVDLIEIDAASRRKVEDVADIIERVNFAPAELRYKVY 121
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ L+ +++A+ K ++ P +F+L ++ + + IISRCQ+F F ++ +I
Sbjct: 122 IIDEVHMLTTHAFNALLKTLEEPPAHAIFVLATTEVWKVLPTIISRCQRFDFRRITPREI 181
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVGL 647
+ L +IA E I+I KDAL IA S GSLRDA L+QL++ G + I++ V++L+G+
Sbjct: 182 VERLAFIAENENIKIQKDALIAIAKASTGSLRDAISILDQLTVYGDEEITLEHVKQLLGI 241
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+ ++ + + + + DT + L + E GV+P +L + + D++
Sbjct: 242 VGEDVVANFVGAIIDNDTQAALSLLTQLSEHGVDPRQFTQELVSYLRDLM 291
>gi|422823748|ref|ZP_16871936.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK405]
gi|422826183|ref|ZP_16874362.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK678]
gi|324993075|gb|EGC24995.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK405]
gi|324995619|gb|EGC27531.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK678]
Length = 556
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 167/292 (57%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + ++ +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKEGEPCNECYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
II ++WI +EGI+ +K+ +++IA R++G +RDA L+Q L Q R++ + +E+
Sbjct: 182 IISHIEWILEQEGIDFEKEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + ++ D V + NL +I ++G +A +TD+L
Sbjct: 242 GSISLGALDAYVAALIAHDAVAALDNLNLIFDSG-------KNMARFVTDLL 286
>gi|229170872|ref|ZP_04298477.1| DNA polymerase III subunit gamma/tau [Bacillus cereus MM3]
gi|423461714|ref|ZP_17438510.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG5X2-1]
gi|228612607|gb|EEK69824.1| DNA polymerase III subunit gamma/tau [Bacillus cereus MM3]
gi|401135272|gb|EJQ42874.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG5X2-1]
Length = 562
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 200/369 (54%), Gaps = 7/369 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--AGSYDFT 704
+S + L +L++ D ++ + +M G +P+ M D+L S
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 705 KDRHRRKFFRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
R + + EEM E + + + TLS+ +++++ +N +L ++QL QQ
Sbjct: 303 HMLERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC--QQ 360
Query: 763 YVLPSSSAD 771
+++ ++ AD
Sbjct: 361 FMMQANGAD 369
>gi|427418507|ref|ZP_18908690.1| DNA polymerase III, subunit gamma/tau [Leptolyngbya sp. PCC 7375]
gi|425761220|gb|EKV02073.1| DNA polymerase III, subunit gamma/tau [Leptolyngbya sp. PCC 7375]
Length = 724
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 162/573 (28%), Positives = 251/573 (43%), Gaps = 54/573 (9%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF LVGQ +A LSNA+ + ++ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQTFAQLVGQGAIATTLSNALQQNRIAPAYLFCGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S E P PCG C C G S +I E+ N ++I +L++ + ++
Sbjct: 63 NCLSSEVPTSTPCGQCQVCREITVGASLDIVEIDAASNTGVDNIRELIERAQFAPVQCRH 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+ LS +++A+ K ++ P VVF+L ++ + IISRCQ+F F ++
Sbjct: 123 KLYVLDEVHMLSTAAFNALLKTLEEPPPHVVFVLATTDPQRVLPTIISRCQRFDFRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L +IA +E I I DAL+L+A S G LRDAE L+QL LL I++ V +LV
Sbjct: 183 DAMVQHLDYIAQQEAIAIAPDALQLVAQLSQGGLRDAESLLDQLGLLDGEITIEAVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G +S+ L+ L+ + D + R +M+ G EPL ++ L D+L
Sbjct: 243 GAVSERDLLALVQAVSADDGAQVLILARQLMDRGREPLMVLQSLVAFYRDLLIAK----T 298
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKT---------LSEAEKQLRMSNDKLTWLTAALLQ 756
RR P EM QAL L AE Q++ + WL L+
Sbjct: 299 AGERRDLVAITPPVWAEMVNFAQALPLPLLLSSQQHLRAAEVQVKNTTQPRLWLEITLMG 358
Query: 757 LAPDQ--QYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVRLEN 814
L P Q + + +P + +T+ +A S P V ++
Sbjct: 359 LLPSALGQVNVATPGVTAPAVTAPGVTAPGVTQSVTQPPMPKAISSPPPVAEPPIVAQKH 418
Query: 815 FHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKS------------------------ 850
E + K S +K G Q K
Sbjct: 419 TPEEKDTAVAPTPVPKPQSEPQKNVVAHGPEPQPKPQEDKAEKGASVVNAQPALTDTDAH 478
Query: 851 ---PLSAGGRHVS-------GNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGA 900
P SA V + I +IW +++ ++Q GTK + ++ KL++ G
Sbjct: 479 IPQPASAVNNSVEQPSAMADAPAMGSINDIWAKIVTQLQPFGTKVLMRQQAKLLTCD-GV 537
Query: 901 APTVQLTFRSHLTKSKAEKFKDQILQAFESVLG 933
TV + RS A+ + AFE V G
Sbjct: 538 EATVGI--RSQPLMRMAQDRLSNVEIAFEKVFG 568
>gi|72383094|ref|YP_292449.1| DNA polymerase III subunit tau [Prochlorococcus marinus str.
NATL2A]
gi|72002944|gb|AAZ58746.1| DNA polymerase III, tau subunit [Prochlorococcus marinus str.
NATL2A]
Length = 565
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 198/364 (54%), Gaps = 13/364 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P +F +LVGQ+ + L A++ ++ Y+F GP GTGKTS ARIFA++L
Sbjct: 5 YEPLHHKYRPTSFDELVGQDPIKSTLKQALISDRIAPAYIFSGPRGTGKTSSARIFAKSL 64
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC E+ PCG C C G + ++ E+ N E+I +L++ + +++
Sbjct: 65 NCLKSEKATTTPCGQCELCKGISSGNALDVIEIDAASNTGVENIRELIERSRFAPAKARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ PR+VVFIL ++ + I+SRC +F F ++
Sbjct: 125 KVYVIDECHMLSTAAFNALLKTLEEPPRQVVFILATTDPQRVLPTILSRCMRFDFRRIAL 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
D+ L IA KE I+I+++A+ LIA S G LRDAE L+Q+SLL I+ + L+
Sbjct: 185 HDLESHLINIAKKEEIQINEEAISLIAKHSQGGLRDAESLLDQVSLLPPPITQLNIINLI 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY---- 701
G I +E+L+ L ++ D + + ++ G EP+A++ +A+++ D++
Sbjct: 245 GAIPEEELIILAKSLITKDPNSILNICNSLINKGKEPIAILQGIASILRDLVVTKVTNKP 304
Query: 702 ----DFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ +++ F + +++ L+ LK +E +R SN WL LL +
Sbjct: 305 TNLCNISQEHSESLNFLATSSNLDQILNLQAKLKG---SESNIRNSNQPNLWLEIHLLGM 361
Query: 758 APDQ 761
D+
Sbjct: 362 LSDE 365
>gi|401679099|ref|ZP_10811032.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. ACP1]
gi|400219681|gb|EJO50543.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. ACP1]
Length = 808
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 161/283 (56%), Gaps = 1/283 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L +KY P+TF D+VGQ+ V+ L A+ KV Y+F GP GTGKTS A+IFARA+
Sbjct: 3 YMALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ PC C+ C S G+S ++ E+ N + I L +++ + ++
Sbjct: 63 NCEHGPTDHPCNECSVCKSILSGQSMDVLEIDAASNRGIDEIRALRESVKFMPVEGRKKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
F+ D+ L+ ++W+A+ K ++ P V+FI ++ ++ LP I+SRCQ++ F ++ D
Sbjct: 123 FIIDEAHMLTNEAWNALLKTIEEPPDHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I LQ++A KEG ++ +A +LIA +DG LRDA L+Q + + I+ +V+EL+G
Sbjct: 183 IAQRLQYVADKEGFALEDNAARLIAVHADGGLRDALSILDQCVGMASGEITPAIVEELIG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689
L+S + ++ L D +K ++ + G + +M L
Sbjct: 243 LVSKDWIIKFLSALHDGDGPAVLKYIQNALSEGRDGAQIMEAL 285
>gi|206978353|ref|ZP_03239227.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
H3081.97]
gi|217957599|ref|YP_002336141.1| DNA polymerase III subunits gamma and tau [Bacillus cereus AH187]
gi|228983278|ref|ZP_04143493.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229136866|ref|ZP_04265495.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST26]
gi|375282120|ref|YP_005102553.1| DNA polymerase III subunits gamma and tau [Bacillus cereus NC7401]
gi|423357849|ref|ZP_17335439.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus IS075]
gi|423374923|ref|ZP_17352260.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus AND1407]
gi|423572589|ref|ZP_17548767.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus MSX-A12]
gi|206743445|gb|EDZ54878.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
H3081.97]
gi|217064851|gb|ACJ79101.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH187]
gi|228646601|gb|EEL02806.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST26]
gi|228776458|gb|EEM24809.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|358350641|dbj|BAL15813.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus NC7401]
gi|401073698|gb|EJP82112.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus IS075]
gi|401093298|gb|EJQ01407.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus AND1407]
gi|401195947|gb|EJR02896.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus MSX-A12]
Length = 562
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 200/369 (54%), Gaps = 7/369 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--AGSYDFT 704
+S + L +L++ D ++ + +M G +P+ M D+L S
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 705 KDRHRRKFFRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
R + + EEM E + + + TLS+ +++++ +N +L ++QL QQ
Sbjct: 303 HMLERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC--QQ 360
Query: 763 YVLPSSSAD 771
+++ ++ AD
Sbjct: 361 FMMQANGAD 369
>gi|422858638|ref|ZP_16905288.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1057]
gi|327459781|gb|EGF06121.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1057]
Length = 556
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 167/292 (57%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + ++ +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKEGEPCNECYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
II ++WI +EGI+ +K+ +++IA R++G +RDA L+Q L Q R++ + +E+
Sbjct: 182 IISHIEWILEQEGIDFEKEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + ++ D V + NL +I ++G +A +TD+L
Sbjct: 242 GSISLGALDAYVAALIAHDAVAALDNLNLIFDSG-------KNMARFVTDLL 286
>gi|227513703|ref|ZP_03943752.1| DNA polymerase III subunit gamma/tau [Lactobacillus buchneri ATCC
11577]
gi|227522507|ref|ZP_03952556.1| DNA polymerase III subunit gamma/tau [Lactobacillus hilgardii ATCC
8290]
gi|227083022|gb|EEI18334.1| DNA polymerase III subunit gamma/tau [Lactobacillus buchneri ATCC
11577]
gi|227090329|gb|EEI25641.1| DNA polymerase III subunit gamma/tau [Lactobacillus hilgardii ATCC
8290]
Length = 630
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 174/307 (56%), Gaps = 4/307 (1%)
Query: 400 LGDNRNGR---HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGK 456
+ D++ G +Q L + + P+ F ++VGQ+++ Q L NA++ +++ Y+F GP GTGK
Sbjct: 34 INDSKGGSEMSYQALYRVWRPQRFDEIVGQSIITQTLKNAILTKQISHAYLFTGPRGTGK 93
Query: 457 TSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNM 516
TS A+IFA+A+NC LE +PC C +C + + G ++ E+ N E I D+ D +
Sbjct: 94 TSAAKIFAKAVNCHYLEDGEPCNKCETCRAINEGSLSDVIEIDAASNNGVEEIRDIRDKV 153
Query: 517 VTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576
+ + Y++++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR Q
Sbjct: 154 KYAPTKADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQ 213
Query: 577 KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR 635
KF F +++ DI+ + +I ++ IE D ALKLIA ++G +RDA L+Q +S +
Sbjct: 214 KFDFKRIRPEDILERMAYILKQKNIEYDDKALKLIAKAAEGGMRDALSILDQAMSYGDDK 273
Query: 636 ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD 695
++ ++ G +++E L ++ + DT N + ++ +++ G + + L + D
Sbjct: 274 VTYENALQVTGSVTNELLTTYVEQVIKKDTKNALITVQKVLDNGKDASRFVEDLTSYCQD 333
Query: 696 ILAGSYD 702
IL D
Sbjct: 334 ILLYQQD 340
>gi|384177928|ref|YP_005563690.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|324324012|gb|ADY19272.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 562
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/369 (27%), Positives = 200/369 (54%), Gaps = 7/369 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+S + L +L++ D ++ + +M G +P+ M D+L +
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 707 RHRRKFFRRQPLSK--EEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
+ + EEM E + + + TLS+A+++++ +N +L ++QL QQ
Sbjct: 303 HMLERVMVDEQFRTLSEEMQPEVIYEIIHTLSKAQQEMKWTNHPRIFLEVVMVQLC--QQ 360
Query: 763 YVLPSSSAD 771
+++ ++ AD
Sbjct: 361 FMMQANGAD 369
>gi|227510687|ref|ZP_03940736.1| DNA polymerase III subunit gamma/tau [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227189808|gb|EEI69875.1| DNA polymerase III subunit gamma/tau [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 630
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 174/307 (56%), Gaps = 4/307 (1%)
Query: 400 LGDNRNGR---HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGK 456
+ D++ G +Q L + + P+ F ++VGQ+++ Q L NA++ +++ Y+F GP GTGK
Sbjct: 34 INDSKGGSEMSYQALYRVWRPQRFDEIVGQSIITQTLKNAILTKQISHAYLFTGPRGTGK 93
Query: 457 TSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNM 516
TS A+IFA+A+NC LE +PC C +C + + G ++ E+ N E I D+ D +
Sbjct: 94 TSAAKIFAKAVNCHYLEDGEPCNKCETCRAINEGSLSDVIEIDAASNNGVEEIRDIRDKV 153
Query: 517 VTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576
+ + Y++++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR Q
Sbjct: 154 KYAPTKADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQ 213
Query: 577 KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR 635
KF F +++ DI+ + +I ++ IE D ALKLIA ++G +RDA L+Q +S +
Sbjct: 214 KFDFKRIRPEDILERMAYILKQKNIEYDDKALKLIAKAAEGGMRDALSILDQAMSYGDDK 273
Query: 636 ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD 695
++ ++ G +++E L ++ + DT N + ++ +++ G + + L + D
Sbjct: 274 VTYENALQVTGSVTNELLTTYVEQVIKKDTKNALITVQKVLDNGKDASRFVEDLTSYCQD 333
Query: 696 ILAGSYD 702
IL D
Sbjct: 334 ILLYQQD 340
>gi|385825345|ref|YP_005861687.1| DNA polymerase III subunit gamma/tau [Lactobacillus johnsonii DPC
6026]
gi|329666789|gb|AEB92737.1| DNA polymerase III subunit gamma/tau [Lactobacillus johnsonii DPC
6026]
Length = 602
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 191/355 (53%), Gaps = 10/355 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF +VGQ + L NA+ R K+ ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +C++ D+G +I E+ N + I D+ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECENCLAADQGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+I + +I +E I+ ++ AL++IA +DG +RD+ L+Q LS ++ + G
Sbjct: 183 LIARMTYILDQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYEDALRITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV-ITDILAGSYDFTK 705
+ EK+ +L L+ +T ++ + +++ G ++ +L ++ + +LA K
Sbjct: 243 YAAQEKIEQVLLNLLNGETSAALEIVHALLQDGASTKNILDELISLTVKGMLA-----IK 297
Query: 706 DRHRRKFFRRQ---PLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
F L+K EK ++ + A LR +N + L ++Q+
Sbjct: 298 SNKEETFLTENYASELAKIPEEKFYSLVQAANNALNDLRYTNQQQIPLDVFVVQV 352
>gi|335031226|ref|ZP_08524676.1| DNA polymerase III, subunit gamma and tau [Streptococcus anginosus
SK52 = DSM 20563]
gi|333770144|gb|EGL47201.1| DNA polymerase III, subunit gamma and tau [Streptococcus anginosus
SK52 = DSM 20563]
Length = 554
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/344 (31%), Positives = 186/344 (54%), Gaps = 17/344 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQEVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKGGEPCNECYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
I+ + WI +E I+ + +A+++IA R++G +RDA L+Q L Q +++ + +E+
Sbjct: 182 IVEHIAWILQQENIDFENEAVQIIARRAEGGMRDALSILDQALSLTQDNQLTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT- 704
G IS E L + L+ DT +KNL VI ++G +A +TD+L D
Sbjct: 242 GSISLEALDAYVAAVLAHDTSVALKNLDVIFDSG-------KNMARFVTDLLQYLRDLLI 294
Query: 705 -----KDRHRRKFFRRQPLSKEE--MEKLRQALKTLSEAEKQLR 741
++ H + F + +E E + A K+L+E + L+
Sbjct: 295 VKTGGENTHTSESFLENLKTPQERLFELIEIATKSLAEIKNSLQ 338
>gi|428224128|ref|YP_007108225.1| DNA polymerase III subunit tau [Geitlerinema sp. PCC 7407]
gi|427984029|gb|AFY65173.1| DNA polymerase III, tau subunit [Geitlerinema sp. PCC 7407]
Length = 676
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 136/502 (27%), Positives = 240/502 (47%), Gaps = 31/502 (6%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TFR LVGQ+ +A L NA+ +R++ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQTFRGLVGQDAIATTLGNAIRQRRIAPAYLFSGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + P PCG C C + +G + ++ E+ N ++I ++++ + +Y
Sbjct: 63 NCIKGDLPTEDPCGVCEVCRAIAQGSAMDVIEIDAASNTGVDNIREIIERAQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P VVF+L ++ + IISRCQ+F F ++
Sbjct: 123 KVYVIDECHMLSTAAFNALLKTLEEPPAHVVFVLATTDPQRVLPTIISRCQRFDFRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L IA KE I++ ++A++L+A S G LRDAE L+QLSLL +++V V +LV
Sbjct: 183 EAMVGHLMAIAEKESIDVTEEAVRLVAQVSQGGLRDAESLLDQLSLLDGQVTVDRVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G + + L+ L + + D + + R +M+ G EPL ++ LA+ D+L
Sbjct: 243 GAVPERDLLALAEAIAADDATRVLDDARHLMDRGREPLIVLQNLASFYRDLLIAK----T 298
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQAL---------KTLSEAEKQLRMSNDKLTWLTAALLQ 756
R P + + + Q+L + L +E Q++ + WL LL
Sbjct: 299 APDRPDLVALTPPTWQRLCAFVQSLDLGVILRAQQHLRASEGQVKNTTQPRLWLEVTLLG 358
Query: 757 LAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRK----GGERAEISNKETGVPMNVRL 812
L P ++ S +P+ A G T + G P++
Sbjct: 359 LLP------------SALSAAPVPATGAPGAAQTLRPIAAPAPIPAPVTAPVGAPISAPA 406
Query: 813 ENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWL 872
A + + + A + P +A + + +IW
Sbjct: 407 PTTDAVSRSEPAPTPASAAAPAPEPSPEPAVAAAPRDRPEAAPMSDPIADLGVDLGQIWQ 466
Query: 873 EVLNRIQNNGTKEFLYREGKLI 894
+++ +Q GT+E L ++ +L+
Sbjct: 467 QIITNLQPRGTQELLRQQCRLV 488
>gi|294792632|ref|ZP_06757779.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 6_1_27]
gi|294456531|gb|EFG24894.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 6_1_27]
Length = 901
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 163/290 (56%), Gaps = 1/290 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+TF D+VGQ+ V+ L A+ KV Y+F GP GTGKTS A+IFARA+NC+
Sbjct: 6 LYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
PC C++C S G+S ++ E+ N + I L +++ + ++F+
Sbjct: 66 YGPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEIRALRESVKFMPVEGRKKVFII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++W+A+ K ++ P V+FI ++ ++ LP I+SRCQ++ F ++ DI
Sbjct: 126 DEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDDIAQ 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L ++A KEG +D A +LIA +DG LRDA L+Q + + I+ +V+EL+GL+S
Sbjct: 186 RLSYVAEKEGFGLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQVVEELIGLVS 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAG 699
E ++ LD + D + + + G + +M L + +L G
Sbjct: 246 KEWIIHFLDALRNGDGPKVLSYVHDALAEGRDATQIMEALIQHVRALLVG 295
>gi|229153802|ref|ZP_04281934.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 4342]
gi|228629671|gb|EEK86366.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 4342]
Length = 558
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 200/369 (54%), Gaps = 7/369 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--AGSYDFT 704
+S + L +L++ D ++ + +M G +P+ M D+L S
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 705 KDRHRRKFFRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
R + + EEM E + + + TLS+ +++++ +N +L ++QL QQ
Sbjct: 303 HMLERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC--QQ 360
Query: 763 YVLPSSSAD 771
+++ ++ AD
Sbjct: 361 FMMQANGAD 369
>gi|282849744|ref|ZP_06259128.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula ATCC
17745]
gi|282580681|gb|EFB86080.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula ATCC
17745]
Length = 902
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 163/290 (56%), Gaps = 1/290 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+TF D+VGQ+ V+ L A+ KV Y+F GP GTGKTS A+IFARA+NC+
Sbjct: 6 LYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
PC C++C S G+S ++ E+ N + + L +++ + ++F+
Sbjct: 66 HGPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++W+A+ K ++ P V+FI ++ ++ LP I+SRCQ++ F ++ DI
Sbjct: 126 DEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDDIAQ 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L ++A KEG +D A +LIA +DG LRDA L+Q + + I+ +V+EL+GL+S
Sbjct: 186 RLSYVAEKEGFSLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQVVEELIGLVS 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAG 699
E ++ LD + D + + + G + +M L + +L G
Sbjct: 246 KEWIIHFLDALRNGDGPKVLSYVHDALAEGRDATQIMEALIQHVRALLVG 295
>gi|434389609|ref|YP_007100220.1| DNA polymerase III, subunit gamma/tau [Chamaesiphon minutus PCC
6605]
gi|428020599|gb|AFY96693.1| DNA polymerase III, subunit gamma/tau [Chamaesiphon minutus PCC
6605]
Length = 706
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 120/362 (33%), Positives = 194/362 (53%), Gaps = 23/362 (6%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L KY P+TF DLVGQ ++ L+NA+ K+ Y+F GP GTGKTS ARI A++LNC
Sbjct: 6 LHHKYRPQTFADLVGQEAISTTLTNALRLEKIAPAYLFTGPRGTGKTSSARILAKSLNCM 65
Query: 471 SLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
+ + P +PCG C +C + G + +I E+ N ++I +L++ + +Y+++
Sbjct: 66 ASDVPTAQPCGKCETCSAIAVGAALDIIEIDAASNTGVDNIRELIERAQYAPVQCRYKVY 125
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+C L+ +++++ K ++ P RVVF+L ++ + IISRCQ+F + ++ +
Sbjct: 126 IIDECHMLTTAAFNSLLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQRFDYRRIPVEAM 185
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLI 648
+ L +IA E IEID ++KLIA + G LRDAE L++LSLL I+ V + +G +
Sbjct: 186 VKHLTYIAGNESIEIDAASIKLIAQIAQGGLRDAESLLDRLSLLSGEITPDRVYDAIGSV 245
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY-DFTKDR 707
+ L+D+L AD + R I+E G EPL ++ LAG Y D T +
Sbjct: 246 PERDLLDILQSIDRADPEQLLDRTRQILERGKEPLTVLQN--------LAGCYRDLTIAK 297
Query: 708 HRRKFFRRQPLSKEEMEKLRQALKT------------LSEAEKQLRMSNDKLTWLTAALL 755
+ L+ E +L + KT L ++E QL+ + WL A+L
Sbjct: 298 TAPQRADLVALTSESWTELAKIAKTWQLSQILTGQKHLKDSEIQLKHTTQPQLWLEIAIL 357
Query: 756 QL 757
L
Sbjct: 358 GL 359
>gi|148238398|ref|YP_001223785.1| DNA polymerase III subunit gamma/tau [Synechococcus sp. WH 7803]
gi|147846937|emb|CAK22488.1| DNA polymerase III gamma/tau subunit [Synechococcus sp. WH 7803]
Length = 621
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 194/346 (56%), Gaps = 12/346 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L KY P+ LVGQ +A L +A+ ++ Y+F GP GTGKTS ARI AR+L
Sbjct: 5 YQPLHHKYRPQRLDQLVGQEAIAATLGHALRSGRIAPAYLFSGPRGTGKTSSARILARSL 64
Query: 468 NCQSLE--QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + E P+PCG C C + G + ++ E+ N ++I DL++ + +++
Sbjct: 65 NCLNSEGPTPEPCGHCELCTTIAAGTALDVIEIDAASNTGVDNIRDLIERSRFAPVQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P +VVF+L ++ + I+SRCQ+F F ++
Sbjct: 125 KVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIPL 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L WIA +E I I +AL ++A R+ G LRDAE L+QLSLL I V +L+
Sbjct: 185 EALERHLTWIAEQETIPIQPEALHVVAQRAQGGLRDAESLLDQLSLLPGPIQAEAVWDLL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD--ILAGSYDF 703
G + +++L+ L+ S + V ++ R +++ G + +++ LA ++ D ++A + D
Sbjct: 245 GAVPEQELLALVAAMRSGEPVALLEATRNLLDRGRDAGSVLQGLAGILRDLVLMAAAPD- 303
Query: 704 TKDRHRRKFFRRQPLSKEEMEKLRQAL--KTLSEAEKQLRMSNDKL 747
R + P ++++ +L +A+ L + + QLR + +L
Sbjct: 304 -----RPELTSVSPQFRDQLPELAKAIGRSRLLQWQSQLRGTEQQL 344
>gi|417836966|ref|ZP_12483206.1| DNA polymerase III subunit gamma and tau [Lactobacillus johnsonii
pf01]
gi|338762645|gb|EGP13912.1| DNA polymerase III subunit gamma and tau [Lactobacillus johnsonii
pf01]
Length = 602
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 191/355 (53%), Gaps = 10/355 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF +VGQ + L NA+ R K+ ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +C++ D+G +I E+ N + I D+ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECENCLAADQGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+I + +I +E I+ ++ AL++IA +DG +RD+ L+Q LS ++ + G
Sbjct: 183 LIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYEDALRITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV-ITDILAGSYDFTK 705
+ EK+ +L L+ +T ++ + +++ G ++ +L ++ + +LA K
Sbjct: 243 YAAQEKIEQVLLNLLNGETSAALEIVHALLQDGASTKNILDELISLTVKGMLA-----IK 297
Query: 706 DRHRRKFFRRQ---PLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
F L+K EK ++ + A LR +N + L ++Q+
Sbjct: 298 SNKEETFLTENYASELAKIPEEKFYSLVQAANNALNDLRYTNQQQIPLDVFVVQV 352
>gi|323344967|ref|ZP_08085191.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella oralis ATCC
33269]
gi|323094237|gb|EFZ36814.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella oralis ATCC
33269]
Length = 597
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 118/355 (33%), Positives = 188/355 (52%), Gaps = 12/355 (3%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS- 471
+KY P TF +VGQ+ + L NAV K+ Y+F GP G GKT+CARIFA+A+NCQ+
Sbjct: 9 RKYRPMTFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCQNP 68
Query: 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFV 529
E + C C SC + + +S NI E+ N E+I L++ T PP +Y++F+
Sbjct: 69 TETGEACNECESCKAFNEQRSYNIFELDAASNNSVENIKALMEQ--TRIPPQVGKYKVFI 126
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ LS +++A K ++ P V+FIL ++ + IISRCQ + F +M I+
Sbjct: 127 IDEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTIISRCQIYDFERMSVQGIV 186
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLI 648
L+ +A KEGI + AL +IA ++DG +RDA +Q + Q I+ V E + ++
Sbjct: 187 DHLKMVADKEGITYEDQALSIIAEKADGGMRDALSIFDQAASFCQGNITYKKVIEDLNVL 246
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT---- 704
E +++DL+L + L I+ G + L++ LA I ++L + T
Sbjct: 247 DAENYFNIVDLSLQNKVAEIMVLLNSIISKGFDGGHLINGLAAHIRNVLMAKDEQTLPLL 306
Query: 705 -KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R +R FR Q + K L ALK L++ + R S++K + L+Q+A
Sbjct: 307 EVSRQQRDKFREQAV-KAPTAFLYNALKILNQCDINYRQSSNKRLLVELTLIQVA 360
>gi|417000436|ref|ZP_11940652.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula
ACS-068-V-Sch12]
gi|333976138|gb|EGL77010.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula
ACS-068-V-Sch12]
Length = 901
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 163/290 (56%), Gaps = 1/290 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+TF D+VGQ+ V+ L A+ KV Y+F GP GTGKTS A+IFARA+NC+
Sbjct: 6 LYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
PC C++C S G+S ++ E+ N + + L +++ + ++F+
Sbjct: 66 HGPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++W+A+ K ++ P V+FI ++ ++ LP I+SRCQ++ F ++ DI
Sbjct: 126 DEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDDIAQ 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L ++A KEG +D A +LIA +DG LRDA L+Q + + I+ +V+EL+GL+S
Sbjct: 186 RLSYVAEKEGFGLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQVVEELIGLVS 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAG 699
E ++ LD + D + + + G + +M L + +L G
Sbjct: 246 KEWIIHFLDALRNGDGPKVLSYVHDALAEGRDATQIMEALIQHVRALLVG 295
>gi|294794411|ref|ZP_06759547.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 3_1_44]
gi|294454741|gb|EFG23114.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 3_1_44]
Length = 892
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 186/352 (52%), Gaps = 5/352 (1%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+TF D+VGQ+ V+ L A+ KV Y+F GP GTGKTS A+IFARA+NC+
Sbjct: 6 LYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
PC C++C S G+S ++ E+ N + + L +++ + ++F+
Sbjct: 66 QGPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++W+A+ K ++ P V+FI ++ ++ LP I+SRCQ++ F ++ DI
Sbjct: 126 DEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDDIAQ 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L ++A KEG +D A +LIA +DG LRDA L+Q + + I+ +V+EL+GL+S
Sbjct: 186 RLSYVAEKEGFGLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQVVEELIGLVS 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR 709
E ++ LD + D + + + G + +M L + +L G D +
Sbjct: 246 KEWIIHFLDALRNGDGPKVLSYVHDALAEGRDATQIMEALIQHVRALLVGKVAPDADELK 305
Query: 710 -RKFFRRQPLSKE---EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
F+ + L++ + +L Q +++ + ++ T + LL L
Sbjct: 306 VYDAFKNEFLAQANSVDFNELNQYVRSAQSIMNDAKQVDNPRTIIEMGLLVL 357
>gi|217077772|ref|YP_002335490.1| DNA polymerase III gamma and tau subunit [Thermosipho africanus
TCF52B]
gi|419760371|ref|ZP_14286650.1| DNA polymerase III subunits gamma and tau [Thermosipho africanus
H17ap60334]
gi|217037627|gb|ACJ76149.1| DNA polymerase III, gamma and tau subunit [Thermosipho africanus
TCF52B]
gi|407514474|gb|EKF49289.1| DNA polymerase III subunits gamma and tau [Thermosipho africanus
H17ap60334]
Length = 480
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/351 (30%), Positives = 184/351 (52%), Gaps = 25/351 (7%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q L +KY P+ F ++VGQN V N++ ++ Y+F GP GTGKT+ ARI A++LN
Sbjct: 2 QALYRKYRPKLFSEVVGQNHVKTLFLNSLKNGEISHAYIFAGPRGTGKTTVARILAKSLN 61
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
C++ +PC CN+C S D G ++ E+ N + I + + + Y+++
Sbjct: 62 CENKNGVEPCNKCNTCQSIDNGSFMDVLEIDAASNRGIDEIRKIRETVGYHAAQGNYKVY 121
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ L+ ++++A+ K ++ P VVFIL +++ + +P IISRCQ F + DI
Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQVIDFKNLTIEDI 181
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-ISVPLVQELVGL 647
I L+++ KE I I ++AL IA R++G +RDA LEQ+S + I++ V+E +GL
Sbjct: 182 IKRLEFVCKKENINISQEALNEIAKRANGGMRDALTILEQVSKSSSKDITIEDVRETLGL 241
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEP-LALMSQLATVITDILAGSYDFTKD 706
+ E + +++D D T + + + +G +P + LM L +I I +G Y+
Sbjct: 242 VPIEVINEMIDSIKIGDIKKTTEIIEKVYFSGKDPEVFLMQLLEEMILKIESGDYE---- 297
Query: 707 RHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
L + LK LSE K ++ S +KL + L +
Sbjct: 298 -------------------LIEFLKPLSEILKDIKYSEEKLILIKLGFLSV 329
>gi|354559342|ref|ZP_08978592.1| DNA polymerase III, subunits gamma and tau [Desulfitobacterium
metallireducens DSM 15288]
gi|353542931|gb|EHC12391.1| DNA polymerase III, subunits gamma and tau [Desulfitobacterium
metallireducens DSM 15288]
Length = 556
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/368 (29%), Positives = 197/368 (53%), Gaps = 12/368 (3%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P+ F ++VGQ V + L+NA+ + K+ Y+F GP GTGKT+ A++ A+ALNC+
Sbjct: 6 LYREWRPKNFSEMVGQEHVTKTLTNALKQEKIAHAYLFSGPRGTGKTTAAKVLAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ +PC C+SC+S D+G + + E+ N + I +L +N+ S +Y++++
Sbjct: 66 NPGGVEPCNQCSSCLSIDQGNAMEVLEIDAASNRGIDEIRELRENVRLSAGEGKYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P+RVVFIL ++ + +P I+SR Q+F F ++ I
Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPKRVVFILATTEVQKIPLTILSRVQRFEFHRIPLEQIET 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
LQ + + +ALK+IA +S+G LRDA L+Q LL I V V +++G++ +
Sbjct: 186 RLQEVCQSIDRTVLPEALKIIAQKSEGGLRDALSILDQCLLLDGDIGVEHVYQVLGMVGE 245
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRR 710
E LLD+ L+ D + L + G +P ++ + + +L HR
Sbjct: 246 EYSAQLLDILLTRDYAQALGLLTEGINQGRDPRQILKEFMEYLRQVL-----LYVSTHRV 300
Query: 711 KF----FRRQPLSKEEMEKLRQALKTLS---EAEKQLRMSNDKLTWLTAALLQLAPDQQY 763
F + + + + E +R L+ +S E QL+ +++ L+Q+ D Q
Sbjct: 301 PFVAPQLKEKIVEQSEQAGMRLVLQWISILLHGESQLKYASNARLATEMLLVQMIYDTQE 360
Query: 764 VLPSSSAD 771
PS S +
Sbjct: 361 GTPSGSEE 368
>gi|381183647|ref|ZP_09892365.1| DNA polymerase III subunits gamma and tau [Listeriaceae bacterium
TTU M1-001]
gi|380316455|gb|EIA19856.1| DNA polymerase III subunits gamma and tau [Listeriaceae bacterium
TTU M1-001]
Length = 574
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/355 (30%), Positives = 193/355 (54%), Gaps = 5/355 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P++F D+VGQ+ V + L NA+ + K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQSFDDVVGQSHVTKTLQNAITQNKTSHAYLFSGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ +PC C+ C G + ++ E+ N E I D+ + + + S+Y+I
Sbjct: 63 NCENSTNGEPCNECDVCKGITDGSNPDVLEIDAASNNGVEEIRDIREKVKYAPTVSKYKI 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTKD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
I+ + +I ++E I D+ AL +IA ++G +RDA L+Q+ G +SV E+ G
Sbjct: 183 IVQRMAYILNEEKITFDEKALMIIARAAEGGMRDALSLLDQVISYGSDEVSVQDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ L DL+ L+ D +++ L ++ G +P+ L+ L DIL A + +
Sbjct: 243 SVAQNLLTDLVAAILNQDASLSMERLSSLLLEGKDPVRLVEDLLVFFRDILLYQKAPNLE 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
T +R R+ ++ + ++ L++ Q+R SN ++ A++ L
Sbjct: 303 ETLERAVPDEPFRELAKSATASQIYKGVELLNKTTTQMRFSNHPGIYVEVAIVML 357
>gi|37521178|ref|NP_924555.1| DNA polymerase III gamma and tau subunits [Gloeobacter violaceus
PCC 7421]
gi|35212174|dbj|BAC89550.1| DNA polymerase III gamma and tau subunits [Gloeobacter violaceus
PCC 7421]
Length = 632
Score = 184 bits (466), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 193/358 (53%), Gaps = 11/358 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+ F D+VGQ + L+NA+ ++ Y+F G GTGKT+ AR+ A+AL
Sbjct: 3 YEPLHHKYRPQRFGDVVGQGPIVTTLTNALKAGRIAHAYLFTGSRGTGKTTTARLIAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC P PCG C C++ G + ++ E+ N ++I +L++ + S+ ++
Sbjct: 63 NCIHGPTPDPCGRCEQCLAIATGSALDVIEIDAASNTGVDNIRELIERAQFAPVQSRQKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++ + K ++ P V F+L ++ + +ISRCQ+F F ++ D
Sbjct: 123 YILDEVHMLSSAAFNCLLKTLEEPPAHVTFVLATTDPQKVLPTVISRCQRFDFRRIPLTD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGL 647
++ L+ IA KE I+I+ +A++L+A + G LRDAE L+QL+LL I + +LVG
Sbjct: 183 MVKHLEEIAWKEDIDIEHEAVELVAQIAQGGLRDAESLLDQLALLEGTIGAERIWQLVGA 242
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS------- 700
+ + +L+ + + + D+ ++ +R ++++G EPL ++ L D+L
Sbjct: 243 VPERELLVIGECIQAGDSTRLIEQVRRLLDSGKEPLQVLQDLLGFYRDLLIAHTAPDRRD 302
Query: 701 -YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
T ++ R + LS ++ L++ L+ +AE Q++ S WL LL L
Sbjct: 303 LVAVTAASWQQMCERAKTLSIPQLLALQERLR---QAEPQIKTSTQPRLWLEVGLLGL 357
>gi|423410751|ref|ZP_17387871.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus BAG3O-2]
gi|423433465|ref|ZP_17410469.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus BAG4O-1]
gi|401109483|gb|EJQ17406.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus BAG3O-2]
gi|401111702|gb|EJQ19586.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus BAG4O-1]
Length = 562
Score = 184 bits (466), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 102/369 (27%), Positives = 198/369 (53%), Gaps = 7/369 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+S + L +L++ D ++ + +M G +P+ M D+L +
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 707 RHRRKFFRRQPLSK--EEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
+ K EEM E + + + TLS+ +++++ +N +L ++QL QQ
Sbjct: 303 HMLERVIVDNQFRKLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC--QQ 360
Query: 763 YVLPSSSAD 771
+++ ++ D
Sbjct: 361 FMMQANGTD 369
>gi|431792084|ref|YP_007218989.1| DNA polymerase III subunits gamma and tau [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430782310|gb|AGA67593.1| DNA polymerase III, subunit gamma/tau [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 560
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 156/589 (26%), Positives = 281/589 (47%), Gaps = 60/589 (10%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P+ FRD+VGQ V + L NA+ + KV Y+F GP GTGKT+ A++ A+ALNC+
Sbjct: 6 LYREWRPKNFRDMVGQEHVTKTLINALAQNKVAHAYLFSGPRGTGKTTTAKVLAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ +PC C SC+S D+G + + E+ N + I DL D + S S+ ++++
Sbjct: 66 HRDGVEPCNQCASCLSIDQGSAMEVYEIDAASNRGIDEIRDLRDKVRLSAGESKTKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P RVVFIL ++ + +P I+SR Q+F F ++ I
Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRIPLEQIQN 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
L+ + G ++D++AL++IA +S+G LRDA L+Q LL ++ V V +++G++ +
Sbjct: 186 HLEKVCQAIGRDVDEEALQVIAQKSEGGLRDALSILDQCLLLDGKLGVVQVYQVLGMVGE 245
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--AGSYDFTKDRH 708
E L+D + T+ L + G++P ++ +L + L A + F +
Sbjct: 246 EFSAQLVDQLAEGNYAATLARLGDGINQGMDPRQIIRELLEYLRQALLYAATQAFPQIAP 305
Query: 709 RRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSS 768
K K ++ L Q + L + E QL+ + + L A LL + V+ S
Sbjct: 306 HLKEKLAFQCEKIGLKTLLQWIGILLQGESQLKYAAN--ARLAAELLLVQ-----VIYDS 358
Query: 769 SADTSFSHSPLDLEN-----------AGGRGMTRKGGERAEISNKETGVPMNVRLENFHA 817
D S SP L+ + G + ++ + + KE + + HA
Sbjct: 359 EKDGS-QDSPQVLQRLQEIEEEIKNLSKGHVIQKESRQDSAPKLKEAALGPTPSKKESHA 417
Query: 818 ENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNR 877
+++ +D N D +R + S ++QQ I+ W +VL +
Sbjct: 418 KSTTQPLDHN-------DSERQSHSPQSIQQ------------------IQGRWNDVLEQ 452
Query: 878 I--QNNGTKEFLYREGKLISVSF-GAAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGS 934
+ + T FL EGK + + G + H K K ++ ++ I Q +S+ G
Sbjct: 453 VRKEKKSTHAFLM-EGKPVELDGDGLVIVFKDGLSFHRDKVKQKENRETIEQVLKSLFGC 511
Query: 935 PLTIEI-------RCESKIDTQAG---FHLPLMLPASKDGSSQMVIDSE 973
LT++ + ES + +AG PL+ A+ S +V+ E
Sbjct: 512 SLTLQCVLEGEYGKGESSANPEAGDDSLENPLLKKAADLFGSDLVVIKE 560
>gi|268318939|ref|YP_003292595.1| DNA polymerase III, gamma and tau subunits [Lactobacillus johnsonii
FI9785]
gi|262397314|emb|CAX66328.1| DNA polymerase III, gamma and tau subunits [Lactobacillus johnsonii
FI9785]
Length = 602
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 191/355 (53%), Gaps = 10/355 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF +VGQ + L NA+ R K+ ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +C++ D+G +I E+ N + I D+ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECENCLAADQGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+I + +I +E I+ ++ AL++IA +DG +RD+ L+Q LS ++ + G
Sbjct: 183 LIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYEDALRITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV-ITDILAGSYDFTK 705
+ EK+ +L L+ +T ++ + +++ G ++ +L ++ + +LA K
Sbjct: 243 YAAQEKIEQVLLNLLNGETSAALEIVHALLQDGASTKNILDELISLTVKGMLA-----IK 297
Query: 706 DRHRRKFFRRQ---PLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
F L+K EK ++ + A LR +N + L ++Q+
Sbjct: 298 SNKEETFLTEDYVSELTKIPEEKFYSLVQAANNALNDLRYTNQQQIPLDVFVVQV 352
>gi|124026832|ref|YP_001015947.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. NATL1A]
gi|123961900|gb|ABM76683.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. NATL1A]
Length = 565
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 115/362 (31%), Positives = 195/362 (53%), Gaps = 9/362 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P +F +LVGQ+ + L A++ ++ Y+F GP GTGKTS ARIFA++L
Sbjct: 5 YEPLHHKYRPTSFDELVGQDPIKSTLKQALISDRIAPAYIFSGPRGTGKTSSARIFAKSL 64
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC E+ PCG C C G + ++ E+ N E+I +L++ + +++
Sbjct: 65 NCLKSEKATTTPCGQCELCKGISSGNALDVIEIDAASNTGVENIRELIERSRFAPAKARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ PR+VVFIL ++ + I+SRC +F F ++
Sbjct: 125 KVYVIDECHMLSTAAFNALLKTLEEPPRQVVFILATTDPQRVLPTILSRCMRFDFRRIAL 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
D+ L IA KE I+I+++A+ LIA S G LRDAE L+Q+SLL I+ + L+
Sbjct: 185 HDLESHLIKIAKKEEIQINEEAISLIAKHSQGGLRDAESLLDQVSLLPPPITQLNIINLI 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G I +E+L+ L ++ D + + ++ G EP+A++ +A+++ D++ K
Sbjct: 245 GAIPEEELIILAKSLITKDPNSILNICNSLINKGKEPIAILQGIASILRDLVVTKVT-NK 303
Query: 706 DRHRRKFFRRQPLSKEEM---EKLRQALK---TLSEAEKQLRMSNDKLTWLTAALLQLAP 759
+ R S ++ L Q L L +E +R SN WL LL +
Sbjct: 304 PTNLCNISREHSESLNDLATSSNLDQILNLQAKLKGSESNIRNSNQPNLWLEIHLLGMLT 363
Query: 760 DQ 761
D+
Sbjct: 364 DE 365
>gi|423556980|ref|ZP_17533283.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus MC67]
gi|401193969|gb|EJR00969.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus MC67]
Length = 562
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 195/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ K Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVGYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTSEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S L DL++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQRYLGDLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRTLIEEMQP------EAIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ AD
Sbjct: 357 LC--QQFMMQANGAD 369
>gi|229188307|ref|ZP_04315358.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 10876]
gi|228595175|gb|EEK52943.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 10876]
Length = 562
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 198/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S + L +L++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R+ QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRKLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ D
Sbjct: 357 LC--QQFMMQANGTD 369
>gi|229176622|ref|ZP_04304028.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 172560W]
gi|228606852|gb|EEK64267.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 172560W]
Length = 562
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 198/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S + L +L++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R+ QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRKLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ D
Sbjct: 357 LC--QQFMMQANGTD 369
>gi|419776538|ref|ZP_14302460.1| DNA polymerase III, subunit gamma and tau [Streptococcus
intermedius SK54]
gi|383845949|gb|EID83349.1| DNA polymerase III, subunit gamma and tau [Streptococcus
intermedius SK54]
Length = 554
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 118/374 (31%), Positives = 199/374 (53%), Gaps = 26/374 (6%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQKVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCSHQKNGEPCNECYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
I+ ++WI +E I + DA+++IA R++G +RDA L+Q L Q +++ + +E+
Sbjct: 182 IVAHVEWILQQENIGFENDAVQVIARRAEGGMRDALSILDQALSLTQDNQLTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT- 704
G IS L + L DT ++NL VI ++G +A +TD+L D
Sbjct: 242 GSISLGALDAYVTAVLMHDTSAALENLDVIFDSG-------KNMARFVTDLLQYLRDLLI 294
Query: 705 -----KDRHRRKFFRRQPLSKEE--MEKLRQALKTLSEAEKQL--RMSNDKLTWLTAALL 755
++ H + F + +E E + A K+LSE + L ++ + +T +
Sbjct: 295 VKTGGENPHISEIFLANLNTPQERLFELIEIATKSLSEIKNSLQPKIYTEMMT------I 348
Query: 756 QLAPDQQYV-LPSS 768
+LA +QQ V LPS+
Sbjct: 349 RLAEEQQKVELPSN 362
>gi|206972679|ref|ZP_03233619.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH1134]
gi|206732399|gb|EDZ49581.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH1134]
Length = 562
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 198/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S + L +L++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R+ QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRKLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ D
Sbjct: 357 LC--QQFMMQANGTD 369
>gi|157414264|ref|YP_001485130.1| DNA polymerase, subunits gamma and tau [Prochlorococcus marinus
str. MIT 9215]
gi|157388839|gb|ABV51544.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9215]
Length = 586
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 112/366 (30%), Positives = 199/366 (54%), Gaps = 15/366 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H+ QKY P +LVGQ ++ L A++ +K+ Y+F GP GTGKTS ARIFA++L
Sbjct: 5 HKPFHQKYRPNNLDELVGQKFISITLKEALLTQKIAPAYLFNGPRGTGKTSSARIFAKSL 64
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + ++P PC C+ C G + +I E+ N E+I ++++ + +++
Sbjct: 65 NCLAFDKPTINPCCKCDLCRQITDGNALDIIEIDAASNTGVENIREIIERARFAPTQARW 124
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS + +A+ K ++ P RV+FIL +++ + + + I SRCQKF F ++
Sbjct: 125 KVYVIDECHMLSTAASNALLKTIEEPPSRVIFILATTNPERVLNTIQSRCQKFDFRRISP 184
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
DI L IA KE IE + ALK+IA RS+G +RDA+ LEQL+LL + I++ +Q L+
Sbjct: 185 GDIFQHLSEIAEKESIEYEVQALKMIAKRSNGGMRDAQSLLEQLNLLQEGITINNIQNLL 244
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G +S+ +L +L+ + + + + + + G EP ++ L + D+L +T
Sbjct: 245 GEVSEIELTNLIQSLVENNPESLIITCNKLYDAGNEPNQIIIGLLNITRDLLL----YTT 300
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQAL---------KTLSEAEKQLRMSNDKLTWLTAALLQ 756
+ + ++E++K+ + + L E Q++ S++ W L
Sbjct: 301 NNKYSDLYYTSDEFQDELDKISKTINKSTIINWHNNLRNIEYQIKTSDNPRLWFEIHLTG 360
Query: 757 LAPDQQ 762
L +Q+
Sbjct: 361 LLNNQE 366
>gi|42518518|ref|NP_964448.1| DNA polymerase III subunit gamma/tau [Lactobacillus johnsonii NCC
533]
gi|41582803|gb|AAS08414.1| DNA polymerase III subunit gamma/tau [Lactobacillus johnsonii NCC
533]
Length = 602
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 191/355 (53%), Gaps = 10/355 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF +VGQ + L NA+ R K+ ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +C++ D+G +I E+ N + I D+ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECENCLAADQGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+I + +I +E I+ ++ AL++IA +DG +RD+ L+Q LS ++ + G
Sbjct: 183 LIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYEDALRITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV-ITDILAGSYDFTK 705
+ EK+ +L L+ T ++ + +++ G ++ +L ++ + +LA K
Sbjct: 243 YAAQEKIEQVLLNLLNGKTSAALEIVHALLQDGASTKNILDELISLTVKGMLA-----IK 297
Query: 706 DRHRRKFFRRQ---PLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
F L+K EK ++ ++A LR +N + L ++Q+
Sbjct: 298 SNKEETFLTENYASELAKIPEEKFYSLVQAANKALNDLRYTNQQQIPLDVFVVQV 352
>gi|222093792|ref|YP_002527840.1| DNA polymerase iii subunits gamma and tau [Bacillus cereus Q1]
gi|221237838|gb|ACM10548.1| dna polymerase iii, gamma and tau subunits [Bacillus cereus Q1]
Length = 504
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 200/369 (54%), Gaps = 7/369 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--AGSYDFT 704
+S + L +L++ D ++ + +M G +P+ M D+L S
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 705 KDRHRRKFFRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
R + + EEM E + + + TLS+ +++++ +N +L ++QL QQ
Sbjct: 303 HMLERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC--QQ 360
Query: 763 YVLPSSSAD 771
+++ ++ AD
Sbjct: 361 FMMQANGAD 369
>gi|326390316|ref|ZP_08211875.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
ethanolicus JW 200]
gi|325993593|gb|EGD52026.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
ethanolicus JW 200]
Length = 518
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 109/363 (30%), Positives = 197/363 (54%), Gaps = 9/363 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q+L +KY PR+F+++VGQ + + L N + +K+G Y+F G GTGKTS A+IFA+A+
Sbjct: 2 YQSLYRKYRPRSFKEVVGQEHIVRTLKNQIKLKKIGHAYLFTGTRGTGKTSVAKIFAKAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + + + ++ E+ N + +L ++++ S ++Y++
Sbjct: 62 NCLNNKDGEPCNSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYSPSIAKYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ D LP I+SRCQ+F F K+
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFKKIPTRL 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I L+ I I+I++ LK IA +GS+RDA LEQ + + I+ V E++G
Sbjct: 182 IAQNLEKICIDSNIKIEEKGLKTIALYGNGSMRDAISLLEQCASYKEGLITYEDVCEMLG 241
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+ +DE L LLD + D ++K L I+ G++ + L ++ D++ Y +
Sbjct: 242 VANDEMLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRDMVL--YKTGGE 299
Query: 707 RHRRKFFRRQPLSKEEMEK-----LRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA-PD 760
+ + KE ++ L AL+ + +K++R + LT L +L+L P+
Sbjct: 300 ELKEILYSDVETVKERVQNFGTAFLTNALEKFTNLQKEVRYAISPLTLLEVTILRLIKPE 359
Query: 761 QQY 763
Y
Sbjct: 360 ISY 362
>gi|322385297|ref|ZP_08058942.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus cristatus
ATCC 51100]
gi|417921787|ref|ZP_12565277.1| DNA polymerase III, subunit gamma and tau [Streptococcus cristatus
ATCC 51100]
gi|321270556|gb|EFX53471.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus cristatus
ATCC 51100]
gi|342833672|gb|EGU67952.1| DNA polymerase III, subunit gamma and tau [Streptococcus cristatus
ATCC 51100]
Length = 554
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/344 (30%), Positives = 186/344 (54%), Gaps = 17/344 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKDGEPCNDCYICKAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSMAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
II ++WI +EGI+ +++ +++IA R++G +RDA L+Q L Q R++ + +E+
Sbjct: 182 IIGHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT- 704
G IS L + ++ D V + NL +I ++G +A +TD+L D
Sbjct: 242 GSISLGALDAYVAALIAHDAVTALDNLNLIFDSG-------KNMARFVTDLLQYLRDLII 294
Query: 705 -----KDRHRRKFFRRQPLSKEE--MEKLRQALKTLSEAEKQLR 741
++ H + F + +E ++ A K+L++ + L+
Sbjct: 295 VKTGGENTHASELFLENLKTPQETLFAMIKTATKSLADIKNSLQ 338
>gi|164686926|ref|ZP_02210954.1| hypothetical protein CLOBAR_00526 [Clostridium bartlettii DSM
16795]
gi|164604029|gb|EDQ97494.1| DNA polymerase III, subunit gamma and tau [Clostridium bartlettii
DSM 16795]
Length = 551
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 153/259 (59%), Gaps = 1/259 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H+ L + Y P+ F D++GQ + + L N + VG Y+F G GTGKTS A+IF+RA+
Sbjct: 5 HKALYRVYRPKNFSDVIGQEHIVRTLKNQIENNNVGHAYLFCGTRGTGKTSTAKIFSRAV 64
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L +PC C +C K+ ++ E+ N + I +L +N+ S ++Y++
Sbjct: 65 NCTNLHNDEPCNECENCREILEDKTMDVVEIDAASNNSVDDIRELRENVKYSPAKAKYKV 124
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P I+SRCQ+F F ++ D
Sbjct: 125 YIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRFDFKRVTVKD 184
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I +++I KEGIE D+ AL LIA S G+LRDA L+Q +S G +IS V EL+G
Sbjct: 185 ISSRMRYICEKEGIEADEKALNLIARNSQGALRDALSILDQCISFEGNKISYNDVIELLG 244
Query: 647 LISDEKLVDLLDLALSADT 665
++ E+L DL + + DT
Sbjct: 245 SVNIEQLFDLAESIIKEDT 263
>gi|227888769|ref|ZP_04006574.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
gi|227850606|gb|EEJ60692.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
Length = 602
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 166/286 (58%), Gaps = 1/286 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF +VGQ + L NA+ R K+ ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +C++ D+G +I E+ N + I D+ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECENCLAADQGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+I + +I +E I+ ++ AL++IA +DG +RD+ L+Q LS ++ + G
Sbjct: 183 LIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYEDALRITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV 692
+ EK+ +L L+ +T ++ + +++ G ++ +L ++
Sbjct: 243 YAAQEKIEQVLLNLLNGETSAALEIVHALLQDGASTKNILDELISL 288
>gi|326802965|ref|YP_004320783.1| DNA polymerase III, subunit gamma and tau [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651277|gb|AEA01460.1| DNA polymerase III, subunit gamma and tau [Aerococcus urinae
ACS-120-V-Col10a]
Length = 641
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 195/360 (54%), Gaps = 13/360 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+ F D+VGQ V++ L NA+ + K Y+F GP GTGKTS A+IFA+A+
Sbjct: 13 YQALYRKWRPQIFADIVGQEAVSRTLKNAINQDKTSHAYLFNGPRGTGKTSAAKIFAKAI 72
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C + G+ ++ E+ N E I D+ D + + + Y++
Sbjct: 73 NCPNQNDGEPCNECHLCQAITEGRLADVIEIDAASNNGVEEIRDIRDKVRYAPTEANYKV 132
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P RV+FIL ++ +P +ISR Q+F F ++ +
Sbjct: 133 YIIDEVHMLSTGAFNALLKTLEEPPSRVIFILATTEAHKIPATVISRTQRFDFKRLSNQA 192
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I + +I +EG+ + +AL+LIA ++G +RDA L+Q+ Q I+ + +++ G
Sbjct: 193 IKDRMAYILGQEGVTYEAEALELIAQDANGGMRDALSLLDQVISFSQGEITTAMTRQVTG 252
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-------AG 699
++SDE+ + ++ DT + LR I++ G E + ++ D+L A
Sbjct: 253 ILSDEQKIAYVEALGQGDTDQALAVLRQILQAGREASRFVEEMLLFTRDLLLAKQSQGAK 312
Query: 700 SYDFTKDRHRRKFFRRQPLSKE-EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
D K+ + + F+ L+K + + + Q +K ++ +R + +L A ++LA
Sbjct: 313 DTDLMKN-YDQSFY---DLAKNLDRDLIYQMMKEFRSVQEDIRFAIQGDIYLEVATIKLA 368
>gi|167038580|ref|YP_001666158.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116975|ref|YP_004187134.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166857414|gb|ABY95822.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319930066|gb|ADV80751.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 518
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 108/363 (29%), Positives = 197/363 (54%), Gaps = 9/363 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q+L +KY PR+F+++VGQ + + L N + +K+G Y+F G GTGKTS A+IFA+A+
Sbjct: 2 YQSLYRKYRPRSFKEVVGQEHIVRTLKNQIKLKKIGHAYLFTGTRGTGKTSVAKIFAKAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + + + ++ E+ N + +L ++++ + ++Y++
Sbjct: 62 NCLNNKDGEPCNSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQAKYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ D LP I+SRCQ+F F ++
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFKRIPTRL 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I L I + GI+I++ LK IA +GS+RDA LEQ + + I+ V E++G
Sbjct: 182 IAQNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKEGLITYEDVCEMLG 241
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+ +DE L LLD + D ++K L I+ G++ + L ++ D++ Y +
Sbjct: 242 VANDEMLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRDMVL--YKTGGE 299
Query: 707 RHRRKFFRRQPLSKEEMEK-----LRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA-PD 760
+ + KE ++ L AL+ +K++R + LT L +L+L P+
Sbjct: 300 ELKEILYSDVETVKERVQNFGTAFLTNALEKFINLQKEVRYAISPLTLLEVTILRLIKPE 359
Query: 761 QQY 763
Y
Sbjct: 360 ISY 362
>gi|423456654|ref|ZP_17433504.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG5X1-1]
gi|401128741|gb|EJQ36429.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG5X1-1]
Length = 562
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 196/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ K Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVGYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S ++++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEAEALQIVARAAEGGMRDALSLIDQAISYSDEKVTSEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S L DL++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQRYLGDLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRTLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ AD
Sbjct: 357 LC--QQFMMQANGAD 369
>gi|423399576|ref|ZP_17376771.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG2X1-1]
gi|423410260|ref|ZP_17387407.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG2X1-3]
gi|401643401|gb|EJS61099.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG2X1-1]
gi|401648850|gb|EJS66443.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG2X1-3]
Length = 562
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 103/372 (27%), Positives = 201/372 (54%), Gaps = 13/372 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPAHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++++AL+++A ++G +RDA ++Q +S ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEEEALQIVARAAEGGMRDALSLIDQAISYSDDAVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+S + L +L++ D ++ + +M G +P+ M D+L +
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 707 RHRRKF-----FRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759
+ FR + EEM E + + + +LS+ +++++ +N +L ++QL
Sbjct: 303 HMLERVIVDDQFR---MLSEEMQPEVIYEIIHSLSKGQQEMKWTNHPRIFLEVVMVQLC- 358
Query: 760 DQQYVLPSSSAD 771
QQ+++ ++ AD
Sbjct: 359 -QQFMMQANGAD 369
>gi|428314446|ref|YP_007125422.1| DNA polymerase III subunits gamma and tau [Microcoleus sp. PCC
7113]
gi|428256058|gb|AFZ22016.1| DNA polymerase III, subunit gamma/tau [Microcoleus sp. PCC 7113]
Length = 519
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 121/362 (33%), Positives = 196/362 (54%), Gaps = 15/362 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L QKY P+TF LVGQ+ +A L+NA+ +++ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YQPLHQKYRPQTFAQLVGQDAIATTLTNAIRLQRIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC S +QP PCG C C + S ++ E+ N ++I L+++ + +Y
Sbjct: 63 NCLSTDQPTVNPCGECEVCRAIASSSSLDVIEIDAASNTGVDNIRTLIESAQFTPMMCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++F+ D+ LS + +A+ K ++ P RVVFIL +++ + L IISR Q+F F ++
Sbjct: 123 KVFLIDEAHMLSTQALNALLKTLEEPPSRVVFILATTNAERLLPTIISRTQRFDFRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L+ IA E I+I AL L+A + G LRDA+ L+QLSLL ++I+ V ELV
Sbjct: 183 NAMVQHLKAIAELESIDITPQALNLVAQIASGGLRDAQSLLDQLSLLPKQITPETVWELV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G +S+ + L++ D + R +++ G+EPL ++ L + ++L T
Sbjct: 243 GAVSESDSIALIEALTLKDFTALLCVTRRLVDAGIEPLTILQTLTSSCRELLIALTSPT- 301
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQ---------ALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
R P S E++ +L Q L+ L +QL + + WL A LL
Sbjct: 302 ---RLDLVTVSPQSWEKLCELAQHWDITALQHTLQQLQVGSRQLTNTQVPVLWLEAVLLS 358
Query: 757 LA 758
++
Sbjct: 359 VS 360
>gi|229159197|ref|ZP_04287223.1| DNA polymerase III subunit gamma/tau [Bacillus cereus R309803]
gi|228624278|gb|EEK81078.1| DNA polymerase III subunit gamma/tau [Bacillus cereus R309803]
Length = 562
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 103/369 (27%), Positives = 199/369 (53%), Gaps = 7/369 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLVDQAISYSDETVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--AGSYDFT 704
+S + L +L++ D ++ + +M G +P+ M D+L S
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 705 KDRHRRKFFRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
R + + EEM E + + + TLS+ +++++ +N +L ++QL QQ
Sbjct: 303 HMLERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC--QQ 360
Query: 763 YVLPSSSAD 771
+++ ++ D
Sbjct: 361 FMMQANGTD 369
>gi|228950570|ref|ZP_04112706.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229067786|ref|ZP_04201105.1| DNA polymerase III subunit gamma/tau [Bacillus cereus F65185]
gi|229077295|ref|ZP_04209978.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock4-2]
gi|423428127|ref|ZP_17405153.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG3X2-2]
gi|423438904|ref|ZP_17415885.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG4X12-1]
gi|423508396|ref|ZP_17484954.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus HD73]
gi|449086688|ref|YP_007419129.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar kurstaki str. HD73]
gi|228706018|gb|EEL58323.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock4-2]
gi|228715339|gb|EEL67196.1| DNA polymerase III subunit gamma/tau [Bacillus cereus F65185]
gi|228809113|gb|EEM55596.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|401106193|gb|EJQ14157.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG3X2-2]
gi|401115528|gb|EJQ23377.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG4X12-1]
gi|402440109|gb|EJV72103.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus HD73]
gi|449020445|gb|AGE75608.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar kurstaki str. HD73]
Length = 562
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 198/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S + L +L++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R+ QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRKLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ D
Sbjct: 357 LC--QQFMMQANGTD 369
>gi|319938988|ref|ZP_08013352.1| DNA polymerase III subunit gamma/tau [Streptococcus anginosus
1_2_62CV]
gi|319812038|gb|EFW08304.1| DNA polymerase III subunit gamma/tau [Streptococcus anginosus
1_2_62CV]
Length = 554
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 108/344 (31%), Positives = 186/344 (54%), Gaps = 17/344 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQEVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
I+ ++WI +E I+ + +A+++IA R++G +RDA L+Q L Q +++ + +E+
Sbjct: 182 IVEHIEWILQQENIDFENEAVQIIARRAEGGMRDALSILDQALSLTQDNQLTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT- 704
G IS L + L+ DT +KNL VI ++G +A +TD+L D
Sbjct: 242 GSISLGALDAYVAAVLAHDTSVALKNLDVIFDSG-------KNMARFVTDLLQYFRDLLI 294
Query: 705 -----KDRHRRKFFRRQPLSKEE--MEKLRQALKTLSEAEKQLR 741
++ H + F + +E E + A K+L+E + L+
Sbjct: 295 VKTGGENTHTSESFLENLKTPQERLFELIEIATKSLAEIKNSLQ 338
>gi|315221642|ref|ZP_07863561.1| DNA polymerase III, subunit gamma and tau [Streptococcus anginosus
F0211]
gi|315189293|gb|EFU22989.1| DNA polymerase III, subunit gamma and tau [Streptococcus anginosus
F0211]
Length = 554
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 108/344 (31%), Positives = 186/344 (54%), Gaps = 17/344 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQEVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
I+ ++WI +E I+ + +A+++IA R++G +RDA L+Q L Q +++ + +E+
Sbjct: 182 IVEHIEWILQQENIDFENEAVQIIARRAEGGMRDALSILDQALSLTQDNQLTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT- 704
G IS L + L+ DT +KNL VI ++G +A +TD+L D
Sbjct: 242 GSISLGALDAYVAAVLAHDTSVALKNLDVIFDSG-------KNMARFVTDLLQYFRDLLI 294
Query: 705 -----KDRHRRKFFRRQPLSKEE--MEKLRQALKTLSEAEKQLR 741
++ H + F + +E E + A K+L+E + L+
Sbjct: 295 VKTGGENTHTSESFLENLKTPQERLFELIEIATKSLAEIKNSLQ 338
>gi|423618794|ref|ZP_17594627.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD115]
gi|401252486|gb|EJR58745.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD115]
Length = 562
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 103/372 (27%), Positives = 201/372 (54%), Gaps = 13/372 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++++AL+++A ++G +RDA ++Q +S ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEEEALQIVARAAEGGMRDALSLIDQAISYSDDAVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+S + L +L++ D ++ + +M G +P+ M D+L +
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 707 RHRRKF-----FRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759
+ FR + EEM E + + + +LS+ +++++ +N +L ++QL
Sbjct: 303 HMLERVIVDDQFR---MLSEEMQPEVIYEIIHSLSKGQQEMKWTNHPRIFLEVVMVQLC- 358
Query: 760 DQQYVLPSSSAD 771
QQ+++ ++ AD
Sbjct: 359 -QQFMMQANGAD 369
>gi|365164199|ref|ZP_09360282.1| DNA polymerase III, subunit gamma and tau [Bacillus sp.
7_6_55CFAA_CT2]
gi|363612801|gb|EHL64328.1| DNA polymerase III, subunit gamma and tau [Bacillus sp.
7_6_55CFAA_CT2]
Length = 562
Score = 182 bits (463), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 198/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S + L +L++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R+ QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRKLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ D
Sbjct: 357 LC--QQFMMQANGTD 369
>gi|422882123|ref|ZP_16928579.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK355]
gi|332361887|gb|EGJ39690.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK355]
Length = 556
Score = 182 bits (463), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 166/292 (56%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVATTLRQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
II ++WI +EGI+ +++ +++IA R++G +RDA L+Q L Q R++ + +E+
Sbjct: 182 IIGHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + ++ D V + NL +I ++G +A +TD+L
Sbjct: 242 GSISLGALDAYVAALIAHDAVAALDNLNLIFDSG-------KNMARFVTDLL 286
>gi|422860315|ref|ZP_16906959.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK330]
gi|327469511|gb|EGF14980.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK330]
Length = 556
Score = 182 bits (463), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 166/292 (56%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
II ++WI +EGI+ +++ +++IA R++G +RDA L+Q L Q R++ + +E+
Sbjct: 182 IITHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + ++ D V + NL +I ++G +A +TD+L
Sbjct: 242 GSISLGALDAYVAALIAHDVVAALDNLNLIFDSG-------KNMARFVTDLL 286
>gi|228937325|ref|ZP_04099973.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228970211|ref|ZP_04130872.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228976781|ref|ZP_04137195.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis Bt407]
gi|384184106|ref|YP_005570002.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
serovar chinensis CT-43]
gi|410672395|ref|YP_006924766.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis Bt407]
gi|423386988|ref|ZP_17364243.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG1X1-2]
gi|423526680|ref|ZP_17503125.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus HuB1-1]
gi|423583676|ref|ZP_17559787.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD014]
gi|423633646|ref|ZP_17609299.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD156]
gi|452196399|ref|YP_007476480.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
gi|228782943|gb|EEM31107.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis Bt407]
gi|228789512|gb|EEM37430.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228822350|gb|EEM68330.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326937815|gb|AEA13711.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
serovar chinensis CT-43]
gi|401208472|gb|EJR15236.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD014]
gi|401282713|gb|EJR88611.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD156]
gi|401630437|gb|EJS48239.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG1X1-2]
gi|402454898|gb|EJV86685.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus HuB1-1]
gi|409171524|gb|AFV15829.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis Bt407]
gi|452101792|gb|AGF98731.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
Length = 562
Score = 182 bits (463), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 198/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S + L +L++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R+ QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRKLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ D
Sbjct: 357 LC--QQFMMQANGTD 369
>gi|323351733|ref|ZP_08087387.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
VMC66]
gi|322122219|gb|EFX93945.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
VMC66]
Length = 556
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 166/292 (56%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKDGEPCNDCYICKAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
II ++WI +EGI+ +++ +++IA R++G +RDA L+Q L Q R++ + +E+
Sbjct: 182 IIGHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + +S D V + NL +I ++G +A +TD+L
Sbjct: 242 GSISLGALDAYVAALISHDAVAALDNLNLIFDSG-------KNMARFVTDLL 286
>gi|300362311|ref|ZP_07058487.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus gasseri
JV-V03]
gi|300353302|gb|EFJ69174.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus gasseri
JV-V03]
Length = 602
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 164/286 (57%), Gaps = 1/286 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF +VGQ + L NA+ R K+ ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +C++ DRG +I E+ N + I D+ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECENCLAADRGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+I + +I +E I ++ AL++IA +DG +RD+ L+Q LS ++ ++ G
Sbjct: 183 LIARMTYILGQEKIGFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYDDALKITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV 692
+ EK+ +L L +T + + +++ G ++ +L ++
Sbjct: 243 YAAQEKIEQVLLDLLKGETSEAFEIVHNLLQDGASTKNILDELISL 288
>gi|418963619|ref|ZP_13515454.1| DNA polymerase III, subunit gamma and tau [Streptococcus anginosus
subsp. whileyi CCUG 39159]
gi|383342943|gb|EID21143.1| DNA polymerase III, subunit gamma and tau [Streptococcus anginosus
subsp. whileyi CCUG 39159]
Length = 554
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 108/344 (31%), Positives = 186/344 (54%), Gaps = 17/344 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQEVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKGGEPCNECYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
I+ ++WI +E I+ + +A+++IA R++G +RDA L+Q L Q +++ + +E+
Sbjct: 182 IVEHIEWILQQENIDFENEAVQIIARRAEGGMRDALSILDQALSLTQDNQLTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT- 704
G IS L + L+ DT +KNL VI ++G +A +TD+L D
Sbjct: 242 GSISLGALDAYVAAVLAHDTSVALKNLDVIFDSG-------KNMARFVTDLLHYFRDLLI 294
Query: 705 -----KDRHRRKFFRRQPLSKEE--MEKLRQALKTLSEAEKQLR 741
++ H + F + +E E + A K+L+E + L+
Sbjct: 295 VKTGGENTHTSESFLENLKTPQERLFELIEIATKSLAEIKNSLQ 338
>gi|229074083|ref|ZP_04207132.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock4-18]
gi|229094743|ref|ZP_04225751.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-29]
gi|229113697|ref|ZP_04243134.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock1-3]
gi|407707974|ref|YP_006831559.1| oligopeptide ABC transporter permease [Bacillus thuringiensis MC28]
gi|423376702|ref|ZP_17353986.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus BAG1O-2]
gi|423439797|ref|ZP_17416703.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG4X2-1]
gi|423450042|ref|ZP_17426921.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus BAG5O-1]
gi|423462869|ref|ZP_17439637.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus BAG6O-1]
gi|423532225|ref|ZP_17508643.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus HuB2-9]
gi|423542505|ref|ZP_17518895.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus HuB4-10]
gi|423548736|ref|ZP_17525094.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus HuB5-5]
gi|423621457|ref|ZP_17597235.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD148]
gi|228669763|gb|EEL25168.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock1-3]
gi|228688681|gb|EEL42551.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-29]
gi|228709046|gb|EEL61170.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock4-18]
gi|401127192|gb|EJQ34920.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus BAG5O-1]
gi|401168517|gb|EJQ75779.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus HuB4-10]
gi|401174334|gb|EJQ81544.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus HuB5-5]
gi|401263384|gb|EJR69511.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD148]
gi|401641125|gb|EJS58847.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus BAG1O-2]
gi|402421597|gb|EJV53847.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG4X2-1]
gi|402422866|gb|EJV55090.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus BAG6O-1]
gi|402465234|gb|EJV96917.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus HuB2-9]
gi|407385659|gb|AFU16160.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis MC28]
Length = 562
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 103/372 (27%), Positives = 201/372 (54%), Gaps = 13/372 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++++AL+++A ++G +RDA ++Q +S ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEEEALQIVARAAEGGMRDALSLIDQAISYSDDAVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+S + L +L++ D ++ + +M G +P+ M D+L +
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 707 RHRRKF-----FRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759
+ FR + EEM E + + + +LS+ +++++ +N +L ++QL
Sbjct: 303 HMLERVIVDDQFR---MLSEEMQPEVIYEIIHSLSKGQQEMKWTNHPRIFLEVVMVQLC- 358
Query: 760 DQQYVLPSSSAD 771
QQ+++ ++ AD
Sbjct: 359 -QQFMMQANGAD 369
>gi|229142828|ref|ZP_04271272.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST24]
gi|228640642|gb|EEK97028.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST24]
Length = 562
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 198/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEGEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S + L +L++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R+ QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRKLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ D
Sbjct: 357 LC--QQFMMQANGTD 369
>gi|218895159|ref|YP_002443570.1| DNA polymerase III subunits gamma/tau [Bacillus cereus G9842]
gi|228898776|ref|ZP_04063060.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis IBL
4222]
gi|228963120|ref|ZP_04124291.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar sotto str. T04001]
gi|402562885|ref|YP_006605609.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
HD-771]
gi|423364755|ref|ZP_17342220.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD022]
gi|423566723|ref|ZP_17542994.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus MSX-A1]
gi|434378666|ref|YP_006613310.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
HD-789]
gi|218541669|gb|ACK94063.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus G9842]
gi|228796576|gb|EEM44013.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228860868|gb|EEN05244.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis IBL
4222]
gi|401072569|gb|EJP81039.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD022]
gi|401189216|gb|EJQ96272.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus MSX-A1]
gi|401791537|gb|AFQ17576.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
HD-771]
gi|401877223|gb|AFQ29390.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
HD-789]
Length = 562
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 198/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S + L +L++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R+ QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRKLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ D
Sbjct: 357 LC--QQFMMQANGTD 369
>gi|30018295|ref|NP_829926.1| DNA polymerase III subunits gamma and tau [Bacillus cereus ATCC
14579]
gi|229125539|ref|ZP_04254573.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-Cer4]
gi|29893835|gb|AAP07127.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 14579]
gi|228657923|gb|EEL13727.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-Cer4]
Length = 562
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 198/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEGEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S + L +L++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R+ QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRKLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ D
Sbjct: 357 LC--QQFMMQANGTD 369
>gi|218233931|ref|YP_002364873.1| DNA polymerase III subunits gamma and tau [Bacillus cereus B4264]
gi|228956463|ref|ZP_04118261.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229039927|ref|ZP_04189693.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH676]
gi|229107708|ref|ZP_04237346.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock1-15]
gi|229148431|ref|ZP_04276689.1| DNA polymerase III subunit gamma/tau [Bacillus cereus m1550]
gi|423632821|ref|ZP_17608566.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD154]
gi|423644664|ref|ZP_17620281.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD166]
gi|423651344|ref|ZP_17626914.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD169]
gi|423658418|ref|ZP_17633717.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD200]
gi|218161888|gb|ACK61880.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus B4264]
gi|228635040|gb|EEK91611.1| DNA polymerase III subunit gamma/tau [Bacillus cereus m1550]
gi|228675748|gb|EEL30954.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock1-15]
gi|228727417|gb|EEL78608.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH676]
gi|228803220|gb|EEM50040.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|401258934|gb|EJR65113.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD154]
gi|401269889|gb|EJR75915.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD166]
gi|401278463|gb|EJR84395.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD169]
gi|401287837|gb|EJR93605.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD200]
Length = 562
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 198/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEGEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S + L +L++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R+ QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRKLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ D
Sbjct: 357 LC--QQFMMQANGTD 369
>gi|157150866|ref|YP_001450197.1| DNA polymerase III subunits gamma and tau [Streptococcus gordonii
str. Challis substr. CH1]
gi|262282525|ref|ZP_06060293.1| DNA-directed DNA polymerase III [Streptococcus sp. 2_1_36FAA]
gi|157075660|gb|ABV10343.1| DNA-directed DNA polymerase III [Streptococcus gordonii str.
Challis substr. CH1]
gi|262261816|gb|EEY80514.1| DNA-directed DNA polymerase III [Streptococcus sp. 2_1_36FAA]
Length = 556
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 167/292 (57%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKDGEPCNDCYICKAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSMAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTKNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
II ++WI +EGI+ +++ +++IA R++G +RDA L+Q L Q R++ + +E+
Sbjct: 182 IIAHIEWILDQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + ++ D V + NL +I ++G +A +TD+L
Sbjct: 242 GSISLGALDAYVAALIAHDAVAALDNLNLIFDSG-------KNMARFVTDLL 286
>gi|229015425|ref|ZP_04172428.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1273]
gi|229021630|ref|ZP_04178218.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1272]
gi|423388207|ref|ZP_17365433.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG1X1-3]
gi|228739676|gb|EEL90084.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1272]
gi|228745867|gb|EEL95866.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1273]
gi|401643625|gb|EJS61320.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG1X1-3]
Length = 562
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 197/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV YVF GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFGDVVGQKHVTKTLQNALLQEKVSHAYVFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTSEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S + L +L++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRALSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ D
Sbjct: 357 LC--QQFMMQANGTD 369
>gi|423671054|ref|ZP_17646083.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VDM034]
gi|401294177|gb|EJR99807.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VDM034]
Length = 562
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 195/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ K Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVGYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTSEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S L DL++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQRYLGDLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRTLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ AD
Sbjct: 357 LC--QQFMMQANGAD 369
>gi|423589322|ref|ZP_17565408.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD045]
gi|401224330|gb|EJR30886.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD045]
Length = 562
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 198/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEGEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S + L +L++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R+ QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRKLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ D
Sbjct: 357 LC--QQFMMQANGTD 369
>gi|392940072|ref|ZP_10305716.1| LOW QUALITY PROTEIN: DNA polymerase III, subunit gamma/tau
[Thermoanaerobacter siderophilus SR4]
gi|392291822|gb|EIW00266.1| LOW QUALITY PROTEIN: DNA polymerase III, subunit gamma/tau
[Thermoanaerobacter siderophilus SR4]
Length = 542
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/370 (30%), Positives = 200/370 (54%), Gaps = 9/370 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q+L +KY PR+F+++VGQ + + L N + +K+G Y+F G GTGKTS A+IFA+A+
Sbjct: 26 YQSLYRKYRPRSFKEVVGQEHIVRTLKNQIKLKKIGHAYLFTGTRGTGKTSVAKIFAKAV 85
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + + + ++ E+ N + +L ++++ S ++Y++
Sbjct: 86 NCLNNKDGEPCNSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYSPSLAKYKV 145
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ D LP I+SRCQ+F F K+
Sbjct: 146 YIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFKKIPTRL 205
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I L+ I I+I++ LK IA +GS+RDA LEQ + + I+ V E++G
Sbjct: 206 IAQNLEKICIDSNIKIEEKGLKTIALYGNGSMRDAISLLEQCASYKEGLITYEDVCEMLG 265
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+ +DE L LLD + D ++K L I+ G++ + L ++ D++ Y +
Sbjct: 266 VANDEMLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRDMVL--YKTGGE 323
Query: 707 RHRRKFFRRQPLSKEEMEK-----LRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA-PD 760
+ + KE ++ L AL+ + +K++R + LT L +L+L P+
Sbjct: 324 ELKEILYSDVETVKERVQNFGTAFLTNALEKFTNLQKEVRYAISPLTLLEVTILRLIKPE 383
Query: 761 QQYVLPSSSA 770
Y + S A
Sbjct: 384 ISYDMMSLLA 393
>gi|238853617|ref|ZP_04643986.1| DNA polymerase III subunit gamma/tau [Lactobacillus gasseri 202-4]
gi|238833761|gb|EEQ26029.1| DNA polymerase III subunit gamma/tau [Lactobacillus gasseri 202-4]
Length = 602
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 187/354 (52%), Gaps = 8/354 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF +VGQ + L NA+ R K+ ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +C++ D+G +I E+ N + I D+ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECENCLAADKGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+I + +I +E I+ ++ AL++IA +DG +RD+ L+Q LS ++ ++ G
Sbjct: 183 LIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYEDALKITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+ EK+ +L L T + + +++ G ++ +L ++ + K
Sbjct: 243 YAAQEKIEQVLLDLLKGQTSEAFEIVHNLLQDGASTKNILDELISLTVKGML----VVKS 298
Query: 707 RHRRKFFRRQ---PLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
F + L+K EK ++ + A LR +N + L ++Q+
Sbjct: 299 NKEATFLTKDYATELAKIPEEKFYNLVQAANTALNDLRYTNQQQIPLDVFVVQV 352
>gi|423070255|ref|ZP_17059031.1| hypothetical protein HMPREF9177_00348 [Streptococcus intermedius
F0413]
gi|355366576|gb|EHG14294.1| hypothetical protein HMPREF9177_00348 [Streptococcus intermedius
F0413]
Length = 554
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 199/374 (53%), Gaps = 26/374 (6%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQKVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPHQKNGEPCNECYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
I+ ++WI +E I + DA+++IA R++G +RDA L+Q L Q +++ + +E+
Sbjct: 182 IVAHVEWILQQENIGFENDAVQVIARRAEGGMRDALSILDQALSLTQDNQLTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT- 704
G IS L + L DT ++NL VI ++G +A +TD+L D
Sbjct: 242 GSISLGALDAYVTAVLMHDTSAALENLDVIFDSG-------KNMARFVTDLLQYLRDLLI 294
Query: 705 -----KDRHRRKFFRRQPLSKEE--MEKLRQALKTLSEAEKQL--RMSNDKLTWLTAALL 755
++ H + F + +E E + A K+LSE + L ++ + +T +
Sbjct: 295 VKTGGENTHISEIFLANLNTPQERLFELIEIATKSLSEIKNSLQPKIYTEMMT------I 348
Query: 756 QLAPDQQYV-LPSS 768
+LA +Q+ V LPS+
Sbjct: 349 RLAEEQEKVELPSN 362
>gi|228918973|ref|ZP_04082354.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228840688|gb|EEM85948.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 562
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 198/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S + L +L++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALQLIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R+ QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRKLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ D
Sbjct: 357 LC--QQFMMQANGTD 369
>gi|339641467|ref|ZP_08662911.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. oral
taxon 056 str. F0418]
gi|339454736|gb|EGP67351.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. oral
taxon 056 str. F0418]
Length = 556
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 168/293 (57%), Gaps = 11/293 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYATSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
II ++WI +EGI+ +++ +++IA R++G +RDA L+Q L Q R++ + +E+
Sbjct: 182 IIGHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTEIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSA-DTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D+ AL A D V + NL +I ++G +A +TD+L
Sbjct: 242 GSISLGAL-DIYVAALIAHDAVTALDNLNLIFDSG-------KNMARFVTDLL 286
>gi|125717830|ref|YP_001034963.1| DNA polymerase III subunits gamma and tau [Streptococcus sanguinis
SK36]
gi|422846493|ref|ZP_16893176.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK72]
gi|125497747|gb|ABN44413.1| DNA-directed DNA polymerase III chain, putative [Streptococcus
sanguinis SK36]
gi|325687936|gb|EGD29956.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK72]
Length = 556
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 166/292 (56%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
II ++WI +EGI+ +++ +++IA R++G +RDA L+Q L Q R++ + +E+
Sbjct: 182 IIGHIEWILDQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + ++ D V + NL +I ++G +A +TD+L
Sbjct: 242 GSISLGALDAYVAALIAHDAVTALDNLNLIFDSG-------KNMARFVTDLL 286
>gi|229053869|ref|ZP_04195306.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH603]
gi|229131030|ref|ZP_04259945.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST196]
gi|423370804|ref|ZP_17348206.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD142]
gi|423513043|ref|ZP_17489573.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus HuA2-1]
gi|423520163|ref|ZP_17496644.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus HuA2-4]
gi|423526432|ref|ZP_17502880.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus HuA4-10]
gi|423672723|ref|ZP_17647662.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VDM062]
gi|228652425|gb|EEL08347.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST196]
gi|228721479|gb|EEL72996.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH603]
gi|401073261|gb|EJP81692.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD142]
gi|401156453|gb|EJQ63859.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus HuA2-4]
gi|401163254|gb|EJQ70602.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus HuA4-10]
gi|401311386|gb|EJS16690.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VDM062]
gi|402446324|gb|EJV78185.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus HuA2-1]
Length = 562
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 195/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ K Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVGYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTSEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S L DL++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQRYLGDLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRTLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ AD
Sbjct: 357 LC--QQFMMQANGAD 369
>gi|420147664|ref|ZP_14654939.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus gasseri
CECT 5714]
gi|398400811|gb|EJN54342.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus gasseri
CECT 5714]
Length = 602
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 164/286 (57%), Gaps = 1/286 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF +VGQ + L NA+ R K+ ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +C++ D+G +I E+ N + I D+ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECENCLAADKGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+I + +I +E I+ ++ AL++IA +DG +RD+ L+Q LS ++ ++ G
Sbjct: 183 LIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYDDALKITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV 692
+ EK+ +L L T + + +++ G ++ +L ++
Sbjct: 243 YAAQEKIEQVLLDLLKGQTSEAFEIVHNLLQDGASTKNILDELISL 288
>gi|229165012|ref|ZP_04292810.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH621]
gi|228618464|gb|EEK75491.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH621]
Length = 562
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 195/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ K Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVGYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTSEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S L DL++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQRYLGDLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRTLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ AD
Sbjct: 357 LC--QQFMMQANGAD 369
>gi|116629039|ref|YP_814211.1| DNA polymerase III, gamma/tau subunit [Lactobacillus gasseri ATCC
33323]
gi|116094621|gb|ABJ59773.1| DNA polymerase III, gamma/tau subunit [Lactobacillus gasseri ATCC
33323]
Length = 602
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 164/286 (57%), Gaps = 1/286 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF +VGQ + L NA+ R K+ ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +C++ D+G +I E+ N + I D+ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECENCLAADKGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+I + +I +E I+ ++ AL++IA +DG +RD+ L+Q LS ++ ++ G
Sbjct: 183 LIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYDDALKITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV 692
+ EK+ +L L T + + +++ G ++ +L ++
Sbjct: 243 YAAQEKIEQVLLDLLKGQTSEAFEIVHNLLQDGASTKNILDELISL 288
>gi|228905819|ref|ZP_04069718.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis IBL
200]
gi|228853827|gb|EEM98585.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis IBL
200]
Length = 562
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 197/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG ++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTRVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S + L +L++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R+ QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRKLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ D
Sbjct: 357 LC--QQFMMQTNGTD 369
>gi|401682895|ref|ZP_10814784.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. AS14]
gi|400183577|gb|EJO17828.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. AS14]
Length = 556
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 166/292 (56%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
II ++WI +EGI+ +++ +++IA R++G +RDA L+Q L Q R++ + +E+
Sbjct: 182 IIGHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + ++ D V + NL +I ++G +A +TD+L
Sbjct: 242 GSISLGALDTYVAALIAHDAVAALDNLNLIFDSG-------KNMARFVTDLL 286
>gi|227891208|ref|ZP_04009013.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius ATCC
11741]
gi|227867082|gb|EEJ74503.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius ATCC
11741]
Length = 585
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/376 (30%), Positives = 198/376 (52%), Gaps = 34/376 (9%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F DLVGQ +V + L NA++ + Y+F GP GTGKTS A+IFA+A+
Sbjct: 9 YQALYRVWRPQRFMDLVGQEMVTKTLKNAIITHQTSHAYLFTGPRGTGKTSAAKIFAKAI 68
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ ++ +PC C +C + G+ ++ E+ N E I D+ D + + + Y++
Sbjct: 69 NCRFSKEGEPCNECETCKAITEGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTEADYKV 128
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ +P IISR Q+F F ++
Sbjct: 129 YIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRTQRFDFKRITAES 188
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRIS-----VPLVQ 642
I+ + +I ++ ++ D ALK+IA ++G +RDA LSLL Q IS V L
Sbjct: 189 ILQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDA------LSLLDQVISFGDNNVTLDN 242
Query: 643 ELV--GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA-- 698
L+ G ++ E L + L LS DT N +K ++ I+E G + L+ L D+L
Sbjct: 243 ALLVTGSVTQESLFNYLKFVLSKDTTNALKKIQQIVEQGKDANRLIEDLINYCRDLLLYQ 302
Query: 699 --------GSYDFTKDRHRRKFFRRQPLSKE-EMEKLRQALKTLSEAEKQLRMSNDK--- 746
G D+ + LS++ + +L Q + L++ ++ +R S+ +
Sbjct: 303 QAPEMVSDGELGLLDDKFKE-------LSQQINVTQLYQIIDELNKQQENMRFSSHQSIY 355
Query: 747 LTWLTAALLQLAPDQQ 762
L LT L QL+ + +
Sbjct: 356 LEVLTVKLTQLSTNSE 371
>gi|423597185|ref|ZP_17573187.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD048]
gi|401217182|gb|EJR23878.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD048]
Length = 562
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 195/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ K Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVGYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTSEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S L DL++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQRYLGDLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRTLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ AD
Sbjct: 357 LC--QQFMMQANGAD 369
>gi|20806577|ref|NP_621748.1| DNA polymerase III subunit gamma and tau [Thermoanaerobacter
tengcongensis MB4]
gi|20515019|gb|AAM23352.1| DNA polymerase III, gamma/tau subunits [Thermoanaerobacter
tengcongensis MB4]
Length = 518
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/370 (28%), Positives = 202/370 (54%), Gaps = 9/370 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q+L +KY P++F ++VGQ+ + + L N + ++G Y+F G GTGKTS A+IFA+A+
Sbjct: 2 YQSLYRKYRPKSFSEVVGQDHIVRTLRNQIKMGRIGHAYLFTGTRGTGKTSVAKIFAKAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + + G + ++ E+ N + +L ++++ S ++Y++
Sbjct: 62 NCLNPKDGEPCNSCEVCQAINTGTTMDVLEIDAASNNSVNDVRELRESVIYSPSLTKYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ PR V+FIL ++ + LP I+SRCQ+F F K+
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPRHVIFILATTEPEKLPDTILSRCQRFDFKKIPTKQ 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I L+ I GI+I+++ ++ IA +GS+RDA LEQ + + I+ V E++G
Sbjct: 182 IAQNLERICQDSGIQIEQNGIRAIALYGNGSMRDAISLLEQCASYKEGLITYEDVCEILG 241
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+ ++E L LLD D V +++ L I+ G++ + ++ D++ Y D
Sbjct: 242 VANEEMLFSLLDHIYEKDAVASLQQLDKILSYGIDLGNFLRSFTYMLRDMVI--YKTGGD 299
Query: 707 RHRRKFFRRQPLSKEEMEK-----LRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA-PD 760
+ Q K + +K L AL+ + ++++R + +T L +L+L P+
Sbjct: 300 ELIEILYGDQETIKAKSQKYSIGFLTNALEKFTALQREIRYAVSPVTLLELTILRLIRPE 359
Query: 761 QQYVLPSSSA 770
Y + S A
Sbjct: 360 ISYDMGSLIA 369
>gi|422821399|ref|ZP_16869592.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK353]
gi|324990827|gb|EGC22762.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK353]
Length = 556
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 166/292 (56%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
II ++WI +EGI+ +++ +++IA R++G +RDA L+Q L Q R++ + +E+
Sbjct: 182 IIGHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + ++ D V + NL +I ++G +A +TD+L
Sbjct: 242 GSISLGALDAYVAALIAHDAVAALDNLNLIFDSG-------KNMARFVTDLL 286
>gi|422865654|ref|ZP_16912279.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1058]
gi|422871080|ref|ZP_16917573.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1087]
gi|327489199|gb|EGF20992.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1058]
gi|328946036|gb|EGG40182.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1087]
Length = 556
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 165/292 (56%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
II ++WI +EGI +++ +++IA R++G +RDA L+Q L Q R++ + +E+
Sbjct: 182 IIGHIEWILEQEGINFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTYIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + +S D V + NL +I ++G +A +TD+L
Sbjct: 242 GSISLGALDAYVAALISHDAVAALDNLNLIFDSG-------KNMARFVTDLL 286
>gi|295702260|ref|YP_003595335.1| DNA polymerase III subunits gamma and tau [Bacillus megaterium DSM
319]
gi|294799919|gb|ADF36985.1| DNA polymerase III, subunits gamma and tau [Bacillus megaterium DSM
319]
Length = 562
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/392 (26%), Positives = 204/392 (52%), Gaps = 12/392 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + Y P++F D+VGQ + + L NA+++ K Y+F GP GTGKT+ A+I A+A+
Sbjct: 3 YQALYRVYRPQSFNDVVGQQHIIKTLQNALVQEKFSHAYLFSGPRGTGKTTAAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEKAPIAEPCNECATCRGITDGSISDVIEIDAASNNGVDEIRDIRDKVKYAPSAVRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F ++ D
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPAHVIFILATTEPHKIPLTIISRCQRFDFKRISPED 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+Y ++ + E +E+ +DAL IA S+G +RDA L+Q +S +++S+ V + G
Sbjct: 183 IVYRMKEVLGSEELEVSEDALYEIAKASEGGMRDALSLLDQAISYSTEKVSLEDVLSITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL------AGS 700
+S +V ++ + + V + ++ +++ G +P + L D+L +
Sbjct: 243 AVSQSFIVKIVQAIFNKNIVEALDSVESLIKNGKDPARFVEDLIFYYRDVLLYQASEENA 302
Query: 701 YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA-- 758
Y K +F ++ SK + + + + L++ +++++ SN L AL++LA
Sbjct: 303 YLLEKAAVNEEF--KELSSKMDSAFIYKVIAELNQTQQEMKWSNHPRVLLEVALVKLAQS 360
Query: 759 -PDQQYVLPSSSADTSFSHSPLDLENAGGRGM 789
+Q+ LP + +L+ +G+
Sbjct: 361 STNQESALPYQDILQKMNQMEAELQQLKEKGI 392
>gi|229100809|ref|ZP_04231627.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-28]
gi|228682616|gb|EEL36675.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-28]
Length = 562
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/372 (27%), Positives = 200/372 (53%), Gaps = 13/372 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++++AL+++A ++G +RDA ++Q +S ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEEEALQIVARAAEGGMRDALSLIDQAISYSDDAVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+S + L +L++ D ++ + +M G +P+ M D+L +
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 707 RHRRKF-----FRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759
+ FR + EEM E + + + +LS+ +++++ +N +L ++QL
Sbjct: 303 HMLERVIVDDQFR---MLSEEMQPEVIYEIIHSLSKGQQEMKWTNHPRIFLEVVMVQLC- 358
Query: 760 DQQYVLPSSSAD 771
QQ+++ + AD
Sbjct: 359 -QQFMMQVNGAD 369
>gi|423471671|ref|ZP_17448415.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus BAG6O-2]
gi|402431162|gb|EJV63233.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus BAG6O-2]
Length = 562
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/369 (27%), Positives = 195/369 (52%), Gaps = 7/369 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ K Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVGYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEAEALQIVARAAEGGMRDALSLIDQAISYSDETVTSEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+S L DL++ D ++ + +M G +P+ M D+L +
Sbjct: 243 SVSQRYLGDLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 707 RHRRKFFRRQPLSK--EEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
+ EEM E + + + TLS+ +++++ +N +L ++QL QQ
Sbjct: 303 HMLERVIVDDQFCTLSEEMQPEGIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC--QQ 360
Query: 763 YVLPSSSAD 771
+++ ++ AD
Sbjct: 361 FMMQANGAD 369
>gi|379727835|ref|YP_005320020.1| DNA polymerase III subunits gamma and tau [Melissococcus plutonius
DAT561]
gi|376318738|dbj|BAL62525.1| DNA polymerase III subunits gamma and tau [Melissococcus plutonius
DAT561]
Length = 585
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 192/356 (53%), Gaps = 6/356 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ + Q L NA+ ++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFDDIVGQKAITQTLKNAIAQKKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C+ C++ G ++ E+ N E I D+ D + + S Y++
Sbjct: 63 NCKHSDDGEPCNICDVCLAITSGSLNDVIEIDAASNNGVEEIRDIRDKVKYAPTSSDYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPPNVVFILATTEPHKIPATIISRTQRFDFRRINVHD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I++ L +I + IE ++ AL +A ++G +RDA L+Q +S ++++V + + G
Sbjct: 183 IVHHLAFILKETSIEYEEQALYTVAQTAEGGMRDALSILDQIISFNNKKVTVEDARRITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++DE + ++ LS + +++L + G E L+ L D+L A +
Sbjct: 243 SLTDEMMDQYIEYCLSGEAEKALESLEGMFSAGKEANRLVENLLLYCRDLLMYQQAPTLL 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
K + + F +Q + EK+ ++ LS+ + +R +N+ +L A ++LA
Sbjct: 303 TEKVGNLTETF-KQLAQETSAEKIYTFIQILSDTQNDIRFTNNTAIYLEVATVKLA 357
>gi|90962203|ref|YP_536119.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius
UCC118]
gi|90821397|gb|ABE00036.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius
UCC118]
Length = 579
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/376 (30%), Positives = 198/376 (52%), Gaps = 34/376 (9%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F DLVGQ +V + L NA++ + Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRPQRFMDLVGQEMVTKTLKNAIITHQTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ ++ +PC C +C + G+ ++ E+ N E I D+ D + + + Y++
Sbjct: 63 NCRFSKEGEPCNECETCKAITEGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTEADYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ +P IISR Q+F F ++
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRTQRFDFKRITAES 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRIS-----VPLVQ 642
I+ + +I ++ ++ D ALK+IA ++G +RDA LSLL Q IS V L
Sbjct: 183 ILQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDA------LSLLDQVISFGDNNVTLDN 236
Query: 643 ELV--GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA-- 698
L+ G ++ E L + L LS DT N +K ++ I+E G + L+ L D+L
Sbjct: 237 ALLVTGSVTQESLFNYLKFVLSKDTTNALKEIQQIVEQGKDANRLIEDLINYCRDLLLYQ 296
Query: 699 --------GSYDFTKDRHRRKFFRRQPLSKE-EMEKLRQALKTLSEAEKQLRMSNDK--- 746
G D+ + LS++ + +L Q + L++ ++ +R S+ +
Sbjct: 297 QAPEMVSDGELGLLDDKFKE-------LSQQINVTQLYQIIDELNKQQENMRFSSHQSIY 349
Query: 747 LTWLTAALLQLAPDQQ 762
L LT L QL+ + +
Sbjct: 350 LEVLTVKLTQLSTNSE 365
>gi|424787879|ref|ZP_18214643.1| DNA polymerase III, subunit gamma and tau [Streptococcus
intermedius BA1]
gi|422113633|gb|EKU17371.1| DNA polymerase III, subunit gamma and tau [Streptococcus
intermedius BA1]
Length = 554
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 199/374 (53%), Gaps = 26/374 (6%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQKVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPHQKNGEPCNECYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
I+ ++WI +E I + DA+++IA R++G +RDA L+Q L Q +++ + +E+
Sbjct: 182 IVAHVEWILQQENIGFENDAVQIIARRAEGGMRDALSILDQALSLTQDNQLTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT- 704
G IS L + L DT ++NL VI ++G +A +TD+L D
Sbjct: 242 GSISLGALDAYVTAVLMHDTSAALENLDVIFDSG-------KNMARFVTDLLQYLRDLLI 294
Query: 705 -----KDRHRRKFFRRQPLSKEE--MEKLRQALKTLSEAEKQL--RMSNDKLTWLTAALL 755
++ H + F + +E E + A K+LSE + L ++ + +T +
Sbjct: 295 VKTGGENPHISEIFLANLNTPQERLFELIEIATKSLSEIKNSLQPKIYTEMMT------I 348
Query: 756 QLAPDQQYV-LPSS 768
+LA +Q+ V LPS+
Sbjct: 349 RLAEEQEKVELPSN 362
>gi|422884345|ref|ZP_16930794.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK49]
gi|332360360|gb|EGJ38172.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK49]
Length = 556
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 166/292 (56%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKDGEPCNDCYICKAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
II ++WI +EGI+ +++ +++IA R++G +RDA L+Q L Q R++ + +E+
Sbjct: 182 IIGHIEWILDQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + ++ D V + NL +I ++G +A +TD+L
Sbjct: 242 GSISLGALDAYVAALIAHDAVAALDNLNLIFDSG-------KNMARFVTDLL 286
>gi|404329053|ref|ZP_10969501.1| DNA polymerase III subunits gamma and tau [Sporolactobacillus
vineae DSM 21990 = SL153]
Length = 565
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 194/357 (54%), Gaps = 9/357 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + Y P+TF DL GQ + Q L NA++R++ Y+F GP GTGKTS A+I A+A+
Sbjct: 3 YQALYRVYRPQTFHDLAGQQRITQTLQNALVRQQFSHAYLFTGPRGTGKTSAAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C++C G+ ++ E+ N + I ++ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNQCSACRGITEGRIADVIEIDAASNNGVDEIREIRDKVKYAPSEVRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ +P IISRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPEHVVFILATTEPQKIPLTIISRCQQFDFRRIPASA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I L++++ + ++ + +AL+LIA S+G +RDA L+Q + G +++V V ++ G
Sbjct: 183 IADRLKFVSDDQHLKAEDEALQLIARASEGGMRDALSVLDQTAAYGDGKVTVQDVLDVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++SD +V L + + D ++ +++ G + L L+ QL D+L Y + D
Sbjct: 243 MVSDRLIVALTESLEARDAAAAIEKTAELLDQGKDSLRLIEQLIFYYRDLLL--YQTSPD 300
Query: 707 ------RHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
R R R K E+L Q + L++A +++ ++ +L +++L
Sbjct: 301 LEDILSRPRTDPAFRDQAEKIPAERLYQVIHQLNDALLEMKRTSHPRIFLEMVMVKL 357
>gi|332686114|ref|YP_004455888.1| DNA polymerase III subunits gamma and tau [Melissococcus plutonius
ATCC 35311]
gi|332370123|dbj|BAK21079.1| DNA polymerase III subunits gamma and tau [Melissococcus plutonius
ATCC 35311]
Length = 585
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 192/356 (53%), Gaps = 6/356 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ + Q L NA+ ++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFDDIVGQKAITQTLKNAIAQKKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C+ C++ G ++ E+ N E I D+ D + + S Y++
Sbjct: 63 NCKHNDDGEPCNICDVCLAITSGSLNDVIEIDAASNNGVEEIRDIRDKVKYAPTSSDYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPPNVVFILATTEPHKIPATIISRTQRFDFRRINVHD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I++ L +I + IE ++ AL +A ++G +RDA L+Q +S ++++V + + G
Sbjct: 183 IVHHLAFILKETSIEYEEQALYTVAQTAEGGMRDALSILDQIISFNNKKVTVEDARRITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++DE + ++ LS + +++L + G E L+ L D+L A +
Sbjct: 243 SLTDEMMDQYIEYCLSGEAEKALESLEGMFSAGKEANRLVENLLLYCRDLLMYQQAPTLL 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
K + + F +Q + EK+ ++ LS+ + +R +N+ +L A ++LA
Sbjct: 303 TEKVGNLTETF-KQLAQETSAEKIYTFIQILSDTQNDIRFTNNTAIYLEVATVKLA 357
>gi|87301610|ref|ZP_01084450.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 5701]
gi|87283827|gb|EAQ75781.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 5701]
Length = 607
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 120/346 (34%), Positives = 197/346 (56%), Gaps = 13/346 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L QKY P+ F LVGQ VA L++A+ + ++ Y+F GP GTGKTS ARI AR+L
Sbjct: 7 YLPLPQKYRPQRFDQLVGQEAVASTLTSALRQNRIAPAYLFSGPRGTGKTSSARILARSL 66
Query: 468 NCQSL--EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + P PCG C C S G + ++ E+ N ++I +L++ + +++
Sbjct: 67 NCLTAAGPTPDPCGSCELCRSITAGNALDVIEIDAASNTGVDNIRELIERSRFAPVQARW 126
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RVVF+L ++ + I+SRCQ+F F ++
Sbjct: 127 KVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIPL 186
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L++IAS+E I I +AL ++A R+ G LRDAE L+QLSLL I V +L+
Sbjct: 187 EALEGHLRFIASEEEIGITPEALHVVALRAQGGLRDAESLLDQLSLLSAPIEATAVWDLL 246
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD-ILAGSYDFT 704
G + +++L++L+ D V ++ R ++E G EP A++ LA+++ D +LAG
Sbjct: 247 GAVPEQELLELVAAMGEGDPVGILETCRRLLERGREPGAVLQGLASLLRDLVLAG---VA 303
Query: 705 KDRHRRKFF--RRQPLSKEEMEKLRQA-----LKTLSEAEKQLRMS 743
DR + QPL E+ ++ +A L +E+QLR S
Sbjct: 304 PDRLELTAVSTQLQPLLPEQARRIGKARLLSWQALLKGSEQQLRQS 349
>gi|57234625|ref|YP_181327.1| DNA polymerase III, gamma and tau subunits [Dehalococcoides
ethenogenes 195]
gi|57225073|gb|AAW40130.1| DNA polymerase III, gamma and tau subunits, putative
[Dehalococcoides ethenogenes 195]
Length = 559
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/354 (31%), Positives = 191/354 (53%), Gaps = 15/354 (4%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q +K+ P+T DLVGQ VA L NA+ ++ Y+F GP GTGKTS RI A+A+N
Sbjct: 4 QVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVN 63
Query: 469 CQSLE-QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
C + + + +PC C C+S G S ++ E+ N + I +L + + + + Y++
Sbjct: 64 CTTNQGKGEPCNTCPMCLSITEGSSMDVIEIDAASNTGVDDIRELKEKVQYAPALANYKV 123
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS + +A+ K ++ P RV+FIL ++ + + I+SRCQ+F F ++ +D
Sbjct: 124 YIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLSD 183
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVG 646
+ L+ I+ EGI I+ +ALKLIA + GS RD E L+Q+ + G IS+P VQ +G
Sbjct: 184 MSRKLEKISQAEGINIEPEALKLIARSAGGSFRDGENLLQQIATTYGTEISLPQVQAALG 243
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL------AGS 700
+ DE++ L + L D N ++ L ++ G++ +L + I+ GS
Sbjct: 244 ISGDERIKTLAENILKKDIKNGLQTLNAVVADGIDLKQFRRELLDYLRQIMLLNSGAEGS 303
Query: 701 YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAAL 754
+ T D ++ + ++ +E + +A+K S QL S+D + L+ L
Sbjct: 304 LELTAD-EKKALQKVSAITN--LEGITKAIKAFS----QLDFSSDTASSLSFEL 350
>gi|167038707|ref|YP_001661692.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter sp.
X514]
gi|300913734|ref|ZP_07131051.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp.
X561]
gi|307723250|ref|YP_003903001.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter sp.
X513]
gi|166852947|gb|ABY91356.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp.
X514]
gi|300890419|gb|EFK85564.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp.
X561]
gi|307580311|gb|ADN53710.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp.
X513]
Length = 518
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/363 (29%), Positives = 196/363 (53%), Gaps = 9/363 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q+L +KY P++F+++VGQ + + L N + K+G Y+F G GTGKTS A+IFA+A+
Sbjct: 2 YQSLYRKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAYLFTGTRGTGKTSVAKIFAKAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + + + ++ E+ N + +L ++++ + ++Y++
Sbjct: 62 NCLNNTDGEPCNSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQAKYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ D LP I+SRCQ+F F ++
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFKRIPTRL 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I L I + GI+I++ LK IA +GS+RDA LEQ + + I+ V E++G
Sbjct: 182 IAQNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKEGLITYEDVCEMLG 241
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+ +DE L LLD + D ++K L I+ G++ + L ++ D++ Y +
Sbjct: 242 VANDEVLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRDMVL--YKTGGE 299
Query: 707 RHRRKFFRRQPLSKEEMEK-----LRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA-PD 760
+ + KE ++ L AL+ + +K++R + LT L +L+L P+
Sbjct: 300 ELKEILYSDVETIKERVQNFGTAFLTNALEKFTNLQKEVRYAISPLTLLEVTILRLIKPE 359
Query: 761 QQY 763
Y
Sbjct: 360 ISY 362
>gi|294496893|ref|YP_003560593.1| DNA polymerase III subunits gamma and tau [Bacillus megaterium QM
B1551]
gi|294346830|gb|ADE67159.1| DNA polymerase III, subunits gamma and tau [Bacillus megaterium QM
B1551]
Length = 562
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/392 (26%), Positives = 204/392 (52%), Gaps = 12/392 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + Y P++F D+VGQ + + L NA+++ K Y+F GP GTGKT+ A+I A+A+
Sbjct: 3 YQALYRVYRPQSFNDVVGQQHIIKTLQNALVQEKFSHAYLFSGPRGTGKTTAAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEKAPIAEPCNECATCRGITDGSISDVIEIDAASNNGVDEIRDIRDKVKYAPSAVRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F ++ D
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPAHVIFILATTEPHKIPLTIISRCQRFDFKRISPED 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+Y ++ + E +E+ +DAL IA S+G +RDA L+Q +S +++S+ V + G
Sbjct: 183 IVYRMKEVLGSEELEVSEDALYEIAKASEGGMRDALSLLDQAISYSTEKVSLEDVLSITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL------AGS 700
+S +V ++ + + V + ++ +++ G +P + L D+L +
Sbjct: 243 AVSQAFIVKIVQAIFNENIVEALDSVESLIKNGKDPARFVEDLIFYYRDVLLYQASEENA 302
Query: 701 YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA-- 758
Y K +F ++ SK + + + + L++ +++++ SN L AL++LA
Sbjct: 303 YLLEKAAVNEEF--KELSSKMDSAFIYKVIAELNQTQQEMKWSNHPRVLLEVALVKLAQS 360
Query: 759 -PDQQYVLPSSSADTSFSHSPLDLENAGGRGM 789
+Q+ LP + +L+ +G+
Sbjct: 361 STNQEDTLPYQDILQKMNQMEAELQQLKEKGI 392
>gi|374385348|ref|ZP_09642855.1| DNA polymerase III, subunit gamma and tau [Odoribacter laneus YIT
12061]
gi|373225839|gb|EHP48167.1| DNA polymerase III, subunit gamma and tau [Odoribacter laneus YIT
12061]
Length = 369
Score = 181 bits (458), Expect = 3e-42, Method: Composition-based stats.
Identities = 106/353 (30%), Positives = 184/353 (52%), Gaps = 10/353 (2%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P +F +VGQ + L NA++ ++ Y+F GP G GKT+CARIFA+ +NCQ+L
Sbjct: 9 RKYRPASFDTVVGQLSITSTLRNAIVNHQLAQAYLFCGPRGVGKTTCARIFAKTINCQNL 68
Query: 473 E-QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
+ +PC C SC + + G+S NI E+ N + I L+D + +Y +++ D
Sbjct: 69 QPNAEPCNECESCKAFNTGRSLNIHELDAASNNSVDDIRGLVDQVRILPQVGKYSVYIID 128
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+ LS +++A K ++ P +FIL ++ + I+SRCQ + F +MK D +
Sbjct: 129 EVHMLSTSAFNAFLKTLEEPPAHAIFILATTEKHKILPTILSRCQIYDFNRMKVEDTVRH 188
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISD 650
LQ+IA KEG+ +++AL +IA ++DG++RDA +Q ++ G+ ++ V E + ++
Sbjct: 189 LQYIAQKEGVTAEEEALDIIAQKADGAMRDALSIFDQVVNFCGKNLTYAGVIENLNVLDY 248
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT------ 704
E L DL D + IME G + L++ L ++L T
Sbjct: 249 EYYFRLTDLFHKGDVSGALLLFNEIMEKGFDAANLVAGLGKHFRNVLVAKDPATVQLLEV 308
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
R R ++ ++ + E L ALK + + E Q ++ +K + L++L
Sbjct: 309 SARIRERYLKQAAVC--ETGFLYDALKIIEQCEMQYKVRMEKRLCVEITLIKL 359
>gi|422848841|ref|ZP_16895517.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK115]
gi|325689862|gb|EGD31866.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK115]
Length = 556
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 165/292 (56%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
II ++WI +EGI +++ +++IA R++G +RDA L+Q L Q R++ + +E+
Sbjct: 182 IIGHIEWILEQEGINFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + ++ D V + NL +I ++G +A +TD+L
Sbjct: 242 GSISLGALDAYVAALIAHDAVAALDNLNLIFDSG-------KNMARFVTDLL 286
>gi|421490848|ref|ZP_15938215.1| DNA polymerase III, subunit gamma and tau [Streptococcus anginosus
SK1138]
gi|400371845|gb|EJP24794.1| DNA polymerase III, subunit gamma and tau [Streptococcus anginosus
SK1138]
Length = 554
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 186/344 (54%), Gaps = 17/344 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQEVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKGGEPCNECYICKAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTRD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
I+ ++WI +E I+ + +A+++IA R++G +RDA L+Q L Q +++ + +E+
Sbjct: 182 IVEHIEWILQQENIDFENEAVQIIARRAEGGMRDALSILDQALSLTQDNQLTTVISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT- 704
G IS L + ++ DT ++NL VI ++G +A +TD+L D
Sbjct: 242 GSISLGALDAYVAAVVAHDTSAALENLDVIFDSG-------KNMARFVTDLLQYLRDLLI 294
Query: 705 -----KDRHRRKFFRRQPLSKEE--MEKLRQALKTLSEAEKQLR 741
K+ H + F + +E E + A K+L+E + L+
Sbjct: 295 VKTGGKNTHTSEIFLDNLKTPQERLFELIEIATKSLAEIKSSLQ 338
>gi|422876616|ref|ZP_16923086.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1056]
gi|332361424|gb|EGJ39228.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1056]
Length = 556
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 165/292 (56%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
II ++WI +EGI +++ +++IA R++G +RDA L+Q L Q R++ + +E+
Sbjct: 182 IIGHIEWILEQEGINFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + ++ D V + NL +I ++G +A +TD+L
Sbjct: 242 GSISLGALDAYVAALIAHDAVAALDNLNLIFDSG-------KNMARFVTDLL 286
>gi|323140458|ref|ZP_08075386.1| DNA polymerase III, subunit gamma and tau [Phascolarctobacterium
succinatutens YIT 12067]
gi|322415026|gb|EFY05817.1| DNA polymerase III, subunit gamma and tau [Phascolarctobacterium
succinatutens YIT 12067]
Length = 608
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 162/279 (58%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P+ F LVGQ V L NA+ K+ Y+F GP GTGKTS ARI A+ALNC+
Sbjct: 6 LYRQWRPQDFDALVGQKAVKTTLKNALASGKIAHAYLFSGPRGTGKTSMARILAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+PCG C +C +G S ++ E+ N ++I DL + + + S+Y++++
Sbjct: 66 QGPTAEPCGQCGNCQRIVQGTSLDVIEIDAASNTSVDNIRDLREQVAFTPAESRYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A+ K ++ P VFIL ++ +P I SRCQ+F F ++ +I
Sbjct: 126 DEVHMLSTGAFNALLKTLEEPPAHAVFILATTDPQKVPATIQSRCQRFEFRRVTVDEIAE 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
L +A+ GIE D DAL+LIA +++G +RDA L+Q ++G+R++V V+E++G++
Sbjct: 186 HLAMVAAGSGIEADADALRLIAIQAEGGMRDALSLLDQCGVMGKRVTVATVREVLGIVGR 245
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689
E L +L + + L +++E G + ++++L
Sbjct: 246 EALHELTEAIGRRQLPQALATLNLLLEQGKDVKQVLTEL 284
>gi|345016500|ref|YP_004818853.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344031843|gb|AEM77569.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 544
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 109/370 (29%), Positives = 199/370 (53%), Gaps = 9/370 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q+L +KY P++F+++VGQ + + L N + K+G Y+F G GTGKTS A+IFA+A+
Sbjct: 26 YQSLYRKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAYLFTGTRGTGKTSVAKIFAKAV 85
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + + + ++ E+ N + +L ++++ + ++Y++
Sbjct: 86 NCLKNTEGEPCNSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQAKYKV 145
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ D LP I+SRCQ+F F ++
Sbjct: 146 YIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFKRIPTRL 205
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I L I + GI+I++ LK IA +GS+RDA LEQ + + I+ V E++G
Sbjct: 206 IAQNLDRICNDSGIKIEEKGLKTIALYGNGSMRDAISLLEQCASYKEGLITYEDVCEMLG 265
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+ +DE L LLD + D ++K L I+ G++ + L ++ D++ Y +
Sbjct: 266 VANDEMLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRDMVL--YKTGGE 323
Query: 707 RHRRKFFRRQPLSKEEMEK-----LRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA-PD 760
+ + KE ++ L AL+ + +K++R + LT L +L+L P+
Sbjct: 324 ELKEILYSDVETVKERVQNFGTAFLTNALEKFTNLQKEVRYAISPLTLLEVTILRLIKPE 383
Query: 761 QQYVLPSSSA 770
Y + S A
Sbjct: 384 ISYDMMSLLA 393
>gi|228989232|ref|ZP_04149226.1| DNA polymerase III subunit gamma/tau [Bacillus pseudomycoides DSM
12442]
gi|228770507|gb|EEM19077.1| DNA polymerase III subunit gamma/tau [Bacillus pseudomycoides DSM
12442]
Length = 562
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 197/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ K Y+F GP GTGKT+ A++FA+ +
Sbjct: 3 YQALYRTWRPQNFEDVVGQKHVTKTLQNAILQEKASHAYLFSGPRGTGKTTIAKVFAKTI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPACLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPQHVIFILATTEPHKIPPTIISRCQRFEFRKISVHD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLATVVTNEGTKVEDEALQIVARAAEGGMRDALSLIDQAISYSDEVVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S + L +L++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQQYLGNLVECMRENDVSRALRIIDDMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRMLSEAMQP------EMIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ AD
Sbjct: 357 LC--QQFMVQTNGAD 369
>gi|422851789|ref|ZP_16898459.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK150]
gi|325694344|gb|EGD36257.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK150]
Length = 556
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 166/292 (56%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR--ISVPLVQELV 645
II ++WI +EGI+ +++ +++IA R++G +RDA L+Q L Q ++ + +E+
Sbjct: 182 IIGHIEWILEREGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENCLTTDIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + ++ DTV + NL +I ++G +A +TD+L
Sbjct: 242 GSISLGALDAYVAALIAHDTVAALDNLNLIFDSG-------KNMARFVTDLL 286
>gi|317504994|ref|ZP_07962942.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella salivae DSM
15606]
gi|315663876|gb|EFV03595.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella salivae DSM
15606]
Length = 599
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/355 (31%), Positives = 191/355 (53%), Gaps = 14/355 (3%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
KY P TF +VGQ+ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC++
Sbjct: 10 KYRPMTFDSVVGQHALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCENPS 69
Query: 474 QP-KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVF 530
Q + C C SC + + +S NI E+ N E+I L++ T PP +Y++F+
Sbjct: 70 QDGEACNVCESCKAFNEQRSYNIFELDAASNNSVENIKALMEQ--TRIPPQIGRYKVFII 127
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M + I
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVGNTIE 187
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+ +A+KEGI D +AL +IA ++DG +RDA +Q + Q I+ V E + ++
Sbjct: 188 HLKSVAAKEGITYDDEALAVIAEKADGGMRDALSIFDQAASFCQGNITYQKVIEDLNVLD 247
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDF------ 703
+ ++D ALS + + I+ G + L+S LA + ++L +
Sbjct: 248 SDYYFKIVDFALSNKVSEIMVLVNNILSKGFDGGNLISGLACHVRNVLMARDETTLPLLE 307
Query: 704 TKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
T ++ R+K+ + K ++ L QALK L++ + + S++K + L+Q+A
Sbjct: 308 TSEQQRKKYHEQA--KKCPVQYLYQALKLLNQCDINYKQSSNKRLLVEITLIQVA 360
>gi|417788579|ref|ZP_12436262.1| DNA polymerase III subunits gamma and tau [Lactobacillus salivarius
NIAS840]
gi|334308756|gb|EGL99742.1| DNA polymerase III subunits gamma and tau [Lactobacillus salivarius
NIAS840]
Length = 579
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 198/376 (52%), Gaps = 34/376 (9%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F DLVGQ +V + L NA++ + Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRPQRFMDLVGQEMVTKTLKNAIITHQTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ ++ +PC C +C + G+ ++ E+ N E I D+ D + + + Y++
Sbjct: 63 NCRFSKEGEPCNECETCKAITEGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTEADYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ +P IISR Q+F F ++
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRTQRFDFKRITAES 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRIS-----VPLVQ 642
I+ + +I ++ ++ D ALK+IA ++G +RDA LSLL Q IS V L
Sbjct: 183 ILQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDA------LSLLDQVISFGDNNVTLDN 236
Query: 643 ELV--GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA-- 698
L+ G ++ E L + L LS DT N +K ++ I+E G + L+ L D+L
Sbjct: 237 ALLVTGSVTQESLFNYLKFVLSKDTTNALKEIQQIVEQGKDANRLIEDLINYCRDLLLYQ 296
Query: 699 --------GSYDFTKDRHRRKFFRRQPLSKE-EMEKLRQALKTLSEAEKQLRMSNDK--- 746
G D+ + LS++ + ++ Q + L++ ++ +R S+ +
Sbjct: 297 QAPEMVSDGELGLLDDKFKE-------LSQQINVTQIYQIIDELNKQQENMRFSSHQSIY 349
Query: 747 LTWLTAALLQLAPDQQ 762
L LT L QL+ + +
Sbjct: 350 LEVLTVKLTQLSTNSE 365
>gi|428321082|ref|YP_007151164.1| DNA polymerase III subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
gi|428244751|gb|AFZ10536.1| DNA polymerase III, subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
Length = 514
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 171/309 (55%), Gaps = 2/309 (0%)
Query: 394 SGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHG 453
S QQ + N + + L QKY PR+ +L GQ + + LSNAV K+ Y+F G G
Sbjct: 33 SNSQQTITPNHSIMYAALPQKYRPRSLSELAGQEYIQRTLSNAVKTNKIAPAYLFAGERG 92
Query: 454 TGKTSCARIFARALNCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILD 511
TGKTS ARI A++LNC S ++P KPCG C SC S ++G S ++ E+ + +
Sbjct: 93 TGKTSTARILAKSLNCTSADKPTVKPCGKCQSCRSIEKGSSLDVAEIDAASHNGVDDARG 152
Query: 512 LLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHII 571
L++ + S+YR+F+ D+ LS +++A+ K ++ P VVFIL ++ + I
Sbjct: 153 LIERSHFAPAISRYRVFILDEVHCLSSQAFNALLKCLEEPPHHVVFILCTTEQHKVLPTI 212
Query: 572 ISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL 631
SRCQ F F + I+ L +A KE I I ++A IA ++G +RDA L+QLSL
Sbjct: 213 NSRCQTFLFRSLPIPAIVKQLTMVAQKESIAIAEEAKIAIARAANGGMRDALQLLDQLSL 272
Query: 632 LGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT 691
LG+ I+ V EL G I + L+ +L A + + + ++ R ++++G P L++ L
Sbjct: 273 LGEEITSSHVLELSGRIPESDLIAILKSARTGNALKLLQLSRELIDSGKSPKMLLASLLA 332
Query: 692 VITDILAGS 700
D+L +
Sbjct: 333 CYRDLLLAT 341
>gi|423416583|ref|ZP_17393672.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG3X2-1]
gi|401110131|gb|EJQ18044.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG3X2-1]
Length = 562
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 196/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV YVF GP GTGKT+ A++FA+ +
Sbjct: 3 YQALYRTWRPQKFGDVVGQKHVTKTLQNALLQEKVSHAYVFSGPRGTGKTTIAKVFAKTI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTSEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S + L +L++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRALSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ D
Sbjct: 357 LC--QQFMMQANGTD 369
>gi|374992794|ref|YP_004968293.1| DNA polymerase III subunits gamma and tau [Desulfosporosinus
orientis DSM 765]
gi|357211160|gb|AET65778.1| DNA polymerase III, subunit gamma/tau [Desulfosporosinus orientis
DSM 765]
Length = 556
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 165/290 (56%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P+ FRD+VGQ + + NA+ + KV Y+F GP GTGKTS A+I A+ALNC+
Sbjct: 6 LYREWRPKLFRDIVGQEHIKKTFLNALRQGKVAHAYLFSGPRGTGKTSTAKILAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ +PC FC SC+S D+G + + E+ N I DL DN+ S ++++++
Sbjct: 66 HRDDEEPCNFCPSCMSIDQGSAMEVFEIDAASNRGINEIRDLRDNIKLSSIEGKHKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P +VVFIL ++ + +P I+SR Q+F F ++ DI
Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPPQVVFILATTEVQKIPLTILSRVQRFEFHRISAEDIQQ 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
L + + E+ DAL +IA +S+G LRDA L+Q L + V V +++G++ +
Sbjct: 186 RLAEVCNSLQREVHSDALMVIAQKSEGGLRDALSILDQCLLQSDPVGVEEVYQVLGMVGE 245
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS 700
L+D +S D ++ L ++ G +P ++ +L + +L S
Sbjct: 246 TYSAQLVDKIISKDYAKSLGFLAEGIQQGRDPRQIIRELLEYLRQMLLAS 295
>gi|325294717|ref|YP_004281231.1| DNA polymerase III subunits gamma and tau [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065165|gb|ADY73172.1| DNA polymerase III, subunits gamma and tau [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 463
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/349 (29%), Positives = 186/349 (53%), Gaps = 19/349 (5%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
+ +KY P F ++ GQ + L NA+ + YVF GP G GKT+ ARI A+ALNC+
Sbjct: 6 IPRKYRPSKFSEVTGQEYITNTLKNAIKTGRFAHAYVFAGPRGVGKTTTARIVAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
SL +PC C++C + +G ++ E+ N + I +L +++ + + ++++
Sbjct: 66 SLIDGEPCNECSNCQAISKGSFPDVIEIDAATNRGIDQIRELRESVNYAPVKGKKKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P VVFIL ++ +D +P I+SRCQKF F ++ ++
Sbjct: 126 DEFHMLTKEAFNALLKTLEEPPEHVVFILATTEIDKIPPTILSRCQKFVFRRIPKDLMVE 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
TL+ I KE + +++AL LIA+ S+G +RDAE L+Q LG + + E +G+++
Sbjct: 186 TLKRICEKEDVSYEEEALYLIATASEGCMRDAESLLDQAIALGNGLVKTSYISEFLGVLT 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR 709
+++ ++L L+ S + L+ + G PL ++ QL ++
Sbjct: 246 GKEIFEILSLSFSGKKRELREKLKRLESQGYNPLFIVKQLL---------------EKVE 290
Query: 710 RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R+F + S+EE L A K LS+A K + T L L +L+
Sbjct: 291 REFIEGKNFSEEE---LLAAFKILSDAHKVVATHPYPYTALFFYLFKLS 336
>gi|298373537|ref|ZP_06983526.1| DNA polymerase III, gamma/tau subunit [Bacteroidetes oral taxon 274
str. F0058]
gi|298274589|gb|EFI16141.1| DNA polymerase III, gamma/tau subunit [Bacteroidetes oral taxon 274
str. F0058]
Length = 575
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 167/288 (57%), Gaps = 2/288 (0%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL- 472
KY P TFR ++GQN + L NA++ R + Y+F GP G GKT+CARIFA+ +NC ++
Sbjct: 10 KYRPATFRSVIGQNSLTTTLKNAIITRHLAHAYLFCGPRGVGKTTCARIFAKTINCSNIT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
E+ + C C SC+S + +S NI E+ N + I +L+ ++ +YR+++ D+
Sbjct: 70 EEGEACNQCESCVSFNENRSLNIFEMDAASNNSVDDIRELVKQVMVPPQIGRYRVYIIDE 129
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ P +FIL ++ + IISRCQ + F +++ D + L
Sbjct: 130 VHMLSTAAFNAFLKTLEEPPEYAIFILATTEKHKILPTIISRCQVYDFNRIQINDTVDYL 189
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVGLISDE 651
+++A E I+++ +AL+++A ++DG++RDA +Q+ S G +I+ V +++ ++ E
Sbjct: 190 KYVAQNEKIDVETEALEVMAQKADGAMRDALSIFDQIVSYCGNKITYKEVIDILNVLDYE 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAG 699
+ ++D + D V ++ L I+ G + + +S L++ D+L
Sbjct: 250 YYLQMVDCFVRGDVVGSLMILDKIINKGFDVQSFVSGLSSHFRDLLVA 297
>gi|423484471|ref|ZP_17461160.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG6X1-2]
gi|401138311|gb|EJQ45882.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG6X1-2]
Length = 562
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 195/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ K Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVGYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTSEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S L +L++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQRYLGNLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRTLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ AD
Sbjct: 357 LC--QQFMMQANGAD 369
>gi|384916622|ref|ZP_10016777.1| DNA polymerase III, gamma/tau subunit [Methylacidiphilum
fumariolicum SolV]
gi|384525946|emb|CCG92650.1| DNA polymerase III, gamma/tau subunit [Methylacidiphilum
fumariolicum SolV]
Length = 592
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 116/366 (31%), Positives = 200/366 (54%), Gaps = 25/366 (6%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q ++KY P+ F ++VGQ+ V + L NA+ ++V Y+F GP GTGKT+ ARI A++L
Sbjct: 2 YQVFSRKYRPKVFSEVVGQDHVVRTLKNAIRLQRVAHAYLFSGPRGTGKTTLARILAKSL 61
Query: 468 NCQSLEQPKPCGFCNS--CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + P N C+ D G+S + E+ N + + DL + T S+Y
Sbjct: 62 NCT--DGPNADFDPNDPICLDIDAGRSFDCIEIDGASNNGVDQVRDLREAAKTLPVQSRY 119
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+I++ D+ L+ +++A+ K+++ P+ V FI ++ +P +ISRCQ+F F ++
Sbjct: 120 KIYIIDEVHMLTQAAFNALLKILEEPPQHVKFIFATTEPHKIPTTVISRCQRFHFKRIPR 179
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQEL 644
I LQ I S E I+ D+ AL++IA S+G+LRDAE+ L+QL S G+RI + VQE+
Sbjct: 180 KLIADHLQKICSYEQIDADRKALEIIADISEGALRDAEVALDQLISFYGERIDLASVQEM 239
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT 704
G++ E L +L S ++ +K + +++E+G +P+ L + ++ ++ T
Sbjct: 240 FGIVGLEPLCGILRDIASGQSLEALKKVHMLLESGKDPILLAREFRNLLHNVALFKASIT 299
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLS--------EA----EKQLRMSNDKLTWLTA 752
+ + L EE++ +R+A K LS EA E +LR + K
Sbjct: 300 TLKGQ--------LDAEELDLIREASKHLSLPLVIDLLEAMDSWENKLRYALHKEVLFEI 351
Query: 753 ALLQLA 758
A+L+L+
Sbjct: 352 AILELS 357
>gi|417015746|ref|ZP_11946931.1| DNA polymerase III subunits gamma and tau [Lactobacillus helveticus
MTCC 5463]
gi|328462873|gb|EGF34722.1| DNA polymerase III subunits gamma and tau [Lactobacillus helveticus
MTCC 5463]
Length = 595
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 181/336 (53%), Gaps = 16/336 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF ++GQ + L NA+ R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDSVIGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +CI+ D+G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECANCIAADKGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKDD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ +++I +E I+ + AL +IA +DG +RDA L+Q LS +R++ E+ G
Sbjct: 183 LEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKERVNYQDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD----ILAG--- 699
+ E + +L L + + +K + + G ++ +L + T I AG
Sbjct: 243 FAAKENIEKILLALLEQNPESALKLAQTELTQGASSKNILDELIDMATKSLMLIKAGDDR 302
Query: 700 -----SYDF---TKDRHRRKFFRRQPLSKEEMEKLR 727
S DF KD + F+R L+ + + LR
Sbjct: 303 QGTFLSEDFVQKVKDIPTKIFYRLITLANKALNDLR 338
>gi|163938031|ref|YP_001642915.1| DNA polymerase III subunits gamma and tau [Bacillus
weihenstephanensis KBAB4]
gi|163860228|gb|ABY41287.1| DNA polymerase III, subunits gamma and tau [Bacillus
weihenstephanensis KBAB4]
Length = 562
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 194/375 (51%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ K Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVGYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTSEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S L DL++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQRYLGDLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRTLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ D
Sbjct: 357 LC--QQFMMQANGVD 369
>gi|229009533|ref|ZP_04166762.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides DSM 2048]
gi|423491073|ref|ZP_17467722.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus BtB2-4]
gi|423496378|ref|ZP_17473022.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus CER057]
gi|423496828|ref|ZP_17473445.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus CER074]
gi|423603235|ref|ZP_17579231.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD078]
gi|423666134|ref|ZP_17641234.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VDM022]
gi|228751744|gb|EEM01541.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides DSM 2048]
gi|401149182|gb|EJQ56659.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus CER057]
gi|401163904|gb|EJQ71247.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus CER074]
gi|401222265|gb|EJR28860.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD078]
gi|401286649|gb|EJR92466.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VDM022]
gi|402427109|gb|EJV59222.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus BtB2-4]
Length = 562
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 194/375 (51%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ K Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVGYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTSEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S L DL++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQRYLGDLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRTLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ D
Sbjct: 357 LC--QQFMMQANGVD 369
>gi|422855678|ref|ZP_16902336.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1]
gi|327461339|gb|EGF07670.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1]
Length = 556
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 165/292 (56%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIETQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
II ++WI +EGI +++ +++IA R++G +RDA L+Q L Q R++ + +E+
Sbjct: 182 IIGHIEWILEQEGINFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTYIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + +S D V + NL +I ++G +A +TD+L
Sbjct: 242 GSISLGALDAYVAALISHDAVAALDNLNLIFDSG-------KNMARFVTDLL 286
>gi|384049134|ref|YP_005497151.1| DNA polymerase III (Gamma and tau subunits) [Bacillus megaterium
WSH-002]
gi|345446825|gb|AEN91842.1| DNA polymerase III (Gamma and tau subunits) [Bacillus megaterium
WSH-002]
Length = 562
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/392 (26%), Positives = 204/392 (52%), Gaps = 12/392 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + Y P++F D+VGQ + + L NA+++ K Y+F GP GTGKT+ A+I A+A+
Sbjct: 3 YQALYRVYRPQSFNDVVGQQHIIKTLQNALVQEKFSHAYLFSGPRGTGKTTAAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEKAPIAEPCNECATCRGITDGSISDVIEIDAASNNGVDEIRDIRDKVKYAPSAVRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F ++ D
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPAHVIFILATTEPHKIPLTIISRCQRFDFKRISPED 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+Y ++ + E +E+ +DAL IA S+G +RDA L+Q +S +++S+ V + G
Sbjct: 183 IVYRMKEVLGSEELEVSEDALYEIAKASEGGMRDALSLLDQAISYSTEKVSLEDVLSITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL------AGS 700
+S +V ++ + + V + ++ +++ G +P + L D+L +
Sbjct: 243 AVSQAFIVKIVQAIFNENIVEALDSVESLIKNGKDPARFVEDLIFYYRDVLLYQASEENA 302
Query: 701 YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA-- 758
Y K +F ++ SK + + + + L++ +++++ SN L AL++LA
Sbjct: 303 YLLEKAAVNEEF--KELSSKMDSAFIYKVIAELNQTQQEMKWSNHPRVLLEVALVKLAQS 360
Query: 759 -PDQQYVLPSSSADTSFSHSPLDLENAGGRGM 789
+Q+ LP + +L+ +G+
Sbjct: 361 STNQESDLPYQDILQKMNQMEAELQQLKEKGI 392
>gi|385840750|ref|YP_005864074.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius CECT
5713]
gi|300214871|gb|ADJ79287.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius CECT
5713]
Length = 579
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 166/297 (55%), Gaps = 13/297 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F DLVGQ +V + L NA++ + Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRPQRFMDLVGQEMVTRTLKNAIITHQTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ ++ +PC C +C + G+ ++ E+ N E I D+ D + + + Y++
Sbjct: 63 NCRFSKEGEPCNECETCKAITEGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTEADYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ +P IISR Q+F F ++
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRTQRFDFKRITAES 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRIS-----VPLVQ 642
I+ + +I ++ ++ D ALK+IA ++G +RDA LSLL Q IS V L
Sbjct: 183 ILQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDA------LSLLDQVISFGDNNVTLDN 236
Query: 643 ELV--GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
L+ G ++ E L + L LS DT N +K ++ I+E G + L+ L D+L
Sbjct: 237 ALLVTGSVTQESLFNYLKFVLSKDTTNALKEIQQIVEQGKDANRLIEDLINYCRDLL 293
>gi|320159544|ref|YP_004172768.1| DNA polymerase III subunits gamma and tau [Anaerolinea thermophila
UNI-1]
gi|319993397|dbj|BAJ62168.1| DNA polymerase III gamma and tau subunits [Anaerolinea thermophila
UNI-1]
Length = 553
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 170/293 (58%), Gaps = 7/293 (2%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q L +K+ PR + +VGQ+ + Q L NAV +VG Y+F GP GTGKT+ AR+ A+A+N
Sbjct: 3 QALYRKWRPRLWEQVVGQDHIIQTLRNAVRTGRVGHAYLFAGPRGTGKTTTARLLAKAVN 62
Query: 469 CQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYR 526
C E P +PC C CI+ + G+ ++ E+ N E + DL D + + +Y+
Sbjct: 63 CLE-EDPAKRPCDQCAHCIAVNEGRFLDLIEIDAASNTSVEDVRDLRDKINFAPSQGRYK 121
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+++ D+ LS +++A+ K ++ P +FIL ++ + +P ++SRCQ+ F ++
Sbjct: 122 VYIIDEVHMLSTAAFNALLKTLEEPPAHAIFILATTEVHKIPATVLSRCQRHEFRRVPVQ 181
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVG 646
I L+ A+++G+ +D+DAL +IA ++ GS RDA L+QLS G+R+++ +VQ ++G
Sbjct: 182 QIAALLRQKAAEDGLAVDEDALLMIARQATGSFRDAISILDQLSSTGERVTLEMVQSVLG 241
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAG 699
+ E + L+D L+ + ++ ++ ++ G +P Q A + D L G
Sbjct: 242 TAAGEPIRLLVDAILARNAAQGLQIIQQTLDGGADP----RQFARQVVDYLRG 290
>gi|343524409|ref|ZP_08761367.1| DNA polymerase III, subunit gamma and tau [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
gi|343398058|gb|EGV10591.1| DNA polymerase III, subunit gamma and tau [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
Length = 554
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 163/292 (55%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQKVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPHQKNGEPCNECYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
I+ ++WI +E I + DA+++IA R++G +RDA L+Q Q +++ + +E+
Sbjct: 182 IVAHIEWILQQENIGFENDAVQVIARRAEGGMRDALSILDQALSFTQDNQLTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + L+ DT ++NL VI ++G +A +TD+L
Sbjct: 242 GSISLGALDAYVTAVLTHDTSAALENLDVIFDSG-------KNMARFVTDLL 286
>gi|161506948|ref|YP_001576902.1| DNA polymerase III, gamma/tau subunit [Lactobacillus helveticus DPC
4571]
gi|160347937|gb|ABX26611.1| DNA polymerase III, gamma/tau subunit [Lactobacillus helveticus DPC
4571]
Length = 595
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 180/336 (53%), Gaps = 16/336 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF ++GQ + L NA+ R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDSVIGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +CI+ D+G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECANCIAADKGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKDD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ +++I +E I+ + AL +IA +DG +RDA L+Q LS +R++ E+ G
Sbjct: 183 LEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKERVNYQDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD----ILAG--- 699
+ E + +L L + + +K + + G ++ +L + T I AG
Sbjct: 243 FAAKENIEKILLALLEQNPESALKLAQTELTQGASSKNILDELIDMATKSLMLIKAGDDR 302
Query: 700 -----SYDF---TKDRHRRKFFRRQPLSKEEMEKLR 727
S DF KD + F+R L+ + LR
Sbjct: 303 QGTFLSEDFVQKVKDIPTKIFYRLITLANNALNDLR 338
>gi|418964892|ref|ZP_13516680.1| DNA polymerase III, subunit gamma and tau [Streptococcus
constellatus subsp. constellatus SK53]
gi|383344293|gb|EID22462.1| DNA polymerase III, subunit gamma and tau [Streptococcus
constellatus subsp. constellatus SK53]
Length = 554
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 163/292 (55%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQKVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPHRKNGEPCNECYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
I+ ++WI +E I + DA+++IA R++G +RDA L+Q L Q +++ + +E+
Sbjct: 182 IVAHIEWILQQENIGFENDAVQIIARRAEGGMRDALSILDQALSLTQDNQLTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + L DT ++NL VI ++G +A +TD+L
Sbjct: 242 GSISLGALDAYVTAVLMHDTSAALENLDVIFDSG-------KNMARFVTDLL 286
>gi|422862770|ref|ZP_16909402.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK408]
gi|327473978|gb|EGF19391.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK408]
Length = 556
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 165/292 (56%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR--ISVPLVQELV 645
II ++WI +EGI+ +++ +++IA R++G +RDA L+Q L Q ++ + +E+
Sbjct: 182 IIGHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENLLTTDIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + ++ D V + NL +I ++G +A +TD+L
Sbjct: 242 GSISLGALDAYVAALIAHDAVTALDNLNLIFDSG-------KNMARFVTDLL 286
>gi|297543594|ref|YP_003675896.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296841369|gb|ADH59885.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 516
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 105/363 (28%), Positives = 198/363 (54%), Gaps = 9/363 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q+L +KY P++F+++VGQ + + L N + ++G Y+F G GTGKTS A+IFA+A+
Sbjct: 2 YQSLYRKYRPKSFKEVVGQEHIVKTLKNQIKLNRIGHAYLFTGTRGTGKTSIAKIFAKAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C+ C + + + ++ E+ N + +L ++++ + ++Y++
Sbjct: 62 NCLNNTEGEPCNSCDICHAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQTKYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ D LP I+SRCQ+F F ++
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPSHVIFILATTEPDKLPDTILSRCQRFDFKRIPTRL 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I L I + GI+I+ LK IA +GS+RDA LEQ +S I+ V E++G
Sbjct: 182 IAQNLDRICNDSGIKIEDKGLKTIALYGNGSMRDAISLLEQCISYKEGFITYEDVCEMLG 241
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+ +DE L LLD + D ++K L I+ G++ + L ++ D++ Y +
Sbjct: 242 VANDEMLFSLLDYINAKDVAASLKQLDKILSYGIDLGNFLKSLTYILRDMVL--YKTGGE 299
Query: 707 RHRRKFFRRQPLSKEEMEK-----LRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA-PD 760
+ + KE+++ L AL+ + +++++ + LT L +L+L P+
Sbjct: 300 ELKEILYSNAETIKEKVQNFGTAFLTNALEKFTNLQREIKYAIAPLTLLEITILRLIKPE 359
Query: 761 QQY 763
Y
Sbjct: 360 ISY 362
>gi|404491942|ref|YP_006716048.1| DNA polymerase III subunits gamma and tau [Pelobacter carbinolicus
DSM 2380]
gi|77544072|gb|ABA87634.1| DNA polymerase III, gamma and tau subunits [Pelobacter carbinolicus
DSM 2380]
Length = 582
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 121/373 (32%), Positives = 190/373 (50%), Gaps = 44/373 (11%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P++F DLVGQ V+Q L NA+ +V ++F G G GKTS ARIFA+ALNC+
Sbjct: 6 LARKYRPQSFDDLVGQEHVSQTLGNAIKTGRVHHAFLFTGARGVGKTSAARIFAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
P+PC C SC G+ ++ E+ N + I +L +N+ S+Y+IF+
Sbjct: 66 QGLSPQPCNVCQSCREISAGQGLDVFEIDGASNTGVDDIRELRENIRYLPSRSRYKIFII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS ++++A+ K ++ P FI ++ +P I+SRCQ+F F K+ I+
Sbjct: 126 DEVHMLSTNAFNALLKTLEEPPEHAKFIFATTEPHKIPITILSRCQRFDFRKIPLPLIVA 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLIS 649
L+ IA+ EGI I + +L L+A R +GS+RDA+ T +Q ++ G + VQ L+G++
Sbjct: 186 RLKEIAAAEGISISERSLGLVARRGEGSMRDAQSTFDQVIAFCGDAVGEDDVQGLLGMVD 245
Query: 650 DEKLVDLLDLALSADT------------------------VNTVKNLRVIMETGVEPLAL 685
LVD L+ L D+ V T+++L V+++ EP AL
Sbjct: 246 RRLLVDTLESLLGHDSRRLLHCVCRVDELGHSFRQFCRELVETLRSL-VVLKVVPEPEAL 304
Query: 686 MSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSND 745
+ D T D R+ + E+E L +A+ L E +L S+
Sbjct: 305 L---------------DATPDELEEL---RRLSATVELEDLERAVTVLVRTEAELAGSSF 346
Query: 746 KLTWLTAALLQLA 758
L ALL+LA
Sbjct: 347 PRLALEMALLRLA 359
>gi|422854097|ref|ZP_16900761.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK160]
gi|422879031|ref|ZP_16925497.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1059]
gi|422928876|ref|ZP_16961818.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
ATCC 29667]
gi|422931849|ref|ZP_16964780.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK340]
gi|325696611|gb|EGD38500.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK160]
gi|332366531|gb|EGJ44277.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1059]
gi|339615880|gb|EGQ20545.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
ATCC 29667]
gi|339619282|gb|EGQ23863.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK340]
Length = 556
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 165/292 (56%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR--ISVPLVQELV 645
II ++WI +EGI+ +++ +++IA R++G +RDA L+Q L Q ++ + +E+
Sbjct: 182 IIGHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENLLTTDIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + ++ D V + NL +I ++G +A +TD+L
Sbjct: 242 GSISLGALDAYVAALIAHDAVTALDNLNLIFDSG-------KNMARFVTDLL 286
>gi|228995415|ref|ZP_04155086.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides Rock3-17]
gi|229003029|ref|ZP_04160887.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides Rock1-4]
gi|228758229|gb|EEM07416.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides Rock1-4]
gi|228764341|gb|EEM13217.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides Rock3-17]
Length = 562
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 197/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ K Y+F GP GTGKT+ A++FA+ +
Sbjct: 3 YQALYRTWRPQNFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKTI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPACLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPQHVIFILATTEPHKIPPTIISRCQRFEFRKISVHD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLATVVTNEGTKVEDEALQIVARAAEGGMRDALSLIDQAISYSDEVVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S + L +L++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDDMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRMLSEAMQP------EMIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ AD
Sbjct: 357 LC--QQFMVQTNGAD 369
>gi|289577298|ref|YP_003475925.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter
italicus Ab9]
gi|289527011|gb|ADD01363.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
italicus Ab9]
Length = 515
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 105/363 (28%), Positives = 198/363 (54%), Gaps = 9/363 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q+L +KY P++F+++VGQ + + L N + ++G Y+F G GTGKTS A+IFA+A+
Sbjct: 2 YQSLYRKYRPKSFKEVVGQEHIVKTLKNQIKLNRIGHAYLFTGTRGTGKTSIAKIFAKAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C+ C + + + ++ E+ N + +L ++++ + ++Y++
Sbjct: 62 NCLNNAEGEPCNSCDICHAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQTKYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ D LP I+SRCQ+F F ++
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPSHVIFILATTEPDKLPDTILSRCQRFDFKRIPTRL 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I L I + GI+I+ LK IA +GS+RDA LEQ +S I+ V E++G
Sbjct: 182 IAQNLDRICNDSGIKIEDKGLKTIALYGNGSMRDAISLLEQCISYKEGFITYEDVCEMLG 241
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+ +DE L LLD + D ++K L I+ G++ + L ++ D++ Y +
Sbjct: 242 VANDEMLFSLLDCINAKDVAASLKQLDKILSYGIDLGNFLKSLTYILRDMVL--YKTGGE 299
Query: 707 RHRRKFFRRQPLSKEEMEK-----LRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA-PD 760
+ + KE+++ L AL+ + +++++ + LT L +L+L P+
Sbjct: 300 ELKEILYNNPETIKEKVQNFGIAFLTNALEKFTNLQREIKYAISPLTLLEITILRLIKPE 359
Query: 761 QQY 763
Y
Sbjct: 360 ISY 362
>gi|307566326|ref|ZP_07628765.1| DNA polymerase III, subunit gamma and tau [Prevotella amnii CRIS
21A-A]
gi|307344903|gb|EFN90301.1| DNA polymerase III, subunit gamma and tau [Prevotella amnii CRIS
21A-A]
Length = 590
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 205/377 (54%), Gaps = 18/377 (4%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ-S 471
+KY P TF +VGQ+ + L NAV+ K+ Y+F GP G GKT+ ARIFA+A+NC+
Sbjct: 9 RKYRPATFSSVVGQSSLTTTLKNAVISGKLAHAYLFCGPRGVGKTTTARIFAKAINCEHP 68
Query: 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFV 529
+ + C C SC + + G+S NI E+ N E+I +L++ T PP +Y++F+
Sbjct: 69 VSDGEACNECESCKAFNEGRSYNIFELDAASNNSVENIKELMEQ--TRIPPQIGKYKVFI 126
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ LS +++A K ++ P +++FIL ++ + I+SRCQ + F +M ADII
Sbjct: 127 IDEVHMLSSQAFNAFLKTLEEPPAQIIFILATTEKHKILPTILSRCQIYDFERMSVADII 186
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLI 648
L+ +A KE I ++ AL +IA ++DG +RDA +Q++ Q +I+ V E + ++
Sbjct: 187 KHLEKVAEKENITYEESALNVIAEKADGGMRDALSIFDQVASFSQGKITYQKVTEDLNVL 246
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS-------Y 701
+ D++DL+L + L + G +P +++ LA + +IL
Sbjct: 247 DIDNYFDIIDLSLQNKVSEIMLLLNNAINRGFDPGRIINGLAAHVRNILMAKDISTLPLI 306
Query: 702 DFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQ 761
+ +K + R ++ Q SK ++ L +AL+ +++ + R S++K L+++A
Sbjct: 307 EVSKQQMER--YKNQA-SKCPVKFLYKALEKMNQCDINYRQSSNKRLLAEITLIEVAQIT 363
Query: 762 QYVLPSSSADTSFSHSP 778
Q + ++ D+S SP
Sbjct: 364 Q--IDDNADDSSSGRSP 378
>gi|411118937|ref|ZP_11391317.1| DNA polymerase III, subunit gamma/tau [Oscillatoriales
cyanobacterium JSC-12]
gi|410710800|gb|EKQ68307.1| DNA polymerase III, subunit gamma/tau [Oscillatoriales
cyanobacterium JSC-12]
Length = 653
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 198/364 (54%), Gaps = 17/364 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF +LVGQ +A L+NA+ ++++ Y+F G GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQTFAELVGQEAIAATLTNAIQQQRIAPAYLFTGARGTGKTSSARILAKSL 62
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC ++P PCG C C + RG + ++ E+ N ++I +L++ + +Y
Sbjct: 63 NCLKSKKPTETPCGVCEVCQAIARGSALDVIEIDAASNTGVDNIRELIERAQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ LS +++A+ K ++ P RVVF+L ++ + IISRCQ+F + ++
Sbjct: 123 KVYIIDEVHMLSTAAFNALLKTLEEPPERVVFVLATTDPQRVLPTIISRCQRFDYRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L+ IA +E I I A+ L+A + G LRDAE L+QLSLL +I + V +LV
Sbjct: 183 DAMVTHLRHIADQETIPITDGAITLVAQIAQGGLRDAESLLDQLSLLSGKIDIEHVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNT-VKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT 704
G + + L+ LL A++ DT T + + R +M+ G EPL ++ LA+ D+L T
Sbjct: 243 GSVPERDLLGLLT-AIAQDTPETLLDSTRRLMDRGREPLIVLQNLASFYRDLLIAKTAPT 301
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQAL---------KTLSEAEKQLRMSNDKLTWLTAALL 755
R + +++ L Q L + L AE QL+ + WL L+
Sbjct: 302 ----RNDLVALTSPTWQQLCDLAQTLDLSVILAGQQHLRAAEVQLKHTTQPQLWLEVTLM 357
Query: 756 QLAP 759
L P
Sbjct: 358 GLLP 361
>gi|282852745|ref|ZP_06262087.1| DNA polymerase III, subunit gamma and tau [Lactobacillus gasseri
224-1]
gi|282556487|gb|EFB62107.1| DNA polymerase III, subunit gamma and tau [Lactobacillus gasseri
224-1]
Length = 602
Score = 179 bits (454), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 163/286 (56%), Gaps = 1/286 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF +V Q + L NA+ R K+ ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDGVVDQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +C++ D+G +I E+ N + I D+ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECENCLAADKGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+I + +I +E I+ ++ AL++IA +DG +RD+ L+Q LS ++ ++ G
Sbjct: 183 LIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYDDALKITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV 692
+ EK+ +L L T + + +++ G ++ +L ++
Sbjct: 243 YAAQEKIEQVLLDLLKGQTSEAFEIVHNLLQDGASTKNILDELISL 288
>gi|359404867|ref|ZP_09197676.1| DNA polymerase III, subunit gamma and tau [Prevotella stercorea DSM
18206]
gi|357559896|gb|EHJ41321.1| DNA polymerase III, subunit gamma and tau [Prevotella stercorea DSM
18206]
Length = 587
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 117/365 (32%), Positives = 189/365 (51%), Gaps = 26/365 (7%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS-L 472
KY P TF +VGQ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC +
Sbjct: 10 KYRPMTFDSVVGQAALTATLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCMNPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVF 530
+ + CG C SC + G+S NI E+ N E I L++ T PP +Y++F+
Sbjct: 70 TEGEACGECESCKAFAEGRSYNIFELDAASNNSVEHIKSLMEQ--TRIPPQVGKYKVFII 127
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A K ++ P VVFIL ++ + I+SRCQ + F +M + I
Sbjct: 128 DEVHMLSQAAFNAFLKTLEEPPAHVVFILATTEKHKILPTILSRCQIYDFERMSVENTIN 187
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+++A KEGI +++AL LIA ++DG +RDA +Q + Q I+ V E + +
Sbjct: 188 HLKYVAEKEGITYEEEALALIAEKADGGMRDALSIFDQTASFCQGNITYAKVIEDLNELD 247
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR 709
+ +D AL+ + L I+E G + L++ LA+ + ++L KD
Sbjct: 248 TDNYFKFVDYALANKVSECMVLLNAIIEKGFDGGNLINGLASHVRNVL-----MAKDAQT 302
Query: 710 RKFFRRQPLSKEEMEK------------LRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
K +S+++ EK L +ALK +++ + R S++K + L+Q+
Sbjct: 303 LKLLE---VSEKQREKYSAQAKACPTQFLYKALKLMNQCDLSYRQSSNKRLLVELTLIQV 359
Query: 758 APDQQ 762
A Q
Sbjct: 360 AQITQ 364
>gi|256751423|ref|ZP_05492301.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
ethanolicus CCSD1]
gi|256749642|gb|EEU62668.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
ethanolicus CCSD1]
Length = 518
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 106/363 (29%), Positives = 196/363 (53%), Gaps = 9/363 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q+L +KY P++F+++VGQ + + L N + K+G Y+F G GTGKTS A+IFA+A+
Sbjct: 2 YQSLYRKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAYLFTGTRGTGKTSVAKIFAKAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + + + ++ E+ N + +L ++++ + ++Y++
Sbjct: 62 NCLNNTDGEPCNSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQAKYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ D LP I+SRCQ+F F ++
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFKRIPTRL 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I L I + G++I++ LK IA +GS+RDA LEQ + + I+ V E++G
Sbjct: 182 IAQNLDRICNDSGMKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKEGLITYEDVCEMLG 241
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+ +DE L LLD + D ++K L I+ G++ + L ++ D++ Y +
Sbjct: 242 VANDEVLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRDMVL--YKTGGE 299
Query: 707 RHRRKFFRRQPLSKEEMEK-----LRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA-PD 760
+ + KE ++ L AL+ + +K++R + LT L +L+L P+
Sbjct: 300 ELKEILYSDVETIKERVQNFGTAFLTNALEKFTNLQKEVRYAISPLTLLEVTILRLIKPE 359
Query: 761 QQY 763
Y
Sbjct: 360 ISY 362
>gi|418036678|ref|ZP_12675086.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
bulgaricus CNCM I-1519]
gi|354687125|gb|EHE87230.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
bulgaricus CNCM I-1519]
Length = 590
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/339 (29%), Positives = 185/339 (54%), Gaps = 11/339 (3%)
Query: 423 LVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCN 482
+VGQ + L N+++R KV ++F GP GTGKTSCA+IFA+ALNC +L++ +PC C+
Sbjct: 1 MVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCLNLQEGEPCNECS 60
Query: 483 SCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWS 542
+C++ D+G +I E+ N + I DLLD + + +Y++++ D+ LS +++
Sbjct: 61 NCLAADQGAMPDIIEMDAASNNSVDEIRDLLDKVHYAPTEGKYKVYIIDEVHMLSISAFN 120
Query: 543 AISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIE 602
A+ K ++ P VVFIL ++ L +P IISR Q++ F + + ++ +++I +EG+E
Sbjct: 121 ALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRFSNEAMVQRMEYILGQEGVE 180
Query: 603 IDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDEKLVDLLDLAL 661
+ ALK+IA +DG +RDA L+Q LS + E+ G + E++ LL L
Sbjct: 181 YEDKALKVIAQVADGGMRDALSILDQLLSFEKSSVRYEDALEVTGFAAQEQVEKLLLALL 240
Query: 662 SADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYDFTKDRHRRKFFRRQP 717
+ D+ + + ++ G +++++ ++ + G +F D ++ ++ P
Sbjct: 241 NGDSQTALDLAKSAIQDGASAQNILNEIISLTVQAMLFTKTGQGEFLTDDFAQEIAQQSP 300
Query: 718 LSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
++ Q + ++A LR +N + L L+Q
Sbjct: 301 ------DRFSQIIDQANDALGSLRFTNQQQIPLEVFLVQ 333
>gi|296120960|ref|YP_003628738.1| DNA polymerase III subunits gamma and tau [Planctomyces limnophilus
DSM 3776]
gi|296013300|gb|ADG66539.1| DNA polymerase III, subunits gamma and tau [Planctomyces
limnophilus DSM 3776]
Length = 682
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 168/288 (58%), Gaps = 1/288 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P+TF ++VGQ+ +AQ L NA++ +V Y+F G G GKTS ARIFA+ALNC
Sbjct: 9 LARRFRPQTFSEVVGQDRIAQTLRNAILEGRVAHAYLFTGARGVGKTSMARIFAKALNCP 68
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ + PC C C + G+ ++ E+ N + I L N+ ++Y++++
Sbjct: 69 NAVEAVPCNTCEICRAVSAGQDVDVSEIDGASNRGIDDIRTLRANVNVKSMRTRYKVYII 128
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P+ V FI ++ + LP I+SRCQ+F F + I
Sbjct: 129 DEVHMLTKEAFNALLKTLEEPPQGVKFIFCTTEPNKLPDTILSRCQRFDFGTVNIESIGE 188
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVGLIS 649
L+ IA+ EG ++D +A++L++ R++GS+RD++ +Q+ G Q ++V V L+G S
Sbjct: 189 RLRQIANTEGFQVDDEAIELVSRRANGSMRDSQSLFDQVLAFGHQHVTVADVHRLLGTAS 248
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
D+++++L+ + ++ L + GV+ AL QL + + D++
Sbjct: 249 DDRVIELVQALIDRHAARALEALDQAILDGVQLDALTDQLISYLRDLM 296
>gi|304382042|ref|ZP_07364594.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella marshii DSM
16973]
gi|304336796|gb|EFM03020.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella marshii DSM
16973]
Length = 592
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/357 (31%), Positives = 189/357 (52%), Gaps = 16/357 (4%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS- 471
+KY P +F +VGQ + L NAV K+ Y+F GP G GKT+CARIFARA+NC +
Sbjct: 9 RKYRPMSFDSVVGQQALTTTLRNAVKSGKLAHAYLFCGPRGVGKTTCARIFARAINCMNP 68
Query: 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFV 529
+ + CG C SC + + +S NI E+ N E+I L+D T PP +Y++F+
Sbjct: 69 TTEGEACGTCESCKAFNEQRSYNIFELDAASNNSVENIKALMDQ--TRIPPQVGKYKVFI 126
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M AD I
Sbjct: 127 IDEVHMLSTQAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVADTI 186
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLI 648
L+ +A +EGI +++AL +IA ++DG +RDA +Q + Q +I+ V E + ++
Sbjct: 187 AHLKRVAEQEGIGYEEEALAVIAEKADGGMRDALSIFDQSASFCQGQITYKKVIEDLNVL 246
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS-------Y 701
+ ++D+AL + N + L ++ G + + LA+ ++L
Sbjct: 247 DSDNYFRIIDMALKQEVSNMMVLLDTVIGKGFDGGIFIQGLASYTRNVLMAKDERTLPLL 306
Query: 702 DFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ +K + R + Q + M K ALK +++ + R SN+K + L+Q+A
Sbjct: 307 EVSKKQAERYKEQAQRCPTDFMYK---ALKLMNDCDVHYRQSNNKRLLVELTLIQIA 360
>gi|302380881|ref|ZP_07269343.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna
ACS-171-V-Col3]
gi|302311259|gb|EFK93278.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna
ACS-171-V-Col3]
Length = 537
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 200/356 (56%), Gaps = 11/356 (3%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q + +KY P TF + GQ + L N + + + Y+F G GTGKTSCA+IFARA+N
Sbjct: 2 QAIYRKYRPDTFDKVYGQKHITDILKNQIETKNISHAYIFSGSRGTGKTSCAKIFARAIN 61
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYR 526
C L+ PC C +C+S + +I E+ N + I +L D ++ PP+ +Y+
Sbjct: 62 CLDLQNGNPCNKCENCLSSLEESTLDIVEMDAASNRRIDDIRELRDKVIY--PPTKLKYK 119
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+++ D+ ++ + ++A+ K+++ P+ +VFIL ++ +D +P I+SRCQ++ F +
Sbjct: 120 VYIIDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMINSK 179
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELV 645
DI +++I + ++D+DA++LIA+++DG++RDA L+Q LS+ + I+ + +++
Sbjct: 180 DISDNIKYILNDLSRKMDEDAIELIANKADGAMRDALSILDQVLSIEKENITKQDINDIL 239
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLA-LMSQLATVITDILAGSYDFT 704
G++ ++ + L++ + D + NL I +P+ +M +L ++L
Sbjct: 240 GIVDNKGIFKLVNSIIKKDATEVLGNLYTISHN--KPVENVMDELLNHFRNLLLSKNGLE 297
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLS---EAEKQLRMSNDKLTWLTAALLQL 757
K R + ++ E+ RQ ++++S E +K+L+ ++++ L +++L
Sbjct: 298 KIRQNNTQYNDDYNAQSELITNRQIVESMSIIIEHQKKLKQADNQKALLEILVMRL 353
>gi|320546449|ref|ZP_08040764.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus equinus
ATCC 9812]
gi|320448834|gb|EFW89562.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus equinus
ATCC 9812]
Length = 559
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 162/292 (55%), Gaps = 6/292 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQTVISTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPHQVNGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K A
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTANVVFILATTELHKIPATILSRVQRFEFKAIKPAA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSL-LGQRISVPLVQELV 645
I L I KEGI DKDAL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IREHLGHILDKEGISYDKDALTLIARRAEGGMRDALSILDQALSLTTDNHVSLAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + L+ +T ++NL I ++G MS+ AT + + L
Sbjct: 242 GSISMAALDDFVANVLAQETSKALENLETIFDSGKS----MSRFATDLLNYL 289
>gi|297587504|ref|ZP_06946148.1| DNA polymerase III, gamma/tau subunit DnaX [Finegoldia magna ATCC
53516]
gi|297574193|gb|EFH92913.1| DNA polymerase III, gamma/tau subunit DnaX [Finegoldia magna ATCC
53516]
Length = 538
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 198/356 (55%), Gaps = 11/356 (3%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q + +KY P TF + GQ + L N + + + Y+F G GTGKTSCA+IFARA+N
Sbjct: 2 QAIYRKYRPDTFDKVYGQKHITDILKNQIETKNISHAYIFSGSRGTGKTSCAKIFARAIN 61
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYR 526
C L+ PC C +C+S + +I E+ N + I +L D ++ PP+ +Y+
Sbjct: 62 CLDLQDGNPCNKCENCLSSLEESTLDIVEMDAASNRRIDDIRELRDKVIY--PPTKLKYK 119
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+++ D+ ++ + ++A+ K+++ P+ +VFIL ++ +D +P I+SRCQ++ F +
Sbjct: 120 VYIIDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMINAK 179
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELV 645
DI +++I + ++D DA+KLIA+++DG++RDA L+Q LS+ + I+ + +++
Sbjct: 180 DISDNIKYILNDLNRKMDDDAIKLIANKADGAMRDALSILDQVLSIEKENITKQDINDIL 239
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLA-LMSQLATVITDILAGSYDFT 704
G++ ++ + L++ + D + NL I +P+ +M +L ++L
Sbjct: 240 GIVDNKGIFKLVNSIIKKDAAEVLNNLYTISHN--KPVENVMDELLNHFRNLLLSKNGLE 297
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLS---EAEKQLRMSNDKLTWLTAALLQL 757
R + S+ E+ RQ ++++S E +K+L+ ++++ L +++L
Sbjct: 298 NIRQNNTQYNDDYNSQSELITNRQIVESMSIIIEHQKKLKQADNQKALLEILVMRL 353
>gi|417926293|ref|ZP_12569697.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna
SY403409CC001050417]
gi|341589661|gb|EGS32928.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna
SY403409CC001050417]
Length = 537
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 200/356 (56%), Gaps = 11/356 (3%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q + +KY P TF + GQ + L N + + + Y+F G GTGKTSCA+IFARA+N
Sbjct: 2 QAIYRKYRPDTFDKVYGQKHITDILKNQIETKNISHAYIFSGSRGTGKTSCAKIFARAIN 61
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYR 526
C L+ PC C +C+S + +I E+ N + I +L D ++ PP+ +Y+
Sbjct: 62 CLDLQNGNPCNKCENCLSSLEESTLDIVEMDAASNRRIDDIRELRDKVIY--PPTKLKYK 119
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+++ D+ ++ + ++A+ K+++ P+ +VFIL ++ +D +P I+SRCQ++ F +
Sbjct: 120 VYIIDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMINSK 179
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELV 645
DI +++I + ++D+DA++LIA+++DG++RDA L+Q LS+ + I+ + +++
Sbjct: 180 DISDNIKYILNDLSRKMDEDAIELIANKADGAMRDALSILDQVLSIEKENITKQDINDIL 239
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLA-LMSQLATVITDILAGSYDFT 704
G++ ++ + L++ + D + NL I +P+ +M +L ++L
Sbjct: 240 GIVDNKGIFKLVNSIIKKDATEVLGNLYTISHN--KPVENVMDELLNHFRNLLLSKNGLE 297
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLS---EAEKQLRMSNDKLTWLTAALLQL 757
K R + ++ E+ RQ ++++S E +K+L+ ++++ L +++L
Sbjct: 298 KIRQNNTQYNDDYNAQSELITNRQIVESMSIIIEHQKKLKQADNQKALLEILVMRL 353
>gi|229083335|ref|ZP_04215695.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-44]
gi|228699982|gb|EEL52607.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-44]
Length = 562
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 197/375 (52%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ K Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQNFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPACLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPQHVIFILATTEPHKIPPTIISRCQRFEFRKISVHD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLATVVTNEGTKVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S + L +L++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDDMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVMVDDQFRMLSEAMQP------ETIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ D
Sbjct: 357 LC--QQFMVQANGTD 369
>gi|152973871|ref|YP_001373388.1| DNA polymerase III subunits gamma and tau [Bacillus cytotoxicus NVH
391-98]
gi|152022623|gb|ABS20393.1| DNA polymerase III, subunits gamma and tau [Bacillus cytotoxicus
NVH 391-98]
Length = 562
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/372 (26%), Positives = 200/372 (53%), Gaps = 13/372 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ K Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFADVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPACLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPQHVIFILATTEPHKIPPTIISRCQRFEFRKISVHD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L+ + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLETVVTNEGTKVENEALQIVARAAEGGMRDALSIIDQAISYSDEIVTTEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+S + L +L++ D ++ + +M G +P+ M D+L +
Sbjct: 243 SVSQQYLGNLVECIRDNDVSRALRIIDDMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 707 RHRRKF-----FRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759
+ FR + E M E + + + TLS+ +++++ +N +L ++QL
Sbjct: 303 HMLERVIVDDQFR---MLSEAMRPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC- 358
Query: 760 DQQYVLPSSSAD 771
QQ+++ ++ D
Sbjct: 359 -QQFMVQANGTD 369
>gi|292669040|ref|ZP_06602466.1| DNA polymerase III, gamma/tau subunit DnaX [Selenomonas noxia ATCC
43541]
gi|292649295|gb|EFF67267.1| DNA polymerase III, gamma/tau subunit DnaX [Selenomonas noxia ATCC
43541]
Length = 644
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 193/375 (51%), Gaps = 5/375 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L +++ P +F DLVGQ +++ LS AV + Y+F GP GTGKTS A+I ARAL
Sbjct: 36 YVALYRRWRPESFADLVGQEHISRTLSRAVASGQTSHAYLFTGPRGTGKTSTAKILARAL 95
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC PCG C SC S G S ++ E+ N + I DL +++ + +Y+I
Sbjct: 96 NCAEGPTLTPCGVCESCRSISDGSSMDVFEIDAASNRGIDEIRDLRESVKFAPTAGRYKI 155
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P RV+FIL ++ +P I SRCQ++ F ++ +
Sbjct: 156 YIIDEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRCQRYDFHRITVTE 215
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I L ++ + GI ++DAL LIA ++DG +RDA L+Q + L + +++ VQE +G
Sbjct: 216 IRDRLLYVCRESGIAAEEDALGLIALQADGGMRDALSILDQCTALAEGQLTTERVQEALG 275
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
L+ + + D + L +++ G E ++ +LA ++ G+
Sbjct: 276 LVGHAWIEKMAMQIADCDAPALIAQLGELLQNGRELKQILGELAQYFRSLMIVGVGGTVS 335
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
+ ++ R+ + EK+ L+TL+E ++LR S + + L
Sbjct: 336 AAEFCAEQEDVLREEAKRFTQEKIMTILRTLNETMQELRFSPQPRIAVETMFIALCRAAD 395
Query: 763 YVLPSSSADTSFSHS 777
P ++ T+ S+S
Sbjct: 396 APAPQTAEQTAASNS 410
>gi|385261082|ref|ZP_10039214.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. SK140]
gi|385189481|gb|EIF36945.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. SK140]
Length = 554
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 162/292 (55%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEIVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + E +PC C C + G ++ E+ N + I D+ D + +QY++
Sbjct: 62 NCPNQEGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIRDIRDKSTYAPSIAQYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTPNVVFILATTELHKIPATILSRVQRFEFKSIRTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
I + I KEGI+ D +A+++IA R++G +RDA L+Q L Q R++ + +E+
Sbjct: 182 IRDHIFHILEKEGIDYDSEAVEIIARRAEGGMRDALSILDQALSLTQDSRLTTAVSEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + + D ++NL +I + G ++ L + DIL
Sbjct: 242 GTISLSALDNYVAALAQKDVTRALENLNLIFDNGKSMTRFVTDLLQYLRDIL 293
>gi|15606894|ref|NP_214275.1| DNA polymerase III gamma subunit [Aquifex aeolicus VF5]
gi|2984127|gb|AAC07663.1| DNA polymerase III gamma subunit [Aquifex aeolicus VF5]
Length = 473
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 159/270 (58%), Gaps = 1/270 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
+KY P+ FR+++GQ + L NA+ +V Y+F GP G GKT+ ARI A+ALNC+
Sbjct: 6 FARKYRPKFFREVIGQEAPVRILKNAIKNDRVAHAYLFAGPRGVGKTTIARILAKALNCK 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ + +PCG C +C DRG ++ E+ N + + L + + +Y++++
Sbjct: 66 NPSKGEPCGECENCREIDRGVFPDLIEMDAASNRGIDDVRALKEAVNYKPIKGKYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P R VF+L ++ D + I+SRCQ+ F K++ +I
Sbjct: 126 DEAHMLTKEAFNALLKTLEEPPPRTVFVLCTTEYDKILPTILSRCQRIIFSKVRKEKVIE 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+ I KEGIE ++ AL+++A S+G +RDA L+Q S+ G+ R++ +V+ +G++S
Sbjct: 186 YLKKICEKEGIECEEGALEVLAHASEGCMRDAASLLDQASVYGEGRVTKEVVENFLGILS 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETG 679
E + L L L+++ +K LR + E G
Sbjct: 246 QESVRSFLKLLLNSEVDEAIKFLRELSEKG 275
>gi|445112454|ref|ZP_21377102.1| DNA polymerase III, subunit gamma and tau [Prevotella nigrescens
F0103]
gi|444841678|gb|ELX68692.1| DNA polymerase III, subunit gamma and tau [Prevotella nigrescens
F0103]
Length = 594
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/355 (30%), Positives = 191/355 (53%), Gaps = 14/355 (3%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ-SL 472
KY P +F +VGQ + L NAV +++ Y+F GP G GKT+CARIFA+ +NC+
Sbjct: 10 KYRPMSFASVVGQQALTTTLMNAVKSKRLAHAYLFCGPRGVGKTTCARIFAKTINCEHPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVF 530
+Q + C C SC + + G+S NI E+ N E+I L++ T PP +Y++F+
Sbjct: 70 DQGEACNECESCRAFNEGRSYNIFELDAASNNSVENIKTLMEQ--TRIPPQIGRYKVFII 127
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M II
Sbjct: 128 DEVHMLSSSAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMSVPGIIN 187
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+ +A KEGI ++ AL +IA ++DG +RDA +Q + Q I+ V E + ++
Sbjct: 188 HLKAVAEKEGIAYEEAALNVIAEKADGGMRDALSIFDQAASFSQGNITYRKVIEDLNVLD 247
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS------YDF 703
+ +++DLA+ + L ++ G + L++ LA+ + ++L
Sbjct: 248 ADNYFNIMDLAVENKVPEIMVLLNNVINKGFDGGNLINGLASHVRNVLMAKDPQTLPLLE 307
Query: 704 TKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
T D R+++ RQ +K + L +AL+ ++ + + R S++K + L+Q+A
Sbjct: 308 TSDEQRQRY--RQQAAKCPTQFLYKALEIMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|342214108|ref|ZP_08706816.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral
taxon 780 str. F0422]
gi|341595793|gb|EGS38432.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral
taxon 780 str. F0422]
Length = 764
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 184/338 (54%), Gaps = 8/338 (2%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P+ F D+VGQ+ V+ L A+ KV Y+F GP GTGKTS A+IFARA+NC+
Sbjct: 6 LYRRWRPKQFTDVVGQHHVSDTLQRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
PCG C SC +G++ ++ E+ N + + L + + ++F+
Sbjct: 66 QGPTDTPCGQCESCQQMLQGQALDVIEIDAASNRGIDEVRALREQVNFLPVVGHKKVFII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++W+A+ K ++ P V+FI ++ + LP I+SRCQ++ F ++ DI
Sbjct: 126 DEAHMLTNEAWNALLKTIEEPPSHVMFIFATTESEKLPVTILSRCQRYTFRRITAKDITA 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLS-LLGQRISVPLVQELVGLIS 649
L +A + I +D A ++IA +DG LRDA L+Q S + + I+ PLV+ ++GL+S
Sbjct: 186 HLLHVAKESNISLDPAAAQVIAVHADGGLRDALSILDQCSGMTSEMITAPLVETMIGLVS 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL-----ATVITDILAGSYD-F 703
++D++D+ + + ++ + ++ G + +++ L A ++ +L + +
Sbjct: 246 KSWVLDMVDILKAGNGAALLQAVDEALQMGRDARQIVTALVEHLRAMIVAKVLPEAEELL 305
Query: 704 TKDRHRRKFF-RRQPLSKEEMEKLRQALKTLSEAEKQL 740
D H+ + + LS EE+ + L+T+ KQ+
Sbjct: 306 AYDTHKERLLAQANALSMEEIGRYINVLQTVQNNAKQV 343
>gi|306490882|gb|ADM95000.1| DNA polymerase III gamma/tau subunits [uncultured candidate
division JS1 bacterium]
Length = 568
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 194/350 (55%), Gaps = 13/350 (3%)
Query: 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466
++Q++ +K+ P+ F D+VGQ + Q L NA+ ++ Y+F GP G GKT+ ARI A+A
Sbjct: 3 KYQSIYRKWRPQLFEDIVGQKHITQTLKNAIKLNRISHAYLFSGPRGVGKTTTARILAKA 62
Query: 467 LNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYR 526
LNCQ PC C CI ++G+S ++ E+ N + I +L + + +Y+
Sbjct: 63 LNCQKGPTEYPCNQCAQCIRINQGQSMDVLEIDGASNRGIDEIRELRSKIGFAPAEGKYK 122
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
I++ D+ L+ ++++A+ K ++ P +V+FI +++ +P I+SRCQ F+F ++
Sbjct: 123 IYIIDEVHMLTNEAFNALLKTLEEPPSQVLFIFATTAPQKVPKTILSRCQCFYFRRLSLE 182
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVP-LVQELV 645
+++ L IA++E + ID +L+LIA + GS+RDAE L+Q+ ++ P +V+E++
Sbjct: 183 EMVEKLTKIATEEKLNIDLPSLRLIAESATGSMRDAESILDQVITYSEKQVTPEVVREIL 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDI-LAGSYDFT 704
GLI E LL ++ DT ++ + +++ GV+ + L + + L D
Sbjct: 243 GLIPQEIFWRLLKAIIARDTKMGLEIINQLVKEGVDFHKFVQDLIVYVHQVSLLKILD-- 300
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQA-----LKTLSEAEKQLRMSNDKLTW 749
KD F R S EE EKL + ++T+ ++L++ +K+ +
Sbjct: 301 KDNSDAIFSR----SGEESEKLSELSNSTNIETILNIIEELKLVEEKIRY 346
>gi|306821443|ref|ZP_07455047.1| DNA polymerase III, gamma/tau subunit DnaX [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|304550518|gb|EFM38505.1| DNA polymerase III, gamma/tau subunit DnaX [Eubacterium yurii
subsp. margaretiae ATCC 43715]
Length = 538
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 163/288 (56%), Gaps = 6/288 (2%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P F +++GQ+ V L N + K+ YVF G GTGKTS A++FA++LNCQ
Sbjct: 5 LYRKYRPDNFENIIGQSQVTDVLKNQIKEDKISHAYVFSGTRGTGKTSTAKVFAKSLNCQ 64
Query: 471 SLE-QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFV 529
+ + PC C SC + + E+ N ++I L DN++ +Y++++
Sbjct: 65 NYSPESGPCNHCESC----KNDYVDTIEIDAASNNSVDNIRALKDNIIYRPSFGRYKVYI 120
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ LS +++A+ K ++ P V+FIL ++ ++ +P I+SRCQKF F K+ DI
Sbjct: 121 IDEVHMLSIGAFNALLKTLEEPPEHVIFILATTEINKIPATILSRCQKFEFKKVSIEDIK 180
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLIS 649
L++I E I D DA+ IA+ SDG LRDA TL+Q++ LG RIS+ + + G+ S
Sbjct: 181 SRLKFIVENENIPYDVDAIDYIATMSDGGLRDAISTLDQVASLG-RISMENLDFVTGMTS 239
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
K+ + L + +T +++K + + V+ L SQ+ + + DI+
Sbjct: 240 ISKIDEYLKSVFTKNTFDSLKTVNEMTSDNVDIKKLPSQIISRLLDII 287
>gi|406981790|gb|EKE03187.1| hypothetical protein ACD_20C00234G0009 [uncultured bacterium]
Length = 653
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/359 (32%), Positives = 194/359 (54%), Gaps = 11/359 (3%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+ F+D+VGQ + + LSNA+ KV Y+ GP GTGKTS ARIFA++LNCQ
Sbjct: 8 LYRKYRPQKFKDIVGQESIVRTLSNALELNKVAHAYLLTGPRGTGKTSTARIFAKSLNCQ 67
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ PCG C SC+ R + ++ E+ N E +LL+ + +Y+I++
Sbjct: 68 NGPTLDPCGECPSCLDIARSNAIDVIEIDAASNRKVEDARNLLEKVQFVPVAGKYKIYII 127
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++ + K ++ P +VFIL ++ + + IISRCQ+F F +++ I+
Sbjct: 128 DEVHMLTTEAFNTLLKTLEEPPPNLVFILATTEAHKVLNTIISRCQRFDFRRIRQDLIVE 187
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG---QRISVPLVQELVGL 647
L+ I E I I+ AL LIA RS G LRDA L+Q+S+L + ++ + L+G
Sbjct: 188 RLKEIIKIENININDKALSLIARRSAGGLRDALSLLDQVSILASIQKEVTEKDILTLLGC 247
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD-ILAGSYD---- 702
+ ++ L L D + +T N + L +++ G EP+ ++ +L + +L + D
Sbjct: 248 LQEDTLYGLADAMANRNTSNLIAILDEVIQLGSEPIQILRELMNYFRNLLLVKTTDNIDE 307
Query: 703 -FTKDRHRRKFFRRQPLSKEEMEKLR--QALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
T +F+ E+ E L Q + LS EK LR+++ + WL AL+ +A
Sbjct: 308 IITMIDVSEQFYGEIKKQSEQFEVLEITQIIDKLSNYEKTLRVTSQQHLWLEVALISIA 366
>gi|423613650|ref|ZP_17589510.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD107]
gi|401241408|gb|EJR47797.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD107]
Length = 562
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/375 (26%), Positives = 194/375 (51%), Gaps = 19/375 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ K Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVGYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S + ++ V + G
Sbjct: 183 IVERLSTVVTSEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTSEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD---- 702
+S L +L++ D ++ + +M G +P+ M D+L
Sbjct: 243 SVSQRYLGNLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLE 302
Query: 703 ------FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D+ R QP E + + + TLS+ +++++ +N +L ++Q
Sbjct: 303 HMLERVIVDDQFRTLSEEMQP------EVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQ 356
Query: 757 LAPDQQYVLPSSSAD 771
L QQ+++ ++ D
Sbjct: 357 LC--QQFMMQANGTD 369
>gi|427714564|ref|YP_007063188.1| DNA polymerase III subunits gamma and tau [Synechococcus sp. PCC
6312]
gi|427378693|gb|AFY62645.1| DNA polymerase III, subunit gamma/tau [Synechococcus sp. PCC 6312]
Length = 634
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 167/292 (57%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+TF DLVGQ + L+NA+ + ++ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQTFADLVGQAAITTTLTNALQQERIAPAYLFCGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQPKP--CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + +P P CG C+ C + + ++ E+ N ++I +L++ + +Y
Sbjct: 63 NCLTAPKPTPSPCGVCDVCQAIAHSSALDVIEIDAASNTGVDNIRELIEKAQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P RV+F+L ++ + IISRCQ+F F ++
Sbjct: 123 KVYVVDECHMLSTSAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDFRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
AD++ L IA E I I+ +A+ L+A + G LRDAE L+QLSLL I++ V +L
Sbjct: 183 ADMVSHLTHIAELETININPEAVNLVAQIAQGGLRDAESLLDQLSLLDGEITIERVWDLA 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G + ++ L LL S ++ R ++E G EPL ++ L D L
Sbjct: 243 GSVPEQDLFQLLQAVKSQHPETLLEQTRHLLERGREPLIVLQNLTGFYRDFL 294
>gi|423068697|ref|ZP_17057485.1| hypothetical protein HMPREF9682_00706 [Streptococcus intermedius
F0395]
gi|355365997|gb|EHG13716.1| hypothetical protein HMPREF9682_00706 [Streptococcus intermedius
F0395]
Length = 554
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 163/292 (55%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQKVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I D+ + + +++++
Sbjct: 62 NCPHRKNGEPCNECYICQAITEGSLEDVIEIDAASNNGVDEIRDIRNKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
I+ ++WI +E I + DA+++IA R++G +RDA L+Q L Q ++ + +E+
Sbjct: 182 IVAHIEWILQQENIGFENDAVQVIARRAEGGMRDALSILDQALSLTQDNQLKTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + L+ DT ++NL VI ++G +A +TD+L
Sbjct: 242 GSISLGALDAYVTAVLTHDTSAALENLDVIFDSG-------KNMARFVTDLL 286
>gi|301300447|ref|ZP_07206647.1| DNA polymerase III, subunit gamma and tau [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300851944|gb|EFK79628.1| DNA polymerase III, subunit gamma and tau [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 579
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 197/376 (52%), Gaps = 34/376 (9%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F DLVGQ +V + L NA++ + Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRPQRFMDLVGQEMVTKTLKNAIITHQTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ ++ +PC C +C + G ++ E+ N E I D+ D + + + Y++
Sbjct: 63 NCRFSKEGEPCNECETCKAITEGCLNDVIEIDAASNNGVEEIRDIRDKVKYAPTEADYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ +P IISR Q+F F ++
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRTQRFDFKRITAES 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRIS-----VPLVQ 642
I+ + +I ++ ++ D ALK+IA ++G +RDA LSLL Q IS V L
Sbjct: 183 ILQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDA------LSLLDQVISFGDNNVTLDN 236
Query: 643 ELV--GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA-- 698
L+ G ++ E L + L LS DT N +K ++ I+E G + L+ L D+L
Sbjct: 237 ALLVTGSVTQESLFNYLKFVLSKDTTNALKEIQQIVEQGKDANRLIEDLINYCRDLLLYQ 296
Query: 699 --------GSYDFTKDRHRRKFFRRQPLSKE-EMEKLRQALKTLSEAEKQLRMSNDK--- 746
G D+ + LS++ + ++ Q + L++ ++ +R S+ +
Sbjct: 297 QAPEMVSDGELGLLDDKFKE-------LSQQINVTQIYQIIDELNKQQENMRFSSHQSIY 349
Query: 747 LTWLTAALLQLAPDQQ 762
L LT L QL+ + +
Sbjct: 350 LEVLTVKLTQLSTNSE 365
>gi|340350868|ref|ZP_08673842.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella nigrescens
ATCC 33563]
gi|339607245|gb|EGQ12195.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella nigrescens
ATCC 33563]
Length = 594
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/355 (30%), Positives = 191/355 (53%), Gaps = 14/355 (3%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ-SL 472
KY P +F +VGQ + L NAV +++ Y+F GP G GKT+CARIFA+ +NC+
Sbjct: 10 KYRPMSFASVVGQQALTTTLMNAVKSKRLAHAYLFCGPRGVGKTTCARIFAKTINCEHPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVF 530
+Q + C C SC + + G+S NI E+ N E+I L++ T PP +Y++F+
Sbjct: 70 DQGEACNECESCRAFNEGRSYNIFELDAASNNSVENIKTLMEQ--TRIPPQIGRYKVFII 127
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M II
Sbjct: 128 DEVHMLSSSAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMSVPGIIN 187
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+ +A KEGI ++ AL +IA ++DG +RDA +Q + Q I+ V E + ++
Sbjct: 188 HLKAVAEKEGIAYEEAALNVIAEKADGGMRDALSIFDQAASFSQGNITYRKVIEDLNVLD 247
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS------YDF 703
+ +++DLA+ + L ++ G + L++ LA+ + ++L
Sbjct: 248 ADNYFNIMDLAVENKVPEIMVLLNNVINKGFDGGNLINGLASHVRNVLMAKDPQTLPLLE 307
Query: 704 TKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
T D R+++ RQ +K + L +AL+ ++ + + R S++K + L+Q+A
Sbjct: 308 TSDEQRQRY--RQQAAKCPTQFLYKALEIMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|260102437|ref|ZP_05752674.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
gi|260083757|gb|EEW67877.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
Length = 595
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/336 (31%), Positives = 180/336 (53%), Gaps = 16/336 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF ++GQ + L NA+ R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDSVIGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +CI+ D+G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECANCIAADKGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKDD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ +++I +E I+ + AL +IA +DG +RDA L+Q LS + ++ E+ G
Sbjct: 183 LEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYQDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD----ILAG--- 699
+ E + +L L + + +K + + G ++ +L + T I AG
Sbjct: 243 FAAKENIEKILLALLEQNPESALKLAQTELTQGASSKNILDELIDMATKSLMLIKAGDDR 302
Query: 700 -----SYDF---TKDRHRRKFFRRQPLSKEEMEKLR 727
S DF KD + F+R L+ + + LR
Sbjct: 303 QGTFLSEDFVQKVKDIPTKIFYRLITLANKALNDLR 338
>gi|422344456|ref|ZP_16425382.1| hypothetical protein HMPREF9432_01442 [Selenomonas noxia F0398]
gi|355377367|gb|EHG24592.1| hypothetical protein HMPREF9432_01442 [Selenomonas noxia F0398]
Length = 611
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/372 (29%), Positives = 191/372 (51%), Gaps = 5/372 (1%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P +F DLVGQ +++ LS AV + Y+F GP GTGKTS A+I ARALNC
Sbjct: 6 LYRRWRPESFADLVGQEHISRTLSRAVASGQTSHAYLFTGPRGTGKTSTAKILARALNCA 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
PCG C SC S G S ++ E+ N + I DL +++ + Y+I++
Sbjct: 66 EGPTLTPCGVCESCRSISDGSSMDVFEIDAASNRGIDEIRDLRESVKFAPTAGHYKIYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P RV+FIL ++ +P I SRCQ++ F ++ +I
Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPERVLFILATTEPHKVPATIQSRCQRYDFHRITVTEIRD 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L ++ + GI ++DAL LIA ++DG +RDA L+Q + L + ++ VQE +GL+
Sbjct: 186 RLLYVCRESGIAAEEDALGLIALQADGGMRDALSILDQCTALAEGPLTTERVQEALGLVG 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYDFTK 705
+ + + D + L +++ G E ++ +LA ++ G+ +
Sbjct: 246 HAWIEKMAMQIAACDAAGLIAQLGELLQNGSELKQILGELAQYFRSLMIVGVGGTVSAAE 305
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVL 765
++ R+ + EK+ L+TL+E ++LR S + + L
Sbjct: 306 FCAEQEDVLREEAKRFTQEKIMTILRTLNETMQELRFSPQPRIAVETMFIALCRAADAPA 365
Query: 766 PSSSADTSFSHS 777
P ++ T+ S+S
Sbjct: 366 PQTAEQTAASNS 377
>gi|418030487|ref|ZP_12668982.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
bulgaricus CNCM I-1632]
gi|354687209|gb|EHE87313.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
bulgaricus CNCM I-1632]
Length = 590
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/339 (29%), Positives = 185/339 (54%), Gaps = 11/339 (3%)
Query: 423 LVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCN 482
+VGQ + L N+++R KV ++F GP GTGKTSCA+IFA+ALNC +L++ +PC C+
Sbjct: 1 MVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCLNLQEGEPCNECS 60
Query: 483 SCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWS 542
+C++ D+G +I E+ N + I DLLD + + +Y++++ D+ LS +++
Sbjct: 61 NCLAADQGAMPDIIEMDAASNNSVDEIRDLLDKVHYAPTEGKYKVYIIDEVHMLSISAFN 120
Query: 543 AISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIE 602
A+ K ++ P VVFIL ++ L +P IISR Q++ F + + ++ +++I +EG+E
Sbjct: 121 ALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRFSNEAMVQRMEYILGQEGVE 180
Query: 603 IDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDEKLVDLLDLAL 661
+ ALK+IA +DG +RDA L+Q LS + E+ G + E++ LL L
Sbjct: 181 YEDKALKVIAQVADGGMRDALSILDQLLSFEKSSVRYEDALEVTGFAAQEQVEKLLLALL 240
Query: 662 SADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYDFTKDRHRRKFFRRQP 717
+ D+ + + ++ G +++++ ++ + G +F D ++ ++ P
Sbjct: 241 NGDSQMALDLAKSAIQDGASAQNILNEIISLTVQAMLFTKTGQGEFLTDDFAQEIAQQSP 300
Query: 718 LSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
++ Q + ++A LR +N + L L+Q
Sbjct: 301 ------DRFSQIIDQANDALGSLRFTNQQQIPLEVFLVQ 333
>gi|365853230|ref|ZP_09393518.1| DNA polymerase III, subunit gamma and tau [Lactobacillus
parafarraginis F0439]
gi|363712986|gb|EHL96646.1| DNA polymerase III, subunit gamma and tau [Lactobacillus
parafarraginis F0439]
Length = 599
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 194/369 (52%), Gaps = 33/369 (8%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F ++VGQ+++ Q L NA++ +++ Y+F GP GTGKTS A+IFA+A+
Sbjct: 12 YQALYRVWRPQRFDEIVGQSIITQTLKNAILTKQISHAYLFTGPRGTGKTSAAKIFAKAV 71
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC L+ +PC C +C + + G ++ E+ N E I D+ D + + + Y++
Sbjct: 72 NCHYLKDGEPCNECETCRAINEGSLSDVIEIDAASNNGVEEIRDIRDKVKYAPTKADYKV 131
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR QKF F +++ D
Sbjct: 132 YIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQKFDFKRIRPQD 191
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + +I ++ I+ D ALKLIA ++G +RDA L+Q +S +++ + G
Sbjct: 192 ILERMAYILKQKHIDYDDKALKLIAKAAEGGMRDALSILDQAMSYGDDQVTYENALLVTG 251
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+++E L ++ + DT + + ++ I++ G + + L + DIL
Sbjct: 252 SVTNELLTTYVEQVIQKDTKSALITIQKILDDGKDASRFVEDLTSYCQDIL--------- 302
Query: 707 RHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLP 766
+++ P E+ME L + +DK LT+ Q++ DQ Y +
Sbjct: 303 -----LYQQDPQIVEQME---------------LGVVDDKFKQLTS---QISDDQIYQMI 339
Query: 767 SSSADTSFS 775
+ D S S
Sbjct: 340 NELNDISNS 348
>gi|410458143|ref|ZP_11311906.1| DNA polymerase III subunits gamma and tau [Bacillus azotoformans
LMG 9581]
gi|409931771|gb|EKN68747.1| DNA polymerase III subunits gamma and tau [Bacillus azotoformans
LMG 9581]
Length = 568
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 193/360 (53%), Gaps = 5/360 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+TF D+VGQ + + L NA+++ K Y+F GP GTGKTS A+I A+A+
Sbjct: 3 YQALYRVWRPQTFHDVVGQEHITRTLQNALVQEKFSHAYLFSGPRGTGKTSAAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C++C G ++ E+ N E I D+ D + + +Y++
Sbjct: 63 NCERAPVSEPCNECDACRGITNGSISDVIEIDAASNNGVEEIRDIRDKVKYAPSAVRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F ++
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRCQRFEFKRIPPRA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ ++ I IE ++ AL LIA ++G +RDA L+Q +S G++++V V + G
Sbjct: 183 MVERMKEITDSNNIETEEQALPLIAKAAEGGMRDALSLLDQAISFSGEKVTVEDVLSITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
+S + LV+ L+ D V + + ++ G EP + L D+L A + +
Sbjct: 243 AVSQQFLVETAGNLLNRDVVEALHTVDKLLRLGKEPARFIEDLIFYFRDMLLYQTAPNLE 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
+R + ++ +++ + L+E++++++ +N +L AL+++ QQ
Sbjct: 303 GMMERAIVDDGFKTLTAETSPDQIYTIINGLNESQQEMKWTNHPKIFLELALVKICQQQQ 362
>gi|345020802|ref|ZP_08784415.1| DNA polymerase III gamma and tau subunits [Ornithinibacillus
scapharcae TW25]
Length = 561
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 204/378 (53%), Gaps = 14/378 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ + + L NA++++K Y+F GP GTGKTS A+IFA+ +
Sbjct: 3 YQALYRVWRPKNFGDVVGQTHITRTLQNAIVQQKFSHAYLFTGPRGTGKTSAAKIFAKTI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C+ G ++ E+ N + I ++ DN+ + Y++
Sbjct: 63 NCEHAPVKEPCNECAACLGIQDGSISDVIEIDAASNTSVDDIREIRDNVKYASSVVPYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ +S ++++A+ K ++ P+ VVFIL ++ +P IISRCQ+F F + +
Sbjct: 123 YIIDEVHMISVNAFNALLKTLEEPPKHVVFILATTEPHKIPLTIISRCQRFDFKPISNQA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ +Q I E + + K+AL +A ++G +RDA L+Q +S + + V + G
Sbjct: 183 IVDRMQTIVDAEEVSVSKEALDAVALAAEGGMRDALSILDQAISYSENSVELEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
+S L D++ D +T+K L +++ G +P + + + D+L A D
Sbjct: 243 GVSQRILTDIVSAMNQKDVQSTLKMLDQLIQNGKDPGRFVYDIIYFLRDLLLYKSAPDLD 302
Query: 703 FTKDRHR-RKFFRRQPLSKEEMEK-LRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760
+R + FR+ LS+E EK ++QA+ L++ +++++ SN+ ++ A++ +
Sbjct: 303 GILERAMIDEDFRK--LSEEVSEKWIQQAIMQLNQCQQEMKWSNNPKVFIEIAMITITNR 360
Query: 761 QQYVLPSSSADTSFSHSP 778
Q + DTS + SP
Sbjct: 361 HQ-----DAGDTSDTASP 373
>gi|408355382|ref|YP_006843913.1| DNA polymerase III subunit tau [Amphibacillus xylanus NBRC 15112]
gi|407726153|dbj|BAM46151.1| DNA polymerase III subunit tau [Amphibacillus xylanus NBRC 15112]
Length = 564
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/380 (30%), Positives = 201/380 (52%), Gaps = 28/380 (7%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+TF D+VGQ + + L NA+ + K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRPQTFNDVVGQVHITRTLQNAIYQNKFSHAYLFSGPRGTGKTSAAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NCQS +PCG C++CI G ++ E+ N E I D+ D + + Y++
Sbjct: 63 NCQSAPVKEPCGKCDACIGIQDGTISDVIEIDAASNNGVEQIRDIRDKVKYAPSVVDYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPQHVIFILATTEPHKIPLTIISRCQRFDFKRIGHSF 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRIS-----VPL-- 640
++ ++ I ++E I + +A IA ++G +RDA LSLL Q IS V L
Sbjct: 183 LVERMKQIMNEEKISVTDEAFHAIALAAEGGMRDA------LSLLDQAISYSQDVVELED 236
Query: 641 VQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS 700
V + G +S L++L+D D +K + + ++ G +P L+ L + D+L
Sbjct: 237 VLAITGSVSQSNLIELIDALYHQDAKTALKLVDLFIQEGKDPGRLVYDLIYFLRDLLI-- 294
Query: 701 YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKT---------LSEAEKQLRMSNDKLTWLT 751
Y T D + + + ++L+Q L + L++ +++++ +N ++
Sbjct: 295 YQDTTDSED---LLERAIVDQAFKELQQKLTSNWIQNSITELNQCQQEMKWTNTPKVFIE 351
Query: 752 AALLQLAPDQQYVLPSSSAD 771
+L++A DQQ SS D
Sbjct: 352 ITVLKIA-DQQAESKSSVLD 370
>gi|325956089|ref|YP_004286699.1| DNA polymerase III subunits gamma and tau [Lactobacillus
acidophilus 30SC]
gi|325332654|gb|ADZ06562.1| DNA polymerase III subunits gamma and tau [Lactobacillus
acidophilus 30SC]
Length = 602
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 138/222 (62%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF ++GQ + L NA++R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDSVIGQEAITDTLKNAIIRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +CI+ D+G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNKCANCIAADQGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ AD
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKAD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL 629
+ +++I +E I+ + A+ +IA +DG +RDA L+QL
Sbjct: 183 LEKRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSILDQL 224
>gi|169824209|ref|YP_001691820.1| DNA polymerase III subunits gamma and tau [Finegoldia magna ATCC
29328]
gi|167831014|dbj|BAG07930.1| DNA polymerase III subunits gamma and tau [Finegoldia magna ATCC
29328]
Length = 537
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 199/356 (55%), Gaps = 11/356 (3%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q + +KY P TF + GQ + L N + + + Y+F G GTGKTSCA+IFARA+N
Sbjct: 2 QAIYRKYRPDTFDKVYGQKHITDILKNQIETKNISHAYIFSGSRGTGKTSCAKIFARAIN 61
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYR 526
C L+ PC C +C S + +I E+ N + I +L D ++ PP+ +Y+
Sbjct: 62 CLDLQNGNPCNKCENCQSSLEESTLDIVEMDAASNRRIDDIRELRDKVIY--PPTKLKYK 119
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+++ D+ ++ + ++A+ K+++ P+ +VFIL ++ +D +P I+SRCQ++ F +
Sbjct: 120 VYIIDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMINSK 179
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELV 645
DI +++I + ++D DA++LIA+++DG++RDA L+Q LS+ + I+ + +++
Sbjct: 180 DISDNIKYILNDLNRKMDDDAIELIANKADGAMRDALSILDQVLSIEKENITKQDINDIL 239
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLA-LMSQLATVITDILAGSYDFT 704
G++ ++ + L++ + D + + NL I +P+ +M +L ++L
Sbjct: 240 GIVDNKGIFKLVNSIIKKDATDVLGNLYTISHN--KPVENVMDELLNHFRNLLLSKNGLE 297
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLS---EAEKQLRMSNDKLTWLTAALLQL 757
K R + ++ E+ RQ ++++S E +K+L+ ++++ L +++L
Sbjct: 298 KIRQNNTQYNDDYNAQSELITNRQIVESMSIIIEHQKKLKQADNQKALLEILVMRL 353
>gi|383753284|ref|YP_005432187.1| putative DNA polymerase III subunit gamma/tau [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381365336|dbj|BAL82164.1| putative DNA polymerase III subunit gamma/tau [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 572
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 202/377 (53%), Gaps = 22/377 (5%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P+TF DLVGQ +++ LSNA+ ++G Y+F GP GTGKTS A+I A+ALNC+
Sbjct: 6 LYRKWRPKTFADLVGQEHISRTLSNAINTGRIGHAYLFSGPRGTGKTSTAKILAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
P+PCG C +C + G S ++ E+ N + I DL + + + +Y++++
Sbjct: 66 QGPTPEPCGKCRACQKINDGSSMDVFEIDAASNRGIDEIRDLRETVKFAPVDGRYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P VVFIL ++ +P I SRCQ++ F ++ +I
Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPAHVVFILATTEAHKVPPTIQSRCQRYDFKRITVEEIRG 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+ + ++ G++++ +AL +IA ++DG LRDA L+Q S L ++ V++ +GLI
Sbjct: 186 RLETVTAEMGLQVEPEALDMIAIQADGGLRDALSLLDQCSALADGELTAARVRQTLGLIG 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH- 708
E + L + + + + L ++ G E ++++L+ + ++ T ++
Sbjct: 246 HESIYRLTEAIYAHKSQTALAVLAELLRDGKELKQVLTELSLHLRSLMIYQSTGTLEQMD 305
Query: 709 -----------RRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ KFF S EE+ + +K L EA +L+ S + ALL L
Sbjct: 306 LYAEPDEILQTQGKFF-----SAEEIMAM---IKKLHEALAELKWSPQPRITVEVALLAL 357
Query: 758 A-PDQQYVLPSSSADTS 773
P V+P +A T+
Sbjct: 358 CNPADSAVMPVQAAATA 374
>gi|374855260|dbj|BAL58121.1| DNA polymerase III subunit gamma/tau [uncultured Acidobacteria
bacterium]
Length = 550
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 116/367 (31%), Positives = 187/367 (50%), Gaps = 23/367 (6%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
HQ + +K+ P+ F DLVGQ +A+ L NA+ R+ Y+F GP G GKT+ AR+FA+AL
Sbjct: 2 HQVIARKWRPQRFEDLVGQEAIARTLQNALRYRRWHHAYIFAGPRGVGKTTTARLFAKAL 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILD-LLDNMVTSRPPSQYR 526
NC P+PC C C +G + ++ E+ + +++ +LD + +YR
Sbjct: 62 NCVQGPTPEPCNECPPCREIVQGNALDVLEIDAASHTGVDNVRQVILDTLALGPARDRYR 121
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
IF+ D+C LS +++A+ K ++ P V+F++ ++ L +P I+SRCQ F F + +
Sbjct: 122 IFIIDECHQLSTSAFNALLKTLEEPPPHVLFLMATTELHKVPATILSRCQIFEFRLIPEG 181
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ---LSLLGQRISVPLVQE 643
I L+ IA EGI I AL+ IA GSLRDA+ LEQ + G+ IS +V
Sbjct: 182 KIAERLRRIADAEGIAISDSALRRIARAGQGSLRDAQSLLEQAVSFAGPGEPISDEVVTA 241
Query: 644 LVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDF 703
+GLI E L+ + D ++ ++ + E G + L ++L
Sbjct: 242 ALGLIGTETLLLAAEAIADRDGARLLRLVQELSERGYDLRHFCRDLMAHFRNLLVAKV-I 300
Query: 704 TKDRHRRKFFRRQPLSKEEM------------EKLRQALKTLSEAEKQLRMSNDKLTWLT 751
+DR PLS+ EM E++ +A + L+E E+ LR +++ L
Sbjct: 301 GRDRE------LLPLSEGEMDQLLAQARRFHEEEIVRAFRALTELEQNLRYASEPRFSLE 354
Query: 752 AALLQLA 758
LL+LA
Sbjct: 355 VGLLRLA 361
>gi|315037610|ref|YP_004031178.1| DNA polymerase III, subunit gamma/tau [Lactobacillus amylovorus GRL
1112]
gi|312275743|gb|ADQ58383.1| DNA polymerase III, gamma/tau subunit [Lactobacillus amylovorus GRL
1112]
Length = 602
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 138/222 (62%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF ++GQ + L NA++R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDSVIGQEAITDTLKNAIIRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +CI+ D+G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNKCANCIAADQGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ AD
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKAD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL 629
+ +++I +E I+ + A+ +IA +DG +RDA L+QL
Sbjct: 183 LEKRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSILDQL 224
>gi|336053584|ref|YP_004561871.1| DNA polymerase III [Lactobacillus kefiranofaciens ZW3]
gi|333956961|gb|AEG39769.1| DNA polymerase III [Lactobacillus kefiranofaciens ZW3]
Length = 597
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 172/302 (56%), Gaps = 3/302 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF ++GQ + L NA+ R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +CI+ D+G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNKCANCIAADKGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ +D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEYVVFILATTELQKVPATIISRTQRYNFKRISKSD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ +++I +E I+ + AL +IA +DG +RDA L+Q LS + ++ ++ G
Sbjct: 183 LEKRMKYILEQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYNDALQITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD--ILAGSYDFT 704
+ E + +L L+ D + +K + ++ G ++ +L + T +L + D T
Sbjct: 243 FAARENIEQILLALLNQDAGSALKLAQKELDQGASSKNILDELIDLATKSLMLIKTGDET 302
Query: 705 KD 706
KD
Sbjct: 303 KD 304
>gi|385816966|ref|YP_005853356.1| DNA polymerase III subunits gamma and tau [Lactobacillus amylovorus
GRL1118]
gi|327182904|gb|AEA31351.1| DNA polymerase III subunits gamma and tau [Lactobacillus amylovorus
GRL1118]
Length = 602
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 138/222 (62%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF ++GQ + L NA++R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDSVIGQEAITDTLKNAIIRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +CI+ D+G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNKCANCIAADQGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ AD
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKAD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL 629
+ +++I +E I+ + A+ +IA +DG +RDA L+QL
Sbjct: 183 LEKRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSILDQL 224
>gi|309800115|ref|ZP_07694307.1| DNA polymerase III gamma/tau subunit [Streptococcus infantis
SK1302]
gi|308116256|gb|EFO53740.1| DNA polymerase III gamma/tau subunit [Streptococcus infantis
SK1302]
Length = 554
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 162/292 (55%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEIVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + E +PC C C + G ++ E+ N + I D+ D + +QY++
Sbjct: 62 NCPNQEGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIRDIRDKSTYAPSIAQYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTPNVVFILATTELHKIPATILSRVQRFEFKSIRTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELV 645
I + I KEGI+ + +A+++IA R++G +RDA L+Q L Q R++ + +E+
Sbjct: 182 IRDHIFHILEKEGIDYESEAVEIIARRAEGGMRDALSILDQALSLTQDARLTTAVSEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + + D ++NL +I + G ++ L + DIL
Sbjct: 242 GTISLSALDNYVAALAQKDVTRALENLNLIFDNGKSMTRFVTDLLQYLRDIL 293
>gi|323340130|ref|ZP_08080394.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus ruminis
ATCC 25644]
gi|417972707|ref|ZP_12613597.1| DNA polymerase III subunits gamma and tau [Lactobacillus ruminis
ATCC 25644]
gi|323092321|gb|EFZ34929.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus ruminis
ATCC 25644]
gi|346330918|gb|EGX99147.1| DNA polymerase III subunits gamma and tau [Lactobacillus ruminis
ATCC 25644]
Length = 577
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 189/363 (52%), Gaps = 19/363 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+TF DLVGQ+++ + L NA+ ++ Y+F GP GTGKTSCA++FA+AL
Sbjct: 3 YQALYRVWRPQTFEDLVGQDMITKTLKNALATKQTTHAYLFAGPRGTGKTSCAKLFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + PC C +C + G+ ++ E+ N E I D+ D + + + Y++
Sbjct: 63 NCPNQVNGDPCNECETCKAITAGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTQADYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ +P IISR Q+F F ++
Sbjct: 123 YIIDEVHMLSTSAFNALLKTLEEPPANVVFILATTDPHKIPATIISRTQRFDFKRITSGA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ +++I ++ E D+ AL +IA ++G +RDA L+Q LS ++++ + G
Sbjct: 183 ILERMEYILKQKQFEYDEQALNVIARAAEGGMRDALSILDQVLSFGDNKVTLDNALLVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--------- 697
++ E L+ L + +TV ++ + I++ G + L+ L D+L
Sbjct: 243 SVTRENLIKYLSQVQNHETVAGLQTIHAILDEGKDSKRLLEDLINCCRDLLLYKQAPEML 302
Query: 698 --AGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALL 755
GS D + + P E L + + TL+E ++ +R S + +L +
Sbjct: 303 EQTGSV-MIDDEFKSMAEKSNP------ETLYRYIDTLNEQQENMRYSMHQSVYLEVLTV 355
Query: 756 QLA 758
+LA
Sbjct: 356 KLA 358
>gi|339448592|ref|ZP_08652148.1| DNA polymerase III subunits gamma and tau [Lactobacillus
fructivorans KCTC 3543]
Length = 592
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 195/370 (52%), Gaps = 33/370 (8%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F ++VGQ ++ Q L NA++ ++ Y+F GP GTGKTS A+I A+A+
Sbjct: 3 YQALYRTWRPQRFDEIVGQPVITQTLKNALITNQISHAYLFTGPRGTGKTSAAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +C++ ++G ++ E+ N E I ++ D + +Y++
Sbjct: 63 NCPNLKDGEPCNECATCLAINKGAFNDVIEIDAASNNGVEEIRNIRDKAKYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR Q+F F ++K +D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPEHVIFILATTEPQKIPATIISRTQRFDFKRIKASD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ +++I S++ I+ D ALK+IA ++G +RDA L+Q LS +++ + G
Sbjct: 183 ILKRMEYILSEKNIDYDDKALKVIAKSAEGGMRDALSILDQALSYSNDKVTYESALSVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ +KL ++ ++D +K ++ I++ G + + L +IL
Sbjct: 243 SVTRDKLQSYIEAVFNSDVQTGLKMVQEILDDGKDANQFIEDLVDYCQNIL--------- 293
Query: 707 RHRRKFFRRQP--LSKEEM----------------EKLRQALKTLSEAEKQLRMSNDKLT 748
+ + P + K E+ E + Q ++ +S+ + Q+R S+
Sbjct: 294 -----LYHQDPEMVQKSELGLLGSNFKKIAGEIGSELIYQYVEIMSDVQNQMRYSSHPDV 348
Query: 749 WLTAALLQLA 758
+L ++LA
Sbjct: 349 YLDILTVKLA 358
>gi|402309988|ref|ZP_10828957.1| DNA polymerase III, subunit gamma and tau [Eubacterium sp. AS15]
gi|400370051|gb|EJP23047.1| DNA polymerase III, subunit gamma and tau [Eubacterium sp. AS15]
Length = 538
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 161/288 (55%), Gaps = 6/288 (2%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P F +++GQ+ V L N + K+ YVF G GTGKTS A++FA++LNCQ
Sbjct: 5 LYRKYRPDNFENIIGQSQVTDVLKNQIKENKISHAYVFSGTRGTGKTSTAKVFAKSLNCQ 64
Query: 471 SLEQPK-PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFV 529
+ Q PC C SC + + E+ N ++I L DN++ +Y++++
Sbjct: 65 NYSQESAPCNHCESC----KNDYVDTIEIDAASNNSVDNIRALKDNIIYRPSFGRYKVYI 120
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ LS +++A+ K ++ P V+FIL ++ ++ +P I+SRCQKF F K+ DI
Sbjct: 121 IDEVHMLSIGAFNALLKTLEEPPEHVIFILATTEINKIPATILSRCQKFEFKKVSVEDIK 180
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLIS 649
L++I E I D A+ IA+ SDG LRDA TL+Q++ LG RIS+ + + G+ S
Sbjct: 181 ARLKFIVENENIPYDVYAIDYIATMSDGGLRDAISTLDQVASLG-RISMENLDFVTGMTS 239
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
K+ + L + DT ++K + + V+ L SQ+ + + DI+
Sbjct: 240 IVKIDEYLKSVFTKDTFASLKTVNEMTADNVDIKKLPSQIISRLLDII 287
>gi|335998168|ref|ZP_08564080.1| DNA polymerase III subunit gamma/tau [Lactobacillus ruminis
SPM0211]
gi|335348682|gb|EGM50183.1| DNA polymerase III subunit gamma/tau [Lactobacillus ruminis
SPM0211]
Length = 577
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 189/363 (52%), Gaps = 19/363 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+TF DLVGQ+++ + L NA+ ++ Y+F GP GTGKTSCA++FA+AL
Sbjct: 3 YQALYRVWRPQTFEDLVGQDMITKTLKNALATKQTTHAYLFAGPRGTGKTSCAKLFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + PC C +C + G+ ++ E+ N E I D+ D + + + Y++
Sbjct: 63 NCPNQVNGDPCNECETCKAITAGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTQADYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ +P IISR Q+F F ++
Sbjct: 123 YIIDEVHMLSTSAFNALLKTLEEPPANVVFILATTDPHKIPATIISRTQRFDFKRITSGA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ +++I ++ E D+ AL +IA ++G +RDA L+Q LS ++++ + G
Sbjct: 183 ILERMEYILKQKQFEYDEQALNVIARAAEGGMRDALSILDQVLSFGDNKVTLDNALLVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--------- 697
++ E L+ L + +TV ++ + I++ G + L+ L D+L
Sbjct: 243 SVTRENLIKYLSQVQNHETVAGLQTIHAILDEGKDSKRLLEDLINCCRDLLLYKQAPEML 302
Query: 698 --AGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALL 755
GS D + + P E L + + TL+E ++ +R S + +L +
Sbjct: 303 EQTGSV-MIDDEFKSMAEKSNP------ETLYRYIDTLNEQQENMRYSMHQSVYLEVLTV 355
Query: 756 QLA 758
+LA
Sbjct: 356 KLA 358
>gi|312867346|ref|ZP_07727555.1| DNA polymerase III, subunit gamma and tau [Streptococcus
parasanguinis F0405]
gi|311097047|gb|EFQ55282.1| DNA polymerase III, subunit gamma and tau [Streptococcus
parasanguinis F0405]
Length = 558
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 163/292 (55%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVARTLRQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C S G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQVNGEPCNDCYICESITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKLPD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
II+ L+ I + EGI + DA+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IIHHLESILATEGIVYEADAVQIIARRAEGGMRDALSILDQALSLTAGSELTTAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + L+ D + L +I + G +A +TD+L
Sbjct: 242 GSISLAALDQYVAAILAHDATAALDQLAIIFDNG-------KNMARFVTDLL 286
>gi|187251871|ref|YP_001876353.1| DNA polymerase III subunits gamma and tau [Elusimicrobium minutum
Pei191]
gi|186972031|gb|ACC99016.1| DNA polymerase III, subunits gamma and tau [Elusimicrobium minutum
Pei191]
Length = 627
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 166/300 (55%), Gaps = 13/300 (4%)
Query: 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466
R+ +L+ KY P+TF D+VGQ +++ L+NA+ +VG Y+FYGP G GKT+ ARIFA+A
Sbjct: 10 RYISLSNKYRPQTFEDVVGQETISKTLTNAIKLGRVGHAYLFYGPRGCGKTTSARIFAKA 69
Query: 467 LNCQ---SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILD-LLDNMVTSRPP 522
LNC + PCG C CI G ++ E+ N + I + ++D + +
Sbjct: 70 LNCTGNGNKPAASPCGKCPQCIEIANGSDMDVLELDAASNTQVDKIREAIIDTVALAATR 129
Query: 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPK 582
+++IF+ D+ LS S++A+ K ++ P VVFIL ++ +P I SRCQ F F
Sbjct: 130 DRFKIFILDEVHMLSDSSFNALLKTIEEPPAHVVFILATTEKHKVPATISSRCQTFRFRP 189
Query: 583 MKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLV 641
+ DI L +A KE I I+ A+++IAS++ G+LRDA L++ ++ I+ LV
Sbjct: 190 ITQEDISAHLTALAQKENINIEPKAVQIIASQAGGALRDALTILDRAIAYSDGSITEELV 249
Query: 642 QELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMET----GVEPLALMSQLATVITDIL 697
+++GL+ + D+L A+ A + + ET G +PL+ + L + D+
Sbjct: 250 IDMLGLMPE----DILKAAVKAVLKKNYNEMHTVFETIQMEGFDPLSFLRDLKNALGDLF 305
>gi|331701734|ref|YP_004398693.1| DNA polymerase III subunits gamma and tau [Lactobacillus buchneri
NRRL B-30929]
gi|329129077|gb|AEB73630.1| DNA polymerase III, subunits gamma and tau [Lactobacillus buchneri
NRRL B-30929]
Length = 600
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/330 (30%), Positives = 179/330 (54%), Gaps = 17/330 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F ++VGQ+++ + L NA++ ++ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRPQRFDEIVGQSIITRTLKNALITKQTSHAYLFTGPRGTGKTSAAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC L+ +PC C +C + + G ++ E+ N E I D+ D + + Y++
Sbjct: 63 NCHYLKDGEPCNQCETCKAINEGSLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR QKF F ++K D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQKFDFKRIKPQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ +++I ++ +E D ALKLIA ++G +RDA L+Q +S +I+ + G
Sbjct: 183 ILERMKYILDQKKVEYDDKALKLIAKAAEGGMRDALSILDQAMSYGDNKITYENALLVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+++E L + ++ DT + + ++ I++ G + + L + DIL
Sbjct: 243 SVTNELLTTYMQQVVNKDTKSALITIQKILDEGKDASRFIEDLTSYCQDIL--------- 293
Query: 707 RHRRKFFRRQPLSKEEMEK--LRQALKTLS 734
+++ P EEME + KTLS
Sbjct: 294 -----LYQQDPGIVEEMELGIIDDQFKTLS 318
>gi|383811331|ref|ZP_09966800.1| DNA polymerase III, subunit gamma and tau [Prevotella sp. oral
taxon 306 str. F0472]
gi|383356081|gb|EID33596.1| DNA polymerase III, subunit gamma and tau [Prevotella sp. oral
taxon 306 str. F0472]
Length = 604
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 190/354 (53%), Gaps = 12/354 (3%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS-L 472
KY P +F +VGQ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC++
Sbjct: 10 KYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCENPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVF 530
+ + C C SC + G+S NI E+ N E+I L++ T PP +Y++F+
Sbjct: 70 NEGEACNECESCKAFAEGRSYNIFELDAASNNSVENIKTLMEQ--TRIPPQVGRYKVFII 127
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M +II
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPNIIN 187
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+ +A KE I+ D+ AL +IA ++DG +RDA +Q + Q I+ V E + ++
Sbjct: 188 HLKAVAEKENIQYDEQALNIIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNVLD 247
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT----- 704
++ ++++LAL + + L ++ G + L++ LA+ + ++L T
Sbjct: 248 EDNYFNIINLALENKVSDIMVLLNNVINKGFDGGHLINGLASHVRNVLMAKDVQTLPLLE 307
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+RK ++ Q K L ALK +++ + + R S++K + L+Q+A
Sbjct: 308 VSEQQRKRYQEQA-QKCPTLFLYNALKIMNQCDVEYRQSSNKRLLVELTLIQVA 360
>gi|419799295|ref|ZP_14324652.1| DNA polymerase III, subunit gamma and tau [Streptococcus
parasanguinis F0449]
gi|385698327|gb|EIG28696.1| DNA polymerase III, subunit gamma and tau [Streptococcus
parasanguinis F0449]
Length = 558
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 163/292 (55%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVARTLRQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C S G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQVNGEPCNDCYICESITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKLPD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I++ L+ I + EGI + DA+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IVHHLESILATEGIAYEADAVQIIARRAEGGMRDALSILDQALSLTAGSELTTAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + L+ D + L +I + G +A +TD+L
Sbjct: 242 GSISLAALDQYVAAILAHDATAALDQLTIIFDNG-------KNMARFVTDLL 286
>gi|374855143|dbj|BAL58007.1| DNA polymerase III subunit gamma/tau [uncultured Chloroflexi
bacterium]
Length = 528
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 173/292 (59%), Gaps = 4/292 (1%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q L +K+ +TF ++VGQ V Q L NA+ +V Y+F GP GTGKT+ AR+ A+A+N
Sbjct: 8 QALYRKWRSQTFAEVVGQQHVTQTLVNALKLDRVAHAYLFAGPRGTGKTTTARLLAKAVN 67
Query: 469 CQSLEQP-KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP-PSQYR 526
CQ+ +Q +PC C C++ + G+ ++ E+ N + I DL + V RP ++ +
Sbjct: 68 CQAEDQAARPCNRCEICLAVNEGRLLDLIEIDAASNTGVDDIRDLREK-VNFRPGQARRK 126
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
++ D+ LS +++A+ K ++ P V+F+L ++ + +P I SRCQ+F F ++K A
Sbjct: 127 FYIIDEVHMLSNSAFNALLKTLEEPPEHVIFVLATTEPEKIPATITSRCQRFDFRRIKLA 186
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELV 645
DI+ L +I +EG++ + AL+ IA ++ GS+RDA L+QL+ G + I++ LVQ ++
Sbjct: 187 DIVNRLSYIVEQEGLKAEPAALEYIARQASGSMRDAISLLDQLTAYGTETITLELVQTVL 246
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G ++ + ++ L+D + + + + I+ GV+P L +L + ++
Sbjct: 247 GAVTSQAVMALVDALIERNVAAGLDLINQIISEGVDPRQLARELVEYLRSVM 298
>gi|422701044|ref|ZP_16758885.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX1342]
gi|315170423|gb|EFU14440.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX1342]
Length = 586
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 207/391 (52%), Gaps = 12/391 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ + Q L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C +C++ G+ ++ E+ N E I D+ D + ++Y++
Sbjct: 63 NCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I + ++ ++ AL +I ++G +RDA L+Q +S +++++ ++ G
Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ E + + ++ D ++ L I+ G E + L D+L A
Sbjct: 243 SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPKLL 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA---- 758
K + F ++ ++ EK+ Q ++ LS+ + ++R +N+ +L A ++LA
Sbjct: 303 AEKAGTLTEAF-KELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKTVQ 361
Query: 759 PDQQYVLPSSSADTSFSHSP--LDLENAGGR 787
P++ +++ D S +P DL+N G+
Sbjct: 362 PNKHNTPETANQDGSAERNPELADLQNQIGQ 392
>gi|340346161|ref|ZP_08669288.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella dentalis DSM
3688]
gi|433651507|ref|YP_007277886.1| DNA polymerase III, subunit gamma/tau [Prevotella dentalis DSM
3688]
gi|339612390|gb|EGQ17201.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella dentalis DSM
3688]
gi|433302040|gb|AGB27856.1| DNA polymerase III, subunit gamma/tau [Prevotella dentalis DSM
3688]
Length = 616
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 190/355 (53%), Gaps = 12/355 (3%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P TF +VGQ + L NAV K+ Y+F GP G GKT+CARIFA+ +NC
Sbjct: 9 RKYRPMTFSSVVGQEALTTTLKNAVRSGKLAHAYLFCGPRGVGKTTCARIFAKTINC--- 65
Query: 473 EQP----KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
E P + C C SC S + G+S NI E+ N E+I L+D + +Y++F
Sbjct: 66 EHPTTDGEACDTCESCRSFNEGRSMNIFELDAASNNSVENIKTLMDQTLIPPQTGRYKVF 125
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ LS +++A K ++ P V+F+L ++ + I+SRCQ + F +M +I
Sbjct: 126 IIDEVHMLSTAAFNAFLKTLEEPPHHVIFVLATTEKHKILPTILSRCQIYDFERMAVPEI 185
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGL 647
I L+ +A KEGI +++AL +IA ++DG +RDA +Q++ Q I+ V E + +
Sbjct: 186 IGHLKMVADKEGIGYEEEALSVIAEKADGGMRDALSIFDQVASFCQGNITYQKVLEDLNV 245
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYDF 703
+ + ++DLAL+ + + L ++ G + L++ LA+ + ++L A +
Sbjct: 246 LDADNYFRIIDLALANQVSDIMLLLDGLVAKGFDAGHLINGLASHVRNVLMARDAQTLPL 305
Query: 704 TKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ +++ ++ K + L +AL+ L+E + R S++K L+++A
Sbjct: 306 LEASQQQRLRYQEQAKKCPIPFLYKALRILNECDVNYRQSSNKRLLAELTLIRVA 360
>gi|171920556|ref|ZP_02931825.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 13 str. ATCC 33698]
gi|171903253|gb|EDT49542.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 13 str. ATCC 33698]
Length = 603
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 174/316 (55%), Gaps = 7/316 (2%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P F+D++GQNL+ QAL NA + K Y+F GP G GKTS ARIFA ++NC
Sbjct: 6 LYRKYRPHKFKDVIGQNLIKQALINANLNNKTTHAYIFSGPRGIGKTSIARIFAASINCL 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
CG C+ C S +S ++ E+ N + + ++ DN+ +Y++++
Sbjct: 66 KPNNGDCCGECSVCQSIINEQSVDLIELDAASNNGVDQMRNITDNINYLPTLFKYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +W+A+ K V+ P+ V+FI ++ +P IISRCQ++ F ++ ++++
Sbjct: 126 DEAHMLSTSAWNALLKTVEEPPQHVIFIFATTEYQKIPLTIISRCQRYDFNRLNNSELQE 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
+ +A KE I+I+++A+ + +DG+ RD L+QL + I + L+ + GL+ +
Sbjct: 186 LIDLVAKKEDIKINENAINKLIQLADGAGRDCLSILDQLVTNQKVIDIDLINKTFGLVDN 245
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRR 710
K+++L++L D + K + + + G+ A +Q+ ++ D L Y T D
Sbjct: 246 SKVINLIELIQKNDLLELRKFIYELYDYGINLEAFCAQIINILIDYLV--YQKTNDETNL 303
Query: 711 KFFRRQPLSKEEMEKL 726
K +S +E++K+
Sbjct: 304 K-----KISIDELKKI 314
>gi|300726477|ref|ZP_07059923.1| DNA polymerase III, gamma and tau subunit [Prevotella bryantii B14]
gi|299776205|gb|EFI72769.1| DNA polymerase III, gamma and tau subunit [Prevotella bryantii B14]
Length = 614
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 114/358 (31%), Positives = 188/358 (52%), Gaps = 20/358 (5%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS-L 472
KY P TF +VGQ+ + L NAV +K+ Y+F GP G GKT+CARIFA+ +NC++
Sbjct: 10 KYRPMTFASVVGQSALTTTLKNAVKSKKLAHAYLFCGPRGVGKTTCARIFAKVINCENPR 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVF 530
E + C C SC + + G+S NI E+ N E+I L++ T PP +Y++F+
Sbjct: 70 EDGEACNECESCKAFNEGRSYNIFELDAASNNSVENIKTLMEQ--TRIPPQVGKYKVFII 127
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A K ++ P V+F+L ++ + I+SRCQ + F +M + I
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFVLATTEKHKILPTILSRCQIYDFERMTVPNTIA 187
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+ IA KEGI + AL++IA ++DG +RDA +Q++ Q I+ V + ++
Sbjct: 188 HLKQIADKEGITYEDAALEVIAEKADGGMRDALSIFDQVASYSQGNITYEKVIADLNVLD 247
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDF------ 703
L DLAL + + L I+E G + L+S LA I +++ +
Sbjct: 248 SNNYFKLTDLALENKVSDAMLLLNSILEKGFDGSHLISGLAQHIRNVMMAKDEVTLPLLE 307
Query: 704 TKDRHRRKF---FRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
T ++ + KF +R PL L +AL +++ + R S+ K + L+Q+A
Sbjct: 308 TSEQQKVKFKEQAKRCPLP-----FLYKALDLMNQCDIHYRESSSKRLLVELTLIQIA 360
>gi|312951953|ref|ZP_07770841.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0102]
gi|310630142|gb|EFQ13425.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0102]
Length = 586
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 207/391 (52%), Gaps = 12/391 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ + Q L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C +C++ G+ ++ E+ N E I D+ D + ++Y++
Sbjct: 63 NCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I + ++ ++ AL +I ++G +RDA L+Q +S +++++ ++ G
Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ E + + ++ D ++ L I+ G E + L D+L A
Sbjct: 243 SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPKLL 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA---- 758
K + F ++ ++ EK+ Q ++ LS+ + ++R +N+ +L A ++LA
Sbjct: 303 AEKAGTLTEAF-KELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKTVQ 361
Query: 759 PDQQYVLPSSSADTSFSHSP--LDLENAGGR 787
P++ +++ D S +P DL+N G+
Sbjct: 362 PNKHNTPETANQDGSAEGNPELADLQNQIGQ 392
>gi|224541626|ref|ZP_03682165.1| hypothetical protein CATMIT_00797 [Catenibacterium mitsuokai DSM
15897]
gi|224525464|gb|EEF94569.1| DNA polymerase III, subunit gamma and tau [Catenibacterium
mitsuokai DSM 15897]
Length = 600
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 172/300 (57%), Gaps = 5/300 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+++L + Y P+TF+D+ GQ + L +A+ +K+ Y+F GP GTGKT+ A++ A+A+
Sbjct: 5 YKSLYRTYRPQTFKDVAGQEAIITTLKHAIDEKKIAHAYLFCGPRGTGKTTVAKLLAKAV 64
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC PKPCG C +C + G ++ E+ N E + L+D + + QY++
Sbjct: 65 NCTG--NPKPCGECENCKQIENGTHPDVIEIDAASNNGVEEVRSLIDKVKYAPTQGQYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ +SP +++A+ K ++ P V+FIL ++ + IISRCQ+F F ++ D +
Sbjct: 123 YIIDEVHMMSPGAFNALLKTLEEPPAHVIFILATTEPHKILPTIISRCQRFDFTRLTDQE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +Q++ +EG D +L+LIA ++G +RDA LEQ L+ +S+ + + G
Sbjct: 183 MVQRMQYVLKEEGKTYDDGSLELIARLANGGMRDALSILEQCLAYNDDHLSINDIHTIYG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++S + +LL + LS + ++K L + ++G++ L L ++ DI+ Y TKD
Sbjct: 243 IVSMDDKTNLLKVLLSKNMSESLKILDKMDKSGIDIKRLTFDLIDILKDIVV--YRNTKD 300
>gi|229544838|ref|ZP_04433563.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
TX1322]
gi|256854074|ref|ZP_05559439.1| DNA polymerase III [Enterococcus faecalis T8]
gi|422684790|ref|ZP_16743015.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX4000]
gi|229310006|gb|EEN75993.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
TX1322]
gi|256711017|gb|EEU26060.1| DNA polymerase III [Enterococcus faecalis T8]
gi|315030401|gb|EFT42333.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX4000]
Length = 586
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 207/391 (52%), Gaps = 12/391 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ + Q L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C +C++ G+ ++ E+ N E I D+ D + ++Y++
Sbjct: 63 NCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I + ++ ++ AL +I ++G +RDA L+Q +S +++++ ++ G
Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ E + + ++ D ++ L I+ G E + L D+L A
Sbjct: 243 SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPKLL 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA---- 758
K + F ++ ++ EK+ Q ++ LS+ + ++R +N+ +L A ++LA
Sbjct: 303 AEKAGTLTEAF-KELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKTVQ 361
Query: 759 PDQQYVLPSSSADTSFSHSP--LDLENAGGR 787
P++ +++ D S +P DL+N G+
Sbjct: 362 PNKHNTPETANQDGSAEGNPELADLQNQIGQ 392
>gi|87307573|ref|ZP_01089717.1| DNA polymerase III gamma and tau subunits [Blastopirellula marina
DSM 3645]
gi|87289743|gb|EAQ81633.1| DNA polymerase III gamma and tau subunits [Blastopirellula marina
DSM 3645]
Length = 618
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 168/295 (56%), Gaps = 3/295 (1%)
Query: 405 NGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFA 464
N ++ + ++Y P++F +LVGQ+ VAQAL NA+ R +VG Y+F G G GKTS ARI A
Sbjct: 15 NDQYVVVARRYRPQSFEELVGQSQVAQALKNAIERGRVGHAYLFTGARGVGKTSSARILA 74
Query: 465 RALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP-S 523
+ALNCQ PC C+ C S G+ ++ E+ N E I L N V RP +
Sbjct: 75 KALNCQRGPSATPCNECDICRSVTVGEDVDVLEIDGASNRGIEEIRQLRSN-VNIRPSRA 133
Query: 524 QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKM 583
+++I++ D+ + ++++A+ K ++ P V FI ++ + +P ++SRCQ+F F +
Sbjct: 134 RFKIYIIDEVHMFTKEAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSRCQRFDFGGI 193
Query: 584 KDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-ISVPLVQ 642
+ +I+ L +I EG+ + +AL+L+A +++GS+RD++ LEQL G R I+V V
Sbjct: 194 RMDEIVTRLAYIVENEGVTAEPEALRLLARKANGSMRDSQSLLEQLLAFGGREITVADVN 253
Query: 643 ELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+++G E++ ++ + D + + G++P L+ QL D++
Sbjct: 254 QMLGAAGSEQIAVIMTALAARDAAAVLAYFDQALTRGIDPGQLIEQLLGFFRDMM 308
>gi|410582418|ref|ZP_11319524.1| DNA polymerase III, subunit gamma/tau [Thermaerobacter subterraneus
DSM 13965]
gi|410505238|gb|EKP94747.1| DNA polymerase III, subunit gamma/tau [Thermaerobacter subterraneus
DSM 13965]
Length = 781
Score = 177 bits (448), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 196/378 (51%), Gaps = 20/378 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F +VGQ V + L+NA+ +V Y+F GP GTGKTS A++ A+A+
Sbjct: 5 YQALYRSWRPQRFDGVVGQEHVIRTLANALRTGRVAHAYLFAGPRGTGKTSVAKLLAKAV 64
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NCQS E +PC C+ C + G + ++ E+ N + I +L + + + +Y++
Sbjct: 65 NCQSPEGVEPCNRCDLCREINDGSTMDVLEIDAASNRGIDEIRELRERVRYAPARGRYKV 124
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P +FIL ++ LP I+SRCQ+F F ++
Sbjct: 125 YIIDEVHMLTTEAFNALLKTLEEPPTHALFILATTEPHRLPATIVSRCQRFDFHRLSPEQ 184
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L+ + + G+E + +AL+L+A ++G LRDA L+Q L++ G R+ V +V EL+G
Sbjct: 185 IVQRLEAVCTAMGVEAEPEALRLLARLAEGGLRDALSLLDQCLAMGGDRLEVAVVTELLG 244
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
L E ++ L + D ++ + + GV+ LA + D +A D
Sbjct: 245 LAPGEGILALTRAVVEGDMGAGLRAVADLAAQGVD-------LAQALRDWVACWRDLLAL 297
Query: 707 R----HRRKFF-------RRQPLSKEEMEKLRQA-LKTLSEAEKQLRMSNDKLTWLTAAL 754
R R + R +PL++ + A L+E E LR S L AAL
Sbjct: 298 RSGLDSRHLLYAGEDLAARLEPLARTLDDATALACFDALAEGEALLRWSGQPRLALEAAL 357
Query: 755 LQLAPDQQYVLPSSSADT 772
++ ++ LP +A T
Sbjct: 358 IRAVGERLARLPGGAAGT 375
>gi|303234953|ref|ZP_07321578.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna
BVS033A4]
gi|302494071|gb|EFL53852.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna
BVS033A4]
Length = 537
Score = 177 bits (448), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 198/356 (55%), Gaps = 11/356 (3%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q + +KY P TF + GQ + L N + + + Y+F G GTGKTSCA+IFARA+N
Sbjct: 2 QAIYRKYRPDTFDKVYGQKHITDILKNQIETKNISHAYIFSGSRGTGKTSCAKIFARAIN 61
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYR 526
C L+ PC C +C S + +I E+ N + I +L D ++ PP+ +Y+
Sbjct: 62 CLDLQDGNPCNKCENCQSSLEESTLDIVEMDAASNRRIDDIRELRDKVIY--PPTKLKYK 119
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+++ D+ ++ + ++A+ K+++ P+ +VFIL ++ +D +P I+SRCQ++ F +
Sbjct: 120 VYIIDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMINSK 179
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELV 645
DI +++I + ++D DA++LIA+++DG++RDA L+Q LS+ + I+ + +++
Sbjct: 180 DISDNIKYILNDLNRKMDDDAIELIANKADGAMRDALSILDQVLSIEKENITKQDINDIL 239
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLA-LMSQLATVITDILAGSYDFT 704
G++ ++ + L++ + D + NL I +P+ +M +L ++L
Sbjct: 240 GIVDNKGIFKLVNSIIKKDATEVLGNLYTISHN--KPVENVMDELLNHFRNLLLSKNGLE 297
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLS---EAEKQLRMSNDKLTWLTAALLQL 757
K R + ++ E+ RQ ++++S E +K+L+ ++++ L +++L
Sbjct: 298 KIRQNNTQYNDDYNAQSELITNRQIVESMSIIIEHQKKLKQADNQKALLEILVMRL 353
>gi|295113711|emb|CBL32348.1| DNA polymerase III, subunits gamma and tau [Enterococcus sp. 7L76]
Length = 586
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 207/391 (52%), Gaps = 12/391 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ + Q L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C +C++ G+ ++ E+ N E I D+ D + ++Y++
Sbjct: 63 NCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I + ++ ++ AL +I ++G +RDA L+Q +S +++++ ++ G
Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ E + + ++ D ++ L I+ G E + L D+L A
Sbjct: 243 SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPKLL 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA---- 758
K + F ++ ++ EK+ Q ++ LS+ + ++R +N+ +L A ++LA
Sbjct: 303 AEKAGTLTEAF-KELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKTVQ 361
Query: 759 PDQQYVLPSSSADTSFSHSP--LDLENAGGR 787
P++ +++ D S +P DL+N G+
Sbjct: 362 PNKHNTPETTNQDGSAEGNPELADLQNQIGQ 392
>gi|422729599|ref|ZP_16785999.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0012]
gi|315149916|gb|EFT93932.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0012]
Length = 586
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 207/391 (52%), Gaps = 12/391 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ + Q L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C +C++ G+ ++ E+ N E I D+ D + ++Y++
Sbjct: 63 NCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I + ++ ++ AL +I ++G +RDA L+Q +S +++++ ++ G
Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ E + + ++ D ++ L I+ G E + L D+L A
Sbjct: 243 SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPKLL 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA---- 758
K + F ++ ++ EK+ Q ++ LS+ + ++R +N+ +L A ++LA
Sbjct: 303 AEKAGTLTEAF-KELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKTVQ 361
Query: 759 PDQQYVLPSSSADTSFSHSP--LDLENAGGR 787
P++ +++ D S +P DL+N G+
Sbjct: 362 PNKHNTPETANQDGSAEGNPELADLQNQIGQ 392
>gi|257421610|ref|ZP_05598600.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
X98]
gi|422707281|ref|ZP_16764978.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0043]
gi|257163434|gb|EEU93394.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
X98]
gi|315155639|gb|EFT99655.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0043]
Length = 586
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 207/391 (52%), Gaps = 12/391 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ + Q L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C +C++ G+ ++ E+ N E I D+ D + ++Y++
Sbjct: 63 NCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I + ++ ++ AL +I ++G +RDA L+Q +S +++++ ++ G
Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ E + + ++ D ++ L I+ G E + L D+L A
Sbjct: 243 SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPKLL 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA---- 758
K + F ++ ++ EK+ Q ++ LS+ + ++R +N+ +L A ++LA
Sbjct: 303 AEKAGTLTEAF-KELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKTVQ 361
Query: 759 PDQQYVLPSSSADTSFSHSP--LDLENAGGR 787
P++ +++ D S +P DL+N G+
Sbjct: 362 PNKHNTPETTNQDGSAEGNPELADLQNQIGQ 392
>gi|373456663|ref|ZP_09548430.1| DNA polymerase III, subunits gamma and tau [Caldithrix abyssi DSM
13497]
gi|371718327|gb|EHO40098.1| DNA polymerase III, subunits gamma and tau [Caldithrix abyssi DSM
13497]
Length = 522
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 158/272 (58%), Gaps = 1/272 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
+ ++Y P+TF +++GQ V++ L+NA+ ++ Y+F GP G GKT+ ARI A+A+NC+
Sbjct: 6 IARRYRPQTFEEVIGQEHVSKTLANAIANGRIAHAYIFSGPRGVGKTTTARILAKAVNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
P PC C SC + +G + ++ E+ N + I +L + + + +YR+++
Sbjct: 66 KGPTPTPCNACPSCQAITKGNALDVYEIDGASNRGIDEIRNLREKIRFAPSMGKYRVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P V+FI ++ + +P I+SRCQ+F F +M I+
Sbjct: 126 DEVHMLTKEAFNALLKTLEEPPEHVIFIFATTEIHRVPPTILSRCQRFDFRRMPIKTIME 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVGLIS 649
L+ I E I+++++AL IA ++DGS+RD++ L+QL S G I V + +G+I
Sbjct: 186 HLRKICDSENIKVEEEALLQIAKKADGSMRDSQSILDQLISFSGNEIKFEDVAKALGVIH 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVE 681
++ L D ++D N + I +TG +
Sbjct: 246 QDEFFHLTDYIRNSDIKNIILTANKIFQTGYD 277
>gi|331266204|ref|YP_004325834.1| DNA polymerase III subunits gamma and tau [Streptococcus oralis
Uo5]
gi|326682876|emb|CBZ00493.1| DNA polymerase III subunits gamma and tau [Streptococcus oralis
Uo5]
Length = 552
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 180/337 (53%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I +Q I SKE I + DA+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKDHIQAILSKENISSEPDAVEIIARRAEGGMRDALSILDQALSLTQGNALTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + +L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALAQQDVPKALDSLNLLFENGKSMTRFVTDLLQYLRDLLVVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F LS+E + E +R A +L++ + L+
Sbjct: 302 THHSPVFMDNLALSQESLFEMIRIATVSLADMKASLQ 338
>gi|289432471|ref|YP_003462344.1| DNA polymerase III subunits gamma/tau [Dehalococcoides sp. GT]
gi|288946191|gb|ADC73888.1| DNA polymerase III, subunits gamma and tau [Dehalococcoides sp. GT]
Length = 570
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 118/374 (31%), Positives = 198/374 (52%), Gaps = 18/374 (4%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q +K+ P+T DLVGQ VA L NA+ ++ Y+F GP GTGKTS RI A+A+N
Sbjct: 7 QVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVN 66
Query: 469 CQSLE-QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
C + + + +PC C C+S G S +I E+ N + I +L + + S + Y++
Sbjct: 67 CTTNQGKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKV 126
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS + +A+ K ++ P RV+FIL ++ + + I+SRCQ+F F ++ D
Sbjct: 127 YIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLVD 186
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVG 646
+ L I+ EGI ++ +ALKLIA + GS RD E L+Q+ + G IS+ VQ +G
Sbjct: 187 MTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALG 246
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL------AGS 700
+ DE++ L + L D N +K L ++ G++ +L + I+ S
Sbjct: 247 ISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGAESS 306
Query: 701 YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLT--AALLQLA 758
+ T D ++ + ++ +E + +A+K S QL S+D + L+ AL+ +
Sbjct: 307 LELTAD-EKKALQKVSGITN--LENITKAIKAFS----QLDFSSDTASSLSFELALIDAS 359
Query: 759 PDQQYV-LPSSSAD 771
D+ V LP+ S D
Sbjct: 360 LDENTVPLPNKSKD 373
>gi|423645700|ref|ZP_17621295.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD166]
gi|401266777|gb|EJR72847.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD166]
Length = 548
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 206/371 (55%), Gaps = 25/371 (6%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY P F +L+GQN + Q + NA+ K Y+F GP GTGKT+ A++ A +L
Sbjct: 2 YQALYRKYRPTNFIELIGQNHIKQTIQNALKLAKFSHAYMFTGPRGTGKTTIAKLIATSL 61
Query: 468 NCQSLE-QPKPCGFCNSCISHDRGKSR-NIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC++L + +PC C+ C RG S ++ E+ N E I ++ + + + +Y
Sbjct: 62 NCENLNNEGEPCNECSQC-KAIRGNSHADVLEIDAASNNGVEQIREIREQVAYAPGTGKY 120
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ LS +++A+ K ++ P+ V+FIL ++ + +P IISRCQ+F F ++
Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKVPATIISRCQRFDFRRIGP 180
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPL----- 640
DII L+ +A KE ++I+++AL+L+ + G +RDA LSL+ Q I+
Sbjct: 181 RDIIERLRHVAKKEEVKIEEEALQLLGMLAQGGMRDA------LSLMDQTIAFATNETIT 234
Query: 641 ---VQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD-I 696
V E+VG IS EK+ + L +T+ + + ++ G EP+ L+ L + D +
Sbjct: 235 KDDVSEVVGRISIEKIEACIGDLLKGNTIEILNLINQVILNGKEPIYLLEDLIGYLRDLV 294
Query: 697 LAGSYDFTKDR-----HRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLT 751
++ +++ +D KF+ + L + E+ K++ ++ L+E + +++ SN+ L
Sbjct: 295 ISKAFEVQEDNITTAILNNKFY--ELLEEGEIHKMQMMIRKLTEVKNEMKFSNNAQVSLE 352
Query: 752 AALLQLAPDQQ 762
L+QLA + Q
Sbjct: 353 VGLIQLATEAQ 363
>gi|402814600|ref|ZP_10864194.1| DNA polymerase III subunit gamma/tau [Paenibacillus alvei DSM 29]
gi|402508447|gb|EJW18968.1| DNA polymerase III subunit gamma/tau [Paenibacillus alvei DSM 29]
Length = 589
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 111/370 (30%), Positives = 184/370 (49%), Gaps = 6/370 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H L + + P++F+D+VGQ + Q L N++ R+ Y+F GP GTGKTS A+I A+A+
Sbjct: 3 HIALYRAWRPQSFQDMVGQQHIIQTLQNSLRERRFSHAYLFSGPRGTGKTSAAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ P+PC C +C G ++ E+ N E I DL + + + +Y++
Sbjct: 63 NCEQGPSPEPCNACEACQRITAGAVMDVVEIDAASNRGVEEIRDLREKVKYAPTEVRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+FIL ++ LP IISRCQ+F F ++ A+
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPSHVMFILATTEPHRLPATIISRCQRFDFRRVSLAE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ L + +E I+ D D+L IA SDG +RDA L+Q S I+ V ++ G
Sbjct: 183 QVQRLAQVCKEENIQADHDSLTYIAKLSDGGMRDAISLLDQAASFTDGAITYQQVLDITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
+ +E+ +L + D + + + +M+ G M L D+L S D
Sbjct: 243 GMPEERFAELARAVQAGDVGSVLSVVEQLMQEGKSADKCMESLLYFFRDLLMMKMVPSGD 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
DR R R +L + TL+ + ++ + T ALLQLA Q
Sbjct: 303 TLTDRLTRVESFRDLAEGFTESRLFHIIDTLNRYQTDMKFAVQPQTLFEVALLQLAASGQ 362
Query: 763 YVLPSSSADT 772
L +ADT
Sbjct: 363 RPL-HRAADT 371
>gi|357042702|ref|ZP_09104405.1| hypothetical protein HMPREF9138_00877 [Prevotella histicola F0411]
gi|355369081|gb|EHG16483.1| hypothetical protein HMPREF9138_00877 [Prevotella histicola F0411]
Length = 600
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 112/355 (31%), Positives = 189/355 (53%), Gaps = 14/355 (3%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ-SL 472
KY P +F +VGQ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC+ +
Sbjct: 10 KYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEHPI 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVF 530
+ + C C SC + + G+S NI E+ N E+I L++ T PP +Y++F+
Sbjct: 70 AEGEACNECESCNAFNEGRSYNIFELDAASNNSVENIKSLMEQ--TRIPPQVGRYKVFII 127
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M DII
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKVLPTILSRCQIYDFERMTVRDIIG 187
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+ +A KE I+ D+ AL +IA ++DG +RDA +Q + Q IS V E + ++
Sbjct: 188 HLKSVAEKENIKYDEQALNVIAEKADGGMRDALSIFDQAASFSQGDISYQKVIEDLNVLD 247
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT----- 704
+E +++DLAL + L ++ G + L++ LA+ + ++L T
Sbjct: 248 EENYFNIIDLALENKVSEIMVLLNTVINKGFDGGNLINGLASHVRNVLMAKDAQTLPLLE 307
Query: 705 -KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
D+ R ++ + K L ALK ++ + + R S++K + L+++A
Sbjct: 308 VSDQQRLRY--QSQAQKCPTPFLYDALKIMNRCDVEYRQSSNKRLLVELTLIEVA 360
>gi|29377253|ref|NP_816407.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
V583]
gi|227554263|ref|ZP_03984310.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
HH22]
gi|229549105|ref|ZP_04437830.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
ATCC 29200]
gi|255971824|ref|ZP_05422410.1| DNA-directed DNA polymerase III [Enterococcus faecalis T1]
gi|256616720|ref|ZP_05473566.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 4200]
gi|256763401|ref|ZP_05503981.1| DNA-directed DNA polymerase III [Enterococcus faecalis T3]
gi|256958005|ref|ZP_05562176.1| DNA-directed DNA polymerase III [Enterococcus faecalis DS5]
gi|257079943|ref|ZP_05574304.1| DNA-directed DNA polymerase III [Enterococcus faecalis JH1]
gi|257087744|ref|ZP_05582105.1| DNA-directed DNA polymerase III [Enterococcus faecalis D6]
gi|257091016|ref|ZP_05585377.1| DNA polymerase III gamma and tau subunits [Enterococcus faecalis
CH188]
gi|294779698|ref|ZP_06745086.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
PC1.1]
gi|300861270|ref|ZP_07107357.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TUSoD Ef11]
gi|307269190|ref|ZP_07550545.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX4248]
gi|307277017|ref|ZP_07558126.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX2134]
gi|307288600|ref|ZP_07568582.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0109]
gi|307290217|ref|ZP_07570133.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0411]
gi|312900139|ref|ZP_07759455.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0470]
gi|312902602|ref|ZP_07761808.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0635]
gi|384514104|ref|YP_005709197.1| DNA polymerase III subunit gamma/tau DnaX [Enterococcus faecalis
OG1RF]
gi|384519569|ref|YP_005706874.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
62]
gi|397700965|ref|YP_006538753.1| DNA polymerase III, subunits gamma and tau [Enterococcus faecalis
D32]
gi|421513235|ref|ZP_15960014.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
ATCC 29212]
gi|422687210|ref|ZP_16745392.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0630]
gi|422690941|ref|ZP_16748982.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0031]
gi|422703247|ref|ZP_16761072.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX1302]
gi|422710930|ref|ZP_16767865.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0027]
gi|422714866|ref|ZP_16771592.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0309A]
gi|422718006|ref|ZP_16774679.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0309B]
gi|422720179|ref|ZP_16776802.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0017]
gi|422724448|ref|ZP_16780924.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX2137]
gi|422725474|ref|ZP_16781935.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0312]
gi|422731849|ref|ZP_16788197.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0645]
gi|422741404|ref|ZP_16795429.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX2141]
gi|422868891|ref|ZP_16915418.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX1467]
gi|424672040|ref|ZP_18109021.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
599]
gi|428767925|ref|YP_007154036.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
str. Symbioflor 1]
gi|430359096|ref|ZP_19425712.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
OG1X]
gi|430370847|ref|ZP_19429254.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
M7]
gi|29344719|gb|AAO82477.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
V583]
gi|227176623|gb|EEI57595.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
HH22]
gi|229305730|gb|EEN71726.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
ATCC 29200]
gi|255962842|gb|EET95318.1| DNA-directed DNA polymerase III [Enterococcus faecalis T1]
gi|256596247|gb|EEU15423.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 4200]
gi|256684652|gb|EEU24347.1| DNA-directed DNA polymerase III [Enterococcus faecalis T3]
gi|256948501|gb|EEU65133.1| DNA-directed DNA polymerase III [Enterococcus faecalis DS5]
gi|256987973|gb|EEU75275.1| DNA-directed DNA polymerase III [Enterococcus faecalis JH1]
gi|256995774|gb|EEU83076.1| DNA-directed DNA polymerase III [Enterococcus faecalis D6]
gi|256999828|gb|EEU86348.1| DNA polymerase III gamma and tau subunits [Enterococcus faecalis
CH188]
gi|294453189|gb|EFG21603.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
PC1.1]
gi|300850309|gb|EFK78059.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TUSoD Ef11]
gi|306498638|gb|EFM68139.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0411]
gi|306500435|gb|EFM69770.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0109]
gi|306506312|gb|EFM75473.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX2134]
gi|306514482|gb|EFM83042.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX4248]
gi|310634272|gb|EFQ17555.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0635]
gi|311292774|gb|EFQ71330.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0470]
gi|315025455|gb|EFT37387.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX2137]
gi|315032629|gb|EFT44561.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0017]
gi|315035150|gb|EFT47082.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0027]
gi|315143828|gb|EFT87844.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX2141]
gi|315154258|gb|EFT98274.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0031]
gi|315159651|gb|EFU03668.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0312]
gi|315162057|gb|EFU06074.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0645]
gi|315165347|gb|EFU09364.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX1302]
gi|315573755|gb|EFU85946.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0309B]
gi|315579587|gb|EFU91778.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0630]
gi|315580330|gb|EFU92521.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0309A]
gi|323481702|gb|ADX81141.1| DNA polymerase III, subunits gamma and tau [Enterococcus faecalis
62]
gi|327535993|gb|AEA94827.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus faecalis
OG1RF]
gi|329572917|gb|EGG54538.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX1467]
gi|397337604|gb|AFO45276.1| DNA polymerase III, subunits gamma and tau [Enterococcus faecalis
D32]
gi|401673609|gb|EJS79988.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
ATCC 29212]
gi|402357085|gb|EJU91799.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
599]
gi|427186098|emb|CCO73322.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
str. Symbioflor 1]
gi|429513451|gb|ELA03032.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
OG1X]
gi|429515212|gb|ELA04730.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
M7]
Length = 586
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 207/391 (52%), Gaps = 12/391 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ + Q L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C +C++ G+ ++ E+ N E I D+ D + ++Y++
Sbjct: 63 NCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I + ++ ++ AL +I ++G +RDA L+Q +S +++++ ++ G
Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ E + + ++ D ++ L I+ G E + L D+L A
Sbjct: 243 SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPKLL 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA---- 758
K + F ++ ++ EK+ Q ++ LS+ + ++R +N+ +L A ++LA
Sbjct: 303 AEKAGTLTEAF-KELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKTVQ 361
Query: 759 PDQQYVLPSSSADTSFSHSP--LDLENAGGR 787
P++ +++ D S +P DL+N G+
Sbjct: 362 PNKHNTPETANQDGSAEGNPELADLQNQIGQ 392
>gi|256963882|ref|ZP_05568053.1| DNA-directed DNA polymerase III [Enterococcus faecalis HIP11704]
gi|307271831|ref|ZP_07553102.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0855]
gi|422694065|ref|ZP_16752070.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX4244]
gi|256954378|gb|EEU71010.1| DNA-directed DNA polymerase III [Enterococcus faecalis HIP11704]
gi|306511709|gb|EFM80708.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0855]
gi|315148740|gb|EFT92756.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX4244]
Length = 586
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 207/391 (52%), Gaps = 12/391 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ + Q L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C +C++ G+ ++ E+ N E I D+ D + ++Y++
Sbjct: 63 NCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I + ++ ++ AL +I ++G +RDA L+Q +S +++++ ++ G
Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ E + + ++ D ++ L I+ G E + L D+L A
Sbjct: 243 SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPKLL 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA---- 758
K + F ++ ++ EK+ Q ++ LS+ + ++R +N+ +L A ++LA
Sbjct: 303 AEKAGTLTEAF-KELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKTVQ 361
Query: 759 PDQQYVLPSSSADTSFSHSP--LDLENAGGR 787
P++ +++ D S +P DL+N G+
Sbjct: 362 PNKHNTPETANQDGSTEGNPELADLQNQIGQ 392
>gi|260591457|ref|ZP_05856915.1| DNA polymerase III, gamma and tau subunit [Prevotella veroralis
F0319]
gi|260536488|gb|EEX19105.1| DNA polymerase III, gamma and tau subunit [Prevotella veroralis
F0319]
Length = 604
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 109/360 (30%), Positives = 193/360 (53%), Gaps = 24/360 (6%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ-SL 472
KY P +F +VGQ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC+
Sbjct: 10 KYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEHPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVF 530
++ + C C SC + G+S NI E+ N E+I L++ T PP +Y++F+
Sbjct: 70 KEGEACNECESCKAFTEGRSYNIFELDAASNNSVENIKTLMEQ--TRIPPQVGRYKVFII 127
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M +II
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPNIIN 187
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+ +A KE I+ ++ AL +IA ++DG +RDA +Q + Q I+ V E + ++
Sbjct: 188 HLKAVAEKENIQYEEQALNIIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNVLD 247
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT----- 704
++ ++++LAL + + L ++ G + L++ LA+ + ++L T
Sbjct: 248 EDNYFNIINLALENKVSDIMVLLNNVINKGFDGGHLINGLASHVRNVLMAKDAQTLPLLE 307
Query: 705 -KDRHRRKFFRRQPLSKEEMEK-----LRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
D+ R+++ +E+ +K L ALK ++ + + R S++K + L+Q+A
Sbjct: 308 VSDQQRKRY-------QEQAQKCPTLFLYNALKIMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|257420166|ref|ZP_05597160.1| DNA-directed DNA polymerase III [Enterococcus faecalis T11]
gi|257161994|gb|EEU91954.1| DNA-directed DNA polymerase III [Enterococcus faecalis T11]
Length = 586
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 207/391 (52%), Gaps = 12/391 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ + Q L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C +C++ G+ ++ E+ N E I D+ D + ++Y++
Sbjct: 63 NCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I + ++ ++ AL +I ++G +RDA L+Q +S +++++ ++ G
Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ E + + ++ D ++ L I+ G E + L D+L A
Sbjct: 243 SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPKLL 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA---- 758
K + F ++ ++ EK+ Q ++ LS+ + ++R +N+ +L A ++LA
Sbjct: 303 AEKAGTLTEAF-KELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKTVQ 361
Query: 759 PDQQYVLPSSSADTSFSHSP--LDLENAGGR 787
P++ +++ D S +P DL+N G+
Sbjct: 362 PNKHNTPETANQDGSAEGNPELADLQNQIGQ 392
>gi|289548682|ref|YP_003473670.1| DNA polymerase III subunits gamma and tau [Thermocrinis albus DSM
14484]
gi|289182299|gb|ADC89543.1| DNA polymerase III, subunits gamma and tau [Thermocrinis albus DSM
14484]
Length = 469
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 158/264 (59%), Gaps = 1/264 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
+KY P+ F +VGQ + + NAV K+ Y+F GP GTGKT+ ARI RA+NC
Sbjct: 5 FARKYRPKKFSQVVGQETAKRVILNAVRLGKLHHAYLFSGPRGTGKTTLARILTRAVNCL 64
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ ++ +PCG C +C++ D+G ++ E+ N + I +L D + + +Y++++
Sbjct: 65 NPQEGEPCGECENCVAIDKGSFPDLVEMDAASNRGIDDIRNLKDAVSYTPLKGKYKVYIL 124
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P R +F+L ++ + +P I+SRCQ+ F K+++ ++
Sbjct: 125 DEAHMLTKEAFNALLKTLEEPPPRTIFVLCTTEYEKIPPTILSRCQRIVFSKLEEDLVVS 184
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L +I +EG+ ++ AL++IA SDG++RDA L+Q + G+ +S +V+E +G++S
Sbjct: 185 HLFYICREEGLNCEEKALRIIARASDGAMRDALSLLDQAATYGEGNVSEQVVEEFLGIVS 244
Query: 650 DEKLVDLLDLALSADTVNTVKNLR 673
EK+ + L L L D + LR
Sbjct: 245 QEKVREFLLLLLEGDVDTALARLR 268
>gi|406027283|ref|YP_006726115.1| DNA polymerase III subunit gamma/tau [Lactobacillus buchneri CD034]
gi|405125772|gb|AFS00533.1| DNA polymerase III subunit gamma/tau [Lactobacillus buchneri CD034]
Length = 600
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 173/318 (54%), Gaps = 15/318 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F ++VGQ+++ + L NA++ ++ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRPQRFDEIVGQSIITRTLKNALITKQTSHAYLFTGPRGTGKTSAAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC L+ +PC C +C + + G ++ E+ N E I D+ D + + Y++
Sbjct: 63 NCHYLKDGEPCNQCETCKAINEGSLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR QKF F ++K D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQKFDFKRIKPQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ +++I ++ +E D ALKLIA ++G +RDA L+Q +S +I+ + G
Sbjct: 183 ILERMEYILDQKKVEYDDKALKLIAKAAEGGMRDALSILDQAMSYGDNKITYENALLVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+++E L + + DT + + ++ I++ G + + L + DIL
Sbjct: 243 SVTNELLTTYMQQVVKKDTKSALITIQKILDEGKDASRFIEDLTSYCQDIL--------- 293
Query: 707 RHRRKFFRRQPLSKEEME 724
+++ P EEME
Sbjct: 294 -----LYQQDPGIVEEME 306
>gi|422734530|ref|ZP_16790819.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX1341]
gi|315168761|gb|EFU12778.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX1341]
Length = 586
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 207/391 (52%), Gaps = 12/391 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ + Q L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C +C++ G+ ++ E+ N E I D+ D + ++Y++
Sbjct: 63 NCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I + ++ ++ AL +I ++G +RDA L+Q +S +++++ ++ G
Sbjct: 183 IVDHMAHIMKEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ E + + ++ D ++ L I+ G E + L D+L A
Sbjct: 243 SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPKLL 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA---- 758
K + F ++ ++ EK+ Q ++ LS+ + ++R +N+ +L A ++LA
Sbjct: 303 AEKAGTLTEAF-KELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKTVQ 361
Query: 759 PDQQYVLPSSSADTSFSHSP--LDLENAGGR 787
P++ +++ D S +P DL+N G+
Sbjct: 362 PNKHNTPETANQDGSAEGNPELADLQNQIGQ 392
>gi|347525069|ref|YP_004831817.1| DNA polymerase III subunit gamma/tau [Lactobacillus ruminis ATCC
27782]
gi|345284028|gb|AEN77881.1| DNA polymerase III subunit gamma/tau [Lactobacillus ruminis ATCC
27782]
Length = 577
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 188/363 (51%), Gaps = 19/363 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+TF DLVGQ+++ + L NA+ ++ Y+F GP GTGKTSCA++FA+AL
Sbjct: 3 YQALYRVWRPQTFEDLVGQDMITKTLKNALATKQTTHAYLFAGPRGTGKTSCAKLFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + PC C C + G+ ++ E+ N E I D+ D + + + Y++
Sbjct: 63 NCPNQVNGDPCNECEICKAITAGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTQADYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ +P IISR Q+F F ++
Sbjct: 123 YIIDEVHMLSTSAFNALLKTLEEPPANVVFILATTDPHKIPATIISRTQRFDFKRITSGA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ +++I ++ E D+ AL +IA ++G +RDA L+Q LS +++ + G
Sbjct: 183 ILERMEYILKQKQFEYDEKALNVIARAAEGGMRDALSILDQVLSFGDNEVTLDNALLVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--------- 697
++ E L+ L+ + +TV ++ + I++ G + L+ L D+L
Sbjct: 243 SVTRENLIKYLNQVQNHETVAGLQTIHAILDEGKDAKRLLEDLINCCRDLLLYKQAPEML 302
Query: 698 --AGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALL 755
GS D + + P E L + + TL+E ++ +R S + +L +
Sbjct: 303 EQTGSV-MIDDEFKDMAEKSNP------ETLYRYIDTLNEQQENMRYSMHQSVYLEVLTV 355
Query: 756 QLA 758
+LA
Sbjct: 356 KLA 358
>gi|222152178|ref|YP_002561338.1| DNA polymerase III gamma and tau subunits [Macrococcus caseolyticus
JCSC5402]
gi|222121307|dbj|BAH18642.1| DNA polymerase III gamma and tau subunits homolog [Macrococcus
caseolyticus JCSC5402]
Length = 546
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 158/291 (54%), Gaps = 1/291 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + ++F ++VGQ V L NA+ + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRSQSFEEVVGQKHVTTTLKNAIQKNKISHAYLFNGPRGTGKTSIAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C++C+S +G + ++ E+ N + I ++ D + + S Y++
Sbjct: 63 NCTVSTDGEPCNSCDTCVSITKGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPGESTYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ +++A+ K ++ P VFIL ++ +P IISRCQ+F F + D
Sbjct: 123 YIIDEVHMLTTGAFNALLKTLEEPPAHAVFILATTEPHKVPATIISRCQRFDFKAISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
I L ++ EGI+ D+ AL IA+ ++G +RDA L+Q G + +++ V + G
Sbjct: 183 IAEHLAYVCRTEGIKYDEGALNFIATTAEGGMRDALSILDQAIAFGTETLTLEHVHSVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+ E +L D ++ D K ++ G E L++ L + DI+
Sbjct: 243 SVGREDFFELTDYIITHDVKEAFKQFHRLLSEGKETTRLVNDLIYFLRDII 293
>gi|359463526|ref|ZP_09252089.1| DNA polymerase III subunits gamma and tau [Acaryochloris sp. CCMEE
5410]
Length = 700
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 187/363 (51%), Gaps = 15/363 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+ F DLVGQ+ +A L+NA+ ++ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQVFADLVGQDAIATTLTNAIEFERIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQPKP--CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + +P P CG C+ C G S ++ E+ N ++I DL++ + ++
Sbjct: 63 NCLNSPKPTPIPCGTCSVCQEVALGTSLDVIEIDAASNTGVDNIRDLIERAQFAPVQCRF 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+I+ D+ LS +++A+ K ++ P RVVFIL ++ + IISRCQ+F F ++
Sbjct: 123 KIYCLDEVHMLSTAAFNALLKTLEEPPDRVVFILATTDPQRVLPTIISRCQRFDFRRIAL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+I L IA +E I I A++LIA + G LRDAE L+QLSLL I V +LV
Sbjct: 183 DPMIQHLTHIAEQESIAITPSAVELIAQVAQGGLRDAESLLDQLSLLSGEIDNTQVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G + ++ L+ LL + V+ +++ G EPL ++ LA D+L T
Sbjct: 243 GSVPEQALLALLQAIIEQQPALMVERTHALLDRGREPLTVLQNLAGFYRDLLIAKTAPT- 301
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKT---------LSEAEKQLRMSNDKLTWLTAALLQ 756
RR + ++ +L Q + L E Q++ S WL +LL
Sbjct: 302 ---RRDLVAITAPTWTDLCQLAQQFEVNDILAKQQHLRNCETQIKNSTQPRLWLEVSLLG 358
Query: 757 LAP 759
L P
Sbjct: 359 LLP 361
>gi|378835597|ref|YP_005204873.1| DNA polymerase III subunits gamma and tau [Mycoplasma hyorhinis
GDL-1]
gi|385858421|ref|YP_005904932.1| DNA polymerase III subunits gamma and tau [Mycoplasma hyorhinis
MCLD]
gi|330723510|gb|AEC45880.1| DNA polymerase III subunits gamma and tau [Mycoplasma hyorhinis
MCLD]
gi|367460382|gb|AEX13905.1| DNA polymerase III, subunits gamma and tau [Mycoplasma hyorhinis
GDL-1]
Length = 712
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 115/353 (32%), Positives = 191/353 (54%), Gaps = 20/353 (5%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC-QSL 472
KY P T D+VGQ+ + Q L N + ++ Y+F GP GTGKTS A+IFA LNC
Sbjct: 11 KYRPTTLVDVVGQDFIIQTLKNIISTNQIFHAYLFSGPRGTGKTSVAKIFATTLNCSHKT 70
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ PC C +++ S +I E+ N + I +L++N+ SQY+I++ D+
Sbjct: 71 DLFIPCQKCQDSVNN----SFDIIEMDGASNNGVDEIRELINNVNNLPTNSQYKIYIIDE 126
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ P+ V+FIL ++ +P I+SR Q+F F K+ + +I+ L
Sbjct: 127 VHMLSSSAFNAFLKTLEEPPKHVIFILATTEAHKIPLTILSRVQRFNFRKISEKEIVSRL 186
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLISDE 651
+++ KE I +K+AL IA S GSLRDA +EQL+ + +I + V+ L GL S +
Sbjct: 187 EYVLEKEEISYEKEALWAIAQLSSGSLRDALAMVEQLNNFSRSKIHMIDVENLFGLTSTQ 246
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRK 711
KL++LL + + + I+E G P L+S L +++ + + Y TKD +
Sbjct: 247 KLINLLKEIHNENLQQIFHLISTILEQGANPNILISSLISLVKNFII--YQKTKDITLLE 304
Query: 712 FFRRQPLSKEEMEKLRQALKT-------LSEAEKQLRMSNDKLTWLTAALLQL 757
F S E++EK+ +L T L + +K+L SN+ + A+++L
Sbjct: 305 GF-----SVEQIEKIPLSLLTAYKLQDVLVKTQKELISSNNPAMSIQIAIIKL 352
>gi|323488472|ref|ZP_08093718.1| DNA polymerase III subunit gamma/tau [Planococcus donghaensis
MPA1U2]
gi|323397864|gb|EGA90664.1| DNA polymerase III subunit gamma/tau [Planococcus donghaensis
MPA1U2]
Length = 577
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 194/375 (51%), Gaps = 12/375 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q + Y P++F ++ GQ V Q L NA++ K Y+F GP GTGKTS A+IFA+AL
Sbjct: 3 YQAFYRVYRPQSFSEMTGQTHVKQTLQNALLYNKTTHAYLFSGPRGTGKTSAAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC S + G + ++ E N E + ++++ + S S+++I
Sbjct: 63 NCEQAPTAEPCNECTSCRSINEGSNTDVIEFDAASNSRVEEMREIIEKVRFSPANSRFKI 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ LP IISRCQ+F F D
Sbjct: 123 YIIDEVHMLSNSAFNALLKTLEEPPEHVVFILATTEPHKLPLTIISRCQRFDFKSHTQVD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + + + I ++ LK+IA + G +RDA L+Q +S G ++V + G
Sbjct: 183 IVSRMVEVLTDAKIPYNEQVLKIIAQAAAGGMRDALSLLDQVVSFSGDEMTVEDALLVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-----AGSY 701
+S + + + L+ D + L ++ G +P+ L+ T D+L +
Sbjct: 243 SVSQDVFYGIAEALLAKDIGQALTLLEQLVRDGKDPVRLVEDFITFFRDLLLIQTAPDLH 302
Query: 702 DFTK-DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760
D + H +F + ++ E L L LS+ ++++R SN ++ ALL++A
Sbjct: 303 DMLELAAHEPRF--EELANRFESTTLYNWLDILSKTQQEMRFSNHTKIYMETALLKMA-- 358
Query: 761 QQYVLPSSSADTSFS 775
Q +P+ SA ++ S
Sbjct: 359 -QADVPTQSAASAAS 372
>gi|340353634|ref|ZP_08676445.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella pallens ATCC
700821]
gi|339609056|gb|EGQ13933.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella pallens ATCC
700821]
Length = 594
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 192/353 (54%), Gaps = 10/353 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ-SL 472
KY P +F +VGQ + L NAV +++ Y+F GP G GKT+CARIFA+A+NC+
Sbjct: 10 KYRPMSFASVVGQQALTTTLMNAVKSKRLAHAYLFCGPRGVGKTTCARIFAKAINCEHPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVF 530
EQ + C C SC + + G+S NI E+ N E+I L+D T PP +Y++F+
Sbjct: 70 EQGEACNECESCKAFNEGRSYNIFELDAASNNSVENIKALMDQ--TRIPPQVGRYKVFII 127
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M II
Sbjct: 128 DEVHMLSSAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMSVPGIID 187
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+ +A KEGI ++ AL +IA+++DG +RDA +Q + Q I+ V E + ++
Sbjct: 188 HLKKVAEKEGIVYEEAALNVIATKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNVLD 247
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYDFTK 705
+ +++DL+L + L ++ G + L++ LA+ + D+L A +
Sbjct: 248 ADNYFNIVDLSLENKVPEIMVLLNNVINKGFDGGNLINGLASHVRDVLMAKDAQTLSLLA 307
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ ++ +Q +K + L +AL+ ++ + + R S++K + L+Q+A
Sbjct: 308 TSNEQRQRYQQQAAKCPTQFLYKALEIMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|227877637|ref|ZP_03995690.1| possible DNA-directed DNA polymerase [Lactobacillus crispatus
JV-V01]
gi|256849090|ref|ZP_05554523.1| DNA polymerase III [Lactobacillus crispatus MV-1A-US]
gi|262047572|ref|ZP_06020527.1| DNA polymerase III, gamma/tau subunits [Lactobacillus crispatus
MV-3A-US]
gi|312977922|ref|ZP_07789668.1| DNA polymerase III [Lactobacillus crispatus CTV-05]
gi|227862785|gb|EEJ70251.1| possible DNA-directed DNA polymerase [Lactobacillus crispatus
JV-V01]
gi|256713866|gb|EEU28854.1| DNA polymerase III [Lactobacillus crispatus MV-1A-US]
gi|260572148|gb|EEX28713.1| DNA polymerase III, gamma/tau subunits [Lactobacillus crispatus
MV-3A-US]
gi|310895229|gb|EFQ44297.1| DNA polymerase III [Lactobacillus crispatus CTV-05]
Length = 601
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 200/374 (53%), Gaps = 13/374 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF ++GQ + L NA+ R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +CI+ D+G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECANCIAADQGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKED 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ +++I +E I+ + AL +IA +DG +RDA L+Q LS + ++ ++ G
Sbjct: 183 LEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYDDALQITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK- 705
E + +L L+ D ++ + + G ++ + I D+ S K
Sbjct: 243 FADRENIEKILLALLNQDAGQALQFTQDELAKGASSKNILDE----IIDLTTKSLLIVKT 298
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVL 765
D ++++ F L+K+ +EK++ + + + ++N+ L L Q P + +++
Sbjct: 299 DENKQETF----LTKDFIEKIKSV--STDSYYRLINLANNALNDLRYTNQQQIPLEVFLV 352
Query: 766 -PSSSADTSFSHSP 778
SS+A S +P
Sbjct: 353 EASSTAPVQISAAP 366
>gi|256852105|ref|ZP_05557492.1| DNA polymerase III gamma-tau [Lactobacillus jensenii 27-2-CHN]
gi|260661325|ref|ZP_05862238.1| DNA polymerase III gamma-tau [Lactobacillus jensenii 115-3-CHN]
gi|256615517|gb|EEU20707.1| DNA polymerase III gamma-tau [Lactobacillus jensenii 27-2-CHN]
gi|260547780|gb|EEX23757.1| DNA polymerase III gamma-tau [Lactobacillus jensenii 115-3-CHN]
Length = 593
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 192/358 (53%), Gaps = 14/358 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF +VGQ + L NA++R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDSVVGQEAITDTLKNAIIRNKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +C + D G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCLNLQDGEPCNECENCKAADSGAMPDIIEIDAASNNGVDEIREIRDKVKYAPTQGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ +
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKQN 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +E I + AL++IA +DG +RD+ L+Q LS +++ + G
Sbjct: 183 LVDRMKFILEQEDIPYENQALQVIAQVADGGMRDSLSILDQLLSFEKEKVEYKDALNITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD---ILAGSYD- 702
+ E L L+ +++ +++ G L+S+L ++ T+ +L + D
Sbjct: 243 YAAREATEQLFLNLLNQKVSESLELSHKLLQDGATAKNLLSELISLATETMLVLKANKDS 302
Query: 703 --FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
TKD F +Q E ++ Q + +EA LR +N + L L+++A
Sbjct: 303 EFLTKD------FTKQITDVPE-KRYFQLITAANEALNDLRFTNQEEIPLDVFLVKIA 353
>gi|185178753|ref|ZP_02964562.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 5 str. ATCC 27817]
gi|188024380|ref|ZP_02997046.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 7 str. ATCC 27819]
gi|188518706|ref|ZP_03004131.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 11 str. ATCC 33695]
gi|188524139|ref|ZP_03004211.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 12 str. ATCC 33696]
gi|195867490|ref|ZP_03079494.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 9 str. ATCC 33175]
gi|198273501|ref|ZP_03206037.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 4 str. ATCC 27816]
gi|225551370|ref|ZP_03772316.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 8 str. ATCC 27618]
gi|184209363|gb|EDU06406.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 5 str. ATCC 27817]
gi|188018648|gb|EDU56688.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 7 str. ATCC 27819]
gi|188997708|gb|EDU66805.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 11 str. ATCC 33695]
gi|195660025|gb|EDX53405.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 12 str. ATCC 33696]
gi|195660966|gb|EDX54219.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 9 str. ATCC 33175]
gi|198250021|gb|EDY74801.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 4 str. ATCC 27816]
gi|225379185|gb|EEH01550.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 8 str. ATCC 27618]
Length = 603
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 174/316 (55%), Gaps = 7/316 (2%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P F+D++GQNL+ QAL NA + K Y+F GP G GKTS ARIFA ++NC
Sbjct: 6 LYRKYRPHKFKDVIGQNLIKQALINANLNDKTTHAYIFSGPRGIGKTSIARIFAASINCL 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
CG C+ C S +S ++ E+ N + + ++ DN+ +Y++++
Sbjct: 66 KPNNGDCCGECSVCQSIINEQSVDLIELDAASNNGVDQMRNITDNINYLPTLFKYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +W+A+ K V+ P+ V+FI ++ +P IISRCQ++ F ++ ++++
Sbjct: 126 DEAHMLSTSAWNALLKTVEEPPQHVIFIFATTEYQKIPLTIISRCQRYDFNRLNNSELQE 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
+ +A KE I+I+++A+ + +DG+ RD L+QL + I + L+ + GL+ +
Sbjct: 186 LIDLVAKKEDIKINENAINKLIQLADGAGRDCLSILDQLVTNQKVIDIDLINKTFGLVDN 245
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRR 710
K+++L++L D + K + + + G+ A +Q+ ++ D L Y T D
Sbjct: 246 SKVINLIELIQKNDLLELRKFIYELYDYGINLEAFCAQIINILIDYLV--YQKTNDETNL 303
Query: 711 KFFRRQPLSKEEMEKL 726
K +S +E++K+
Sbjct: 304 K-----KISIDELKKI 314
>gi|282859211|ref|ZP_06268333.1| DNA polymerase III, subunit gamma and tau [Prevotella bivia
JCVIHMP010]
gi|424900327|ref|ZP_18323869.1| DNA polymerase III, subunit gamma/tau [Prevotella bivia DSM 20514]
gi|282588030|gb|EFB93213.1| DNA polymerase III, subunit gamma and tau [Prevotella bivia
JCVIHMP010]
gi|388592527|gb|EIM32766.1| DNA polymerase III, subunit gamma/tau [Prevotella bivia DSM 20514]
Length = 595
Score = 176 bits (446), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 110/357 (30%), Positives = 194/357 (54%), Gaps = 18/357 (5%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ-SL 472
KY P TF +VGQ + L NAV K+ Y+F GP G GKT+ ARIFA+A+NC+
Sbjct: 10 KYRPATFDSVVGQAALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTTARIFAKAINCEHPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVF 530
+ + C C SC + + G+S NI E+ N E+I DL++ T PP +Y++F+
Sbjct: 70 SEGEACNECESCKAFNEGRSYNIFELDAASNNSVENIKDLMEQ--TRIPPQIGKYKVFII 127
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A K ++ P +V+FIL ++ + I+SRCQ + F +M DII
Sbjct: 128 DEVHMLSSQAFNAFLKTLEEPPAQVIFILATTEKHKILPTILSRCQIYDFERMSVPDIIE 187
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+ +A+KE I ++ AL +IA ++DG +RDA +Q++ Q I+ V E + ++
Sbjct: 188 HLKRVAAKENITYEEKALNIIAEKADGGMRDALSVFDQVASFSQGNITYQKVIEDLNVLD 247
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMET----GVEPLALMSQLATVITDIL----AGSY 701
++ +++DLAL N V ++ V+M G + L++ LA+ + ++L +
Sbjct: 248 EDNYFNIIDLALQ----NKVSDIMVVMNNAINKGFDAGRLINGLASHVRNVLMAKDVATL 303
Query: 702 DFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ ++K ++ +K L +AL+ +++ + R S++K L+++A
Sbjct: 304 PLLEASEQQKTRYQEQAAKCPTSFLYKALQQMNQCDVNYRQSSNKRLLAELTLIEVA 360
>gi|256844521|ref|ZP_05550007.1| DNA polymerase III [Lactobacillus crispatus 125-2-CHN]
gi|256613599|gb|EEU18802.1| DNA polymerase III [Lactobacillus crispatus 125-2-CHN]
Length = 601
Score = 176 bits (445), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 136/222 (61%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF ++GQ + L NA+ R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +CI+ D+G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECANCIAADQGSMSDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKED 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL 629
+ +++I +E I+ + AL +IA +DG +RDA L+QL
Sbjct: 183 LEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQL 224
>gi|297205020|ref|ZP_06922416.1| DNA polymerase III (DNA directed) gamma-tau [Lactobacillus jensenii
JV-V16]
gi|297149598|gb|EFH29895.1| DNA polymerase III (DNA directed) gamma-tau [Lactobacillus jensenii
JV-V16]
Length = 593
Score = 176 bits (445), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 192/358 (53%), Gaps = 14/358 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF +VGQ + L NA++R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDSVVGQEAITDTLKNAIIRNKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +C + D G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCLNLQDGEPCNECENCKAADSGAMPDIIEIDAASNNGVDEIREIRDKVKYAPTQGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ +
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKQN 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +E I + AL++IA +DG +RD+ L+Q LS +++ + G
Sbjct: 183 LVDRMKFILEQEDIPYENQALQVIAQVADGGMRDSLSILDQLLSFEKEKVEYKDALNITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD---ILAGSYD- 702
+ E L L+ +++ +++ G L+S+L ++ T+ +L + D
Sbjct: 243 YAAREATEQLFLNLLNQKVSESLELSHKLLQDGATAKNLLSELISLATETMLVLKANKDS 302
Query: 703 --FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
TKD F +Q E ++ Q + +EA LR +N + L L+++A
Sbjct: 303 EFLTKD------FTKQITDVPE-KRYFQLITAANEALNDLRFTNQEEIPLDVFLVKIA 353
>gi|337282253|ref|YP_004621724.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus
parasanguinis ATCC 15912]
gi|335369846|gb|AEH55796.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus
parasanguinis ATCC 15912]
Length = 558
Score = 176 bits (445), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 162/292 (55%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVARTLRQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C S G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQVNGEPCNDCYICESITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKLPD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I++ L+ I + EGI + DA+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IVHHLESILATEGIAYEADAVQIIARRAEGGMRDALSILDQALSLTAGSELTTAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + L D + L +I + G ++ L + D+L
Sbjct: 242 GSISLAALDQYVAAILDHDATAALDQLAIIFDNGKNMARFVADLLQYLRDLL 293
>gi|417914929|ref|ZP_12558560.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis bv.
2 str. SK95]
gi|342835680|gb|EGU69914.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis bv.
2 str. SK95]
Length = 552
Score = 176 bits (445), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 106/337 (31%), Positives = 180/337 (53%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCLNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I +Q I SKE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKNHIQTILSKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNALTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + +L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALDSLNLLFENGKSMTRFVTDLLQYLRDLLVVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F LS+E + E +R A +L++ + L+
Sbjct: 302 THHSSVFMDNLALSQESLFEMIRLATVSLADMKASLQ 338
>gi|423262666|ref|YP_007012691.1| DNA polymerase III subunits gamma and tau [Mycoplasma hyorhinis
SK76]
gi|422035203|gb|AFX74045.1| DNA polymerase III subunits gamma and tau [Mycoplasma hyorhinis
SK76]
Length = 712
Score = 176 bits (445), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 115/353 (32%), Positives = 191/353 (54%), Gaps = 20/353 (5%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC-QSL 472
KY P T D+VGQ+ + Q L N + ++ Y+F GP GTGKTS A+IFA LNC
Sbjct: 11 KYRPTTLVDVVGQDFIIQTLKNIISTNQIFHAYLFSGPRGTGKTSVAKIFATTLNCSHKT 70
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ PC C +++ S +I E+ N + I +L++N+ SQY+I++ D+
Sbjct: 71 DLFIPCQKCQDSVNN----SFDIIEMDGASNNGVDEIRELINNVNNLPTNSQYKIYIIDE 126
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ P+ V+FIL ++ +P I+SR Q+F F K+ + +I+ L
Sbjct: 127 VHMLSSSAFNAFLKTLEEPPKHVIFILATTEAHKIPLTILSRVQRFNFRKISEKEIVSRL 186
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLISDE 651
+++ KE I +K+AL IA S GSLRDA +EQL+ + +I + V+ L GL S +
Sbjct: 187 EYVLEKEEISYEKEALWAIAQLSSGSLRDALAMVEQLNNFSRSKIHMIDVENLFGLTSTQ 246
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRK 711
KL++LL + + + I+E G P L+S L +++ + + Y TKD +
Sbjct: 247 KLINLLKEIHNENLQQIFHLISTILEQGANPNILISSLISLVKNFII--YQKTKDITLLE 304
Query: 712 FFRRQPLSKEEMEKLRQALKT-------LSEAEKQLRMSNDKLTWLTAALLQL 757
F S E++EK+ +L T L + +K+L SN+ + A+++L
Sbjct: 305 GF-----SVEQIEKIPLSLLTAYKLQDVLVKTQKELISSNNPAMSIQIAIIKL 352
>gi|154248975|ref|YP_001409800.1| DNA polymerase III subunits gamma and tau [Fervidobacterium nodosum
Rt17-B1]
gi|154152911|gb|ABS60143.1| DNA polymerase III, subunits gamma and tau [Fervidobacterium
nodosum Rt17-B1]
Length = 517
Score = 176 bits (445), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 153/255 (60%), Gaps = 1/255 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+ F D+VGQ + + L+NA+ +K+ Y+F GP GTGKT+ ARI A++LNC+
Sbjct: 4 LYRKYRPKNFYDIVGQEHIKKLLTNALKLQKINHAYIFAGPRGTGKTTTARILAKSLNCE 63
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ +PC C SC + D G ++ E+ N + I + + + + +Y++++
Sbjct: 64 KNQFGEPCNECTSCQAIDNGSHLDVIELDAASNRGIDEIRKIKEGVNFTPVMGKYKVYII 123
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P+ +VFIL +++ + +P I+SRC F + + +II
Sbjct: 124 DEVHMLTREAFNALLKTLEEPPQHIVFILATTNPEKIPPTIMSRCHVLEFRNISEENIIS 183
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLIS 649
L+ + KEG ++ +ALK IA R++G LRDA TLEQ + G ++ +V E +GLIS
Sbjct: 184 KLKSVCEKEGFDVTYEALKKIAKRAEGGLRDALSTLEQVIRYTGGEVTEKIVDEALGLIS 243
Query: 650 DEKLVDLLDLALSAD 664
+E + ++ L+ D
Sbjct: 244 EETIEKFIEATLNND 258
>gi|281411913|ref|YP_003345992.1| DNA polymerase III, subunits gamma and tau [Thermotoga naphthophila
RKU-10]
gi|281373016|gb|ADA66578.1| DNA polymerase III, subunits gamma and tau [Thermotoga naphthophila
RKU-10]
Length = 478
Score = 176 bits (445), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 162/286 (56%), Gaps = 13/286 (4%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+TF ++V Q+ V +A+ A+ + V Y+F GP GTGKT+ ARI A++LNC+
Sbjct: 4 LYRKYRPKTFSEVVNQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNCE 63
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP-PSQYRIFV 529
+ + +PC C +C D G ++ E+ N + I + D V RP +Y++++
Sbjct: 64 NRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGIDEIRRIRD-AVGYRPMEGKYKVYI 122
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ L+ ++++A+ K ++ P VVF+L +++L+ +P IISRCQ F F + D I
Sbjct: 123 IDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVFEFRNIPDELIE 182
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLI 648
LQ +A EGIEID++AL IA R+ G LRDA LEQ+ + +I + V +GLI
Sbjct: 183 KRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKIDLETVHRALGLI 242
Query: 649 SDEKLVDLLDLALSADT--VNTV--------KNLRVIMETGVEPLA 684
+ + D ++ S D V TV K+ V+++ VE L
Sbjct: 243 PIQVVRDYVNAIFSGDVKRVFTVLDDVYYSGKDYEVLIQEAVEDLV 288
>gi|385813178|ref|YP_005849571.1| DNA polymerase III [Lactobacillus helveticus H10]
gi|323465897|gb|ADX69584.1| DNA polymerase III [Lactobacillus helveticus H10]
Length = 595
Score = 176 bits (445), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 104/336 (30%), Positives = 180/336 (53%), Gaps = 16/336 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF ++GQ + L NA+ R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDSVIGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +CI+ D+G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECANCIAADKGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKDD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ +++I +E I+ + AL +IA +DG +RDA L+Q LS + ++ ++ G
Sbjct: 183 LEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYQDALKITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD----ILAG--- 699
+ E + +L L + + +K + + G ++ +L + T I AG
Sbjct: 243 FAAKENIEKILLALLEQNPESALKLAQTELTQGASSKNILDELIDMATKSLMLIKAGDDR 302
Query: 700 -----SYDF---TKDRHRRKFFRRQPLSKEEMEKLR 727
S DF KD + F+R L+ + + LR
Sbjct: 303 QGTFLSEDFVQKVKDIPTKIFYRLITLANKALNDLR 338
>gi|58336713|ref|YP_193298.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
acidophilus NCFM]
gi|227903276|ref|ZP_04021081.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
acidophilus ATCC 4796]
gi|58254030|gb|AAV42267.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
acidophilus NCFM]
gi|227869081|gb|EEJ76502.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
acidophilus ATCC 4796]
Length = 596
Score = 176 bits (445), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 163/288 (56%), Gaps = 1/288 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF ++GQ + L NA+ R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +CI+ + G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECANCIAANEGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKED 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ +++I +E I+ + AL +IA +DG +RDA L+Q LS ++ ++ G
Sbjct: 183 LENRMKYILDQENIKYEVKALNVIAQVADGGMRDALSILDQLLSYEKDSVNYEDALQITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVIT 694
+ E + +L L ++VN +K + ++ G ++ +L + T
Sbjct: 243 FAARENIEKILLALLEQNSVNALKLAQESLDQGASSKNILDELIDMAT 290
>gi|419779473|ref|ZP_14305349.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK10]
gi|383186501|gb|EIC78971.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK10]
Length = 552
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 178/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + I KE I + DA+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 ITAHIHHILEKENISSEPDAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + +L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVSKALDSLNLLFENGKSMTRFVTDLLQYLRDLLVVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F LS+E + E +R A +L++ + L+
Sbjct: 302 THHSPVFMDNLALSQESLFEMIRIATVSLADMKASLQ 338
>gi|313885466|ref|ZP_07819216.1| DNA polymerase III, subunit gamma and tau [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619196|gb|EFR30635.1| DNA polymerase III, subunit gamma and tau [Eremococcus coleocola
ACS-139-V-Col8]
Length = 675
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 200/380 (52%), Gaps = 8/380 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+TF +L+GQN++ Q L NAVM +++ Y+F GP GTGKTS A+I A+A+
Sbjct: 3 YQALYRVWRPQTFDELIGQNVIQQTLKNAVMNQQLSHAYLFTGPRGTGKTSAAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NCQ+ + PC C +C + G+ +I E+ N E I DL DN+ + ++Y++
Sbjct: 63 NCQNPQNGNPCNECEACRLINEGQMSDIIEIDAASNNGVEEIRDLRDNVRYAASQAKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ +++A+ K ++ P V+FIL ++ +P IISR Q+F F ++ D D
Sbjct: 123 YIIDEVHMLTTGAFNALLKTLEEPPANVLFILATTEPHKIPATIISRTQRFDFHRIADKD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+I + +I + I D++AL++IA + G +RD+ L+Q LS ++SV ++ G
Sbjct: 183 LIDRMAYILDTDKIAYDQEALEIIARAARGGMRDSLSLLDQALSYNRDQVSVENALQVSG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+ ++ V L S + ++ L + G + + +L D+L + TK
Sbjct: 243 SMDQQEFVKYLMAVYSQQAQHALELLDQQLAQGKQANRFIEELVVFARDMLLSLH--TKT 300
Query: 707 RHRRKFFRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYV 764
L K+ + + + + L++A++Q+R S +L ++LA Q
Sbjct: 301 NQTLLKADELKLIKDTIPVDYYYRVIDQLNQAQQQMRFSTQADIFLQVMTVELAYGQPQT 360
Query: 765 LPSSSADTSFSHSPLDLENA 784
S+ +TS P D + A
Sbjct: 361 ASISTGETSI---PSDFQQA 377
>gi|306829660|ref|ZP_07462850.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus mitis
ATCC 6249]
gi|304428746|gb|EFM31836.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus mitis
ATCC 6249]
Length = 552
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 178/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVDGEPCNSCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + I KE I + DA+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 ITAHIHHILEKENISSEPDAIEIIARRAEGGMRDALSILDQALSLTQGNALTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + +L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALDSLNLLFENGKSMTRFVTDLLQYLRDLLVVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F LS+E + E +R A +L++ + L+
Sbjct: 302 THHSPVFMDNLALSQESLFEMIRLATVSLADMKASLQ 338
>gi|228949834|ref|ZP_04112044.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228809892|gb|EEM56303.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 553
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 205/371 (55%), Gaps = 25/371 (6%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY P F +L+GQN + Q + NA+ K Y+F GP GTGKT+ A++ A +L
Sbjct: 7 YQALYRKYRPTNFIELIGQNHIKQTIQNALKLAKFSHAYMFTGPRGTGKTTIAKLIATSL 66
Query: 468 NCQSLE-QPKPCGFCNSCISHDRGKSR-NIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC++L + +PC C+ C RG S ++ E+ N E I ++ + + + +Y
Sbjct: 67 NCENLNNEGEPCNECSQC-KAIRGNSHADVLEIDAASNNGVEQIREIREQVAYAPGTGKY 125
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ LS +++A+ K ++ P+ V+FIL ++ + +P IISRCQ+F F ++
Sbjct: 126 KVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKVPTTIISRCQRFDFRRIGP 185
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPL----- 640
DII L+ +A KE ++I+++AL+L+ + G +RDA LSL+ Q I+
Sbjct: 186 RDIIERLRHVAIKEEVKIEEEALQLLGMLAQGGMRDA------LSLMDQTIAFATNETIT 239
Query: 641 ---VQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD-I 696
V E+VG IS EK+ + L +T+ + + ++ G EP+ L+ L + D +
Sbjct: 240 KDDVSEVVGRISIEKIEACIGDLLKGNTIEILNLINQVILNGKEPIYLLEDLIGYLRDLV 299
Query: 697 LAGSYDFTKDR-----HRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLT 751
++ ++ +D KF+ + L + E+ K++ ++ L+E + +++ SN+ L
Sbjct: 300 ISKAFKVQEDNITTAILNNKFY--ELLEEGEIHKMQMMIRKLTEVKNEMKFSNNAQVSLE 357
Query: 752 AALLQLAPDQQ 762
L+QLA + Q
Sbjct: 358 VGLIQLATEAQ 368
>gi|417917293|ref|ZP_12560855.1| DNA polymerase III, subunit gamma and tau [Streptococcus
parasanguinis SK236]
gi|342830942|gb|EGU65267.1| DNA polymerase III, subunit gamma and tau [Streptococcus
parasanguinis SK236]
Length = 558
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 161/292 (55%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVARTLRQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C S G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQVNGEPCNDCYICESITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKLPD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I++ L+ I + EGI + DA+ +IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IVHHLESILATEGIAYEADAVHIIARRAEGGMRDALSILDQALSLTAGSELTTAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + L D + L +I + G +A +TD+L
Sbjct: 242 GSISLAALDQYVAAILDHDATAALDQLAIIFDNG-------KNMARFVTDLL 286
>gi|148269390|ref|YP_001243850.1| DNA polymerase III subunits gamma and tau [Thermotoga petrophila
RKU-1]
gi|147734934|gb|ABQ46274.1| DNA polymerase III, subunits gamma and tau [Thermotoga petrophila
RKU-1]
Length = 478
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 162/286 (56%), Gaps = 13/286 (4%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+TF ++V Q+ V +A+ A+ + V Y+F GP GTGKT+ ARI A++LNC+
Sbjct: 4 LYRKYRPKTFSEVVNQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNCE 63
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP-PSQYRIFV 529
+ + +PC C +C D G ++ E+ N + I + D V RP +Y++++
Sbjct: 64 NRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGIDEIRRIRD-AVGYRPMEGKYKVYI 122
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ L+ ++++A+ K ++ P VVF+L +++L+ +P IISRCQ F F + D I
Sbjct: 123 IDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVFEFRNIPDELIE 182
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLI 648
LQ +A EGIEID++AL IA R+ G LRDA LEQ+ + +I + V +GLI
Sbjct: 183 KRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKIDLETVHRALGLI 242
Query: 649 SDEKLVDLLDLALSADT--VNTV--------KNLRVIMETGVEPLA 684
+ + D ++ S D V TV K+ V+++ VE L
Sbjct: 243 PIQVVRDYVNAIFSGDVKRVFTVLDDVYYSGKDYEVLIQEAVEDLV 288
>gi|15643449|ref|NP_228495.1| DNA polymerase III, gamma and tau subunit [Thermotoga maritima
MSB8]
gi|403252424|ref|ZP_10918734.1| DNA polymerase III subunits gamma and tau [Thermotoga sp. EMP]
gi|418045144|ref|ZP_12683240.1| DNA polymerase III, subunits gamma and tau [Thermotoga maritima
MSB8]
gi|4981209|gb|AAD35768.1|AE001741_1 DNA polymerase III, gamma and tau subunit [Thermotoga maritima
MSB8]
gi|351678226|gb|EHA61373.1| DNA polymerase III, subunits gamma and tau [Thermotoga maritima
MSB8]
gi|402812437|gb|EJX26916.1| DNA polymerase III subunits gamma and tau [Thermotoga sp. EMP]
Length = 478
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 162/286 (56%), Gaps = 13/286 (4%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+TF ++V Q+ V +A+ A+ + V Y+F GP GTGKT+ ARI A++LNC+
Sbjct: 4 LYRKYRPKTFSEVVNQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNCE 63
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP-PSQYRIFV 529
+ + +PC C +C D G ++ E+ N + I + D V RP +Y++++
Sbjct: 64 NRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGIDEIRRIRD-AVGYRPMEGKYKVYI 122
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ L+ ++++A+ K ++ P VVF+L +++L+ +P IISRCQ F F + D I
Sbjct: 123 IDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVFEFRNIPDELIE 182
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLI 648
LQ +A EGIEID++AL IA R+ G LRDA LEQ+ + +I + V +GLI
Sbjct: 183 KRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKIDLETVHRALGLI 242
Query: 649 SDEKLVDLLDLALSADT--VNTV--------KNLRVIMETGVEPLA 684
+ + D ++ S D V TV K+ V+++ VE L
Sbjct: 243 PIQVVRDYVNAIFSGDVKRVFTVLDDVYYSGKDYEVLIQEAVEDLV 288
>gi|255018249|ref|ZP_05290375.1| hypothetical protein LmonF_12021 [Listeria monocytogenes FSL
F2-515]
Length = 289
Score = 175 bits (444), Expect = 1e-40, Method: Composition-based stats.
Identities = 90/284 (31%), Positives = 157/284 (55%), Gaps = 1/284 (0%)
Query: 415 YMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQ 474
+ P++F+D+VGQ V + L NA+++ K Y+F GP GTGKTS A+IFA+A+NC+
Sbjct: 1 FRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHD 60
Query: 475 PKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCD 534
+PC C C G ++ E+ N E I D+ + + + ++Y++++ D+
Sbjct: 61 GEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYIIDEVH 120
Query: 535 TLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQW 594
LS +++A+ K ++ P+ V+FIL ++ LP IISR Q+F F ++ DII L++
Sbjct: 121 MLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDIIGRLKF 180
Query: 595 IASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVGLISDEKL 653
I +E I D+ AL ++A ++G +RDA L+Q+ G + ++V E+ G ++ L
Sbjct: 181 ILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSVAQNLL 240
Query: 654 VDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
L+ A D + L ++ G +P+ L+ L D+L
Sbjct: 241 TKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVL 284
>gi|158335444|ref|YP_001516616.1| DNA polymerase III subunits gamma and tau [Acaryochloris marina
MBIC11017]
gi|158305685|gb|ABW27302.1| DNA polymerase III gamma and tau subunits [Acaryochloris marina
MBIC11017]
Length = 688
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 187/363 (51%), Gaps = 15/363 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+ F DLVGQ+ +A L+NA+ ++ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQVFADLVGQDAIATTLTNAIEFERIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + + P PCG C+ C G S ++ E+ N ++I DL++ + ++
Sbjct: 63 NCLNSQTPTQTPCGTCSVCQEVALGTSLDVIEIDAASNTGVDNIRDLIERAQFAPVQCRF 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+I+ D+ LS +++A+ K ++ P RVVFIL ++ + IISRCQ+F F ++
Sbjct: 123 KIYCLDEVHMLSTAAFNALLKTLEEPPDRVVFILATTDPQRVLPTIISRCQRFDFRRIAL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+I L IA +E I I A++LIA + G LRDAE L+QLSLL I V +LV
Sbjct: 183 DPMIQHLTHIAEQESIAITPTAVELIAQVAQGGLRDAESLLDQLSLLSGEIDNTQVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G + ++ L+ LL + V+ +++ G EPL ++ LA D+L T
Sbjct: 243 GSVPEQALLALLQAIIEQQPALMVERTHALLDRGREPLTVLQNLAGFYRDLLIAKTAPT- 301
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKT---------LSEAEKQLRMSNDKLTWLTAALLQ 756
RR + ++ +L Q + L E Q++ S WL +LL
Sbjct: 302 ---RRDLVAITAPTWTDLCQLAQQFEVDDILAKQQHLRNCETQIKNSTQPRLWLEVSLLG 358
Query: 757 LAP 759
L P
Sbjct: 359 LLP 361
>gi|295692238|ref|YP_003600848.1| DNA polymerase iii, gamma/tau subunit [Lactobacillus crispatus ST1]
gi|295030344|emb|CBL49823.1| DNA polymerase III, gamma/tau subunit [Lactobacillus crispatus ST1]
Length = 601
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 136/222 (61%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF ++GQ + L NA+ R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +CI+ D+G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECANCIAADQGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKED 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL 629
+ +++I +E I+ + AL +IA +DG +RDA L+QL
Sbjct: 183 LEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQL 224
>gi|456013027|gb|EMF46702.1| DNA polymerase III subunits gamma and tau [Planococcus
halocryophilus Or1]
Length = 591
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/382 (29%), Positives = 197/382 (51%), Gaps = 13/382 (3%)
Query: 401 GDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCA 460
G+N+ +Q + Y P++F ++ GQ V Q L NA++ K Y+F GP GTGKTS A
Sbjct: 11 GENKLA-YQAFYRVYRPQSFSEMTGQMHVKQTLQNALLYNKTTHAYLFSGPRGTGKTSAA 69
Query: 461 RIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR 520
+IFA+ALNC+ +PC C SC S + G + ++ E N E + ++++ + S
Sbjct: 70 KIFAKALNCEQAPTAEPCNECTSCKSINEGSNTDVIEFDAASNSRVEEMREIIEKVRFSP 129
Query: 521 PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFF 580
S+++I++ D+ LS +++A+ K ++ P VVFIL ++ LP IISRCQ+F F
Sbjct: 130 ANSRFKIYIIDEVHMLSNSAFNALLKTLEEPPEHVVFILATTEPHKLPLTIISRCQRFDF 189
Query: 581 PKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVP 639
DI+ + + + I ++ LK+IA + G +RDA L+Q +S G ++V
Sbjct: 190 KSHTQVDIVSRMVEVLTDAEIPYNEQVLKIIAQAAAGGMRDALSLLDQVVSFSGDEMTVE 249
Query: 640 LVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-- 697
+ G +S + + + L+ D + L ++ G +P+ L+ T D+L
Sbjct: 250 DALLVTGSVSQDVFYGIAEALLAKDIGQALTLLEQLVRDGKDPVRLVEDFITFFRDLLLI 309
Query: 698 ---AGSYDFTK-DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAA 753
+D + H +F + ++ E L + LS+ ++++R SN ++ A
Sbjct: 310 QTAPDLHDMLELAAHEPRF--EELANRFEPSTLYNWIDILSKTQQEMRFSNHTKIYMETA 367
Query: 754 LLQLAPDQQYVLPSSSADTSFS 775
LL++A Q +P+ S ++ S
Sbjct: 368 LLKMA---QADVPTQSEASAVS 386
>gi|195977810|ref|YP_002123054.1| DNA polymerase III subunits gamma and tau [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|195974515|gb|ACG62041.1| DNA polymerase III gamma/tau subunit DnaX [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 558
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 160/292 (54%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFAEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVKGEPCNHCDICRDITTGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K A
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPSDNVVFILATTELHKIPATILSRVQRFEFKAIKQAA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSL-LGQRISVPLVQELV 645
I L I KEGI + +AL LIA R++G +RDA L+Q LSL R+++ + +E+
Sbjct: 182 ICEHLAAILDKEGIAYETEALHLIARRAEGGMRDALSILDQALSLSFDNRVTLAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + + T + NL I ++G + L T D+L
Sbjct: 242 GSISISALDDYVQHLIRQKTSQALANLETIYDSGKSMSRFATDLLTYFRDLL 293
>gi|423320453|ref|ZP_17298325.1| DNA polymerase III, subunit gamma and tau [Lactobacillus crispatus
FB077-07]
gi|405605057|gb|EKB78124.1| DNA polymerase III, subunit gamma and tau [Lactobacillus crispatus
FB077-07]
Length = 601
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/411 (28%), Positives = 210/411 (51%), Gaps = 24/411 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF ++GQ + L NA+ R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +CI+ D+G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECANCIAADQGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKED 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ +++I +E I+ + AL +IA +DG +RDA L+Q LS + ++ ++ G
Sbjct: 183 LEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYDDALQITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK- 705
E + +L L+ D ++ + + G ++ + I D+ S K
Sbjct: 243 FADRENIEKILLALLNQDAGQALQFTQDELAKGASSKNILDE----IIDLTTKSLLIVKT 298
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQA--------LKTLSEAEKQLRMSNDKLTWLTAALLQ- 756
D ++++ F L+K+ +EK++ + + A LR +N + L L++
Sbjct: 299 DENKQETF----LTKDFIEKIKSVSTDSYYRLINLANNALNDLRYTNQQQIPLEVFLVEA 354
Query: 757 --LAPDQQYVLPSSSADTSFSHSPLDLE---NAGGRGMTRKGGERAEISNK 802
AP Q P+ + + DL+ A + + + +E+SNK
Sbjct: 355 SSTAPVQTSAAPAKTTPAQPAQGNTDLQAELAALKKQVVDLTQKLSEVSNK 405
>gi|293379950|ref|ZP_06626051.1| DNA polymerase III, subunit gamma and tau [Lactobacillus crispatus
214-1]
gi|290923463|gb|EFE00365.1| DNA polymerase III, subunit gamma and tau [Lactobacillus crispatus
214-1]
Length = 601
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/411 (28%), Positives = 210/411 (51%), Gaps = 24/411 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF ++GQ + L NA+ R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +CI+ D+G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECANCIAADQGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKED 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ +++I +E I+ + AL +IA +DG +RDA L+Q LS + ++ ++ G
Sbjct: 183 LEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYDDALQITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK- 705
E + +L L+ D ++ + + G ++ + I D+ S K
Sbjct: 243 FADRENIEKILLALLNQDAGQALQFTQDELAKGASSKNILDE----IIDLTTKSLLIVKT 298
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQA--------LKTLSEAEKQLRMSNDKLTWLTAALLQ- 756
D ++++ F L+K+ +EK++ + + A LR +N + L L++
Sbjct: 299 DENKQETF----LTKDFIEKIKSVSTDSYYRLINLANNALNDLRYTNQQQIPLEVFLVEA 354
Query: 757 --LAPDQQYVLPSSSADTSFSHSPLDLE---NAGGRGMTRKGGERAEISNK 802
AP Q P+ + + DL+ A + + + +E+SNK
Sbjct: 355 SSTAPVQTSAAPAKTTPAQPAQGNTDLQAELAALKKQVVDLTQKLSEVSNK 405
>gi|387879834|ref|YP_006310137.1| DNA-directed DNA polymerase III chain [Streptococcus parasanguinis
FW213]
gi|386793284|gb|AFJ26319.1| DNA-directed DNA polymerase III chain [Streptococcus parasanguinis
FW213]
Length = 558
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 162/292 (55%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVARTLRQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C S G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQVNGEPCNDCYICESITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKLPD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I+ L+ I + EGI + DA+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IVQHLESILATEGIAYEADAVQIIARRAEGGMRDALSILDQALSLTAGSELTTVIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + L+ D + L +I + G +A +TD+L
Sbjct: 242 GSISLTALDQYVAAILAHDATAALDQLAIIFDNG-------KNMARFVTDLL 286
>gi|389819536|ref|ZP_10209387.1| DNA polymerase III subunit gamma/tau [Planococcus antarcticus DSM
14505]
gi|388463256|gb|EIM05621.1| DNA polymerase III subunit gamma/tau [Planococcus antarcticus DSM
14505]
Length = 577
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/358 (30%), Positives = 181/358 (50%), Gaps = 9/358 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q + Y P++F D+ GQ V Q L NA++ K Y+F GP GTGKTS A+IFA+AL
Sbjct: 3 YQAFYRVYRPQSFSDMTGQIHVKQTLQNALLYNKTTHAYLFSGPRGTGKTSAAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC S + G + ++ E N E + ++++ + S S+++I
Sbjct: 63 NCEQAPAAEPCNECASCRSINEGSNTDVIEFDAASNSRVEEMREIIEKVRFSPANSRFKI 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ LP IISRCQ+F F D
Sbjct: 123 YIIDEVHMLSNSAFNALLKTLEEPPEHVVFILATTEPHKLPLTIISRCQRFDFKSHTQVD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + + + I ++ LK+IA + G +RDA L+Q +S G ++V + G
Sbjct: 183 IVSRMVEVLTDAKIPYNEQVLKIIAQAAAGGMRDALSLLDQVVSFSGDEMTVEDALLVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
IS + + + L+ D + L ++ G +P+ L+ T D+L D
Sbjct: 243 SISQDMFYGIAEALLAKDIGQALTLLEKLVRDGKDPVRLVEDFITFFRDLLL--IQTAPD 300
Query: 707 RHRRKFFRRQPLSKEEMEK------LRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
H EE+ K L + LS+ ++++R SN ++ ALL++A
Sbjct: 301 LHDMLELATHEPRFEELAKRFEPATLYTWIDVLSKTQQEMRFSNHTKIYMETALLKMA 358
>gi|373461447|ref|ZP_09553187.1| DNA polymerase III, subunit gamma and tau [Prevotella maculosa OT
289]
gi|371952405|gb|EHO70244.1| DNA polymerase III, subunit gamma and tau [Prevotella maculosa OT
289]
Length = 598
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 190/354 (53%), Gaps = 12/354 (3%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS-L 472
KY P TF +VGQ+ + L NAV RK+ Y+F GP G GKT+CARIFA+A+NC++
Sbjct: 10 KYRPMTFDSVVGQHALTTTLKNAVKSRKLAHAYLFCGPRGVGKTTCARIFAKAINCENPS 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVF 530
E + C C SC + + +S NI E+ N E+I L++ T PP +Y++F+
Sbjct: 70 EDGEACNACESCKAFNEQRSYNIFELDAASNNSVENIKSLMEQ--TRIPPQVGRYKVFII 127
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M + I
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVGNTIA 187
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+ +A KEGI +++AL +IA ++DG +RDA +Q + Q I+ V E + ++
Sbjct: 188 HLKTVADKEGITYEEEALAVIAEKADGGMRDALSIFDQAASFCQGNITYQKVIEDLNVLD 247
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT----- 704
+ ++D AL + + +++ G + L++ LA + ++L + T
Sbjct: 248 ADNYFQIVDDALQNKVSDIMLLFNNVLKKGFDGGNLVTGLAAHVRNVLMARDEQTLPLLE 307
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ +R+ + Q K + L QALK L++ + + S++K + L+Q+A
Sbjct: 308 TSQQQREKYHEQA-KKCPVNFLYQALKVLNQCDINYKQSSNKRLLVELTLIQMA 360
>gi|238855363|ref|ZP_04645675.1| DNA polymerase III subunit gamma/tau [Lactobacillus jensenii 269-3]
gi|260664921|ref|ZP_05865772.1| DNA polymerase III gamma-tau [Lactobacillus jensenii SJ-7A-US]
gi|238832024|gb|EEQ24349.1| DNA polymerase III subunit gamma/tau [Lactobacillus jensenii 269-3]
gi|260561404|gb|EEX27377.1| DNA polymerase III gamma-tau [Lactobacillus jensenii SJ-7A-US]
Length = 593
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 191/358 (53%), Gaps = 14/358 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF +VGQ + L NA++R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDSVVGQEAITDTLKNAIIRNKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +C + D G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCLNLQDGEPCNECENCKAADSGAMPDIIEIDAASNNGVDEIREIRDKVKYAPTQGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ +
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKQN 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +E I + AL++IA +DG +RD+ L+Q LS +++ + G
Sbjct: 183 LVDRMKFILEQENIPYEDSALQVIAQVADGGMRDSLSILDQLLSFEKEKVEYKDALNITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD---ILAGSYD- 702
+ E L L+ ++ +++ G L+S+L ++ T+ +L + D
Sbjct: 243 YAARETTEQLFLNLLNQKVSESLDLSHKLLQDGATAKNLLSELISLATETMLVLKANKDS 302
Query: 703 --FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
TKD F Q + E ++ Q + +EA LR +N + L L+++A
Sbjct: 303 EFLTKD------FTNQITTVPE-KRYFQLITAANEALNDLRFTNQEEIPLDVFLVKVA 353
>gi|170288047|ref|YP_001738285.1| DNA polymerase III subunits gamma and tau [Thermotoga sp. RQ2]
gi|170175550|gb|ACB08602.1| DNA polymerase III, subunits gamma and tau [Thermotoga sp. RQ2]
Length = 478
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 162/286 (56%), Gaps = 13/286 (4%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+TF ++V Q+ V +A+ A+ + V Y+F GP GTGKT+ ARI A++LNC+
Sbjct: 4 LYRKYRPKTFSEVVDQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNCE 63
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP-PSQYRIFV 529
+ + +PC C +C D G ++ E+ N + I + D V RP +Y++++
Sbjct: 64 NRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGIDEIRRIRD-AVGYRPMEGKYKVYI 122
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ L+ ++++A+ K ++ P VVF+L +++L+ +P IISRCQ F F + D I
Sbjct: 123 IDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVFEFRNIPDELIE 182
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLI 648
LQ +A EGIEID++AL IA R+ G LRDA LEQ+ + +I + V +GLI
Sbjct: 183 KRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKIDLETVHRALGLI 242
Query: 649 SDEKLVDLLDLALSADT--VNTV--------KNLRVIMETGVEPLA 684
+ + D ++ S D V TV K+ V+++ VE L
Sbjct: 243 PIQVVRDYVNAIFSGDVKRVFTVLDDVYYSGKDYEVLIQEAVEDLV 288
>gi|423318231|ref|ZP_17296128.1| DNA polymerase III, subunit gamma and tau [Lactobacillus crispatus
FB049-03]
gi|405596720|gb|EKB70053.1| DNA polymerase III, subunit gamma and tau [Lactobacillus crispatus
FB049-03]
Length = 601
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 136/222 (61%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF ++GQ + L NA+ R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +CI+ D+G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECANCIAADQGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKED 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL 629
+ +++I +E I+ + AL +IA +DG +RDA L+QL
Sbjct: 183 LEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQL 224
>gi|228988775|ref|ZP_04148851.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228770955|gb|EEM19445.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 548
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 205/371 (55%), Gaps = 25/371 (6%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY P F +L+GQN + Q + NA+ K Y+F GP GTGKT+ A++ A +L
Sbjct: 2 YQALYRKYRPTNFIELIGQNHIKQTIQNALKLAKFSHAYMFTGPRGTGKTTIAKLIATSL 61
Query: 468 NCQSLE-QPKPCGFCNSCISHDRGKSR-NIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC++L + +PC C+ C RG S ++ E+ N E I ++ + + + +Y
Sbjct: 62 NCENLNNEGEPCNECSQC-KAIRGNSHADVLEIDAASNNGVEQIREIREQVAYAPGTGKY 120
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ LS +++A+ K ++ P+ V+FIL ++ + +P IISRCQ+F F ++
Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKIPATIISRCQRFDFRRIGP 180
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPL----- 640
DII L+ +A KE ++I+++AL+L+ + G +RDA LSL+ Q I+
Sbjct: 181 RDIIERLRHVAIKEEVKIEEEALQLLGMLAQGGMRDA------LSLMDQTIAFATNETIT 234
Query: 641 ---VQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD-I 696
V E+VG IS EK+ + L +T+ + + ++ G EP+ L+ L + D +
Sbjct: 235 KDDVSEVVGRISIEKIEACIGDLLKGNTIEILNLINQVILNGKEPIYLLEDLIGYLRDLV 294
Query: 697 LAGSYDFTKDR-----HRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLT 751
++ ++ +D KF+ + L + E+ K++ ++ L+E + +++ SN+ L
Sbjct: 295 ISKAFKVQEDNITTAILNNKFY--ELLEEGEIYKMQMMIRKLTEVKNEMKFSNNAQVSLE 352
Query: 752 AALLQLAPDQQ 762
L+QLA + Q
Sbjct: 353 VGLIQLATEAQ 363
>gi|325680624|ref|ZP_08160166.1| DNA polymerase III, subunit gamma and tau [Ruminococcus albus 8]
gi|324107694|gb|EGC01968.1| DNA polymerase III, subunit gamma and tau [Ruminococcus albus 8]
Length = 534
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/359 (30%), Positives = 188/359 (52%), Gaps = 11/359 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+TF D+V Q + L N ++ K Y+F G GTGKT+CARIFA+A+
Sbjct: 2 YQALYRKWRPKTFDDVVSQPHITTTLKNQIIGGKTAHAYLFTGSRGTGKTTCARIFAKAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + PC C C + D G +I E+ N I +L + ++ + +Y+I
Sbjct: 62 NCEHGKDGMPCCECEICKAADNGSLGDIIEIDAASNASVNDIRELREGVMFTPEMCKYKI 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V FIL ++ + +P I+SRCQ F F ++K D
Sbjct: 122 YIIDEVHMLSVGAFNALLKTMEEPPPHVKFILATTEIQKVPATIVSRCQHFDFNRIKTED 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGL 647
I+ L +IA +EG + +DA +LIA SDG +RDA L+Q I++ V G+
Sbjct: 182 IVARLSYIAGQEGFTLHEDAAELIARLSDGGMRDALSLLDQCVAFSDDITLDTVSNASGI 241
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVI--METGVEPLA--LMSQLATVITDILAGSYDF 703
+ L D+L+ + V +K + + M ++ LA L+ Q+ V +LA + D
Sbjct: 242 AGRDYLFDILESIADKNAVEALKKISELHAMSKDLKVLAGELLEQMRNV---MLAATIDN 298
Query: 704 TKDRHR---RKFFRRQPLSKE-EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
KD + R + ++K+ +E++ + L E+ ++ S K L +++L
Sbjct: 299 GKDLITCLPEEMVRIEGIAKKMSLEEILGCISLLQESSERFARSTSKRIELEMCIIRLC 357
>gi|255974819|ref|ZP_05425405.1| DNA-directed DNA polymerase III [Enterococcus faecalis T2]
gi|307278710|ref|ZP_07559778.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0860]
gi|255967691|gb|EET98313.1| DNA-directed DNA polymerase III [Enterococcus faecalis T2]
gi|306504650|gb|EFM73852.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0860]
Length = 586
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 207/391 (52%), Gaps = 12/391 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ + Q L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C +C++ G+ ++ E+ N E I D+ D + ++Y++
Sbjct: 63 NCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I + ++ ++ AL +I ++G +RDA L+Q +S +++++ ++ G
Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ E + + ++ D ++ L I+ G E + L ++L A
Sbjct: 243 SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRNLLMYQQAPKLL 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA---- 758
K + F ++ ++ EK+ Q ++ LS+ + ++R +N+ +L A ++LA
Sbjct: 303 AEKAGTLTEAF-KELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKTVQ 361
Query: 759 PDQQYVLPSSSADTSFSHSP--LDLENAGGR 787
P++ +++ D S +P DL+N G+
Sbjct: 362 PNKHNTPETTNQDGSAEGNPELADLQNQIGQ 392
>gi|322375394|ref|ZP_08049907.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. C300]
gi|321279657|gb|EFX56697.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. C300]
Length = 554
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/337 (31%), Positives = 180/337 (53%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I +Q I SKE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKDHIQTILSKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNALTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + +L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVSKALDSLNLLFENGKSMTRFVTDLLQYLRDLLVVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F LS+E + E +R A +L++ + L+
Sbjct: 302 THHSPIFMDNLALSQENLFEMIRIATVSLADMKASLQ 338
>gi|73748424|ref|YP_307663.1| DNA polymerase III subunits gamma and tau [Dehalococcoides sp.
CBDB1]
gi|73660140|emb|CAI82747.1| putative DNA polymerase III, gamma and tau subunits
[Dehalococcoides sp. CBDB1]
Length = 570
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 197/374 (52%), Gaps = 18/374 (4%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q +K+ P+T DLVGQ VA L NA+ ++ Y+F GP GTGKTS RI A+A+N
Sbjct: 7 QVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVN 66
Query: 469 CQSLE-QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
C + + + +PC C C+S G S +I E+ N + I +L + + S + Y++
Sbjct: 67 CTTNQGKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKV 126
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS + +A+ K ++ P RV+FIL ++ + + I+SRCQ+F F ++ D
Sbjct: 127 YIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLVD 186
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVG 646
+ L I+ EGI ++ +ALKLIA + GS RD E L+Q+ + G IS+ VQ +G
Sbjct: 187 MTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALG 246
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL------AGS 700
+ DE++ L + L D N +K L ++ G++ +L + I+ S
Sbjct: 247 ISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGAESS 306
Query: 701 YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLT--AALLQLA 758
+ T D ++ + ++ +E + +A+K S QL S+D + L+ AL+ +
Sbjct: 307 LELTAD-EKKALQKVSGITN--LENITKAIKAFS----QLDFSSDTASSLSFELALIDAS 359
Query: 759 PDQQYV-LPSSSAD 771
D+ V LP+ D
Sbjct: 360 LDENTVPLPNKPKD 373
>gi|293365608|ref|ZP_06612317.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus oralis
ATCC 35037]
gi|307703557|ref|ZP_07640499.1| DNA polymerase III, subunits gamma and tau [Streptococcus oralis
ATCC 35037]
gi|291315976|gb|EFE56420.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus oralis
ATCC 35037]
gi|307622964|gb|EFO01959.1| DNA polymerase III, subunits gamma and tau [Streptococcus oralis
ATCC 35037]
Length = 552
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 178/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + I KE I + DA+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 ITAHIHHILEKEHISSEPDAVEIIARRAEGGMRDALSILDQALSLTQGNALTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + +L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVSKALDSLNLLFENGKSMTRFVTDLLQYLRDLLVVQTGSEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F LS+E + E +R A +L++ + L+
Sbjct: 302 THHSPVFMDNLALSQESLFEMIRIATVSLADMKASLQ 338
>gi|419818324|ref|ZP_14342383.1| DNA polymerase III subunits gamma and tau, partial [Streptococcus
sp. GMD4S]
gi|404463436|gb|EKA09077.1| DNA polymerase III subunits gamma and tau, partial [Streptococcus
sp. GMD4S]
Length = 524
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 178/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + I KE I + DA+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 ITAHIHHILEKENISSEPDAVEIIARRAEGGMRDALSILDQALSLTQGNALTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + +L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALDSLNLLFENGKSMTRFVTDLLQYLRDLLVVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F LS+E + E +R A +L++ + L+
Sbjct: 302 THHSPVFMDNLALSQESLFEMIRIATVSLADMKASLQ 338
>gi|419780141|ref|ZP_14305991.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK100]
gi|383185300|gb|EIC77796.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK100]
Length = 552
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 178/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + I KE I + DA+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 ITAHIHHILEKEHISSEPDAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + +L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVSKALDSLNLLFENGKSMTRFVTDLLQYLRDLLVVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F LS+E + E +R A +L++ + L+
Sbjct: 302 THHSPVFMDNLALSQESLFEMIRIATVSLADMKASLQ 338
>gi|424756765|ref|ZP_18184567.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
R508]
gi|402408159|gb|EJV40648.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
R508]
Length = 586
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 192/356 (53%), Gaps = 6/356 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ + Q L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C +C++ G+ ++ E+ N E I D+ D + ++Y++
Sbjct: 63 NCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I + ++ ++ AL +I ++G +RDA L+Q +S +++++ ++ G
Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ E + + ++ D +++L I+ G E + L D+L A
Sbjct: 243 SLTYEMMDHYIQCCVAGDVERALESLESILGEGKEARRFLEDLLLYCRDLLMYQQAPKLL 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
K + F ++ ++ EK+ Q ++ LS+ + ++R +N+ +L A ++LA
Sbjct: 303 AEKAGTLTEAF-KELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLA 357
>gi|282881347|ref|ZP_06290026.1| DNA polymerase III, subunit gamma and tau [Prevotella timonensis
CRIS 5C-B1]
gi|281304753|gb|EFA96834.1| DNA polymerase III, subunit gamma and tau [Prevotella timonensis
CRIS 5C-B1]
Length = 610
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/355 (31%), Positives = 183/355 (51%), Gaps = 14/355 (3%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC-QSL 472
KY P +F +VGQ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC
Sbjct: 27 KYRPTSFDTVVGQTALITTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCLHPT 86
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVF 530
+ C C SC + + +S NI E+ N E+I L+D T PP +Y++F+
Sbjct: 87 ADGEACNECESCKAFNEQRSYNIFELDAASNNSVENIKSLMDQ--TRIPPQVGKYKVFII 144
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M DII
Sbjct: 145 DEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTTNDIIN 204
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+ +A KEGI + +AL +IA ++DG +RDA +Q + Q I+ V E + ++
Sbjct: 205 HLKKVAEKEGITYEDEALNIIAEKADGGMRDALSVFDQAASFCQGNITYAKVTEDLNVLD 264
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT----- 704
+ +++DL L + + L I+ G ++ LA+ I ++L T
Sbjct: 265 TDNYFNIVDLCLQNKVSDAMLLLNSIIAKGFAGGHFINGLASHIRNVLMAKDAQTLPLLE 324
Query: 705 -KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ R+K+ + K L QALK L++ + R S++K + L+Q+A
Sbjct: 325 VSQQQRQKY--EEQAKKCPTTFLYQALKLLNQCDINYRQSSNKRLLVEITLIQIA 377
>gi|452203428|ref|YP_007483561.1| DNA polymerase III subunit gamma and tau [Dehalococcoides mccartyi
DCMB5]
gi|452110487|gb|AGG06219.1| DNA polymerase III subunit gamma and tau [Dehalococcoides mccartyi
DCMB5]
Length = 570
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 197/374 (52%), Gaps = 18/374 (4%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q +K+ P+T DLVGQ VA L NA+ ++ Y+F GP GTGKTS RI A+A+N
Sbjct: 7 QVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVN 66
Query: 469 CQSLE-QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
C + + + +PC C C+S G S +I E+ N + I +L + + S + Y++
Sbjct: 67 CTTNQGKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKV 126
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS + +A+ K ++ P RV+FIL ++ + + I+SRCQ+F F ++ D
Sbjct: 127 YIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLVD 186
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVG 646
+ L I+ EGI ++ +ALKLIA + GS RD E L+Q+ + G IS+ VQ +G
Sbjct: 187 MTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALG 246
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL------AGS 700
+ DE++ L + L D N +K L ++ G++ +L + I+ S
Sbjct: 247 ISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGAESS 306
Query: 701 YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLT--AALLQLA 758
+ T D ++ + ++ +E + +A+K S QL S+D + L+ AL+ +
Sbjct: 307 LELTAD-EKKALQKVSGITN--LENITKAIKAFS----QLDFSSDTASSLSFELALIDAS 359
Query: 759 PDQQYV-LPSSSAD 771
D+ V LP+ D
Sbjct: 360 LDENTVPLPNKPKD 373
>gi|406586251|ref|ZP_11061184.1| DNA polymerase III subunits gamma and tau [Streptococcus sp. GMD1S]
gi|419814070|ref|ZP_14338874.1| DNA polymerase III subunits gamma and tau [Streptococcus sp. GMD2S]
gi|404472299|gb|EKA16730.1| DNA polymerase III subunits gamma and tau [Streptococcus sp. GMD2S]
gi|404474200|gb|EKA18518.1| DNA polymerase III subunits gamma and tau [Streptococcus sp. GMD1S]
Length = 552
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 178/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + I KE I + DA+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 ITAHIHHILEKENISSEPDAVEIIARRAEGGMRDALSILDQALSLTQGNALTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + +L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALDSLNLLFENGKSMTRFVTDLLQYLRDLLVVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F LS+E + E +R A +L++ + L+
Sbjct: 302 THHSPVFMDNLALSQESLFEMIRIATVSLADMKASLQ 338
>gi|304372902|ref|YP_003856111.1| DNA polymerase III gamma and tau subunit [Mycoplasma hyorhinis
HUB-1]
gi|304309093|gb|ADM21573.1| DNA polymerase III gamma and tau subunit [Mycoplasma hyorhinis
HUB-1]
Length = 712
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/353 (32%), Positives = 191/353 (54%), Gaps = 20/353 (5%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC-QSL 472
KY P T D+VGQ+ + Q L N + ++ Y+F GP GTGKTS A+IFA LNC
Sbjct: 11 KYRPTTLVDVVGQDFIIQTLKNIISTNQIFHAYLFSGPRGTGKTSVAKIFATTLNCSHKT 70
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ PC C +++ S +I E+ N + I +L++N+ SQY+I++ D+
Sbjct: 71 DLFIPCQKCQDSVNN----SFDIIEMDGASNNGVDEIRELINNVNNLPTNSQYKIYIIDE 126
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ P+ V+FIL ++ +P I+SR Q+F F K+ + +I+ L
Sbjct: 127 VHMLSSSAFNAFLKTLEEPPKYVIFILATTEAHKIPLTILSRVQRFNFRKISEKEIVSRL 186
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLISDE 651
+++ KE I +K+AL IA S GSLRDA +EQL+ + +I + V+ L GL S +
Sbjct: 187 EYVLEKEEISYEKEALWAIAQLSSGSLRDALAMVEQLNNFSRSKIHMIDVENLFGLTSTQ 246
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRK 711
KL++LL + + + I+E G P L+S L +++ + + Y TKD +
Sbjct: 247 KLINLLKEIHNENLQQISHLISTILEQGANPNILISSLISLVKNFII--YQKTKDITLLE 304
Query: 712 FFRRQPLSKEEMEKLRQALKT-------LSEAEKQLRMSNDKLTWLTAALLQL 757
F S E++EK+ +L T L + +K+L SN+ + A+++L
Sbjct: 305 GF-----SVEQIEKIPLSLLTAYKLQDVLVKTQKELISSNNPAMSIQIAIIKL 352
>gi|315644459|ref|ZP_07897592.1| DNA polymerase III, subunits gamma and tau [Paenibacillus vortex
V453]
gi|315280209|gb|EFU43502.1| DNA polymerase III, subunits gamma and tau [Paenibacillus vortex
V453]
Length = 573
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 189/380 (49%), Gaps = 14/380 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H L + + P++F D+VGQ + Q L NA+ ++V Y+F GP GTGKTS A+I A+A+
Sbjct: 3 HIALYRAWRPQSFGDMVGQQHIIQTLQNAIREQRVSHAYLFSGPRGTGKTSAAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C G +++E+ N E I DL + + + + ++
Sbjct: 63 NCEHGPAEEPCNECEACRRITSGAVMDVQEIDAASNRGVEEIRDLREKVKYAPTEVRRKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+FIL ++ LP IISRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPAHVMFILATTEPHRLPATIISRCQRFDFRRVSLDE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVG 646
LQ I +EGI D +AL+ IA SDG +RDA L+Q+ S G +S V ++ G
Sbjct: 183 QTGRLQQICGEEGITADHEALQYIARLSDGGMRDALSILDQIASFTGGTVSYQQVMDMTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
I+ E+ L D ++ + M+ G M L D+L D
Sbjct: 243 GIASEQFGRLASAVKQGDAGLVLQIVEQFMQEGKSADKCMENLLYYFRDLLMIKMVPDAD 302
Query: 707 RHRRKFFRRQPLSKEEM------EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760
+ + P +EM ++L Q + TLS + +++ ++ T ALL+L+
Sbjct: 303 KLTDRVLN--PAEFQEMANAFSRDELFQMIDTLSRYQSEMKYASQPQTLFEVALLKLSG- 359
Query: 761 QQYVLPSSSADTSFSHSPLD 780
+P S+ + +H D
Sbjct: 360 ----IPQSAGGATSAHGTAD 375
>gi|145219538|ref|YP_001130247.1| DNA polymerase III subunits gamma and tau [Chlorobium
phaeovibrioides DSM 265]
gi|145205702|gb|ABP36745.1| DNA polymerase III, subunits gamma and tau [Chlorobium
phaeovibrioides DSM 265]
Length = 612
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 156/294 (53%), Gaps = 12/294 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q + +KY P F D+ Q + + + N++ +VG Y+F G G GKT+ AR+FA+AL
Sbjct: 3 YQVIARKYRPAKFADITAQEHITRTIQNSLRMERVGHGYIFSGLRGVGKTTAARVFAKAL 62
Query: 468 NCQSL--------EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTS 519
NCQ + + +PCG C SC D G S NI E N + I L DN+
Sbjct: 63 NCQRMIEDADWLRDVTEPCGECESCRDFDAGTSMNIAEFDAASNNSVDDIRTLRDNVRYG 122
Query: 520 RPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFF 579
+YR+++ D+ LS +++A K ++ P +FI ++ L +P I SRCQ+F
Sbjct: 123 PQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFN 182
Query: 580 FPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL----GQR 635
F ++ I LQ I EGI++D DAL+L++ ++ GS+RDA+ L+Q+ G+
Sbjct: 183 FKRIPLDAIQTQLQGICEAEGIKVDADALQLVSRKAQGSMRDAQSILDQVIAFSSESGEG 242
Query: 636 ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689
IS V+EL+ I DE+L + D + D ++ + ++ G + + +L
Sbjct: 243 ISYQGVRELLNYIDDEQLFAVTDAITAHDAPGMIEVAQFVISNGYDEQDFLEKL 296
>gi|403514389|ref|YP_006655209.1| DNA polymerase III subunits gamma and tau [Lactobacillus helveticus
R0052]
gi|403079827|gb|AFR21405.1| DNA polymerase III subunits gamma and tau [Lactobacillus helveticus
R0052]
Length = 595
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/336 (30%), Positives = 179/336 (53%), Gaps = 16/336 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF ++GQ + L NA+ R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDSVIGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +CI+ +G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECANCIAAYKGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKED 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ +++I +E I+ + AL +IA +DG +RDA L+Q LS + ++ E+ G
Sbjct: 183 LEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYQDALEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD----ILAG--- 699
+ E + +L L + + +K + + G ++ +L + T I AG
Sbjct: 243 FAAKENIEKILLALLEKNPESALKLAQTELTQGASSKNILDELIDMATKSLMLIKAGDDR 302
Query: 700 -----SYDF---TKDRHRRKFFRRQPLSKEEMEKLR 727
S DF KD + F+R L+ + + LR
Sbjct: 303 QGTFLSEDFVQKVKDIPTKIFYRLITLANKALNDLR 338
>gi|147669204|ref|YP_001214022.1| DNA polymerase III subunits gamma and tau [Dehalococcoides sp.
BAV1]
gi|146270152|gb|ABQ17144.1| DNA polymerase III, subunits gamma and tau [Dehalococcoides sp.
BAV1]
Length = 570
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 197/374 (52%), Gaps = 18/374 (4%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q +K+ P+T DLVGQ VA L NA+ ++ Y+F GP GTGKTS RI A+A+N
Sbjct: 7 QVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVN 66
Query: 469 CQSLE-QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
C + + + +PC C C+S G S +I E+ N + I +L + + S + Y++
Sbjct: 67 CTTNQGKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKV 126
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS + +A+ K ++ P RV+FIL ++ + + I+SRCQ+F F ++ D
Sbjct: 127 YIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLVD 186
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVG 646
+ L I+ EGI ++ +ALKLIA + GS RD E L+Q+ + G IS+ VQ +G
Sbjct: 187 MTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALG 246
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL------AGS 700
+ DE++ L + L D N +K L ++ G++ +L + I+ S
Sbjct: 247 ISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGSESS 306
Query: 701 YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLT--AALLQLA 758
+ T D ++ + ++ +E + +A+K S QL S+D + L+ AL+ +
Sbjct: 307 LELTAD-EKKALQKVSGITN--LENITKAIKAFS----QLDFSSDTASSLSFELALIDAS 359
Query: 759 PDQQYV-LPSSSAD 771
D+ V LP+ D
Sbjct: 360 LDKNTVPLPNKPKD 373
>gi|240047507|ref|YP_002960895.1| DNA polymerase III subunits gamma and tau [Mycoplasma conjunctivae
HRC/581]
gi|239985079|emb|CAT05072.1| DNA polymerase III gamma and tau subunit [Mycoplasma conjunctivae]
Length = 665
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/331 (32%), Positives = 185/331 (55%), Gaps = 24/331 (7%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ--- 470
KY P+TF D+VGQ L+ Q+L N + ++ Y+F G GTGKTS A+IFA LNCQ
Sbjct: 11 KYRPQTFNDVVGQELIVQSLKNIITSQQYFHAYLFAGSRGTGKTSLAKIFANTLNCQHKR 70
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
L P C +CI+ + S +I E+ N + I +L++N+ S Y++++
Sbjct: 71 DLLIP-----CETCIA-NINNSLDIIEIDAASNNGVKEIRELIENVANLPQNSPYKVYIM 124
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ +++A K ++ P+ V+FIL ++ + +P I+SR Q+F F K++ D+I
Sbjct: 125 DEAHMLTTSAFNAFLKTLEEPPKHVIFILATTEVHKIPLTILSRLQRFNFVKVQIQDVIK 184
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+++ KE I + AL+++A S+GSLRDA LEQ+S G ++++ V+ L GL S
Sbjct: 185 RLEFVLQKEAISYEIGALEMVAKLSEGSLRDALSILEQVSTFGNGKLNLSDVETLFGLTS 244
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVI-----------TDILA 698
+EK+V+ ++ + D ++ L+ I E G + ++ + +I TD+L+
Sbjct: 245 NEKIVEFINSLYAEDIKESLAILKQIFEQGKQTKLFLNSILNLIKNWLIYNIAHSTDLLS 304
Query: 699 GSYDFTKDRHR--RKF-FRRQPLSKEEMEKL 726
S D+ + + F ++ Q + E +EKL
Sbjct: 305 NSDIEILDKIKIDKAFAYKLQQIIFETIEKL 335
>gi|414563618|ref|YP_006042579.1| DNA polymerase III subunits gamma and tau [Streptococcus equi
subsp. zooepidemicus ATCC 35246]
gi|338846683|gb|AEJ24895.1| DNA polymerase III subunits gamma and tau [Streptococcus equi
subsp. zooepidemicus ATCC 35246]
Length = 558
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 160/292 (54%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFAEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVKGEPCNHCDICRDITTGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K A
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPSENVVFILATTELHKIPATILSRVQRFEFKAIKQAA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSL-LGQRISVPLVQELV 645
I L I KEGI + +AL LIA R++G +RDA L+Q LSL ++++ + +E+
Sbjct: 182 ICEHLAAILDKEGIAYETEALHLIARRAEGGMRDALSILDQALSLSFDNQVTLAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + + T + NL I ++G + L T D+L
Sbjct: 242 GSISISALDDYVQHLIRQKTSQALANLETIYDSGKSMSRFATDLLTYFRDLL 293
>gi|257084256|ref|ZP_05578617.1| DNA-directed DNA polymerase III [Enterococcus faecalis Fly1]
gi|256992286|gb|EEU79588.1| DNA-directed DNA polymerase III [Enterococcus faecalis Fly1]
Length = 586
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 191/356 (53%), Gaps = 6/356 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ + Q L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C +C++ G+ ++ E+ N E I D+ D + ++Y++
Sbjct: 63 NCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I + ++ ++ AL +I ++G +RDA L+Q +S +++++ ++ G
Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ E + + ++ D ++ L I+ G E + L D+L A
Sbjct: 243 SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPKLL 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
K + F ++ ++ EK+ Q ++ LS+ + ++R +N+ +L A ++LA
Sbjct: 303 AEKAGTLTEAF-KELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLA 357
>gi|395241987|ref|ZP_10418987.1| DNA polymerase III, subunit gamma and tau [Lactobacillus pasteurii
CRBIP 24.76]
gi|394480735|emb|CCI85227.1| DNA polymerase III, subunit gamma and tau [Lactobacillus pasteurii
CRBIP 24.76]
Length = 577
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 150/255 (58%), Gaps = 5/255 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF +VGQ + + L N++ R K+ ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDSIVGQEAITETLKNSIKRNKISHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +CI+ D+G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNECANCIAADKGALADIIEIDAASNNGVDEIREIRDKVKYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPAHVVFILATTELQKVPATIISRTQRYNFKRISKQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ + +I +E I + A+ +IA +DG +RDA L+Q LS ++ ++ G
Sbjct: 183 LMDRMVFILDQEKIAYEDQAISVIAQVADGGMRDALSILDQLLSYEQDSVTYQDALQITG 242
Query: 647 LISDEK----LVDLL 657
+ EK L+DLL
Sbjct: 243 FAAKEKIEQVLIDLL 257
>gi|288554626|ref|YP_003426561.1| DNA polymerase III subunits gamma and tau [Bacillus pseudofirmus
OF4]
gi|288545786|gb|ADC49669.1| DNA polymerase III gamma and tau subunits [Bacillus pseudofirmus
OF4]
Length = 561
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/362 (30%), Positives = 192/362 (53%), Gaps = 17/362 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ RD+VGQ + + L NA+++ K Y+F GP GTGKTS A+I A+A+
Sbjct: 3 YQALYRVWRPQQLRDVVGQEHITKTLQNALLQNKFSHAYLFSGPRGTGKTSAAKIIAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C G ++ E+ N + I D+ D + + Y++
Sbjct: 63 NCEKAPVAEPCNECAACKGITSGAIVDVMEIDAASNNGVDEIRDIRDKVKFAPNEVPYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPGHVIFILATTEPHKIPLTIISRCQRFDFKRIPNTA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISV---PLVQE- 643
I+ + I +GIE+D +AL +IA +DG +RDA LSLL Q IS PL E
Sbjct: 183 IVGRMNEILLHDGIEVDDEALNMIARAADGGMRDA------LSLLDQAISYAEGPLTLED 236
Query: 644 ---LVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD-ILAG 699
+ G +S++ LV+L++ + D+ +++L ++ G EP ++ L + D +L
Sbjct: 237 VLAITGAVSEQVLVNLVEAVANKDSAVVLESLDQLVRDGKEPGRILEDLIYYMRDLLLCK 296
Query: 700 SYDFTKDRHRRKFFRRQPLSKEE---MEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
+ +KD R +S E L QA++ L+ + ++++ S L AL++
Sbjct: 297 TAPDSKDLLERADSGDIAVSLSEQFDFPWLYQAIEVLNGSVQEMKWSTHPKVILEMALIR 356
Query: 757 LA 758
L
Sbjct: 357 LV 358
>gi|350564482|ref|ZP_08933300.1| DNA polymerase III, subunits gamma and tau [Thioalkalimicrobium
aerophilum AL3]
gi|349777960|gb|EGZ32322.1| DNA polymerase III, subunits gamma and tau [Thioalkalimicrobium
aerophilum AL3]
Length = 629
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 166/284 (58%), Gaps = 3/284 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+ F +LVGQ V QALSNA+ +++V Y+F G G GKT+ ARIFA+AL
Sbjct: 3 YQVLARKWRPKNFSELVGQTHVMQALSNALEQQRVHHAYLFTGTRGVGKTTIARIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ PCG C++C++ D+G+ ++ EV E ++LDN+ + ++++
Sbjct: 63 NCEQGPTAHPCGQCSACVAIDQGRFVDLIEVDAASRTKVEDTREILDNVQYAPTQGRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V F+L ++ LP ++SRC +F ++
Sbjct: 123 YLIDEVHMLSKSSFNALLKTLEEPPPHVKFLLATTEPHKLPITVLSRCLQFNLLRLTTVQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ L I E IE + AL LIA +DGS RDA L+Q ++ ++S VQ ++G
Sbjct: 183 LEQHLAMILGAEQIEFESGALALIAKAADGSARDALSLLDQAIAYCAGQLSQQAVQAMLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRV-IMETGVEPLALMSQL 689
L+S +++ ++L++ L +K L V + GV+ LAL++QL
Sbjct: 243 LVSPQQVQEVLNV-LQTGEAGALKTLLVNLAAMGVDYLALLNQL 285
>gi|390566192|ref|ZP_10246670.1| DNA polymerase III, subunits gamma and tau [Nitrolancetus
hollandicus Lb]
gi|390170559|emb|CCF86015.1| DNA polymerase III, subunits gamma and tau [Nitrolancetus
hollandicus Lb]
Length = 592
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/311 (34%), Positives = 175/311 (56%), Gaps = 13/311 (4%)
Query: 398 QNLGDNRNGRHQNLTQKYMPRTFR--DLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTG 455
Q G + + Q+L +KY PR+F +LVGQ VA+ L NA+ +V Y+F GP GTG
Sbjct: 4 QEPGGRMSAQSQSLYRKYRPRSFAQDELVGQEHVARTLQNAIELDRVAHAYLFCGPRGTG 63
Query: 456 KTSCARIFARALNCQSLE-QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLD 514
KTS AR+ A+A+NCQ +PC C +C + + G + +I E+ N + I DL +
Sbjct: 64 KTSTARLLAKAVNCQDPSPHNRPCNACAACRAINIGATVDIIEIDAASNRGVDDIRDLRE 123
Query: 515 NMVTSRPPSQYRI--FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIII 572
+ + P+Q R+ ++ D+ L+ D+++A K ++ P V F+L ++ D LP +
Sbjct: 124 KVKYA--PAQLRVKFYIIDEAHQLTRDAFNAFLKTLEEPPPHVRFVLATTEADKLPDTVA 181
Query: 573 SRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL 632
SRCQ+F F ++ A I L+ +A EG+++++DAL+LIA ++ GSLRDA L+QL+L
Sbjct: 182 SRCQRFDFRRIPVAQAIERLRTVAQLEGLDVEEDALRLIARQATGSLRDALGLLDQLALF 241
Query: 633 GQ------RISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALM 686
G+ ++ V+ ++GL ++LV L+D D ++ + ETG + L
Sbjct: 242 GESGDGKRTVTGDAVRAVLGLSRSDRLVGLVDALADRDPGAGLRLIAEAAETGEDVHQLN 301
Query: 687 SQLATVITDIL 697
QL + +L
Sbjct: 302 RQLVGYLRTLL 312
>gi|452204864|ref|YP_007484993.1| DNA polymerase III subunit gamma and tau [Dehalococcoides mccartyi
BTF08]
gi|452111920|gb|AGG07651.1| DNA polymerase III subunit gamma and tau [Dehalococcoides mccartyi
BTF08]
Length = 570
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 156/275 (56%), Gaps = 2/275 (0%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q +K+ P+T DLVGQ VA L NA+ ++ Y+F GP GTGKTS RI A+A+N
Sbjct: 7 QVFYRKWRPQTLADLVGQEHVAHTLKNALSSERIAQAYLFCGPRGTGKTSTGRILAKAVN 66
Query: 469 CQSLE-QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
C + + + +PC C C+S G S +I E+ N + I +L + + S + Y++
Sbjct: 67 CTTNQGKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKV 126
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS + +A+ K ++ P RV+FIL ++ + + I+SRCQ+F F ++ D
Sbjct: 127 YIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLVD 186
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVG 646
+ L I+ EGI ++ +ALKLIA + GS RD E L+Q+ + G IS+ VQ +G
Sbjct: 187 MTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALG 246
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVE 681
+ DE++ L + L D N +K L ++ G++
Sbjct: 247 ISGDERIKALAENILKKDIKNGLKTLNAVLADGLD 281
>gi|227519437|ref|ZP_03949486.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
TX0104]
gi|424677174|ref|ZP_18114033.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV103]
gi|424679246|ref|ZP_18116074.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV116]
gi|424682440|ref|ZP_18119210.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV129]
gi|424685998|ref|ZP_18122671.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV25]
gi|424689003|ref|ZP_18125597.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV31]
gi|424692616|ref|ZP_18129099.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV37]
gi|424695893|ref|ZP_18132265.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV41]
gi|424699084|ref|ZP_18135324.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV62]
gi|424702655|ref|ZP_18138802.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV63]
gi|424705797|ref|ZP_18141819.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV65]
gi|424716056|ref|ZP_18145373.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV68]
gi|424719282|ref|ZP_18148458.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV72]
gi|424724470|ref|ZP_18153416.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV73]
gi|424726190|ref|ZP_18154864.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV81]
gi|424734599|ref|ZP_18163094.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV85]
gi|424746736|ref|ZP_18174957.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV93]
gi|227073049|gb|EEI11012.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
TX0104]
gi|402355204|gb|EJU89981.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV103]
gi|402357624|gb|EJU92329.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV116]
gi|402367473|gb|EJV01813.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV129]
gi|402368072|gb|EJV02397.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV25]
gi|402369431|gb|EJV03709.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV31]
gi|402377627|gb|EJV11524.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV37]
gi|402377813|gb|EJV11705.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV62]
gi|402379127|gb|EJV12947.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV41]
gi|402386684|gb|EJV20182.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV63]
gi|402388819|gb|EJV22244.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV68]
gi|402389227|gb|EJV22627.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV65]
gi|402395017|gb|EJV28151.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV73]
gi|402396857|gb|EJV29902.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV72]
gi|402400214|gb|EJV33053.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV81]
gi|402406944|gb|EJV39484.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV85]
gi|402409148|gb|EJV41583.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV93]
Length = 586
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 191/356 (53%), Gaps = 6/356 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ + Q L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C +C++ G+ ++ E+ N E I D+ D + ++Y++
Sbjct: 63 NCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I + ++ ++ AL +I ++G +RDA L+Q +S +++++ ++ G
Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ E + + ++ D ++ L I+ G E + L D+L A
Sbjct: 243 SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPKLL 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
K + F ++ ++ EK+ Q ++ LS+ + ++R +N+ +L A ++LA
Sbjct: 303 AEKAGTLTEAF-KELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLA 357
>gi|417941117|ref|ZP_12584404.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK313]
gi|343388410|gb|EGV00996.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK313]
Length = 551
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 178/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVDGEPCNHCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIYHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + +L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVSKALDSLNLLFENGKSMTRFVTDLLQYLRDLLVVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F LS+E + E +R A +L++ + L+
Sbjct: 302 THHSPVFMDNLALSQESLFEMIRIATVSLADMKASLQ 338
>gi|417794637|ref|ZP_12441882.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK255]
gi|334268251|gb|EGL86694.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK255]
Length = 551
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 178/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVDGEPCNHCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIYHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + +L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALAQQDVPKALDSLNLLFENGKSMTRFVTDLLQYLRDLLVVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F LS+E + E +R A +L++ + L+
Sbjct: 302 THHSPVFMDNLALSQESLFEMIRIATVSLADMKASLQ 338
>gi|225868888|ref|YP_002744836.1| DNA polymerase III subunit gamma/tau [Streptococcus equi subsp.
zooepidemicus]
gi|225702164|emb|CAW99865.1| DNA polymerase III subunit gamma/tau [Streptococcus equi subsp.
zooepidemicus]
Length = 558
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 160/292 (54%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFAEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVKGEPCNHCDICRDITTGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K A
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPSDNVVFILATTELHKIPATILSRVQRFEFKAIKQAA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSL-LGQRISVPLVQELV 645
I L I KEGI + +AL LIA R++G +RDA L+Q LSL ++++ + +E+
Sbjct: 182 ICEHLAAILDKEGIAYETEALHLIARRAEGGMRDALSILDQALSLSFDNQVTLAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + + T + NL I ++G + L T D+L
Sbjct: 242 GSISISALDDYVQHLIGQKTSQALANLETIYDSGKSMSRFATDLLTYFRDLL 293
>gi|257081660|ref|ZP_05576021.1| DNA-directed DNA polymerase III [Enterococcus faecalis E1Sol]
gi|256989690|gb|EEU76992.1| DNA-directed DNA polymerase III [Enterococcus faecalis E1Sol]
Length = 586
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 191/356 (53%), Gaps = 6/356 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ + Q L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C +C++ G+ ++ E+ N E I D+ D + ++Y++
Sbjct: 63 NCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I + ++ ++ AL +I ++G +RDA L+Q +S +++++ ++ G
Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ E + + ++ D ++ L I+ G E + L D+L A
Sbjct: 243 SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPKLL 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
K + F ++ ++ EK+ Q ++ LS+ + ++R +N+ +L A ++LA
Sbjct: 303 AEKAGTLTEAF-KELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLA 357
>gi|256960974|ref|ZP_05565145.1| DNA-directed DNA polymerase III [Enterococcus faecalis Merz96]
gi|293384387|ref|ZP_06630270.1| DNA polymerase III, gamma and tau subunit [Enterococcus faecalis
R712]
gi|293388163|ref|ZP_06632686.1| DNA polymerase III, gamma and tau subunit [Enterococcus faecalis
S613]
gi|312908210|ref|ZP_07767180.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
DAPTO 512]
gi|312978640|ref|ZP_07790371.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
DAPTO 516]
gi|256951470|gb|EEU68102.1| DNA-directed DNA polymerase III [Enterococcus faecalis Merz96]
gi|291078286|gb|EFE15650.1| DNA polymerase III, gamma and tau subunit [Enterococcus faecalis
R712]
gi|291082453|gb|EFE19416.1| DNA polymerase III, gamma and tau subunit [Enterococcus faecalis
S613]
gi|310625799|gb|EFQ09082.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
DAPTO 512]
gi|311288542|gb|EFQ67098.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
DAPTO 516]
Length = 586
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 191/356 (53%), Gaps = 6/356 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ + Q L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C +C++ G+ ++ E+ N E I D+ D + ++Y++
Sbjct: 63 NCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I + ++ ++ AL +I ++G +RDA L+Q +S +++++ ++ G
Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ E + + ++ D ++ L I+ G E + L D+L A
Sbjct: 243 SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPKLL 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
K + F ++ ++ EK+ Q ++ LS+ + ++R +N+ +L A ++LA
Sbjct: 303 AEKAGTLTEAF-KELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLA 357
>gi|118578743|ref|YP_899993.1| DNA polymerase III subunits gamma/tau [Pelobacter propionicus DSM
2379]
gi|118501453|gb|ABK97935.1| DNA polymerase III, tau subunit [Pelobacter propionicus DSM 2379]
Length = 569
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 111/341 (32%), Positives = 174/341 (51%), Gaps = 9/341 (2%)
Query: 405 NGRH-QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIF 463
NG H + L +KY P+T +L GQ V++ L NA+ +V ++F G G GKTS ARI
Sbjct: 3 NGTHYEVLARKYRPQTLSELTGQEHVSRTLQNAIDSGRVAHAFLFSGARGVGKTSTARIL 62
Query: 464 ARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS 523
A+ALNC+ +PC C CI +G S ++ E+ N + I +L DN S
Sbjct: 63 AKALNCERGVSTEPCNTCPLCIEITKGTSTDVFEIDGASNTGVDDIRELRDNAKYLPSHS 122
Query: 524 QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKM 583
+Y+IF+ D+ LS ++++A+ K ++ P V FI ++ LP I+SRCQ+F F ++
Sbjct: 123 RYKIFIIDEVHMLSTNAFNALLKTLEEPPEHVKFIFATTEPHKLPITILSRCQRFDFKRI 182
Query: 584 KDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQ 642
A II L+ IA EGI I+ AL LIA + DGS+RD+ +Q L+ G +S
Sbjct: 183 PLAKIIGRLRQIADAEGISINDSALALIARKGDGSMRDSLTAFDQVLACCGSNVSDEDTA 242
Query: 643 ELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD 702
L+G + L ++ +ADT + +R + E G +L + +++ S
Sbjct: 243 TLIGAVDRRLLANISAAIFAADTQAVLAGIRQVDEVGYNLRQFCQELIEQLRNLMVVS-- 300
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMS 743
RK LS E++ LR+ S + Q R++
Sbjct: 301 -----SVRKPEEILDLSAPELDDLRRQANGFSSQDIQRRLT 336
>gi|422697958|ref|ZP_16755885.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX1346]
gi|315173519|gb|EFU17536.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX1346]
Length = 586
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 191/356 (53%), Gaps = 6/356 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ + Q L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C +C++ G+ ++ E+ N E I D+ D + ++Y++
Sbjct: 63 NCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I + ++ ++ AL +I ++G +RDA L+Q +S +++++ ++ G
Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ E + + ++ D ++ L I+ G E + L D+L A
Sbjct: 243 SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPKLL 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
K + F ++ ++ EK+ Q ++ LS+ + ++R +N+ +L A ++LA
Sbjct: 303 AEKAGTLTEAF-KELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLA 357
>gi|414155824|ref|ZP_11412134.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. F0442]
gi|410872759|gb|EKS20700.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. F0442]
Length = 558
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 162/292 (55%), Gaps = 9/292 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVARTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C S G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQVNGEPCNDCYICESITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKLPD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I+ L+ I + EGI + DA+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IVQHLENILATEGIAYEADAVQIIARRAEGGMRDALSILDQALSLTAGSELTTAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + L+ D + L +I + G +A +TD+L
Sbjct: 242 GSISLAALDQYVAAILAHDATAALDQLAIIFDNG-------KNMARFVTDLL 286
>gi|306825065|ref|ZP_07458407.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|304432501|gb|EFM35475.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sp. oral
taxon 071 str. 73H25AP]
Length = 551
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 178/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVDGEPCNHCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIYHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + +L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALDSLNLLFENGKSMTRFVTDLLQYLRDLLVVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F LS+E + E +R A +L++ + L+
Sbjct: 302 THHSPVFMDNLALSQESLFEMIRMATVSLADMKASLQ 338
>gi|257416948|ref|ZP_05593942.1| DNA-directed DNA polymerase III [Enterococcus faecalis ARO1/DG]
gi|257158776|gb|EEU88736.1| DNA-directed DNA polymerase III [Enterococcus faecalis ARO1/DG]
Length = 586
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 191/356 (53%), Gaps = 6/356 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ + Q L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C +C++ G+ ++ E+ N E I D+ D + ++Y++
Sbjct: 63 NCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I + ++ ++ AL +I ++G +RDA L+Q +S +++++ ++ G
Sbjct: 183 IVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ E + + ++ D ++ L I+ G E + L D+L A
Sbjct: 243 SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPKLL 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
K + F ++ ++ EK+ Q ++ LS+ + ++R +N+ +L A ++LA
Sbjct: 303 AEKAGTLTEAF-KELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLA 357
>gi|429738100|ref|ZP_19271919.1| DNA polymerase III, subunit gamma and tau [Prevotella
saccharolytica F0055]
gi|429160976|gb|EKY03417.1| DNA polymerase III, subunit gamma and tau [Prevotella
saccharolytica F0055]
Length = 566
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 191/356 (53%), Gaps = 14/356 (3%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS- 471
+KY P +F +VGQ+ + L NAV K+ Y+F GP G GKT+CARIFA+A+NCQ+
Sbjct: 9 RKYRPLSFDSVVGQSSLTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCQTP 68
Query: 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFV 529
+ + C C SC + + +S NI E+ N E+I L++ T PP +Y++F+
Sbjct: 69 TTEGEACNHCESCEAFNEQRSYNIFELDAASNNSVENIKSLMEQ--TRIPPQVGKYKVFI 126
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ LS +++A K ++ P V+FIL ++ + IISRCQ + F +M II
Sbjct: 127 IDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTIISRCQIYDFERMTVPGII 186
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLI 648
L+ +A+KE I +++AL +I+ ++DG +RDA +Q+ Q I+ V E + ++
Sbjct: 187 EHLKSVAAKENITYEEEALTIISEKADGGMRDALSIFDQVVSFCQGNITYQGVIEDLNVL 246
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT---- 704
+ +++DLA + + L I+ G + L++ LA+ + ++L + T
Sbjct: 247 DSDNYFNIIDLAYENKVADIMALLNSIITKGFDGGNLINGLASHVRNVLMAKDEVTLTLL 306
Query: 705 --KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R R ++ R+ K + L +AL+ ++ + R S++K + L+++A
Sbjct: 307 EVSQRQRERY--REQAQKCTTKFLYRALEIMNRCDINYRQSSNKRLLVELTLIEVA 360
>gi|296131618|ref|YP_003638865.1| DNA polymerase III subunits gamma and tau [Thermincola potens JR]
gi|296030196|gb|ADG80964.1| DNA polymerase III, subunits gamma and tau [Thermincola potens JR]
Length = 537
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 158/277 (57%), Gaps = 11/277 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L +++ P+ F+D+VGQ + + L NA+ ++ Y+F GP GTGKT+ A++FA+AL
Sbjct: 3 YMALYREWRPQIFQDIVGQQHITRTLQNAIKANRIAHAYLFCGPRGTGKTTTAKVFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC CN+CI G S ++ E+ N + I DL + + S +YRI
Sbjct: 63 NCKEGPNAEPCNQCNNCIRITDGVSMDVLEIDAASNRGIDEIRDLREKVKFSPTEGRYRI 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+FIL ++ +P I+SRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPHHVIFILATTEPHKIPTTILSRCQRFDFRRIGTGE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L+ + ++ D++ L L+A ++G LRDA L+Q ++ GQR++V V ++G
Sbjct: 183 IVDRLRDVCESLQVQTDEETLTLLAKTAEGGLRDALSVLDQCIAFGGQRVTVEEVNTVLG 242
Query: 647 LISDEKLVDLLD----------LALSADTVNTVKNLR 673
+ E L ++D L L D VN K+LR
Sbjct: 243 TVDQELLFKMVDYFINKDSTSALFLVDDIVNQGKDLR 279
>gi|357239853|ref|ZP_09127187.1| DNA polymerase III, subunit gamma and tau [Streptococcus ictaluri
707-05]
gi|356751609|gb|EHI68761.1| DNA polymerase III, subunit gamma and tau [Streptococcus ictaluri
707-05]
Length = 560
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 160/292 (54%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ+L++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQSLISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQVNGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K AD
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQAD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQ-RISVPLVQELV 645
I L I KE I DAL LIA R++G +RDA L+Q LSL + ++S+ + +E+
Sbjct: 182 IRQHLATILDKEVISYQLDALNLIARRAEGGMRDAFSILDQALSLSSENQVSLSVAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + L DT + +L I ++G + L T + D+L
Sbjct: 242 GSISMAALDDYVQHLLQEDTSGALNDLETIYDSGKSMSRFATDLLTYLRDLL 293
>gi|407796829|ref|ZP_11143780.1| DNA polymerase III subunit gamma/tau [Salimicrobium sp. MJ3]
gi|407018727|gb|EKE31448.1| DNA polymerase III subunit gamma/tau [Salimicrobium sp. MJ3]
Length = 563
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 106/373 (28%), Positives = 198/373 (53%), Gaps = 22/373 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P FRD+VGQ + + L NA+ ++K Y+F GP GTGKTS A+IFA+ +
Sbjct: 3 YQALYRVWRPTLFRDVVGQTHITRTLQNAIAQQKFSHAYLFSGPRGTGKTSAAKIFAKTV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C++C+ G ++ E+ N E I D+ D + + Y++
Sbjct: 63 NCEQGPTKEPCNACSACLGIQDGSISDVIEIDAASNNGVEQIRDIRDKVKYAPTSVSYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ +P IISRCQ+F F ++
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPSHVVFILATTEPHKIPLTIISRCQRFDFKRISQTA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPL------- 640
++ + I +E + +D++AL+++A ++G +RDA LSLL Q IS
Sbjct: 183 MVERMASITEEEDLAVDREALEIVALSAEGGMRDA------LSLLDQAISYSEDAVGTED 236
Query: 641 VQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS 700
V + G IS ++L LL + + ++ + +++ G +P + L + D+L
Sbjct: 237 VLAVTGSISQQQLAALLRYVHAGEVKEALETVDALIQEGKDPGRFVFDLIYYLRDLLMYK 296
Query: 701 YDFTKDRHRRKF-----FRRQPLSKE-EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAAL 754
++H + FR LS E + E ++ A+++L++ +++++ + ++ AL
Sbjct: 297 SAPGLEQHLERAVPDEGFRA--LSGELQPEWIQGAIRSLNQCQQEMKWTTSPKVFIEIAL 354
Query: 755 LQLAPDQQYVLPS 767
L +A DQ+ P+
Sbjct: 355 LNIA-DQKSGAPA 366
>gi|417935100|ref|ZP_12578420.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis bv.
2 str. F0392]
gi|340771670|gb|EGR94185.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis bv.
2 str. F0392]
Length = 552
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 106/337 (31%), Positives = 179/337 (53%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQCFEFKSIRAQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I +Q I SKE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIQAILSKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNSLTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + +L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALAQQDVPKALDSLNLLFENGKSMTRFVTDLLQYLRDLLVVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F LS+E + E +R A +L++ + L+
Sbjct: 302 THHSPVFMDNLALSQESLFEMIRLATVSLADMKASLQ 338
>gi|288802676|ref|ZP_06408114.1| DNA polymerase III, gamma and tau subunit protein [Prevotella
melaninogenica D18]
gi|288334826|gb|EFC73263.1| DNA polymerase III, gamma and tau subunit protein [Prevotella
melaninogenica D18]
Length = 603
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/360 (31%), Positives = 188/360 (52%), Gaps = 22/360 (6%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P +F +VGQ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC
Sbjct: 9 RKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC--- 65
Query: 473 EQP----KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYR 526
E P + C C SC + G+S NI E+ N E+I L+D T PP +Y+
Sbjct: 66 EHPTADGEACNECESCKAFGEGRSYNIFELDAASNNSVENIKSLMDQ--TRIPPQVGRYK 123
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+F+ D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M
Sbjct: 124 VFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVP 183
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELV 645
+II L+ +A KE I+ D++AL +IA ++DG +RDA +Q + Q I+ V E +
Sbjct: 184 NIINHLKRVAEKENIQFDEEALNVIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDL 243
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS----- 700
++ E +++DLAL + L ++ G + L++ LA+ + ++L
Sbjct: 244 NVLDAENYFNIIDLALENKVSEIMVLLNSVINKGFDGGHLVNGLASHVRNVLMAKDVQTL 303
Query: 701 --YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ ++ R + Q K + L AL+ ++ + + R S++K + L+Q+A
Sbjct: 304 PLLEVSEQLRNRYQLQAQ---KCPVNFLYTALQIMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|160933397|ref|ZP_02080785.1| hypothetical protein CLOLEP_02242 [Clostridium leptum DSM 753]
gi|156867274|gb|EDO60646.1| DNA polymerase III, subunit gamma and tau [Clostridium leptum DSM
753]
Length = 564
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 145/254 (57%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+ F D+VGQ V L N + ++ Y+F G GTGKT+CA+I A+A+
Sbjct: 5 YQVLYRKWRPQVFSDVVGQPQVTVTLQNELKAGRIAHAYLFTGSRGTGKTTCAKILAKAV 64
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC SL++ PCG C SC+ D G ++ E+ N E+I +L + + ++YR+
Sbjct: 65 NCLSLKEGDPCGECESCVGIDNGSVMDVVEIDAASNNGVENIRNLREEASFTPAAAKYRV 124
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ + LP I+SRCQ+F F ++
Sbjct: 125 YIIDEVHMLSIGAFNALLKTLEEPPAHVVFILATTEVHKLPATILSRCQRFDFHRIDPEV 184
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGL 647
I LQ++A +E ++++A LIA +DG +RDA L+Q I++ +V E GL
Sbjct: 185 IADRLQFVAGEENAHLEREAALLIARIADGGMRDALSLLDQCMGRSSEITLEVVSETAGL 244
Query: 648 ISDEKLVDLLDLAL 661
+ L L D L
Sbjct: 245 AGRDHLFSLADTVL 258
>gi|419782276|ref|ZP_14308085.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK610]
gi|383183380|gb|EIC75917.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK610]
Length = 552
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 177/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVDGEPCNHCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 ITAHIHHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + +L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVSKALDSLNLLFENGKSMTRFVTDLLQYLRDLLVVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F LS+E + E +R A +L + + L+
Sbjct: 302 THHSPVFMDNLALSQESLFEMIRIATVSLPDMKASLQ 338
>gi|222100874|ref|YP_002535442.1| DNA polymerase III, gamma and tau subunit [Thermotoga neapolitana
DSM 4359]
gi|221573264|gb|ACM24076.1| DNA polymerase III, gamma and tau subunit [Thermotoga neapolitana
DSM 4359]
Length = 473
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 163/286 (56%), Gaps = 13/286 (4%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+TF ++V Q+ V +A+ A+ + V Y+F GP GTGKT+ ARI A++LNC+
Sbjct: 4 LYRKYRPKTFSEVVNQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNCE 63
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP-PSQYRIFV 529
+ E +PC C SC D G ++ E+ N + I + D V RP +Y++++
Sbjct: 64 NREGVEPCNRCRSCREIDEGTFMDVIELDAASNRGIDEIRRIRD-AVGYRPMEGKYKVYI 122
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ L+ ++++A+ K ++ P VVF+L +++L+ +P IISRCQ F F + D I
Sbjct: 123 IDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVFEFRNIPDELIE 182
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLI 648
LQ +A EGI+ID +AL+ IA R+ G +RDA LEQ+ + +I + V +GLI
Sbjct: 183 KRLQEVARAEGIDIDDEALRFIARRAAGGMRDALTMLEQVWKFSEGKIDLETVHRALGLI 242
Query: 649 SDEKLVDLLDLALSADT--VNTV--------KNLRVIMETGVEPLA 684
+ + D ++ LS + V TV K+ V+++ VE L
Sbjct: 243 PIQVVRDYVNAILSGNVRKVFTVLDDVYYSGKDYEVLIQEAVEDLV 288
>gi|400290658|ref|ZP_10792685.1| DNA polymerase III subunits gamma and tau [Streptococcus ratti FA-1
= DSM 20564]
gi|399921449|gb|EJN94266.1| DNA polymerase III subunits gamma and tau [Streptococcus ratti FA-1
= DSM 20564]
Length = 555
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 162/296 (54%), Gaps = 10/296 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVATTLKQAVASGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPNQKDGEPCNHCDICQDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSAGAFNALLKTLEEPTGNVVFILATTELHKIPATILSRVQRFEFKTIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLG-QRISVPLVQELV 645
I L I KE + D++AL LIA R++G +RDA L+Q LSL Q +S+ + +E+
Sbjct: 182 IQEHLAEILQKEEVSFDEEALSLIAKRAEGGMRDALSILDQALSLTADQHVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS D + DLL+ DT + +L +I ++G + L + DIL
Sbjct: 242 GSISLSALDHYVADLLN----HDTSQALNDLEIIFDSGKSMSRFATDLLNYLRDIL 293
>gi|430742263|ref|YP_007201392.1| DNA polymerase III subunits gamma and tau [Singulisphaera
acidiphila DSM 18658]
gi|430013983|gb|AGA25697.1| DNA polymerase III, subunit gamma/tau [Singulisphaera acidiphila
DSM 18658]
Length = 589
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 192/356 (53%), Gaps = 5/356 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ + ++Y P+ F D+VGQ+ V ++L NA+ +V Y+F G G GKTS ARIFA+ L
Sbjct: 10 YTVVARRYRPQRFEDVVGQDNVVESLRNAIKLNRVTHAYLFSGTRGVGKTSIARIFAKCL 69
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C + G+ ++ E+ N ES+ +L N ++++I
Sbjct: 70 NCVKGPTDQPCLQCDICQAIATGEDVDVLEIDGASNNGVESVRELRQNTGLRPSRARFKI 129
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
+ D+ LS +++A+ K ++ P V F ++ +P ++SRCQ++ F +
Sbjct: 130 YYIDEVHMLSTGAFNALLKTLEEPPPHVKFFFATTEPGKIPVTVLSRCQRYDFAGITPEQ 189
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ TL I +E I+ + +AL+ IA R+ GS+RDA+ +EQ LS G+R++V V L+G
Sbjct: 190 IVATLSDICIREQIQAEPEALQTIARRAGGSMRDAQSLVEQLLSSAGERLTVEAVHRLLG 249
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL---AGSYDF 703
SDE+++D+LD D+ ++ + G++P L++ + + D++ AG+
Sbjct: 250 TASDERILDVLDALADHDSGAVLRLVDAAANQGIQPTDLLNGVIDFLRDVMVLSAGADQT 309
Query: 704 TKDRHRRKFFRRQP-LSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R+ R Q + + ++ + AL+ L EA +LR S T + L+++A
Sbjct: 310 VLTATPRQRPRLQAVVDRWPLDSILAALQILPEARSKLRGSPHGRTIIEVGLVKVA 365
>gi|302345714|ref|YP_003814067.1| DNA polymerase III, subunit gamma and tau [Prevotella
melaninogenica ATCC 25845]
gi|302150079|gb|ADK96341.1| DNA polymerase III, subunit gamma and tau [Prevotella
melaninogenica ATCC 25845]
Length = 603
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 112/360 (31%), Positives = 188/360 (52%), Gaps = 22/360 (6%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P +F +VGQ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC
Sbjct: 9 RKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC--- 65
Query: 473 EQP----KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYR 526
E P + C C SC + G+S NI E+ N E+I L+D T PP +Y+
Sbjct: 66 EHPTADGEACNECESCKAFGEGRSYNIFELDAASNNSVENIKSLMDQ--TRIPPQVGRYK 123
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+F+ D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M
Sbjct: 124 VFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVP 183
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELV 645
+II L+ +A KE I+ D++AL +IA ++DG +RDA +Q + Q I+ V E +
Sbjct: 184 NIINHLKRVAEKENIQFDEEALNVIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDL 243
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS----- 700
++ E +++DLAL + L ++ G + L++ LA+ + ++L
Sbjct: 244 NVLDAENYFNIIDLALENKVSEIMVLLNSVINKGFDGGHLVNGLASHVRNVLMAKDAQTL 303
Query: 701 --YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ ++ R + Q K + L AL+ ++ + + R S++K + L+Q+A
Sbjct: 304 PLLEVSEQLRNRYQLQAQ---KCPVNFLYTALQIMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|227894598|ref|ZP_04012403.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
ultunensis DSM 16047]
gi|227863589|gb|EEJ71010.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
ultunensis DSM 16047]
Length = 601
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 162/288 (56%), Gaps = 1/288 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF ++GQ + L NA+ R KV ++F GP GTGKTSCA+IFA+AL
Sbjct: 3 YQALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +CI+ D G +I E+ N + I ++ D + + +Y++
Sbjct: 63 NCTNLQDGEPCNKCTNCIAADHGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKDD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ +++I +E I+ + A+ +IA +DG +RDA L+Q LS + ++ ++ G
Sbjct: 183 LEKRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSILDQLLSYEKESVNYKDALQITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVIT 694
+ E + +L L+ D +K + ++ G ++ +L + T
Sbjct: 243 FAARENIEHILLSLLNQDAGTALKLAQAELDKGASSKNILDELIDMAT 290
>gi|225870106|ref|YP_002746053.1| DNA polymerase III subunits gamma and tau [Streptococcus equi
subsp. equi 4047]
gi|225699510|emb|CAW93067.1| DNA polymerase III subunit gamma/tau [Streptococcus equi subsp.
equi 4047]
Length = 558
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 159/292 (54%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFAEMVGQSVISTTLKQAVESEKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVKGEPCNHCDICRDITTGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPSDNVVFILATTELHKIPATILSRVQRFEFKAIKQPA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSL-LGQRISVPLVQELV 645
I L I KEGI + +AL LIA R++G +RDA L+Q LSL R+++ + +E+
Sbjct: 182 ICEHLAAILDKEGIAYEIEALHLIARRAEGGMRDALSILDQALSLSFDNRVTLAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + + T + NL I ++G + L T D+L
Sbjct: 242 GSISISALDDYVQHLIRQKTSQALANLETIYDSGKSMSRFATDLLTYFRDLL 293
>gi|194334277|ref|YP_002016137.1| DNA polymerase III subunits gamma and tau [Prosthecochloris
aestuarii DSM 271]
gi|194312095|gb|ACF46490.1| DNA polymerase III, subunits gamma and tau [Prosthecochloris
aestuarii DSM 271]
Length = 617
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 153/296 (51%), Gaps = 14/296 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q + +KY P F D+ Q + + NA+ +VG Y+F G G GKT+ AR+FA+A+
Sbjct: 3 YQVIARKYRPSKFADITAQEHITHTIQNALRLDRVGHGYIFSGLRGVGKTTAARVFAKAV 62
Query: 468 NCQSL--------EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTS 519
NCQ + E +PCG C SC+ D G S NI E N + I L +N+
Sbjct: 63 NCQKMIDDPVYRQEVTEPCGECESCLDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYG 122
Query: 520 RPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFF 579
+YR+++ D+ LS +++A K ++ P +FI ++ L +P I SRCQ+F
Sbjct: 123 PQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPSHAIFIFATTELHKIPATISSRCQRFN 182
Query: 580 FPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG------ 633
F ++ +I LQ I E ++I DAL LIA ++ GS+RDA+ L+Q+
Sbjct: 183 FKRIPIGEIQSQLQMICRAETLQISDDALLLIARKAQGSMRDAQSILDQVIAFSVGNDAE 242
Query: 634 QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689
+ I+ V EL+ I D++ D+ D D V ++ R +++ G + + +L
Sbjct: 243 KVIAYQGVAELLNYIDDDQFFDVSDAVAENDPVKMLQVARFVIDNGYDEQDFLEKL 298
>gi|322389826|ref|ZP_08063368.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus
parasanguinis ATCC 903]
gi|321143486|gb|EFX38922.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus
parasanguinis ATCC 903]
Length = 558
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 161/292 (55%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQQVVARTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C S G ++ E+ N + I D+ D + +++++
Sbjct: 62 NCPNQVNGEPCNNCYICESITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKLPD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I+ L+ I + EGI + DA+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IVQHLENILATEGIAYEADAVQIIARRAEGGMRDALSILDQALSLTAGSELTAAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + L D + L +I + G ++ L + D+L
Sbjct: 242 GSISLAALDQYVAAILDHDATAALDQLAIIFDNGKNMARFVADLLQYLRDLL 293
>gi|406577166|ref|ZP_11052783.1| DNA polymerase III subunits gamma and tau [Streptococcus sp. GMD6S]
gi|404460254|gb|EKA06527.1| DNA polymerase III subunits gamma and tau [Streptococcus sp. GMD6S]
Length = 552
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 178/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 ITAHIHHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNALTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + +L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALAQQDVPKALDSLNLLFENGKSMTRFVTDLLQYLRDLLVVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F LS+E + E +R A +L++ + L+
Sbjct: 302 THHSPVFMDNLALSQESLFEMIRIATVSLADMKASLQ 338
>gi|209554162|ref|YP_002284512.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 10 str. ATCC 33699]
gi|225550499|ref|ZP_03771448.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 2 str. ATCC 27814]
gi|209541663|gb|ACI59892.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 10 str. ATCC 33699]
gi|225379653|gb|EEH02015.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 2 str. ATCC 27814]
Length = 603
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 173/316 (54%), Gaps = 7/316 (2%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P F+D++GQNL+ QAL NA + K Y+F GP G GKTS ARIFA ++NC
Sbjct: 6 LYRKYRPHKFKDVIGQNLIKQALINANLNNKTTHAYIFSGPRGIGKTSIARIFAASINCL 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
C C+ C S +S ++ E+ N + + ++ DN+ +Y++++
Sbjct: 66 KPNNGDCCEECSVCQSIINEQSVDLIELDAASNNGVDQMRNITDNINYLPTLFKYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +W+A+ K V+ P+ V+FI ++ +P IISRCQ++ F ++ ++++
Sbjct: 126 DEAHMLSTSAWNALLKTVEEPPQHVIFIFATTEYQKIPLTIISRCQRYDFNRLNNSELQE 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
+ +A KE I+I+++A+ + +DG+ RD L+QL + I + L+ + GL+ +
Sbjct: 186 LIDLVAKKEDIKINENAINKLIQLADGAGRDCLSILDQLVTNQKVIDIDLINKTFGLVDN 245
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRR 710
K+++L++L D + K + + + G+ A +Q+ ++ D L Y T D
Sbjct: 246 SKVINLIELIQKNDLLELRKFIYELYDYGINLEAFCAQIINILIDYLV--YQKTNDETNL 303
Query: 711 KFFRRQPLSKEEMEKL 726
K +S +E++K+
Sbjct: 304 K-----KISIDELKKI 314
>gi|401683494|ref|ZP_10815380.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. BS35b]
gi|418975716|ref|ZP_13523614.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK1074]
gi|383347162|gb|EID25163.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK1074]
gi|400187572|gb|EJO21766.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. BS35b]
Length = 551
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 178/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVDGEPCNHCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIYHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + +L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVSKALDSLNLLFENGKSMTRFVTDLLQYLRDLLVVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F LS+E + E +R A +L++ + L+
Sbjct: 302 THHSPVFMDNLALSQESLFEMIRIATVSLADMKASLQ 338
>gi|365924292|ref|ZP_09447055.1| DNA polymerase III subunits gamma and tau [Lactobacillus mali KCTC
3596 = DSM 20444]
Length = 570
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 157/274 (57%), Gaps = 3/274 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F DLVGQ ++ Q L NA+M ++ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRPQKFVDLVGQKMITQTLQNAIMTQQTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C +C + G+ ++ E+ N + I D+ D + + + Y++
Sbjct: 63 NCHNQKDGEPCNECATCRAITEGRLNDVIEIDAASNNSVDEIRDIRDKVKYAPTQADYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ +P IISR Q+F F ++ + D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPSNVVFILATTEPHKIPATIISRTQRFDFKRITNDD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV-- 645
II +Q+I +++ + ++ AL+++A S G +RDA L+Q+ G + V L L+
Sbjct: 183 IIARMQYILAEKNFKYEEKALRVVAKASAGGMRDALSILDQVLSFGNDV-VTLENALLVT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETG 679
G + E+L L L +T ++ L+ IM G
Sbjct: 242 GSVKHEQLNLYLKLVFEGETAQALQALQEIMSEG 275
>gi|421488789|ref|ZP_15936177.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK304]
gi|400368006|gb|EJP21021.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK304]
Length = 551
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 178/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L A+ + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAIEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVDGEPCNHCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIYHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + +L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALDSLNLLFENGKSMTRFVTDLLQYLRDLLVVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F LS+E + E +R A +L++ + L+
Sbjct: 302 THHSPVFMDNLALSQESLFEMIRMATVSLADMKASLQ 338
>gi|13357643|ref|NP_077917.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum
serovar 3 str. ATCC 700970]
gi|170762399|ref|YP_001752167.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum
serovar 3 str. ATCC 27815]
gi|183508454|ref|ZP_02957993.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum
serovar 14 str. ATCC 33697]
gi|11356842|pir||F82935 DNA polymerase III gamma-tau subunits UU087 [imported] - Ureaplasma
urealyticum
gi|6899039|gb|AAF30492.1|AE002108_5 DNA polymerase III gamma-tau subunit [Ureaplasma parvum serovar 3
str. ATCC 700970]
gi|168827976|gb|ACA33238.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum
serovar 3 str. ATCC 27815]
gi|182675865|gb|EDT87770.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum
serovar 14 str. ATCC 33697]
Length = 597
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 163/287 (56%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P F++++GQ+L+ QAL NA + K+ Y+F GP G GKTS ARIFA ++NC
Sbjct: 6 LYRKYRPHKFKNVIGQDLIKQALMNACLNNKITHAYIFSGPRGIGKTSIARIFASSINCL 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ + CG C+ C S + +S ++ E+ N + I + DN+ +Y++++
Sbjct: 66 NPNKGDCCGKCSVCESILKEQSVDLIELDAASNNGVDQIRIITDNINYLPTFFKYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +W+A+ K V+ P+ V+FI ++ +P IISRCQ++ F ++ ++++
Sbjct: 126 DEAHMLSTSAWNALLKTVEEPPQHVIFIFATTEYQKIPLTIISRCQRYDFKRLNNSELQE 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
+ I +KE I+ID +A+ + +DGS RD L+QL+ + + I + L+ + GL+ +
Sbjct: 186 LIDSILTKEDIKIDNNAIDKLIQLADGSGRDCLSILDQLTTVKKNIDLDLINKTFGLVDN 245
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
K++ L++L D + + + + GV A Q+ V+ D L
Sbjct: 246 FKVISLIELIQKNDILLLREFIYELYNQGVNLEAFCVQIINVLIDYL 292
>gi|171920146|ref|ZP_02690996.2| DNA polymerase III subunits gamma and tau [Ureaplasma parvum
serovar 1 str. ATCC 27813]
gi|186701643|ref|ZP_02971345.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum
serovar 6 str. ATCC 27818]
gi|171902514|gb|EDT48803.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum
serovar 1 str. ATCC 27813]
gi|186700883|gb|EDU19165.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum
serovar 6 str. ATCC 27818]
Length = 597
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 163/287 (56%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P F++++GQ+L+ QAL NA + K+ Y+F GP G GKTS ARIFA ++NC
Sbjct: 6 LYRKYRPHKFKNVIGQDLIKQALMNACLNNKITHAYIFSGPRGIGKTSIARIFASSINCL 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ + CG C+ C S + +S ++ E+ N + I + DN+ +Y++++
Sbjct: 66 NPNKGDCCGKCSVCESILKEQSVDLIELDAASNNGVDQIRIITDNINYLPTFFKYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +W+A+ K V+ P+ V+FI ++ +P IISRCQ++ F ++ ++++
Sbjct: 126 DEAHMLSTSAWNALLKTVEEPPQHVIFIFATTEYQKIPLTIISRCQRYDFKRLNNSELQE 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
+ I +KE I+ID +A+ + +DGS RD L+QL+ + + I + L+ + GL+ +
Sbjct: 186 LIDSILTKEDIKIDNNAIDKLIQLADGSGRDCLSILDQLTTVKKNIDLDLINKTFGLVDN 245
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
K++ L++L D + + + + GV A Q+ V+ D L
Sbjct: 246 FKVISLIELIQKNDILLLREFIYELYNQGVNLEAFCVQIINVLIDYL 292
>gi|387131745|ref|YP_006297718.1| DNA polymerase III, subunit gamma and tau [Prevotella intermedia
17]
gi|386374593|gb|AFJ07469.1| DNA polymerase III, subunit gamma and tau [Prevotella intermedia
17]
Length = 594
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 190/353 (53%), Gaps = 10/353 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ-SL 472
KY P +F +VGQ + L NAV K+ Y+F GP G GKT+CARIFA+ +NC+
Sbjct: 10 KYRPMSFSTVVGQQALTTTLMNAVKNGKLAHAYLFCGPRGVGKTTCARIFAKTINCEHPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVF 530
EQ + C C SC S + G+S NI E+ N E+I L++ T PP +Y++F+
Sbjct: 70 EQGEACNECESCQSFNEGRSYNIFELDAASNNSVENIKTLMEQ--TRIPPQVGRYKVFII 127
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M + II
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMSVSGIIS 187
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+ +A KEGI ++ AL +IA ++DG +RDA +Q + Q I+ V E + ++
Sbjct: 188 HLKAVAEKEGIAYEEQALNVIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNVLD 247
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAG----SYDFTK 705
E +++DL++ + L ++ G + L++ LA+ + ++L + +
Sbjct: 248 TENYFNIVDLSVENKVPEIMVLLNNVINKGFDAGNLVNGLASHVRNVLMAKDPQTLPLLE 307
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+++ ++ +K + L +AL+ ++ + + R S++K + L+Q+A
Sbjct: 308 TSEQQRQRYQEQAAKCPTQFLYKALEVMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|330833256|ref|YP_004402081.1| DNA polymerase III subunit gamma/tau [Streptococcus suis ST3]
gi|386584658|ref|YP_006081061.1| DNA polymerase III subunit gamma/tau [Streptococcus suis D9]
gi|329307479|gb|AEB81895.1| DNA polymerase III subunit gamma/tau [Streptococcus suis ST3]
gi|353736804|gb|AER17813.1| DNA polymerase III subunit gamma/tau [Streptococcus suis D9]
Length = 555
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 163/292 (55%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA L A+ + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVGGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKVTD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSL-LGQRISVPLVQELV 645
I L I +KEG+ D+ AL +IA R++G +RDA L+Q LSL Q++++ + +E+
Sbjct: 182 IQEHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQALSLSQDQQVTLEIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + D+V +++L+ + + G + L + DIL
Sbjct: 242 GSISLRALDDYVASLRQGDSVTALQHLQTLFDQGKSMSRFATDLLHYLRDIL 293
>gi|427725275|ref|YP_007072552.1| DNA polymerase III subunits gamma and tau [Leptolyngbya sp. PCC
7376]
gi|427356995|gb|AFY39718.1| DNA polymerase III, subunits gamma and tau [Leptolyngbya sp. PCC
7376]
Length = 803
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 115/362 (31%), Positives = 196/362 (54%), Gaps = 13/362 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+ F +LVGQ +A LSNA+ ++++ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQMFSELVGQEAIATTLSNALEKKRIAPAYLFSGPRGTGKTSSARILAKSL 62
Query: 468 NCQSL--EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + P PCG C C + G + ++ E+ N ++I +L++ + +Y
Sbjct: 63 NCLNAANPTPSPCGECEVCRAIANGSALDVIEIDAASNTGVDNIRELIERSQFAPVQCRY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+++V D+C LS +++A+ K ++ P VVF+L ++ + IISRCQ+F + ++
Sbjct: 123 KVYVIDECHMLSVAAFNALLKTLEEPPAHVVFVLATTDPQRVLPTIISRCQRFDYRRIPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
++ L+ IA E IEI +++ L+A ++G LRDAE L+QLSLL I+ V +LV
Sbjct: 183 DAMVGHLRKIARNENIEIPLESVILVAQIANGGLRDAESLLDQLSLLSGEITPDKVWDLV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G + + L+ L+ + S + ++ R ++ G EPL ++ LA+ ++L T
Sbjct: 243 GAVPERDLLGLIQVVRSNNPEAVIQQCRSLLNRGREPLVVLQNLASFYLNLLIAK---TA 299
Query: 706 DRHRRKFFRRQP----LSKE----EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ QP L +E ++ + + + L E+E QL+ + WL LL L
Sbjct: 300 PQRGDLIAVTQPTWQALCQEAQGWDVALILKGQQHLKESEYQLKNTTQPRLWLEITLLGL 359
Query: 758 AP 759
P
Sbjct: 360 LP 361
>gi|427406934|ref|ZP_18897139.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. F0473]
gi|425707907|gb|EKU70950.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. F0473]
Length = 615
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 185/352 (52%), Gaps = 5/352 (1%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P F DLVGQ +++ LS AV + Y+F GP GTGKTS A+I AR+LNC
Sbjct: 6 LYRRWRPECFADLVGQEHISRTLSRAVTSGQTSHAYLFTGPRGTGKTSTAKILARSLNCA 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
PCG C+SC + G S ++ E+ N + I DL + + + +Y+I++
Sbjct: 66 EGPTLSPCGHCDSCRAIGDGSSMDVFEIDAASNRGIDEIRDLRETVKFAPTEGRYKIYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P V+FIL ++ +P I SRCQ++ F ++ +I
Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPPNVLFILATTEPHKVPATIQSRCQRYDFHRITVTEIRD 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L ++ + GI +DAL +IA+ +DG +RDA L+Q S L + ++ VQE +GL+
Sbjct: 186 RLSYVCRESGIAAAEDALGIIAAAADGGMRDALSILDQCSALAEGELTAERVQEALGLVG 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYDFTK 705
+ ++ L + + NL ++++G E ++S+LA ++ G+ +
Sbjct: 246 NTRITQLAMQIADKNAAALLTNLGALLQSGRELKQILSELALYFRSLMIAGVGGTLGAAE 305
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
++ R + E++ + L+ L+E ++LR + A LL L
Sbjct: 306 LYGTQEESLRTAAERFTQEEIMEILRRLNETMRELRSAPQPRIAAEAMLLSL 357
>gi|270307947|ref|YP_003330005.1| DNA polymerase III subunits gamma and tau [Dehalococcoides sp. VS]
gi|270153839|gb|ACZ61677.1| DNA polymerase III, gamma and tau subunits [Dehalococcoides sp. VS]
Length = 562
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 146/541 (26%), Positives = 257/541 (47%), Gaps = 48/541 (8%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q +K+ P+T DLVGQ VA L NA+ ++ Y+F GP GTGKTS RI A+A+N
Sbjct: 7 QVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVN 66
Query: 469 CQSLE-QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
C + + + +PC C C+S G S +I E+ N + I +L + + S + Y++
Sbjct: 67 CTTNQGKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKV 126
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS + +A+ K ++ P RV+FIL ++ + + I+SRCQ+F F ++ +D
Sbjct: 127 YIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLSD 186
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVG 646
+ L I+ E I I+ +ALKLIA + GS RD E L+Q+ + G IS+ VQ +G
Sbjct: 187 MTRKLDKISKAEDINIEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALG 246
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL------AGS 700
+ DE++ L + L D N +K L ++ G++ +L + ++ S
Sbjct: 247 ISGDERIKTLAENILKKDIKNGLKTLNAVVADGLDLKQFRRELLDYLRQVMLVNSGAESS 306
Query: 701 YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760
+ T D ++ + ++ +E + +A+K S QL S+D + L+ +LA
Sbjct: 307 LELTTD-EKKALQKVSAITN--LEGITKAIKAFS----QLDFSSDTASSLS---FELALV 356
Query: 761 QQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGER---AEISNKETGVPMNVRLENFHA 817
+ P ++ T + L A ++ + ++ AE +K HA
Sbjct: 357 DASLNPDTAPATILPQAELPAPKAEKPAVSNEPPQKEAQAETQDKTKDASEPTAASKPHA 416
Query: 818 ENSGDFIDGNMRKGISLDRK-RHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEI---WLE 873
+ S + R I +D K ++T +++ L G + IE++ W
Sbjct: 417 KESAPKL---TRAAIPIDEKLKYTTPAPPKEEEKVLIGAG--------DVIEQLKVSWKN 465
Query: 874 VLNRIQNNGTKEFLYREGKL-ISVSFGAAP------TVQLTFRSHLTKSKAEKFKDQILQ 926
+L++ +N L R + I S G P V L+F+ K K E+ +++ +
Sbjct: 466 ILDQAPDN-----LKRSAAVAILRSAGVRPVSIEKNVVTLSFKYKYHKDKIEELENRKVT 520
Query: 927 A 927
A
Sbjct: 521 A 521
>gi|205371943|ref|ZP_03224762.1| DNA polymerase III subunits gamma and tau [Bacillus coahuilensis
m4-4]
gi|205372023|ref|ZP_03224841.1| DNA polymerase III subunits gamma and tau [Bacillus coahuilensis
m4-4]
Length = 567
Score = 173 bits (438), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 195/356 (54%), Gaps = 5/356 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+TF D+VGQ V Q L NA+++ K+ Y+F GP GTGKTS A+I +A+
Sbjct: 3 YQALYRVWRPQTFEDVVGQQHVTQTLQNALLQDKISHAYLFSGPRGTGKTSAAKILGKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C G +++ E+ N E I D+ D + + ++++
Sbjct: 63 NCERAPIAEPCNECAACKGIMDGSIQDVIEIDAASNNGVEEIRDIRDKVKFAPSAVRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F ++ D
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPKHVMFILATTEPHKIPLTIISRCQRFDFKRITPRD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + +IA++ G+++++ AL +IA ++G +RDA L+Q +S ++ V + G
Sbjct: 183 IVGRMSYIANESGVDVEEQALHVIARAAEGGMRDALSLLDQAISFSDDKVMVGDALTVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ L L + N +++L ++ G +P L+ L D+L + +
Sbjct: 243 AVAQVHLNQLAKAIHEKEASNALQSLEELVNQGKDPSRLVEDLIMYFRDMLLFKTAPSLE 302
Query: 707 RHRRKFF---RRQPLSKE-EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ + + Q L++ + E++ + + L+ A++++R +N +L +L++L+
Sbjct: 303 QSLERVLLDEQFQSLAESIQPEQIYEYIDILNHAQQEMRFTNHTKIYLEVSLVKLS 358
>gi|397906212|ref|ZP_10507030.1| DNA polymerase III subunits gamma and tau [Caloramator australicus
RC3]
gi|397160729|emb|CCJ34365.1| DNA polymerase III subunits gamma and tau [Caloramator australicus
RC3]
Length = 533
Score = 173 bits (438), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 104/311 (33%), Positives = 176/311 (56%), Gaps = 17/311 (5%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P+ F ++VGQ + + L N + + Y+F G GTGKTS ARIFA+A+NC
Sbjct: 5 LYRKWRPQNFDEVVGQEPIVKTLKNQIKAGHISHAYLFSGTRGTGKTSTARIFAKAINCL 64
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIF 528
+ PC C C ++G + E+ N E+ DL+D + S PPS +Y+++
Sbjct: 65 NPIDGNPCNECEICSGINKGTLLDFIEIDAASNNRVENARDLIDTV--SIPPSKAKYKVY 122
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ LS +++A+ K ++ P VFIL ++ +P I+SRCQ+F F ++K +I
Sbjct: 123 IIDEVHMLSTHAFNALLKTLEEPPEYAVFILATTDPQKVPVTILSRCQRFNFKRIKKDEI 182
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVGL 647
L+ I ++ G+EI+++ L LIAS SDG+LRDA L+QL S + +I V ++GL
Sbjct: 183 KERLKLIVNEIGVEIEENVLDLIASNSDGALRDALSLLDQLVSTVSGKIDYESVISILGL 242
Query: 648 ISDEKLVDLLDLALSADTVNTVKNL-RVIME-----TGVEPLA------LMSQLATVITD 695
S E + L+DL + D N++K + ++I+E +E + LM +++ ++
Sbjct: 243 TSKENIFKLVDLIIEKDIQNSLKLVDKIILEGKDINNFIEEIIAHLRNLLMVKVSKNPSE 302
Query: 696 ILAGSYDFTKD 706
I+ S D+ K+
Sbjct: 303 IIDASIDYIKE 313
>gi|386586705|ref|YP_006083107.1| DNA polymerase III subunit gamma/tau [Streptococcus suis D12]
gi|353738851|gb|AER19859.1| DNA polymerase III subunit gamma/tau [Streptococcus suis D12]
Length = 555
Score = 173 bits (438), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 162/286 (56%), Gaps = 6/286 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA L A+ + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVGGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKVTD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSL-LGQRISVPLVQELV 645
I L I +KEG+ D+ AL +IA R++G +RDA L+Q LSL Q++++ + +E+
Sbjct: 182 IQEHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQALSLSQDQQVTLEIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT 691
G IS L D + D+V +++L+ + + G MS+ AT
Sbjct: 242 GSISLRALDDYVASLRQGDSVTALQHLQTLFDQGKS----MSRFAT 283
>gi|417089722|ref|ZP_11955636.1| DNA polymerase III subunit gamma/tau [Streptococcus suis R61]
gi|353533851|gb|EHC03490.1| DNA polymerase III subunit gamma/tau [Streptococcus suis R61]
Length = 555
Score = 173 bits (438), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 162/286 (56%), Gaps = 6/286 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA L A+ + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVGGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKVTD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSL-LGQRISVPLVQELV 645
I L I +KEG+ D+ AL +IA R++G +RDA L+Q LSL Q++++ + +E+
Sbjct: 182 IQEHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQALSLSQDQQVTLEIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT 691
G IS L D + D+V +++L+ + + G MS+ AT
Sbjct: 242 GSISLRALDDYVASLRQGDSVTALQHLQTLFDQGKS----MSRFAT 283
>gi|406882840|gb|EKD30537.1| DNA polymerase III subunit gamma and tau [uncultured bacterium
(gcode 4)]
Length = 497
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 155/272 (56%), Gaps = 2/272 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L QKY P+ F L GQ V + L NA+++ + Y+F+G GTGKT+ ARI A+ +NC
Sbjct: 3 LYQKYRPKDFHSLFGQTFVREVLQNALLQNRTVGAYLFHGSRGTGKTTVARILAKGVNCL 62
Query: 471 SLE-QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFV 529
SL PCG C +C + G +I E+ N ++I D+++ + Y++++
Sbjct: 63 SLTVDGNPCGECQNCRDAENGSLLDIIEIDAASNTGVDNIRDMIERAQFQPTQAPYKVYI 122
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ LS +++A+ K ++ P+ V FIL ++ + +P IISR Q++ F ++K+ DII
Sbjct: 123 IDEVHMLSKGAFNALLKTLEEPPKHVKFILATTEIHKIPDTIISRSQRYDFKRIKNEDII 182
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLIS 649
L +IA E I++++ AL+LIA + LRDA EQ S +G + ++E + LI
Sbjct: 183 ERLHFIAHAEHIQVEESALELIARLAKWGLRDAITLFEQYS-VGGVLKRKYIEENLELIG 241
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVE 681
D+ L D ++ +S D T+KNL + E ++
Sbjct: 242 DDFLSDFIEALISKDQEKTLKNLAFLREKSLD 273
>gi|414158636|ref|ZP_11414930.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. F0441]
gi|410871181|gb|EKS19138.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. F0441]
Length = 551
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 106/337 (31%), Positives = 178/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + I KE I + +A+++IA R++G LRDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIYHILEKENISSEPEAVEIIARRAEGGLRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + +L ++ E G ++ L + D+L
Sbjct: 242 GTISISALDDYVAALSQQDVPKALDSLNLLFENGKSMTRFVTDLLQYLRDLLVVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F LS+E + E +R A +L++ + L+
Sbjct: 302 THHSPVFMDNLALSQESLFEMIRIATVSLADMKASLQ 338
>gi|345883785|ref|ZP_08835214.1| hypothetical protein HMPREF0666_01390 [Prevotella sp. C561]
gi|345043444|gb|EGW47513.1| hypothetical protein HMPREF0666_01390 [Prevotella sp. C561]
Length = 603
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 111/357 (31%), Positives = 189/357 (52%), Gaps = 16/357 (4%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P +F +VGQ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC
Sbjct: 9 RKYRPLSFDAVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC--- 65
Query: 473 EQP----KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYR 526
E P + C C SC + G+S NI E+ N E+I L+D T PP +Y+
Sbjct: 66 EHPTADGEACNECESCKAFSEGRSYNIFELDAASNNSVENIKALMDQ--TRIPPQVGRYK 123
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+F+ D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M
Sbjct: 124 VFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVP 183
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELV 645
+II L+ +A KE I+ +++AL +IA ++DG +RDA +Q + Q I+ V E +
Sbjct: 184 NIIDHLKRVAEKENIQYEEEALSVIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDL 243
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSY 701
++ E +++DLAL + L ++ G + L++ LA+ + ++L A +
Sbjct: 244 NVLDTENYFNIVDLALENKVSEIMVLLNTVINKGFDGGHLVNGLASHVRNVLMAKDAQTL 303
Query: 702 DFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ + + +Q K + L AL+ ++ + + R S++K + L+Q+A
Sbjct: 304 PLLEVSEQLRNRYQQQAQKCPVNFLYTALQIMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|162448237|ref|YP_001621369.1| DNA polymerase III subunits gamma and tau [Acholeplasma laidlawii
PG-8A]
gi|161986344|gb|ABX81993.1| DNA polymerase III, gamma and tau subunit [Acholeplasma laidlawii
PG-8A]
Length = 564
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 106/349 (30%), Positives = 187/349 (53%), Gaps = 11/349 (3%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L + Y P+ F+D+ GQ ++ Q L NA++ K+G Y+F GP GTGKTS A+I A+ALNC
Sbjct: 6 LYRTYRPKFFKDVFGQKVIVQTLQNALLNEKIGHAYIFSGPRGTGKTSVAKIVAKALNCL 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+PCG C+ C+ DRG +I E+ N + I DL D + + +Y++++
Sbjct: 66 EAPAKEPCGKCDVCLGVDRGDVPDIIEIDAASNNGVDEIRDLRDKVKYAPSIGKYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ +++A+ K ++ P+ VVFIL ++ +P I+SRCQ+F F ++ I
Sbjct: 126 DEVHMLTTAAFNALLKTLEEPPKYVVFILATTEPHKVPATILSRCQRFDFKNIEMDQIEE 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLIS 649
L+ I +KE ++I +AL IA ++G +RDA L+Q +S I+ + + G +S
Sbjct: 186 NLKQIINKENLKITPEALTAIARTAEGGMRDALSLLDQVVSFTNDEITEEDIYTVSGGLS 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR 709
+ +LL + + L I++ G +A +++DI+ D D+ R
Sbjct: 246 RRYINELLKVIYLKQPQKALDLLNQIIKDG-------KDIARMVSDIILALRDVLLDKIR 298
Query: 710 RKFFRRQPLSKEEMEKLRQA-LKTLSEAEKQLRMSNDKLTWLTAALLQL 757
++ P K+ L A L L++ +++L+ + K +L AL+++
Sbjct: 299 PD--KKYPDLKDIKPNLIYAYLDILNDLQQELKFTTSKRAYLELALIKM 345
>gi|330837881|ref|YP_004412461.1| DNA polymerase III, subunits gamma and tau [Selenomonas sputigena
ATCC 35185]
gi|329745645|gb|AEB99001.1| DNA polymerase III, subunits gamma and tau [Selenomonas sputigena
ATCC 35185]
Length = 664
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 162/280 (57%), Gaps = 1/280 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P +F+DLVGQ V++ LS+A+ ++ Y+F GP GTGKTS A+I A++LNC+
Sbjct: 6 LYRQWRPGSFKDLVGQTAVSRTLSHAISAGRIAHAYLFSGPRGTGKTSTAKILAKSLNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
P+PCG C +C G + ++ E+ N + + DL + + + +Y++++
Sbjct: 66 KGPTPEPCGVCKNCTKIADGTALDVFEIDAASNRGIDEMRDLREKVKFTPAEGRYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P VVFIL ++ +P I SRCQ+F F ++ +I
Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPAHVVFILATTEPHKVPATIQSRCQRFDFRRITVEEIEA 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVGLIS 649
L ++A + I +K+AL+LIA ++DG +RDA L+Q SL G ++ V+E +GLI
Sbjct: 186 RLAYVAQEMKIPCEKEALRLIARQADGGMRDALSLLDQCASLDGDTLTAACVEENLGLIG 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689
E + L ++ + ++ G +P+ L+++L
Sbjct: 246 HEPIYRLTKAIGERAKGEVLETIAELLALGKDPMQLLAEL 285
>gi|365905397|ref|ZP_09443156.1| DNA polymerase III subunits gamma and tau [Lactobacillus
versmoldensis KCTC 3814]
Length = 570
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 164/291 (56%), Gaps = 1/291 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+TF D+VGQ ++ Q L NAV Y+F GP GTGKTSCA+I A+A+
Sbjct: 3 YQALYRVWRPQTFADVVGQGVITQTLRNAVASNMTSHAYLFSGPRGTGKTSCAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + + + ++ E+ N E I D+ D + + +++++
Sbjct: 63 NCLNPQDGEPCNKCEICKAANENRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTEAKFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR Q F F ++ D
Sbjct: 123 YIIDEVHMLSQGAFNALLKTLEEPPANVMFILATTEPQKIPATIISRTQSFTFRRISRQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ ++ I + + IE D++AL +IA+ ++G +RDA L+Q LS ++++ QE+ G
Sbjct: 183 ILDRMELILNDKEIEYDEEALNIIATSAEGGMRDALSILDQALSFGNDQLTLKNAQEVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+S+E++V + + + + NL I+ +G + + V +I+
Sbjct: 243 ALSNEQIVSYMTAVAENNPADALTNLYKILASGRSAIRFTEMIIRVCRNII 293
>gi|357058057|ref|ZP_09118913.1| hypothetical protein HMPREF9334_00630 [Selenomonas infelix ATCC
43532]
gi|355374364|gb|EHG21660.1| hypothetical protein HMPREF9334_00630 [Selenomonas infelix ATCC
43532]
Length = 618
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 110/374 (29%), Positives = 195/374 (52%), Gaps = 11/374 (2%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P TF DLVGQ ++ L+ AV + Y+F GP GTGKTS A+I ARALNC
Sbjct: 6 LYRRWRPETFADLVGQEHISHTLARAVTMGQTSHAYLFTGPRGTGKTSTAKILARALNCV 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
PCG C+SC S + G S ++ E+ N + I DL +++ + Y+I++
Sbjct: 66 EGPTLTPCGVCDSCRSINDGSSMDVFEIDAASNRGIDEIRDLRESVKFAPAAGHYKIYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P +V+FIL ++ +P I SRCQ++ F ++ +I
Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPPQVLFILATTEPHKVPATIQSRCQRYDFHRITVTEIRD 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRI-SVPLVQELVGLIS 649
L ++ + GI D DAL +IA ++DG +RDA L+Q + L + + + VQE +GL+
Sbjct: 186 RLTYVCQESGITADADALGIIAVQADGGMRDALSILDQCTALAEGVLTAERVQEALGLVG 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYDFTK 705
+ L + D V L +++ G E ++++LA ++ G+ +
Sbjct: 246 NAWTQKLAEQIAERDAAGLVTQLGELLQNGRELKQILAELAQYFRSLMIAGVGGALSAAE 305
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA-PDQQYV 764
+ R+ + +++ L+TL+E +++R + + A L+ L P + V
Sbjct: 306 LTEGQADDLRETAVRFTQDEIMAILQTLNETMQEIRSAPQPRIAVEAMLIGLCRPSEGTV 365
Query: 765 -----LPSSSADTS 773
L S+ ADT+
Sbjct: 366 EVTAPLVSNPADTA 379
>gi|427413412|ref|ZP_18903603.1| DNA polymerase III, subunit gamma and tau [Veillonella ratti
ACS-216-V-Col6b]
gi|425715405|gb|EKU78393.1| DNA polymerase III, subunit gamma and tau [Veillonella ratti
ACS-216-V-Col6b]
Length = 800
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 145/249 (58%), Gaps = 1/249 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P+TF D+VGQ V++ L A+ KV Y+F GP GTGKTS A+IFARA+NC+
Sbjct: 6 LYRKWRPQTFTDVVGQKQVSETLMRAIREDKVAHAYLFSGPRGTGKTSVAKIFARAINCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
PC C SC G+S ++ E+ N + I L +++ + +IF+
Sbjct: 66 KGPTDHPCNECTSCKQILNGQSMDVLEIDAASNRGIDEIRSLRESVKFLPVEGRKKIFII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++W+A+ K ++ P ++FI ++ +D LP I+SRCQ++ F ++ DI
Sbjct: 126 DEAHMLTNEAWNALLKTIEEPPPHIMFIFATTEVDKLPVTILSRCQRYTFRRITAEDIAE 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLS-LLGQRISVPLVQELVGLIS 649
L +A++ I++ DA +LIA +DG LRDA L+Q S + I+ V+ ++GL+
Sbjct: 186 HLLHVATESNIQLAPDAAQLIAIHADGGLRDALSILDQCSGMTKDMITAKTVETMIGLVG 245
Query: 650 DEKLVDLLD 658
E +++ LD
Sbjct: 246 KEWIMEFLD 254
>gi|402833160|ref|ZP_10881780.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. CM52]
gi|402281152|gb|EJU29843.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. CM52]
Length = 686
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 162/280 (57%), Gaps = 1/280 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P +F+DLVGQ V++ LS+A+ ++ Y+F GP GTGKTS A+I A++LNC+
Sbjct: 40 LYRQWRPGSFKDLVGQTAVSRTLSHAISAGRIAHAYLFSGPRGTGKTSTAKILAKSLNCE 99
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
P+PCG C +C G + ++ E+ N + + DL + + + +Y++++
Sbjct: 100 KGPTPEPCGVCKNCTKIADGTALDVFEIDAASNRGIDEMRDLREKVKFTPAEGRYKVYII 159
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P VVFIL ++ +P I SRCQ+F F ++ +I
Sbjct: 160 DEVHMLTTEAFNALLKTLEEPPAHVVFILATTEPHKVPATIQSRCQRFDFRRITVEEIEA 219
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVGLIS 649
L ++A + I +K+AL+LIA ++DG +RDA L+Q SL G ++ V+E +GLI
Sbjct: 220 RLAYVAQEMKIPCEKEALRLIARQADGGMRDALSLLDQCASLDGDTLTAACVEENLGLIG 279
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689
E + L ++ + ++ G +P+ L+++L
Sbjct: 280 HEPIYRLTKSIGERAKGEVLETIAELLALGKDPMQLLAEL 319
>gi|392329534|ref|ZP_10274150.1| DNA polymerase III subunits gamma and tau [Streptococcus canis FSL
Z3-227]
gi|391419406|gb|EIQ82217.1| DNA polymerase III subunits gamma and tau [Streptococcus canis FSL
Z3-227]
Length = 560
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 158/292 (54%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVNGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L W+ KEGI + DAL LIA R++G +RDA L+Q LSL ++++ + +E+
Sbjct: 182 IREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + + L +I ++G + L T + D+L
Sbjct: 242 GSISMLALDDYVQYVSQEQATQALAALEIIYDSGKSMSRFATDLLTYLRDLL 293
>gi|56418552|ref|YP_145870.1| DNA polymerase III subunits gamma and tau [Geobacillus kaustophilus
HTA426]
gi|56378394|dbj|BAD74302.1| DNA-directed DNA polymerase III gamma and tau subunits [Geobacillus
kaustophilus HTA426]
Length = 559
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 101/355 (28%), Positives = 190/355 (53%), Gaps = 5/355 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L +A+++ K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQRFADMVGQEHVTKTLQSALLQHKISHAYLFSGPRGTGKTSAAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C+ G ++ E+ N + I D+ + + + ++Y++
Sbjct: 63 NCEQAPAAEPCNECPACLGITNGTVPDVLEIDAASNNRVDEIRDIREKVKFAPTSARYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F ++
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPTTIISRCQRFDFRRIPLPA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L+++AS +G+E +AL IA +DG +RDA L+Q +S ++ + V + G
Sbjct: 183 IVSRLKYVASAQGVEASDEALSAIARAADGGMRDALSLLDQAISFSDGKLRLDDVLAMTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD-ILAGSYDFTK 705
S L ++ DT ++ L +M G +P L+ L D +L + + +
Sbjct: 243 AASFAALSSFIEAIHRKDTAAVLQQLETMMAQGKDPHRLVEDLILYYRDLLLYKTAPYVE 302
Query: 706 DRHRRKFFRRQPLSKEEM---EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ S EM L +A++ L++++++++ +N L AL++L
Sbjct: 303 GAIQIAVVDEAFTSLSEMIPVSNLYEAIELLNKSQQEMKWTNHPRLLLEVALVKL 357
>gi|375006821|ref|YP_004980449.1| DNA polymerase III (Gamma and tau subunits) [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|359285665|gb|AEV17349.1| DNA polymerase III (Gamma and tau subunits) [Geobacillus
thermoleovorans CCB_US3_UF5]
Length = 560
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 101/355 (28%), Positives = 190/355 (53%), Gaps = 5/355 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L +A+++ K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQRFADMVGQEHVTKTLQSALLQHKISHAYLFSGPRGTGKTSAAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C+ G ++ E+ N + I D+ + + + ++Y++
Sbjct: 63 NCEQAPAAEPCNECPACLGITNGTVPDVLEIDAASNNRVDEIRDIREKVKFAPTSARYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F ++
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPTTIISRCQRFDFRRIPLPA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L+++AS +G+E +AL IA +DG +RDA L+Q +S ++ + V + G
Sbjct: 183 IVSRLKYVASAQGVEASDEALSAIARAADGGMRDALSLLDQAISFSDGKLRLDDVLAMTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD-ILAGSYDFTK 705
S L ++ DT ++ L +M G +P L+ L D +L + + +
Sbjct: 243 AASFAALSSFIEAIHRKDTAAVLQQLETMMAQGKDPHRLVEDLILYYRDLLLYKTAPYVE 302
Query: 706 DRHRRKFFRRQPLSKEEM---EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ S EM L +A++ L++++++++ +N L AL++L
Sbjct: 303 GAIQIAVVDEAFTSLSEMIPVSNLYEAIELLNKSQQEMKWTNHPRLLLEVALVKL 357
>gi|345880805|ref|ZP_08832345.1| hypothetical protein HMPREF9431_01009 [Prevotella oulorum F0390]
gi|343921844|gb|EGV32554.1| hypothetical protein HMPREF9431_01009 [Prevotella oulorum F0390]
Length = 600
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 190/353 (53%), Gaps = 10/353 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS-L 472
KY P +F +VGQ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC++
Sbjct: 10 KYRPMSFDAVVGQESLTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCETPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVF 530
E + C C SC + + G+S NI E+ N E+I L++ T PP +Y++F+
Sbjct: 70 EAGEACNVCESCKAFNEGRSYNIFELDAASNNSVENIKSLMEQ--TRIPPQVGRYKVFII 127
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M +I+
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPNIVA 187
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+ +A+KE + +++AL +IA ++DG +RDA +Q + Q I+ V E + ++
Sbjct: 188 HLKQVAAKENVAFEEEALAVIAEKADGGMRDALSIFDQTASFCQGNITYQKVIEDLNVLD 247
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYDFTK 705
E +LD AL + + L ++ G + ++ LA I ++L A + +
Sbjct: 248 AENYFKVLDYALENKVTDVMVLLNNVLRKGFDGGHFINGLAQHIRNVLMAHDAATLPLLE 307
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+++ +Q K ++ L +ALK L++ + + S++K + L+Q+A
Sbjct: 308 VSQQQQTKYQQQAQKCPVKFLYRALKLLNQCDVNYKQSSNKRLLVELTLIQMA 360
>gi|138893695|ref|YP_001124148.1| DNA polymerase III subunits gamma and tau [Geobacillus
thermodenitrificans NG80-2]
gi|134265208|gb|ABO65403.1| DnaZX [Geobacillus thermodenitrificans NG80-2]
Length = 559
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 191/373 (51%), Gaps = 16/373 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L +A+++ K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQRFADMVGQEHVTKTLQSALLQHKISHAYLFSGPRGTGKTSAAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C C+ G ++ E+ N + I D+ + + + +Y++
Sbjct: 63 NCEHAPAAEPCNECPVCLGITNGTVPDVLEIDAASNNRVDEIRDIREKVKFAPTSVRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPATIISRCQRFDFRRIPLSA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L+++A+ +G+E +AL IA +DG +RDA L+Q +S ++ V V + G
Sbjct: 183 IVSRLKYVANAQGVEASDEALSAIARAADGGMRDALSLLDQAISFSNGKLEVDDVLSMTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--------A 698
S L D + DT ++ +M G +P L+ L D+L
Sbjct: 243 AASFAALADFIGAIYRKDTAAVLQQFETMMAQGKDPNRLVEDLILYCRDLLLYKTAPHVE 302
Query: 699 GSYDF-TKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
G+ D PLS L A++ L++++++++ +N L AL++L
Sbjct: 303 GAIQIAVVDEAFISLSETIPLS-----DLYGAIELLNKSQQEMKWTNHPRLLLEVALVRL 357
Query: 758 APDQQYVLPSSSA 770
Q PS SA
Sbjct: 358 C-HQPAAAPSLSA 369
>gi|261417516|ref|YP_003251198.1| DNA polymerase III subunits gamma/tau [Geobacillus sp. Y412MC61]
gi|297528392|ref|YP_003669667.1| DNA polymerase III subunits gamma/tau [Geobacillus sp. C56-T3]
gi|319765174|ref|YP_004130675.1| DNA polymerase III subunits gamma and tau [Geobacillus sp.
Y412MC52]
gi|448236326|ref|YP_007400384.1| DNA polymerase 3 subunit gamma/tau [Geobacillus sp. GHH01]
gi|261373973|gb|ACX76716.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp.
Y412MC61]
gi|297251644|gb|ADI25090.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp. C56-T3]
gi|317110040|gb|ADU92532.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp.
Y412MC52]
gi|445205168|gb|AGE20633.1| DNA polymerase 3 subunit gamma/tau [Geobacillus sp. GHH01]
Length = 559
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 101/355 (28%), Positives = 190/355 (53%), Gaps = 5/355 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L +A+++ K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQRFADMVGQEHVTKTLQSALLQHKISHAYLFSGPRGTGKTSAAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C+ G ++ E+ N + I D+ + + + ++Y++
Sbjct: 63 NCEQAPAAEPCNECPACLGITNGTVPDVLEIDAASNNRVDEIRDIREKVKFAPTSARYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F ++
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPATIISRCQRFDFRRIPLPA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L+++AS +G+E +AL IA +DG +RDA L+Q +S ++ + V + G
Sbjct: 183 IVSRLKYVASAQGVEASDEALSAIARAADGGMRDALSLLDQAISFSDGKLRLDDVLAMTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD-ILAGSYDFTK 705
S L ++ DT ++ L +M G +P L+ L D +L + + +
Sbjct: 243 AASFAALSSFIEAIHRKDTAAVLQQLETMMAQGKDPHRLVEDLILYYRDLLLYKTAPYVE 302
Query: 706 DRHRRKFFRRQPLSKEEM---EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ S EM L +A++ L++++++++ +N L AL++L
Sbjct: 303 GAIQIAVVDEAFTSLSEMIPVSNLYEAIELLNKSQQEMKWTNHPRLLLEVALVKL 357
>gi|403389620|ref|ZP_10931677.1| DNA polymerase III subunits gamma and tau [Clostridium sp. JC122]
Length = 542
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 191/359 (53%), Gaps = 10/359 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L +K+ P+ F D+VGQN ++ L NA+ ++ Y+ G GTGKTS A+IF++A+
Sbjct: 3 YTALYRKFRPQKFEDVVGQNHISTTLKNAIKSERIAHAYLLCGTRGTGKTSTAKIFSKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP--SQY 525
NC + + +PC C CI + G + ++ E+ + ++I D++D++ PP S+Y
Sbjct: 63 NCLNSQDGEPCNECEMCIKINNGTAIDVVELDAASHNKVDNIRDIIDDV--QYPPQESKY 120
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ LS + +A K ++ P V+FIL ++ LP I+SRCQKF F ++K+
Sbjct: 121 KVYIIDEVHMLSQGAVNAFLKTLEEPPSYVIFILATTDPQKLPITILSRCQKFDFKRIKN 180
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQEL 644
DI L+ I G+ + +LKLI+ DG++RDA L+Q +S+ ++ + ++
Sbjct: 181 DDIFLRLKQITDILGVYAEDKSLKLISRICDGAMRDALSILDQAISMSNNKVEYENIVKM 240
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT 704
+GL++++ L+ L D +S D VK + + +G + + + D++ +
Sbjct: 241 LGLMTNDDLITLTDFIISKDIEGAVKTINNAISSGKDVNLFIKDFTKHMRDLMMVKVTES 300
Query: 705 KDRHRRKFFRRQPLSKEEMEKLR-----QALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ L K + EKLR + +K L + E+ + S +L A++++
Sbjct: 301 PEEVLEMSIENIELLKLQSEKLRVEEIMRYIKILQDTEENAKYSKQGRIYLELAIIKMC 359
>gi|410669194|ref|YP_006921565.1| DNA polymerase III subunit gamma/tau [Thermacetogenium phaeum DSM
12270]
gi|409106941|gb|AFV13066.1| DNA polymerase III subunit gamma/tau [Thermacetogenium phaeum DSM
12270]
Length = 626
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 159/288 (55%), Gaps = 1/288 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P+ FRD++GQ V++ L NAV+ ++ Y+F GP GTGKTS ARI ARALNC
Sbjct: 6 LYREWRPQLFRDVIGQEHVSRTLKNAVVLGRIAHAYLFCGPRGTGKTSTARILARALNCT 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
L+ +PC C SC S G S N+ E+ + E I +L + + +Y++++
Sbjct: 66 DLQNGEPCNRCPSCRSISAGISLNVIEMDAASHRGIEEIRELRQKVGMAPGGGRYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P VFIL ++ +P I+SRCQ+F F ++ + I
Sbjct: 126 DEVHMLTGEAFNALLKTLEEPPAHAVFILATTEAQKVPLTILSRCQRFDFRRLDRSLIKG 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLIS 649
L IA ++G E + AL LI+ ++ G+LRDA L+Q S G RI + V+ L G
Sbjct: 186 HLARIAREKGWEAEDAALDLISRQAGGALRDALGLLDQAASFAGGRIRLEDVEMLTGAPR 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
E L L+ D ++ L + G EP + QLA + D+L
Sbjct: 246 QEVLDGLIAAVAGGDVPALMEQLDGLFARGYEPRRALLQLADRLRDLL 293
>gi|108805246|ref|YP_645183.1| DNA polymerase III subunits gamma and tau [Rubrobacter xylanophilus
DSM 9941]
gi|108766489|gb|ABG05371.1| DNA polymerase III, subunits gamma and tau [Rubrobacter
xylanophilus DSM 9941]
Length = 567
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 151/271 (55%), Gaps = 6/271 (2%)
Query: 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466
+H L +++ PRTF ++ GQ V + L A+ +V Y+F GP GTGKTS A++ A
Sbjct: 2 KHATLYRRWRPRTFGEIAGQEPVVRTLRRAIETGRVAHAYLFSGPRGTGKTSTAKVLAMG 61
Query: 467 LNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYR 526
LNC P+PCG C SC S G S ++ E+ N + I +L D + + + +
Sbjct: 62 LNCAQGPTPEPCGRCESCRSIVAGSSMDVIEMDAASNRGIDEIRELRDRVNLAPAAGRAK 121
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+++ D+ L+ ++++A+ K+++ P VVF+L ++ + IISRCQ F F +
Sbjct: 122 VYIIDEVHMLTTEAFNALLKMLEEPPEHVVFVLATTEKHKVLPTIISRCQSFDFRRPGVG 181
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELV 645
++ L IA EGIE +++AL IA S GS RDAE L+Q+S + R++V LV+EL+
Sbjct: 182 TLVEKLSEIARAEGIEAEREALTAIARASGGSFRDAEGMLDQISSFSEGRVTVALVRELL 241
Query: 646 GLISDEKLVDLLDLAL----SADTVNTVKNL 672
G E L + D AL +AD + V L
Sbjct: 242 GSAGPEMLAETAD-ALHERRAADALRVVDRL 271
>gi|317055948|ref|YP_004104415.1| DNA polymerase III subunits gamma and tau [Ruminococcus albus 7]
gi|315448217|gb|ADU21781.1| DNA polymerase III, subunits gamma and tau [Ruminococcus albus 7]
Length = 532
Score = 172 bits (437), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 185/356 (51%), Gaps = 14/356 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+TF D+V Q + L N ++ K Y+F G GTGKT+CARIFA+A+
Sbjct: 2 YQALYRKWRPKTFDDVVSQPHITTTLKNQIIGGKTAHAYLFTGSRGTGKTTCARIFAKAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + PC C C + D G +I E+ N I +L + ++ + +Y++
Sbjct: 62 NCEHGKDGMPCCECEICKAADNGSLGDIIEIDAASNASVNDIRELREGVMFTPEMCKYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V FIL ++ + +P I+SRCQ F F ++K D
Sbjct: 122 YIIDEVHMLSVGAFNALLKTMEEPPPHVKFILATTEIQKVPATIVSRCQHFDFNRIKTED 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGL 647
I+ L +IA +EG + +DA +LIA SDG +RDA L+Q I++ V G+
Sbjct: 182 IVARLTYIAGQEGFTLHEDAAELIARLSDGGMRDALSLLDQCVAFSDDITIDTVSNASGI 241
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVI--METGVEPLA--LMSQLATVITDILAGSYDF 703
+ L D+L+ D +K + + M ++ LA L+ Q+ V +LA + D
Sbjct: 242 AGRDYLFDILESIADKDAAGALKRINELHSMSKDLKVLAGELLEQMRNV---MLAATID- 297
Query: 704 TKDRHRRKFFRRQPLSKEEMEKL--RQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ R+ P + +E + + +L + L+ S+DKL T+ ++L
Sbjct: 298 ----NGRELITCLPDEMKRIEDIAHKMSLNEILGCISLLQESSDKLARSTSKRIEL 349
>gi|259048077|ref|ZP_05738478.1| DNA polymerase III, gamma and tau subunits [Granulicatella adiacens
ATCC 49175]
gi|259035138|gb|EEW36393.1| DNA polymerase III, gamma and tau subunits [Granulicatella adiacens
ATCC 49175]
Length = 572
Score = 172 bits (437), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 99/362 (27%), Positives = 191/362 (52%), Gaps = 7/362 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+TF D+VGQ+ V L NA+ +K Y+F GP GTGKTS A++FA+A+
Sbjct: 3 YQALYRKWRPQTFDDMVGQSAVTHTLKNAISNQKTSHAYLFTGPRGTGKTSAAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C G ++ E+ N E I D+ D + ++Y+I
Sbjct: 63 NCPNQKNGEPCNECEICKGITNGTIGDVIEIDAASNNGVEEIRDIRDKARYAPTQAEYKI 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P++V+FIL ++ +P IISR Q+F F ++ +
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPQKVIFILATTEPHKIPATIISRTQRFDFRRITSQE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
II L +I +EGI + DAL ++A ++G +RDA L+Q+ G +++ ++ G
Sbjct: 183 IIDRLAYILDQEGIPYEADALSVVARCANGGMRDALSLLDQMISFGDGKVTFEEAIQVSG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++D+ ++D + + +++L+ + + G E L+ + D+L
Sbjct: 243 SLTDDLMIDFVADLQAQKAEEALESLQQLFKMGKEASRLVEEWLEFARDLLVAKQSGEAV 302
Query: 707 RHRRKFFRRQPLSKEEMEK--LRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYV 764
+F + K+E++ L + ++ L++ ++++R + L +++A Q
Sbjct: 303 GRSERFLQ----FKDEVDAAFLYRFVEALNQTQQEMRFTTKPTISLEVLTIKMAQPQTSA 358
Query: 765 LP 766
P
Sbjct: 359 SP 360
>gi|374321494|ref|YP_005074623.1| DNA polymerase III subunit gamma/tau [Paenibacillus terrae HPL-003]
gi|357200503|gb|AET58400.1| DNA polymerase III subunit gamma/tau [Paenibacillus terrae HPL-003]
Length = 583
Score = 172 bits (437), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 179/357 (50%), Gaps = 9/357 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H L + + P++F+D+VGQ + Q L NA+ + Y+F GP GTGKTS A+I A+A+
Sbjct: 3 HIALYRAWRPQSFKDMVGQQHIIQTLQNAIRENRTSHAYLFSGPRGTGKTSAAKILAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ P+PC C +C G +++E+ N E I DL D + + ++++
Sbjct: 63 NCEHGPAPEPCNECEACKRITAGAVMDVQEIDAASNRGVEEIRDLRDKVKYAPTEVRHKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+FIL ++ +P IISRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHRIPATIISRCQRFDFRRVSLEE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVG 646
L I +E IE D DAL+ IA SDG +RDA L+Q+ S R++ V ++ G
Sbjct: 183 QTERLDLICRQENIEADSDALQYIARLSDGGMRDALSVLDQISSFTDGRVTYQQVLDMTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
I+ E+ L L D ++ + M+ G M L D+L
Sbjct: 243 GIASEQFGKLALALLKEDVSTVLQMIENFMQEGKSADKCMENLLYYFRDLLMIKMVPQAT 302
Query: 707 RHRRKFFRRQPLSKEEM------EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ + +P +E+ E+L + TL+ + +++ + T ALL+L
Sbjct: 303 KMTERVL--EPEQFKEVAEAFTKEQLFSMIDTLNRYQSEMKYAVQPQTLFEVALLKL 357
>gi|358465093|ref|ZP_09175050.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. oral
taxon 058 str. F0407]
gi|357066167|gb|EHI76325.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. oral
taxon 058 str. F0407]
Length = 552
Score = 172 bits (437), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 178/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I+ + I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IMAHIYHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNALTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALDALNLLFENGKSMTRFVTDLLQYLRDLLVVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F LS+E + E +R A +L++ + L+
Sbjct: 302 THHSPVFMDNLALSQESLFEMIRLATVSLADMKASLQ 338
>gi|196251181|ref|ZP_03149856.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp.
G11MC16]
gi|196209307|gb|EDY04091.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp.
G11MC16]
Length = 559
Score = 172 bits (437), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 191/373 (51%), Gaps = 16/373 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L +A+++ K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQRFADMVGQEHVTKTLQSALLQHKISHAYLFSGPRGTGKTSAAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C C+ G ++ E+ N + I D+ + + + +Y++
Sbjct: 63 NCEHAPAAEPCNECPVCLGITNGMVPDVLEIDAASNNRVDEIRDIREKVKFAPTSVRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPATIISRCQRFDFRRIPLSA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L+++A+ +G+E +AL IA +DG +RDA L+Q +S ++ V V + G
Sbjct: 183 IVSRLKYVANAQGVEASDEALSAIARAADGGMRDALSLLDQAISFSNGKLEVDDVLSMTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--------A 698
S L D + DT ++ +M G +P L+ L D+L
Sbjct: 243 AASFAALADFIGAIYRKDTAAVLQQFETMMAQGKDPNRLVEDLILYCRDLLLYKTAPHVE 302
Query: 699 GSYDF-TKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
G+ D PLS L A++ L++++++++ +N L AL++L
Sbjct: 303 GAIQIAVVDEAFISLSETIPLS-----DLYGAIELLNKSQQEMKWTNHPRLLLEVALVRL 357
Query: 758 APDQQYVLPSSSA 770
Q PS SA
Sbjct: 358 C-HQPAAAPSLSA 369
>gi|450036137|ref|ZP_21835354.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
M21]
gi|449194523|gb|EMB95877.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
M21]
Length = 558
Score = 172 bits (437), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCSHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|389857134|ref|YP_006359377.1| DNA polymerase III subunits gamma and tau [Streptococcus suis ST1]
gi|353740852|gb|AER21859.1| DNA polymerase III subunits gamma and tau [Streptococcus suis ST1]
Length = 555
Score = 172 bits (437), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 162/286 (56%), Gaps = 6/286 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA L A+ + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVGGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKVTD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSL-LGQRISVPLVQELV 645
I L I +KEG+ D+ AL +IA R++G +RDA L+Q LSL Q++++ + +E+
Sbjct: 182 IQEHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQALSLSQDQQVTLEIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT 691
G IS L D + D+V +++L+ + + G MS+ AT
Sbjct: 242 GSISLRALDDYVASLRQGDSVTALQHLQTLFDQGKS----MSRFAT 283
>gi|449975717|ref|ZP_21815933.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
11VS1]
gi|449176426|gb|EMB78772.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
11VS1]
Length = 558
Score = 172 bits (436), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCSHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|322392118|ref|ZP_08065580.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus peroris
ATCC 700780]
gi|321145018|gb|EFX40417.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus peroris
ATCC 700780]
Length = 554
Score = 172 bits (436), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 160/292 (54%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ ++A+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVIARTLKQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I D+ D + +QY++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIRDIRDKSTYAPSIAQYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTPNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR--ISVPLVQELV 645
I + +I KEGI+ + +A+++IA R++G +RDA L+Q L Q ++ + +E+
Sbjct: 182 IRDHIFYILEKEGIDYETEAVEIIARRAEGGMRDALSILDQALSLTQEATLTTAVSEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + + + D ++NL +I E G + L + DIL
Sbjct: 242 GTISLSALDNYVAALVQKDVTGALENLDLIFENGKSMTRFVVDLLQYLRDIL 293
>gi|449972091|ref|ZP_21814636.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
2VS1]
gi|450030987|ref|ZP_21833503.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
G123]
gi|450056380|ref|ZP_21841997.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NLML4]
gi|450067447|ref|ZP_21846634.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NLML9]
gi|449171145|gb|EMB73820.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
2VS1]
gi|449192039|gb|EMB93479.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
G123]
gi|449206750|gb|EMC07443.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NLML4]
gi|449208006|gb|EMC08642.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NLML9]
Length = 558
Score = 172 bits (436), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCSHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|303235528|ref|ZP_07322137.1| DNA polymerase III, subunit gamma and tau [Prevotella disiens
FB035-09AN]
gi|302484265|gb|EFL47251.1| DNA polymerase III, subunit gamma and tau [Prevotella disiens
FB035-09AN]
Length = 596
Score = 172 bits (436), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 110/355 (30%), Positives = 189/355 (53%), Gaps = 14/355 (3%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ-SL 472
KY P +F +VGQ + L NAV K+ Y+F GP G GKT+CARIFA+ +NC+
Sbjct: 10 KYRPMSFASVVGQQALTTTLMNAVKNGKLAHAYLFCGPRGVGKTTCARIFAKTINCEHPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVF 530
+ + C C SC S D G+S NI E+ N E+I L++ T PP +Y++F+
Sbjct: 70 AEGEACNECESCKSFDEGRSYNIFELDAASNNSVENIKSLMEQ--TRIPPQLGKYKVFII 127
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M II
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMSVQGIIN 187
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+ +A KEGI+ ++ AL +IA ++DG +RDA +Q + Q I+ V E + ++
Sbjct: 188 HLKQVAEKEGIKYEEQALNVIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNVLD 247
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYDF-- 703
+E +++DL+L + L + G + L+ LA+ + ++L A +
Sbjct: 248 EENYFNIVDLSLQNKVPEIMVLLNHCINKGFDGGNLVLGLASHVRNVLMAKDAQTLPLLE 307
Query: 704 TKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
T ++ R+++ + K L +AL+ ++ + + R S++K + L+Q+A
Sbjct: 308 TSEQMRQRYHEQA--QKCPTPFLYKALEIMNRCDVEYRQSSNKRLLVEITLIQVA 360
>gi|218289068|ref|ZP_03493305.1| DNA polymerase III, subunits gamma and tau [Alicyclobacillus
acidocaldarius LAA1]
gi|218240893|gb|EED08071.1| DNA polymerase III, subunits gamma and tau [Alicyclobacillus
acidocaldarius LAA1]
Length = 583
Score = 172 bits (436), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 119/401 (29%), Positives = 203/401 (50%), Gaps = 20/401 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + Y P+TF DLVGQ V Q L+NA+ ++ Y+F GP GTGKTS A++ A+A+
Sbjct: 3 YQALYRAYRPQTFEDLVGQPHVRQTLTNALKSGQLAHAYLFCGPRGTGKTSTAKLLAKAV 62
Query: 468 NC-QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYR 526
NC Q + +PC C +C+S RG + +++E+ N + I DL D++ ++ +
Sbjct: 63 NCLQPRDGFEPCNACEACMSIQRGSNVDVQEIDAASNRGVDEIRDLRDHVHYLPTMAKKK 122
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+++ D+ L+P++++A+ K ++ P V+F+L ++ LP IISRCQ+F F ++
Sbjct: 123 VYIVDEVHMLTPEAFNALLKTLEEPPAHVLFVLATTEPHRLPATIISRCQRFDFRRIAPE 182
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELV 645
I+ L+ +A +GIE AL +A +DG LRDA EQ + G RI V ++V
Sbjct: 183 AIVERLRLVAQSQGIEAADSALWRLAEAADGGLRDALALFEQAAAFGNGRIDDATVADVV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G + LV L+ ++ + L +G + ++ L V+ D+ ++
Sbjct: 243 GSVDIGSLVALVGDLAGRSFLSAMDRLGRWYASGKDASRIVHDLLQVVRDLFI--VKLSQ 300
Query: 706 DRHR---RKFFRRQPLSKEE---MEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759
H + QP++ + + L A++ L E QLR + L A L+ LA
Sbjct: 301 SPHALAGKPIDPYQPVASRDDVTTDWLLAAMRRLGELYTQLRYVEEPRLALEAVLMGLAA 360
Query: 760 DQQ---YVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERA 797
+++ V P+ S D + + A RG G+ A
Sbjct: 361 ERRSPDAVDPAGSVDPART-------GAANRGAAHPSGQSA 394
>gi|260887501|ref|ZP_05898764.1| DNA polymerase III, gamma and tau subunit [Selenomonas sputigena
ATCC 35185]
gi|260862788|gb|EEX77288.1| DNA polymerase III, gamma and tau subunit [Selenomonas sputigena
ATCC 35185]
Length = 691
Score = 172 bits (436), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 162/280 (57%), Gaps = 1/280 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P +F+DLVGQ V++ LS+A+ ++ Y+F GP GTGKTS A+I A++LNC+
Sbjct: 33 LYRQWRPGSFKDLVGQTAVSRTLSHAISAGRIAHAYLFSGPRGTGKTSTAKILAKSLNCE 92
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
P+PCG C +C G + ++ E+ N + + DL + + + +Y++++
Sbjct: 93 KGPTPEPCGVCKNCTKIADGTALDVFEIDAASNRGIDEMRDLREKVKFTPAEGRYKVYII 152
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P VVFIL ++ +P I SRCQ+F F ++ +I
Sbjct: 153 DEVHMLTTEAFNALLKTLEEPPAHVVFILATTEPHKVPATIQSRCQRFDFRRITVEEIEA 212
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVGLIS 649
L ++A + I +K+AL+LIA ++DG +RDA L+Q SL G ++ V+E +GLI
Sbjct: 213 RLAYVAQEMKIPCEKEALRLIARQADGGMRDALSLLDQCASLDGDTLTAACVEENLGLIG 272
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689
E + L ++ + ++ G +P+ L+++L
Sbjct: 273 HEPIYRLTKAIGERAKGEVLETIAELLALGKDPMQLLAEL 312
>gi|449979722|ref|ZP_21816869.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
5SM3]
gi|449177648|gb|EMB79940.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
5SM3]
Length = 558
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCSHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILEKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|450105297|ref|ZP_21859809.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SF14]
gi|449224898|gb|EMC24522.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SF14]
Length = 558
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSCFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|450111507|ref|ZP_21862734.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SM6]
gi|449223754|gb|EMC23425.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SM6]
Length = 558
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCSHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|449894307|ref|ZP_21789183.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SF12]
gi|449255434|gb|EMC53289.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SF12]
Length = 558
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL IS+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDISLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|146319281|ref|YP_001198993.1| DNA polymerase III subunits gamma and tau [Streptococcus suis
05ZYH33]
gi|146321485|ref|YP_001201196.1| DNA polymerase III subunits gamma and tau [Streptococcus suis
98HAH33]
gi|253752319|ref|YP_003025460.1| DNA polymerase III subunits gamma and tau [Streptococcus suis SC84]
gi|253754145|ref|YP_003027286.1| DNA polymerase III subunits gamma and tau [Streptococcus suis P1/7]
gi|253756079|ref|YP_003029219.1| DNA polymerase III subunits gamma and tau [Streptococcus suis
BM407]
gi|386578451|ref|YP_006074857.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|386580523|ref|YP_006076928.1| DNA polymerase III subunits gamma and tau [Streptococcus suis JS14]
gi|386588720|ref|YP_006085121.1| DNA polymerase III subunits gamma and tau [Streptococcus suis A7]
gi|403062069|ref|YP_006650285.1| DNA polymerase III subunits gamma and tau [Streptococcus suis S735]
gi|145690087|gb|ABP90593.1| DNA polymerase III, gamma/tau subunits [Streptococcus suis 05ZYH33]
gi|145692291|gb|ABP92796.1| DNA polymerase III, gamma/tau subunits [Streptococcus suis 98HAH33]
gi|251816608|emb|CAZ52246.1| DNA polymerase III subunit gamma/tau [Streptococcus suis SC84]
gi|251818543|emb|CAZ56374.1| DNA polymerase III subunit gamma/tau [Streptococcus suis BM407]
gi|251820391|emb|CAR46990.1| DNA polymerase III subunit gamma/tau [Streptococcus suis P1/7]
gi|292558914|gb|ADE31915.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|319758715|gb|ADV70657.1| DNA polymerase III subunits gamma and tau [Streptococcus suis JS14]
gi|354985881|gb|AER44779.1| DNA polymerase III subunits gamma and tau [Streptococcus suis A7]
gi|402809395|gb|AFR00887.1| DNA polymerase III subunits gamma and tau [Streptococcus suis S735]
Length = 555
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 162/286 (56%), Gaps = 6/286 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA L A+ + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVGGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKVTD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSL-LGQRISVPLVQELV 645
I L I +KEG+ D+ AL +IA R++G +RDA L+Q LSL Q++++ + +E+
Sbjct: 182 IQEHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQALSLSQDQQVTLEIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT 691
G IS L D + D+V +++L+ + + G MS+ AT
Sbjct: 242 GSISLRALDDYVASLRQGDSVTALQHLQTLFDQGKS----MSRFAT 283
>gi|312109169|ref|YP_003987485.1| DNA polymerase III subunits gamma/tau [Geobacillus sp. Y4.1MC1]
gi|336233564|ref|YP_004586180.1| DNA polymerase III subunits gamma and tau [Geobacillus
thermoglucosidasius C56-YS93]
gi|423718290|ref|ZP_17692472.1| DNA polymerase III, subunits gamma and tau [Geobacillus
thermoglucosidans TNO-09.020]
gi|311214270|gb|ADP72874.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp.
Y4.1MC1]
gi|335360419|gb|AEH46099.1| DNA polymerase III, subunits gamma and tau [Geobacillus
thermoglucosidasius C56-YS93]
gi|383365287|gb|EID42585.1| DNA polymerase III, subunits gamma and tau [Geobacillus
thermoglucosidans TNO-09.020]
Length = 561
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 108/370 (29%), Positives = 191/370 (51%), Gaps = 27/370 (7%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L +A+++ K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQRFADVVGQEHVTKTLQSALLQNKISHAYLFSGPRGTGKTSAAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +CI G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPTAEPCNECPACIGITNGTIPDVLEIDAASNNRVDEIRDIRDKVKFAPTSVRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F ++
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRCQRFDFRRIPLHS 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRIS-------VPL 640
I+ L+ + ++G+ +AL IA +DG +RDA LSLL Q IS +
Sbjct: 183 IVARLRHVMEQQGMTASDEALFAIARAADGGMRDA------LSLLDQAISFSDGELLLED 236
Query: 641 VQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--- 697
V + G +S L L+ D +++ L +M+ G +P LM L D+L
Sbjct: 237 VLAMTGSVSSATLASLIQAVYEKDAATSLRLLEEMMDQGKDPNRLMEDLILYYRDLLLYK 296
Query: 698 -----AGSYDFT-KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLT 751
G+ T D + PLS + +A++ L++++++++ +N +L
Sbjct: 297 TAPHVEGAIKGTIVDDTFQHLAESIPLS-----DIYEAIEVLNKSQQEMKWTNHPRIFLE 351
Query: 752 AALLQLAPDQ 761
AL++L Q
Sbjct: 352 VALVKLCHQQ 361
>gi|434408329|ref|YP_007151393.1| DNA polymerase III, subunits gamma and tau [Stanieria cyanosphaera
PCC 7437]
gi|428272082|gb|AFZ38022.1| DNA polymerase III, subunits gamma and tau [Stanieria cyanosphaera
PCC 7437]
Length = 461
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 113/360 (31%), Positives = 192/360 (53%), Gaps = 15/360 (4%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
++L KY P+ DL+GQ + L NA+ +K+ Y+F GP GTGKTS ARI A++LN
Sbjct: 2 KSLPLKYRPQQLEDLIGQEFIKTTLKNALSAKKIAPAYLFSGPRGTGKTSTARILAKSLN 61
Query: 469 CQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ-- 524
C ++EQP KPCG C+SC S +R + ++ E+ + ++ +L++ ++ P+Q
Sbjct: 62 CLAVEQPTIKPCGECSSCRSIERSNAIDVTEIDAASHNGVDNARELIE--LSHLAPAQVR 119
Query: 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMK 584
Y++F+ D+ L+ + + + K+++ P R +FIL ++ L + I+SRCQ F F +
Sbjct: 120 YKVFILDESQMLTSAAQNTLLKLLEEPPERTIFILCTTELHKILPTIVSRCQLFNFKSLS 179
Query: 585 DADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQEL 644
+I L IA+ E I++ +A+ I+ GSLRD+ L QL +L Q+I++ V E
Sbjct: 180 QTAVIDYLSQIATTEEIDLTPEAIAAISKSGLGSLRDSLQLLSQLQVLRQQITLDNVIEA 239
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA------ 698
VG IS +++ L+ + D +N + R +++ G P ++ L D+L
Sbjct: 240 VGGISSQQMWKLMTNLVKEDVLNVLLIARNLIQMGKSPQLILQDLLNCHRDLLLVKATQK 299
Query: 699 -GSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
G + + K Q SK + + L+ L + E+QLR S + WL LL +
Sbjct: 300 DGKSLLSSNLEYSKL--DQLASKISWHHIERNLEQLQKREQQLRFSINNAVWLETCLLNM 357
>gi|71903770|ref|YP_280573.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
MGAS6180]
gi|71802865|gb|AAX72218.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes
MGAS6180]
Length = 561
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/362 (29%), Positives = 182/362 (50%), Gaps = 5/362 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L W+ KEGI + DAL LIA R++G +RDA L+Q LSL ++++ + +E+
Sbjct: 182 IREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + + L I ++G + L T + D+L
Sbjct: 242 GSISMLALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLLVVKAGGDN 301
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVL 765
R F LS ++++ Q + ++ +++ + +QLA ++ L
Sbjct: 302 QRQSAVFDTNLSLS---IDRIFQMITVVTSHLPEIKKGTHPRIYAEMMTIQLAKEEGVAL 358
Query: 766 PS 767
PS
Sbjct: 359 PS 360
>gi|308179718|ref|YP_003923846.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|308045209|gb|ADN97752.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus plantarum
subsp. plantarum ST-III]
Length = 565
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 191/361 (52%), Gaps = 15/361 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L + + P+ F ++VGQ ++ Q L NA+M + Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YRALYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAI 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC L +PC C +C + +G+ ++ E+ N E I D+ D + + Y++
Sbjct: 62 NCHHLVDGEPCNECETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV-- 645
+ +I +++ + D+ AL++IA+ ++G +RDA L+Q+ G +V L L+
Sbjct: 182 SYDRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDN-TVTLDDALMVT 240
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-------- 697
G ++ + L + + DT ++ +R I++ G + + L + D+L
Sbjct: 241 GSVTKQLLANYVSEVTDHDTKPALETMRQILQEGKDANRFIEDLISYTRDVLLYQQAPEM 300
Query: 698 AGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
S +D + + F +Q + E L Q +KTL++ ++Q+R + +L ++L
Sbjct: 301 VDSVAMGEDDQQFEAFAKQI----DAEVLYQMVKTLNDIQQQMRFTTHPDVYLEVLTVKL 356
Query: 758 A 758
A
Sbjct: 357 A 357
>gi|254555739|ref|YP_003062156.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
plantarum JDM1]
gi|254044666|gb|ACT61459.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
plantarum JDM1]
Length = 565
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 191/361 (52%), Gaps = 15/361 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L + + P+ F ++VGQ ++ Q L NA+M + Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YRALYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAI 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC L +PC C +C + +G+ ++ E+ N E I D+ D + + Y++
Sbjct: 62 NCHHLVDGEPCNECETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV-- 645
+ +I +++ + D+ AL++IA+ ++G +RDA L+Q+ G +V L L+
Sbjct: 182 SYDRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDN-TVTLDDALMVT 240
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-------- 697
G ++ + L + + DT ++ +R I++ G + + L + D+L
Sbjct: 241 GSVTKQLLANYVSEVTDHDTKPALETMRQILQEGKDANRFIEDLISYTRDVLLYQQAPEM 300
Query: 698 AGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
S +D + + F +Q + E L Q +KTL++ ++Q+R + +L ++L
Sbjct: 301 VDSVAMGEDDQQFEAFAKQI----DAEVLYQMVKTLNDIQQQMRFTTHPDVYLEVLTVKL 356
Query: 758 A 758
A
Sbjct: 357 A 357
>gi|300769760|ref|ZP_07079642.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|300492668|gb|EFK27854.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
Length = 569
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 191/361 (52%), Gaps = 15/361 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L + + P+ F ++VGQ ++ Q L NA+M + Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YRALYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAI 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC L +PC C +C + +G+ ++ E+ N E I D+ D + + Y++
Sbjct: 62 NCHHLVDGEPCNECETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV-- 645
+ +I +++ + D+ AL++IA+ ++G +RDA L+Q+ G +V L L+
Sbjct: 182 SYDRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDN-TVTLDDALMVT 240
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-------- 697
G ++ + L + + DT ++ +R I++ G + + L + D+L
Sbjct: 241 GSVTKQLLANYVSEVTDHDTKPALETMRQILQEGKDANRFIEDLISYTRDVLLYQQAPEM 300
Query: 698 AGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
S +D + + F +Q + E L Q +KTL++ ++Q+R + +L ++L
Sbjct: 301 VDSVAMGEDDQQFEAFAKQI----DAEVLYQMVKTLNDIQQQMRFTTHPDVYLEVLTVKL 356
Query: 758 A 758
A
Sbjct: 357 A 357
>gi|339301690|ref|ZP_08650780.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus
agalactiae ATCC 13813]
gi|417005101|ref|ZP_11943694.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
FSL S3-026]
gi|319744863|gb|EFV97199.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus
agalactiae ATCC 13813]
gi|341576914|gb|EGS27322.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
FSL S3-026]
Length = 554
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 158/286 (55%), Gaps = 6/286 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVSSKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVNGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKLLA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L I KE I D DAL L+A R++G +RDA L+Q LSL IS+ + +E+
Sbjct: 182 IRDHLAQILDKEAISYDLDALTLVARRAEGGMRDALSILDQALSLAKDNHISLDVAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT 691
G IS + D + L+ DT + L VI ++G MS+ AT
Sbjct: 242 GSISLSAIDDYVSNILAHDTTEALAKLEVIFDSGKS----MSRFAT 283
>gi|238926315|ref|ZP_04658075.1| DNA polymerase III, subunits gamma and tau [Selenomonas flueggei
ATCC 43531]
gi|238885719|gb|EEQ49357.1| DNA polymerase III, subunits gamma and tau [Selenomonas flueggei
ATCC 43531]
Length = 615
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 161/288 (55%), Gaps = 1/288 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P F DLVGQ +++ LS AV ++ Y+F GP GTGKTS A+I ARALNC
Sbjct: 6 LYRRWRPERFADLVGQEHISRTLSRAVTSGQISHAYLFTGPRGTGKTSTAKILARALNCA 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
PCG C+SC S G S ++ E+ N + I DL +++ + Y+I++
Sbjct: 66 EGPTLTPCGHCDSCRSISDGSSMDVFEIDAASNRGIDEIRDLRESVKFAPTEGLYKIYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P RV+FIL ++ +P I SRCQ++ F ++ +I
Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRCQRYDFHRITVTEICD 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L ++ + GIE ++DAL +IA ++DG +RDA L+Q + L + ++ VQE +GL+
Sbjct: 186 RLIYVCKESGIEAEEDALGIIAVQADGGMRDALSILDQCTALAEGTLTAERVQEALGLVG 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+ + + + D + L +++ G E ++ +LA ++
Sbjct: 246 RAWIRQMAEQIAARDAAALITQLSQLLQNGRELRQVLVELAQYFRSLM 293
>gi|339626453|ref|YP_004718096.1| DNA polymerase III subunits gamma and tau [Sulfobacillus
acidophilus TPY]
gi|379005911|ref|YP_005255362.1| DNA polymerase III subunits gamma and tau [Sulfobacillus
acidophilus DSM 10332]
gi|339284242|gb|AEJ38353.1| DNA polymerase III gamma and tau subunits [Sulfobacillus
acidophilus TPY]
gi|361052173|gb|AEW03690.1| DNA polymerase III, subunits gamma and tau [Sulfobacillus
acidophilus DSM 10332]
Length = 528
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/343 (30%), Positives = 184/343 (53%), Gaps = 13/343 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
HQ L + Y PRTF ++ GQ L AV + +V Y+F GP GTGKTS ARI A+ L
Sbjct: 3 HQALYRVYRPRTFSEVAGQRRTVATLREAVRQGRVAHAYLFAGPRGTGKTSIARILAKTL 62
Query: 468 NCQS-LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYR 526
NC + E PC C SC + ++G ++ E+ N + I ++ + + S+Y+
Sbjct: 63 NCAAPTEAGDPCLTCTSCQAVEQGNHLDVIEIDAASNRGIDEIREIKERIYHQTAMSRYK 122
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+++ D+ L+P++++A+ K ++ P VVFIL ++ LP ++SRCQ++ F ++
Sbjct: 123 VYIVDEVHMLTPEAFNALLKTLEEPPSHVVFILATTEPQKLPVTVLSRCQRYEFQRLSLE 182
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVG 646
DI+ L + +E + + +AL++IA +DG+LRDA L+Q+ + + + E++G
Sbjct: 183 DIVDRLTRVVHEESVAFEPEALQMIADHADGALRDALSMLDQVIAMHGAVRLADSIEVLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDI----LAGSYD 702
+ E+L L+ AL + V+ L +++ G + ++ A + D+ LAG
Sbjct: 243 ALHPERLATLIG-ALGQSVDSVVRALAELVDAGADYTRILRDTARHLRDVMVYRLAGGAV 301
Query: 703 FTKDRHRRKFFRRQ----PLSKEEMEKLRQALKTLSEAEKQLR 741
F +RR++ R P + E + QA L+EAE +++
Sbjct: 302 FAP--YRREWLERVDRELPAAIPEAAWI-QAADVLAEAESRIK 341
>gi|380031696|ref|YP_004888687.1| DNA-directed DNA polymerase III subunit gamma/tau [Lactobacillus
plantarum WCFS1]
gi|342240939|emb|CCC78173.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
plantarum WCFS1]
Length = 565
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 191/361 (52%), Gaps = 15/361 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L + + P+ F ++VGQ ++ Q L NA+M + Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YRALYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAI 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC L +PC C +C + +G+ ++ E+ N E I D+ D + + Y++
Sbjct: 62 NCHHLVDGEPCNECETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV-- 645
+ +I +++ + D+ AL++IA+ ++G +RDA L+Q+ G +V L L+
Sbjct: 182 SYDRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDN-TVTLDDALMVT 240
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-------- 697
G ++ + L + + DT ++ +R I++ G + + L + D+L
Sbjct: 241 GSVTKQLLANYVSEVTDHDTKPALETMRQILQEGKDANRFIEDLISYTRDVLLYQQAPEM 300
Query: 698 AGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
S +D + + F +Q + E L Q +KTL++ ++Q+R + +L ++L
Sbjct: 301 VDSVAMGEDDQQFEAFAKQI----DAEVLYQMVKTLNDIQQQMRFTTHPDVYLEVLTVKL 356
Query: 758 A 758
A
Sbjct: 357 A 357
>gi|328956610|ref|YP_004373996.1| DNA polymerase III subunits gamma and tau [Carnobacterium sp. 17-4]
gi|328672934|gb|AEB28980.1| DNA polymerase III subunits gamma and tau [Carnobacterium sp. 17-4]
Length = 605
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/359 (30%), Positives = 189/359 (52%), Gaps = 15/359 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F+D+ GQ + Q L NA+ + K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRPQRFQDIAGQKAITQTLRNALAQEKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C C S +G+ ++ E+ N E I D+ D + ++Y++
Sbjct: 63 NCPNLKDGEPCNECEMCQSITQGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTSAEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ +++A+ K ++ P+ V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLTTGAFNALLKTLEEPPKNVIFILATTEPHKIPLTIISRTQRFDFKRISVRD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ +I +E IE ++AL +IA ++G +RDA L+Q +S ++V + G
Sbjct: 183 SCERMAYILGQEKIEYQEEALTVIARAAEGGMRDALSILDQAISYGDDSVTVENAMSVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETG------VEPLALMS------QLATVIT 694
++ E ++D D + +T + L+ I+ G VE L L S Q A +T
Sbjct: 243 SLTQELVLDYFDSIIQHNTEKGLSLLQSILAEGKDASRFVEDLILFSRDLLVYQQAPQMT 302
Query: 695 DILAGSYDFTKDRHRRKFFRRQPLSK--EEMEKLRQALKTLSEAEKQLRMSNDKLTWLT 751
D+L G+ + + Q L K E + +Q ++ + AE L ++ KLT LT
Sbjct: 303 DLLEGANVDEGFKSLSQTITAQQLYKVIELLNDTQQEIRFTNHAEVYLEVATVKLTQLT 361
>gi|418274335|ref|ZP_12889833.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
plantarum subsp. plantarum NC8]
gi|376009901|gb|EHS83227.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
plantarum subsp. plantarum NC8]
Length = 565
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 191/361 (52%), Gaps = 15/361 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L + + P+ F ++VGQ ++ Q L NA+M + Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YRALYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAI 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC L +PC C +C + +G+ ++ E+ N E I D+ D + + Y++
Sbjct: 62 NCHHLVDGEPCNECETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV-- 645
+ +I +++ + D+ AL++IA+ ++G +RDA L+Q+ G +V L L+
Sbjct: 182 SYDRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDN-TVTLDDALMVT 240
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-------- 697
G ++ + L + + DT ++ +R I++ G + + L + D+L
Sbjct: 241 GSVTKQLLANYVSEVTDHDTKPALETMRQILQEGKDANRFIEDLISYTRDVLLYQQAPEM 300
Query: 698 AGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
S +D + + F +Q + E L Q +KTL++ ++Q+R + +L ++L
Sbjct: 301 VDSVAMGEDDQQFEAFAKQI----DAEVLYQMVKTLNDIQQQMRFTTHPDVYLEVLTVKL 356
Query: 758 A 758
A
Sbjct: 357 A 357
>gi|373463828|ref|ZP_09555410.1| DNA polymerase III, subunit gamma and tau [Lactobacillus kisonensis
F0435]
gi|371763842|gb|EHO52295.1| DNA polymerase III, subunit gamma and tau [Lactobacillus kisonensis
F0435]
Length = 589
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/318 (29%), Positives = 172/318 (54%), Gaps = 15/318 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F ++VGQ+++ + L NA++ +++ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRPQRFDEIVGQSIITRTLKNALITKQISHAYLFTGPRGTGKTSAAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC L+ +PC C +C + + G ++ E+ N E I D+ D + + Y++
Sbjct: 63 NCHYLKDGEPCNQCETCKAINEGSLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR QKF F ++K D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPTNVIFILATTEPHKIPATIISRTQKFDFKRIKPKD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + +I ++ + D ALKLIA ++G +RDA L+Q +S +I+ + G
Sbjct: 183 ILERMAYILKQKDVSYDDRALKLIAKAAEGGMRDALSILDQAMSYGDNQITYENALLVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+++E L ++ DT + + ++ I++ G + + L + DIL
Sbjct: 243 SVTNELLTTYMEQVHQKDTKSALMTVQKILDGGKDASRFIEDLTSYCQDIL--------- 293
Query: 707 RHRRKFFRRQPLSKEEME 724
+++ P E+ME
Sbjct: 294 -----LYQQDPQMVEQME 306
>gi|77408841|ref|ZP_00785568.1| DNA polymerase III, gamma and tau subunits [Streptococcus
agalactiae COH1]
gi|421146837|ref|ZP_15606540.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
GB00112]
gi|77172527|gb|EAO75669.1| DNA polymerase III, gamma and tau subunits [Streptococcus
agalactiae COH1]
gi|401686544|gb|EJS82521.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
GB00112]
Length = 554
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 158/286 (55%), Gaps = 6/286 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVSSKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVNGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKLLA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L I KE I D DAL L+A R++G +RDA L+Q LSL IS+ + +E+
Sbjct: 182 IRDHLAQILDKEAISYDLDALTLVARRAEGGMRDALSILDQALSLAKDNHISLDVAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT 691
G IS + D + L+ DT + L VI ++G MS+ AT
Sbjct: 242 GSISLSAIDDYVSNILAHDTTEALAKLEVIFDSGKS----MSRFAT 283
>gi|269837957|ref|YP_003320185.1| DNA polymerase III subunits gamma and tau [Sphaerobacter
thermophilus DSM 20745]
gi|269787220|gb|ACZ39363.1| DNA polymerase III, subunits gamma and tau [Sphaerobacter
thermophilus DSM 20745]
Length = 589
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 172/303 (56%), Gaps = 13/303 (4%)
Query: 406 GRHQNLTQKYMPRTFR--DLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIF 463
+ Q+L +KY PR+F + VGQ +A+ L NA++ +V Y+F GP GTGKTS AR+
Sbjct: 13 AQSQSLYRKYRPRSFAPGEFVGQEHIARTLRNAIVLDRVAHAYLFCGPRGTGKTSTARLL 72
Query: 464 ARALNCQSLE-QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP 522
A+A+NC + + + +PC C +C + + G + +I E+ N + I DL + + + P
Sbjct: 73 AKAVNCLAPDPEARPCNACEACEAINAGTAVDIIEIDAASNRGVDDIRDLREKVKYA--P 130
Query: 523 SQYRI--FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFF 580
+Q R+ ++ D+ L+ D+++A K ++ P V F+L ++ D LP I SRCQ+F F
Sbjct: 131 TQLRVKFYIIDEAHQLTRDAFNAFLKTLEEPPGHVKFVLATTEPDKLPDTIASRCQRFDF 190
Query: 581 PKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR----- 635
+ +D++ L+ + +EG+E + +AL+LIA ++ GS+RDA LEQL+L G+
Sbjct: 191 RRFALSDVVEHLRAVCEREGMEAEDEALRLIARQATGSMRDALGLLEQLALFGETVDGKL 250
Query: 636 -ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVIT 694
I+ V+ + G+ ++LV L+D D ++ + E+G + L QL +
Sbjct: 251 VITADAVRRVTGMSRSDRLVALVDALAKKDAGAGLRVIAEATESGEDIHQLNRQLVAYLR 310
Query: 695 DIL 697
+L
Sbjct: 311 TLL 313
>gi|239618378|ref|YP_002941700.1| DNA polymerase III, subunits gamma and tau [Kosmotoga olearia TBF
19.5.1]
gi|239507209|gb|ACR80696.1| DNA polymerase III, subunits gamma and tau [Kosmotoga olearia TBF
19.5.1]
Length = 503
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/391 (29%), Positives = 197/391 (50%), Gaps = 32/391 (8%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+ F ++VGQ+ V L A+ + + Y+F+GP GTGKT+ ARI A+ALNC
Sbjct: 8 LYRKYRPKKFEEIVGQDQVKIVLKKAIENQSIAHAYIFFGPRGTGKTTTARILAKALNCL 67
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP-SQYRIFV 529
S KPCG C SCI+ D ++ E+ + I + D + RP Y++++
Sbjct: 68 S-HDDKPCGKCESCIAVDNNSHMDVIEIDAASYRGIDEIRKIRD-AASYRPTMGHYKVYI 125
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ L+ ++++A+ K ++ P +VFIL +++L+ +P I+SRCQ F F + + I+
Sbjct: 126 VDEFHMLTREAFNALLKTLEEPPEHIVFILATTNLEKVPETILSRCQVFTFKPLSEGQIV 185
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLIS 649
LQ I +E +ALK+IA + G +RDA LE+ + G++I V+ ++G++
Sbjct: 186 EYLQRILKEEKKTYTVEALKIIAKAAKGGMRDAVNLLERALVFGEKIEEDNVKNILGILP 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR 709
+E L L L+ D+ + + +E L ++ S + TKD
Sbjct: 246 EEYLKSYLVAILNGDSDEIIA-----LSENIERLGYSHD------SVIRQSIELTKDMIS 294
Query: 710 RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMS-NDKLTWLTAALLQLAPDQQYVLPSS 768
R+ + E E+ + ++ L E +++R S N KLT+ +L LA +PS
Sbjct: 295 RR--------ELEFERGVKLIEKLWEVNREMRYSENKKLTFEVLSLTTLAAMN---VPSV 343
Query: 769 SADTSFSHSPLDLENAGGRGMTRKGGERAEI 799
S + P NA + +K E E+
Sbjct: 344 SVE------PAKAVNAVVKEEVKKSNEEKEV 368
>gi|450010815|ref|ZP_21828823.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
A19]
gi|450023928|ref|ZP_21830945.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
U138]
gi|449190014|gb|EMB91627.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
A19]
gi|449192735|gb|EMB94143.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
U138]
Length = 558
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQV 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|301058434|ref|ZP_07199455.1| DNA polymerase III, subunit gamma and tau [delta proteobacterium
NaphS2]
gi|300447490|gb|EFK11234.1| DNA polymerase III, subunit gamma and tau [delta proteobacterium
NaphS2]
Length = 564
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 185/366 (50%), Gaps = 13/366 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L +K+ P+ F D++GQ + Q L NA+ ++ Y+F GP G GKTS ARIFA+A+
Sbjct: 3 YEVLARKWRPQVFEDVIGQEHITQTLVNAIKTGRLAHAYIFGGPRGVGKTSVARIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC E PC C SC G S +++E+ N + I +L ++ S+YRI
Sbjct: 63 NCAEGEPGIPCNRCRSCREITEGNSVDVQEIDGASNRGIDEIRELRESARYMPSASRYRI 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
+V D+ L+ +++A+ K ++ P V FI ++ +P I+SRCQ+F F ++
Sbjct: 123 YVIDEVHMLTLPAFNALLKTLEEPPPHVKFIFATTESHKVPITILSRCQRFDFKRIALQK 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L+ I+ EG+ I AL +IA ++GS+RDAE L+Q +S G ++S V E++G
Sbjct: 183 IVAYLEKISGHEGVAIGTTALAMIAREAEGSMRDAESLLDQVVSFAGDKVSDDQVPEILG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVE----PLALMSQLATVITDILAGSYD 702
+I + + + + + + G + ALM+Q ++ ++A +
Sbjct: 243 IIDRGLIFESSSAIIEGAAPRCLAVVEKVYSRGYDIKEFYRALMAQFRNLLVSLIAPEEN 302
Query: 703 FTK-DRHRRKFFRRQPLSKEEM---EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
RK RRQ EM EKL+ L L E LR S L A L++L
Sbjct: 303 LIDMSESDRKEIRRQA----EMAGTEKLQVVLNFLISREDALRFSTYPRLVLEATLIKLC 358
Query: 759 PDQQYV 764
+Y+
Sbjct: 359 TLGEYL 364
>gi|449935795|ref|ZP_21803610.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
2ST1]
gi|450154471|ref|ZP_21877759.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans 21]
gi|449166145|gb|EMB69100.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
2ST1]
gi|449237843|gb|EMC36647.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans 21]
Length = 558
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQV 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|424824455|ref|ZP_18249468.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes str.
Scott A]
gi|332313135|gb|EGJ26230.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes str.
Scott A]
Length = 556
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/355 (28%), Positives = 178/355 (50%), Gaps = 33/355 (9%)
Query: 429 VAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488
+ + L NA+++ K Y+F GP GTGKTS A+IFA+A+NC+ +PC C C
Sbjct: 1 MTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHDGEPCNECEICKGTT 60
Query: 489 RGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVV 548
G ++ E+ N E I D+ + + + ++Y++++ D+ LS +++A+ K +
Sbjct: 61 DGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTL 120
Query: 549 DRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDAL 608
+ P+ V+FIL ++ LP IISR Q+F F ++ DII L++I +E I D+ AL
Sbjct: 121 EEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDIIGRLKFILEEEKIPYDEKAL 180
Query: 609 KLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVGLISDEKLVDLLDLALSADTVN 667
++A ++G +RDA L+Q+ G + ++V E+ G ++ L L+ A D
Sbjct: 181 MIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSVAQNLLTKLVSAAFDGDAAE 240
Query: 668 TVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEME--- 724
+ L ++ G +P+ L+ L D+L +++ P +E +E
Sbjct: 241 AISTLTALLAEGKDPVRLVEDLLVFFRDVL--------------LYQKAPNLEETLERAL 286
Query: 725 ---------------KLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYV 764
K+ + +K L+ A++Q+R SN ++ AL+QL Q V
Sbjct: 287 IDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQASQSV 341
>gi|299141517|ref|ZP_07034653.1| DNA polymerase III, gamma/tau subunit [Prevotella oris C735]
gi|298576853|gb|EFI48723.1| DNA polymerase III, gamma/tau subunit [Prevotella oris C735]
Length = 599
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/356 (31%), Positives = 186/356 (52%), Gaps = 16/356 (4%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL- 472
KY P TF +VGQ+ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC+
Sbjct: 10 KYRPMTFDAVVGQHALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEHPG 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVF 530
E + C C SC + + +S NI E+ N E+I L++ T PP +Y++F+
Sbjct: 70 EDGEACNACESCKAFNEQRSYNIFELDAASNNSVENIKALMEQ--TRIPPQVGRYKVFII 127
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M + I
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVGNTIE 187
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+ +A+KE I D++AL +IA ++DG +RDA +Q + Q I+ V E + ++
Sbjct: 188 HLKLVAAKESITYDEEALAVIAEKADGGMRDALSIFDQAASFCQGNITYQKVIEDLNVLD 247
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDF------ 703
+ ++D AL+ + L I+ G + L+ LA + ++L D
Sbjct: 248 SDNYFKIIDYALANKVSEIMVLLNGILNKGFDGGNLIGGLAAHVRNVLMAR-DVQTLPLL 306
Query: 704 -TKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
T + R K+ + K + L QALK L++ + + S++K + L+Q+A
Sbjct: 307 ETSQQQREKYHEQS--KKCPVNFLYQALKLLNQCDINYKQSSNKRLLVEITLIQVA 360
>gi|397650185|ref|YP_006490712.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
GS-5]
gi|449984526|ref|ZP_21819101.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NFSM2]
gi|449994656|ref|ZP_21822649.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans A9]
gi|392603754|gb|AFM81918.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
GS-5]
gi|449180105|gb|EMB82281.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NFSM2]
gi|449185162|gb|EMB87064.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans A9]
Length = 558
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|270292578|ref|ZP_06198789.1| DNA polymerase III [Streptococcus sp. M143]
gi|270278557|gb|EFA24403.1| DNA polymerase III [Streptococcus sp. M143]
Length = 552
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/337 (30%), Positives = 177/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVDGEPCNHCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + +L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALDSLNLLFENGKSMTRFVTDLLQYLRDLLVVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F LS+E + E + A +L++ + L+
Sbjct: 302 THHSSVFMDNLALSQESLFEMIHLATVSLADMKASLQ 338
>gi|315613323|ref|ZP_07888232.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
ATCC 49296]
gi|315314558|gb|EFU62601.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
ATCC 49296]
Length = 552
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/337 (30%), Positives = 178/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 ITAHIHHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNALTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + + + +L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALAQQEVPKALDSLNLLFENGKSMTRFVTDLLQYLRDLLVVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F LS+E + E +R A +L++ + L+
Sbjct: 302 THHSPVFMDNLALSQESLFEMIRIATVSLADMKASLQ 338
>gi|449916509|ref|ZP_21796882.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
15JP3]
gi|449941820|ref|ZP_21805684.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
11A1]
gi|449953369|ref|ZP_21808996.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
4VF1]
gi|450137448|ref|ZP_21871657.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NLML1]
gi|449151598|gb|EMB55326.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
11A1]
gi|449155107|gb|EMB58637.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
15JP3]
gi|449172082|gb|EMB74723.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
4VF1]
gi|449235229|gb|EMC34197.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NLML1]
Length = 558
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|281425324|ref|ZP_06256237.1| hypothetical protein HMPREF0971_02296 [Prevotella oris F0302]
gi|281400617|gb|EFB31448.1| DNA polymerase III, gamma and tau subunits [Prevotella oris F0302]
Length = 599
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/357 (31%), Positives = 187/357 (52%), Gaps = 16/357 (4%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P TF +VGQ+ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC+
Sbjct: 9 RKYRPMTFDAVVGQHALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEHP 68
Query: 473 -EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFV 529
E + C C SC + + +S NI E+ N E+I L++ T PP +Y++F+
Sbjct: 69 GEDGEACNACESCKAFNEQRSYNIFELDAASNNSVENIKALMEQ--TRIPPQVGRYKVFI 126
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M + I
Sbjct: 127 IDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVGNTI 186
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLI 648
L+ +A+KE I D++AL +IA ++DG +RDA +Q + Q I+ V E + ++
Sbjct: 187 EHLKLVAAKESITYDEEALAVIAEKADGGMRDALSIFDQAASFCQGNITYQKVIEDLNVL 246
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDF----- 703
+ ++D AL+ + L I+ G + L+ LA + ++L D
Sbjct: 247 DSDNYFKIIDYALANKVSEIMVLLNGILNKGFDGGNLIGGLAAHVRNVLMAR-DVQTLPL 305
Query: 704 --TKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
T + R K+ + K + L QALK L++ + + S++K + L+Q+A
Sbjct: 306 LETSQQQREKYHEQS--KKCPVNFLYQALKLLNQCDINYKQSSNKRLLVEITLIQVA 360
>gi|449910063|ref|ZP_21794526.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
OMZ175]
gi|449260475|gb|EMC57975.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
OMZ175]
Length = 558
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|436735979|ref|YP_007318107.1| DNA polymerase III, subunits gamma and tau [Gloeocapsa sp. PCC
7428]
gi|428267580|gb|AFZ33524.1| DNA polymerase III, subunits gamma and tau [Gloeocapsa sp. PCC
7428]
Length = 466
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 189/375 (50%), Gaps = 15/375 (4%)
Query: 415 YMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQ 474
Y P+T DLVGQ V L+NA+ R++ Y+F GP GTGKTS ARIFA++LNC ++
Sbjct: 9 YRPKTLEDLVGQPYVKATLANAITNRQIAPAYLFTGPRGTGKTSTARIFAKSLNCLESKK 68
Query: 475 P--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
P PCG C SC S + S ++ E+ + + +L++ + +YRIF+ D+
Sbjct: 69 PTINPCGQCQSCRSIESSSSLDVSEIDAASHNGVDDARELVERSSFAPVAGRYRIFILDE 128
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
C L+ S +A+ K ++ P VVF+L ++ + + IISR Q+F F + I L
Sbjct: 129 CHQLTTQSQNALLKCIEEPPAHVVFVLCTTEVHKVLPTIISRTQRFEFRALSIGTITTQL 188
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEK 652
+ +A E I I DAL IA +G LRDA L Q+ LLG+ ++ V E+ G ++ +
Sbjct: 189 RKVAVSEEIAIGDDALLAIARIVNGGLRDALQLLSQVRLLGEGVTANQVIEMAGGTTESE 248
Query: 653 LVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA--------GSYDFT 704
L+ +++ + +T+ ++ R +++ G P +++ L D+L
Sbjct: 249 LLAIVEAIAAGNTLQLLQAARELVDAGKTPTLILNSLLQTSRDLLVLQSAPKEQSLLTGV 308
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL-APDQQY 763
H+ K +K + L L L +AE QLR S + WL LL L + QQ
Sbjct: 309 VSYHQLKSLA----AKWSFDTLNLVLVQLHKAELQLRQSINAGVWLEVCLLNLMSATQQE 364
Query: 764 VLPSSSADTSFSHSP 778
P + T+ + P
Sbjct: 365 PQPIFTKLTTTTAEP 379
>gi|22536992|ref|NP_687843.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
2603V/R]
gi|25010901|ref|NP_735296.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
NEM316]
gi|76787118|ref|YP_329574.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
A909]
gi|76798944|ref|ZP_00781147.1| DNA polymerase III subunits gamma [Streptococcus agalactiae 18RS21]
gi|77405538|ref|ZP_00782629.1| DNA polymerase III, gamma and tau subunits [Streptococcus
agalactiae H36B]
gi|77410726|ref|ZP_00787085.1| DNA polymerase III, gamma and tau subunits [Streptococcus
agalactiae CJB111]
gi|77413110|ref|ZP_00789310.1| DNA polymerase III, gamma and tau subunits [Streptococcus
agalactiae 515]
gi|406709317|ref|YP_006764043.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
GD201008-001]
gi|424049609|ref|ZP_17787160.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
ZQ0910]
gi|22533847|gb|AAM99715.1|AE014229_16 DNA polymerase III, gamma and tau subunits [Streptococcus
agalactiae 2603V/R]
gi|23095280|emb|CAD46490.1| Unknown [Streptococcus agalactiae NEM316]
gi|76562175|gb|ABA44759.1| DNA polymerase III, gamma and tau subunits [Streptococcus
agalactiae A909]
gi|76585711|gb|EAO62266.1| DNA polymerase III subunits gamma [Streptococcus agalactiae 18RS21]
gi|77160811|gb|EAO71922.1| DNA polymerase III, gamma and tau subunits [Streptococcus
agalactiae 515]
gi|77163262|gb|EAO74214.1| DNA polymerase III, gamma and tau subunits [Streptococcus
agalactiae CJB111]
gi|77175845|gb|EAO78623.1| DNA polymerase III, gamma and tau subunits [Streptococcus
agalactiae H36B]
gi|389648882|gb|EIM70371.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
ZQ0910]
gi|406650202|gb|AFS45603.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
GD201008-001]
Length = 554
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 158/286 (55%), Gaps = 6/286 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVSSKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQINGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKLLA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L I KE I D DAL L+A R++G +RDA L+Q LSL IS+ + +E+
Sbjct: 182 IRDHLAQILDKEAISYDLDALTLVARRAEGGMRDALSILDQALSLAKDNHISLDVAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT 691
G IS + D + L+ DT + L VI ++G MS+ AT
Sbjct: 242 GSISLSAIDDYVSNILAHDTTEALAKLEVIFDSGKS----MSRFAT 283
>gi|392947858|ref|ZP_10313481.1| DNA polymerase III subunits gamma and tau [Lactobacillus pentosus
KCA1]
gi|392436923|gb|EIW14824.1| DNA polymerase III subunits gamma and tau [Lactobacillus pentosus
KCA1]
Length = 567
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/361 (27%), Positives = 192/361 (53%), Gaps = 15/361 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L + + P+ F ++VGQ ++ Q L NA+M + Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YRALYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAI 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC L +PC C +C + +G+ ++ E+ N E I D+ D + + Y++
Sbjct: 62 NCHHLVDGEPCNECETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV-- 645
+ +I +++G+ D+ AL++IA+ ++G +RDA L+Q+ G +V L L+
Sbjct: 182 SYDRMVYILNEKGVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDN-TVTLDDALMVT 240
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-------- 697
G ++ + L + + +T ++ +R I++ G + + L + D+L
Sbjct: 241 GSVTKQLLANYVTQVTHHETKPALETMREILQEGKDANRFIEDLISYTRDVLLYQQAPEM 300
Query: 698 AGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
S +D + + F ++ + E L Q +KTL++ ++Q+R + +L ++L
Sbjct: 301 VDSVAMGEDDQQFEAFAKEI----DAEVLYQMVKTLNDIQQQMRFTTHPDVYLEVLTVKL 356
Query: 758 A 758
A
Sbjct: 357 A 357
>gi|450071148|ref|ZP_21848003.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
M2A]
gi|449212773|gb|EMC13125.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
M2A]
Length = 558
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|335427716|ref|ZP_08554638.1| DNA polymerase III subunits gamma and tau [Haloplasma contractile
SSD-17B]
gi|335429156|ref|ZP_08556058.1| DNA polymerase III subunits gamma and tau [Haloplasma contractile
SSD-17B]
gi|334890236|gb|EGM28508.1| DNA polymerase III subunits gamma and tau [Haloplasma contractile
SSD-17B]
gi|334894186|gb|EGM32390.1| DNA polymerase III subunits gamma and tau [Haloplasma contractile
SSD-17B]
Length = 666
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 161/291 (55%), Gaps = 1/291 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L + Y P+TF+D+VGQ + + NA+ + K+ Y+F GP GTGKT+ A+I A+A+
Sbjct: 3 YKALYRVYRPQTFKDVVGQAHITRTFKNALEKNKIAHAYLFTGPRGTGKTTVAKIIAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C S + G ++ E+ N + I ++ D + S ++++
Sbjct: 63 NCEQSPISEPCNNCENCKSINSGFDSDVFEIDAASNNGVDEIREIRDKVKYSPTHGRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F +
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKIPATIISRCQRFDFRSISIQH 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L+ + +KE I +D+ A+ IA + G +RDA L+Q +S + +S V E+ G
Sbjct: 183 IVSRLREVVAKEDIRVDEQAIITIAKNAKGGMRDALSLLDQAISFSDEYVSEENVHEITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+S+EKL L + T +++ + ++ G E L+ L D+L
Sbjct: 243 TVSEEKLYQLASAMTDSKTAESIEIVDELLSLGKEVTRLIEDLIYYYRDLL 293
>gi|229917436|ref|YP_002886082.1| DNA polymerase III subunits gamma and tau [Exiguobacterium sp.
AT1b]
gi|229468865|gb|ACQ70637.1| DNA polymerase III, subunits gamma and tau [Exiguobacterium sp.
AT1b]
Length = 558
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/361 (28%), Positives = 197/361 (54%), Gaps = 15/361 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + Y P++F+++VGQ + + + NA++ ++ Y+F GP GTGKTS A+I A+A+
Sbjct: 3 YQALYRVYRPQSFQEVVGQVHITRTIQNALLEERMSHAYLFSGPRGTGKTSLAKIIAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ--Y 525
NC+S +PC C +CI+ G S ++ E+ N + I ++ D + PPSQ Y
Sbjct: 63 NCESAPTREPCNTCPTCIAITEGTSPDVFEIDAASNNGVDEIREIRDKV--KYPPSQGRY 120
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ LS +++A+ K ++ P +FIL ++ +P IISRCQ+F + +
Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPAHAIFILATTEPHKIPATIISRCQRFDVKRHEV 180
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQEL 644
+ + + +I + + + D +ALKLIA +DG +RDA L+Q L+ R++ V E+
Sbjct: 181 SQLQTRMAYILNDQDHDYDPEALKLIARAADGGMRDALSLLDQALAFSDGRLTEEAVLEV 240
Query: 645 VGLISDEKLVDLLDLALSADTVNTV-KNLRVIMETG------VEPLALMSQLATVITDIL 697
G ++DE L+D+ L +N + L +++ G +E L + + A ++
Sbjct: 241 TGAVTDETLLDMA-YGLQRKELNVILSTLELMLREGKDLKRFIEDLVFVHRDALLLKASP 299
Query: 698 AGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ + R +F RQ + ++L Q ++ L++ ++Q+R+SN + +++
Sbjct: 300 QAADLLERARPTDEF--RQFVEATSTDELFQVIEELNDCQQQMRLSNHPKVLVELTFIRI 357
Query: 758 A 758
A
Sbjct: 358 A 358
>gi|449902432|ref|ZP_21791581.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
M230]
gi|450046282|ref|ZP_21838839.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
N34]
gi|450127760|ref|ZP_21868736.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
U2A]
gi|450144614|ref|ZP_21874135.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
1ID3]
gi|450170156|ref|ZP_21883394.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SM4]
gi|450175162|ref|ZP_21884990.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SM1]
gi|449150457|gb|EMB54222.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
1ID3]
gi|449199058|gb|EMC00142.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
N34]
gi|449230380|gb|EMC29642.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
U2A]
gi|449246250|gb|EMC44561.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SM4]
gi|449247235|gb|EMC45520.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SM1]
gi|449262830|gb|EMC60271.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
M230]
Length = 558
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|406991860|gb|EKE11309.1| hypothetical protein ACD_15C00108G0004 [uncultured bacterium]
Length = 550
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 158/274 (57%), Gaps = 5/274 (1%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+ F +++GQ + Q LSNA+ +V Y+F G GTGKTS ARI A+ +NC
Sbjct: 5 LYRKYRPKNFSEIIGQKHIVQTLSNAIKNNRVAHAYLFTGSRGTGKTSIARILAKTINCT 64
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ--YRIF 528
+ C C++C + +S +I E+ N ++I +L + + + PP+Q ++++
Sbjct: 65 DQKNSISCEKCSNCKVINDARSLDIIEIDAASNTGVDNIRELKETI--NLPPTQLKHKVY 122
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ LS +++A+ K ++ P VVFIL ++ + +P I+SRCQKF F K+ +I
Sbjct: 123 IIDEVHMLSTGAFNALLKTLEEPPAHVVFILATTEIHKVPATIVSRCQKFDFAKLPLENI 182
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGL 647
I L IA KE I ID ++L++IA ++G +RDAE L Q +SL + I++ V+E++G
Sbjct: 183 IEKLSGIAKKEKITIDAESLEMIAIAAEGGMRDAESLLGQVISLEDKNITIKEVEEILGT 242
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVE 681
+ ++ DL + D + + I+ G +
Sbjct: 243 TDRKFSAEIADLIIKKDVTKAISRINNIVTDGYD 276
>gi|410594385|ref|YP_006951112.1| DNA polymerase III subunit gamma/tau [Streptococcus agalactiae
SA20-06]
gi|421532006|ref|ZP_15978379.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
STIR-CD-17]
gi|403642729|gb|EJZ03546.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
STIR-CD-17]
gi|410518024|gb|AFV72168.1| DNA polymerase III subunit gamma/tau [Streptococcus agalactiae
SA20-06]
Length = 554
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 153/274 (55%), Gaps = 2/274 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++V+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQSVVSTTLKQAVSSKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVNGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKLLA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L I KE I D DAL L+A R++G +RDA L+Q LSL IS+ + +E+
Sbjct: 182 IRDHLAQILDKEAISYDLDALTLVARRAEGGMRDALSILDQALSLAKDNHISLDVAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETG 679
G IS + D + L+ DT + L +I ++G
Sbjct: 242 GSISLSAIDDYVSNILAHDTTEALAKLEIIFDSG 275
>gi|417938282|ref|ZP_12581580.1| DNA polymerase III, subunit gamma and tau [Streptococcus infantis
SK970]
gi|343391372|gb|EGV03947.1| DNA polymerase III, subunit gamma and tau [Streptococcus infantis
SK970]
Length = 554
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 179/337 (53%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ+++A+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQDVIARTLKQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + +QY++
Sbjct: 62 NCPNQKGGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIRDIRDKSTYAPSIAQYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTPNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRI-SVPLVQELV 645
I + I KEGI+ + +A+++IA R++G +RDA L+Q LSL + I + + +E+
Sbjct: 182 IRDHIFQILEKEGIDYETEAVEIIARRAEGGMRDALSILDQALSLTQETILTTAVSEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L + D ++ L +I E G + L + DIL
Sbjct: 242 GTISLSALDHYVAALAQKDVPGALEQLDLIFENGKSMTRFVVDLLQYLRDILIVQAGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F R LS++ + E + A K+L++ + L+
Sbjct: 302 THHSDVFERNLDLSQDILFEMISLATKSLADIKASLQ 338
>gi|450097556|ref|ZP_21857510.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SF1]
gi|449222520|gb|EMC22244.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SF1]
Length = 558
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|449951190|ref|ZP_21808571.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
11SSST2]
gi|449166547|gb|EMB69481.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
11SSST2]
Length = 558
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|387785725|ref|YP_006250821.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
LJ23]
gi|449877332|ref|ZP_21783228.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
S1B]
gi|449929231|ref|ZP_21801461.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
3SN1]
gi|450062908|ref|ZP_21844629.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NLML5]
gi|450083606|ref|ZP_21853022.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
N66]
gi|379132126|dbj|BAL68878.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
LJ23]
gi|449164698|gb|EMB67743.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
3SN1]
gi|449205175|gb|EMC05932.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NLML5]
gi|449213010|gb|EMC13357.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
N66]
gi|449251080|gb|EMC49111.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
S1B]
Length = 558
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|24379964|ref|NP_721919.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
UA159]
gi|449865360|ref|ZP_21778950.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
U2B]
gi|449871718|ref|ZP_21781219.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
8ID3]
gi|24377948|gb|AAN59225.1|AE014989_6 DNA polymerase III, gamma/tau subunit [Streptococcus mutans UA159]
gi|449155056|gb|EMB58588.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
8ID3]
gi|449264347|gb|EMC61692.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
U2B]
Length = 558
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|290580054|ref|YP_003484446.1| DNA polymerase III subunit gamma/tau [Streptococcus mutans NN2025]
gi|254996953|dbj|BAH87554.1| DNA polymerase III gamma/tau subunit [Streptococcus mutans NN2025]
Length = 558
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|223933163|ref|ZP_03625155.1| DNA polymerase III, subunits gamma and tau [Streptococcus suis
89/1591]
gi|223898224|gb|EEF64593.1| DNA polymerase III, subunits gamma and tau [Streptococcus suis
89/1591]
Length = 555
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 161/286 (56%), Gaps = 6/286 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA L A+ + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVGGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKVTD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSL-LGQRISVPLVQELV 645
I L I +KEG+ D+ AL +IA R++G +RDA L+Q LSL Q++++ + +E+
Sbjct: 182 IQEHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQALSLSQDQQVTLEIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT 691
G IS L D + D+V +++L+ + G MS+ AT
Sbjct: 242 GSISLRALDDYVASLRQGDSVTALQHLQTLFGQGKS----MSRFAT 283
>gi|406830133|ref|ZP_11089727.1| DNA polymerase III subunits gamma and tau [Schlesneria paludicola
DSM 18645]
Length = 592
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 180/342 (52%), Gaps = 8/342 (2%)
Query: 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466
++ L +++ P+TF ++VGQ VAQ L NA+ +V Y+F G G GKTS ARIFA+A
Sbjct: 4 QYTVLARRFRPQTFTEVVGQERVAQTLRNAIHDGRVAHAYLFTGARGVGKTSMARIFAKA 63
Query: 467 LNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYR 526
LNC PC C C G+ ++ E+ N + I L N+ S+++
Sbjct: 64 LNCPDAVDGVPCNVCEQCRGISVGQDVDVSEIDGASNRGIDDIRSLRANVNIKSMRSKFK 123
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
I++ D+ L+ ++++A+ K ++ P V FI ++ + +P I+SRCQ+F F +
Sbjct: 124 IYIIDEVHMLTKEAFNALLKTLEEPPPMVKFIFCTTESNKVPDTILSRCQRFDFGTISTD 183
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELV 645
+I L+ +A EG ++D+ AL+L+A R+ GS+RD++ +QL G ++IS V L+
Sbjct: 184 NITIRLRQLAEAEGFQVDEAALELVARRAAGSMRDSQSLFDQLLAFGSKQISSADVHRLL 243
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G D++L ++D + + + L M GV+ A QL D++ + + T
Sbjct: 244 GTAPDDRLTGMVDALIERRQGDALMRLDAAMREGVQLEAFTDQLVAYFRDLMVTACEATS 303
Query: 706 ------DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLR 741
R R+Q + ++ + A++ L+EA+ +++
Sbjct: 304 IPLLAVGSDCRDLLRQQA-QRWGLQTITTAMQILAEAKSRMQ 344
>gi|450091385|ref|ZP_21855451.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans W6]
gi|450150681|ref|ZP_21876716.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
14D]
gi|449219341|gb|EMC19310.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans W6]
gi|449233310|gb|EMC32387.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
14D]
Length = 558
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 164/316 (51%), Gaps = 2/316 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L + L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVSDLLAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQAGGEN 301
Query: 706 DRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 302 THHGEAFDKNLTLSQE 317
>gi|450164831|ref|ZP_21881553.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans B]
gi|449241371|gb|EMC40004.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans B]
Length = 558
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCSHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRAIYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQDLSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|282878261|ref|ZP_06287057.1| DNA polymerase III, subunit gamma and tau [Prevotella buccalis ATCC
35310]
gi|281299679|gb|EFA92052.1| DNA polymerase III, subunit gamma and tau [Prevotella buccalis ATCC
35310]
Length = 593
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 126/409 (30%), Positives = 206/409 (50%), Gaps = 17/409 (4%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC-QSL 472
KY P TF +VGQ+ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC
Sbjct: 10 KYRPMTFDAVVGQSALITTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCLNPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVF 530
+ C C SC + + +S NI E+ N E+I L+D T PP +Y++F+
Sbjct: 70 ADGEACNECESCQAFNEQRSYNIFELDAASNNSVENIKSLMDQ--TRIPPQVGKYKVFII 127
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A K ++ P V+FIL ++ + IISRCQ + F +M DII
Sbjct: 128 DEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTIISRCQIYDFERMATTDIIN 187
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+ +A +EGI + AL +IA ++DG +RDA +Q + Q I+ V E + ++
Sbjct: 188 HLKNVAQQEGITYEDAALNIIAEKADGGMRDALSVFDQAASFCQGNITYDKVLEDLNVLD 247
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYDFTK 705
+ ++DL+L + + L I+ G + L + LA+ I ++L A + +
Sbjct: 248 ADNYFKMVDLSLENKVSDVMVLLNSILAKGFDGGLLTNGLASHIRNVLMAKDAQTLPLLE 307
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVL 765
+++ +Q K + L QALK L+ + R S++K + L+++A V
Sbjct: 308 VSEQQRQKYQQQAQKCPTKFLYQALKILNRCDVNYRQSSNKRLLVELTLIEVA----QVT 363
Query: 766 PSSSADTSFSHSPLDLENAGGRGMTRKGGERAE-ISNKETG--VPMNVR 811
+ A SP L++ + GGE + +++ ET P N R
Sbjct: 364 QADDASDGAGRSPKRLKSLFKKLAPAMGGETNQRVASSETSKVSPANAR 412
>gi|450182003|ref|ZP_21888102.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans 24]
gi|449245445|gb|EMC43782.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans 24]
Length = 558
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTNA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|299542068|ref|ZP_07052384.1| DNA polymerase III subunit gamma/tau [Lysinibacillus fusiformis
ZC1]
gi|424740299|ref|ZP_18168702.1| DNA polymerase III subunit gamma/tau [Lysinibacillus fusiformis
ZB2]
gi|298725383|gb|EFI66031.1| DNA polymerase III subunit gamma/tau [Lysinibacillus fusiformis
ZC1]
gi|422946201|gb|EKU40619.1| DNA polymerase III subunit gamma/tau [Lysinibacillus fusiformis
ZB2]
Length = 595
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 156/291 (53%), Gaps = 1/291 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q + Y P++FR++ GQ V + L NA++ K Y+F GP GTGKTS A+IFA+AL
Sbjct: 3 YQAFYRVYRPQSFREMSGQTHVKRTLQNALLANKTTHAYLFSGPRGTGKTSTAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +CIS G ++ E N E I D+++ + + S+Y++
Sbjct: 63 NCEHAPSKEPCNECATCISITDGSHPDVIEFDAASNSRVEEIRDIIEKVRFAPASSRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VFIL ++ LP IISRCQ+F F ++ D
Sbjct: 123 YIIDEVHMLSTSAFNALLKTLEEPPPHAVFILATTEPHKLPATIISRCQRFDFKRLSTND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
II ++ + + ++ LK+IA + G +RDA L+Q +S G+++ + + G
Sbjct: 183 IIERMKVVLEDIDLPYEEQGLKVIAQSAAGGMRDALSLLDQVVSFSGEKLKLEDTLLVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
IS + DL + D + L ++ G +PL L L T D+L
Sbjct: 243 SISQDIFYDLAEALKVKDVAQMLALLEQLIADGKDPLRLSEDLITFFRDLL 293
>gi|193213861|ref|YP_001995060.1| DNA polymerase III subunits gamma and tau [Chloroherpeton
thalassium ATCC 35110]
gi|193087338|gb|ACF12613.1| DNA polymerase III, subunits gamma and tau [Chloroherpeton
thalassium ATCC 35110]
Length = 403
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/369 (29%), Positives = 179/369 (48%), Gaps = 27/369 (7%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
+ +KY P+ F D+ Q V + L NA+ ++ Y+F G G GKT+ ARI A+ LNC+
Sbjct: 6 IARKYRPQKFSDITAQEHVTRTLRNAIRTGRIAHGYIFSGSRGVGKTTAARILAKGLNCE 65
Query: 471 SLEQ--------PKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP 522
+ + +PCG C SC D G S NI E N + I L +N+ +
Sbjct: 66 KILKDEAYRETVSEPCGECESCRDFDAGSSLNISEFDAASNNSVDDIRALRENVRYAPQK 125
Query: 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPK 582
+Y++++ D+ LS +++A K ++ P VFI ++ L+ +P I SRCQKF F +
Sbjct: 126 GRYKVYIIDEFHMLSNAAFNAFLKTLEEPPSHAVFIFATTELNKVPPTIASRCQKFNFKR 185
Query: 583 MKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-----LSLLGQRIS 637
+ DI L I + E I ID D+L LIA ++DG++RDA+ L+Q LS ++I
Sbjct: 186 ISVLDIQERLAEICAAEAINIDVDSLTLIARKADGAMRDAQSLLDQVISFFLSTENEKIE 245
Query: 638 VPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
V L+G I DE + D + ++ R I + G + L +++L + L
Sbjct: 246 YTNVAALLGDIDDEHFFAVTDSIKEKNHAKVLELSRYIFDNGFDTLDFLARLVEHFRNFL 305
Query: 698 AGSYDFTKDRHRRKFFRRQPLSKEEM---------EKLRQALKTLSEAEKQLRMSNDKLT 748
K+ K R +K+ E+L + + +++AEK +R +
Sbjct: 306 -----LVKNLRSSKLIERTEAAKKRYEAEADTFSAEELMRFIDVVNQAEKDIRFFREPQL 360
Query: 749 WLTAALLQL 757
ALL+L
Sbjct: 361 RFELALLKL 369
>gi|300865074|ref|ZP_07109900.1| putative DNA polymerase III, subunits gamma and tau [Oscillatoria
sp. PCC 6506]
gi|300336938|emb|CBN55050.1| putative DNA polymerase III, subunits gamma and tau [Oscillatoria
sp. PCC 6506]
Length = 463
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 162/292 (55%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L QKY P T +L GQ + + LSNAV K+ Y+F G GTGKTS ARI A++L
Sbjct: 2 YAALPQKYRPHTLSELAGQEYIQRTLSNAVKTNKIAPAYLFAGERGTGKTSTARILAKSL 61
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC + ++P KPCG C SC S ++G S ++ E+ + + L++ + S+Y
Sbjct: 62 NCTNTDKPTVKPCGNCQSCRSIEKGNSLDVSEIDAASHNGVDDARGLIERSHFAPAISRY 121
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
R+F+ D+C LS +++A+ K ++ P VVFIL ++ + I SRCQ F F +
Sbjct: 122 RVFILDECHCLSSQAFNALLKCLEEPPHHVVFILCTTEQHKVLPTINSRCQTFLFRSLPI 181
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
I+ L IA KE I I + A IA ++G +RDA L+QLSLLG+ I+ V EL
Sbjct: 182 LSIVQQLTTIAQKESIAITEAAKIAIARAANGGMRDALQLLDQLSLLGEEITSDRVLELS 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G I + LV +L A + D + ++ R ++++G P L+ L D+L
Sbjct: 242 GRIPESDLVAILQSAGTGDALKLLQLSRELIDSGKNPKMLLGSLLACYRDLL 293
>gi|94988789|ref|YP_596890.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
MGAS9429]
gi|417856649|ref|ZP_12501708.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
HKU QMH11M0907901]
gi|94542297|gb|ABF32346.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes
MGAS9429]
gi|387933604|gb|EIK41717.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
HKU QMH11M0907901]
Length = 561
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/362 (29%), Positives = 182/362 (50%), Gaps = 5/362 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L W+ KEG+ + DAL LIA R++G +RDA L+Q LSL ++++ + +E+
Sbjct: 182 IREHLAWVLDKEGLAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + + L I ++G + L T + D+L
Sbjct: 242 GSISILALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLLVVKAGGDN 301
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVL 765
R F LS ++++ Q + ++ +++ + +QLA ++ L
Sbjct: 302 QRQSAVFDTNLSLS---IDRIFQMITVVTSHLPEIKKGTHPRIYAEMMTIQLAKEEGVAL 358
Query: 766 PS 767
PS
Sbjct: 359 PS 360
>gi|386582597|ref|YP_006079001.1| DNA polymerase III subunits gamma and tau [Streptococcus suis SS12]
gi|353734743|gb|AER15753.1| DNA polymerase III subunits gamma and tau [Streptococcus suis SS12]
Length = 555
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 161/286 (56%), Gaps = 6/286 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA L A+ + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVGGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
+ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YTIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKVTD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSL-LGQRISVPLVQELV 645
I L I +KEG+ D+ AL +IA R++G +RDA L+Q LSL Q++++ + +E+
Sbjct: 182 IQEHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQALSLSQDQQVTLEIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT 691
G IS L D + D+V +++L+ + + G MS+ AT
Sbjct: 242 GSISLRALDDYVASLRQGDSVTALQHLQTLFDQGKS----MSRFAT 283
>gi|126652951|ref|ZP_01725093.1| DnaX [Bacillus sp. B14905]
gi|126590281|gb|EAZ84403.1| DnaX [Bacillus sp. B14905]
Length = 595
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 157/291 (53%), Gaps = 1/291 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q + Y P++FR++ GQ V + L NA++ K Y+F GP GTGKTS A+IFA+AL
Sbjct: 3 YQAFYRVYRPQSFREMSGQAHVKRTLQNALLANKTTHAYLFSGPRGTGKTSTAKIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +CIS G ++ E N E I D+++ + + S+Y++
Sbjct: 63 NCEHAPAKEPCNECATCISITDGSHPDVIEFDAASNSRVEEIRDIIEKVRFAPASSRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VFIL ++ LP IISRCQ+F F ++ D
Sbjct: 123 YIIDEVHMLSTSAFNALLKTLEEPPPHAVFILATTEPHKLPATIISRCQRFDFKRLSTND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
II ++ + + ++ LK+IA + G +RDA L+Q +S G+++ + + G
Sbjct: 183 IIERMKVVLEDIELPYEEQGLKVIAQSAAGGMRDALSLLDQVVSFSGEKLKLEDTLLVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
IS + DL + + D + L ++ G +PL L L T D+L
Sbjct: 243 SISQDVFYDLAEALKAKDVAQMLALLEQLIVDGKDPLRLSEDLITFFRDLL 293
>gi|450160489|ref|ZP_21880034.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
66-2A]
gi|449239864|gb|EMC38564.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
66-2A]
Length = 558
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTNA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|450086676|ref|ZP_21853809.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NV1996]
gi|449219117|gb|EMC19095.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NV1996]
Length = 558
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENRHHGEAFDKNLTLSQE 317
>gi|450132921|ref|ZP_21870366.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NLML8]
gi|449152170|gb|EMB55882.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NLML8]
Length = 558
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTNA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|81427950|ref|YP_394949.1| DNA-directed DNA polymerase III subunit gamma/tau [Lactobacillus
sakei subsp. sakei 23K]
gi|78609591|emb|CAI54637.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
sakei subsp. sakei 23K]
Length = 571
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 212/422 (50%), Gaps = 44/422 (10%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ + Q L NA++ ++ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRPQRFDDVVGQETMTQTLKNAIITKQTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C +C + G ++ E+ N E I D+ D + + Y+I
Sbjct: 63 NCHYQKDGEPCNECETCRAITAGALNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKI 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ + +P IISR Q+F F ++ AD
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEVHKVPATIISRTQRFNFKRITAAD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ + +I ++ + D ALK+IA ++G +RDA L+Q LS +++ ++ G
Sbjct: 183 LFKRMAYILEQKEMTYDPAALKVIAKAAEGGMRDALSILDQVLSFSDNHVTLENALDVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKN---------LRVIMETGVEPLALMSQLATVITDIL 697
+++ AL AD V T+ + L+ I+ G + + L + D+L
Sbjct: 243 SLTE---------ALLADYVQTIHDHAPKAALQLLQQILAEGKDAQRFVEDLIEYVRDLL 293
Query: 698 ----------AGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKL 747
A D D H ++ LS E+ L + L+E ++QLR +N
Sbjct: 294 MYQQAPELVMANEMDLL-DEHFKQL--SDALSAEQ---LYTVIDILNETQQQLRFTNHPE 347
Query: 748 TWLTAALLQLAPDQQYVLPSS-SADTSFSHSPLDLENAGGRGMTRKGGE-RAEISNKETG 805
+L A ++L QQ V P++ SA+ S +P D N ++R+ + +A + ET
Sbjct: 348 IYLEVATVRLT--QQPVAPAAVSANVS---APAD--NEQVTQLSRQVAQLQAALQKLETA 400
Query: 806 VP 807
P
Sbjct: 401 GP 402
>gi|304440577|ref|ZP_07400463.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304370953|gb|EFM24573.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 589
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/363 (28%), Positives = 192/363 (52%), Gaps = 12/363 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY RTF ++VGQ+ V ++ V V Y+F G GTGKTS A+I ARA+
Sbjct: 2 YQALYRKYRSRTFDEVVGQDQVINSIKYQVKNSTVSHAYIFSGTRGTGKTSTAKILARAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ PC C +C S RG + ++ E+ N + I DL + S+Y++
Sbjct: 62 NCEHPIDGNPCNECETCKSILRGTNLDVVEMDAASNNGVDDIRDLREKAFYPPSTSKYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K+++ P+ ++FIL ++ ++ +P I+SR Q++ F ++
Sbjct: 122 YIIDEVHMLSKGAFNALLKILEEPPKHLIFILATTEIERVPQTILSRTQRYTFKRISIDT 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
I + I +KEG ID+ + LIA +DGS+RDA L+++ + IS + E++G
Sbjct: 182 ISKNISEILAKEGKSIDEAGIDLIAQMADGSMRDAVSLLDRVVAINDNNISYDKIIEVLG 241
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+ +++ L +L L++D + + ++ + + G + + L+ + + +IL
Sbjct: 242 VTTEDTLFELATSILNSDASSIIMSVANLADDGKDMMVLIDGIVSFFRNILIAK----NL 297
Query: 707 RHRRKFFRRQPLSKE-------EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759
+ RK R + + + ++ +K LSE + + R +K T L AALL++
Sbjct: 298 NYPRKIIRVRDMDRYVAIANAFSNSEILNIIKILSETKARSRYITNKRTMLEAALLEIVA 357
Query: 760 DQQ 762
+Q
Sbjct: 358 SRQ 360
>gi|258510125|ref|YP_003183559.1| DNA polymerase III subunits gamma and tau [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257476851|gb|ACV57170.1| DNA polymerase III, subunits gamma and tau [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 586
Score = 171 bits (433), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 111/361 (30%), Positives = 189/361 (52%), Gaps = 6/361 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + Y P+TF DLVGQ V Q L+NA+ ++ Y+F GP GTGKTS A++ A+A+
Sbjct: 3 YQALYRAYRPQTFEDLVGQPHVRQTLTNALKSGQLAHAYLFCGPRGTGKTSTAKLLAKAV 62
Query: 468 NC-QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYR 526
NC Q + +PC C +C S RG + +++E+ N + I DL D++ ++ +
Sbjct: 63 NCLQPRDGFEPCNACEACTSIQRGSNVDVQEIDAASNRGVDEIRDLRDHVHYLPTMAKKK 122
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+++ D+ L+P++++A+ K ++ P V+F+L ++ LP IISRCQ+F F ++
Sbjct: 123 VYIVDEVHMLTPEAFNALLKTLEEPPAHVLFVLATTEPHRLPATIISRCQRFDFRRIAPE 182
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELV 645
I+ L+ +A +GIE AL +A +DG LRDA EQ + G RI V ++V
Sbjct: 183 AIVERLRLVAQSQGIEAADSALWRLAEAADGGLRDALALFEQAAAFGNGRIDDTTVADVV 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G + LV L+ ++ + L +G + ++ L V+ D+ +
Sbjct: 243 GSVDIGSLVALVGDLAGRSFLSAMDRLGRWYASGKDASRIVHDLLQVVRDLFIVKLSQSP 302
Query: 706 DRHRRKFFR-RQPLSKEE---MEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQ 761
D K QP++ + ++ L A++ L E QLR + L A L+ LA ++
Sbjct: 303 DALAGKPVDPYQPVASRDDVTVDWLLAAMRKLGELYTQLRYVEEPRLALEAVLMGLAAER 362
Query: 762 Q 762
+
Sbjct: 363 R 363
>gi|392404452|ref|YP_006441064.1| DNA polymerase III, tau subunit [Turneriella parva DSM 21527]
gi|390612406|gb|AFM13558.1| DNA polymerase III, tau subunit [Turneriella parva DSM 21527]
Length = 457
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 128/219 (58%)
Query: 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC 469
+L KY PR F DLVGQ +Q+L NA+ RK+G Y+F+G G GKT+ ARI A+ALNC
Sbjct: 2 SLATKYRPRDFEDLVGQLAASQSLKNALEFRKIGHAYLFHGARGVGKTTMARILAKALNC 61
Query: 470 QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFV 529
+ + C C C+ G++ ++ E+ N ++I +L V + S+Y++++
Sbjct: 62 VNGPTSQICNVCEHCVEISEGRATDVIEIDAASNRGIDNIRELRAQAVFAPMKSRYKVYI 121
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ LSP+S++A+ K ++ P VVFI+ ++ L +P I SRCQ F F K +I
Sbjct: 122 LDEVHMLSPESFNALLKTLEEPPHHVVFIMATTELHKIPETIASRCQVFTFKKFNAREIA 181
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ 628
L I KE I ++DAL IA R +GSLRDA L+Q
Sbjct: 182 QRLAHILEKEQIAFERDALLPIAERGEGSLRDAISLLDQ 220
>gi|239825603|ref|YP_002948227.1| DNA polymerase III subunits gamma/tau [Geobacillus sp. WCH70]
gi|239805896|gb|ACS22961.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp. WCH70]
Length = 561
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 198/380 (52%), Gaps = 28/380 (7%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L +A+++ K+ Y+F GP GTGKTS A+I A+A+
Sbjct: 3 YQALYRVFRPQRFADVVGQEHVTKTLQSALLQNKISHAYLFSGPRGTGKTSAAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +CI G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPTAEPCNECPACIGITNGAIPDVLEIDAASNNRVDEIRDIRDKVKFAPTSVRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F ++
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRCQRFDFRRIPLHS 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRIS-------VPL 640
I+ L+ + ++GI+ +AL IA +DG +RDA LSLL Q IS +
Sbjct: 183 IVARLRQVIEQQGIKASDEALFAIARAADGGMRDA------LSLLDQAISFSDGELLLED 236
Query: 641 VQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--- 697
V + G +S L L+ DT +++ L +M+ G +P L+ L D+L
Sbjct: 237 VLAMTGSVSSATLASLVRAIYEKDTATSLQLLEEMMDQGKDPNRLIEDLILYYRDLLLYK 296
Query: 698 -----AGSYDFT-KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLT 751
G+ T D + + PLS + + ++ L++++++++ +N +L
Sbjct: 297 TAPHVEGAIKGTVVDDTFQHLAQSVPLS-----DIYETIEVLNKSQQEMKWTNHPRIFLE 351
Query: 752 AALLQLAPDQQYVLPSSSAD 771
AL++L QQ PS S++
Sbjct: 352 VALVKLC-HQQASYPSPSSE 370
>gi|339501824|ref|YP_004689244.1| DNA polymerase III subunit tau [Roseobacter litoralis Och 149]
gi|338755817|gb|AEI92281.1| DNA polymerase III subunit tau [Roseobacter litoralis Och 149]
Length = 584
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 163/299 (54%), Gaps = 6/299 (2%)
Query: 400 LGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSC 459
+ + + +Q L +KY P TF DLVGQ+ + Q L NA ++ ++ G GTGKT+
Sbjct: 1 MSETPHAPYQVLARKYRPETFADLVGQDAMVQTLKNAFEADRIAQAFIMTGIRGTGKTTT 60
Query: 460 ARIFARALNC-----QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLD 514
ARI A+ +NC S +PCG C C + G+ ++ E+ N +I +++D
Sbjct: 61 ARIIAKGMNCIGPDGTSGPTTEPCGTCEHCTAIMEGRHVDVMEMDAASNTGVANIREIID 120
Query: 515 NMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISR 574
++ ++Y++++ D+ LS +++A+ K ++ P V FI ++ + +P ++SR
Sbjct: 121 SVHYRAASARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSR 180
Query: 575 CQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLG 633
CQ+F +++ +I ++ IA+ EG EI +DA+ LIA ++GS RDA L+Q +S
Sbjct: 181 CQRFDLRRIEPEVMIDLMRKIATAEGAEIAQDAMALIARAAEGSARDATSLLDQAISHGA 240
Query: 634 QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV 692
+ V+ ++GL +++DL D+ L DT + L G +P+A++ LA +
Sbjct: 241 GETTAAQVRAMLGLADRGRVLDLFDMILRGDTAGALTELSAQYAEGADPMAVLRDLAEI 299
>gi|429737415|ref|ZP_19271279.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. oral
taxon 138 str. F0429]
gi|429152721|gb|EKX95534.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. oral
taxon 138 str. F0429]
Length = 612
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 197/378 (52%), Gaps = 19/378 (5%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P TF DLVGQ +++ L+ AV + Y+F GP GTGKTS A+I ARALNC
Sbjct: 6 LYRRWRPETFADLVGQEHISRTLARAVTSGQTSHAYLFTGPRGTGKTSTAKILARALNCA 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
PCG C+SC + G S ++ E+ N + I DL +++ + Y+I++
Sbjct: 66 EGPTLTPCGACDSCRAISDGSSMDVFEIDAASNRGIDEIRDLRESVKFAPTEGHYKIYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P RV+FIL ++ +P I SRCQ++ F ++ +I
Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPPRVIFILATTEPHKVPATIQSRCQRYDFHRITVTEIRD 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L + + GI D+DAL +IA ++DG +RDA L+Q + L + ++ VQE +GL+
Sbjct: 186 RLIRVCHESGIAADEDALAIIAVQADGGMRDALSILDQCTALAEGTLTAERVQEALGLVG 245
Query: 650 DEKLVDLLDLALSADTVNT-VKNLRVIMETGVEPLALMSQLATVITDILA-------GSY 701
++ + L +S T + L ++ G E ++++LA ++ GS
Sbjct: 246 -RAWIEKMALQISGRTAAPLITQLGELLHNGRELRQILAELAQYFRSLMIVGVGGTLGSA 304
Query: 702 DFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL---- 757
+ + +++E+ + L+ L+EA +++R+S + L+ L
Sbjct: 305 ELPDGQAEALREAAARFTQDEIMAI---LRKLNEAMQEIRVSPQPRIAAESMLIGLCRPA 361
Query: 758 --APDQQYVLPSSSADTS 773
AP+ V S+ ADT+
Sbjct: 362 DAAPEGAPVTVSNPADTA 379
>gi|335030535|ref|ZP_08524024.1| DNA polymerase III, subunit gamma and tau [Streptococcus infantis
SK1076]
gi|334266074|gb|EGL84561.1| DNA polymerase III, subunit gamma and tau [Streptococcus infantis
SK1076]
Length = 554
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 177/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ+++A+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQDVIARTLKQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I D+ D + +QY++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIRDIRDKSTYAPSIAQYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTPNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR--ISVPLVQELV 645
I + I KEGI+ + +A+++IA R++G +RDA L+Q L Q ++ + +E+
Sbjct: 182 IRDHIFQILKKEGIDYETEAVEIIARRAEGGMRDALSILDQALSLTQEATLTTAVSEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L + + D ++NL +I E G + L + DIL
Sbjct: 242 GTISLSALDNYVAALARKDVPGALENLDLIFENGKSMTRFVVDLLQYLRDILIVQAGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F R L ++ + E + A K+L++ + L+
Sbjct: 302 THHSDVFERNLDLPQDILFEMISLATKSLADIKASLQ 338
>gi|449919919|ref|ZP_21798232.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
1SM1]
gi|449966371|ref|ZP_21812317.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
15VF2]
gi|449159110|gb|EMB62489.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
1SM1]
gi|449170135|gb|EMB72867.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
15VF2]
Length = 558
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRAIYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|371777888|ref|ZP_09484210.1| DNA polymerase III subunits gamma and tau [Anaerophaga sp. HS1]
Length = 367
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 160/287 (55%), Gaps = 2/287 (0%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P TF +VGQ+ + L NA+ +++ Y+F GP G GKT+CARIFA+ +NC+++
Sbjct: 8 RKYRPNTFASVVGQSSITTTLQNAIKNQQLAHAYLFCGPRGVGKTTCARIFAKTINCENV 67
Query: 473 E-QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
+ C C+SC + + +S NI E+ N + I L+D + +Y +++ D
Sbjct: 68 TANFEACNECDSCKAFNENRSYNIHELDAASNNSVDDIRTLIDKVRVPPQMGKYSVYIID 127
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+ LS +++A K ++ PR +FIL ++ + I+SRCQ F F ++ D +
Sbjct: 128 EVHMLSQQAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQTFDFNRISVEDAVEH 187
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVGLISD 650
L+ +A EG+E +++ L +IA ++DG++RDA +Q+ + G+RIS V E + ++
Sbjct: 188 LKLVAKNEGVEAEEEGLNVIARKADGAMRDALSIFDQIVAFSGKRISYQQVIENLNVLDY 247
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+ L+D L DT N + L I+E G + + L + + D++
Sbjct: 248 DYYFKLVDAFLKEDTTNALLILDEILEHGFDEGHFVEGLCSHLRDLM 294
>gi|449883235|ref|ZP_21785012.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SA38]
gi|449926865|ref|ZP_21800978.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
4SM1]
gi|449160260|gb|EMB63537.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
4SM1]
gi|449250100|gb|EMC48179.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SA38]
Length = 558
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRAIYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|299144510|ref|ZP_07037589.1| DNA polymerase III, gamma and tau subunits [Peptoniphilus sp. oral
taxon 386 str. F0131]
gi|298517598|gb|EFI41338.1| DNA polymerase III, gamma and tau subunits [Peptoniphilus sp. oral
taxon 386 str. F0131]
Length = 548
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 190/359 (52%), Gaps = 12/359 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF +LVGQN + AL N + ++ Y+F G GTGKTS A+IFARA+
Sbjct: 2 YQALYRKYRSKTFDELVGQNHITTALKNQIANNEISHAYLFSGTRGTGKTSAAKIFARAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QY 525
NC E PC C +C+S + ++ E+ N + I +L + +V PP +Y
Sbjct: 62 NCLCSENGNPCNHCENCLSILDDRVMDVIEMDAASNNSVDDIRELKEKVV--YPPQNLKY 119
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ LS +++A+ KV++ P+ ++FIL ++ + +P I+SR Q+F F ++
Sbjct: 120 KVYIIDEVHMLSKSAFNALLKVLEEPPKHLIFILATTEPEKIPQTILSRTQRFNFKRINP 179
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQEL 644
II L+ I + E D+D LI++ SDG++RDA L+Q LS + IS L E+
Sbjct: 180 EIIIENLKNITALENKSCDEDVFSLISNNSDGAMRDALSLLDQCLSFTDKHISYNLATEI 239
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT-----VITDILAG 699
+G+ SD+ L + + + N + +L+ I G + L+S L + +I +
Sbjct: 240 LGITSDDILFKISRALIDRNLENAISSLQEIYSKGKDISILISDLISHFRNLMIVKTIKN 299
Query: 700 SYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ + + + + ++++ LK L+E ++ +NDK +++++
Sbjct: 300 TSELLYTTRLDDYIKEACML--SVDRIIDILKILNETLLNVKYANDKRIIFEMSIIKIT 356
>gi|448820290|ref|YP_007413452.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
plantarum ZJ316]
gi|448273787|gb|AGE38306.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
plantarum ZJ316]
Length = 565
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/361 (27%), Positives = 190/361 (52%), Gaps = 15/361 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L + + P+ F ++VGQ ++ Q L NA+M + Y+F GP GTGKTS A+IFA+ +
Sbjct: 2 YRALYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKVI 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC L +PC C +C + +G+ ++ E+ N E I D+ D + + Y++
Sbjct: 62 NCHHLVDGEPCNECETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV-- 645
+ +I +++ + D+ AL++IA+ ++G +RDA L+Q+ G +V L L+
Sbjct: 182 SYDRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDN-TVTLDDALMVT 240
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-------- 697
G ++ + L + + DT ++ +R I++ G + + L + D+L
Sbjct: 241 GSVTKQLLANYVSEVTDHDTKPALETMRQILQEGKDANRFIEDLISYTRDVLLYQQAPEM 300
Query: 698 AGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
S +D + + F +Q + E L Q +KTL++ ++Q+R + +L ++L
Sbjct: 301 VDSVAMGEDDQQFEAFAKQI----DAEVLYQMVKTLNDIQQQMRFTTHPDVYLEVLTVKL 356
Query: 758 A 758
A
Sbjct: 357 A 357
>gi|189485278|ref|YP_001956219.1| DNA polymerase III subunit gamma/tau [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287237|dbj|BAG13758.1| DNA polymerase III subunit gamma/tau [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 531
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 160/280 (57%), Gaps = 1/280 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P+ F ++VGQ ++Q L N++ +++ Y+F GP G GKT+ ARI A+ALNC+
Sbjct: 6 LARKFRPQNFDEVVGQEHISQTLKNSISEKRIAHAYLFSGPRGCGKTTMARILAKALNCK 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ KPCG C +C+ + S ++ E+ N + I L +N+ S S+Y+I++
Sbjct: 66 NGPTIKPCGVCENCVEISKSSSVDVLEIDGASNNGIDDIRVLRENVKFSTASSKYKIYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ ++ +++A+ K ++ P V+FI+ ++ +P I+SRCQ++ F + A+++
Sbjct: 126 DEAHQITAQAFNALLKTLEEPPAHVIFIMATTEQHKIPITILSRCQRYRFKLISGAEMVC 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLIS 649
++ I +EG EID +AL ++ S S GS+RDA L+Q +S RI+ ++ L+GL+
Sbjct: 186 AIKSIGQEEGFEIDDEALNIVTSASGGSMRDALSLLDQAVSSNTGRITGDYMRGLLGLLP 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689
+ +V + D D +K ++ I E G L L
Sbjct: 246 KDIIVSVTDNIAKGDIHAILKIVKEIYEQGYNILQFARDL 285
>gi|116333249|ref|YP_794776.1| DNA polymerase III, gamma/tau subunit [Lactobacillus brevis ATCC
367]
gi|116098596|gb|ABJ63745.1| DNA polymerase III, gamma/tau subunit [Lactobacillus brevis ATCC
367]
Length = 576
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 154/273 (56%), Gaps = 1/273 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F+D++GQ +V + L NA+ +++ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRPQQFKDMIGQEVVTRTLKNAITTKQISHAYLFAGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C++C + G ++ E+ N E I D+ D + + + Y++
Sbjct: 63 NCHHQTDGEPCNECDTCQAITNGTLNDVIEIDAASNNGVEEIRDIRDKVKYAPTVADYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR Q+F F ++ +D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQRFDFKRIAASD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ +I ++G+ D+ ALK+IA ++G +RDA L+Q LS I++ + G
Sbjct: 183 SYSRMTYILDQKGVTYDEQALKVIAKAAEGGMRDALSILDQALSFGDNEITLDNALLVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETG 679
++ E L + ++ DT + L+ ++E G
Sbjct: 243 SVTHELLATYMQQVVAGDTKAALATLQSVLEAG 275
>gi|397690783|ref|YP_006528037.1| DNA polymerase III subunit tau [Melioribacter roseus P3M]
gi|395812275|gb|AFN75024.1| DNA polymerase III subunit tau [Melioribacter roseus P3M]
Length = 527
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 188/352 (53%), Gaps = 9/352 (2%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+K+ P+ F ++VGQ + L NA+ ++ Y+F GP G GKT+ ARI A+ LNC +
Sbjct: 9 RKWRPQKFEEVVGQEHITTTLKNAIKNNRIAHAYLFAGPRGVGKTTTARILAKVLNCLNP 68
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+PC C C S +S ++ E+ N E I L +++ + +Y++++ D+
Sbjct: 69 LDGEPCNECEMCKSFHNSQSLDVIEIDGASNRRIEEIRSLRESVKYAPAKGKYKVYIIDE 128
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
L+P+S++A+ K ++ P +FI ++ + +P I+SRCQ+F F +++ I L
Sbjct: 129 VHMLTPESFNALLKTLEEPPEHTLFIFATTDVHKVPLTIVSRCQRFDFRRIELNTIKDLL 188
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDE 651
IA EGI+ID AL LIA ++DG+LRDAE +Q +S G++++ + +++ LI +
Sbjct: 189 SKIAEAEGIQIDDTALSLIAKKADGALRDAESLFDQIISYSGKKVNSEEISQMLNLIDQD 248
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLA----TVITDILAGSYDFTK-- 705
+ D LS D + R I + G + +++L + T +L S D +
Sbjct: 249 IYFRISDAILSKDYNAAFEVTRTIYDNGWNFIDFLNELNEHFRNIFTVVLRKSTDLVEAA 308
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ ++ K+ + S E + LR L +++ + +++ + D+ + AL QL
Sbjct: 309 ELYKEKYLLYKD-SFSESDLLR-ILTFINKTQYEIKSATDQRLKIEIALCQL 358
>gi|312864982|ref|ZP_07725210.1| DNA polymerase III, subunit gamma and tau [Streptococcus downei
F0415]
gi|311099093|gb|EFQ57309.1| DNA polymerase III, subunit gamma and tau [Streptococcus downei
F0415]
Length = 566
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 159/292 (54%), Gaps = 6/292 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF++LVGQ +VA L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFQELVGQEVVATTLKQAVASGKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPNQVDGEPCNDCDICRDITEGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQTA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLG-QRISVPLVQELV 645
I + I KEGI + AL LIA +++G +RDA L+Q LSL +++ + +E+
Sbjct: 182 IRQHMAEILDKEGIAYEDQALNLIARQAEGGMRDALSILDQALSLSADNQVTAAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G + L D L + D++ + NL I ++G MS+ AT + D L
Sbjct: 242 GSVGQAALDDYLANLIQHDSLAALTNLNTIFDSG----KGMSRFATDLLDYL 289
>gi|288799735|ref|ZP_06405194.1| DNA polymerase III, gamma and tau subunit protein [Prevotella sp.
oral taxon 299 str. F0039]
gi|288332983|gb|EFC71462.1| DNA polymerase III, gamma and tau subunit protein [Prevotella sp.
oral taxon 299 str. F0039]
Length = 591
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 120/409 (29%), Positives = 203/409 (49%), Gaps = 26/409 (6%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS-L 472
KY P +F +VGQ + + L NA+ K+ Y+F GP G GKT+CARIFA+ +NC +
Sbjct: 10 KYRPASFDTVVGQKALTETLKNAIKANKLAHAYLFCGPRGVGKTTCARIFAKTINCFTPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVF 530
Q + C C SC + + +S NI E+ N E+I L++ T PP +Y++F+
Sbjct: 70 AQGEACNHCESCAAFNEQRSFNIFELDAASNNSVENIKALMEQ--TRIPPQVGKYKVFII 127
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M DI+
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVQDIVN 187
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+ +A +EGI + +AL +IA ++DG +RDA +Q + Q I+ V E + ++
Sbjct: 188 HLESVAKQEGITYESEALTIIAEKADGGMRDALSIFDQTASFAQGNITYAKVLEDLNVLD 247
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAG------SYDF 703
E ++D +L + L I+ G + + LA I ++L S
Sbjct: 248 VENYFKMIDFSLENKVSELMLLLNSIVSRGFDYGNISVGLAAHIRNVLMSKDEKTVSLIE 307
Query: 704 TKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQY 763
T D R+++ ++ +K L +ALK L++ + + S++K + L+Q+A Q
Sbjct: 308 TSDSLRQRY--KEQAAKCPTSFLYKALKLLNQCDINYKQSSNKALLVELTLIQVA---QI 362
Query: 764 VLPSSSADTSFSHSP------LDLENAGGRGMTRKGGERAEISNKETGV 806
P + + SP L A R T K + +S+K+ V
Sbjct: 363 TQPEDADSDASGRSPKCLKTLFKLLTASNRTTTDK---QVSVSDKQKAV 408
>gi|149179572|ref|ZP_01858104.1| DNA polymerase III gamma and tau subunits [Planctomyces maris DSM
8797]
gi|148841589|gb|EDL56020.1| DNA polymerase III gamma and tau subunits [Planctomyces maris DSM
8797]
Length = 484
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 163/295 (55%), Gaps = 1/295 (0%)
Query: 403 NRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARI 462
+++ ++ L +++ P+ F ++VGQ +VAQAL NA+ +V Y+F G G GKTS ARI
Sbjct: 3 SKSMQYTVLARRFRPQNFSEVVGQGMVAQALQNAIRGDRVAHAYLFTGARGVGKTSMARI 62
Query: 463 FARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP 522
A+ALNC + PCG C C + G ++ E+ N + I L N+
Sbjct: 63 LAKALNCPHTQDGIPCGECEVCQNIAVGSDVDVLEIDGASNRGIDDIRSLRANVNVRSMR 122
Query: 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPK 582
S+Y+I++ D+ L+ ++++A+ K ++ P V FI ++ + LP I+SRCQ+F F
Sbjct: 123 SKYKIYIIDEVHMLTKEAFNALLKTLEEPPPNVKFIFCTTEPNKLPDTILSRCQRFDFGY 182
Query: 583 MKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLV 641
+++ I L+ IA E + + DA++L+A R+ GS+RD++ +QL G+ ++ V
Sbjct: 183 IEENSICDRLKQIAEAEQVSVADDAIQLVARRAGGSMRDSQSIFDQLLSFGESHLTAESV 242
Query: 642 QELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDI 696
++G SDE+L++L+D + + + + GV+ + QL + D+
Sbjct: 243 HRILGTASDERLIELIDALIEQKRDVALTHFDAALNAGVQLNEFVDQLLNYLRDL 297
>gi|335357635|ref|ZP_08549505.1| DNA polymerase III subunits gamma and tau [Lactobacillus animalis
KCTC 3501]
Length = 578
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 195/376 (51%), Gaps = 15/376 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F DLVGQ + + L NA++ ++ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRPQVFSDLVGQEFITKTLKNALLTKQTTHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ + +PC C +C + G+ ++ E+ N E I D+ D + + Y++
Sbjct: 63 NCRNQKDGEPCNQCETCKAITAGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ +P IISR Q+F F ++
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPTNVVFILATTEPHKIPTTIISRTQRFDFRRITPQA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ +++I ++G D+ ALK+IA ++G +RDA L+Q LS ++++ + G
Sbjct: 183 ILKRMEYILQQKGFTYDEAALKVIAKAAEGGMRDALSILDQVLSFGDNQVTLDNALLVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--------- 697
++ + L L ++ DT + + + I+E G + L+ L D+L
Sbjct: 243 SVTRDNLTKYLHQVVAKDTSSALATIHEILEDGKDAKRLIEDLINYCRDLLLYQQAPKLV 302
Query: 698 AGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
S D +KF + + E+L Q + L+E ++ +R + + +L ++L
Sbjct: 303 EESELGMLDNDFKKF-----AGEVDPEQLYQMIDILNEQQENMRFTVHEAIYLEVLTVKL 357
Query: 758 APDQQYVLPSSSADTS 773
+ Q P ++ TS
Sbjct: 358 SRLQVTKTPVTTQVTS 373
>gi|338730377|ref|YP_004659769.1| DNA polymerase III subunits gamma and tau [Thermotoga thermarum DSM
5069]
gi|335364728|gb|AEH50673.1| DNA polymerase III, subunits gamma and tau [Thermotoga thermarum
DSM 5069]
Length = 486
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 163/282 (57%), Gaps = 6/282 (2%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+ F ++ Q L NA+ + KV Y+F GP GTGKTS ARI A+ALNC
Sbjct: 9 LYRKYRPKCFNQIIDQEQAKLVLQNAIKKNKVSHAYIFAGPRGTGKTSIARILAKALNCP 68
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP-PSQYRIFV 529
+ +PC C+SC++ D+G ++ E+ N + I + D V RP Y++++
Sbjct: 69 NRVDYEPCCKCDSCLAIDKGIHPDVIELDAASNRGIDEIRRIRD-AVGFRPMMGNYKVYI 127
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ L+ ++++A+ K ++ P +VVF+L +++L+ +P IISRCQ F + + +++
Sbjct: 128 VDEFHMLTREAFNALLKTLEEPPEKVVFVLATTNLERVPPTIISRCQVIQFKNLSEKNML 187
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELVGL 647
++ +A E + ID++A +I R+ GSLRDA LEQ+S Q +I V +V++ +GL
Sbjct: 188 QHIKNVAQNEQMSIDEEAALIIVKRASGSLRDALSMLEQVSSYAQDGKIDVSVVEKALGL 247
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETG--VEPLALMS 687
+ + + D ++ L D V VK + + + G V+ L MS
Sbjct: 248 VPTKAVEDYIEAILKGDIVGLVKLIDEVYDHGYDVDQLVQMS 289
>gi|403238558|ref|ZP_10917144.1| DNA polymerase III subunits gamma and tau [Bacillus sp. 10403023]
Length = 562
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 190/359 (52%), Gaps = 13/359 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+TF D+VGQ + + L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQTFHDVVGQEHITKTLQNALLQEKFSHAYLFSGPRGTGKTSAAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHSPVAEPCNECAACRGITDGSIADVIEIDAASNNGVDEIRDIRDKVKYAPSVVRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F ++
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRCQRFDFRRITTQA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ ++ I +++ + +D AL +IA ++G +RDA L+Q +S +++ + V + G
Sbjct: 183 IVGRMKTIIAEQNVSVDDQALYVIARAAEGGMRDALSLLDQAISFSDEKVKLEDVLVITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+S L +++ D +K L +M+ G +P+ + L D+L +
Sbjct: 243 AVSQSFLTNIVRAIRDRDVRTALKTLDEMMDHGKDPMRFIEDLIFYYRDMLL----YQTA 298
Query: 707 RHRRKFFRRQPLSKEEME--------KLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ R + ++ E ++ + + L++A+++++ +N +L AL++L
Sbjct: 299 PQLEEVLERVLVDEDFTELAKSISNHEIYETIDILNQAQQEMKWTNHPRIFLEVALVKL 357
>gi|282882939|ref|ZP_06291544.1| DNA polymerase III, gamma and tau subunit [Peptoniphilus lacrimalis
315-B]
gi|281297350|gb|EFA89841.1| DNA polymerase III, gamma and tau subunit [Peptoniphilus lacrimalis
315-B]
Length = 577
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 164/293 (55%), Gaps = 5/293 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L +KY P F ++GQ + +L N + +V Y+F G GTGKTS A+IFARA+
Sbjct: 2 YKALYRKYRPLDFNQMIGQEALVMSLKNQIKNNEVSHAYLFSGTRGTGKTSAAKIFARAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QY 525
NC+ PC C SC+S S ++ E+ N + I DL D ++ PP+ +Y
Sbjct: 62 NCEHPIDGNPCNKCKSCLSILNNTSVDVVEMDAASNNGVDDIRDLKDKVI--YPPTFLKY 119
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ LS +++A+ K+++ P ++FIL ++ + +P I+SR QKF F ++
Sbjct: 120 KVYIIDEVHMLSKGAFNALLKILEEPPSHLIFILATTEKEKIPATILSRTQKFEFSRVSL 179
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQEL 644
+II L++I+ EG +D + +LIA SDG++RDA L+Q LS IS+ ++
Sbjct: 180 ENIIKRLKYISQMEGKTLDDEVYQLIAKTSDGAMRDALSVLDQLLSFDSDHISIEKAMDV 239
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+G+ S E L +L L+ D + + I G + L+L +QL + D++
Sbjct: 240 LGISSSESLFELTSAYLNKDAARAISVIDDIAIQGKDFLSLNNQLLKHMRDLM 292
>gi|450076132|ref|ZP_21849697.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
N3209]
gi|449212929|gb|EMC13277.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
N3209]
Length = 558
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVF+L ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFVLATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQRALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|319947251|ref|ZP_08021484.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus australis
ATCC 700641]
gi|417920586|ref|ZP_12564088.1| DNA polymerase III, subunit gamma and tau [Streptococcus australis
ATCC 700641]
gi|319746493|gb|EFV98753.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus australis
ATCC 700641]
gi|342828511|gb|EGU62881.1| DNA polymerase III, subunit gamma and tau [Streptococcus australis
ATCC 700641]
Length = 558
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 164/293 (55%), Gaps = 11/293 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ ++A L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFGQLVGQEVIATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C + G ++ E+ N + I D+ D + + +++
Sbjct: 62 NCPNQKGGEPCNDCYICEAITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAPHKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTPA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L+ + KEGI+ +++A+ +IA R++G +RDA L+Q LSL G +++ +E+
Sbjct: 182 IQDHLKAVLDKEGIDYEEEAVAIIARRAEGGMRDALSILDQALSLTAGAQLTTATAEEIT 241
Query: 646 GLISDEKLVDLLDLALSA-DTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS E L DL ALSA D + L +I + G +A +TD+L
Sbjct: 242 GSISQEAL-DLYVAALSAQDATAALDQLNLIFDNG-------KNMARFVTDLL 286
>gi|167754078|ref|ZP_02426205.1| hypothetical protein ALIPUT_02366 [Alistipes putredinis DSM 17216]
gi|167658703|gb|EDS02833.1| DNA polymerase III, subunit gamma and tau [Alistipes putredinis DSM
17216]
Length = 639
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 105/357 (29%), Positives = 184/357 (51%), Gaps = 17/357 (4%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P TF +VGQ + L NA+ R ++ Y+F GP G GKT+CARIFA+A+NC
Sbjct: 9 RKYRPATFSSVVGQKHITSTLKNAIERGQLAHAYLFCGPRGVGKTTCARIFAKAINCLHP 68
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
E + C C SC S + G+S NI E+ N E I L++ + +Y +F+ D+
Sbjct: 69 EGAEACNACESCRSFNDGRSLNIHELDAASNNSVEDIRSLIEQVRIIPQVGRYSVFIIDE 128
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ P +FIL ++ + I+SRCQ + F +++ D + L
Sbjct: 129 VHMLSAAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIYDFNRIRVEDSVEYL 188
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDA-EMTLEQLSLLGQRISVPLVQELVGLISDE 651
++IAS+EGI D ++L LIA ++DG +RDA M + +S GQ + V + + ++ +
Sbjct: 189 KYIASQEGITADDESLNLIAQKADGGMRDALSMFDKAVSFCGQELRYQEVAQTLNVLDYD 248
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS-------YDFT 704
+ + LS + V + + ++ G M+ L + D+L +FT
Sbjct: 249 TYFSMTETLLSGNYVEALLSFDNVLARGFSGQTFMAGLNRHLRDLLVARNEPSLRLLEFT 308
Query: 705 ---KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+R+R + P E L A+ L++ + ++R S+++ + L+++A
Sbjct: 309 GTLMERYRTQAAACPP------EFLFGAISLLTDLDGKIRQSSNQRLLVELGLMKIA 359
>gi|375087225|ref|ZP_09733607.1| DNA polymerase III, subunit gamma and tau [Megamonas funiformis YIT
11815]
gi|374562042|gb|EHR33377.1| DNA polymerase III, subunit gamma and tau [Megamonas funiformis YIT
11815]
Length = 637
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 160/284 (56%), Gaps = 1/284 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L +K+ P+ F DL+GQ +++ LSNA+ KV Y+F GP GTGKTS A+I A+AL
Sbjct: 3 YMALYRKWRPQDFSDLIGQEHISETLSNAISTGKVAHAYLFSGPRGTGKTSTAKILAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ P PC C C + G ++ E+ N + I DL + + + +Y++
Sbjct: 63 NCEHGPTPTPCNQCVCCQKINDGSFMDVFEIDAASNRGIDEIRDLRETVKFAPVDGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P VVFIL ++ + +P I SRCQ++ F ++ D
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPSHVVFILATTEVHKVPITIQSRCQRYDFKRITKDD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L I + G+ DKDAL +IA ++DG +RDA L+Q L+ ++V V++++G
Sbjct: 183 ILKRLVMITDEMGLNADKDALSIIAIQADGGMRDALSLLDQCLAFTKDELTVTQVRKVLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLA 690
L+ + + + D D+ + L I+ G E L+++L
Sbjct: 243 LVGHDWVWQITDALAKKDSQTILTILDEIIAQGKEIKQLLNELV 286
>gi|336394687|ref|ZP_08576086.1| DNA polymerase III subunits gamma and tau [Lactobacillus farciminis
KCTC 3681]
Length = 568
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 157/273 (57%), Gaps = 1/273 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+TF D++GQ+++ Q L NAV Y+F GP GTGKTSCA+I A+A+
Sbjct: 3 YQALYRVWRPQTFSDVIGQDVITQTLRNAVASNMTSHAYLFSGPRGTGKTSCAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C++ + + ++ E+ N E I D+ D + + ++Y++
Sbjct: 63 NCLNPQDGEPCNECEICLAANENRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTEAKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR Q F F ++ D
Sbjct: 123 YIIDEVHMLSQGAFNALLKTLEEPPANVMFILATTEPQKIPATIISRTQSFNFRRISKQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + +I + + I+ D++ L +IA+ ++G +RDA L+Q LS +++ QE+ G
Sbjct: 183 ILKRMTFILNDKNIKYDEEGLDIIAASAEGGMRDALSILDQALSYGDDELTLKNAQEVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETG 679
+S+E++V + + +L I+E+G
Sbjct: 243 ALSNEQIVSYMTAIAENKPAQALTSLYQILESG 275
>gi|418098233|ref|ZP_12735332.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 6901-05]
gi|353769593|gb|EHD50109.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 6901-05]
Length = 551
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 177/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F PL ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLPLPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|322388028|ref|ZP_08061634.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus infantis
ATCC 700779]
gi|419844258|ref|ZP_14367556.1| DNA polymerase III, subunit gamma and tau [Streptococcus infantis
ATCC 700779]
gi|321141049|gb|EFX36548.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus infantis
ATCC 700779]
gi|385702042|gb|EIG39194.1| DNA polymerase III, subunit gamma and tau [Streptococcus infantis
ATCC 700779]
Length = 554
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 175/337 (51%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVARTLKQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I D+ D + +QY++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIRDIRDKSTYAPSIAQYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTPNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR--ISVPLVQELV 645
I + I KEGI+ + +A+++IA R++G +RDA L+Q L Q ++ + +E+
Sbjct: 182 IRDHIFQILEKEGIDYETEAVEIIARRAEGGMRDALSILDQALSLTQEATLTTAVSEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L + D ++NL +I E G + L + DIL
Sbjct: 242 GTISLSALDHYVATLAQKDVPGALQNLDLIFENGKSMTRFVVDLLQYLRDILIVQAGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F R L ++ + E + A ++L++ + L+
Sbjct: 302 THHSDAFERNLALPQDVLFEMISLATRSLADIKASLQ 338
>gi|310639621|ref|YP_003944379.1| DNA polymerase iii, subunits gamma and tau [Paenibacillus polymyxa
SC2]
gi|309244571|gb|ADO54138.1| DNA polymerase III, subunits gamma and tau [Paenibacillus polymyxa
SC2]
Length = 590
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 157/297 (52%), Gaps = 3/297 (1%)
Query: 403 NRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARI 462
R H L + + P+ F+D+VGQ + Q L NA+ + Y+F GP GTGKTS A+I
Sbjct: 5 ERALEHIALYRAWRPQAFKDMVGQQHIIQTLQNAIRENRTSHAYLFSGPRGTGKTSAAKI 64
Query: 463 FARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP 522
A+A+NC+ P+PC C +C G +++E+ N E I DL D + +
Sbjct: 65 LAKAINCEHGPAPEPCNECEACKRITAGAVMDVQEIDAASNRGVEEIRDLRDKVKYAPTE 124
Query: 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPK 582
++++++ D+ L+ ++++A+ K ++ P V+FIL ++ +P IISRCQ+F F +
Sbjct: 125 VRHKVYIIDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHRIPATIISRCQRFDFRR 184
Query: 583 MKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLV 641
+ + L I +E I+ D DAL+ IA SDG +RDA L+Q+ S R++ V
Sbjct: 185 VSLEEQTERLDLICQQENIQADLDALQYIARLSDGGMRDAVSVLDQISSFTDGRVTYQQV 244
Query: 642 QELVGLISDEKLVDLLDLALSADTVNTVKNL-RVIMETGVEPLALMSQLATVITDIL 697
++ G I+ E+ L LAL + V TV L M+ G M L D+L
Sbjct: 245 LDMTGGIASEQFGKLA-LALLKEDVGTVLQLIENFMQEGKSADKCMENLLYYFRDLL 300
>gi|183222800|ref|YP_001840796.1| DNA polymerase III subunit gamma [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|167781222|gb|ABZ99520.1| DNA polymerase III gamma subunit [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 497
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 155/277 (55%), Gaps = 7/277 (2%)
Query: 402 DNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCAR 461
D + HQ L +KY P+ FRD++ Q+L +L NA +K+G Y+F GP G GKT+ AR
Sbjct: 4 DQMSENHQVLFRKYRPQFFRDVIYQDLAVGSLQNAFKSKKIGHAYIFIGPRGVGKTTIAR 63
Query: 462 IFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP 521
I A+ LNC+ + +PC C SC+ +G S ++ E+ N ++I +L +N+ +
Sbjct: 64 ILAKRLNCERPDGVEPCNECTSCLEITKGNSNDVFEIDAASNSGVDNIRELRENVKFNAM 123
Query: 522 PSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFP 581
+YR+++ D+ LS +++A+ K ++ P VVFIL ++ +P I+SRCQ F F
Sbjct: 124 GGKYRVYILDEVHMLSGAAFNALLKTLEEPPAHVVFILATTEYHKIPETILSRCQDFHFR 183
Query: 582 KMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRISVP 639
K+ + ++ + +KEG++ D + L IA + DGS+RD +EQ + G V
Sbjct: 184 KVPVTVLQNYIETLCTKEGLKYDSEGLFWIAKKGDGSVRDTLSFMEQAVIFTDGNLTGVK 243
Query: 640 LVQELVGLISDEKLVD----LLDLALSADTVNTVKNL 672
L ++++G + D L+D + SA T++NL
Sbjct: 244 L-RKMIGYHGIDTFTDFLNQLIDTSQSAQIFETLENL 279
>gi|169830250|ref|YP_001716232.1| DNA polymerase III subunits gamma and tau [Candidatus Desulforudis
audaxviator MP104C]
gi|169637094|gb|ACA58600.1| DNA polymerase III, subunits gamma and tau [Candidatus Desulforudis
audaxviator MP104C]
Length = 447
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 190/350 (54%), Gaps = 11/350 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F ++VGQ+ V + L NAV +V Y+F GP GTGKT+ A++ A+A+
Sbjct: 3 YQTLYRTWRPQRFGEIVGQDHVVRTLQNAVRAERVAHAYLFCGPRGTGKTTAAKVLAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PCG C SC+S G + ++ E+ N + + +L + + ++++
Sbjct: 63 NCTERDGAEPCGECASCVSIGTGSAVDVLEIDAASNRGVDEVRELRERVKFHPAAGRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+F+L ++ +P IISRCQ+F F ++ D
Sbjct: 123 YIIDEVHMLTNEAFNALLKTLEEPPPHVIFVLATTEPHKVPLTIISRCQRFDFRRIGRPD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELVG 646
++ L+ +A++ G+ ++ L LIA +DGSLRDA L+Q + L G R+++ + ++G
Sbjct: 183 LVSRLEEVAAQAGLAVESGVLALIARVADGSLRDALGILDQAAALGGNRVTLADLHSILG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ E L L+ + +T + L+ + G E + +L + +L G++
Sbjct: 243 TVTGEVLERLVGHLAAGETGAALLVLQEVEAQGKELRIIARELTDYLRGLLYGAFGAGGA 302
Query: 707 RHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
S + E+L + L + AE+++R + ++ L A+++
Sbjct: 303 TR----------SDLDRERLIEFLALFARAEQEMRFATRQILPLELAVVR 342
>gi|21910574|ref|NP_664842.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
MGAS315]
gi|21904775|gb|AAM79645.1| DNA polymerase III gamma/tau subunits [Streptococcus pyogenes
MGAS315]
Length = 556
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 157/292 (53%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L W+ KEGI + DAL LIA R++G +RDA L+Q LSL ++++ + +E+
Sbjct: 182 IREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + + L I ++G + L T + D+L
Sbjct: 242 GSISMLALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLL 293
>gi|406658675|ref|ZP_11066815.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus iniae
9117]
gi|405578890|gb|EKB53004.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus iniae
9117]
Length = 557
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 158/286 (55%), Gaps = 6/286 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQTVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVAGEPCNHCDICKDITAGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPSENVVFILATTELHKIPATILSRVQRFEFKSIKQQA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLG-QRISVPLVQELV 645
I L I S+E I ++DAL LIA R++G +RDA L+Q LSL ++++ + +E+
Sbjct: 182 IKEHLAKILSEEAISYEEDALFLIAKRAEGGMRDALSILDQALSLSADNQVTLAVAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT 691
G IS + L D + + ++NL VI E G MS+ AT
Sbjct: 242 GSISIKALDDYVSQVIQKSPALALENLTVIFENGKS----MSRFAT 283
>gi|374294621|ref|YP_005044812.1| DNA polymerase III, subunit gamma/tau [Clostridium clariflavum DSM
19732]
gi|359824115|gb|AEV66888.1| DNA polymerase III, subunit gamma/tau [Clostridium clariflavum DSM
19732]
Length = 552
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 193/358 (53%), Gaps = 14/358 (3%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P F D+V Q V + L N+++ ++ Y+F G GTGKT+ A+IF+RA+NC
Sbjct: 6 LYRKWRPMVFEDVVEQEHVVKTLKNSILAGRIAHAYLFCGTRGTGKTTMAKIFSRAINCL 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ PC C C G ++ E+ N +++ ++ D +V + ++Y++++
Sbjct: 66 NSTDGDPCNECEICKGILNGSLLDVIEIDAASNNSVDNVREIRDEVVYAPSKARYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A+ K ++ P VVFIL ++ LP I+SRCQ+F F ++ I+
Sbjct: 126 DEVHMLSTGAFNALLKTLEEPPSHVVFILATTEPHKLPATILSRCQRFDFRRIPVESIVK 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-ISVPLVQELVGLIS 649
+++IA G+ I+++ L+LIA SDG+LRDA L+Q LG + ++ V +VG+++
Sbjct: 186 RIRYIAENSGVSIEEEGLRLIARMSDGALRDAISILDQCISLGNKHLTYEDVLSIVGIVN 245
Query: 650 DEKLVDLLDLALSADTVNTV-KNLRVIMETGVEPLALMSQLATVITDILAGS-------- 700
+ + D++D A++A V+ V + + V++ G +S L ++L S
Sbjct: 246 NTFVADVVD-AINAKEVDRVLQFINVLVMDGKNITQFVSDLILYYRNLLICSTSKNPEEI 304
Query: 701 YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ +KD R + + LS E+ + +K LS E +R SN L AL++L
Sbjct: 305 VEASKDMIERMKEQCKSLSHLEITSI---IKELSALENTMRWSNHARILLEVALIKLC 359
>gi|28895734|ref|NP_802084.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
SSI-1]
gi|28810983|dbj|BAC63917.1| putative DNA polymerase III gamma/tau subunit [Streptococcus
pyogenes SSI-1]
Length = 557
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 157/292 (53%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 63 NCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L W+ KEGI + DAL LIA R++G +RDA L+Q LSL ++++ + +E+
Sbjct: 183 IREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAIAEEIT 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + + L I ++G + L T + D+L
Sbjct: 243 GSISMLALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLL 294
>gi|450114951|ref|ZP_21863642.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
ST1]
gi|449228632|gb|EMC27992.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
ST1]
Length = 558
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS++
Sbjct: 298 GGENTHHGETFDKNLTLSQD 317
>gi|307704666|ref|ZP_07641566.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis
SK597]
gi|307621775|gb|EFO00812.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis
SK597]
Length = 551
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSETEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVTKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L +E + E +R A +L++ + L+
Sbjct: 302 THHSPVFVENLALPQENLFEMIRLATVSLADIKSSLQ 338
>gi|139473596|ref|YP_001128312.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
str. Manfredo]
gi|306827119|ref|ZP_07460411.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus pyogenes
ATCC 10782]
gi|421892138|ref|ZP_16322842.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
NS88.2]
gi|134271843|emb|CAM30078.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes str.
Manfredo]
gi|304430672|gb|EFM33689.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus pyogenes
ATCC 10782]
gi|379982112|emb|CCG26564.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
NS88.2]
Length = 556
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 157/292 (53%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L W+ KEGI + DAL LIA R++G +RDA L+Q LSL ++++ + +E+
Sbjct: 182 IREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + + L I ++G + L T + D+L
Sbjct: 242 GSISMLALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLL 293
>gi|86140173|ref|ZP_01058735.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. MED193]
gi|85823110|gb|EAQ43323.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. MED193]
Length = 608
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 163/297 (54%), Gaps = 6/297 (2%)
Query: 402 DNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCAR 461
D+ ++Q L +KY P TF DLVGQ+ + + L NA ++ +V G GTGKT+ AR
Sbjct: 7 DSSQPQYQVLARKYRPETFADLVGQDAMVRTLKNAFETNRIAQAFVMTGIRGTGKTTTAR 66
Query: 462 IFARALNCQSLE---QP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNM 516
I A+ +NC + QP +PCG C C + G+ ++ E+ I +++D++
Sbjct: 67 IIAKGMNCIGPDGTGQPTTEPCGVCEHCTAIMEGRHVDVMEMDAASRTGVGDIREIIDSV 126
Query: 517 VTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576
++Y+I++ D+ LS +++A+ K ++ P V FI ++ + +P ++SRCQ
Sbjct: 127 QYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQ 186
Query: 577 KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR 635
++ +++ +I ++ IA+ EG EI +DAL LI ++GS+RDA L+Q +S
Sbjct: 187 RYDLRRIEPEVMIALMRKIATAEGAEITEDALALITRAAEGSVRDATSLLDQAISHGAGE 246
Query: 636 ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV 692
+ V+ ++GL +++DL+D+ L D + L G +PLA++ LA +
Sbjct: 247 TTADQVRAMLGLADRGRVLDLMDMVLRGDAAGALTELSAQYAEGADPLAVLRDLAEI 303
>gi|78043423|ref|YP_361464.1| DNA polymerase III subunit gamma and tau [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995538|gb|ABB14437.1| putative DNA polymerase III, gamma/tau subunits [Carboxydothermus
hydrogenoformans Z-2901]
Length = 511
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 161/279 (57%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P+TF ++VGQ + + L NAV +V Y+F GP GTGKT+ A++ A+A+NC+
Sbjct: 5 LYRKWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAVNCE 64
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ +PC C SCI + N+ E+ N + I +L +++ +Y++++
Sbjct: 65 HPVEGEPCNQCPSCIGINNQSLLNVFEIDAASNRGIDEIRELRESIKLVPAQGKYKVYII 124
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P V+FIL ++ + +P I+SRCQ+F F ++ I
Sbjct: 125 DEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRCQRFDFKRISTKTIWE 184
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
L+ IA KE ++ + +AL LIA S+G LRDA ++Q+ + +I+V +++G +S
Sbjct: 185 HLKNIAEKEKLQYEAEALHLIAEASEGGLRDALSLMDQILVFNPKITVEDTLKVLGFVSW 244
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689
K+++L+ + + + + ++E G++ + Q+
Sbjct: 245 RKILELISAIRENNQLKIINEIAEVVERGLDVKLFVQQI 283
>gi|450001490|ref|ZP_21825672.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
N29]
gi|450005326|ref|ZP_21826627.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NMT4863]
gi|449184455|gb|EMB86399.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
N29]
gi|449188744|gb|EMB90441.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NMT4863]
Length = 558
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 167/320 (52%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRAIYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVF+L ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFVLATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|325288352|ref|YP_004264533.1| DNA polymerase III tau subunit [Syntrophobotulus glycolicus DSM
8271]
gi|324963753|gb|ADY54532.1| DNA polymerase III, tau subunit [Syntrophobotulus glycolicus DSM
8271]
Length = 531
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 161/279 (57%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ PR F+DLVGQ V + L+NA++ KV Y+F GP GTGKT+ A+I A+ALNC
Sbjct: 6 LYREWRPRRFQDLVGQEHVKRILTNALISNKVAHAYLFSGPRGTGKTTAAKILAKALNCA 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+PC C+SC D+G++ ++ E+ N + I +L +N+ + +Y++++
Sbjct: 66 FRRGEEPCNECDSCQGIDQGQAMDVLEIDAASNRGIDEIRNLRENVKLAATSGEYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P VVFI+ ++ +P I+SR Q+F F ++ I+
Sbjct: 126 DEVHMLTAEAFNALLKTLEEPPTGVVFIMATTEPHKVPLTILSRVQRFEFHRISPEMIVQ 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
LQ + +I ++AL +IAS+++G LRDA L+Q L I++ V E++G++ +
Sbjct: 186 RLQEVCDSLDRKIAEEALMVIASKAEGGLRDALSILDQCLLHEGDITLEFVFEILGVVGE 245
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689
DLL+ L D + L + G +P ++ +L
Sbjct: 246 SFSADLLEAILGEDCGLVLTKLNDAVAKGRDPRQIIREL 284
>gi|400755669|ref|YP_006564037.1| DNA polymerase III subunit tau [Phaeobacter gallaeciensis 2.10]
gi|398654822|gb|AFO88792.1| DNA polymerase III subunit tau [Phaeobacter gallaeciensis 2.10]
Length = 611
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 165/309 (53%), Gaps = 8/309 (2%)
Query: 390 SEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFY 449
+ G + GQ D +G++Q L +KY P TF DLVGQ+ + + L NA ++ ++
Sbjct: 4 TAGDTAGQAP--DQGSGQYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMT 61
Query: 450 GPHGTGKTSCARIFARALNC-----QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNF 504
G GTGKT+ ARI A+ +NC Q +PCG C C + G+ ++ E+
Sbjct: 62 GIRGTGKTTTARIIAKGMNCIGEDGQGGPTTEPCGKCEHCTAIMEGRHVDVMEMDAASRT 121
Query: 505 DFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564
I +++D++ ++Y+I++ D+ LS +++A+ K ++ P V FI ++ +
Sbjct: 122 GVGDIREIIDSVQYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEI 181
Query: 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEM 624
+P ++SRCQ+F +++ +I LQ IA E +I +DAL LI ++GS RDA
Sbjct: 182 RKVPVTVLSRCQRFDLRRIEPEVMIALLQKIAGAENAQIAEDALALITRAAEGSARDATS 241
Query: 625 TLEQ-LSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPL 683
L+Q +S + V+ ++GL +++DL+D+ L D + + L G +PL
Sbjct: 242 LLDQAISHGAGETTADQVRAMLGLADRGRVLDLIDMILRGDAASALTELSAQYAEGADPL 301
Query: 684 ALMSQLATV 692
A++ LA +
Sbjct: 302 AVLRDLAEI 310
>gi|414085491|ref|YP_006994202.1| DNA polymerase III subunits gamma and tau [Carnobacterium
maltaromaticum LMA28]
gi|412999078|emb|CCO12887.1| DNA polymerase III, subunits gamma and tau [Carnobacterium
maltaromaticum LMA28]
Length = 628
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 106/363 (29%), Positives = 189/363 (52%), Gaps = 21/363 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F+D+ GQ + Q L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRPQRFQDIAGQQAITQTLRNALIQGKSSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NCQ LE +PC C +C + G+ ++ E+ N E I D+ D + + Y++
Sbjct: 63 NCQFLEDGEPCNECETCKAITSGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTSADYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKNVIFILATTEPHKIPLTIISRTQRFDFKRISVKD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
I + +I ++E I + AL +IA ++G +RDA L+Q+ G ++V + G
Sbjct: 183 ICARMVYILNQEKIGFEDAALPVIARVAEGGMRDALSILDQVISYGDDMVTVANAMSVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETG------VEPLALMS------QLATVIT 694
++ E L+ D + +T + L+ I+ G VE L L S Q A +
Sbjct: 243 SLTQELLLSYFDAIVMNNTEKGLSILQSILAEGKDAARFVEDLILFSRDLLVYQQAPEML 302
Query: 695 DILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAAL 754
D+L + + D ++ ++ P + L + L+E + ++R SN +L A
Sbjct: 303 DLLEEA---SADNGFKELSQKIP-----AKTLYSVITILNETQGEMRFSNHPDIYLEVAT 354
Query: 755 LQL 757
+++
Sbjct: 355 VKM 357
>gi|392531426|ref|ZP_10278563.1| DNA polymerase III subunits gamma and tau [Carnobacterium
maltaromaticum ATCC 35586]
Length = 628
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 106/363 (29%), Positives = 189/363 (52%), Gaps = 21/363 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F+D+ GQ + Q L NA+++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRPQRFQDIAGQQAITQTLRNALIQGKSSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NCQ LE +PC C +C + G+ ++ E+ N E I D+ D + + Y++
Sbjct: 63 NCQFLEDGEPCNECETCKAITSGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTSADYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPKNVIFILATTEPHKIPLTIISRTQRFDFKRISVKD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
I + +I ++E I + AL +IA ++G +RDA L+Q+ G ++V + G
Sbjct: 183 ICARMVYILNQEKIGFEDAALPVIARVAEGGMRDALSILDQVISYGDDMVTVANAMSVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETG------VEPLALMS------QLATVIT 694
++ E L+ D + +T + L+ I+ G VE L L S Q A +
Sbjct: 243 SLTQELLLSYFDAIVMNNTEKGLSILQSILAEGKDAARFVEDLILFSRDLLVYQQAPEML 302
Query: 695 DILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAAL 754
D+L + + D ++ ++ P + L + L+E + ++R SN +L A
Sbjct: 303 DLLEEA---SADNGFKELSQKIP-----AKTLYSVITILNETQGEMRFSNHPDIYLEVAT 354
Query: 755 LQL 757
+++
Sbjct: 355 VKM 357
>gi|383480194|ref|YP_005389088.1| DNA polymerase III gamma and tau subunits DnaX [Streptococcus
pyogenes MGAS15252]
gi|383494111|ref|YP_005411787.1| DNA polymerase III gamma and tau subunits DnaX [Streptococcus
pyogenes MGAS1882]
gi|378928184|gb|AFC66390.1| DNA polymerase III gamma and tau subunits DnaX [Streptococcus
pyogenes MGAS15252]
gi|378929838|gb|AFC68255.1| DNA polymerase III gamma and tau subunits DnaX [Streptococcus
pyogenes MGAS1882]
Length = 556
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 157/292 (53%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L W+ KEGI + DAL LIA R++G +RDA L+Q LSL ++++ + +E+
Sbjct: 182 IREHLAWVLDKEGITYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + + L I ++G + L T + D+L
Sbjct: 242 GSISILALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLL 293
>gi|386362930|ref|YP_006072261.1| DNA polymerase III, subunits gamma and tau [Streptococcus pyogenes
Alab49]
gi|350277339|gb|AEQ24707.1| DNA polymerase III, subunits gamma and tau [Streptococcus pyogenes
Alab49]
Length = 556
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 157/292 (53%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L W+ KEGI + DAL LIA R++G +RDA L+Q LSL ++++ + +E+
Sbjct: 182 IREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + + L I ++G + L T + D+L
Sbjct: 242 GSISMLALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLL 293
>gi|94544199|gb|ABF34247.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes
MGAS10270]
Length = 556
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 157/292 (53%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L W+ KEGI + DAL LIA R++G +RDA L+Q LSL ++++ + +E+
Sbjct: 182 IREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + + L I ++G + L T + D+L
Sbjct: 242 GSISMLALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLL 293
>gi|50914432|ref|YP_060404.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
MGAS10394]
gi|209559603|ref|YP_002286075.1| DNA polymerase III subunits gamma/tau [Streptococcus pyogenes
NZ131]
gi|50903506|gb|AAT87221.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes
MGAS10394]
gi|209540804|gb|ACI61380.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
NZ131]
Length = 556
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 157/292 (53%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L W+ KEGI + DAL LIA R++G +RDA L+Q LSL ++++ + +E+
Sbjct: 182 IREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + + L I ++G + L T + D+L
Sbjct: 242 GSISILALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLL 293
>gi|418966839|ref|ZP_13518546.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis
SK616]
gi|383346284|gb|EID24344.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis
SK616]
Length = 551
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 103/337 (30%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALACLNLLFENGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L +E + E +R A +L++ + L+
Sbjct: 302 THHSPVFVENLALPQENLFEMIRLATVSLADIKSSLQ 338
>gi|254993826|ref|ZP_05276016.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes
FSL J2-064]
Length = 551
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/363 (28%), Positives = 181/363 (49%), Gaps = 38/363 (10%)
Query: 435 NAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRN 494
NA+++ K Y+F GP GTGKTS A+IFA+A+NC+ +PC C C G +
Sbjct: 2 NAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHDGEPCNECEICKGTTDGSIPD 61
Query: 495 IKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRR 554
+ E+ N E I D+ + + + ++Y++++ D+ LS +++A+ K ++ P+
Sbjct: 62 VLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKH 121
Query: 555 VVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASR 614
V+FIL ++ LP IISR Q+F F ++ DII L++I +E I D+ AL ++A
Sbjct: 122 VIFILATTEPHKLPLTIISRVQRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARA 181
Query: 615 SDGSLRDAEMTLEQLSLLG-QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLR 673
++G +RDA L+Q+ G + ++V E+ G ++ L L+ A D + L
Sbjct: 182 AEGGMRDALSLLDQVISYGSEEVTVEDALEITGSVAQNLLTKLVSAAFDGDAAEAISTLT 241
Query: 674 VIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEME--------- 724
++ G +P+ L+ L D+L +++ P +E +E
Sbjct: 242 ALLAEGKDPVRLVEDLLVFFRDVL--------------LYQKAPNLEETLERALIDDDFV 287
Query: 725 ---------KLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYV-----LPSSSA 770
K+ + +K L+ A++Q+R SN ++ AL+QL Q V +P+ +A
Sbjct: 288 ALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQAGQSVAGGGNVPADAA 347
Query: 771 DTS 773
S
Sbjct: 348 SGS 350
>gi|405983955|ref|ZP_11042260.1| DNA polymerase III, subunit gamma and tau [Slackia piriformis YIT
12062]
gi|404388770|gb|EJZ83852.1| DNA polymerase III, subunit gamma and tau [Slackia piriformis YIT
12062]
Length = 1031
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 156/291 (53%), Gaps = 2/291 (0%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
+ L +KY P+TF D+VGQ + + L NA+ KV Y+F GP GTGKT+ AR+ A+AL
Sbjct: 3 EALYRKYRPQTFEDVVGQTHIERTLKNAIESDKVSHAYLFCGPRGTGKTTTARLLAKALL 62
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP-SQYRI 527
C+ P P G C C++ G ++ E+ E++ + + V P +Y+I
Sbjct: 63 CEHGPTPSPDGTCEQCLAIAEGNHPDVNELDAASRTGVENVREEIIGRVQYAPTRGRYKI 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVF+L ++ +P I SRCQ+F F ++ + +
Sbjct: 123 YIIDEVHMLSTAAFNALLKTLEEPPSHVVFVLCTTDPQKVPETIHSRCQRFDFHRLSNDE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVG 646
I+ L + EG+E + DAL L A R+ G +RDA TLEQL + G ++++ + Q ++G
Sbjct: 183 IVSRLGAVCMAEGVEFEGDALDLAAHRAQGGMRDALTTLEQLIAFGGGKVTLEVAQSVLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
I + +++ + D L +ETG + LA I D+
Sbjct: 243 SIDATDISTVVNGIVKRDAAMCFTWLSEYVETGADLARFARDLAAYIRDLY 293
>gi|357636357|ref|ZP_09134232.1| DNA polymerase III, subunit gamma and tau [Streptococcus macacae
NCTC 11558]
gi|357584811|gb|EHJ52014.1| DNA polymerase III, subunit gamma and tau [Streptococcus macacae
NCTC 11558]
Length = 556
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 158/292 (54%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ + A L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQEIAATTLKQAVASGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPNQLDGEPCNNCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRANYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K A
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTAA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLG-QRISVPLVQELV 645
I L I KEGI D AL+LIA +++G +RDA L+Q LSL G +S+ + +E+
Sbjct: 182 ISQHLADILQKEGISFDDAALRLIAKQAEGGMRDALSILDQTLSLTGDHELSLEMAEEMT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS + L + L + + +L +I ++G + L + D+L
Sbjct: 242 GSISLKALDTYVSHLLKNEAQEALADLEMIFDSGKSMNRFAADLLNYLRDLL 293
>gi|291460808|ref|ZP_06600198.1| DNA polymerase III, gamma and tau subunit [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291416581|gb|EFE90300.1| DNA polymerase III, gamma and tau subunit [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 563
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 118/371 (31%), Positives = 188/371 (50%), Gaps = 17/371 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L +K+ R F +L GQ V +AL N V K+G Y+F G GTGKTS A+IFARA+
Sbjct: 2 YTALYRKWRSRDFGELKGQGAVTEALRNQVRSGKIGHAYLFCGTRGTGKTSAAKIFARAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ + PC C SC G S N+ E+ N E I + + + +YR+
Sbjct: 62 NCENPQDGNPCNLCRSCREILSGSSMNVLEMDAASNNGVEDIRKIREQVEYPPVSGRYRV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A K ++ P VVFIL ++ + LP I+SRCQ++ F ++
Sbjct: 122 YIIDEVHMLSAAAFNAFLKTLEEPPEYVVFILATTEPNRLPITILSRCQRYDFRRISSEV 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL--LGQRISVPLVQELV 645
I L IA EGI + +AL IA DGS+RDA L+Q S + I+ ++
Sbjct: 182 IAERLGEIAGAEGIPVSAEALSYIARVGDGSMRDAVSLLDQCSAFQFDREINYEDALGIL 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKN-LRVIMETGVEPLALMSQ---------LATVITD 695
G + +L+ ALSA + + + L ++E G E +S LA + D
Sbjct: 242 GAVDSSVFSELIR-ALSAREIRSALSLLSELIEQGRELSQFLSDFLYYVRNLLLAKTVED 300
Query: 696 ILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALL 755
L+G D +++ +R ++ S +E L + ++ LSE QLR S +K + L+
Sbjct: 301 -LSGLVDLSRENFQRLLEDKELFSTDE---LLRYIRRLSELINQLRYSPEKRVLIEIELI 356
Query: 756 QLAPDQQYVLP 766
+LA + + P
Sbjct: 357 KLAYPETDISP 367
>gi|256426033|ref|YP_003126686.1| DNA polymerase III subunits gamma and tau [Chitinophaga pinensis
DSM 2588]
gi|256040941|gb|ACU64485.1| DNA polymerase III, subunits gamma and tau [Chitinophaga pinensis
DSM 2588]
Length = 634
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 107/364 (29%), Positives = 185/364 (50%), Gaps = 20/364 (5%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
KY P+ F +VGQ+ + L NA+ ++ ++F GP G GKT+CARI A+ +NC++L
Sbjct: 10 KYRPQNFSTVVGQSHITTTLKNAIRNSQLAHAFLFCGPRGVGKTTCARILAKTINCENL- 68
Query: 474 QP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
QP + C C+SC S + G S NI E+ N + I L++ + + +Y+I++ D
Sbjct: 69 QPDGEACNQCHSCTSFNEGSSFNIHELDAASNNSVDDIRTLVEQVRFAPQAGKYKIYIID 128
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+ LS +++A K ++ P +FIL ++ + I+SRCQ F F ++ D +
Sbjct: 129 EVHMLSSSAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFKRITIQDTVDH 188
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVGLISD 650
LQ I SKE I+ + DAL L+A ++DG +RD+ TL+++ S G ++ E + ++
Sbjct: 189 LQEICSKEHIQAETDALHLVAQKTDGCMRDSLSTLDKIVSFTGGHLTYQNTLEHLNILDY 248
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT------ 704
+ ++D L D + I++ G E ++ A + ++L +
Sbjct: 249 DYFFRVMDTVLQQDVATALLIFDEILQKGFEGDNFLNGWAEFLRNLLMSKEEKVLHLVEV 308
Query: 705 ----KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760
KDR+++ + P L AL L+E E RM+ +K + AL++L
Sbjct: 309 SGNLKDRYKQMAGKVSP------SYLITALHLLNETEINYRMARNKRLHVEMALIKLCFL 362
Query: 761 QQYV 764
QQ V
Sbjct: 363 QQAV 366
>gi|421277483|ref|ZP_15728302.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis
SPAR10]
gi|395874735|gb|EJG85817.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis
SPAR10]
Length = 554
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 175/337 (51%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVARTLKQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I D+ D + +QY++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIRDIRDKSTYAPSIAQYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTPNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR--ISVPLVQELV 645
I + I KEGI+ + +A+++IA R++G +RDA L+Q L Q ++ + +E+
Sbjct: 182 IRDHIFQILEKEGIDYETEAVEIIARRAEGGMRDALSILDQALSLTQEATLTTAVSEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L + D ++NL +I E G + L + DIL
Sbjct: 242 GTISLSALDHYVAALAQKDVPGALQNLDLIFENGKSMTRFVVDLLQYLRDILIVQAGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F + L ++ + E + A K+L++ + L+
Sbjct: 302 THHSDAFEKNLALPQDVLFEMISLATKSLADIKASLQ 338
>gi|15675296|ref|NP_269470.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
SF370]
gi|71910925|ref|YP_282475.1| DNA polymerase III subunits gamma/tau [Streptococcus pyogenes
MGAS5005]
gi|410680779|ref|YP_006933181.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
A20]
gi|9789547|gb|AAF98348.1| DNA polymerase III gamma/tau subunits [Streptococcus pyogenes]
gi|13622473|gb|AAK34191.1| DNA polymerase III subunits gamma / tau [Streptococcus pyogenes M1
GAS]
gi|71853707|gb|AAZ51730.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes
MGAS5005]
gi|395454164|dbj|BAM30503.1| DNA polymerase III subunits gamma/tau [Streptococcus pyogenes M1
476]
gi|409693368|gb|AFV38228.1| DNA polymerase III, subunits gamma and tau [Streptococcus pyogenes
A20]
Length = 556
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 157/292 (53%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L W+ KEGI + DAL LIA R++G +RDA L+Q LSL ++++ + +E+
Sbjct: 182 IREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVAIAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + + L I ++G + L T + D+L
Sbjct: 242 GSISILALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLL 293
>gi|387928219|ref|ZP_10130897.1| DNA polymerase III subunits gamma and tau [Bacillus methanolicus
PB1]
gi|387587805|gb|EIJ80127.1| DNA polymerase III subunits gamma and tau [Bacillus methanolicus
PB1]
Length = 564
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 101/355 (28%), Positives = 192/355 (54%), Gaps = 5/355 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+TF D+VGQ V + L NA++++K+ Y+F GP GTGKTS A+I A+A+
Sbjct: 3 YQALYRVWRPQTFLDVVGQEHVTKTLQNALLQQKISHAYLFSGPRGTGKTSAAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C G ++ E+ N E I D+ D + + +Y++
Sbjct: 63 NCERAPVQEPCNECPACKGITDGSIPDVIEIDAASNNGVEEIRDIRDKVKYAPSAVKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F ++
Sbjct: 123 YIVDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRCQRFDFKRITAKA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ ++ IA + G++ ++ +L++IA ++G +RDA L+Q +S R++V + G
Sbjct: 183 IVNRMKLIAGQTGVDYEEGSLQVIARAAEGGMRDALSLLDQAISFSRDRVTVEDALTVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
+S L L D + ++ L ++ G +P+ + L D+L A S +
Sbjct: 243 SVSQGFLNKLARAIYEKDVASGLEALEELLFQGKDPVRFIEDLIHYYRDMLLYKAAPSLE 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ +R Q ++ E + + + TL++A++ +R +N +L A+++L
Sbjct: 303 ESLERVMIDEDFLQLANEMSSEIIYELIDTLNKAQQDMRWTNHPKIFLEVAIVKL 357
>gi|300814178|ref|ZP_07094461.1| DNA polymerase III, subunit gamma and tau [Peptoniphilus sp. oral
taxon 836 str. F0141]
gi|300511835|gb|EFK39052.1| DNA polymerase III, subunit gamma and tau [Peptoniphilus sp. oral
taxon 836 str. F0141]
Length = 577
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 165/293 (56%), Gaps = 5/293 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L +KY P F ++GQ+ + +L N + +V Y+F G GTGKTS A+IFARA+
Sbjct: 2 YKALYRKYRPLDFNQMIGQDALVMSLKNQIKNNEVSHAYLFSGTRGTGKTSAAKIFARAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QY 525
NC+ PC C SC+S+ S ++ E+ N + I DL D ++ PP+ +Y
Sbjct: 62 NCEHPIDGNPCNKCKSCLSNLNNTSVDVVEMDAASNNGVDDIRDLKDKVI--YPPTFLKY 119
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ LS +++A+ K+++ P ++FIL ++ + +P I+SR QKF F ++
Sbjct: 120 KVYIIDEVHMLSKGAFNALLKILEEPPSHLIFILATTEKEKIPATILSRTQKFEFSRVSL 179
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQEL 644
+II L++I+ EG +D + LIA SDG++RDA L+Q LS IS+ ++
Sbjct: 180 ENIIKRLKYISQMEGKTLDDEVYLLIAKTSDGAMRDALSVLDQLLSFDSDHISIEKAMDV 239
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+G+ S E L +L L+ D + + I G + L+L +QL + D++
Sbjct: 240 LGISSSESLFELTSAYLNKDAERAISVIDDIAIQGKDFLSLNNQLLKHMRDLM 292
>gi|323342245|ref|ZP_08082477.1| DNA polymerase III, gamma/tau subunit DnaX [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322463357|gb|EFY08551.1| DNA polymerase III, gamma/tau subunit DnaX [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 600
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 112/395 (28%), Positives = 204/395 (51%), Gaps = 19/395 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q+L +KY P ++VGQ V L N++ + K+ Y+F GP GTGKTS A++FARA+
Sbjct: 3 YQSLYRKYRPAHLDEVVGQEHVVNVLKNSITKNKISHAYLFCGPRGTGKTSIAKLFARAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ +Q CG C++C++ G ++ E+ N + I L++ + + +Y++
Sbjct: 63 NCENPDQV-ICGTCDNCLAVADGTHPDLIEIDAASNNGVDEIRGLIEKVKYTPILGKYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ + + IISRCQ++ F ++ + D
Sbjct: 122 YIIDEVHMLSQGAFNALLKTLEEPPSHVVFILATTEIHKVLPTIISRCQRYDFNRIGEVD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
I L ++ + E +E ++ KLIAS S G LR+A LEQ +L +I+V + + G
Sbjct: 182 IAKRLDYVLNNENVEAEQGVSKLIASLSGGGLRNALTILEQAIVLADDQITVNQIYDTNG 241
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY---DF 703
+I+D+ ++L D V + ++ E V LM L + + D + S+ D
Sbjct: 242 IITDQDKINLFDSIREQQMEALVNQIAMMNEKSVNIDRLMMDLVSGLKDSIIYSHTKSDA 301
Query: 704 TKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQY 763
+ + F + + E+L+ K LS +K ++ S ++ T+ A++ +
Sbjct: 302 LVNENSLMFIHYLAETLQVHERLKVIEKLLSYTDK-MKFSQNQSTYFEVAMVDVF----- 355
Query: 764 VLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAE 798
SFS+ ++L MT + RAE
Sbjct: 356 --------NSFSNKNVNLNQQTELTMTAEQIYRAE 382
>gi|153956411|ref|YP_001397176.1| DNA polymerase III subunits gamma and tau [Clostridium kluyveri DSM
555]
gi|219856723|ref|YP_002473845.1| hypothetical protein CKR_3380 [Clostridium kluyveri NBRC 12016]
gi|146349269|gb|EDK35805.1| DnaX [Clostridium kluyveri DSM 555]
gi|219570447|dbj|BAH08431.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 553
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 117/452 (25%), Positives = 227/452 (50%), Gaps = 34/452 (7%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L +++ P+ F D+VGQN + L N ++ +V Y+F G GTGKTS A+I A+A+
Sbjct: 3 YTTLYREWRPKNFSDVVGQNHITVTLKNQILNNRVAHAYLFCGTRGTGKTSMAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ--Y 525
NC ++Q +PC C C ++G S ++ E+ E I D+++N+ PP + Y
Sbjct: 63 NCLDIQQGEPCNECEMCKKINQGISMDVIEMDTASKRKLEDIKDVIENV--KYPPQEGKY 120
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ L+ ++ +A K ++ P V+FIL ++ LP I+SRCQKF F ++K
Sbjct: 121 KVYIMDEVHMLTQEAVNAFLKTLEEPPLNVIFILATTDPQKLPVTILSRCQKFDFRRIKS 180
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQEL 644
++I L+ I ++EGI D +L LI+ DG++RDA L+Q +S+ ++ + ++
Sbjct: 181 SEIFNRLRAIVNEEGIFADDRSLNLISRICDGAMRDALSVLDQAISMGSGKVEYNSIVDM 240
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD-- 702
+GL+++E L L D + + ++K + I+ +G + + ++ + ++L
Sbjct: 241 LGLVTNENLFHLTDSIIEKNVELSMKVIDDIVLSGKDIYNFIKEMIVHLRNLLMVKVSNN 300
Query: 703 ----FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ ++Q K +E++ + + +AE+Q + +L A++++
Sbjct: 301 PEEILDISEENIELLKKQA-QKIRVEEIMRHINIFQDAEEQSKWVKQSRIYLELAVIKMC 359
Query: 759 PDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNV-------- 810
+ +S + S LE A +G + E+ I +KE G+ +V
Sbjct: 360 K----IEYDTSKEIMLSRLN-KLEEAFKQGGMKIFHEK--IPSKELGISRDVIKKDNIIG 412
Query: 811 -------RLENFHAENSGDFIDGNMRKGISLD 835
R +N ++ + I+ NM I+LD
Sbjct: 413 EVNHHDNREKNLISKGTQSIIEENMYSKITLD 444
>gi|149182697|ref|ZP_01861164.1| DNA polymerase III (gamma and tau subunits) [Bacillus sp. SG-1]
gi|148849607|gb|EDL63790.1| DNA polymerase III (gamma and tau subunits) [Bacillus sp. SG-1]
Length = 565
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 189/355 (53%), Gaps = 5/355 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA++++K+ Y+F GP GTGKTS A+I A+A+
Sbjct: 3 YQALYRVWRPQQFIDVVGQQHVTKTLQNALLQQKISHAYLFSGPRGTGKTSAAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C+SC+ G ++ E+ N E I D+ D + + Y++
Sbjct: 63 NCERAPVAEPCNECDSCLGITDGSIPDVIEIDAASNNGVEEIRDIRDKVKYAPNVVSYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F ++ D
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRCQRFDFKRITARD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + IA + G++ ++ AL ++A ++G +RDA L+Q +S R++V + G
Sbjct: 183 IVGRMTHIADESGVQYEEKALHVVARAAEGGMRDALSLLDQAISFSQDRVTVDDALTVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
+S L L + ++ L ++ G +P L L D+L A + +
Sbjct: 243 AVSQVYLNRLAKAIFENQVADALQALEELLFQGKDPARLTEDLVLYFRDMLLHQTAPNLE 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ +R ++ + + + + + L+EA+++++ +N ++ ++++L
Sbjct: 303 ESLERVMLDEDFKELAERVSPQHIYKFIDILNEAQQEMKFTNHARIYIEVSIVKL 357
>gi|410656845|ref|YP_006909216.1| DNA polymerase III subunits gamma and tau [Dehalobacter sp. DCA]
gi|410659885|ref|YP_006912256.1| DNA polymerase III subunits gamma and tau, DnaX [Dehalobacter sp.
CF]
gi|409019200|gb|AFV01231.1| DNA polymerase III subunits gamma and tau [Dehalobacter sp. DCA]
gi|409022241|gb|AFV04271.1| DNA polymerase III subunits gamma and tau, DnaX [Dehalobacter sp.
CF]
Length = 558
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 159/279 (56%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P+ F ++VGQ V L+NA+ + KV Y+F GP GTGKTS A+I A+ALNC
Sbjct: 6 LYREWRPKKFSEMVGQEHVKITLTNALSQNKVAHAYMFSGPRGTGKTSAAKILAKALNCS 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ +PC C SC+ ++G + ++ E+ N + I DL + + + +Y++++
Sbjct: 66 DRDGAEPCSRCASCLDIEQGNAMDVLEIDAASNRGIDEIRDLREKVKLASSGGKYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+P++++A+ K ++ P VVF+L ++ +P I+SR Q+F F ++ I
Sbjct: 126 DEVHMLTPEAFNALLKTLEEPPVNVVFVLATTEAHKVPLTILSRVQRFEFHRISAEGIAM 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
LQ + G +I+ AL++IA++++G LRDA L+Q L I + + +++G++ +
Sbjct: 186 RLQEVCQALGRDIETKALRVIAAKAEGGLRDALSILDQCLLQDDPIRMEHIYQVIGMVGE 245
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689
DL D L+ D T+ L + G +P ++ +L
Sbjct: 246 TFSADLTDSLLNQDYALTLAKLGEGISLGRDPRQIIREL 284
>gi|308066974|ref|YP_003868579.1| DNA polymerase III subunit gamma/tau [Paenibacillus polymyxa E681]
gi|305856253|gb|ADM68041.1| DNA polymerase III subunit gamma/tau [Paenibacillus polymyxa E681]
Length = 583
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 153/291 (52%), Gaps = 1/291 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H L + + P+ F+D+VGQ + Q L NA+ + Y+F GP GTGKTS A+I A+A+
Sbjct: 3 HIALYRAWRPQAFKDMVGQQHIIQTLQNAIRENRTSHAYLFSGPRGTGKTSAAKILAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ P+PC C +C G +++E+ N E I DL D + + ++++
Sbjct: 63 NCEHGPAPEPCNECEACKRITAGAVMDVQEIDAASNRGVEEIRDLRDKVKYAPTEVRHKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+FIL ++ +P IISRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHRIPATIISRCQRFDFRRVSLEE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVG 646
L I +E I+ D DAL+ IA SDG +RDA L+Q+ S R++ V ++ G
Sbjct: 183 QTERLDLICRQENIQADSDALQYIARLSDGGMRDAVSVLDQISSFTDGRVTYQQVLDMTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
I+ E+ L L D ++ + M+ G M L D+L
Sbjct: 243 GIASEQFGKLALALLKEDVGTVLQMIENFMQEGKSADKCMENLLYYFRDLL 293
>gi|210616982|ref|ZP_03291317.1| hypothetical protein CLONEX_03539 [Clostridium nexile DSM 1787]
gi|210149505|gb|EEA80514.1| hypothetical protein CLONEX_03539 [Clostridium nexile DSM 1787]
Length = 519
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 107/361 (29%), Positives = 188/361 (52%), Gaps = 15/361 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L +K+ P F D+ GQ+ +++ L N + ++G Y+F G GTGKTS A+IFA+A+
Sbjct: 3 YTALYRKFRPGEFEDVKGQDHISKTLQNQIKADRIGHAYLFCGTRGTGKTSVAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ PCG C+SC + G S N+ E+ N ++I ++ + + +Y++
Sbjct: 63 NCEHPVNGSPCGVCDSCKAISSGTSMNVIEIDAASNNGVDNIREIREEVAYRPTEGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P I+SRCQ++ F ++
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQRYDFKRITIDT 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL--SLLGQRISVPLVQELV 645
I L + KE IE+++ A++ +A +DGS+RDA L+Q LGQ+++ V E++
Sbjct: 183 IAARLADLMQKENIEVEEKAIRYVAKAADGSMRDALSILDQCIAFYLGQKLTYDNVLEVL 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVIT-----DILAGS 700
G + E LL L + +K+L ++ G E +SQLA T +LA S
Sbjct: 243 GAVDTEVFSRLLRELLERNVAKVMKSLDELVMQGRE----LSQLAADFTWYLRNLLLAKS 298
Query: 701 YDFTKDRHRRKFFRRQPLSKE----EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
D +D L +E E + L + ++ SE QL+ + K + A ++
Sbjct: 299 SDNMEDVLDVSTENLAQLKEEAQMIENDTLIRYIRIFSELSNQLKYATQKRVMMEVAFIK 358
Query: 757 L 757
L
Sbjct: 359 L 359
>gi|288928509|ref|ZP_06422356.1| DNA polymerase III, gamma and tau subunit [Prevotella sp. oral
taxon 317 str. F0108]
gi|288331343|gb|EFC69927.1| DNA polymerase III, gamma and tau subunit [Prevotella sp. oral
taxon 317 str. F0108]
Length = 608
Score = 169 bits (429), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 188/356 (52%), Gaps = 14/356 (3%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS- 471
+KY P +F +VGQ+ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC +
Sbjct: 9 RKYRPVSFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCLTP 68
Query: 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFV 529
E + C C SC + + +S NI E+ N E+I L+D T PP +Y++F+
Sbjct: 69 TEMGEACNHCESCQAFNDQRSYNIFELDAASNNSVENIKTLMDQ--TRIPPQVGKYKVFI 126
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M II
Sbjct: 127 IDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPGII 186
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLI 648
L+ +A EGI +++AL +IA ++DG +RDA +Q + Q ++ V + ++
Sbjct: 187 DHLKRVAENEGIAYEEEALAVIAEKADGGMRDALSIFDQAASFAQGNLTYDSVIADLNVL 246
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT---- 704
+ ++DLA+ + + + I+ G + L++ LAT + ++L + T
Sbjct: 247 DSDNYFSIIDLAVQNKVSDIMVLVNDIIAKGFDAGNLVNGLATHVRNVLMAKDESTLPLL 306
Query: 705 --KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R R +F ++ K + L +AL+ +++ + R S++K L+Q+A
Sbjct: 307 EVSARQRERF--KEQAQKCPTKFLYKALQVMNQCDIHYRASSNKRLLAELTLIQVA 360
>gi|452944508|ref|YP_007500673.1| DNA polymerase III, subunits gamma and tau [Hydrogenobaculum sp.
HO]
gi|452882926|gb|AGG15630.1| DNA polymerase III, subunits gamma and tau [Hydrogenobaculum sp.
HO]
Length = 379
Score = 169 bits (429), Expect = 7e-39, Method: Composition-based stats.
Identities = 89/306 (29%), Positives = 166/306 (54%), Gaps = 4/306 (1%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
+KY P+TF++L+GQ + A L NA + +K+ Y+F G GTGKT+ ARIFA+ LNC
Sbjct: 6 FARKYRPKTFKELIGQEIPATILKNAFLYQKIHHAYIFAGHKGTGKTTTARIFAKVLNCL 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ ++ +PC C +C + ++G ++ E+ N + I + + +Y++++
Sbjct: 66 NPQEGEPCNACPNCQAIEKGTFVDLIEMDAASNRGIDEIRAVKEGASYLPMQGKYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P ++FIL ++ D + I SRCQK F + +I
Sbjct: 126 DEAHMLTKEAFNALLKTIEEPPPSLIFILCTTEFDKILPTIQSRCQKLVFSRASKENIKT 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVGLIS 649
L+ IA++E IEID++AL +++ +D S+RDA L+Q S G ++++ +V+ + G +
Sbjct: 186 YLRRIATQENIEIDEEALDVLSDLADDSMRDAASLLDQASTYGNNKVTIDIVKSMFGPVD 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR 709
+ L+L + +DT + L I E G + I +IL F
Sbjct: 246 KASIRKFLELLIESDTKEAINMLNTINEKGYNVRLFWEGVYKEIKNILKA---FATGEAE 302
Query: 710 RKFFRR 715
+F+++
Sbjct: 303 EEFYKK 308
>gi|418977525|ref|ZP_13525341.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis
SK575]
gi|383349712|gb|EID27634.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis
SK575]
Length = 551
Score = 169 bits (429), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVTKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L +E + E +R A +L++ + L+
Sbjct: 302 THHSPVFVENLALPQENLFEMIRLATVSLADIKSSLQ 338
>gi|289167756|ref|YP_003446025.1| DNA polymerase III, gamma/tau subunits [Streptococcus mitis B6]
gi|288907323|emb|CBJ22160.1| DNA polymerase III, gamma/tau subunits [Streptococcus mitis B6]
Length = 551
Score = 169 bits (429), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVTKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L +E + E +R A +L++ + L+
Sbjct: 302 THHSPVFVENLALPQENLFEMIRLATVSLADIKSSLQ 338
>gi|253996278|ref|YP_003048342.1| DNA polymerase III subunits gamma and tau [Methylotenera mobilis
JLW8]
gi|253982957|gb|ACT47815.1| DNA polymerase III, subunits gamma and tau [Methylotenera mobilis
JLW8]
Length = 564
Score = 169 bits (429), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 162/290 (55%), Gaps = 1/290 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P++F LVGQ+ V +AL+NA+ + ++ Y+F G G GKT+ ARI A++L
Sbjct: 3 YQVLARKWRPKSFETLVGQDHVVRALTNALEQNRLHHAYLFTGTRGVGKTTLARILAKSL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ KPCG CN+C D+G+ ++ EV N +++ DLLDN + ++++
Sbjct: 63 NCETGITAKPCGVCNACTEIDKGRFVDLIEVDAASNTQVDAMRDLLDNAQYAPTAGRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V FIL ++ +P ++SRC +F +M
Sbjct: 123 YIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSRCLQFNLRQMAGTS 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA-EMTLEQLSLLGQRISVPLVQELVG 646
I LQ I ++E I + AL LI+ + GS+RDA +T + ++ GQ + V+ ++G
Sbjct: 183 ITSHLQNILTQENIAFEPTALHLISRAAAGSMRDALSLTDQAIAYGGQTVHESEVRAMLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDI 696
I L LLD L D + + + + E + A + LA ++ I
Sbjct: 243 AIDQSYLYQLLDALLVNDGNSLINQAKAMEERSISFDAAFNDLAQLLHQI 292
>gi|386038828|ref|YP_005957782.1| DNA polymerase III subunits gamma/tau [Paenibacillus polymyxa M1]
gi|343094866|emb|CCC83075.1| DNA polymerase III, gamma and tau subunit [Paenibacillus polymyxa
M1]
Length = 583
Score = 169 bits (429), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 156/292 (53%), Gaps = 3/292 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H L + + P+ F+D+VGQ + Q L NA+ + Y+F GP GTGKTS A+I A+A+
Sbjct: 3 HIALYRAWRPQAFKDMVGQQHIIQTLQNAIRENRTSHAYLFSGPRGTGKTSAAKILAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ P+PC C +C G +++E+ N E I DL D + + ++++
Sbjct: 63 NCEHGPAPEPCNECEACKRITAGAVMDVQEIDAASNRGVEEIRDLRDKVKYAPTEVRHKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+FIL ++ +P IISRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHRIPATIISRCQRFDFRRVSLEE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVG 646
L I +E I+ D DAL+ IA SDG +RDA L+Q+ S R++ V ++ G
Sbjct: 183 QTERLDLICQQENIQADLDALQYIARLSDGGMRDAVSVLDQISSFTDGRVTYQQVLDMTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNL-RVIMETGVEPLALMSQLATVITDIL 697
I+ E+ L LAL + V TV L M+ G M L D+L
Sbjct: 243 GIASEQFGKLA-LALLKEDVGTVLQLIENFMQEGKSADKCMENLLYYFRDLL 293
>gi|197116612|ref|YP_002137039.1| DNA polymerase III subunits gamma/tau [Geobacter bemidjiensis Bem]
gi|197085972|gb|ACH37243.1| DNA polymerase III, gamma and tau subunits [Geobacter bemidjiensis
Bem]
Length = 582
Score = 169 bits (429), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 148/246 (60%), Gaps = 1/246 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P+TF DLVGQ V+Q L NA+ +V ++F G G GKTS ARI A+ALNC+
Sbjct: 6 LARKWRPQTFSDLVGQEHVSQTLKNAIDGGRVAHAFLFTGARGVGKTSSARILAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
S +PC C++C+ G S ++ E+ N + I +L DN+ S+Y+IF+
Sbjct: 66 SGLTVEPCNTCSTCLEITEGNSVDVFEIDGASNTGVDDIRELRDNIKYLPSRSRYKIFII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P V FI ++ +P I+SRCQ+F F ++ I+
Sbjct: 126 DEVHMLTTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFKRIALPRIVS 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLIS 649
L++I +EG+++ +AL ++A + DGS+RD+ TL+Q L+ G +++ V L+G++
Sbjct: 186 RLRYIVDQEGVQVSDEALAVVARKGDGSMRDSLSTLDQVLAFCGNQVADADVAALLGVVD 245
Query: 650 DEKLVD 655
++D
Sbjct: 246 RRLIMD 251
>gi|429204762|ref|ZP_19196045.1| DNA polymerase III subunits gamma and tau [Lactobacillus saerimneri
30a]
gi|428146985|gb|EKW99218.1| DNA polymerase III subunits gamma and tau [Lactobacillus saerimneri
30a]
Length = 580
Score = 169 bits (429), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 168/291 (57%), Gaps = 1/291 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F DLVGQ L+ + L NA++ ++ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRPQRFADLVGQELITKTLRNALVTKQTSHAYLFCGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C +C + G+ ++ E+ N E I D+ D + + + Y++
Sbjct: 63 NCHQQKDGEPCNECETCRAITAGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTQADYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR Q+F F ++ A
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQRFDFKRITLAA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
+++ +++I ++ I+ D+ AL++IA ++G +RDA L+Q+ G+ +++ + G
Sbjct: 183 LLHRMEYILQQKEIKYDQQALQVIAKAAEGGMRDALSILDQVLSFGENEVTLDNALLVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
++ ++L + L L+ DT + ++ +++ G +P L+ L D+L
Sbjct: 243 SVTRQELHNYLAQVLNHDTAAALITIQKLLQDGKDPSRLIEDLIMYCRDLL 293
>gi|325111245|ref|YP_004272313.1| DNA polymerase III subunits gamma and tau [Planctomyces
brasiliensis DSM 5305]
gi|324971513|gb|ADY62291.1| DNA polymerase III, subunits gamma and tau [Planctomyces
brasiliensis DSM 5305]
Length = 593
Score = 169 bits (428), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 180/346 (52%), Gaps = 14/346 (4%)
Query: 405 NGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFA 464
G + L ++Y P+TF +VGQ VAQAL NA+ +V Y+F G G GKTS ARI A
Sbjct: 5 TGTYTVLARRYRPQTFDAVVGQQHVAQALRNAIRAERVAHAYLFTGARGVGKTSMARILA 64
Query: 465 RALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ 524
+ALNC + + PC C C + G ++ E+ N + I L N+ ++
Sbjct: 65 KALNCTNSQDGNPCNQCELCQAISTGSDVDVMEIDGASNRGIDDIRSLRANVGIRSMRTR 124
Query: 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMK 584
++++ D+ L+ ++++A+ K ++ P V F+ ++ +P I+SRCQ+F F ++
Sbjct: 125 VKMYIIDEVHMLTKEAFNALLKTLEEPPPNVKFVFCTTEPHKVPDTILSRCQRFDFSSIE 184
Query: 585 DADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQE 643
I L IA+ EGIE+ +A+ L+A R+ GS+RD++ +Q L+ G RI V +
Sbjct: 185 TQKISERLAEIAASEGIEVAPEAVDLVARRAGGSMRDSQSLFDQLLAFGGARIEAADVNQ 244
Query: 644 LVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDF 703
L+G D++L++L++ A S + + + GV+ L+ QL D++
Sbjct: 245 LLGTAGDQRLLNLIESAHSGQQADLLAEVDQASREGVQLGNLLDQLVNCYRDMMV----L 300
Query: 704 TKDRHRRKFFRRQPLSKEEMEKLRQ---------ALKTLSEAEKQL 740
+ + P +KE ++++ Q A++ LSEA+ +L
Sbjct: 301 SCGADSLELIGVGPGAKESLQQIGQRIGLQTVMAAMQILSEAKSKL 346
>gi|417847929|ref|ZP_12493887.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis
SK1073]
gi|339455829|gb|EGP68427.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis
SK1073]
Length = 551
Score = 169 bits (428), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 103/337 (30%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVARTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALACLNLLFENGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L +E + E +R A +L++ + L+
Sbjct: 302 THHSPVFVENLALPQENLFEMIRLATVSLADIKSSLQ 338
>gi|260912516|ref|ZP_05919050.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella sp. oral
taxon 472 str. F0295]
gi|260633365|gb|EEX51521.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella sp. oral
taxon 472 str. F0295]
Length = 608
Score = 169 bits (428), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 190/356 (53%), Gaps = 14/356 (3%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS- 471
+KY P +F +VGQ+ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC +
Sbjct: 9 RKYRPVSFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCLTP 68
Query: 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFV 529
E + C C SC + + +S NI E+ N E+I L+D T PP +Y++F+
Sbjct: 69 TETGEACNHCESCQAFNDQRSYNIFELDAASNNSVENIKTLMDQ--TRIPPQVGKYKVFI 126
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M II
Sbjct: 127 IDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPGII 186
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLI 648
L+ +A EG+ +++AL +IA ++DG +RDA +Q + Q ++ V + ++
Sbjct: 187 DHLKRVAENEGVAYEEEALAVIAEKADGGMRDALSIFDQAASFAQGNLTYDSVIADLNVL 246
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT---- 704
+ ++++LAL + + + I+ G + L++ LAT + ++L + T
Sbjct: 247 DSDNYFNIINLALENKVSDIMVLVNDIIVKGFDAGNLVNGLATHVRNVLMAKDESTLPLL 306
Query: 705 --KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R R +F ++ K + L +AL+ +++ + R S++K + L+Q+A
Sbjct: 307 EVSARQRERF--KEQAQKCPTKFLYKALQVMNQCDIHYRASSNKRLLVELTLIQVA 360
>gi|449991663|ref|ZP_21821984.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NVAB]
gi|449180770|gb|EMB82908.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NVAB]
Length = 558
Score = 169 bits (428), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 166/320 (51%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQIFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|189912832|ref|YP_001964387.1| DNA polymerase III subunit gamma and tau [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167777508|gb|ABZ95809.1| DNA polymerase III, gamma and tau subunits [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
Length = 492
Score = 169 bits (428), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 153/271 (56%), Gaps = 7/271 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
HQ L +KY P+ FRD++ Q+L +L NA +K+G Y+F GP G GKT+ ARI A+ L
Sbjct: 5 HQVLFRKYRPQFFRDVIYQDLAVGSLQNAFKSKKIGHAYIFIGPRGVGKTTIARILAKRL 64
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C SC+ +G S ++ E+ N ++I +L +N+ + +YR+
Sbjct: 65 NCERPDGVEPCNECTSCLEITKGNSNDVFEIDAASNSGVDNIRELRENVKFNAMGGKYRV 124
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ +P I+SRCQ F F K+
Sbjct: 125 YILDEVHMLSGAAFNALLKTLEEPPAHVVFILATTEYHKIPETILSRCQDFHFRKVPVTV 184
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRISVPLVQELV 645
+ ++ + +KEG++ D + L IA + DGS+RD +EQ + G V L ++++
Sbjct: 185 LQNYIETLCTKEGLKYDSEGLFWIAKKGDGSVRDTLSFMEQAVIFTDGNLTGVKL-RKMI 243
Query: 646 GLISDEKLVD----LLDLALSADTVNTVKNL 672
G + D L+D + SA T++NL
Sbjct: 244 GYHGIDTFTDFLNQLIDTSQSAQIFETLENL 274
>gi|345862373|ref|ZP_08814597.1| DNA polymerase III, subunits gamma and tau [Desulfosporosinus sp.
OT]
gi|344324514|gb|EGW36068.1| DNA polymerase III, subunits gamma and tau [Desulfosporosinus sp.
OT]
Length = 557
Score = 169 bits (428), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 165/287 (57%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ PR F+D+VGQ + + L NA+ + K+ Y+F GP GTGKT+ A+I A+ALNC+
Sbjct: 6 LYREWRPRKFKDIVGQEHITKTLVNALKQEKIAHAYLFSGPRGTGKTTAAKILAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ +PC C SC+S D G + + E+ N + I DL +N+ S ++++++
Sbjct: 66 ERDGEEPCNHCASCLSIDHGSAMEVFEIDAASNRGIDEIRDLRENVKLSAIQGKHKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P +VVFIL ++ + +P I+SR Q+F F ++ +I
Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPAQVVFILATTEVQKIPLTILSRVQRFEFHRISVENIQK 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
L + + +++ AL +IA +S+G LRDA L+Q L I V V +++G++ +
Sbjct: 186 RLLQVCTYLNRQVNPSALVVIAQKSEGGLRDALSILDQCLLQNDPIGVEEVYQVLGMVGE 245
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
L++ +++D ++ L ++ G +P ++ +L + +L
Sbjct: 246 TFSAQLVEALITSDYAKSLNFLTEGIQQGRDPRQIIRELLDYLRQML 292
>gi|417924765|ref|ZP_12568196.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis
SK569]
gi|342835410|gb|EGU69653.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis
SK569]
Length = 551
Score = 169 bits (428), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALACLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L +E + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQENLFEMIRLATASLADIKSSLQ 338
>gi|160914821|ref|ZP_02077035.1| hypothetical protein EUBDOL_00829 [Eubacterium dolichum DSM 3991]
gi|158433361|gb|EDP11650.1| DNA polymerase III, subunit gamma and tau [Eubacterium dolichum DSM
3991]
Length = 593
Score = 169 bits (428), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 172/305 (56%), Gaps = 8/305 (2%)
Query: 405 NGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFA 464
N ++ L + Y P +F ++ GQ + + L NAV + K+ Y+F GP GTGKTS A+IFA
Sbjct: 6 NMGYKALYRTYRPNSFDEVAGQKHIVKTLQNAVEQNKIAHAYLFCGPRGTGKTSIAKIFA 65
Query: 465 RALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ 524
+ +NC+S E KPC C++C++ G +I E+ N E + +L++ + + +
Sbjct: 66 KVINCESKEH-KPCLQCDNCLAVQNGSHPDIIEIDAASNNGVEEVRNLIEKVKYAPLKGK 124
Query: 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMK 584
Y++++ D+ +S +++A+ K ++ P V+FIL ++ + IISRCQ+F F K+
Sbjct: 125 YKVYIIDEVHMMSAGAFNALLKTIEEPPEHVIFILATTEPHKVLPTIISRCQRFDFTKVP 184
Query: 585 DADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQE 643
+I+ + I KE IE D D ++LIA +DG LRDA L+Q ++ I + + E
Sbjct: 185 KNEIVSRIHTILEKEHIECDDDVIELIAQLADGGLRDALSILDQCIAYATNHIELQHINE 244
Query: 644 LVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS--Y 701
+ G+ + ++ + L + + V+ + L ++E G++ + +L + ++L S +
Sbjct: 245 IYGITTVQEKMKLFHHIFNNEPVDLMDMLDGMLEKGLD----IPRLTVDLIELLKESIIF 300
Query: 702 DFTKD 706
++TKD
Sbjct: 301 EYTKD 305
>gi|255527108|ref|ZP_05393996.1| DNA polymerase III, subunits gamma and tau [Clostridium
carboxidivorans P7]
gi|296187897|ref|ZP_06856290.1| DNA polymerase III, subunit gamma and tau [Clostridium
carboxidivorans P7]
gi|255509210|gb|EET85562.1| DNA polymerase III, subunits gamma and tau [Clostridium
carboxidivorans P7]
gi|296047518|gb|EFG86959.1| DNA polymerase III, subunit gamma and tau [Clostridium
carboxidivorans P7]
Length = 541
Score = 169 bits (428), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 191/359 (53%), Gaps = 12/359 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L +++ PR F D+VGQ + L N + ++ Y+F G GTGKTS A+I A+A+
Sbjct: 3 YTALYREWRPRIFDDVVGQKHITVTLKNQIRNNRIAHAYLFSGTRGTGKTSTAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ--Y 525
NC L +PC C+ C + G S ++ E+ E I D+++N+ PP + Y
Sbjct: 63 NCTDLRDGEPCNECDMCKKINSGISIDVIEMDAASKRRLEDIKDVIENV--KYPPQEGKY 120
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ L+ ++ +A K ++ P V+FIL ++ LP I+SRCQKF F ++K
Sbjct: 121 KVYIMDEVHMLTAEAVNAFLKTLEEPPSNVIFILATTDPQKLPVTILSRCQKFDFRRIKS 180
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQEL 644
+DI ++ I ++GI D +L LIA SDG++RDA L+Q +S+ G ++ V +
Sbjct: 181 SDIFGRMRDIVKEQGIFADDRSLNLIARMSDGAMRDALSILDQAISMGGGKVEYESVVSM 240
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYD-- 702
+GL+++E ++ L D + + ++K + I+ +G + + + T + ++L
Sbjct: 241 LGLVTNENMIKLADSIIDKNVEESMKVIDDIVLSGKDIYNFIRDMITHLRNLLMVKVSKE 300
Query: 703 ----FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ + Q K + E++ + ++ L +AE+Q + + +L A++++
Sbjct: 301 PEEILDMSEENIELLKEQS-KKTKSEEIMRNIRILQDAEEQSKWTKQSRIYLELAVIKM 358
>gi|430751652|ref|YP_007214560.1| DNA polymerase III subunits gamma and tau [Thermobacillus composti
KWC4]
gi|430735617|gb|AGA59562.1| DNA polymerase III, subunit gamma/tau [Thermobacillus composti
KWC4]
Length = 604
Score = 169 bits (428), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 104/355 (29%), Positives = 177/355 (49%), Gaps = 5/355 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H L + + P+TF+D+VGQ+ V Q L NA+ ++ Y+F GP GTGKTS A+I A+A+
Sbjct: 3 HIALYRAWRPQTFQDMVGQHHVIQTLQNAIRENRIAHAYLFNGPRGTGKTSAAKIMAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ P PC C +C G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHGPTPDPCNACAACEGIAAGTVLDVIEIDAASNRGIDEIRDIRDKVRYAPTEVRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+FIL ++ LP I+SRCQ+F F + +
Sbjct: 123 YIIDEVHMLTSEAFNALLKTLEEPPGHVIFILATTEPHKLPATIVSRCQRFDFRPVPLEE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
+ L+ I +EGIE + DAL IA S+G +RDA LEQ + RI++ ++ G
Sbjct: 183 QVGRLRRICEEEGIEAEDDALAYIARLSEGGMRDAIGLLEQTAAFTDGRITLDGAVDVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD--ILAGSYDFT 704
I E+ +L + D ++ + G M L D +L + D T
Sbjct: 243 GIPAERFEELAEAVRGRDAAAVMRVTEALTAAGKSADKCMEDLIVFFRDLLLLKLAPDRT 302
Query: 705 KDRHRRKFFRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
R R + E E+L + + L+ + ++R + T ALL++
Sbjct: 303 AATERIVDVERFRNAGEGFTAERLFRMIDILNRYQNEMRFAAQPQTMFEVALLKI 357
>gi|450119857|ref|ZP_21865316.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
ST6]
gi|449230855|gb|EMC30097.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
ST6]
Length = 558
Score = 169 bits (428), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 165/320 (51%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F ++VGQ +VA+ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQIFDEMVGQEVVAKTLKQAVASEKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL IS+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDISLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|169825458|ref|YP_001695633.1| DNA polymerase III subunit gamma/tau [Lysinibacillus sphaericus
C3-41]
gi|168994735|gb|ACA42274.1| DNA polymerase III subunit gamma/tau [Lysinibacillus sphaericus
C3-41]
Length = 636
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 184/356 (51%), Gaps = 10/356 (2%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+ F +L+GQN V L N++ KV Y+F GP GTGKTS A+IFA+ LNCQ
Sbjct: 8 LYRKYRPQGFDNLIGQNHVKNTLENSIKHNKVAHAYLFTGPRGTGKTSAAKIFAKLLNCQ 67
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
S PCG C C + + +I E+ N + I DL + + + + ++++
Sbjct: 68 SPIDYNPCGECVCC----QDSNTDIIEMDAASNNGVDDIRDLREKVNYAPAFGKKKVYII 123
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A+ K ++ P +VFIL ++ +P I+SRCQ++ F ++ DI++
Sbjct: 124 DEVHMLSTAAFNALLKTLEEPPAHIVFILATTEPHKIPATILSRCQRYDFRRISQDDIVH 183
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLIS 649
++ I E +EI++ AL+LI+ + G +RDA L+Q +S + ++++ + E+ G +
Sbjct: 184 RMKTIVEAESVEIEEQALRLISQIAAGGMRDALSLLDQAISKVEGKVTLQDIIEITGAVD 243
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA----GSYDFTK 705
K+ L+ ++ +++ E+G EP + ++ + DIL G K
Sbjct: 244 TRKIGTLIQYINQSNIEGALEHFNTCFESGQEPHFFLEEMMIYLRDILVNRKLGEKATLK 303
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQ 761
H F S +K+ + L++A ++ ND + ++++ +Q
Sbjct: 304 KGHNDPQFYEIANSVGP-DKIYDYMDLLNKAHSNMKFHNDVQLLMEMTIIEMINNQ 358
>gi|450050343|ref|ZP_21840211.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NFSM1]
gi|449202696|gb|EMC03593.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NFSM1]
Length = 558
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 166/320 (51%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F ++VGQ +VA+ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQVLYRKYRSQIFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|261404007|ref|YP_003240248.1| DNA polymerase III subunits gamma and tau [Paenibacillus sp.
Y412MC10]
gi|261280470|gb|ACX62441.1| DNA polymerase III, subunits gamma and tau [Paenibacillus sp.
Y412MC10]
Length = 571
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/380 (28%), Positives = 189/380 (49%), Gaps = 14/380 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H L + + P++F D+VGQ + Q L NA+ ++V Y+F GP GTGKTS A+I A+A+
Sbjct: 3 HIALYRAWRPQSFGDMVGQQHIIQTLQNAIREQRVSHAYLFSGPRGTGKTSAAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C G +++E+ N E I DL + + + + ++
Sbjct: 63 NCEHGPAEEPCNACEACRRITSGAVMDVQEIDAASNRGVEEIRDLREKVKYAPTEVRRKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+FIL ++ LP IISRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPAHVMFILATTEPHRLPATIISRCQRFDFRRVSLEE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVG 646
L+ I +EGI + +AL+ IA SDG +RDA L+Q+ S G +S V ++ G
Sbjct: 183 QTGRLEQICGEEGITAEHEALQYIARLSDGGMRDALSILDQIASFTGGTVSYRQVMDMTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
I+ E+ L D ++ + M+ G M L D+L D
Sbjct: 243 GIASEQFGRLAGAVKQGDAGLVLQIVEQFMQEGKSADKCMENLLYYFRDLLMIKMVPDAD 302
Query: 707 RHRRKFFRRQPLSKEEM------EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760
+ + P +EM ++L Q + TL+ + +++ ++ T ALL+L+
Sbjct: 303 KLTDRVLN--PAEFQEMANAFSRDELFQMIDTLNRYQSEMKYASQPQTLFEVALLKLSGI 360
Query: 761 QQYVLPSSSADTSFSHSPLD 780
Q S ++ +HS D
Sbjct: 361 TQ-----SGGGSAAAHSTAD 375
>gi|374587638|ref|ZP_09660730.1| DNA polymerase III, tau subunit [Leptonema illini DSM 21528]
gi|373876499|gb|EHQ08493.1| DNA polymerase III, tau subunit [Leptonema illini DSM 21528]
Length = 493
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 152/265 (57%), Gaps = 7/265 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
HQ L +KY P+ F ++V Q+ AL NA+ +VG Y+F+GP G GKT+ ARI A+ +
Sbjct: 5 HQVLARKYRPQLFSEVVEQHTAVHALENAIRENRVGSAYLFFGPRGVGKTTIARILAKRI 64
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP-SQYR 526
NC++ + +PC C SC+S +G S ++ E+ N + I DL + V RP +
Sbjct: 65 NCENPKDAEPCDACESCLSIQKGYSMDVIEIDAASNRKIDDIRDLREK-VKFRPIRGTKK 123
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+++ D+ L+ ++++A+ K ++ P VVF+L ++ L+ +P I+SRCQ F F K+
Sbjct: 124 VYIIDEVHMLTTEAFNALLKTLEEPPDHVVFVLATTELNKIPETILSRCQVFTFRKVPVT 183
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELV 645
+ L I +E I ++DAL LIA + DGS+RD+ LEQ +S + I+ ++EL
Sbjct: 184 RLTRHLAEICRRENIAAEEDALFLIARKGDGSVRDSLSFLEQAVSFCDRNITSERIRELT 243
Query: 646 GLISDEKLVD----LLDLALSADTV 666
G + E + LLD A+ D +
Sbjct: 244 GSFTIETFLQITSSLLDPAVGPDAL 268
>gi|291532777|emb|CBL05890.1| DNA polymerase III, subunits gamma and tau [Megamonas hypermegale
ART12/1]
Length = 334
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 160/284 (56%), Gaps = 1/284 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L +K+ P+ F DL+GQ +++ LSNA+ KV Y+F GP GTGKTS A+I A+AL
Sbjct: 3 YMALYRKWRPQDFSDLIGQEHISETLSNAISTGKVAHAYLFSGPRGTGKTSTAKILAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ P PC C C + G ++ E+ N + I DL + + + +Y++
Sbjct: 63 NCEHGPTPTPCNQCVCCQKINDGSFMDVFEIDAASNRGIDEIRDLRETVKFAPVDGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P VVFIL ++ + +P I SRCQ++ F ++ D
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPSHVVFILATTEVHKVPITIQSRCQRYDFKRITKDD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L I + G+ DKDAL +IA ++DG +RDA L+Q L+ ++V V++++G
Sbjct: 183 ILKRLVMITDEMGLNADKDALSIIAIQADGGMRDALSLLDQCLAFTKDELTVTQVRKVLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLA 690
L+ + + + D D+ + L ++ G E L+++L
Sbjct: 243 LVGHDWVWQITDALAKKDSQTILTILDEVIAQGKEIKQLLNELV 286
>gi|419766028|ref|ZP_14292248.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis
SK579]
gi|383354580|gb|EID32140.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis
SK579]
Length = 551
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/337 (30%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKIQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILDKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALACLNLLFENGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L +E + E +R A +L++ + L+
Sbjct: 302 THHSPVFVENLALPQENLFEMIRLATVSLADIKSSLQ 338
>gi|426405587|ref|YP_007024558.1| DNA polymerase III subunits gamma and tau [Bdellovibrio
bacteriovorus str. Tiberius]
gi|425862255|gb|AFY03291.1| DNA polymerase III gamma and tau subunits [Bdellovibrio
bacteriovorus str. Tiberius]
Length = 612
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 161/291 (55%), Gaps = 1/291 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q + +K+ P++F D+VGQN + Q LSNA+ ++ +F GP GTGKTS ARI A+AL
Sbjct: 3 YQVIARKWRPQSFTDVVGQNHITQTLSNALKNGRLPHALLFTGPRGTGKTSSARILAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
C + + PC C SC G S ++ E+ N ++I +L D + +Y+I
Sbjct: 63 RCPNAQNFVPCNDCYSCNEIAGGSSIDVIEIDGASNNGVDAIRELRDTVAFMPSSGKYKI 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFI+ ++ + +P I+SRCQ+F F ++
Sbjct: 123 YIIDEVHMLSTSAFNALLKTLEEPPSHVVFIMATTEVHKIPQTILSRCQRFDFRRISTRS 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I LQ I +EG+ D +AL ++A + DGS+RD++ L+Q ++ ++ V E++G
Sbjct: 183 ITERLQLICDREGVTADDEALWVVARQGDGSMRDSQSLLDQVITFANGPLTRASVVEILG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
L L + L+ + ++ +K + I G EP L +I ++L
Sbjct: 243 LTDRALLFETLNALIDRNSQAILKVIEKIAAAGFEPHLYSQDLLEMIRNLL 293
>gi|386348003|ref|YP_006046252.1| DNA polymerase III subunits gamma and tau [Spirochaeta thermophila
DSM 6578]
gi|339412970|gb|AEJ62535.1| DNA polymerase III, subunits gamma and tau [Spirochaeta thermophila
DSM 6578]
Length = 510
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 151/265 (56%), Gaps = 1/265 (0%)
Query: 417 PRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPK 476
P+TF+DL GQ V L+NA+ +V Y+F GP G GKTS ARI A+ALNC+ P+
Sbjct: 12 PQTFKDLKGQEFVVSTLTNALKAGRVAHAYLFSGPRGVGKTSAARILAKALNCEQGVTPE 71
Query: 477 PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTL 536
PCG C SC +G + ++ E+ N + + + ++ + ++Y++++ D+ L
Sbjct: 72 PCGTCTSCKEISQGTAIDVIEIDGASNTSVNDVRVIREEVLFAPGKARYKVYIIDEVHML 131
Query: 537 SPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIA 596
S +++A+ K ++ P VVFI ++ L +P I SRCQ++ F + I L+ A
Sbjct: 132 SNSAFNALLKTIEEPPPYVVFIFATTELQRVPATIRSRCQQYHFRLISPEVIASLLREAA 191
Query: 597 SKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLISDEKLVD 655
S+ +E++++AL IA +DGSLRDA +Q+ + R+S L+QE +GL+ E+L
Sbjct: 192 SEMQVEVEEEALSWIAKEADGSLRDAYTLFDQVVSFSEGRLSYALIQEKLGLVGFERLQA 251
Query: 656 LLDLALSADTVNTVKNLRVIMETGV 680
+++ + + + + I+ +GV
Sbjct: 252 VVEACVREEVKGALDLVHEILMSGV 276
>gi|206901396|ref|YP_002251788.1| DNA polymerase III subunit gamma/tau [Dictyoglomus thermophilum
H-6-12]
gi|206740499|gb|ACI19557.1| DNA polymerase III subunit gamma/tau [Dictyoglomus thermophilum
H-6-12]
Length = 521
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 193/379 (50%), Gaps = 20/379 (5%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P+TF ++VGQ + L N++ +G Y+F GP GTGKT+ ARI A+ALNC
Sbjct: 5 LYRKWRPQTFEEVVGQEHIVITLQNSLRYNHIGHAYLFAGPRGTGKTTIARILAKALNCV 64
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
P PC C SC+ G+S ++ E+ N + I D+ + +Y++++
Sbjct: 65 QGPTPTPCLKCESCVEIAEGRSIDVIEIDAASNRGIDEIRDIREKARLLPVRDRYKVYII 124
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K+++ P VVFI+ ++ +P I+SRCQ+F F ++ ++I
Sbjct: 125 DEVHMLTNEAFNALLKILEEPPEHVVFIMATTEPQKVPLTILSRCQRFDFRRLTRDEVIK 184
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVGLIS 649
L IA KEG +I + AL+LIA +S GS+RDA LEQL + Q I+ L + L+GL +
Sbjct: 185 QLAKIAEKEGAKISEGALRLIAIQSQGSMRDAISLLEQLLVYSDQEITEELARNLLGLPT 244
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR 709
E + + + L+ I + G P +L ++L D
Sbjct: 245 YEFTYNFAKALGEYNILEGYSLLQQIFQMGKNPQQFAKELLQHFRNLLLLKAD------- 297
Query: 710 RKFFRRQPLSKEEMEKLRQ-----ALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYV 764
+ L++EE E+L Q +K L + QL + ++L LT A L + + +
Sbjct: 298 ERIGNLLSLTQEEFEELMQETKLYTIKRLQDIIDQLLILENRLRDLTNAPLVM---EMIL 354
Query: 765 LP----SSSADTSFSHSPL 779
LP +A+T PL
Sbjct: 355 LPLFMKEETAETQPISQPL 373
>gi|339637543|emb|CCC16477.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
pentosus IG1]
Length = 567
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/361 (27%), Positives = 191/361 (52%), Gaps = 15/361 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L + + P+ F ++VGQ ++ Q L NA+M + Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YRALYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAI 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC L +PC C +C + +G+ ++ E+ N E I D+ D + + Y++
Sbjct: 62 NCHHLVDGEPCNECETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV-- 645
+ +I +++ + D+ AL++IA+ ++G +RDA L+Q+ G +V L L+
Sbjct: 182 SYDRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDN-TVTLDDALMVT 240
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-------- 697
G ++ + L + + +T ++ +R I++ G + + L + D+L
Sbjct: 241 GSVTKQLLANYVTQVTHHETKPALETMREILQEGKDANRFIEDLISYTRDVLLYQQAPEM 300
Query: 698 AGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
S +D + + F ++ + E L Q +KTL++ ++Q+R + +L ++L
Sbjct: 301 VDSVAMGEDDQQFEAFAKEI----DAEVLYQMVKTLNDIQQQMRFTTHPDVYLEVLTVKL 356
Query: 758 A 758
A
Sbjct: 357 A 357
>gi|304407306|ref|ZP_07388959.1| DNA polymerase III, subunits gamma and tau [Paenibacillus
curdlanolyticus YK9]
gi|304343747|gb|EFM09588.1| DNA polymerase III, subunits gamma and tau [Paenibacillus
curdlanolyticus YK9]
Length = 597
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 157/291 (53%), Gaps = 1/291 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H L + + P+TF D+VGQ + + L NA+ +V Y+F GP GTGKTS A+I A+A+
Sbjct: 3 HIALYRAWRPQTFHDMVGQRHIIRTLQNAIREDRVSHAYLFNGPRGTGKTSAAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ P+PC C++C+ G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCERGPAPEPCNECDACLGITAGTVMDVVEIDAASNRGIDEIRDIRDKVRYAPSEVRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+FIL ++ LP IISRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPGHVIFILATTEPHKLPPTIISRCQRFDFRQVSLEE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELVG 646
L+ I +EGIE D++AL IA S+G +RDA LEQ + G+RI++ ++ G
Sbjct: 183 QTERLRLICQEEGIEADEEALAYIARLSEGGMRDAIGLLEQSAAFGGERITLEGAVDVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
++ E+ L + + + + +M+ G M D+L
Sbjct: 243 GLAAEQFAKLAEAVRDRNAGAVLPLVEGLMQAGKSAEKCMENFIYYFRDLL 293
>gi|329930186|ref|ZP_08283799.1| DNA polymerase III, subunit gamma and tau [Paenibacillus sp. HGF5]
gi|328935208|gb|EGG31689.1| DNA polymerase III, subunit gamma and tau [Paenibacillus sp. HGF5]
Length = 571
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 181/358 (50%), Gaps = 9/358 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H L + + P++F D+VGQ + Q L NA+ ++V Y+F GP GTGKTS A+I A+A+
Sbjct: 3 HIALYRAWRPQSFGDMVGQQHIIQTLQNAIREQRVSHAYLFSGPRGTGKTSAAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C G +++E+ N E I DL + + + + ++
Sbjct: 63 NCEHGPAEEPCNACEACRRITSGAVMDVQEIDAASNRGVEEIRDLREKVKYAPTEVRRKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+FIL ++ LP IISRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPAHVMFILATTEPHRLPATIISRCQRFDFRRVSLEE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVG 646
L+ I +EGI + +AL+ IA SDG +RDA L+Q+ S G +S V ++ G
Sbjct: 183 QTGRLEQICGEEGITAEHEALQYIARLSDGGMRDALSILDQIASFTGGTVSYRQVMDMTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
I+ E+ L D ++ + M+ G M L D+L D
Sbjct: 243 GIASEQFGRLAGAVKQGDAGLVLQIVEQFMQEGKSADKCMENLLYYFRDLLMIKMVPDAD 302
Query: 707 RHRRKFFRRQPLSKEEM------EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ + P +EM ++L Q + TL+ + +++ ++ T ALL+L+
Sbjct: 303 KLTDRVLN--PAEFQEMANAFSRDELFQMIDTLNRYQSEMKYASQPQTLFEVALLKLS 358
>gi|110678389|ref|YP_681396.1| DNA polymerase III subunits gamma and tau [Roseobacter
denitrificans OCh 114]
gi|109454505|gb|ABG30710.1| DNA polymerase III, tau subunit [Roseobacter denitrificans OCh 114]
Length = 582
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 162/299 (54%), Gaps = 6/299 (2%)
Query: 400 LGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSC 459
+ + + +Q L +KY P TF DLVGQ+ + Q L NA ++ ++ G GTGKT+
Sbjct: 1 MSETPHAPYQVLARKYRPETFADLVGQDAMVQTLKNAFEADRIAQAFIMTGIRGTGKTTT 60
Query: 460 ARIFARALNCQSLE-----QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLD 514
ARI A+ +NC + PCG C C + G+ ++ E+ N +I +++D
Sbjct: 61 ARIIAKGMNCIGPDGTGRPTTDPCGTCEHCTAIMEGRHVDVMEMDAASNTGVANIREIID 120
Query: 515 NMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISR 574
++ ++Y++++ D+ LS +++A+ K ++ P V FI ++ + +P ++SR
Sbjct: 121 SVHYRAASARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSR 180
Query: 575 CQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLG 633
CQ+F +++ +I ++ IA+ EG EI +DA+ LIA ++GS RDA L+Q +S
Sbjct: 181 CQRFDLRRIEPEVMIDLMRKIATAEGAEIAQDAMALIARAAEGSARDATSLLDQAISHGA 240
Query: 634 QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV 692
+ V+ ++GL +++DL D+ L DT + L G +P+A++ LA +
Sbjct: 241 GETTAAQVRAMLGLADRGRVLDLFDMILRGDTAGALTELSAQYAEGADPMAVLRDLAEI 299
>gi|449896717|ref|ZP_21789877.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
R221]
gi|449261682|gb|EMC59148.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
R221]
Length = 558
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 165/320 (51%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F ++VGQ +VA+ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQIFDEMVGQEVVAKTLKQAVASEKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|417937224|ref|ZP_12580528.1| DNA polymerase III, subunit gamma and tau [Streptococcus infantis
X]
gi|343398909|gb|EGV11435.1| DNA polymerase III, subunit gamma and tau [Streptococcus infantis
X]
Length = 554
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 175/337 (51%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEIVARTLKQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I D+ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIRDIRDKSTYAPSIAKYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTPNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR--ISVPLVQELV 645
I + I KEGI+ + +A+++IA R++G +RDA L+Q L Q ++ + +E+
Sbjct: 182 IRDHIFQILEKEGIDYETEAVEIIARRAEGGMRDALSILDQALSLTQEATLTTAVSEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L + D ++NL +I E G + L + DIL
Sbjct: 242 GTISLSALDHYVAALAQKDVPGALQNLDLIFENGKSMTRFVVDLLQYLRDILIVQAGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F R L ++ + E + A ++L++ + L+
Sbjct: 302 THHSDAFERNLALPQDVLFEMISLATRSLADIKASLQ 338
>gi|417849074|ref|ZP_12495002.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis
SK1080]
gi|339457275|gb|EGP69852.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis
SK1080]
Length = 551
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVSALSQQDVPKALACLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L +E + E +R A +L++ + L+
Sbjct: 302 THHSPVFVENLALPQENLFEMIRLATVSLADIKSSLQ 338
>gi|94969002|ref|YP_591050.1| DNA polymerase III subunits gamma and tau [Candidatus Koribacter
versatilis Ellin345]
gi|94551052|gb|ABF40976.1| DNA polymerase III, tau subunit [Candidatus Koribacter versatilis
Ellin345]
Length = 632
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 162/284 (57%), Gaps = 3/284 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY P+ F +++GQ+ V + L NA+ ++++ Y+F G G GKT+ ARI A AL
Sbjct: 3 YQVLARKYRPQKFSEVIGQDHVTRTLKNAIEQQRIAHGYIFSGHRGIGKTTIARILAMAL 62
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NCQS + P +PCG C+SC G+S ++ E+ N + I +L + ++
Sbjct: 63 NCQSADHPVSEPCGVCDSCKEVKAGQSVDVIEIDAATNRGIDEIRELREAARYRPARDRF 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+I++ D+ ++ +++A+ K ++ P +VF++ ++ + +P I SRCQ F F +K
Sbjct: 123 KIYILDEAHQITDAAFNALLKTLEEPPGHIVFMMATTEPEDIPQTIRSRCQHFSFHAVKF 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQEL 644
DI+ L+ IA KEGI + DAL ++A DGS+RDA ++Q ++ G ++ V+ L
Sbjct: 183 DDIVLQLRDIAGKEGIGAEDDALAMLAEAGDGSMRDALSIMDQAIAACGNQLKTDDVRGL 242
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQ 688
+G +S + L D+++ + + + + + ++ G PL Q
Sbjct: 243 MGTVSSDVLEDIMNGVHANSSESVLTTIDKLLIEGHSPLHFAKQ 286
>gi|402307093|ref|ZP_10826124.1| DNA polymerase III, subunit gamma and tau [Prevotella sp. MSX73]
gi|400379219|gb|EJP32065.1| DNA polymerase III, subunit gamma and tau [Prevotella sp. MSX73]
Length = 615
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 190/357 (53%), Gaps = 16/357 (4%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P +F +VGQ+ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC
Sbjct: 8 RKYRPMSFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC--- 64
Query: 473 EQP----KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYR 526
E P + C C SC + + +S NI E+ N E+I L++ T PP +Y+
Sbjct: 65 EHPHDDGEACNECESCKAFNEQRSYNIFELDAASNNSVENIKALMEQ--TRIPPQVGRYK 122
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+F+ D+ LS +++A K ++ P V+F+L ++ + I+SRCQ + F +M
Sbjct: 123 VFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFVLATTEKHKILPTILSRCQIYDFERMTVP 182
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELV 645
+ I L+ +A KEGI D+ AL++IA ++DG +RDA +Q + Q I+ V E +
Sbjct: 183 NTIAHLKMVADKEGITYDEQALEVIAEKADGGMRDALSIFDQAASFCQGDITYAKVIEDL 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT- 704
++ + ++DLAL + + L ++E G + L++ LA ++L + T
Sbjct: 243 NVLDVDNYFKMIDLALQNKVSDLMVLLNGVLEKGFDGGNLVNGLAAHARNVLMAKDESTL 302
Query: 705 ---KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ ++K ++ + + + +ALK +++ + R S++K + L+Q+A
Sbjct: 303 PLLEVSEQQKLRYKEQARNCKPDFIYKALKIMNQCDINYRQSSNKRLLVELTLIQVA 359
>gi|383938601|ref|ZP_09991806.1| DNA polymerase III, subunit gamma and tau [Streptococcus
pseudopneumoniae SK674]
gi|383714456|gb|EID70457.1| DNA polymerase III, subunit gamma and tau [Streptococcus
pseudopneumoniae SK674]
Length = 551
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 177/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I +++I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIRYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALACLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L +E + E +R A +L++ + L+
Sbjct: 302 THHSPVFVENLALPQENLFEMIRLATVSLADIKSSLQ 338
>gi|449885667|ref|ZP_21785736.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SA41]
gi|450039248|ref|ZP_21836127.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans T4]
gi|449200587|gb|EMC01611.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans T4]
gi|449255078|gb|EMC52957.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SA41]
Length = 558
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 165/320 (51%), Gaps = 10/320 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F ++VGQ +VA+ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQIFDEMVGQEVVAKTLKQAVASEKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR-ISVPLVQELV 645
I L I KEG+ D++AL LIA R++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEIT 241
Query: 646 GLIS----DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701
G IS D+ + DL L+ +T + +L I G + L + D+L
Sbjct: 242 GSISLRALDQYVADL----LAHETQQALSDLDTIFNNGKSMSRFATDLLNYLRDLLVVQA 297
Query: 702 DFTKDRHRRKFFRRQPLSKE 721
H F + LS+E
Sbjct: 298 GGENTHHGEAFDKNLTLSQE 317
>gi|337751833|ref|YP_004645995.1| DNA polymerase III [Paenibacillus mucilaginosus KNP414]
gi|379724768|ref|YP_005316899.1| DNA polymerase III [Paenibacillus mucilaginosus 3016]
gi|336303022|gb|AEI46125.1| DNA polymerase III [Paenibacillus mucilaginosus KNP414]
gi|378573440|gb|AFC33750.1| DNA polymerase III [Paenibacillus mucilaginosus 3016]
Length = 582
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 158/291 (54%), Gaps = 1/291 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H L + + P++FRD+VGQ + Q L NA+ + Y+F GP GTGKTS A+I A+A+
Sbjct: 3 HIALYRTWRPQSFRDMVGQKHIVQTLQNALREGRFSHAYLFSGPRGTGKTSAAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C +CI G ++ E+ N E I D+ D + + + ++
Sbjct: 63 NCLNGPAVEPCNECEACIRITEGAVMDVVEIDAASNRGVEEIRDIRDKVKYAPTEVRQKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+FIL ++ LP IISRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPAHVMFILATTEPHKLPATIISRCQRFDFRRVALEE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ L+ + ++EGIE ++DAL IA SDG +RDA L+Q ++ GQR++ V + G
Sbjct: 183 QVERLREVCTEEGIESEEDALAFIARLSDGGMRDALSLLDQIIAFSGQRVTYDDVLSITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
++ ++ L+ + D +K + M+ G M L D+L
Sbjct: 243 GMASDQFEKLVSAVQNRDVGAALKLIESFMQEGKSADKCMESLIYYFRDLL 293
>gi|332299032|ref|YP_004440954.1| DNA polymerase III subunits gamma and tau [Treponema brennaborense
DSM 12168]
gi|332182135|gb|AEE17823.1| DNA polymerase III, subunits gamma and tau [Treponema brennaborense
DSM 12168]
Length = 672
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 154/291 (52%), Gaps = 1/291 (0%)
Query: 417 PRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPK 476
P+ F DLVGQ VA L NA+ K+ Y+F GP G GKTS ARI A+ALNC+
Sbjct: 12 PQRFDDLVGQEFVAATLKNAIQSGKIAHAYLFAGPRGCGKTSSARILAKALNCEKGPAAV 71
Query: 477 PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTL 536
PCG C +C RG S ++ E+ N + + D ++ +Y+I++ D+ L
Sbjct: 72 PCGECAACREITRGSSLDVIEIDGASNTSVNDVRQIKDEVLFPPNSCRYKIYIIDEVHML 131
Query: 537 SPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIA 596
S +++A+ K ++ P V+FI ++ L +P I SRCQ+F F + I L A
Sbjct: 132 STSAFNALLKTIEEPPPYVIFIFATTELHKVPATIKSRCQQFHFRLVAVEQIKELLAQAA 191
Query: 597 SKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLISDEKLVD 655
++ ++ D +AL IA S GS+RDA +Q+S I+ ++E +GL+ ++L
Sbjct: 192 AEIQVQADDEALYWIARESTGSIRDAYTLFDQVSSFSDGHITFDKIREKLGLVGVDRLNG 251
Query: 656 LLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
L ++ ++AD ++ L I+++GV +S +A + +L TK+
Sbjct: 252 LCEICVAADASAAIERLDEILQSGVSIEQFISNVADYVRSLLLIKTGITKE 302
>gi|334881817|emb|CCB82724.1| DNA-directed DNA polymerase III, gamma/tau subuni t [Lactobacillus
pentosus MP-10]
Length = 567
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/361 (27%), Positives = 191/361 (52%), Gaps = 15/361 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L + + P+ F ++VGQ ++ Q L NA+M + Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YRALYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAI 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC L +PC C +C + +G+ ++ E+ N E I D+ D + + Y++
Sbjct: 62 NCHHLVDGEPCNECETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV-- 645
+ +I +++ + D+ AL++IA+ ++G +RDA L+Q+ G +V L L+
Sbjct: 182 SYDRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDN-TVTLDDALMVT 240
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-------- 697
G ++ + L + + +T ++ +R I++ G + + L + D+L
Sbjct: 241 GSVTKQLLANYVTQVTHHETKPALETMREILQEGKDANRFIEDLISYTRDVLLYQQAPEM 300
Query: 698 AGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
S +D + + F ++ + E L Q +KTL++ ++Q+R + +L ++L
Sbjct: 301 VDSVAMGEDDQQFEAFAKEI----DAEVLYQMVKTLNDIQQQMRFTTHPDVYLEVLTVKL 356
Query: 758 A 758
A
Sbjct: 357 A 357
>gi|315607781|ref|ZP_07882774.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella buccae ATCC
33574]
gi|315250250|gb|EFU30246.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella buccae ATCC
33574]
Length = 615
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 190/357 (53%), Gaps = 16/357 (4%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P +F +VGQ+ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC
Sbjct: 8 RKYRPMSFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC--- 64
Query: 473 EQP----KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYR 526
E P + C C SC + + +S NI E+ N E+I L++ T PP +Y+
Sbjct: 65 EHPHDDGEACNECESCKAFNEQRSYNIFELDAASNNSVENIKALMEQ--TRIPPQVGRYK 122
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+F+ D+ LS +++A K ++ P V+F+L ++ + I+SRCQ + F +M
Sbjct: 123 VFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFVLATTEKHKILPTILSRCQIYDFERMTVP 182
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELV 645
+ I L+ +A KEGI D+ AL++IA ++DG +RDA +Q + Q I+ V E +
Sbjct: 183 NTIAHLKMVADKEGITYDEQALEVIAEKADGGMRDALSIFDQAASFCQGDITYAKVIEDL 242
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT- 704
++ + ++DLAL + + L ++E G + L++ LA ++L + T
Sbjct: 243 NVLDVDNYFKMIDLALQNKVSDLMVLLNGVLEKGFDGGNLVNGLAAHARNVLMAKDESTL 302
Query: 705 ---KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ ++K ++ + + + +ALK +++ + R S++K + L+Q+A
Sbjct: 303 PLLEVSEQQKLRYKEQARNCKPDFIYKALKIMNQCDINYRQSSNKRLLVELTLIQVA 359
>gi|307127584|ref|YP_003879615.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
670-6B]
gi|417676613|ref|ZP_12326026.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA17545]
gi|418112214|ref|ZP_12749216.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA41538]
gi|418154897|ref|ZP_12791628.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA16242]
gi|418225286|ref|ZP_12851915.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae NP112]
gi|419466312|ref|ZP_14006195.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA05248]
gi|419512255|ref|ZP_14051889.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA05578]
gi|419516539|ref|ZP_14056157.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA02506]
gi|421236016|ref|ZP_15692617.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2071004]
gi|421283048|ref|ZP_15733837.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA04216]
gi|421298335|ref|ZP_15749023.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA60080]
gi|306484646|gb|ADM91515.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
670-6B]
gi|332077278|gb|EGI87740.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA17545]
gi|353784080|gb|EHD64501.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA41538]
gi|353823189|gb|EHE03364.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA16242]
gi|353882594|gb|EHE62405.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae NP112]
gi|379544435|gb|EHZ09579.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA05248]
gi|379636725|gb|EIA01283.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA05578]
gi|379640542|gb|EIA05081.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA02506]
gi|395604935|gb|EJG65067.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2071004]
gi|395882914|gb|EJG93958.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA04216]
gi|395902291|gb|EJH13224.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA60080]
Length = 551
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ M E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNMFEMIRLATVSLADIKSSLQ 338
>gi|110598224|ref|ZP_01386500.1| DNA polymerase III, subunits gamma and tau [Chlorobium ferrooxidans
DSM 13031]
gi|110340139|gb|EAT58638.1| DNA polymerase III, subunits gamma and tau [Chlorobium ferrooxidans
DSM 13031]
Length = 402
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/381 (28%), Positives = 183/381 (48%), Gaps = 30/381 (7%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q + +KY P F D+ Q + + + N++ ++G Y+F G G GKT+ AR+FA+A+
Sbjct: 3 YQVIARKYRPSKFADITAQEHITRTIQNSLRMGRLGHGYIFSGLRGVGKTTAARVFAKAV 62
Query: 468 NCQSL--------EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTS 519
NCQ + E +PCG C SC D G S NI E N + I L +N+
Sbjct: 63 NCQRMMEDPVYLQEVTEPCGECESCRDFDSGTSLNISEFDAASNNSVDDIRALRENVRYG 122
Query: 520 RPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFF 579
+YR+++ D+ LS +++A K ++ P +FI ++ L +P I SRCQ+F
Sbjct: 123 PQKGKYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFN 182
Query: 580 FPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR---- 635
F ++ DI LQ I E I ++ DAL+LI ++ GS+RDA+ L+Q+
Sbjct: 183 FKRIPLPDIQKQLQTICDAEKITVEGDALQLIGRKAQGSMRDAQSILDQVIAFTAENDHE 242
Query: 636 --ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVI 693
IS V EL+ I DE + + D L + ++ + ++ G + + +L +
Sbjct: 243 GSISYQSVAELLNYIDDEHMFGVTDAVLERNHAAMLEVAQFVIRNGYDEQDFLEKLIEHL 302
Query: 694 TDI----------LAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMS 743
+I L D ++R++R + P S L Q ++ L + +K+L+
Sbjct: 303 RNILVVLNLSSTRLVERPDAVRERYQRDATKFSPFS------LMQMVEFLLQTQKELKFQ 356
Query: 744 NDKLTWLTAALLQLAPDQQYV 764
+ ALL+L Q V
Sbjct: 357 FEYQFRFELALLKLIDIDQIV 377
>gi|171779618|ref|ZP_02920574.1| hypothetical protein STRINF_01455 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281720|gb|EDT47154.1| DNA polymerase III, subunit gamma and tau [Streptococcus
infantarius subsp. infantarius ATCC BAA-102]
Length = 562
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 157/294 (53%), Gaps = 2/294 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQTVISTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQVNGEPCNHCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K A
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKLAA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLG-QRISVPLVQELV 645
I L I KEGI ++DAL LIA ++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IRDHLADILGKEGITYEEDALTLIARCAEGGMRDALSILDQALSLTSDNHVSLSIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAG 699
G IS L D + L+ T + NL I ++G + L + D+L
Sbjct: 242 GSISMTALDDFVANVLANQTSQALTNLETIFDSGKSMSRFATDLLNYLRDLLVA 295
>gi|313114018|ref|ZP_07799572.1| DNA polymerase III, subunit gamma and tau [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310623638|gb|EFQ07039.1| DNA polymerase III, subunit gamma and tau [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 620
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 152/282 (53%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L +K+ P+ F D+VGQ + AL N + +VG Y+F G GTGKT+CA+IFA+A+
Sbjct: 2 YRALYRKWRPQRFEDVVGQRAIVTALKNQITANRVGHAYLFTGVRGTGKTTCAKIFAKAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC PCG C C D G ++ E+ N + I DL D + +Y++
Sbjct: 62 NCLHPVNGDPCGECEICKGIDNGSILDVVEMDAASNNGVDDIRDLRDETAYTPSACKYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ + +P I+SRCQ++ F ++ D
Sbjct: 122 YIIDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILSRCQRYDFTRIGPED 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGL 647
I +++IA +E +E+ D +LIA +DG+LRDA L+ + + +I +V+ + G+
Sbjct: 182 IARRVEYIAGEEKLELSPDGAELIARLADGALRDALSILDTCAGVTAKIDADVVRRMAGV 241
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689
L + D + D + L + + V+ L +L
Sbjct: 242 TDRSYLFRISDALEAQDGATALAQLAQLRQQSVDVKRLTEEL 283
>gi|281420656|ref|ZP_06251655.1| DNA polymerase III, gamma and tau subunit [Prevotella copri DSM
18205]
gi|281405429|gb|EFB36109.1| DNA polymerase III, gamma and tau subunit [Prevotella copri DSM
18205]
Length = 638
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 190/369 (51%), Gaps = 19/369 (5%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ-SL 472
KY P TF +VGQ+ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC+
Sbjct: 10 KYRPMTFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEHPR 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVF 530
E + C C SC + + +S NI E+ N + I L++ T PP +Y++F+
Sbjct: 70 EDGEACNECESCRAFNEQRSYNIFELDAASNNGVDQIKVLMEQ--TRIPPQVGKYKVFII 127
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A K ++ P+ V+FIL ++ + I+SRCQ + F +M A+ I
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPQHVIFILATTEKHKILPTILSRCQIYDFERMTVANTIN 187
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLIS 649
L+ +A KEGI+ ++ AL +IA ++DG +RDA +Q S I+ V E + ++
Sbjct: 188 HLKMVAEKEGIQYEEQALAVIAEKADGGMRDALSIFDQAASFCMGNITYQKVIEDLNVLD 247
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS------YDF 703
+ L+DLAL + L I+ G + ++ LA + +++
Sbjct: 248 SDNYFRLVDLALENKVAEMMVTLDGILNRGFDGGNMIQGLAQHVRNVMMAKDPQTLPLLE 307
Query: 704 TKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA----P 759
T D + KF + K L +AL+ +++ + R S++K + L+Q+ P
Sbjct: 308 TSDDQKAKF--QAQAQKAPTPFLYKALELMNQCDIHYRASSNKRLLVELTLIQIGQITQP 365
Query: 760 DQQYVLPSS 768
+ Q V PS+
Sbjct: 366 EDQDV-PSA 373
>gi|433461768|ref|ZP_20419370.1| DNA polymerase III subunit gamma/tau [Halobacillus sp. BAB-2008]
gi|432189663|gb|ELK46746.1| DNA polymerase III subunit gamma/tau [Halobacillus sp. BAB-2008]
Length = 574
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 192/357 (53%), Gaps = 9/357 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + PR F +VGQ + + L NA+ + K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRPRNFEGVVGQEHITRTLQNAIEQNKFSHAYLFSGPRGTGKTSAAKIFAQAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C++C+ G ++ E+ N E I ++ D + + Y++
Sbjct: 63 NCERAPVKEPCNECDACLGIQDGSISDVIEIDAASNNGVEQIREIRDKVKYAPSAVPYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F ++
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPKHVLFILATTEPHKIPLTIISRCQRFDFKRISQKA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ ++ I + E I I+K+AL+++A ++G +RDA L+Q +S + +++ V + G
Sbjct: 183 MVGRMEKITAAENITIEKEALEIVALTAEGGMRDALSLLDQAVSYSDEEVTIDDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--AGSYDFT 704
+S KL +++ L D ++ + +++ G +P + L + D+L + D
Sbjct: 243 SVSQAKLTNVIRALLDQDAKAALEAVDDLIQQGKDPGRFVFDLIYYLRDLLLFQSAPDLE 302
Query: 705 KDRHRR---KFFRRQPLSKEEMEK-LRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ R FR LS E ++QA++ L+ +++++ + ++ A+L +
Sbjct: 303 HNLERAIPDPSFRE--LSGELTPAWIQQAIRELNNCQQEMKWTTSPKVFIEIAMLNM 357
>gi|78188902|ref|YP_379240.1| ATPase [Chlorobium chlorochromatii CaD3]
gi|78171101|gb|ABB28197.1| ATPase [Chlorobium chlorochromatii CaD3]
Length = 396
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/388 (28%), Positives = 195/388 (50%), Gaps = 33/388 (8%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q + +KY P F D+ Q V + + NA+ ++G Y+F G G GKT+ ARIFARAL
Sbjct: 3 YQVIARKYRPAKFSDITAQEHVTRTIQNALRSGRIGHGYIFSGLRGVGKTTAARIFARAL 62
Query: 468 NCQSL--------EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTS 519
NCQ L + +PCG C SC D G S NI E N + I L +N+
Sbjct: 63 NCQKLIDDADYLQQVTEPCGECESCRDFDAGTSMNISEFDAASNNGVDDIRTLRENVRYG 122
Query: 520 RPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFF 579
+YR+++ D+ LS +++A K ++ P +FI ++ L +P I SRCQ+F
Sbjct: 123 PQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPPTISSRCQRFN 182
Query: 580 FPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL------SLLG 633
F ++ I LQ I E I+++ DAL+L+A ++ GS+RDA+ L+Q+ + L
Sbjct: 183 FKRIPLEAIQQQLQQICEAEHIQVEADALQLVARKAQGSMRDAQSILDQVIAFSSENALE 242
Query: 634 QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL---- 689
I+ V +L+ I D+ + + D L+ + V ++ +++ G + + +L
Sbjct: 243 GSITYRGVADLLNYIDDDTMFAVTDAVLANNPVAMLEVAHFVLKNGYDEQDFLEKLLEHL 302
Query: 690 ------ATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKL----RQALKTLSEAEKQ 739
+ + L D ++R++R + P + +M +L ++ LK L E + +
Sbjct: 303 RNLLVVLNLSSTRLVERPDAVRERYQRDAAKFSPHTIMQMAELLLQTQKELKFLFEYQFR 362
Query: 740 LRMSNDKLTWL-----TAALLQLAPDQQ 762
++ KL + +AA L +AP+++
Sbjct: 363 FELALLKLLEIAHPPASAAALTIAPEKK 390
>gi|406874340|gb|EKD24317.1| hypothetical protein ACD_81C00055G0007 [uncultured bacterium]
Length = 370
Score = 168 bits (426), Expect = 2e-38, Method: Composition-based stats.
Identities = 89/295 (30%), Positives = 164/295 (55%), Gaps = 7/295 (2%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+ F D++GQ + + + NA ++ Y+FYG G+GKTS AR+ A+ NCQ
Sbjct: 4 LYRKYRPKRFEDVLGQESIVRIIRNAAKTDRLSHAYLFYGARGSGKTSMARLIAKIANCQ 63
Query: 471 SLEQP-------KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS 523
+ +PC C +CI D G + +I E+ + I L + + S
Sbjct: 64 KRQSDPAFKQLGEPCNSCQACIEIDSGNAMDIIEIDAASTRGIDDIRSLKEGALLSPSSY 123
Query: 524 QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKM 583
Y++F+ D+ LS D+++A+ K+++ P+ +FIL ++ + +P I SR Q+F F K+
Sbjct: 124 AYKVFIIDEVHQLSKDAFNALLKILEEPPQHAIFILATTEYEKVPPTIASRAQRFHFKKI 183
Query: 584 KDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQE 643
+++ L+ I ++E I +++A++LIA+ +DGS RDAE L+Q++ + + I+V V+
Sbjct: 184 PLKELVEKLKKIVAEESITFEEEAIELIAAGADGSFRDAESLLDQIAAMEETITVESVER 243
Query: 644 LVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA 698
++G ++ ++ DL+DL ++ D + N+ + E G + L +LA
Sbjct: 244 ILGRVAFSRVSDLVDLIIANDLAAALANINTVHEDGYNIVQFAKDLIHYYRRVLA 298
>gi|371910559|dbj|BAL44374.1| DNA polymerase III subunits gamma and tau [uncultured bacterium]
gi|374853670|dbj|BAL56572.1| DNA polymerase III subunit gamma/tau [uncultured Chloroflexi
bacterium]
Length = 523
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 151/251 (60%), Gaps = 1/251 (0%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q L + Y P+ ++++VGQ V Q L NA+ ++ Y+F GP GTGKT+ AR+ A+A+N
Sbjct: 3 QALYRTYRPQGWQEVVGQEHVVQTLRNALQAGRIAHAYLFAGPRGTGKTTLARLLAKAVN 62
Query: 469 CQSLE-QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
C + +PC C +C++ G+ ++ E+ N E + DL D + + +Y++
Sbjct: 63 CLDPDPAARPCDRCENCLAVREGRFLDLIEIDAASNTSVEDVRDLRDKVNFAPSQGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+F+L ++ + +P ++SRCQ+ F ++ A+
Sbjct: 123 YIIDEVHMLSTAAFNALLKTLEEPPSHVIFVLATTEIHKIPATVLSRCQRHEFRRLSVAE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGL 647
I+ L+ IA KE ++ + +AL LIA ++ GSLRDA L+Q++ G I++ LVQ L+G
Sbjct: 183 IVGQLERIAEKEALQAEAEALTLIARQASGSLRDAISLLDQVASAGLPITLALVQTLLGT 242
Query: 648 ISDEKLVDLLD 658
+ + +L++
Sbjct: 243 AAPTSVPELIE 253
>gi|307706413|ref|ZP_07643223.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis
SK321]
gi|307618200|gb|EFN97357.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis
SK321]
Length = 551
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 177/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I +++I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIRYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTTISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L +E + E +R A +L++ + L+
Sbjct: 302 THHSPVFVENLALPQENLFEMIRLATVSLADIKSSLQ 338
>gi|408401958|ref|YP_006859922.1| DNA polymerase III subunits gamma and tau [Streptococcus
dysgalactiae subsp. equisimilis RE378]
gi|407968187|dbj|BAM61425.1| DNA polymerase III subunits gamma and tau [Streptococcus
dysgalactiae subsp. equisimilis RE378]
Length = 559
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 186/365 (50%), Gaps = 11/365 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVNGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQMA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L I KEG+ + DAL LIA R++G +RDA L+Q LSL ++++ + +E+
Sbjct: 182 IREHLASILDKEGLTYEVDALNLIARRAEGGMRDALSILDQALSLSPDDQVTMAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL---AGSYD 702
G IS L D + + ++ L I ++G + L T + D+L AG
Sbjct: 242 GSISMVALDDYVQHLMENQATQALQALETIYDSGKSMSRFATDLLTYLRDLLVVKAGG-- 299
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
D R+ LS ME++ Q + ++ +++ + +QLA ++
Sbjct: 300 ---DNQRQSALFDTNLSL-PMERIFQMIAVVTNHLPEIKKGTHPRIYAEMMTIQLAKEEG 355
Query: 763 YVLPS 767
LPS
Sbjct: 356 VALPS 360
>gi|350566424|ref|ZP_08935095.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus indolicus
ATCC 29427]
gi|348662773|gb|EGY79415.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus indolicus
ATCC 29427]
Length = 545
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 196/356 (55%), Gaps = 9/356 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQN V AL N ++ + Y+F G GTGKTSCA+I +RA+
Sbjct: 2 YQALYRKYRSKTFEEIVGQNHVTTALKNQIINNEFSHAYLFSGTRGTGKTSCAKILSRAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QY 525
NC+ PC C SC S + ++ E+ N + I +L D +V PP +Y
Sbjct: 62 NCEHPVDGNPCNECESCRSILEDRVMDVVEMDAASNNGVDDIRELKDKVV--YPPQNLKY 119
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ LS +++A+ K+++ PR ++FIL ++ + +P I+SR Q++ F ++ +
Sbjct: 120 KVYIIDEVHMLSKGAFNALLKILEEPPRHLIFILATTEPEKIPTTILSRLQRYNFKRISE 179
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQEL 644
+I L+ I+ E E++ + +LIA+ SDG++RD+ L+QL S ++++ ++
Sbjct: 180 DEISSNLERISKIENREVEPEVFELIANSSDGAMRDSLSLLDQLFSFSDEKLTYERAIDI 239
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA-GSYDF 703
+G++S++ L +L D + + ++ + + + G + L+S L T +++ G+ +
Sbjct: 240 LGIVSNKFLFNLSDAIIERNLAQSLAEMDELYKAGKDITILISDLITHFRNVMVIGATNS 299
Query: 704 TKDRHRRKF--FRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
H +F ++ Q K ++ + +K L+ ++ S DK + L++L
Sbjct: 300 ETLVHTSQFEEYKNQA-EKAGASRIIEIIKILNNTLSNIKYSMDKRVMIEMCLVEL 354
>gi|325268871|ref|ZP_08135496.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella multiformis
DSM 16608]
gi|324988843|gb|EGC20801.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella multiformis
DSM 16608]
Length = 601
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 189/357 (52%), Gaps = 16/357 (4%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P +F +VGQ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC
Sbjct: 9 RKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC--- 65
Query: 473 EQP----KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYR 526
E P + C C SC + G+S NI E+ N E+I L+D T PP +Y+
Sbjct: 66 EHPTADGEACNECESCKAFSEGRSYNIFELDAASNNSVENIKSLMDQ--TRIPPQVGRYK 123
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+F+ D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M
Sbjct: 124 VFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVP 183
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELV 645
+II L+ +A KE I+ +++AL +IA ++DG +RDA +Q + Q I+ V E +
Sbjct: 184 NIISHLKSVAEKENIQYEEEALNVIAEKADGGMRDALSIFDQTASFSQGNITYQKVIEDL 243
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSY 701
++ + ++DLAL + L ++ G + L++ LA+ + ++L A +
Sbjct: 244 NVLDADNYFHIIDLALENKVSEVMVLLNDVINKGFDGGHLVNGLASHVRNVLMAKDAQTL 303
Query: 702 DFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ +++ ++ + + L AL+ ++ + + R S++K + L+Q+A
Sbjct: 304 PLLETSQQQRQRYQEQAQRCPVRFLYSALQIMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|56807590|ref|ZP_00365500.1| COG2812: DNA polymerase III, gamma/tau subunits [Streptococcus
pyogenes M49 591]
Length = 334
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 157/292 (53%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L W+ KEGI + DAL LIA R++G +RDA L+Q LSL ++++ + +E+
Sbjct: 182 IREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + + L I ++G + L T + D+L
Sbjct: 242 GSISILALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLL 293
>gi|359688793|ref|ZP_09258794.1| DNA polymerase III subunits gamma and tau [Leptospira licerasiae
serovar Varillal str. MMD0835]
gi|418749066|ref|ZP_13305358.1| DNA polymerase III, subunit gamma and tau [Leptospira licerasiae
str. MMD4847]
gi|418757189|ref|ZP_13313377.1| DNA polymerase III, subunit gamma and tau [Leptospira licerasiae
serovar Varillal str. VAR 010]
gi|384116860|gb|EIE03117.1| DNA polymerase III, subunit gamma and tau [Leptospira licerasiae
serovar Varillal str. VAR 010]
gi|404276135|gb|EJZ43449.1| DNA polymerase III, subunit gamma and tau [Leptospira licerasiae
str. MMD4847]
Length = 482
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 156/271 (57%), Gaps = 3/271 (1%)
Query: 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFAR 465
G H+ L++KY P+ F+D++ QNL AL NAV K+G Y+F+GP G GKT+ ARIFA+
Sbjct: 3 GNHEVLSRKYRPQRFQDVIHQNLAIGALQNAVKSGKIGHAYIFFGPRGVGKTTIARIFAK 62
Query: 466 ALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
LNCQ+ +PC C+SC +G S ++ E+ N E+I +L DN+ + +Y
Sbjct: 63 RLNCQNPIDNEPCNQCDSCQEITKGISGDVLEIDAASNRGIENIRELRDNVKFTPMGGKY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ L+ S++A+ K ++ P VVF+L ++ +P I+SRCQ F F K+
Sbjct: 123 KVYIIDEVHMLTDQSFNALLKTLEEPPAHVVFVLATTEYHKIPETILSRCQDFIFKKVPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQEL 644
+ + + + +E + D + L +A + DGS+RD +EQ L R+ ++++
Sbjct: 183 SVLQDYAENLCKEENTKYDSEGLFWVAKKGDGSVRDMLSFMEQALVFTDNRLLGSEIRKM 242
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVI 675
+G + L D + + A+ N+ K+L++I
Sbjct: 243 IGYHGIDFLSDFIKSLVDAE--NSSKSLQII 271
>gi|78187181|ref|YP_375224.1| DNA-directed DNA polymerase [Chlorobium luteolum DSM 273]
gi|78167083|gb|ABB24181.1| DNA-directed DNA polymerase [Chlorobium luteolum DSM 273]
Length = 396
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/373 (28%), Positives = 182/373 (48%), Gaps = 28/373 (7%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q + +KY P F D+ Q + + + NA+ ++G Y+F G G GKT+ AR+FA+AL
Sbjct: 3 YQVIARKYRPAKFADITAQEHITRTIQNALRMGRLGHGYIFSGLRGVGKTTAARVFAKAL 62
Query: 468 NCQSL--------EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTS 519
NCQ + + +PCG C SC + G S NI E N + I L +N+
Sbjct: 63 NCQRMIDDADWLRDVTEPCGECESCRDFETGTSLNIAEFDAASNNSVDDIRALRENVRYG 122
Query: 520 RPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFF 579
+YR+++ D+ LS +++A K ++ P +FI ++ L +P I SRCQ+F
Sbjct: 123 PQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFN 182
Query: 580 FPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR---- 635
F ++ +I LQ I EGI+++ DAL+L+ ++ GS+RDA+ L+Q+ +
Sbjct: 183 FKRIPLPEIQQQLQGICESEGIKVEPDALQLVCRKAQGSMRDAQSILDQVIAFSAQSGGD 242
Query: 636 --ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVI 693
IS V EL+ I DE+L + D + D ++ + +++ G + + +L +
Sbjct: 243 GAISYQNVAELLNYIDDEQLFAVTDAIAAGDAPAMIEVAQFVIQNGYDEQDFLEKLIEHL 302
Query: 694 TDILAGSYDFTKDRHRRKFFRRQPLSKEEME---------KLRQALKTLSEAEKQLRMSN 744
++L ++ + R +E E +L Q L E +K+L+
Sbjct: 303 RNLL-----MVQNLRSSRLVERPDAVRERYEADAGKFSARQLMQMASFLLETQKELKFQF 357
Query: 745 DKLTWLTAALLQL 757
+ ALL+L
Sbjct: 358 EYQFRFELALLRL 370
>gi|357236416|ref|ZP_09123759.1| DNA polymerase III subunit gamma and tau [Streptococcus criceti
HS-6]
gi|356884398|gb|EHI74598.1| DNA polymerase III subunit gamma and tau [Streptococcus criceti
HS-6]
Length = 563
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/362 (29%), Positives = 180/362 (49%), Gaps = 5/362 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF +LVGQ +VA L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFEELVGQEVVATTLRQAVASGKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQVDGEPCNQCDICHDITEGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K A
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQAA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLG-QRISVPLVQELV 645
I + I KE I + +AL LIA +++G +RDA L+Q LSL +++ + +E+
Sbjct: 182 IRQHMAEILDKESIAYEDEALNLIARQAEGGMRDALSILDQALSLSADNQVTAAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G + L D L + D++ + +L I ++G + L + DIL
Sbjct: 242 GSVGQAALDDYLAHLIQKDSLAALTDLNTIFDSGKSMSRFATDLLDYLRDILMVQAGGQA 301
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVL 765
R + F L E +L + +++A +L+ + +QLA QQ
Sbjct: 302 SRTSQAFQDNLNL---EQGRLFAMIDRITQAMPELKNGTQPKIYAEMMTIQLAESQQVTE 358
Query: 766 PS 767
P+
Sbjct: 359 PA 360
>gi|307708553|ref|ZP_07645018.1| DNA polymerase III gamma/tau subunit [Streptococcus mitis NCTC
12261]
gi|307615469|gb|EFN94677.1| DNA polymerase III gamma/tau subunit [Streptococcus mitis NCTC
12261]
Length = 551
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 177/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I +++I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIRYILDKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L +E + E +R A +L++ + L+
Sbjct: 302 THHSPVFVENLTLPQENLFEMIRLATVSLADIKSSLQ 338
>gi|320104515|ref|YP_004180106.1| DNA polymerase III subunits gamma and tau [Isosphaera pallida ATCC
43644]
gi|319751797|gb|ADV63557.1| DNA polymerase III, subunits gamma and tau [Isosphaera pallida ATCC
43644]
Length = 662
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 162/291 (55%), Gaps = 1/291 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q + ++Y P++F D+VGQ+ V +ALSNA++ +V Y+F G G GKTS ARIFA+ L
Sbjct: 21 YQVVARRYRPQSFADVVGQDHVVRALSNAIIHHRVTHAYLFCGTRGVGKTSMARIFAKCL 80
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C+ C + G+ ++ E+ N +++ +L N ++Y+I
Sbjct: 81 NCERGPTVEPCQVCDICRAISVGQDVDVIEIDGASNNGVDAVRELRQNAGLRPSRARYKI 140
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
+ D+ L+ +++A+ K ++ P V FI ++ +P ++SRCQ++ F +
Sbjct: 141 YYIDEVHMLTTGAFNALLKTLEEPPEHVKFIFATTEAHKIPITVLSRCQRYDFASITPDT 200
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-ISVPLVQELVG 646
I +L I +EGI + +AL+++A R+ GS+RDA+ LEQL GQ ++V +V +L+G
Sbjct: 201 IQQSLAAICQREGIAAESEALRVVARRASGSMRDAQSLLEQLLSSGQSPLTVEMVHQLLG 260
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
DE +++LD + GV+ L L++ L + D++
Sbjct: 261 TPDDELTLEILDALAGQRAGEALCLFDQAAGRGVQALDLINSLMDALRDVM 311
>gi|253698849|ref|YP_003020038.1| DNA polymerase III subunits gamma/tau [Geobacter sp. M21]
gi|251773699|gb|ACT16280.1| DNA polymerase III, subunits gamma and tau [Geobacter sp. M21]
Length = 579
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 148/246 (60%), Gaps = 1/246 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P+TF DLVGQ V+Q L NA+ +V ++F G G GKTS ARI A+ALNC+
Sbjct: 6 LARKWRPQTFSDLVGQEHVSQTLKNAIDGGRVAHAFLFTGARGVGKTSSARILAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
S +PC C++C+ G S ++ E+ N + I +L DN+ S+Y+IF+
Sbjct: 66 SGLTVEPCNTCSTCLEITEGNSVDVFEIDGASNTGVDDIRELRDNIKYLPSRSRYKIFII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P V FI ++ +P I+SRCQ+F F ++ I+
Sbjct: 126 DEVHMLTTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFKRIALPRIVS 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLIS 649
L++I +EG+++ +AL ++A + DGS+RD+ TL+Q L+ G +++ V L+G++
Sbjct: 186 RLRYIVDQEGVQVSDEALAVVARKGDGSMRDSLSTLDQVLAFCGNQVADADVAALLGVVD 245
Query: 650 DEKLVD 655
++D
Sbjct: 246 RRLIMD 251
>gi|342163536|ref|YP_004768175.1| DNA polymerase III subunits gamma and tau [Streptococcus
pseudopneumoniae IS7493]
gi|341933418|gb|AEL10315.1| DNA polymerase III subunits gamma and tau [Streptococcus
pseudopneumoniae IS7493]
Length = 551
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 177/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I +++I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIRYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALACLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L +E + E +R A +L++ + L+
Sbjct: 302 THHSPVFVENLALPQENLFEMIRLATVSLADIKSSLQ 338
>gi|255658584|ref|ZP_05403993.1| DNA polymerase III, gamma and tau subunit [Mitsuokella multacida
DSM 20544]
gi|260849391|gb|EEX69398.1| DNA polymerase III, gamma and tau subunit [Mitsuokella multacida
DSM 20544]
Length = 631
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 160/268 (59%), Gaps = 4/268 (1%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P+TF+DLVGQ +++ L+NA+ +G Y+F GP GTGKTS A+I A+ALNC+
Sbjct: 6 LYRKWRPQTFKDLVGQEHISRTLANAITSGHIGHAYLFAGPRGTGKTSTAKILAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
P+PCG C C G S ++ E+ N + I DL + + + +Y++++
Sbjct: 66 HGPTPEPCGQCEQCRKIADGSSMDVFEIDAASNRGIDEIRDLRETVKFAPVDGRYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P VVFIL ++ +P I SRCQ++ F ++ +I
Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPAHVVFILATTEAHKVPPTIQSRCQRYDFKRITVEEIES 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L++I ++ +E + +AL +IA ++DG +RDA L+Q + L + I+ V++++GL+
Sbjct: 186 RLRYITAEMKMEAEDEALAMIAIQADGGMRDALSILDQCAALAEGTITAERVRQILGLVG 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIME 677
+ + + AL+A V + L+++ E
Sbjct: 246 HDWIYKMTK-ALAARNVQ--EALQILAE 270
>gi|160945467|ref|ZP_02092693.1| hypothetical protein FAEPRAM212_02992 [Faecalibacterium prausnitzii
M21/2]
gi|158443198|gb|EDP20203.1| DNA polymerase III, subunit gamma and tau [Faecalibacterium
prausnitzii M21/2]
Length = 628
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 141/251 (56%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L +K+ P+ F D+VGQ + AL N + +VG Y+F G GTGKT+CA+IFA+A+
Sbjct: 2 YRALYRKWRPQRFEDVVGQRAIVTALKNQITAGRVGHAYLFTGVRGTGKTTCAKIFAKAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC PCG C C D G ++ E+ N + I DL D + QY++
Sbjct: 62 NCLHPVNGDPCGECEICKGIDNGSLLDVVEMDAASNNGVDDIRDLRDETAYTPSACQYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ + +P I+SRCQ++ F ++ D
Sbjct: 122 YIIDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILSRCQRYDFTRIGPED 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGL 647
I +++IA +E +E+ D +LIA +DG+LRDA L+ + + +I +V+ + G+
Sbjct: 182 IARRVEYIAGEEKLELTSDGAELIARLADGALRDALSILDTCAGVTAKIDADVVRRMAGV 241
Query: 648 ISDEKLVDLLD 658
L + D
Sbjct: 242 TDRSYLFQISD 252
>gi|406883701|gb|EKD31230.1| hypothetical protein ACD_77C00358G0003 [uncultured bacterium]
Length = 570
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 188/360 (52%), Gaps = 22/360 (6%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P +F L+GQ +A+ L N+++++++ Y+F GP G GKT+ ARIFA+ +NC +L
Sbjct: 12 RKYRPTSFETLIGQENIAKTLKNSILKKQLAHAYLFCGPRGVGKTTSARIFAKTINCLNL 71
Query: 473 -EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY---RIF 528
E+ PCG C SCI+ D +S +I E+ N + I LL+ V R P Q ++
Sbjct: 72 SEKLDPCGVCESCIAFDESRSFSIHELDAASNNSVDDI-RLLNEKV--RIPPQIGKCSVY 128
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ LSP +++A K ++ P +FIL ++ + I+SRCQ + F ++ DI
Sbjct: 129 IIDEVHMLSPSAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQTYDFNRISVEDI 188
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGL 647
+ L IA E I I+ +A+ +IA ++DG++RDA +Q ++ G+ I+ V + +
Sbjct: 189 VKNLTQIAQSEKITIEPEAMHIIARKADGAMRDALTLFDQSVAFCGENITYDQVISNLNV 248
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR 707
+ E + L D L + + + I+ G L + L+T + D+L KD
Sbjct: 249 LDYEYYIKLTDHLLEGEHTDALLIFDEILSKGFNSLHFIGGLSTHLRDLL-----ICKDE 303
Query: 708 HRRKFFRRQP-LSKEEMEKLRQ--------ALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
K P L ++ +E+ R+ AL + E ++S ++ + AL++L+
Sbjct: 304 RSAKLLELAPSLIEKYIEQSRRCPVSFLFNALNITTTCEAGYKLSGNQRLHIEFALVKLS 363
>gi|404485202|ref|ZP_11020400.1| DNA polymerase III, subunit gamma and tau [Barnesiella
intestinihominis YIT 11860]
gi|404338637|gb|EJZ65082.1| DNA polymerase III, subunit gamma and tau [Barnesiella
intestinihominis YIT 11860]
Length = 592
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/368 (30%), Positives = 185/368 (50%), Gaps = 19/368 (5%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC-QSL 472
KY P TFR +VGQ + Q L NA+ K+ Y+F GP G GKTSCARIFA+ +NC
Sbjct: 10 KYRPSTFRSVVGQKALTQTLKNAIDSNKLAHAYLFCGPRGVGKTSCARIFAKTINCFHPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
E + C C SC + + +S NI E+ N + I L+D + +Y++F+ D+
Sbjct: 70 ESGEACNECESCRAFNEQRSYNIIELDAASNNSVDDIRTLIDQVRIPPQIGKYKVFIIDE 129
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ P +FIL ++ + I+SRCQ + F ++ DI L
Sbjct: 130 VHMLSAAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQVYDFQRITTTDIAEHL 189
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDE 651
Q++AS+EGI + +AL +IA ++DG +RDA +Q +S G I+ V E + ++ E
Sbjct: 190 QYVASQEGITAEPEALNIIAQKADGGMRDALSVFDQVVSFSGGHITYKSVIENLNVLDYE 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRK 711
L+D L + + + I + G E + L+ D+L +KD
Sbjct: 250 YYFRLVDAFLQNNVPQALMIFKEIRDNGFEAQFFIGGLSRHFRDLLV-----SKDPVTLP 304
Query: 712 FFR-RQPLSK---EEMEK-----LRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
+ ++K E+ EK L +A++ + + R+SN+K + L+Q+ Q
Sbjct: 305 LLEVSESVAKRYGEQAEKCTLPFLYRAMELSNRCDLDYRISNNKQFLVELTLIQIC---Q 361
Query: 763 YVLPSSSA 770
P +SA
Sbjct: 362 ITNPVTSA 369
>gi|89100953|ref|ZP_01173799.1| DnaX [Bacillus sp. NRRL B-14911]
gi|89084324|gb|EAR63479.1| DnaX [Bacillus sp. NRRL B-14911]
Length = 564
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 188/355 (52%), Gaps = 5/355 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA++++K Y+F GP GTGKTS A+I A+ +
Sbjct: 3 YQALYRVWRPQQFIDVVGQEHVTKTLQNALLQQKASHAYLFSGPRGTGKTSAAKILAKTV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C+SCI G ++ E+ N E I D+ D + + +Y++
Sbjct: 63 NCERAPISEPCNECDSCIGITNGSIPDVIEIDAASNNGVEEIRDIRDKVKYAPSAVKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F ++
Sbjct: 123 YIVDEVHMLSIGAFNALLKTLEEPPKHVMFILATTEPHKIPLTIISRCQRFDFKRITAQS 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ ++ I + G++ +++AL ++A ++G +RDA L+Q +S +++ + G
Sbjct: 183 IVGRMKMIVDETGVQYEENALHIVARAAEGGMRDALSLLDQAISFSQDKVTAEDALTVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
+S L L + D ++ L ++ G +P + D+L A S D
Sbjct: 243 AVSQGFLNKLSRNVMEKDAAGALEALETLLFQGKDPSRFIEDFILYYRDMLLYKAAPSLD 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ +R + + + ++L ++ L++A++++R +N +L A+++L
Sbjct: 303 ESLERVMLDEEFKALAEEIDPQQLYSLIEILNKAQQEMRWTNHPRIFLEVAIMKL 357
>gi|297538152|ref|YP_003673921.1| DNA polymerase III subunits gamma and tau [Methylotenera versatilis
301]
gi|297257499|gb|ADI29344.1| DNA polymerase III, subunits gamma and tau [Methylotenera
versatilis 301]
Length = 573
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 163/290 (56%), Gaps = 1/290 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P++F LVGQ+ V +AL+NA+ + ++ Y+F G G GKT+ ARI A++L
Sbjct: 3 YQVLARKWRPKSFETLVGQDHVVRALTNALEQNRLHHAYLFTGTRGVGKTTVARILAKSL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ KPCG C++C DRG+ ++ EV N +++ DLLDN + ++++
Sbjct: 63 NCEKGITAKPCGVCDACTEIDRGRFVDLIEVDAASNTQVDAMRDLLDNAQYAPTSGRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V FIL ++ +P ++SRC +F +M
Sbjct: 123 YIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSRCLQFNLRQMAGTS 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA-EMTLEQLSLLGQRISVPLVQELVG 646
II LQ I +E I + AL LIA + GS+RDA +T + ++ GQ ++ V+ ++G
Sbjct: 183 IIEHLQNILGQENIPFEPTALHLIARAAAGSMRDALSLTDQAIAYGGQTVNESEVRAMLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDI 696
I L L++ L+ D + + + + E + ++ LA ++ I
Sbjct: 243 AIDQSYLYQLINALLANDGASIIAQAKSMEERSLSFEVALNDLAQLLHQI 292
>gi|210623910|ref|ZP_03294119.1| hypothetical protein CLOHIR_02070 [Clostridium hiranonis DSM 13275]
gi|210153274|gb|EEA84280.1| hypothetical protein CLOHIR_02070 [Clostridium hiranonis DSM 13275]
Length = 560
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 196/359 (54%), Gaps = 13/359 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H+ L ++Y P+ F D+VGQ + + L N +M + Y+F G GTGKT+ A+IFARA+
Sbjct: 2 HKALYREYRPQKFSDVVGQEHIIRTLKNEIMSGNIAHAYMFSGTRGTGKTTAAKIFARAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C SC S + +I E+ N + + ++ +++ + S+Y++
Sbjct: 62 NCLNPKDGEPCNECESCKSILNDSTVDIFEIDAASNNSVDDVREIRESVKYTPANSKYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS + +A+ K ++ P VVFI ++ + + ++SRCQ+F F ++ +
Sbjct: 122 YIIDEAHMLSKGASNALLKTIEEPPEYVVFIFATTEPNKMIPTVLSRCQRFDFKRITVEE 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-ISVPLVQELVG 646
+ +++I SKEG+E+++DAL +IA S G+LRDA L++ L G + + V E++G
Sbjct: 182 MKERMRYICSKEGVEVEEDALSVIARNSQGALRDALSILDRCILFGDKYLRYEDVVEILG 241
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETG--VEPLA--LMSQLATVITDILAGS-- 700
+++ +++ L D ++ + +K + + +G +E L+ L+ + ++ + AG
Sbjct: 242 IVNIDEIFGLADDIITHNVAAALKKIDSFISSGKDIEILSSELLEHMRNLMICLAAGDSA 301
Query: 701 ---YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
+ D R ++ + +++ + + + LSE + L+ + DK T +++
Sbjct: 302 KEIISVSDDEFDR---MKKSIENTDIDNVIRIINILSEIQNNLKYATDKRTIFEVGIIK 357
>gi|424836504|ref|ZP_18261151.1| DNA polymerase III subunits gamma and tau [Clostridium sporogenes
PA 3679]
gi|365977030|gb|EHN13134.1| DNA polymerase III subunits gamma and tau [Clostridium sporogenes
PA 3679]
Length = 541
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 194/359 (54%), Gaps = 10/359 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L +++ PRTF+++VGQ + L N V+ +++ Y+F G GTGKTS A+I ++A+
Sbjct: 3 YTALYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ--Y 525
NC +L+ +PC C C + G ++ E+ E I ++++N+ PP +
Sbjct: 63 NCLNLKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENV--KYPPQEGKN 120
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ L+ ++ +A K ++ P V+FIL ++ LP I+SRCQ+F F ++++
Sbjct: 121 KVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIRN 180
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQEL 644
+I L+ I S++GI D +L LIA SDG++RDA L+Q+ G ++ V ++
Sbjct: 181 EEIFERLRSIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDM 240
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT 704
+GL+++E L+ + + + D +++ + I+ +G + + + T + +IL
Sbjct: 241 LGLVTNENLLRITNSIIEKDVEKSMRIIEDIVLSGKDIYNFIKDMITHLRNILMVKVSKN 300
Query: 705 KDRHRRKFFRRQPLSKEEMEKLR-----QALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ L KE+ EK+R + +K L EAE+Q + +L A+L++
Sbjct: 301 PNEILDMSSENIDLVKEQAEKIRIEEIMRNIKILQEAEQQSKWVKQSRIYLELAVLKMC 359
>gi|377832131|ref|ZP_09815095.1| DNA polymerase III, subunit gamma and tau [Lactobacillus mucosae
LM1]
gi|377554138|gb|EHT15853.1| DNA polymerase III, subunit gamma and tau [Lactobacillus mucosae
LM1]
Length = 578
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 129/492 (26%), Positives = 231/492 (46%), Gaps = 60/492 (12%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F ++VGQ +V Q L NA++ +++ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRPQRFDEIVGQQVVTQTLKNAIITKQISHAYLFAGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G+ ++ E+ N E I D+ D + + Y++
Sbjct: 63 NCHHRQDGEPCNECEICRAITNGQLGDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQRFDFRRISAQD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+Q+I ++ ++ + DAL +IA+ ++G +RDA L+Q LS ++ + + G
Sbjct: 183 AFERMQYILDQKHVDYENDALWVIANAAEGGMRDALSILDQVLSFSDNQVKLDDALLVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--------- 697
++ + L D S + + ++ I++ G + + L + I D+L
Sbjct: 243 SVTKQLLKKYFDETTSHQSAAALHTMKEILDQGKDGQRFIEDLISFIRDVLLYQESPQLV 302
Query: 698 --AGS----YDFTKDRHRRKFFRRQPLSK-EEMEKLRQALKTLSEAEKQLRMSND---KL 747
AGS DF Q LS+ ++L Q + L+E ++++R + L
Sbjct: 303 NVAGSGLKEADF------------QQLSQAASADELYQMIDELNEIQEEMRFTTHPDVYL 350
Query: 748 TWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISN-KETGV 806
LT L Q+ P D S S L G+ +A I+ ++TG
Sbjct: 351 EVLTVKLSQIKPQ----------DNKTSASDPRLNQTIGQLQQEIQQLQAAIAGLRQTGS 400
Query: 807 PMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNG 866
R+ N+G+ I M + LDR P+ H + + G
Sbjct: 401 GSASRIVRRAGSNTGNKIQPKMT--VKLDRVY------------PIL---EHATKQNLRG 443
Query: 867 IEEIWLEVLNRI 878
++EIW ++LN +
Sbjct: 444 LQEIWGDLLNML 455
>gi|168575523|ref|ZP_02721459.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
MLV-016]
gi|183578398|gb|EDT98926.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
MLV-016]
Length = 551
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAI 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHLHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|307709201|ref|ZP_07645660.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis
SK564]
gi|307620147|gb|EFN99264.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis
SK564]
Length = 551
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ E G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALACLNLLFENGKSMTRFVTDLLHYLRDLLIVQTWGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F + +E + E +R A +L++ + L+
Sbjct: 302 THHSPVFVENLAIHQENLFEMIRLATVSLADIKSSLQ 338
>gi|295105372|emb|CBL02916.1| DNA polymerase III, subunits gamma and tau [Faecalibacterium
prausnitzii SL3/3]
Length = 628
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 141/251 (56%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L +K+ P+ F D+VGQ + AL N + +VG Y+F G GTGKT+CA+IFA+A+
Sbjct: 2 YRALYRKWRPQRFEDVVGQRAIVTALKNQITAGRVGHAYLFTGVRGTGKTTCAKIFAKAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC PCG C C D G ++ E+ N + I DL D + QY++
Sbjct: 62 NCLHPVNGDPCGECEICKGIDNGSLLDVVEMDAASNNGVDDIRDLRDETAYTPSACQYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ + +P I+SRCQ++ F ++ D
Sbjct: 122 YIIDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILSRCQRYDFTRIGPED 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGL 647
I +++IA +E +E+ D +LIA +DG+LRDA L+ + + +I +V+ + G+
Sbjct: 182 IARRVEYIAGEEKLELTSDGAELIARLADGALRDALSILDTCAGVTAKIDADVVRRMAGV 241
Query: 648 ISDEKLVDLLD 658
L + D
Sbjct: 242 TDRSYLFHISD 252
>gi|379704958|ref|YP_005203417.1| DNA polymerase III subunits gamma and tau [Streptococcus
infantarius subsp. infantarius CJ18]
gi|374681657|gb|AEZ61946.1| DNA polymerase III, gamma and tau subunits [Streptococcus
infantarius subsp. infantarius CJ18]
Length = 562
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 156/294 (53%), Gaps = 2/294 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQTVISTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPHQVNGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K A
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKLAA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLG-QRISVPLVQELV 645
I L I KEGI D+DAL LIA ++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IRDHLADILGKEGITYDEDALTLIARCAEGGMRDALSILDQALSLTSDNHVSLSIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAG 699
G S L D + L+ T + NL I ++G + L + D+L
Sbjct: 242 GSTSMTALDDFVANVLANQTSQALTNLETIFDSGKSMSRFATDLLNYLRDLLVA 295
>gi|384133912|ref|YP_005516626.1| DNA polymerase III subunits gamma and tau [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
gi|339287997|gb|AEJ42107.1| DNA polymerase III, subunits gamma and tau [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 585
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 185/364 (50%), Gaps = 12/364 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + Y P+TF DLVGQ V Q L+NA+ ++ Y+F GP GTGKTS A++ A+A+
Sbjct: 3 YQALYRAYRPQTFEDLVGQPHVRQTLTNALKSGQLAHAYLFCGPRGTGKTSTAKLLAKAV 62
Query: 468 NCQSLEQPK----PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS 523
NC +PK PC C C S RG + +++E+ N + I DL D++ +
Sbjct: 63 NCL---KPKDGFEPCNACEVCTSIQRGSNVDVQEIDAASNRGVDEIRDLRDHVHYLPTMA 119
Query: 524 QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKM 583
+ ++++ D+ L+P++++A+ K ++ P V+F+L ++ LP IISRCQ+F F ++
Sbjct: 120 KKKVYIVDEVHMLTPEAFNALLKTLEEPPAHVLFVLATTEPHRLPATIISRCQRFDFRRI 179
Query: 584 KDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQ 642
I+ L+ +A +GIE AL +A +DG LRDA EQ + G RI V
Sbjct: 180 APEAIVERLRLVAQSQGIEAADSALWRLAEAADGGLRDALALFEQAAAFGNGRIDDTTVA 239
Query: 643 ELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDI----LA 698
++VG + LV L+ ++ + L +G + ++ L V+ D+ L+
Sbjct: 240 DVVGSVDMSSLVALVGDLAERSFLSALDRLGRWYASGKDASRIVHDLLQVVRDLFIVKLS 299
Query: 699 GSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
S D + + ++ L A++ L E QLR + L A L+ LA
Sbjct: 300 QSPDALAGKPVAPYLPVASRDDVTVDWLLAAMRRLGELYTQLRYVEEPRLALEAVLMGLA 359
Query: 759 PDQQ 762
+ Q
Sbjct: 360 AEVQ 363
>gi|333895907|ref|YP_004469781.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111172|gb|AEF16109.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 530
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/431 (27%), Positives = 215/431 (49%), Gaps = 25/431 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q+L +KY P++F +++GQN + + L N + ++G Y+F G GTGKTS A+IFA+A+
Sbjct: 2 YQSLYRKYRPKSFCEVLGQNHIVRTLKNQIKSGRIGHAYLFCGTRGTGKTSVAKIFAKAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C S + +I E+ N + + +L DN++ + +Y++
Sbjct: 62 NCPNSVDGEPCNKCQICESANNNSLMDIIEIDAASNNSVDDVRELRDNIIYAPSSCKYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ +FIL ++ + +P I+SRCQ+F F ++
Sbjct: 122 YIIDEVHMLSGSAFNALLKTLEEPPQHAIFILATTEPNKIPATILSRCQRFDFKRISSKV 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGL 647
I ++ IA I ID A+ LIA +GS+RDA LEQ + ++ V +++G
Sbjct: 182 ISQNIKKIAEDSQINIDGKAIALIAKHGNGSMRDAISILEQCASYSDVLTYDDVCDILGT 241
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR 707
++D+ L L++ D +K + +M G++ L+ L + + D++ Y D
Sbjct: 242 VNDDTLFALVNSLNDRDGKEIIKQIDKLMLYGIDVNNLVKALLSFLRDVIV--YKTCGDE 299
Query: 708 HRRKFFRR-----QPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
+ S +M L AL+ L + + ++R + L LL+L
Sbjct: 300 SEEILETEINDVIEKASLFDMAFLSNALEKLIDLQGKIRYAQSPRIMLEITLLKL----- 354
Query: 763 YVLPSSSADTSFSHSPLD----LENAGGRGMTRKGGERAEISNKET----GVPMNVRLEN 814
+ P S D S LD LEN G E+ ++N +T GV +V ++
Sbjct: 355 -INPEISPDID---SILDRLNKLENVIKSGKMMPFVEKDIVANDKTLKSEGVFDDVVIKK 410
Query: 815 FHAENSGDFID 825
A+ + D +D
Sbjct: 411 -EAKKTDDIVD 420
>gi|322417711|ref|YP_004196934.1| DNA polymerase III subunits gamma and tau [Geobacter sp. M18]
gi|320124098|gb|ADW11658.1| DNA polymerase III, subunits gamma and tau [Geobacter sp. M18]
Length = 575
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 148/245 (60%), Gaps = 2/245 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P+TF DLVGQ V+Q L NA+ +V ++F G G GKTS ARI A+ALNC+
Sbjct: 6 LARKWRPQTFSDLVGQEHVSQTLKNAIDGGRVAHAFLFTGARGVGKTSSARILAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
S +PC C++C+ G S ++ E+ N + I +L DN+ S+Y+IF+
Sbjct: 66 SGLTVEPCNSCSTCLEITDGNSVDVFEIDGASNTGVDDIRELRDNIKYLPSRSRYKIFII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P V FI ++ +P I+SRCQ+F F ++ I+
Sbjct: 126 DEVHMLTTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFKRIALPRIVS 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLIS 649
L++I +EG+++ +AL ++A + DGS+RD+ TL+Q L+ G +S V L+G++
Sbjct: 186 RLRYIVDQEGVQVSDEALSVVARKGDGSMRDSLSTLDQVLAFCGNSVSDADVAALLGVV- 244
Query: 650 DEKLV 654
D +L+
Sbjct: 245 DRRLI 249
>gi|363900310|ref|ZP_09326816.1| hypothetical protein HMPREF9625_01476 [Oribacterium sp. ACB1]
gi|395209777|ref|ZP_10398805.1| DNA polymerase III, subunit gamma and tau [Oribacterium sp. ACB8]
gi|361957164|gb|EHL10476.1| hypothetical protein HMPREF9625_01476 [Oribacterium sp. ACB1]
gi|394704762|gb|EJF12294.1| DNA polymerase III, subunit gamma and tau [Oribacterium sp. ACB8]
Length = 525
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 114/372 (30%), Positives = 191/372 (51%), Gaps = 35/372 (9%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L +K+ + F D+VGQ+ + ++ N V +VG Y+F G GTGKTS A+I ARA+
Sbjct: 3 YTALYRKWRSKDFDDIVGQDAITKSFKNQVSSGRVGHAYLFCGTRGTGKTSLAKILARAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS-QYR 526
NC+ PC C +C S S N+ E+ N + I L+ V P +Y+
Sbjct: 63 NCEHPINGNPCNECKNCKSILSNTSINVYEMDAASNNGVDDI-RLIREQVEYPPVDMKYK 121
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+++ D+ LSP +++A K ++ P V+FIL ++ +ALP I+SRCQ++ F ++
Sbjct: 122 VYIIDEVHMLSPSAFNAFLKTLEEPPEYVIFILATTEPNALPITILSRCQRYDFKRISVE 181
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVG 646
I L+ I +E I I ++AL IA DGS+RDA +SLL Q S QE
Sbjct: 182 TIAKRLEMITKEENIAISEEALDYIARMGDGSMRDA------VSLLDQCASYDFQQE--- 232
Query: 647 LISDE---KLVDLLDLALSADTVNTV--KNLRVIMETGVEPLALMSQLATVITDILA--- 698
IS E K++ +D A+ ++ ++ + KN++ +ME L +L+ ++D+L+
Sbjct: 233 -ISYEDALKVLGAVDTAVFSEMISALRQKNIQAVMENIATVLEQGKELSQYVSDLLSYFR 291
Query: 699 ------------GSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDK 746
G D +++ R + + ME++ + ++ LSE +Q R +N K
Sbjct: 292 NMMLAKSVNNLQGLVDLSEENKNRLLKDAESMP---MEEILRGIRLLSELLQQFRYANQK 348
Query: 747 LTWLTAALLQLA 758
L L++LA
Sbjct: 349 RVLLETCLMKLA 360
>gi|327313805|ref|YP_004329242.1| DNA polymerase III subunit gamma and tau [Prevotella denticola
F0289]
gi|326944679|gb|AEA20564.1| DNA polymerase III, subunit gamma and tau [Prevotella denticola
F0289]
Length = 600
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 187/356 (52%), Gaps = 16/356 (4%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
KY P +F +VGQ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC E
Sbjct: 10 KYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC---E 66
Query: 474 QP----KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRI 527
P + C C SC + G+S NI E+ N E+I L++ T PP +Y++
Sbjct: 67 HPTVDGEACNECESCKAFAEGRSYNIFELDAASNNSVENIKSLMEQ--TRIPPQVGRYKV 124
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
F+ D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M +
Sbjct: 125 FIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPN 184
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
II L+ +A KE I+ +++AL +IA ++DG +RDA +Q + Q I+ V E +
Sbjct: 185 IISHLKNVAEKENIQYEEEALAIIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLN 244
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ + +++ LAL + L ++ G + L++ LA+ + ++L A +
Sbjct: 245 VLDADNYFNIVSLALENKVNEIMVLLNDVLNKGFDGGHLVNGLASHVRNVLMAKDAQTLP 304
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ +++ ++ K L AL+ ++ + + R S++K + L+Q+A
Sbjct: 305 LLEVSQQQRLRYQEQAQKCPTRFLYNALQIMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|163789946|ref|ZP_02184382.1| DNA-directed DNA polymerase III, gamma/tau subunit [Carnobacterium
sp. AT7]
gi|159874886|gb|EDP68954.1| DNA-directed DNA polymerase III, gamma/tau subunit [Carnobacterium
sp. AT7]
Length = 606
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 191/363 (52%), Gaps = 21/363 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F+D+ GQ + Q L NA+ + K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRPQRFQDIAGQKAITQTLRNALAQEKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +L+ +PC C +C S +G+ ++ E+ N E I D+ D + + Y++
Sbjct: 63 NCPNLKDGEPCNECETCHSITQGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTSADYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ +++A+ K ++ P+ VVFIL ++ +P IISR Q+F F ++ D
Sbjct: 123 YIIDEVHMLTTGAFNALLKTLEEPPKNVVFILATTEPHKIPLTIISRTQRFDFKRISVRD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ +I ++E I ++AL +IA ++G +RDA L+Q +S ++ + G
Sbjct: 183 SCERMAYILNQEKITYQEEALTVIARAAEGGMRDALSILDQAISYGDDSVTAENAMSVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETG------VEPLALMS------QLATVIT 694
++ E ++D D + T + L+ I+ G VE L L S Q A +T
Sbjct: 243 SLTQELVLDYFDAIIQHKTEKGLSLLQSILAEGKDASRFVEDLILFSRDLLVYQQAPQMT 302
Query: 695 DILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAAL 754
D+L G+ D + Q ++ ++ L + + L++ ++++R +N +L A
Sbjct: 303 DLLEGA---NVDEGFKTL--SQTITAQQ---LYEVIGILNDTQQEMRFTNHAEVYLEVAT 354
Query: 755 LQL 757
++L
Sbjct: 355 VKL 357
>gi|307719903|ref|YP_003875435.1| hypothetical protein STHERM_c22350 [Spirochaeta thermophila DSM
6192]
gi|306533628|gb|ADN03162.1| hypothetical protein STHERM_c22350 [Spirochaeta thermophila DSM
6192]
Length = 510
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 150/265 (56%), Gaps = 1/265 (0%)
Query: 417 PRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPK 476
P+TF+DL GQ V L+NA+ +V Y+F GP G GKTS ARI A+ALNC+ P+
Sbjct: 12 PQTFKDLKGQEFVVSTLTNALKAGRVAHAYLFSGPRGVGKTSAARILAKALNCEQGVTPE 71
Query: 477 PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTL 536
PCG C SC +G + ++ E+ N + + + ++ + ++Y++++ D+ L
Sbjct: 72 PCGTCTSCKEISQGTAIDVIEIDGASNTSVNDVRVIREEVLFAPGKARYKVYIIDEVHML 131
Query: 537 SPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIA 596
S +++A+ K ++ P VVFI ++ L +P I SRCQ++ F + I L+ A
Sbjct: 132 SNSAFNALLKTIEEPPPYVVFIFATTELQRVPATIRSRCQQYHFRLISPEVIASLLREAA 191
Query: 597 SKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLISDEKLVD 655
S+ +E++++AL IA +DGSLRDA +Q+ + R+S L+QE +GL+ E+L
Sbjct: 192 SEMQVEVEEEALSWIAKEADGSLRDAYTLFDQVVSFSEGRLSYALIQEKLGLVGFERLQA 251
Query: 656 LLDLALSADTVNTVKNLRVIMETGV 680
+++ + + + I+ +GV
Sbjct: 252 VVEACAREEVKGALDLVHEILMSGV 276
>gi|322376416|ref|ZP_08050909.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. M334]
gi|321282223|gb|EFX59230.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. M334]
Length = 551
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVVALSQQDVPKALACLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGKN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L +E + E +R A +L++ + L+
Sbjct: 302 THHSPVFVENLALPQENLFEMIRLATVSLADIKSSLQ 338
>gi|194018066|ref|ZP_03056671.1| DNA polymerase III subunit gamma/tau [Bacillus pumilus ATCC 7061]
gi|194010258|gb|EDW19835.1| DNA polymerase III subunit gamma/tau [Bacillus pumilus ATCC 7061]
Length = 570
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 159/291 (54%), Gaps = 1/291 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ + + L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQVFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C++C G ++ E+ N + I D+ D + + Y++
Sbjct: 63 NCEKSPVSEPCNECDACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P +FIL ++ +P IISRCQ+F F ++ D
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQRFDFKRITTKD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ +Q I E + + + +L++IAS +DG +RDA L+Q +S G+++++ + G
Sbjct: 183 IVGRMQKIVDAESLNVQEGSLEIIASAADGGMRDALSLLDQAISFSGEQLTIDDALLITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+S + + L + + + L +++ G + L+ + D+L
Sbjct: 243 AVSQQFISQLAEAIFDQNIAVALDTLNELLQQGKDAAKLIEDMIFYFRDML 293
>gi|261880186|ref|ZP_06006613.1| DNA polymerase III [Prevotella bergensis DSM 17361]
gi|270333160|gb|EFA43946.1| DNA polymerase III [Prevotella bergensis DSM 17361]
Length = 602
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 189/357 (52%), Gaps = 16/357 (4%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P TF +VGQ + L NAV K+ Y+F GP G GKT+CARIFA+ +NC
Sbjct: 9 RKYRPMTFSAVVGQEALTTTLKNAVKGDKLAHAYLFCGPRGVGKTTCARIFAKTINC--- 65
Query: 473 EQP----KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYR 526
E P + C C+SC S + G+S NI E+ N E+I L++ T PP +Y+
Sbjct: 66 EHPSADGEACNECSSCKSFNEGRSMNIFELDAASNNSVENIKTLMEQ--TQIPPQTGRYK 123
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+F+ D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M
Sbjct: 124 VFIIDEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVP 183
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELV 645
+ I L+ +A +EGI +++AL +IA ++DG +RDA +Q++ Q I+ V E +
Sbjct: 184 ETIDHLKKVADQEGISYEEEALGIIAEKADGGMRDALSIFDQVASYCQGNITFQKVLEDL 243
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAG----SY 701
++ E ++DLA+ + + + I+ G + L++ LA+ + +++ +
Sbjct: 244 NVLDAENYFHIIDLAIENKVSDIMVLVNRIIAKGFDAGNLINGLASHVRNVMMANDPQTL 303
Query: 702 DFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ +++ ++ K L QALK ++E + R S++K L+++A
Sbjct: 304 PLLEVSQQQRQKYQEQAKKCPKRFLYQALKIMNECDVNYRQSSNKRLLAELTLIRVA 360
>gi|418974062|ref|ZP_13521994.1| DNA polymerase III, subunit gamma and tau [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|383345871|gb|EID23956.1| DNA polymerase III, subunit gamma and tau [Streptococcus
pseudopneumoniae ATCC BAA-960]
Length = 551
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA +++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARQAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVTKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L +E + E +R A +L++ + L+
Sbjct: 302 THHSPVFVENLALPQENLFEMIRLATVSLADIKSSLQ 338
>gi|126739558|ref|ZP_01755250.1| DNA polymerase III subunits gamma and tau [Roseobacter sp.
SK209-2-6]
gi|126719204|gb|EBA15914.1| DNA polymerase III subunits gamma and tau [Roseobacter sp.
SK209-2-6]
Length = 603
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 161/297 (54%), Gaps = 6/297 (2%)
Query: 402 DNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCAR 461
D ++Q L +KY P TF DLVGQ+ + + L NA ++ ++ G GTGKT+ AR
Sbjct: 7 DTGQTQYQVLARKYRPETFADLVGQDAMVRTLKNAFETNRIAQAFIMTGIRGTGKTTTAR 66
Query: 462 IFARALNCQSLE---QP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNM 516
I A+ +NC + QP +PCG C C + G+ ++ E+ I +++D++
Sbjct: 67 IIAKGMNCIGPDGTGQPTTEPCGTCEHCTAIMEGRHVDVMEMDAASRTGVGDIREIIDSV 126
Query: 517 VTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576
++Y+I++ D+ LS +++A+ K ++ P V FI ++ + +P ++SRCQ
Sbjct: 127 QYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQ 186
Query: 577 KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQR 635
+F +++ +I ++ IA+ EG EI +DAL LI ++GS RDA L+Q +S
Sbjct: 187 RFDLRRIEPEVMIALMRKIATAEGAEIHEDALALITRAAEGSARDATSLLDQAISHGAGE 246
Query: 636 ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV 692
+ V+ ++GL +++DL+D+ L D + L G +PLA++ LA +
Sbjct: 247 TTADQVRAMLGLADRGRVLDLIDMILRGDAAGALSELGAQYAEGADPLAVLRDLAEI 303
>gi|224102151|ref|XP_002334208.1| predicted protein [Populus trichocarpa]
gi|222870040|gb|EEF07171.1| predicted protein [Populus trichocarpa]
Length = 180
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/173 (49%), Positives = 127/173 (73%)
Query: 541 WSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEG 600
W A K ++ P+RVVFI V++ D +P + SRCQK+ F K+KD DI+ L+ I+ +E
Sbjct: 2 WLAFLKFLEEPPQRVVFIFVTTDPDNVPRTVQSRCQKYLFNKIKDGDIVARLRKISKEEN 61
Query: 601 IEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLA 660
++++ AL LI+ +DGSLRDAE L+QLSLLG++I+ LV ELVG++SDEKL++LL+LA
Sbjct: 62 LDVELGALDLISLNADGSLRDAETMLDQLSLLGKKITTSLVNELVGVVSDEKLLELLELA 121
Query: 661 LSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFF 713
+S+DT TVK R +M++GV+P+ LMSQLA++I DI+AG+Y+ +H F
Sbjct: 122 MSSDTAETVKRARDLMDSGVDPMVLMSQLASLIMDIIAGTYNVVDAKHGDSLF 174
>gi|189423436|ref|YP_001950613.1| DNA polymerase III subunits gamma and tau [Geobacter lovleyi SZ]
gi|189419695|gb|ACD94093.1| DNA polymerase III, subunits gamma and tau [Geobacter lovleyi SZ]
Length = 551
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 174/337 (51%), Gaps = 8/337 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L +KY P+TF L GQ V++ L NA+ +V ++F G G GKTS ARI A+AL
Sbjct: 3 YEVLARKYRPQTFAGLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C C G S ++ E+ N + + +L DN S+Y+I
Sbjct: 63 NCEQGVTLEPCNVCPHCREITDGSSTDVFEIDGASNTGVDDVRELRDNSRYLPSHSRYKI 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS ++++A+ K ++ P V FI ++ LP I+SRCQ+F F ++
Sbjct: 123 YIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSRCQRFDFKRVPLIK 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L+ IA +EGI I+ AL LIA + DGS+RD+ +Q L+ G ++V V LVG
Sbjct: 183 IVGRLREIADQEGIVINDAALALIARKGDGSMRDSITCFDQVLAFCGNTVAVEDVATLVG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
++ L +L + DT ++ +R + G +L + ++L
Sbjct: 243 VVDRRLLAELSSAVFAGDTQGALEGVRRVDAFGYNVRQFTQELISHFRNLLV-------I 295
Query: 707 RHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMS 743
R K L++ E+E+LRQ S A+ Q R++
Sbjct: 296 RSVPKPGEILDLAEAELEELRQQAGEQSAADIQRRLT 332
>gi|325859977|ref|ZP_08173104.1| DNA polymerase III, subunit gamma and tau [Prevotella denticola
CRIS 18C-A]
gi|325482503|gb|EGC85509.1| DNA polymerase III, subunit gamma and tau [Prevotella denticola
CRIS 18C-A]
Length = 600
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 187/356 (52%), Gaps = 16/356 (4%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
KY P +F +VGQ + L NAV K+ Y+F GP G GKT+CARIFA+A+NC E
Sbjct: 10 KYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINC---E 66
Query: 474 QP----KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRI 527
P + C C SC + G+S NI E+ N E+I L++ T PP +Y++
Sbjct: 67 HPTVDGEACNECESCKAFAEGRSYNIFELDAASNNSVENIKSLMEQ--TRIPPQVGRYKV 124
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
F+ D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M +
Sbjct: 125 FIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPN 184
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
II L+ +A KE I+ +++AL +IA ++DG +RDA +Q + Q I+ V E +
Sbjct: 185 IISHLKNVAEKENIQYEEEALAIIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLN 244
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++ + +++ LAL + L ++ G + L++ LA+ + ++L A +
Sbjct: 245 VLDADNYFNIVSLALENKVNEIMVLLNDVLNKGFDGGHLVNGLASHVRNVLMAKDAQTLP 304
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ +++ ++ K L AL+ ++ + + R S++K + L+Q+A
Sbjct: 305 LLEVSQQQRLRYQEQAQKCPTRFLYNALQIMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|268608024|ref|ZP_06141754.1| DNA polymerase III subunits gamma and tau [Ruminococcus
flavefaciens FD-1]
Length = 539
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 144/258 (55%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L +K+ P TF D++ Q L N +M K Y+F G GTGKT+CARI A+A+
Sbjct: 2 YKALYRKWRPMTFDDVISQQQTTDTLKNQIMSGKTAHAYLFTGSRGTGKTTCARILAKAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++++ PC C+ C D G +I E+ N ++I DL D V + QY+I
Sbjct: 62 NCRNMKDGNPCLECDICRDADSGALTDIVEIDAASNNGVDNIRDLRDAAVYTPDRGQYKI 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K+++ P V FIL ++ + +P I+SRCQ+F F ++K D
Sbjct: 122 YIIDEVHMLSAGAFNALLKIMEEPPPYVKFILATTEIHKVPATILSRCQRFDFRRIKPED 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGL 647
I L++IA +E + + +IA +DG +RDA L++ S+ G+ I +V G+
Sbjct: 182 IAARLKYIAEQEELTLTDGGAAMIAKLADGGMRDAVSLLDRCSVGGEEIDEDVVSAAAGI 241
Query: 648 ISDEKLVDLLDLALSADT 665
+ L LL+ + DT
Sbjct: 242 AGRDYLFGLLEAINTGDT 259
>gi|157691309|ref|YP_001485771.1| DNA polymerase III subunits gamma and tau [Bacillus pumilus
SAFR-032]
gi|157680067|gb|ABV61211.1| DNA-directed DNA polymerase III gamma/tau subunits [Bacillus
pumilus SAFR-032]
Length = 570
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 159/291 (54%), Gaps = 1/291 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ + + L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQVFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C++C G ++ E+ N + I D+ D + + Y++
Sbjct: 63 NCEKSPVSEPCNECDACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P +FIL ++ +P IISRCQ+F F ++ D
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQRFDFKRITTKD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ +Q I E + + + +L++IAS +DG +RDA L+Q +S G+++++ + G
Sbjct: 183 IVGRMQKIVDAESLNVQEGSLEIIASAADGGMRDALSLLDQAISFSGEQLTIDDALLITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+S + + L + + + L +++ G + L+ + D+L
Sbjct: 243 AVSQQFISQLAEAIFDQNIAVALDTLNELLQQGKDAAKLIEDMIFYFRDML 293
>gi|404405906|ref|ZP_10997490.1| DNA polymerase III subunits gamma and tau [Alistipes sp. JC136]
Length = 368
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 183/354 (51%), Gaps = 11/354 (3%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P TF+ +VGQ + L NA+ R ++ Y+F GP G GKT+CARIFA+A+NC S
Sbjct: 9 RKYRPATFQSVVGQKHITSTLQNAIERGQLAHAYLFCGPRGVGKTTCARIFAKAINCLSP 68
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ C C SC S + G+S NI E+ N E I L++ + +Y +F+ D+
Sbjct: 69 NGAEACNECESCRSFNEGRSLNIHELDAASNNSVEDIRTLIEQVRIIPQVGRYSVFIIDE 128
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ P +FIL ++ + I+SRCQ + F +++ D + L
Sbjct: 129 VHMLSAAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIYDFNRIRVEDSVEYL 188
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDA-EMTLEQLSLLGQRISVPLVQELVGLISDE 651
++IA++EG+ D+++L LIA ++DG +RDA M + +S G + V + + ++ +
Sbjct: 189 RYIAAQEGVTADEESLNLIAQKADGGMRDALSMFDKAVSFCGTALDYRNVAQTLNVLDYD 248
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS-------YDFT 704
+ ++ L+ + V+ + ++ G M+ L + D+L + T
Sbjct: 249 TYFGVTEMLLAGNYVDALVTFDTVLSKGFSGQTFMAGLNRHMRDLLMARQPDTLRLIEMT 308
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R +R Q +E L A+ L+E + ++R S+++ + L++ A
Sbjct: 309 GTLLER--YRTQA-GACSVEFLFGAISILTELDGKIRQSSNQRLLVELGLMKTA 359
>gi|366089951|ref|ZP_09456317.1| DNA polymerase III subunits gamma and tau [Lactobacillus
acidipiscis KCTC 13900]
Length = 596
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/372 (28%), Positives = 193/372 (51%), Gaps = 17/372 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F DLVGQ LV + L NA+M ++ Y+F GP GTGKTS A+IF++A+
Sbjct: 3 YQALYRAWRPQKFDDLVGQELVTKTLKNALMTKQTSHAYLFTGPRGTGKTSAAKIFSKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C++C S G+ ++ E+ N E I D+ D + + Y+I
Sbjct: 63 NCHFQKDGEPCNECDTCTSITAGRQNDVIEIDAASNNGVEEIRDIRDKVKYAPTECDYKI 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ +P IISR Q+F F +++
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPENVVFILATTEPHKIPATIISRTQRFDFRRIQPDT 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I+ +Q+I S++ ++ + ALKLIA ++G +RDA L+Q+ G +++ + G
Sbjct: 183 ILQRMQYIVSQKQLKCEPAALKLIAKAAEGGMRDALSILDQVISFGNDEVTLDNALMVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA-------- 698
+ +++L+ L+ DT ++ L I+ G + + L + D+L
Sbjct: 243 SVQNDELLQYLEQVTQKDTAKALEILHQILNDGKDAARFIEDLISFCRDLLLYQQMPEKV 302
Query: 699 --GSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
+ D R + +P E++ Q + L+E ++ +R ++ +L ++
Sbjct: 303 ENDELNVVNDDFRNFSQKIKP------EEIYQMIDLLNEQQENMRFTSHASIYLEVLTVK 356
Query: 757 LAPDQQYVLPSS 768
LA Q + P +
Sbjct: 357 LATRQTTISPKT 368
>gi|291545138|emb|CBL18247.1| DNA polymerase III, subunits gamma and tau [Ruminococcus
champanellensis 18P13]
Length = 530
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 152/290 (52%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PRTF D++ Q + L N + K Y+F G GTGKT+CARIFA+A+
Sbjct: 2 YQALYRKWRPRTFDDVISQPHITTTLKNQIQSGKTAHAYLFTGSRGTGKTTCARIFAKAI 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC PC C C + +I E+ N + I +L D V + +Y++
Sbjct: 62 NCLHATDGNPCQQCEICRDAEAFSLSDIIEIDAASNNGVDDIRELRDGAVYTPERCKYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K+++ P V FIL ++ + +P I+SRCQ+F F ++ D
Sbjct: 122 YIIDEVHMLSQSAFNALLKIMEEPPAFVKFILATTEIHKVPATIVSRCQRFDFRRILPED 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGL 647
I L +IA +E + +D+ A +LIA SDG +RDA L+Q + I++ V G+
Sbjct: 182 ITARLLYIAGEEQLTLDEQAARLIARLSDGGMRDALSLLDQCAAYDSNITLDTVSAAAGI 241
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+ L DLLD +D V+ L + + L L +L + +++
Sbjct: 242 AGRDALFDLLDAMTQSDPAKAVRILDELYAKSKDMLRLCEELIAQLRNVM 291
>gi|299146823|ref|ZP_07039891.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 3_1_23]
gi|298517314|gb|EFI41195.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 3_1_23]
Length = 621
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 179/352 (50%), Gaps = 8/352 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS-L 472
KY P TF +VGQ + L NA+ +K+ Y+F GP G GKT+CARIFA+ +NC +
Sbjct: 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMTPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ C C SC++ + +S NI E+ N + I L++ + +Y++++ D+
Sbjct: 70 ADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDE 129
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ PR +FIL ++ + I+SRCQ + F ++ D + L
Sbjct: 130 VHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVNHL 189
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDE 651
++ASKEGI + +AL +IA ++DG +RDA +Q +S G I+ V + + ++ E
Sbjct: 190 SYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLDYE 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR-- 709
L D L + + I+ G + ++ L++ D+L G T
Sbjct: 250 YYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLEVG 309
Query: 710 ---RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R+ ++ Q K + L +A+K +E + R+S +K + L+Q+A
Sbjct: 310 ASIRQRYQEQA-QKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQVA 360
>gi|357060091|ref|ZP_09120865.1| hypothetical protein HMPREF9332_00422 [Alloprevotella rava F0323]
gi|355376981|gb|EHG24221.1| hypothetical protein HMPREF9332_00422 [Alloprevotella rava F0323]
Length = 583
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 186/354 (52%), Gaps = 10/354 (2%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P+TF +VGQ + L NA+ K+ Y+F GP G GKT+CARIFA+ +NC S
Sbjct: 9 RKYRPQTFDSVVGQKALTTTLKNAISNGKLAHAYLFCGPRGVGKTTCARIFAKTINCLSP 68
Query: 473 EQP-KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
+ + C C SC + + G+S NI E+ N + I +++ + T Y++F+ D
Sbjct: 69 QASGEACNECESCQAFNEGRSMNIFELDAASNNSVDDIRQIIEQVNTPPQVGTYKVFIID 128
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M+ ADI+
Sbjct: 129 EVHMLSAAAFNAFLKTLEEPPAHVIFILATTEKHKVLPTILSRCQIYDFNRMEIADIVAH 188
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLISD 650
L+ +A+KEG++ +++AL +IA ++DG +RDA +Q++ + I+ V E + ++
Sbjct: 189 LKNVAAKEGVQAEEEALNVIAQKADGGMRDALSIFDQVASFSEGDITYCKVIEDLNVLDY 248
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT------ 704
+ + D L+ + + I+ G + M LA+ ++L T
Sbjct: 249 DYYFKITDELLANNVTQVMLTFNDILRKGFDANIFMGGLASHFRELLVSQDAATLPLLEV 308
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
D R+++ ++ K + L +ALK ++ + R S +K + L+++A
Sbjct: 309 ADSVRQRYAKQAQKCKTKF--LYKALKLCNDCDINYRTSRNKRLTVEITLIEVA 360
>gi|313202632|ref|YP_004041289.1| DNA polymerase III subunit tau [Paludibacter propionicigenes WB4]
gi|312441948|gb|ADQ78304.1| DNA polymerase III, tau subunit [Paludibacter propionicigenes WB4]
Length = 584
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/354 (29%), Positives = 177/354 (50%), Gaps = 12/354 (3%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
KY P TF +VGQ+ + L NA+ + Y+F GP G GKT+CARIFA+ +NCQ+L
Sbjct: 10 KYRPSTFNSVVGQSSLTVTLKNAIKSNHLAHAYLFCGPRGVGKTTCARIFAKTINCQNLT 69
Query: 474 QP-KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ C C SC+S + +S NI E+ N + I L D + +Y +++ D+
Sbjct: 70 SDFEACNECESCVSFNEQRSYNIHELDAASNNGVDDIRSLTDQVRIPPQIGKYSVYIIDE 129
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ P +FIL ++ + I+SRCQ + F ++ AD + L
Sbjct: 130 VHMLSQGAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIYDFNRITVADTVKHL 189
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVGLISDE 651
Q +A KEG+ +D + L ++A +SDG +RDA +QL S G I+ V E + ++ E
Sbjct: 190 QMVAEKEGVTVDVNGLNVVAQKSDGGMRDALSIFDQLVSFCGNNITYQGVIENLNVLDYE 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS-------YDFT 704
L++ L D ++ ++ G + ++ L++ + D+L +
Sbjct: 250 YYFKLVEAFLKGDVSQSLLLFNEVLNKGFDAHHFITGLSSHLRDVLVSKDPQTISLLEVG 309
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
D R + Q S + L QALK ++ + R S +K + AL++L
Sbjct: 310 ADIGERYKTQAQNCSP---DFLFQALKISNDCDIDYRQSKNKRLLVELALIRLC 360
>gi|383113504|ref|ZP_09934276.1| DNA polymerase III, subunit gamma and tau [Bacteroides sp. D2]
gi|313695672|gb|EFS32507.1| DNA polymerase III, subunit gamma and tau [Bacteroides sp. D2]
Length = 621
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 179/352 (50%), Gaps = 8/352 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS-L 472
KY P TF +VGQ + L NA+ +K+ Y+F GP G GKT+CARIFA+ +NC +
Sbjct: 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMTPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ C C SC++ + +S NI E+ N + I L++ + +Y++++ D+
Sbjct: 70 ADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDE 129
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ PR +FIL ++ + I+SRCQ + F ++ D + L
Sbjct: 130 VHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVNHL 189
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDE 651
++ASKEGI + +AL +IA ++DG +RDA +Q +S G I+ V + + ++ E
Sbjct: 190 SYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLDYE 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR-- 709
L D L + + I+ G + ++ L++ D+L G T
Sbjct: 250 YYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLEVG 309
Query: 710 ---RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R+ ++ Q K + L +A+K +E + R+S +K + L+Q+A
Sbjct: 310 ASIRQRYQEQA-QKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQVA 360
>gi|84500405|ref|ZP_00998654.1| DNA polymerase III subunits gamma and tau [Oceanicola batsensis
HTCC2597]
gi|84391358|gb|EAQ03690.1| DNA polymerase III subunits gamma and tau [Oceanicola batsensis
HTCC2597]
Length = 581
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 156/291 (53%), Gaps = 6/291 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY P TF DLVGQ+ + + L NA ++ ++ G GTGKT+ ARI A+ +
Sbjct: 8 YQVLARKYRPETFADLVGQDAMVRTLRNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGM 67
Query: 468 NC-----QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP 522
NC Q PCG C C++ G+ ++ E+ N I +++D++
Sbjct: 68 NCIGPDGQGGPTTDPCGKCEHCVAIMEGRHVDVMEMDAASNTSVNDIREIIDSVHYRAAS 127
Query: 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPK 582
++Y+I++ D+ LS +++A+ K ++ P V FI ++ + +P ++SRCQ+F +
Sbjct: 128 ARYKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDLRR 187
Query: 583 MKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLV 641
++ +I L+ IA +EG EI DAL LI ++GS RDA L+Q +S + V
Sbjct: 188 IEPEVMIDLLREIADREGAEIADDALALITRAAEGSARDATSLLDQAISHGAGETTADQV 247
Query: 642 QELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV 692
+ ++GL +++DL ++ + D + L G +PLA++ LA +
Sbjct: 248 RAMLGLADRGRVMDLFEMVMRGDAAAALTELSAQYADGADPLAVLRDLAEI 298
>gi|410454768|ref|ZP_11308677.1| DNA polymerase III subunits gamma and tau [Bacillus bataviensis LMG
21833]
gi|409930030|gb|EKN67056.1| DNA polymerase III subunits gamma and tau [Bacillus bataviensis LMG
21833]
Length = 562
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 191/356 (53%), Gaps = 7/356 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+TF D+VGQ V + L NA++++K+ Y+F GP GTGKTS A+I A+A+
Sbjct: 3 YQALYRVWRPQTFIDVVGQEHVTKTLQNALLQQKISHAYLFSGPRGTGKTSAAKILAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C+ G ++ E N E + D+LD + + Y++
Sbjct: 63 NCERSPVSEPCNECAACLGITNGTIPDVLEFDAASNSRVEEMRDVLDKVKFAPTSVNYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F ++
Sbjct: 123 YIIDEVHMLSISAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRCQRFDFRRITAGS 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ ++ I + GI+ D AL++IA ++G +RDA L+Q +S R++V + G
Sbjct: 183 IVNRMKLIVEETGIDCDDRALQMIARAAEGGMRDALSLLDQAISYSQDRVTVEDALTVTG 242
Query: 647 LISDEKLVDLLDLAL-SADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSY 701
+S + ++ L LA D + ++ L ++ G +P + L D+L A +
Sbjct: 243 SVS-QGFLNKLALAFQEGDVASGLEALDELLFHGKDPTRFIEDLILFYRDMLLYKTAPNL 301
Query: 702 DFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ + +R RQ ++ Q + L++ ++++R +N +L A+++L
Sbjct: 302 EESLERVMLDDEFRQMAEITPTGQIYQLIDLLNKTQQEMRWTNHPRVFLEVAIVKL 357
>gi|418686630|ref|ZP_13247795.1| DNA polymerase III, subunit gamma and tau [Leptospira kirschneri
serovar Grippotyphosa str. Moskva]
gi|410738701|gb|EKQ83434.1| DNA polymerase III, subunit gamma and tau [Leptospira kirschneri
serovar Grippotyphosa str. Moskva]
Length = 480
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 154/275 (56%), Gaps = 11/275 (4%)
Query: 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFAR 465
G H+ L++KY P+ F+D++ Q+L AL NA+ K+G Y+F+GP G GKT+ ARI A+
Sbjct: 3 GTHEVLSRKYRPQKFQDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAK 62
Query: 466 ALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
LNCQ+ +PC CNSC RG S ++ E+ N E+I +L DN+ + +Y
Sbjct: 63 RLNCQNPTDNEPCNECNSCKEITRGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ L+ S++A+ K ++ P +VF+L ++ +P I+SRCQ F F K+
Sbjct: 123 KVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFVLATTEFHKIPETILSRCQDFIFKKVP- 181
Query: 586 ADIIYTLQWIASK----EGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPL 640
++ LQ + K E ++ D++ L IA + DGS+RD +EQ + R+
Sbjct: 182 ---LFVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIIFTDSRLLGAA 238
Query: 641 VQELVGLISDEKLVDLLDLALSADTVNTVKNLRVI 675
+++++G E L + + D N K+L +I
Sbjct: 239 IRKMIGYHGIEFLTSFIKSLVDPD--NHSKSLEII 271
>gi|293372713|ref|ZP_06619095.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD
CMC 3f]
gi|292632522|gb|EFF51118.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD
CMC 3f]
Length = 621
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 179/352 (50%), Gaps = 8/352 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS-L 472
KY P TF +VGQ + L NA+ +K+ Y+F GP G GKT+CARIFA+ +NC +
Sbjct: 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMTPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ C C SC++ + +S NI E+ N + I L++ + +Y++++ D+
Sbjct: 70 ADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDE 129
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ PR +FIL ++ + I+SRCQ + F ++ D + L
Sbjct: 130 VHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVNHL 189
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDE 651
++ASKEGI + +AL +IA ++DG +RDA +Q +S G I+ V + + ++ E
Sbjct: 190 SYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLDYE 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR-- 709
L D L + + I+ G + ++ L++ D+L G T
Sbjct: 250 YYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLEVG 309
Query: 710 ---RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R+ ++ Q K + L +A+K +E + R+S +K + L+Q+A
Sbjct: 310 ASIRQRYQEQA-QKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQVA 360
>gi|254464305|ref|ZP_05077716.1| DNA polymerase III, tau subunit [Rhodobacterales bacterium Y4I]
gi|206685213|gb|EDZ45695.1| DNA polymerase III, tau subunit [Rhodobacterales bacterium Y4I]
Length = 601
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 158/298 (53%), Gaps = 6/298 (2%)
Query: 401 GDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCA 460
G N ++Q L +KY P TF DLVGQ+ + + L NA ++ ++ G GTGKT+ A
Sbjct: 10 GGNGQSQYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTA 69
Query: 461 RIFARALNC-----QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDN 515
RI A+ +NC Q PCG C C + G+ ++ E+ I +++D+
Sbjct: 70 RIIAKGMNCVGEDGQGGPTTDPCGKCEHCTAIMEGRHVDVMEMDAASRTGVNDIREIIDS 129
Query: 516 MVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRC 575
+ ++Y+I++ D+ LS +++A+ K ++ P V FI ++ + +P ++SRC
Sbjct: 130 VQYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRC 189
Query: 576 QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQ 634
Q+F +++ +I L+ IA+ EG +I DAL LI ++GS RDA L+Q +S
Sbjct: 190 QRFDLRRIEPEVMISLLRKIATAEGAQIADDALALITRAAEGSARDATSLLDQAISHGAG 249
Query: 635 RISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV 692
+ V+ ++GL +++DL+D+ L D + L G +PLA++ LA +
Sbjct: 250 ETTADQVRAMLGLADRGRVLDLMDMILRGDAAAALTELSAQYAEGADPLAVLRDLAEI 307
>gi|160946877|ref|ZP_02094080.1| hypothetical protein PEPMIC_00838 [Parvimonas micra ATCC 33270]
gi|158447261|gb|EDP24256.1| DNA polymerase III, subunit gamma and tau [Parvimonas micra ATCC
33270]
Length = 540
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 191/356 (53%), Gaps = 31/356 (8%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q + +++ P+ F +VGQ + + L N + +G Y+F G GTGKTSCA+IFARA+N
Sbjct: 5 QAIYREFRPKDFTRVVGQAHIVEILKNQIRTGNLGHAYLFSGIRGTGKTSCAKIFARAVN 64
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
C + PC C +C K+ + E+ N + I +L + ++ +Y+++
Sbjct: 65 CLNPIDGNPCNECENCKMILEDKALEVVEMDAASNRRIDDIRELKEKVIYPPQIVKYKVY 124
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ ++ + ++A+ K+++ P+ ++FIL ++ +D LP IISRCQ+F F ++ ++DI
Sbjct: 125 IIDEAHMITNEGFNALLKILEEPPKHLIFILATTEIDKLPDTIISRCQRFEFKRINNSDI 184
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVGL 647
+ + ++ + +EI++D + LI+ S G++RDA L+Q+ G ++I++ + E +GL
Sbjct: 185 VENINYVLNNLNVEIEEDGINLISELSSGAMRDALSLLDQVVATGKEKITIEDINECLGL 244
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR 707
++ L +L L++ T++ R +++ G P +I D++
Sbjct: 245 VNLNMLFELSQSILNSSKNETIETFRNLVKNGKTP-------HNIIIDLI---------- 287
Query: 708 HRRKFFRRQPLSKEEMEKLRQALKTLSEAE--KQLRMSN----DKLTWLTAALLQL 757
K FR L K +++ L TL++ E + L SN D+L ++ LL +
Sbjct: 288 ---KHFRNIILVK----SIKKELTTLNDVEYKRYLEHSNKFEMDELIFILENLLDV 336
>gi|418166477|ref|ZP_12803133.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA17971]
gi|353830073|gb|EHE10203.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA17971]
Length = 551
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|147676386|ref|YP_001210601.1| DNA polymerase III, gamma/tau subunits [Pelotomaculum
thermopropionicum SI]
gi|146272483|dbj|BAF58232.1| DNA polymerase III, gamma/tau subunits [Pelotomaculum
thermopropionicum SI]
Length = 558
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 160/275 (58%), Gaps = 4/275 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L +++ PRTF +++GQ + + L NAV +VG Y+F G GTGKT+ A++ A+AL
Sbjct: 3 YLALYREWRPRTFGEIIGQEHITRTLKNAVEAGRVGHAYIFCGARGTGKTTAAKVLAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC E +PC C SC + + G S ++ E+ N + I DL + + + +YR+
Sbjct: 63 NCTGREGAEPCNRCESCRAVNEGISVDVIEIDAASNRGIDEIRDLREKIRFAPAAGRYRV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ PR V IL ++ +P I+SRCQ+F F ++ AD
Sbjct: 123 YIIDEVHMLTSEAFNALLKTLEEPPRHAVLILATTEPHRVPLTILSRCQRFDFRRIIPAD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELVG 646
II L+ +A+ +E++++AL+LIA ++G LRDA L+Q + G +++ V +++G
Sbjct: 183 IIKRLKEVAAGARLEVEEEALRLIARAAEGGLRDALSILDQAAAFGGMKVTEAGVHQILG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVE 681
+ + L D + L+A + LR++ E E
Sbjct: 243 TVRTDAL-DRMAGCLAAGEAG--RALRLVSELAGE 274
>gi|15900748|ref|NP_345352.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
TIGR4]
gi|111657220|ref|ZP_01407992.1| hypothetical protein SpneT_02001572 [Streptococcus pneumoniae
TIGR4]
gi|419495184|ref|ZP_14034902.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA47461]
gi|421242816|ref|ZP_15699337.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2081074]
gi|421247124|ref|ZP_15703611.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2082170]
gi|421303088|ref|ZP_15753752.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA17484]
gi|14972337|gb|AAK74992.1| DNA polymerase III, gamma and tau subunits [Streptococcus
pneumoniae TIGR4]
gi|379595266|gb|EHZ60074.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA47461]
gi|395609515|gb|EJG69601.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2081074]
gi|395614760|gb|EJG74778.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2082170]
gi|395901710|gb|EJH12646.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA17484]
Length = 551
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGAN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|160902859|ref|YP_001568440.1| DNA polymerase III subunits gamma and tau [Petrotoga mobilis SJ95]
gi|160360503|gb|ABX32117.1| DNA polymerase III, subunits gamma and tau [Petrotoga mobilis SJ95]
Length = 467
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 174/312 (55%), Gaps = 13/312 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ NL +KY P+ F +++GQ V + NA+ +++V Y+F GP GTGKT+ ARI A+ L
Sbjct: 2 NNNLYRKYRPKDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVL 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + PC C +C+S + ++ E+ N + I ++ D+ +Y++
Sbjct: 62 NCKDPQGYNPCNKCENCVSINNNSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+FIL +++L+ +P IISR Q F + +
Sbjct: 122 YIIDEFHMLTREAFNALLKTLEEPPSHVIFILATTNLEKVPDTIISRAQIINFKNLGQNE 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I+ L+ IAS EGIE + DAL++IA R+ G +RDA LEQ+ G+ +I+ +++G
Sbjct: 182 IVEGLKNIASSEGIEYELDALEIIAKRAKGGMRDAISMLEQVEKFGEKKITHQDTLDILG 241
Query: 647 LISDEKLVDLLD----------LALSADTVNTVKNLRVIMETGVEPL--ALMSQLATVIT 694
L + +V ++ LA S D N K+ +++E +E + +L+++ + +
Sbjct: 242 LFDENFIVQFIENVYNSKIDEFLAQSEDLFNLGKDPEILLEQSIEYIFDSLINEKRSNLI 301
Query: 695 DILAGSYDFTKD 706
++ D KD
Sbjct: 302 HLMGTFNDILKD 313
>gi|419532092|ref|ZP_14071610.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA47794]
gi|421274766|ref|ZP_15725598.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA52612]
gi|379608848|gb|EHZ73593.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA47794]
gi|395875494|gb|EJG86575.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA52612]
Length = 551
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|158321874|ref|YP_001514381.1| DNA polymerase III subunits gamma and tau [Alkaliphilus oremlandii
OhILAs]
gi|158142073|gb|ABW20385.1| DNA polymerase III, subunits gamma and tau [Alkaliphilus oremlandii
OhILAs]
Length = 563
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/359 (29%), Positives = 187/359 (52%), Gaps = 10/359 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L +++ P+ F D++GQ+ V L N + + Y+F G GTGKTS A+IFARA+
Sbjct: 3 YKALYRRFRPKVFEDVIGQDQVITILKNQISSSNIAHAYLFTGTRGTGKTSTAKIFARAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ--Y 525
NC S E PC C C ++ E+ N +++ ++ +N+ PPS+ Y
Sbjct: 63 NCLSAEDANPCNQCEVCEGILTENIMDVIEIDAASNNGVDNVREIRENV--KYPPSKGKY 120
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+I++ D+ LS +++A+ K ++ P V+FIL ++ +P I+SRCQ+F F ++
Sbjct: 121 KIYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRFDFKPVRI 180
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQEL 644
DI+ L+ I GI+ +++AL+LIA SDG+LRDA LEQ +S ++ V +
Sbjct: 181 NDIMKRLESICEDIGIKTEEEALRLIALNSDGALRDALSILEQCISYTEDTLTYTNVVNI 240
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT 704
+G+++ E + DL+D + DT + + + I+ G + LM + + IL +
Sbjct: 241 LGMVNYEFIFDLVDKIAAKDTSSVLTLINDILMEGKDAGILMKDIISHFRSILLAKMNVQ 300
Query: 705 KDR-----HRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
D R+ RQ + + ++ + LS+ E +L+ S T + ++ L
Sbjct: 301 LDELLTLPEERQDRLRQQGALFTINQITSFIYNLSDIESKLKYSAQPKTLIEIGIVGLC 359
>gi|423297338|ref|ZP_17275399.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus
CL03T12C18]
gi|392667515|gb|EIY61023.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus
CL03T12C18]
Length = 621
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 179/352 (50%), Gaps = 8/352 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS-L 472
KY P TF +VGQ + L NA+ +K+ Y+F GP G GKT+CARIFA+ +NC +
Sbjct: 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMTPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ C C SC++ + +S NI E+ N + I L++ + +Y++++ D+
Sbjct: 70 ADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDE 129
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ PR +FIL ++ + I+SRCQ + F ++ D + L
Sbjct: 130 VHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVNHL 189
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDE 651
++ASKEGI + +AL +IA ++DG +RDA +Q +S G I+ V + + ++ E
Sbjct: 190 SYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLDYE 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR-- 709
L D L + + I+ G + ++ L++ D+L G T
Sbjct: 250 YYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLEVG 309
Query: 710 ---RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R+ ++ Q K + L +A+K +E + R+S +K + L+Q+A
Sbjct: 310 ASIRQSYQEQA-QKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQVA 360
>gi|419481883|ref|ZP_14021676.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA40563]
gi|379580757|gb|EHZ45646.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA40563]
Length = 551
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSTLDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|365134810|ref|ZP_09343423.1| DNA polymerase III, subunit gamma and tau [Subdoligranulum sp.
4_3_54A2FAA]
gi|363613435|gb|EHL64950.1| DNA polymerase III, subunit gamma and tau [Subdoligranulum sp.
4_3_54A2FAA]
Length = 568
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/372 (30%), Positives = 187/372 (50%), Gaps = 12/372 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L +K+ P TF D+VGQ + AL N ++ KVG Y+F G GTGKT+CA+IFA+A+
Sbjct: 2 YRALYRKWRPATFEDVVGQAGITTALKNQILHDKVGHAYIFTGTRGTGKTTCAKIFAKAV 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NCQS PCG C C D G ++ E+ N ++I DL D + Y++
Sbjct: 62 NCQSRNGADPCGQCPVCTGIDDGSVMDVVEIDAASNNGVDNIRDLRDETAYTPSVCTYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K+++ P V+FIL ++ + +P I+SRCQ++ F ++ D
Sbjct: 122 YIIDEVHMLSTAAFNALLKIMEEPPSHVIFILATTEIHKVPATILSRCQRYDFTRIAPQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGL 647
I L ++A +E IE+ DA LIA +DG++RDA L+ + + ++ +V+ + G+
Sbjct: 182 IEGRLLYVAGQEKIELTPDAAGLIARLADGAMRDALSILDTCAGVTNQVDADVVRRMAGV 241
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-------AGS 700
L DL D ++ + + E ++ L ++ ++L G
Sbjct: 242 TDKSYLFDLAGAVARQDAAGALRLVAELREKSIDIKRLCDEMILHYRNLLLAGMSGGQGL 301
Query: 701 YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL--- 757
RK+ P + + +R A+K L A ++ D L AL +L
Sbjct: 302 LVGVSPEEERKYLEAAP-EVPQNDAVR-AIKILCGALDKMGKGTDARIELEVALFKLCED 359
Query: 758 APDQQYVLPSSS 769
APD Q V P S
Sbjct: 360 APDIQTVHPVVS 371
>gi|401564608|ref|ZP_10805488.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. FOBRC6]
gi|400188653|gb|EJO22802.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. FOBRC6]
Length = 612
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 187/347 (53%), Gaps = 17/347 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L +++ P TF DLVGQ +++ L+ AV + Y+F GP GTGKTS A+I ARAL
Sbjct: 3 YVALYRRWRPETFADLVGQEHISRTLARAVTSGQTSHAYLFTGPRGTGKTSTAKILARAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC PCG C+SC + G S ++ E+ N + I DL +++ + +Y+I
Sbjct: 63 NCAEGPTLTPCGVCDSCRAISDGSSMDVFEIDAASNRGIDEIRDLRESVKFAPTEGRYKI 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P RV+FIL ++ +P I SRCQ++ F ++ +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPDRVLFILATTEPHKVPATIQSRCQRYDFHRITVTE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I L + ++ GI D+DAL +IA ++DG +RDA L+Q + L + ++ VQE +G
Sbjct: 183 IRDRLVHVCAESGIAADEDALGIIAVQADGGMRDALSILDQCTALAEGTLTAERVQEALG 242
Query: 647 LISD---EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA----- 698
L+ EK+ L +A A + L +++ G E ++++LA ++
Sbjct: 243 LVGRAWIEKMA--LQIADRA-AAPLITQLGELLQNGRELRQILAELAQYFRSLMIVGVGG 299
Query: 699 --GSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMS 743
GS + + ++EE+ + L+ L+EA +++R+S
Sbjct: 300 TLGSAELPDGQAEALREAAARFTQEEIMVI---LRKLNEAMQEIRVS 343
>gi|421307625|ref|ZP_15758268.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA60132]
gi|395907538|gb|EJH18429.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA60132]
Length = 551
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYTPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|387788457|ref|YP_006253525.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
ST556]
gi|379138199|gb|AFC94990.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
ST556]
Length = 551
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTTISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTNLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|148993679|ref|ZP_01823126.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
SP9-BS68]
gi|168490300|ref|ZP_02714499.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
SP195]
gi|303255298|ref|ZP_07341369.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
BS455]
gi|303260384|ref|ZP_07346353.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
SP-BS293]
gi|303262741|ref|ZP_07348679.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
SP14-BS292]
gi|303265030|ref|ZP_07350944.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
BS397]
gi|303267140|ref|ZP_07353009.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
BS457]
gi|303269364|ref|ZP_07355135.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
BS458]
gi|387759100|ref|YP_006066078.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
INV200]
gi|417678817|ref|ZP_12328214.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA17570]
gi|418125475|ref|ZP_12762389.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA44511]
gi|418139174|ref|ZP_12776005.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA13338]
gi|418161911|ref|ZP_12798600.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA17328]
gi|418191412|ref|ZP_12827916.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47388]
gi|418199984|ref|ZP_12836429.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47976]
gi|418214036|ref|ZP_12840771.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA54644]
gi|418234057|ref|ZP_12860637.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA08780]
gi|419484271|ref|ZP_14024047.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA43257]
gi|419507929|ref|ZP_14047583.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA49542]
gi|419514414|ref|ZP_14054042.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
England14-9]
gi|421220016|ref|ZP_15676869.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2070425]
gi|421222341|ref|ZP_15679133.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2070531]
gi|421278629|ref|ZP_15729439.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA17301]
gi|421294387|ref|ZP_15745110.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA56113]
gi|421297464|ref|ZP_15748167.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA58581]
gi|421300715|ref|ZP_15751386.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA19998]
gi|147927759|gb|EDK78782.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
SP9-BS68]
gi|183571341|gb|EDT91869.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
SP195]
gi|301801689|emb|CBW34395.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
INV200]
gi|302597767|gb|EFL64842.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
BS455]
gi|302636063|gb|EFL66560.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
SP14-BS292]
gi|302638419|gb|EFL68885.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
SP-BS293]
gi|302641082|gb|EFL71458.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
BS458]
gi|302643348|gb|EFL73626.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
BS457]
gi|302645390|gb|EFL75623.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
BS397]
gi|332073196|gb|EGI83675.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA17570]
gi|353798819|gb|EHD79143.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA44511]
gi|353829031|gb|EHE09166.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA17328]
gi|353857313|gb|EHE37276.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47388]
gi|353865031|gb|EHE44940.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47976]
gi|353871319|gb|EHE51190.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA54644]
gi|353889496|gb|EHE69267.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA08780]
gi|353906011|gb|EHE81427.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA13338]
gi|379583782|gb|EHZ48659.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA43257]
gi|379612774|gb|EHZ77491.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA49542]
gi|379638904|gb|EIA03449.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
England14-9]
gi|395588829|gb|EJG49154.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2070531]
gi|395589187|gb|EJG49508.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2070425]
gi|395882001|gb|EJG93049.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA17301]
gi|395893038|gb|EJH04028.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA58581]
gi|395894677|gb|EJH05657.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA56113]
gi|395900139|gb|EJH11078.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA19998]
Length = 551
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYTPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|169833967|ref|YP_001694317.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
Hungary19A-6]
gi|168996469|gb|ACA37081.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
Hungary19A-6]
Length = 551
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 175/337 (51%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y+I
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKI 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVNLADIKSSLQ 338
>gi|335047882|ref|ZP_08540902.1| DNA polymerase III, subunit gamma and tau [Parvimonas sp. oral
taxon 110 str. F0139]
gi|333757682|gb|EGL35240.1| DNA polymerase III, subunit gamma and tau [Parvimonas sp. oral
taxon 110 str. F0139]
Length = 543
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 191/356 (53%), Gaps = 31/356 (8%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q + +++ P+ F +VGQ + + L N + +G Y+F G GTGKTSCA+IFARA+N
Sbjct: 3 QAIYREFRPKDFTRVVGQAHIVEILKNQIRTGNLGHAYLFSGIRGTGKTSCAKIFARAVN 62
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
C + PC C +C K+ + E+ N + I +L + ++ +Y+++
Sbjct: 63 CLNPIDGNPCNECENCKMILEDKALEVVEMDAASNRRIDDIRELKEKVIYPPQIVKYKVY 122
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ ++ + ++A+ K+++ P+ ++FIL ++ +D LP IISRCQ+F F ++ ++DI
Sbjct: 123 IIDEAHMITNEGFNALLKILEEPPKHLIFILATTEIDKLPDTIISRCQRFEFKRINNSDI 182
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGL 647
+ + ++ + +EI++D + LI+ S G++RDA L+Q+ G+ +I++ + E +GL
Sbjct: 183 VENINYVLNNLNVEIEEDGINLISELSSGAMRDALSLLDQVVATGKDKITIDDINECLGL 242
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR 707
++ L +L L++ T++ R +++ G P +I D++
Sbjct: 243 VNLNMLFELSKSILNSSKNETIETFRNLVKNGKTP-------HNIIIDLI---------- 285
Query: 708 HRRKFFRRQPLSKEEMEKLRQALKTLSEAE--KQLRMSN----DKLTWLTAALLQL 757
K FR L K +++ L TL++ E + L SN D+L ++ LL +
Sbjct: 286 ---KHFRNIILVK----SIKKELTTLNDVEYKRYLEHSNKFEMDELIFILENLLDV 334
>gi|28209849|ref|NP_780793.1| DNA polymerase III subunits gamma and tau [Clostridium tetani E88]
gi|28202284|gb|AAO34730.1| DNA polymerase III subunits gamma and tau [Clostridium tetani E88]
Length = 552
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 185/357 (51%), Gaps = 6/357 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L +++ P TF D++GQ + L N + ++ Y+F G GTGKTS A+I A+A+
Sbjct: 6 YTALYREWRPSTFEDVIGQKHITITLKNQIKNERIAHAYLFCGTRGTGKTSTAKILAKAV 65
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC L +PC C C + +I+E+ N ++I +++ + ++Y++
Sbjct: 66 NCLDLRDGEPCNECEICKKINSNMLIDIEELDAASNNSVDNIRSIIEEVYYPPREAKYKV 125
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS + +A K ++ P V+FIL ++ LP I+SRCQ+F F ++K D
Sbjct: 126 YIMDEVHMLSTGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFKRIKSED 185
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I L++I +++G D ++L+LI+ SDG++RDA L+Q+ G R+ V ++G
Sbjct: 186 IFQRLRFIITQQGFFADDNSLRLISRISDGAMRDALGVLDQVISTGNGRVEYEDVVSILG 245
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLA-----TVITDILAGSY 701
LI++E L+ L D + D VK + ++ +G + ++ L +I + Y
Sbjct: 246 LITNENLIKLTDSIIKKDIEECVKIIEEVIFSGKDSNNIIKDLILHMRNLLIIKVSQNPY 305
Query: 702 DFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ ++ K +E++ + ++ L EAE+Q + +L A++++
Sbjct: 306 EVLDMSEENIALLKEQSEKVRVEEIMRFIRILQEAEEQSKWVKQSRVYLELAIIKMC 362
>gi|225861242|ref|YP_002742751.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
Taiwan19F-14]
gi|298229159|ref|ZP_06962840.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
str. Canada MDR_19F]
gi|298255733|ref|ZP_06979319.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
str. Canada MDR_19A]
gi|298503129|ref|YP_003725069.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
gi|418082790|ref|ZP_12719991.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA44288]
gi|418084936|ref|ZP_12722120.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47281]
gi|418100695|ref|ZP_12737781.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 7286-06]
gi|418118844|ref|ZP_12755801.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA18523]
gi|418141456|ref|ZP_12778269.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA13455]
gi|418150330|ref|ZP_12787082.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA14798]
gi|418152598|ref|ZP_12789338.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA16121]
gi|418157676|ref|ZP_12794392.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA16833]
gi|418164198|ref|ZP_12800872.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA17371]
gi|418171538|ref|ZP_12808162.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA19451]
gi|418195899|ref|ZP_12832378.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47688]
gi|418197688|ref|ZP_12834152.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47778]
gi|418223603|ref|ZP_12850243.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 5185-06]
gi|419424890|ref|ZP_13965089.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
7533-05]
gi|419427467|ref|ZP_13967648.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
5652-06]
gi|419429604|ref|ZP_13969768.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA11856]
gi|419435733|ref|ZP_13975827.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
8190-05]
gi|419437814|ref|ZP_13977885.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA13499]
gi|419444914|ref|ZP_13984929.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA19923]
gi|419447058|ref|ZP_13987063.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
7879-04]
gi|419448505|ref|ZP_13988502.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
4075-00]
gi|419451206|ref|ZP_13991192.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
EU-NP02]
gi|419501596|ref|ZP_14041282.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA47628]
gi|419518661|ref|ZP_14058268.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA08825]
gi|419527738|ref|ZP_14067281.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA17719]
gi|421287583|ref|ZP_15738348.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA58771]
gi|225728151|gb|ACO24002.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238724|gb|ADI69855.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
gi|353756703|gb|EHD37302.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA44288]
gi|353758631|gb|EHD39219.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47281]
gi|353772631|gb|EHD53136.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 7286-06]
gi|353790796|gb|EHD71177.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA18523]
gi|353805707|gb|EHD85981.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA13455]
gi|353816096|gb|EHD96306.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA14798]
gi|353819243|gb|EHD99441.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA16121]
gi|353824124|gb|EHE04298.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA16833]
gi|353832525|gb|EHE12643.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA17371]
gi|353835275|gb|EHE15369.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA19451]
gi|353861350|gb|EHE41287.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47688]
gi|353864439|gb|EHE44355.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47778]
gi|353878401|gb|EHE58231.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 5185-06]
gi|379539777|gb|EHZ04955.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA13499]
gi|379549782|gb|EHZ14884.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA11856]
gi|379565891|gb|EHZ30882.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA17719]
gi|379572607|gb|EHZ37564.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA19923]
gi|379601957|gb|EHZ66729.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA47628]
gi|379614598|gb|EHZ79308.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
7879-04]
gi|379616269|gb|EHZ80968.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
8190-05]
gi|379617660|gb|EHZ82340.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
5652-06]
gi|379620219|gb|EHZ84878.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
7533-05]
gi|379622911|gb|EHZ87545.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
EU-NP02]
gi|379623563|gb|EHZ88196.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
4075-00]
gi|379641640|gb|EIA06175.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA08825]
gi|395888195|gb|EJG99207.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA58771]
Length = 551
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTTISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTNLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|153941061|ref|YP_001389393.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum F
str. Langeland]
gi|384460484|ref|YP_005673079.1| DNA polymerase III subunits gamma/tau [Clostridium botulinum F str.
230613]
gi|152936957|gb|ABS42455.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum F
str. Langeland]
gi|295317501|gb|ADF97878.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum F
str. 230613]
Length = 541
Score = 167 bits (423), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 192/356 (53%), Gaps = 10/356 (2%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ PRTF+++VGQ + L N V+ +++ Y+F G GTGKTS A+I ++A+NC
Sbjct: 6 LYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNCL 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ--YRIF 528
+ + +PC C C + G ++ E+ E I ++++N+ PP + +++
Sbjct: 66 NPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENV--KYPPQEGKNKVY 123
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ L+ ++ +A K ++ P V+FIL ++ LP I+SRCQ+F F ++++ +I
Sbjct: 124 IMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIRNEEI 183
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGL 647
L+ I S++GI D +L LIA SDG++RDA L+Q+ G ++ V +++GL
Sbjct: 184 FERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDMLGL 243
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR 707
+++E L+ + D + D +++ + I+ +G + + + T + +IL +
Sbjct: 244 VTNENLLRITDSIIEKDVEKSMRIIEDIVLSGKDIYNFIKDMITHLRNILMVKVSKNPNE 303
Query: 708 HRRKFFRRQPLSKEEMEKLR-----QALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
L KE+ EK+R + +K L EAE+Q + +L A+L++
Sbjct: 304 ILDMSSENIDLVKEQSEKIRIEEIMRNIKILQEAEQQSKWVKQNRIYLELAVLKMC 359
>gi|168484747|ref|ZP_02709692.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
CDC1873-00]
gi|417696024|ref|ZP_12345204.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47368]
gi|418091484|ref|ZP_12728628.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA44452]
gi|418108358|ref|ZP_12745394.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA41410]
gi|418111263|ref|ZP_12748275.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA49447]
gi|418148290|ref|ZP_12785055.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA13856]
gi|418168960|ref|ZP_12805604.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA19077]
gi|418175676|ref|ZP_12812273.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA41437]
gi|418218605|ref|ZP_12845272.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae NP127]
gi|418220786|ref|ZP_12847442.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47751]
gi|418238439|ref|ZP_12864994.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae NorthCarolina6A-23]
gi|419422015|ref|ZP_13962234.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA43264]
gi|419459713|ref|ZP_13999646.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA02270]
gi|419462022|ref|ZP_14001935.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA02714]
gi|419488779|ref|ZP_14028530.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA44386]
gi|419525611|ref|ZP_14065175.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA14373]
gi|421272511|ref|ZP_15723357.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
SPAR55]
gi|172042059|gb|EDT50105.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
CDC1873-00]
gi|332204021|gb|EGJ18088.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47368]
gi|353765388|gb|EHD45932.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA44452]
gi|353778064|gb|EHD58535.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA41410]
gi|353778630|gb|EHD59097.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA49447]
gi|353812965|gb|EHD93198.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA13856]
gi|353834802|gb|EHE14898.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA19077]
gi|353842244|gb|EHE22291.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA41437]
gi|353875260|gb|EHE55112.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae NP127]
gi|353877655|gb|EHE57498.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47751]
gi|353894189|gb|EHE73931.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae NorthCarolina6A-23]
gi|379532739|gb|EHY97963.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA02270]
gi|379533197|gb|EHY98413.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA02714]
gi|379559085|gb|EHZ24115.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA14373]
gi|379588334|gb|EHZ53178.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA44386]
gi|379589346|gb|EHZ54185.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA43264]
gi|395876756|gb|EJG87829.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
SPAR55]
Length = 551
Score = 167 bits (423), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYTPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|153808560|ref|ZP_01961228.1| hypothetical protein BACCAC_02855 [Bacteroides caccae ATCC 43185]
gi|423219389|ref|ZP_17205885.1| DNA polymerase III, subunit gamma and tau [Bacteroides caccae
CL03T12C61]
gi|149128882|gb|EDM20099.1| DNA polymerase III, subunit gamma and tau [Bacteroides caccae ATCC
43185]
gi|392625439|gb|EIY19505.1| DNA polymerase III, subunit gamma and tau [Bacteroides caccae
CL03T12C61]
Length = 618
Score = 167 bits (423), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 180/352 (51%), Gaps = 8/352 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS-L 472
KY P TF +VGQ + L NA+ +K+ Y+F GP G GKT+CARIFA+ +NC +
Sbjct: 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMTPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ C C SC++ + +S NI E+ N + I L++ + +Y++++ D+
Sbjct: 70 ADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDE 129
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ PR +FIL ++ + I+SRCQ + F ++ D + L
Sbjct: 130 VHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVNHL 189
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDE 651
++ASKEGI + +AL +IA ++DG +RDA +Q +S G I+ V + + ++ E
Sbjct: 190 SYVASKEGISAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLDYE 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR-- 709
L D L+ + + ++ G + ++ L++ D+L G T
Sbjct: 250 YYFRLTDCFLANKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLEVG 309
Query: 710 ---RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R+ ++ Q K + L +A+K +E + R+S +K + L+Q+A
Sbjct: 310 ASIRQRYQEQ-AQKCPLPFLYKAMKLCNECDLNYRISKNKRLLVELTLIQVA 360
>gi|168490954|ref|ZP_02715097.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
CDC0288-04]
gi|418193494|ref|ZP_12829987.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47439]
gi|183574571|gb|EDT95099.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
CDC0288-04]
gi|353860217|gb|EHE40164.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47439]
Length = 551
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|193212992|ref|YP_001998945.1| DNA polymerase III subunits gamma and tau [Chlorobaculum parvum
NCIB 8327]
gi|193086469|gb|ACF11745.1| DNA polymerase III, subunits gamma and tau [Chlorobaculum parvum
NCIB 8327]
Length = 390
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 145/271 (53%), Gaps = 14/271 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q + +KY P F D+ Q + + N++ +VG Y+F G G GKT+ AR+FA+A+
Sbjct: 3 YQVIARKYRPSRFADITAQEHITGTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV 62
Query: 468 NCQSL-EQPK-------PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTS 519
NCQ + E PK PCG C SC D G S NI E N + I L +N+
Sbjct: 63 NCQRMIEDPKYLKEVTEPCGECESCRDFDAGASLNISEFDAASNNSVDDIRLLRENVRYG 122
Query: 520 RPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFF 579
+YR+++ D+ LS +++A K ++ P +FI ++ L +P I SRCQ+F
Sbjct: 123 PQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFN 182
Query: 580 FPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-----GQ 634
F ++ ++I LQ+I EGI D DAL+LIA ++ GS+RDA+ L+Q+ G+
Sbjct: 183 FKRIPISEIQRQLQFICDAEGISADDDALQLIARKAQGSMRDAQSILDQVIAFAIDSEGE 242
Query: 635 R-ISVPLVQELVGLISDEKLVDLLDLALSAD 664
R I V +L+ I DE + D +S D
Sbjct: 243 RAIRYDKVSDLLSYIDDEHFFMVTDAIVSGD 273
>gi|419442348|ref|ZP_13982379.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA13224]
gi|421240426|ref|ZP_15696973.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2080913]
gi|379554315|gb|EHZ19395.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA13224]
gi|395609008|gb|EJG69098.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2080913]
Length = 551
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|160886339|ref|ZP_02067342.1| hypothetical protein BACOVA_04349 [Bacteroides ovatus ATCC 8483]
gi|237723209|ref|ZP_04553690.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_2_4]
gi|423289507|ref|ZP_17268357.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus
CL02T12C04]
gi|156108224|gb|EDO09969.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus ATCC
8483]
gi|229447731|gb|EEO53522.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_2_4]
gi|392667218|gb|EIY60728.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus
CL02T12C04]
Length = 621
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 179/352 (50%), Gaps = 8/352 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS-L 472
KY P TF +VGQ + L NA+ +K+ Y+F GP G GKT+CARIFA+ +NC +
Sbjct: 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMTPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ C C SC++ + +S NI E+ N + I L++ + +Y++++ D+
Sbjct: 70 ADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDE 129
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ PR +FIL ++ + I+SRCQ + F ++ D + L
Sbjct: 130 VHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVNHL 189
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDE 651
++ASKEGI + +AL +IA ++DG +RDA +Q +S G I+ V + + ++ E
Sbjct: 190 SYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLDYE 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR-- 709
L D L + + I+ G + ++ L++ D+L G T
Sbjct: 250 YYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLEVG 309
Query: 710 ---RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R+ ++ Q K + L +A+K +E + R+S +K + L+Q+A
Sbjct: 310 ASIRQRYQEQA-QKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQVA 360
>gi|417686308|ref|ZP_12335586.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA41301]
gi|418159535|ref|ZP_12796234.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA17227]
gi|419520801|ref|ZP_14060397.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA05245]
gi|332076145|gb|EGI86611.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA41301]
gi|353821268|gb|EHE01444.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA17227]
gi|379539815|gb|EHZ04992.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA05245]
Length = 551
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|227824621|ref|ZP_03989453.1| DNA polymerase III [Acidaminococcus sp. D21]
gi|226905120|gb|EEH91038.1| DNA polymerase III [Acidaminococcus sp. D21]
Length = 628
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 159/287 (55%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L + + P+ F LVGQ + +AL+NA+ ++ Y+F GP GTGKTS ARI A+ALNC+
Sbjct: 6 LYRTWRPQDFDGLVGQEHIRKALTNALESGRISHAYLFTGPRGTGKTSTARILAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
P PC C+ C G S ++ E+ N + I L + + + S+Y++++
Sbjct: 66 KGPTPHPCNTCDHCREITEGTSADVIEIDAASNRGIDEIRKLREQVHFAPVSSRYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ ++ D+++A+ K ++ P VVFIL ++ +P I SRCQ+F F ++ DI
Sbjct: 126 DEVHMITADAFNALLKTLEEPPEHVVFILATTEPQKIPTTIHSRCQRFDFRRVTVDDIAA 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
LQ +A I + DAL+L+A ++DG +RDA L+Q S++ ++ V++++G+
Sbjct: 186 HLQKVAEGSNINAEPDALRLMAIQADGGMRDAVGLLDQCSIMANPVTAETVRQVLGIAGR 245
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+ + L++ D + L +M+ G + ++++L + +L
Sbjct: 246 DTMRALVEKIGRRDLPAALDLLNQLMDDGKDVTQVLTELLEYMRALL 292
>gi|417698280|ref|ZP_12347453.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA41317]
gi|419453005|ref|ZP_13992978.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
EU-NP03]
gi|419505801|ref|ZP_14045462.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA49194]
gi|332202721|gb|EGJ16790.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA41317]
gi|379607715|gb|EHZ72461.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA49194]
gi|379626714|gb|EHZ91330.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
EU-NP03]
Length = 551
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|418086599|ref|ZP_12723769.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47033]
gi|418202139|ref|ZP_12838569.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA52306]
gi|419455266|ref|ZP_13995226.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
EU-NP04]
gi|421285622|ref|ZP_15736399.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA60190]
gi|353758860|gb|EHD39446.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47033]
gi|353867942|gb|EHE47832.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA52306]
gi|379629723|gb|EHZ94317.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
EU-NP04]
gi|395887601|gb|EJG98616.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA60190]
Length = 551
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYTPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|326799758|ref|YP_004317577.1| DNA polymerase III subunits gamma/tau [Sphingobacterium sp. 21]
gi|326550522|gb|ADZ78907.1| DNA polymerase III, subunits gamma and tau [Sphingobacterium sp.
21]
Length = 607
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 179/352 (50%), Gaps = 10/352 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
KY P TF +VGQ + L NA+ ++ ++F GP G GKT+CARI A+ +NCQ L
Sbjct: 22 KYRPSTFETVVGQQHITGTLKNAIKNSQLAQAFLFCGPRGVGKTTCARILAKTINCQHLS 81
Query: 474 -QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ + CG C+SC S G S +I E+ N + I L++ + +Y+I++ D+
Sbjct: 82 SEIEACGTCDSCKSFQNGNSFSIHELDAASNNSVDDIRSLIEQVRIPPQTGKYKIYIIDE 141
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ P +FIL ++ + I+SRCQ F F ++K I L
Sbjct: 142 VHMLSTQAFNAFLKTLEEPPAYAIFILATTEKHKILPTILSRCQIFDFNRIKVEHIAGHL 201
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVGLISDE 651
IA+KEG+ D+D L LIA ++DG LRDA +Q+ S + +S V + + ++ +
Sbjct: 202 ANIANKEGVAYDQDGLHLIAQKADGGLRDALSMFDQIVSFSNKNVSYQAVIDNLNILDYD 261
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT------K 705
L D S ++VN + ++ G + +S LA+ ++L G T
Sbjct: 262 YYFKLTDAIFSENSVNALLVFDEVLSNGFDGSHFISGLASHFRNLLVGKDASTLKLLEVS 321
Query: 706 DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ R+++ + + E+ L AL ++ E R S ++ + ALL++
Sbjct: 322 ENIRQRYLEQA--QQAEVGLLLSALNIANQCEINYRTSKNQRLQVELALLKM 371
>gi|334364595|ref|ZP_08513577.1| DNA polymerase III, subunit gamma and tau [Alistipes sp. HGB5]
gi|313159185|gb|EFR58558.1| DNA polymerase III, subunit gamma and tau [Alistipes sp. HGB5]
Length = 749
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 180/354 (50%), Gaps = 11/354 (3%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P TF +VGQ + L NA+ R ++ Y+F GP G GKT+CARIFA+A+NC S
Sbjct: 9 RKYRPATFASVVGQKHITSTLKNAIERAQLAHAYLFCGPRGVGKTTCARIFAKAINCLSP 68
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ C C SC S + G+S NI E+ N E I L++ + +Y +F+ D+
Sbjct: 69 NGAEACNECESCRSFNEGRSLNIHELDAASNNSVEDIRTLIEQVRIIPQVGRYSVFIIDE 128
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ P +FIL ++ + I+SRCQ + F +++ D + L
Sbjct: 129 VHMLSAAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIYDFNRIRVEDSVEYL 188
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDA-EMTLEQLSLLGQRISVPLVQELVGLISDE 651
++IA +E I D+++L LIA ++DG +RDA M + +S G + V + + ++ +
Sbjct: 189 KYIAGQENISADEESLNLIAQKADGGMRDALSMFDKAVSFCGTTLDYRNVAQTLNVLDYD 248
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS-------YDFT 704
+ ++ L+ + V+ + ++ G + L + D+L + T
Sbjct: 249 TYFSVTEMLLAGNYVDVLVTFDTVLSKGFSGQTFTAGLNRHMRDLLMAKRPETLRLIEMT 308
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R +R Q +E L A+ L+E + ++R S+++ + L+++A
Sbjct: 309 GTLLER--YRTQ-AGACNVEFLFGAISILTELDGKIRQSSNQRLLVELGLMKIA 359
>gi|218961502|ref|YP_001741277.1| DNA polymerase III, gamma/tau subunits (fragment), partial
[Candidatus Cloacamonas acidaminovorans]
gi|167730159|emb|CAO81071.1| DNA polymerase III, gamma/tau subunits (fragment) [Candidatus
Cloacamonas acidaminovorans str. Evry]
Length = 533
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 154/272 (56%), Gaps = 1/272 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+ F+++ Q + + L +A+ ++ Y+F GP G GKTS ARI A++LNC
Sbjct: 6 LARKYRPQNFKEVYAQEHITEILQSAIATNRIAHAYLFTGPRGVGKTSLARILAKSLNCV 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ PC C++C+ G S ++ E+ N + I +L ++ S Y+I++
Sbjct: 66 NGPTTTPCNACSNCLEITAGTSPDVIEIDGASNTSVDDIRELQRELLYPASSSNYKIYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS ++++A+ K ++ P V+FI ++ + IISRCQ++ F ++ A I+
Sbjct: 126 DEVHMLSKNAFNALLKTLEEPPDNVIFIFATTEPQKVLPTIISRCQRYDFKRIPIASIVQ 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLIS 649
LQ I+ EGI+ID ++L LIA ++DG +RDA ++Q +S I++ V+++ G+I
Sbjct: 186 RLQEISVLEGIKIDSESLYLIARKADGGMRDALSLMDQAISYCLNNITIDKVRQIFGMIP 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVE 681
++ L L + DT + L +I E G++
Sbjct: 246 NQVYQKFLTLIYNKDTQGLINELHLIFEQGID 277
>gi|253577375|ref|ZP_04854692.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14]
gi|251843275|gb|EES71306.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14]
Length = 589
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 100/355 (28%), Positives = 184/355 (51%), Gaps = 5/355 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H L + + P++F+D+VGQ + + L NA+ +++ Y+F GP GTGKTS A+I A+A+
Sbjct: 3 HIALYRAWRPQSFQDMVGQQHIIRTLQNAIREQRLSHAYLFSGPRGTGKTSAAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C++C G ++ E+ N E I DL + + + + ++
Sbjct: 63 NCEKGPAAEPCNECDACRRITAGAVMDVLEIDAASNRGVEEIRDLREKVKYAPTEVRQKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+FIL ++ LP +ISRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHRLPATVISRCQRFDFRRVSLEE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVG 646
L+ I +EGIE +K+A++ IA SDG +RDA L+Q+ S G+++S V ++ G
Sbjct: 183 QSERLRMICEQEGIEAEKEAIEYIARLSDGGMRDALSILDQIASFSGRKVSYQQVLDMTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
I+ + +L L D ++ + M+ G M L D+L D
Sbjct: 243 GIASRQFAELAKTLLDGDIGGMLQMIDGFMQEGKSADKCMENLLYYFRDLLMVKMVPQAD 302
Query: 707 RHRRKFFRRQPLSK--EEMEK--LRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ + Q ++ E K L + + TL+ + +++ + T ALL++
Sbjct: 303 KLTERVLDPQDFAEIAEGFSKSQLFRIIDTLNHYQTEMKYAVQPQTLFEVALLKI 357
>gi|365903471|ref|ZP_09441294.1| DNA polymerase III subunits gamma and tau [Lactobacillus
malefermentans KCTC 3548]
Length = 584
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 189/365 (51%), Gaps = 23/365 (6%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F +++GQ L+ Q L NA++ ++ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRPQRFDEIIGQELITQTLKNALITKQTSHAYLFAGPRGTGKTSAAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC L+ +PC C++C + RG ++ E+ N E I D+ D + + Y++
Sbjct: 63 NCHFLKDGEPCNECDTCKAITRGTLNDVIEIDAASNNGVEEIRDIRDKAKYTPTEADYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR Q+F F ++K AD
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQRFDFRRIKAAD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+++I ++ + D ALK+IA ++G +RDA L+Q LS I++ + G
Sbjct: 183 SFKRMKYILDEKQVTYDDQALKVIAKAAEGGMRDALSILDQALSFGDNEITLNNALLVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEP-------------LALMSQLATVI 693
+ L + + T + + L+ ++E G + L L Q ++
Sbjct: 243 SVEKGLLSTYISQVIQMKTTDALVTLQKVLEEGKDAHRFIEDLLDYMRNLLLYQQAPEIV 302
Query: 694 TDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAA 753
D G + +D + F Q LS +++ K+ + L+ + Q+R++N +L
Sbjct: 303 ADSELG--EVPEDVEQ---FSEQ-LSADDLFKI---INILNNIQSQMRLTNHPDIYLEVL 353
Query: 754 LLQLA 758
+QLA
Sbjct: 354 TIQLA 358
>gi|405761008|ref|YP_006701604.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
SPNA45]
gi|404277897|emb|CCM08460.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
SPNA45]
Length = 551
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|15612597|ref|NP_240900.1| DNA polymerase III subunits gamma and tau [Bacillus halodurans
C-125]
gi|10172646|dbj|BAB03753.1| DNA polymerase III gamma and tau subunits [Bacillus halodurans
C-125]
Length = 564
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 163/291 (56%), Gaps = 1/291 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ +D+VGQ + + L NA+++ K Y+F GP GTGKTS A+I A+A+
Sbjct: 3 YQALYRVWRPQKLQDVVGQEHITKTLQNALVQEKFSHAYLFSGPRGTGKTSAAKIIAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C G ++ E+ N + I D+ D++ + +Y++
Sbjct: 63 NCEQAPIAEPCNECRACKGITSGSIVDVMEIDAASNNGVDEIRDIRDHVKFAPSEVRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ +++A+ K ++ P +FIL ++ +P IISRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLTTGAFNALLKTLEEPPSHAIFILATTEPHKIPLTIISRCQRFDFKRISNDA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ ++ I + EGIE + +AL L+A ++G +RD+ L+Q +S +R++V V + G
Sbjct: 183 LVGRMKEILTHEGIEAEDEALVLVARAAEGGMRDSLSLLDQAISFADERVTVEDVLAITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+S E L +++ A +T ++ + ++ G +PL + L D++
Sbjct: 243 AVSHEVLTQVVESAQKGETAEALQLVNQLLANGKDPLRFVEDLIYYYRDLM 293
>gi|149002400|ref|ZP_01827334.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
SP14-BS69]
gi|149010503|ref|ZP_01831874.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
SP19-BS75]
gi|168493019|ref|ZP_02717162.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
CDC3059-06]
gi|182683780|ref|YP_001835527.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
CGSP14]
gi|221231645|ref|YP_002510797.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae ATCC
700669]
gi|225854373|ref|YP_002735885.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
JJA]
gi|225858665|ref|YP_002740175.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
70585]
gi|237822659|ref|ZP_04598504.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
CCRI 1974M2]
gi|387626217|ref|YP_006062390.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
INV104]
gi|415698028|ref|ZP_11456984.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 459-5]
gi|415749268|ref|ZP_11477212.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae SV35]
gi|415751951|ref|ZP_11479062.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae SV36]
gi|417693786|ref|ZP_12342975.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47901]
gi|418073642|ref|ZP_12710901.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA11184]
gi|418078354|ref|ZP_12715577.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 4027-06]
gi|418080310|ref|ZP_12717525.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 6735-05]
gi|418089259|ref|ZP_12726416.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA43265]
gi|418104914|ref|ZP_12741974.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA44500]
gi|418114356|ref|ZP_12751347.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 5787-06]
gi|418116593|ref|ZP_12753567.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 6963-05]
gi|418120934|ref|ZP_12757880.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA44194]
gi|418123131|ref|ZP_12760066.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA44378]
gi|418127718|ref|ZP_12764614.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae NP170]
gi|418130031|ref|ZP_12766915.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA07643]
gi|418134921|ref|ZP_12771778.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA11426]
gi|418136892|ref|ZP_12773735.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA11663]
gi|418143679|ref|ZP_12780479.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA13494]
gi|418173234|ref|ZP_12809848.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA41277]
gi|418177891|ref|ZP_12814475.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA41565]
gi|418183116|ref|ZP_12819674.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA43380]
gi|418186876|ref|ZP_12823405.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47360]
gi|418216314|ref|ZP_12843038.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae Netherlands15B-37]
gi|418229603|ref|ZP_12856210.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae EU-NP01]
gi|419431261|ref|ZP_13971407.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
EU-NP05]
gi|419433677|ref|ZP_13973795.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA40183]
gi|419440078|ref|ZP_13980132.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA40410]
gi|419457244|ref|ZP_13997189.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA02254]
gi|419464242|ref|ZP_14004135.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA04175]
gi|419468733|ref|ZP_14008604.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA06083]
gi|419472922|ref|ZP_14012773.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA13430]
gi|419477531|ref|ZP_14017356.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA18068]
gi|419490784|ref|ZP_14030524.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA47179]
gi|419497044|ref|ZP_14036755.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA47522]
gi|419534312|ref|ZP_14073818.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA17457]
gi|421206308|ref|ZP_15663370.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2090008]
gi|421213045|ref|ZP_15670006.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2070108]
gi|421215098|ref|ZP_15672028.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2070109]
gi|421229504|ref|ZP_15686179.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2061376]
gi|421268066|ref|ZP_15718938.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
SPAR95]
gi|421270286|ref|ZP_15721143.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
SPAR48]
gi|421280849|ref|ZP_15731648.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA04672]
gi|421291734|ref|ZP_15742472.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA56348]
gi|421309297|ref|ZP_15759925.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA62681]
gi|421311604|ref|ZP_15762211.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA58981]
gi|444382873|ref|ZP_21181072.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PCS8106]
gi|444385700|ref|ZP_21183771.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PCS8203]
gi|147759337|gb|EDK66329.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
SP14-BS69]
gi|147764984|gb|EDK71913.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
SP19-BS75]
gi|182629114|gb|ACB90062.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
CGSP14]
gi|183576952|gb|EDT97480.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
CDC3059-06]
gi|220674105|emb|CAR68624.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae ATCC
700669]
gi|225721913|gb|ACO17767.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
70585]
gi|225723299|gb|ACO19152.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae JJA]
gi|301794000|emb|CBW36398.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
INV104]
gi|332204869|gb|EGJ18934.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47901]
gi|353747545|gb|EHD28201.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 4027-06]
gi|353750992|gb|EHD31627.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA11184]
gi|353753921|gb|EHD34537.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 6735-05]
gi|353761945|gb|EHD42508.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA43265]
gi|353779348|gb|EHD59814.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA44500]
gi|353787654|gb|EHD68056.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 5787-06]
gi|353790431|gb|EHD70814.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 6963-05]
gi|353793761|gb|EHD74120.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA44194]
gi|353798604|gb|EHD78934.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA44378]
gi|353800179|gb|EHD80493.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae NP170]
gi|353803323|gb|EHD83615.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA07643]
gi|353809420|gb|EHD89680.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA13494]
gi|353839933|gb|EHE20007.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA41277]
gi|353844665|gb|EHE24708.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA41565]
gi|353848099|gb|EHE28116.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA43380]
gi|353852701|gb|EHE32687.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47360]
gi|353873365|gb|EHE53226.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae Netherlands15B-37]
gi|353889789|gb|EHE69557.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae EU-NP01]
gi|353902158|gb|EHE77688.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA11426]
gi|353902820|gb|EHE78348.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA11663]
gi|379532242|gb|EHY97471.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA02254]
gi|379539461|gb|EHZ04640.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA04175]
gi|379546836|gb|EHZ11974.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA06083]
gi|379552429|gb|EHZ17518.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA13430]
gi|379566913|gb|EHZ31900.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA18068]
gi|379567356|gb|EHZ32342.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA17457]
gi|379576678|gb|EHZ41602.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA40183]
gi|379580689|gb|EHZ45579.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA40410]
gi|379594363|gb|EHZ59173.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA47179]
gi|379601558|gb|EHZ66331.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA47522]
gi|379632505|gb|EHZ97081.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
EU-NP05]
gi|381309647|gb|EIC50480.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae SV36]
gi|381317220|gb|EIC57947.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 459-5]
gi|381317562|gb|EIC58287.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae SV35]
gi|395577076|gb|EJG37629.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2090008]
gi|395580632|gb|EJG41113.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2070108]
gi|395581817|gb|EJG42284.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2070109]
gi|395596838|gb|EJG57048.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2061376]
gi|395870938|gb|EJG82051.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
SPAR48]
gi|395871490|gb|EJG82596.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
SPAR95]
gi|395884206|gb|EJG95248.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA04672]
gi|395893951|gb|EJH04932.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA56348]
gi|395911409|gb|EJH22276.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA62681]
gi|395912182|gb|EJH23045.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA58981]
gi|444249378|gb|ELU55869.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PCS8203]
gi|444251242|gb|ELU57714.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PCS8106]
Length = 551
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|254474501|ref|ZP_05087887.1| DNA polymerase III, tau subunit [Ruegeria sp. R11]
gi|214028744|gb|EEB69579.1| DNA polymerase III, tau subunit [Ruegeria sp. R11]
Length = 607
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 158/294 (53%), Gaps = 6/294 (2%)
Query: 405 NGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFA 464
G++Q L +KY P TF DLVGQ+ + + L NA ++ ++ G GTGKT+ ARI A
Sbjct: 12 TGQYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIA 71
Query: 465 RALNC-----QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTS 519
+ +NC Q PCG C C + G+ ++ E+ I +++D++
Sbjct: 72 KGMNCIGEDGQGGPTTDPCGKCEHCTAIMEGRHVDVMEMDAASRTGVGDIREIIDSVQYR 131
Query: 520 RPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFF 579
++Y+I++ D+ LS +++A+ K ++ P V FI ++ + +P ++SRCQ+F
Sbjct: 132 AASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFD 191
Query: 580 FPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISV 638
+++ +I L+ IA+ EG +I +DAL LI ++GS RDA L+Q +S +
Sbjct: 192 LRRIEPEVMIDLLRRIATAEGADIAEDALALITRAAEGSARDATSLLDQAISHGAGETTA 251
Query: 639 PLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV 692
V+ ++GL +++DL+D+ L D + L G +PLA++ LA +
Sbjct: 252 DQVRAMLGLADRGRVLDLMDMILRGDAAAALTELSAQYAEGADPLAVLRDLAEI 305
>gi|323701680|ref|ZP_08113352.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum
nigrificans DSM 574]
gi|333922265|ref|YP_004495845.1| DNA polymerase III subunits gamma and tau [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|323533453|gb|EGB23320.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum
nigrificans DSM 574]
gi|333747826|gb|AEF92933.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 542
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 180/338 (53%), Gaps = 12/338 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L + + P+ F+D+VGQ + + L NA++ +V Y+F GP GTGKT+ A++ A+AL
Sbjct: 3 YKALYRTWRPQNFKDIVGQQHITRTLQNALVNGRVAHAYLFCGPRGTGKTTTAKVLAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C +C + + G + ++ E+ N + I DL + + + + ++
Sbjct: 63 NCLRGVDGEPCNECENCRAVNEGSAVDVVEIDAASNRGIDEIRDLREKVKFTPSMGRRKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ +++A+ K ++ P VVF+L ++ +P I+SRCQ+F F ++K +
Sbjct: 123 YIIDEVHMLTDQAFNALLKTLEEPPAHVVFVLATTEAHKVPVTILSRCQRFDFRRIKPEE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPL-VQELVG 646
++ L+ +A+ GIE++++AL LIA ++G LRDA L+Q + + P + ++G
Sbjct: 183 MVQRLKEVAAGSGIEVEEEALWLIAKAAEGGLRDALSILDQAAAFAAKTVSPADIHSILG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+ E L ++ + T ++ + I + G + +L + + ++
Sbjct: 243 TVQQEVLANMTQYLVQGKTAEALRLISEISDRGKDLRLFTKELTS-----------YLRE 291
Query: 707 RHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSN 744
R +RQP + L L+ L +AE++++ S+
Sbjct: 292 RLLESMEQRQPAANINEATLYNLLQILVQAEQEMKWSS 329
>gi|421233858|ref|ZP_15690480.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2061617]
gi|395602755|gb|EJG62897.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2061617]
Length = 551
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|19746336|ref|NP_607472.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
MGAS8232]
gi|19748530|gb|AAL97971.1| DNA polymerase III gamma/tau subunits [Streptococcus pyogenes
MGAS8232]
Length = 556
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 156/292 (53%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L W+ KEGI + DAL LIA R++G +RDA L+Q LSL ++++ + +E+
Sbjct: 182 IREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L + + L I ++G + L T + D+L
Sbjct: 242 GSISILALGGYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLL 293
>gi|402828799|ref|ZP_10877684.1| DNA polymerase III, subunit gamma and tau [Slackia sp. CM382]
gi|402285957|gb|EJU34437.1| DNA polymerase III, subunit gamma and tau [Slackia sp. CM382]
Length = 862
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 159/292 (54%), Gaps = 2/292 (0%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
+ L +KY P+TF D+VGQ + + + NA+ +V Y+F GP GTGKT+ AR+ A+AL
Sbjct: 3 EALYRKYRPQTFDDVVGQIHIERTIKNALESDRVSHAYLFCGPRGTGKTTMARLLAKALL 62
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP-SQYRI 527
C+ P P G C C++ G ++ E+ E++ + + V P +Y+I
Sbjct: 63 CEKGPTPAPDGECEQCLAIAEGTHPDVNEMDAASRTGVENVREEIIGRVQFAPVRGRYKI 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ +P I SRCQ+F F ++ + +
Sbjct: 123 YIIDEVHMLSTAAFNALLKTLEEPPSHVVFILCTTDPHKVPATIHSRCQRFDFHRLANEE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
II L + + EG+E + +AL+L A R+ G +RDA TLEQL G+ R+++ + +++G
Sbjct: 183 IIARLGAVCASEGVEFEAEALELAAKRAQGGMRDALTTLEQLIAFGEGRVTMQVALDVLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA 698
+ + D++ D + +ETG + LA+ + D+ A
Sbjct: 243 ALDSNDMTDIVARIARRDAAACFTWVAEYVETGADLAQFARDLASYVRDLYA 294
>gi|300870618|ref|YP_003785489.1| DNA polymerase III subunits gamma and tau [Brachyspira pilosicoli
95/1000]
gi|431808555|ref|YP_007235453.1| DNA polymerase III subunits gamma and tau [Brachyspira pilosicoli
P43/6/78]
gi|434383092|ref|YP_006704875.1| DNA polymerase III subunits gamma and tau [Brachyspira pilosicoli
WesB]
gi|300688317|gb|ADK30988.1| DNA polymerase III, subunits gamma and tau [Brachyspira pilosicoli
95/1000]
gi|404431741|emb|CCG57787.1| DNA polymerase III subunits gamma and tau [Brachyspira pilosicoli
WesB]
gi|430781914|gb|AGA67198.1| DNA polymerase III subunits gamma and tau [Brachyspira pilosicoli
P43/6/78]
Length = 521
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 194/366 (53%), Gaps = 17/366 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ + +KY P+TF +++GQ + + +S ++ ++K+ Y+F G HG GKTS ARI A+AL
Sbjct: 5 YKVIARKYRPQTFEEVIGQEHITKTISKSIAQKKIAHAYLFSGAHGVGKTSLARIIAKAL 64
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + KPCG C SC + G ++ E+ N E+I +++N+ S +Y++
Sbjct: 65 NCVNGPTDKPCGVCPSCTQIENGTPLDVIEIDGASNRGIENIRTIIENVRISPVAGKYKV 124
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ ++ ++++A+ K ++ P VVFIL ++ D + I SRCQ++ F + D
Sbjct: 125 YIIDEVHQITNEAFNALLKTLEEPPAHVVFILATTEADRVLPTIRSRCQQYIFKSLGIED 184
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG---QRISVPLVQEL 644
+ L+ I KE I D +A+ LIA ++ GS+RD+E LE++ + I+ V +
Sbjct: 185 LEKILKGILDKENIAYDDEAIFLIAKQARGSVRDSETILEKMIAYTADKKHITSGDVIAV 244
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT---VITDILAGSY 701
VG + + D D+ +S D N + ++ + E V+P ++ L V+ I +G
Sbjct: 245 VGGNNFSFVKDFFDVMISKDKKNYFQFVKKLFEESVDPRTFINNLIEYMRVVLMIKSGID 304
Query: 702 DFT------KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLR-MSNDKLTWLTAAL 754
D +R K F S +E+E++ L + E+++R SN ++ + L
Sbjct: 305 DIKLLEITENERDDLKTFANN-YSDDEIERI---LDYILNVEERIRNASNARVIFEMRML 360
Query: 755 LQLAPD 760
L L D
Sbjct: 361 LLLDTD 366
>gi|221633732|ref|YP_002522958.1| DNA polymerase III subunit gamma/tau [Thermomicrobium roseum DSM
5159]
gi|221156252|gb|ACM05379.1| DNA polymerase III subunit gamma/tau [Thermomicrobium roseum DSM
5159]
Length = 562
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 150/255 (58%), Gaps = 7/255 (2%)
Query: 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC 469
+L +KY P+TF +LVGQ +A+ L NAV +V Y+F GP GTGKTS AR+ A+A+NC
Sbjct: 5 SLYRKYRPQTFEELVGQEAIARTLRNAVALDRVAHAYLFCGPRGTGKTSTARLLAKAVNC 64
Query: 470 QSLEQ-PKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
+ + +PC C +C S G + +I E+ N + I DL + + + + + +
Sbjct: 65 RDADPWRRPCNQCGACRSIATGTAVDIIEIDAASNRGVDDIRDLREKVKYAPVELRTKFY 124
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ L+ D+++A K ++ P VVF+L ++ D LP + SRCQ+F F ++ +
Sbjct: 125 IIDEAHQLTRDAFNAFLKTLEEPPPHVVFVLATTEPDKLPETVASRCQRFDFRRLPVDRM 184
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR------ISVPLVQ 642
+ L+++ +EGIE D L LIA R+ GSLRDA LE+L++ I++ L +
Sbjct: 185 VERLRFVCLREGIEAPDDVLALIARRAAGSLRDALGLLERLAVFASDGENEPVITLELAR 244
Query: 643 ELVGLISDEKLVDLL 657
+++G D++L+DL+
Sbjct: 245 QVLGGSRDDRLLDLV 259
>gi|295087965|emb|CBK69488.1| DNA polymerase III, tau subunit [Bacteroides xylanisolvens XB1A]
Length = 621
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 179/352 (50%), Gaps = 8/352 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS-L 472
KY P TF +VGQ + L NA+ +K+ Y+F GP G GKT+CARIFA+ +NC +
Sbjct: 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMTPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ C C SC++ + +S NI E+ N + I L++ + +Y++++ D+
Sbjct: 70 ADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDE 129
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ PR +FIL ++ + I+SRCQ + F ++ D + L
Sbjct: 130 VHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVNHL 189
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDE 651
++ASKEGI + +AL +IA ++DG +RDA +Q +S G I+ V + + ++ E
Sbjct: 190 SYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLDYE 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR-- 709
L D L + + I+ G + ++ L++ D+L G T
Sbjct: 250 YYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLEVG 309
Query: 710 ---RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R+ ++ Q K + L +A+K +E + R+S +K + L+Q+A
Sbjct: 310 ASIRQRYQEQA-QKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLMQVA 360
>gi|168485812|ref|ZP_02710320.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
CDC1087-00]
gi|418184685|ref|ZP_12821232.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47283]
gi|419510490|ref|ZP_14050134.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
NP141]
gi|419530686|ref|ZP_14070213.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA40028]
gi|183570972|gb|EDT91500.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
CDC1087-00]
gi|353851221|gb|EHE31217.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47283]
gi|379573594|gb|EHZ38549.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA40028]
gi|379633683|gb|EHZ98252.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
NP141]
Length = 551
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAI 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|317472133|ref|ZP_07931465.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
gi|316900537|gb|EFV22519.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
Length = 532
Score = 167 bits (422), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 107/369 (28%), Positives = 192/369 (52%), Gaps = 23/369 (6%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L +K+ P F ++ GQ+ + L N + ++G Y+F G GTGKTS A++ A+A+
Sbjct: 3 YMALYRKFRPSAFDEVKGQDHIVTTLKNQLEAGRIGHAYLFCGTRGTGKTSVAKLLAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ E PCG C SC G S N+ E+ N ++I D+ + + S +Y++
Sbjct: 63 NCEHPEDGNPCGVCESCREIQEGSSMNVMEIDAASNNGVDNIRDIKEQVQYSPASGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
F+ D+ LS +++A+ K ++ P V+FIL ++ + +P I+SRCQ++ F ++ AD
Sbjct: 123 FIIDEVHMLSMGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQRYDFHRIT-AD 181
Query: 588 IIYT-LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL--SLLGQRISVPLVQEL 644
+I L + S+E +E ++ AL+ +A +DGS+RDA L+Q LG++++ V E+
Sbjct: 182 VIADRLMELMSEEHVEAEEKALRYVARMADGSMRDALSLLDQCIAFYLGKKLTYENVLEV 241
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD--------I 696
+G + LLD L+ D + + ++E G E L+ ITD +
Sbjct: 242 LGTVDISVYARLLDSILANDVTEVIGIVGKVVEQGRE-------LSQFITDFIWYLRNLL 294
Query: 697 LAGSYDFTKD----RHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTA 752
LAG D + + + ++ ++ E E + + ++ LS+ Q+R S K
Sbjct: 295 LAGKGDASMEALEVSAEQLSLMQEKAAQVEEETVIRYIRILSDLLNQIRFSTSKRVLAEV 354
Query: 753 ALLQLAPDQ 761
AL+++ Q
Sbjct: 355 ALIKMCRPQ 363
>gi|386712377|ref|YP_006178699.1| DNA polymerase III subunit gamma/tau [Halobacillus halophilus DSM
2266]
gi|384071932|emb|CCG43422.1| DNA polymerase III gamma/tau subunit [Halobacillus halophilus DSM
2266]
Length = 574
Score = 167 bits (422), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 194/357 (54%), Gaps = 9/357 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ + + L NA+ + K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRPKNFEDVVGQTHITRTLQNAIEQDKFSHAYLFSGPRGTGKTSAAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C++C+ G ++ E+ N E I ++ D + + Y++
Sbjct: 63 NCERSPAKEPCNECSACLGIQDGSISDVIEIDAASNNGVEQIREIRDKVKYAPSAVTYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F ++
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPQHVIFILATTEPHKIPLTIISRCQRFDFKRISQKA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +Q I + E I I ++AL+++A ++G +RDA L+Q +S + +++ V + G
Sbjct: 183 MVERMQGITASEQISIAEEALEIVALTAEGGMRDALSLLDQAVSYSEEEVTIEDVLAVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--AGSYDFT 704
+S +L +++ + + ++ + +++ G +P + L + DIL + D
Sbjct: 243 AVSQGRLAEVVQALHDHEVKDALEAVDDLIQQGKDPGRFVFDLIYYLRDILLFQSAPDLA 302
Query: 705 KDRHRR---KFFRRQPLSKE-EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
+ R FR+ LS E +++A++ L++ +++++ + ++ ALL +
Sbjct: 303 HNLERALPDDTFRK--LSGELSAYWIQKAIRELNQCQQEMKWTTSPKVFIEIALLNM 357
>gi|407004011|gb|EKE20489.1| hypothetical protein ACD_7C00555G0001 [uncultured bacterium]
Length = 572
Score = 167 bits (422), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 177/324 (54%), Gaps = 12/324 (3%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P F D+VGQ + + LSNA+ + G Y+F GP GTGKT+ AR+FA+ +NC
Sbjct: 6 LYRKYRPSQFNDVVGQQHIVRTLSNAIENNRAGQAYLFTGPRGTGKTTFARVFAKTVNCT 65
Query: 471 S-LEQPK-----PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ 524
+ +++ K PC C +C + S +I E+ N ++I +L + S +
Sbjct: 66 APIKKSKDHFLAPCLKCENCQQFENNTSADIIEIDAASNTGVDNIRELRETAKLSPFKGK 125
Query: 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMK 584
Y+I++ D+ LS +++A+ K+++ P ++FIL ++ + +P IISRCQ+F F K
Sbjct: 126 YKIYIIDEVHMLSLGAFNALLKILEEPPAHIIFILATTEIHKVPETIISRCQRFDFSKFD 185
Query: 585 DADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQE 643
+II L I KE I I++ AL+LIA ++G +RDAE LEQ ++L +I+ V +
Sbjct: 186 IEEIIGKLSAIVKKEKITIEEPALELIAISAEGGMRDAESLLEQIITLEKNKITSEKVAD 245
Query: 644 LVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDF 703
++G+ S++ + +L L T + + I + G L + I+ + D
Sbjct: 246 ILGISSNQSVEELTALVFDKKTAQALLLINKIYKDGYNLEFLAKSWLEYLRKIMLLNIDA 305
Query: 704 TKDRHRRKFFRRQPLSKEEMEKLR 727
+ D +K F + ++ E+ EK++
Sbjct: 306 SLD---KKIFSK--MTIEQKEKIK 324
>gi|408791290|ref|ZP_11202900.1| DNA polymerase III, subunit gamma and tau [Leptospira meyeri
serovar Hardjo str. Went 5]
gi|408462700|gb|EKJ86425.1| DNA polymerase III, subunit gamma and tau [Leptospira meyeri
serovar Hardjo str. Went 5]
Length = 503
Score = 167 bits (422), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 151/271 (55%), Gaps = 7/271 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
HQ L +KY P+ FRD++ Q+L +L NA +K+G Y+F GP G GKT+ ARI A+ L
Sbjct: 5 HQVLFRKYRPQFFRDVIYQDLAVGSLQNAFKSKKIGHAYIFIGPRGVGKTTIARILAKRL 64
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ + +PC C SC+ +G S ++ E+ N ++I +L +N+ + +YR+
Sbjct: 65 NCERPDGVEPCNECTSCLEITKGNSNDVFEIDAASNSGVDNIRELRENVKFNAMGGKYRV 124
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ +P I+SRCQ F F K+
Sbjct: 125 YILDEVHMLSGAAFNALLKTLEEPPAHVVFILATTEYHKIPETILSRCQDFHFRKVPVTV 184
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRISVPLVQELV 645
+ ++ + KE ++ D + L IA + DGS+RD +EQ + G V L ++++
Sbjct: 185 LQNYIESLCEKESLKYDSEGLFWIAKKGDGSVRDTLSFMEQAVIFTDGNLTGVKL-RKMI 243
Query: 646 GLISDEKLVD----LLDLALSADTVNTVKNL 672
G + D +LD + SA T++NL
Sbjct: 244 GYHGIDTFTDFLNQILDFSQSAQIFETLENL 274
>gi|269216238|ref|ZP_06160092.1| DNA polymerase III, subunit gamma and tau [Slackia exigua ATCC
700122]
gi|269130497|gb|EEZ61575.1| DNA polymerase III, subunit gamma and tau [Slackia exigua ATCC
700122]
Length = 862
Score = 167 bits (422), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 159/292 (54%), Gaps = 2/292 (0%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
+ L +KY P+TF D+VGQ + + + NA+ +V Y+F GP GTGKT+ AR+ A+AL
Sbjct: 3 EALYRKYRPQTFDDVVGQIHIERTIKNALESDRVSHAYLFCGPRGTGKTTMARLLAKALL 62
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP-SQYRI 527
C+ P P G C C++ G ++ E+ E++ + + V P +Y+I
Sbjct: 63 CEKGPTPAPDGECEQCLAIAEGTHPDVNEMDAASRTGVENVREEIIGRVQFAPVRGRYKI 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ +P I SRCQ+F F ++ + +
Sbjct: 123 YIIDEVHMLSTAAFNALLKTLEEPPSHVVFILCTTDPHKVPATIHSRCQRFDFHRLANEE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
II L + + EG+E + +AL+L A R+ G +RDA TLEQL G+ R+++ + +++G
Sbjct: 183 IIARLGAVCASEGVEFEAEALELAAKRAQGGMRDALTTLEQLIAFGEGRVTMQVALDVLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA 698
+ + D++ D + +ETG + LA+ + D+ A
Sbjct: 243 ALDSNDMTDIVARIARRDAAACFTWVAEYVETGADLAQFARDLASYVRDLYA 294
>gi|15902813|ref|NP_358363.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
R6]
gi|116516459|ref|YP_816247.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
D39]
gi|421265890|ref|ZP_15716773.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
SPAR27]
gi|15458364|gb|AAK99573.1| DNA-directed DNA polymerase III chain [Streptococcus pneumoniae R6]
gi|116077035|gb|ABJ54755.1| DNA polymerase III, gamma and tau subunits [Streptococcus
pneumoniae D39]
gi|395868626|gb|EJG79743.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
SPAR27]
Length = 551
Score = 167 bits (422), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLPALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|389576439|ref|ZP_10166467.1| DNA polymerase III, subunit gamma/tau [Eubacterium cellulosolvens
6]
gi|389311924|gb|EIM56857.1| DNA polymerase III, subunit gamma/tau [Eubacterium cellulosolvens
6]
Length = 542
Score = 167 bits (422), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 196/370 (52%), Gaps = 24/370 (6%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P TF ++ GQ+ + + L N + ++G Y+F G GTGKT+ A++FARA+
Sbjct: 3 YQALYRKFRPTTFEEVKGQDHIVKTLKNQLRANRIGHAYLFCGTRGTGKTTIAKVFARAV 62
Query: 468 NCQ-SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS-QY 525
NC+ LE PC C +C +G S N+ E+ N ++I ++ + V RP +Y
Sbjct: 63 NCEHPLEDGSPCNECETCRGILKGTSNNVIEIDAASNNGVDNIREIREE-VGYRPTQGKY 121
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ LS +++A+ K ++ P V+FIL ++ ++ +P I+SRCQ++ F ++
Sbjct: 122 KVYIIDEVHMLSTGAFNALLKTLEEPPEYVIFILATTEINKIPVTILSRCQRYNFHRITI 181
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL--SLLGQRISVPLVQE 643
I L+ + ++E +E + A++ +A +DGS+RDA L+Q LG++++ V E
Sbjct: 182 DTIAGRLRELLTRENVEAEDRAVRYVAKTADGSMRDALSLLDQCIAFYLGEKLTYEKVLE 241
Query: 644 LVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDF 703
++G + + LL + D ++V+ L ++ G E M Q +TD + +
Sbjct: 242 VLGTVDTDVFSRLLRCVIGGDASSSVRILGDMVREGKE----MGQF---VTDFIWYLRNL 294
Query: 704 TKDRHRRKFFRRQPLSKEEMEKLRQ------------ALKTLSEAEKQLRMSNDKLTWLT 751
++ +S E +E+LR+ ++ LS+ QLR + K +
Sbjct: 295 MLVQNSEDLEDVLDVSTENLEQLREESKMIDSEVLMRYIRILSDLSGQLRFATQKQILVE 354
Query: 752 AALLQLAPDQ 761
+AL++L Q
Sbjct: 355 SALIRLCRPQ 364
>gi|187776529|ref|ZP_02993002.1| hypothetical protein CLOSPO_00034 [Clostridium sporogenes ATCC
15579]
gi|187775188|gb|EDU38990.1| DNA polymerase III, subunit gamma and tau [Clostridium sporogenes
ATCC 15579]
Length = 544
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 193/359 (53%), Gaps = 10/359 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+ L +++ PRTF+++VGQ + L N V+ +++ Y+F G GTGKTS A+I ++A+
Sbjct: 6 YTALYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAV 65
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ--Y 525
NC + + +PC C C + G ++ E+ E I ++++N+ PP +
Sbjct: 66 NCLNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENV--KYPPQEGKN 123
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ L+ ++ +A K ++ P V+FIL ++ LP I+SRCQ+F F ++++
Sbjct: 124 KVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIRN 183
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQEL 644
+I L+ I S++GI D +L LIA SDG++RDA L+Q+ G ++ V ++
Sbjct: 184 EEIFERLRSIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDM 243
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT 704
+GL+++E L+ + + + D +++ + I+ +G + M + T + +IL
Sbjct: 244 LGLVTNENLLIITNSIIEKDVEKSMRIIEDIVLSGKDINNFMKDMITHLRNILMVKVSKN 303
Query: 705 KDRHRRKFFRRQPLSKEEMEKLR-----QALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
D L KE+ EK+R + +K L EAE+Q + +L A+L++
Sbjct: 304 PDEILDMSSENIDLVKEQAEKIRIEEIMRNIKILQEAEQQSKWVKQSRIYLELAVLKMC 362
>gi|167748328|ref|ZP_02420455.1| hypothetical protein ANACAC_03072 [Anaerostipes caccae DSM 14662]
gi|167652320|gb|EDR96449.1| DNA polymerase III, subunit gamma and tau [Anaerostipes caccae DSM
14662]
Length = 529
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 191/366 (52%), Gaps = 23/366 (6%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P F ++ GQ+ + L N + ++G Y+F G GTGKTS A++ A+A+NC+
Sbjct: 3 LYRKFRPSAFDEVKGQDHIVTTLKNQLEAGRIGHAYLFCGTRGTGKTSVAKLLAKAVNCE 62
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
E PCG C SC G S N+ E+ N ++I D+ + + S +Y++F+
Sbjct: 63 HPEDGNPCGVCESCREIQEGSSMNVMEIDAASNNGVDNIRDIKEQVQYSPASGKYKVFII 122
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A+ K ++ P V+FIL ++ + +P I+SRCQ++ F ++ AD+I
Sbjct: 123 DEVHMLSMGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQRYDFHRIT-ADVIA 181
Query: 591 T-LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL--SLLGQRISVPLVQELVGL 647
L + S+E +E ++ AL+ +A +DGS+RDA L+Q LG++++ V E++G
Sbjct: 182 DRLMELMSEEHVEAEEKALRYVARMADGSMRDALSLLDQCIAFYLGKKLTYENVLEVLGT 241
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD--------ILAG 699
+ LLD L+ D + + ++E G E L+ ITD +LAG
Sbjct: 242 VDISVYARLLDSILANDVTEVIGIVGKVVEQGRE-------LSQFITDFIWYLRNLLLAG 294
Query: 700 SYDFTKD----RHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALL 755
D + + + ++ ++ E E + + ++ LS+ Q+R S K AL+
Sbjct: 295 KGDASMEALEVSAEQLSLMQEKTAQVEEETVIRYIRILSDLLNQIRFSTSKRVLAEVALI 354
Query: 756 QLAPDQ 761
++ Q
Sbjct: 355 KMCRPQ 360
>gi|336407150|ref|ZP_08587784.1| hypothetical protein HMPREF0127_05097 [Bacteroides sp. 1_1_30]
gi|423216289|ref|ZP_17202814.1| DNA polymerase III, subunit gamma and tau [Bacteroides
xylanisolvens CL03T12C04]
gi|335948251|gb|EGN09968.1| hypothetical protein HMPREF0127_05097 [Bacteroides sp. 1_1_30]
gi|392691140|gb|EIY84391.1| DNA polymerase III, subunit gamma and tau [Bacteroides
xylanisolvens CL03T12C04]
Length = 621
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 179/352 (50%), Gaps = 8/352 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS-L 472
KY P TF +VGQ + L NA+ +K+ Y+F GP G GKT+CARIFA+ +NC +
Sbjct: 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMTPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ C C SC++ + +S NI E+ N + I L++ + +Y++++ D+
Sbjct: 70 ADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDE 129
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ PR +FIL ++ + I+SRCQ + F ++ D + L
Sbjct: 130 VHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVNHL 189
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDE 651
++ASKEGI + +AL +IA ++DG +RDA +Q +S G I+ V + + ++ E
Sbjct: 190 SYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLDYE 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR-- 709
L D L + + I+ G + ++ L++ D+L G T
Sbjct: 250 YYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLEVG 309
Query: 710 ---RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R+ ++ Q K + L +A+K +E + R+S +K + L+Q+A
Sbjct: 310 ASIRQRYQEQA-QKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQVA 360
>gi|336414606|ref|ZP_08594952.1| hypothetical protein HMPREF1017_02060 [Bacteroides ovatus
3_8_47FAA]
gi|335933718|gb|EGM95720.1| hypothetical protein HMPREF1017_02060 [Bacteroides ovatus
3_8_47FAA]
Length = 621
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 179/352 (50%), Gaps = 8/352 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS-L 472
KY P TF +VGQ + L NA+ +K+ Y+F GP G GKT+CARIFA+ +NC +
Sbjct: 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMTPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ C C SC++ + +S NI E+ N + I L++ + +Y++++ D+
Sbjct: 70 ADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDE 129
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ PR +FIL ++ + I+SRCQ + F ++ D + L
Sbjct: 130 VHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVNHL 189
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDE 651
++ASKEGI + +AL +IA ++DG +RDA +Q +S G I+ V + + ++ E
Sbjct: 190 SYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLDYE 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR-- 709
L D L + + I+ G + ++ L++ D+L G T
Sbjct: 250 YYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLEVG 309
Query: 710 ---RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R+ ++ Q K + L +A+K +E + R+S +K + L+Q+A
Sbjct: 310 ASIRQRYQEQA-QKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQVA 360
>gi|298482983|ref|ZP_07001165.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. D22]
gi|298270955|gb|EFI12534.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. D22]
Length = 621
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 179/352 (50%), Gaps = 8/352 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS-L 472
KY P TF +VGQ + L NA+ +K+ Y+F GP G GKT+CARIFA+ +NC +
Sbjct: 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMTPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ C C SC++ + +S NI E+ N + I L++ + +Y++++ D+
Sbjct: 70 ADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDE 129
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ PR +FIL ++ + I+SRCQ + F ++ D + L
Sbjct: 130 VHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVNHL 189
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDE 651
++ASKEGI + +AL +IA ++DG +RDA +Q +S G I+ V + + ++ E
Sbjct: 190 SYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLDYE 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR-- 709
L D L + + I+ G + ++ L++ D+L G T
Sbjct: 250 YYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLEVG 309
Query: 710 ---RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R+ ++ Q K + L +A+K +E + R+S +K + L+Q+A
Sbjct: 310 ASIRQRYQEQA-QKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQVA 360
>gi|148984597|ref|ZP_01817865.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
SP3-BS71]
gi|149026346|ref|ZP_01836501.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
SP23-BS72]
gi|225856531|ref|YP_002738042.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
P1031]
gi|307067463|ref|YP_003876429.1| DNA polymerase III subunits gamma/tau [Streptococcus pneumoniae
AP200]
gi|387757269|ref|YP_006064248.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
OXC141]
gi|410476304|ref|YP_006743063.1| DNA-directed DNA polymerase III subunit gamma and tau
[Streptococcus pneumoniae gamPNI0373]
gi|418075966|ref|ZP_12713205.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47502]
gi|418102583|ref|ZP_12739659.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae NP070]
gi|418231928|ref|ZP_12858516.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA07228]
gi|418236371|ref|ZP_12862939.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA19690]
gi|419470818|ref|ZP_14010677.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA07914]
gi|419475258|ref|ZP_14015099.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA14688]
gi|419479693|ref|ZP_14019500.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA19101]
gi|419486413|ref|ZP_14026179.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA44128]
gi|419499386|ref|ZP_14039085.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA47597]
gi|419503667|ref|ZP_14043338.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA47760]
gi|421208689|ref|ZP_15665711.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2070005]
gi|421244687|ref|ZP_15701189.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2081685]
gi|421314031|ref|ZP_15764621.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA47562]
gi|444387254|ref|ZP_21185277.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PCS125219]
gi|444390013|ref|ZP_21187928.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PCS70012]
gi|444391540|ref|ZP_21189360.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PCS81218]
gi|444394357|ref|ZP_21191910.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PNI0002]
gi|444397311|ref|ZP_21194794.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PNI0006]
gi|444399986|ref|ZP_21197412.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PNI0007]
gi|444408525|ref|ZP_21205160.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PNI0010]
gi|444411122|ref|ZP_21207591.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PNI0076]
gi|444411792|ref|ZP_21208118.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PNI0153]
gi|444416216|ref|ZP_21212408.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PNI0199]
gi|444416925|ref|ZP_21212993.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PNI0360]
gi|444421130|ref|ZP_21216883.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PNI0427]
gi|444423169|ref|ZP_21218792.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PNI0446]
gi|147922988|gb|EDK74103.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
SP3-BS71]
gi|147929308|gb|EDK80307.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
SP23-BS72]
gi|225724656|gb|ACO20508.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
P1031]
gi|301799858|emb|CBW32433.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
OXC141]
gi|306409000|gb|ADM84427.1| DNA polymerase III, gamma/tau subunits [Streptococcus pneumoniae
AP200]
gi|353749755|gb|EHD30398.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47502]
gi|353776749|gb|EHD57224.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae NP070]
gi|353888234|gb|EHE68010.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA07228]
gi|353892603|gb|EHE72351.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA19690]
gi|379545534|gb|EHZ10673.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA07914]
gi|379561596|gb|EHZ26613.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA14688]
gi|379570859|gb|EHZ35818.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA19101]
gi|379588028|gb|EHZ52874.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA44128]
gi|379602440|gb|EHZ67211.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA47597]
gi|379609265|gb|EHZ74006.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA47760]
gi|395575645|gb|EJG36210.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2070005]
gi|395609864|gb|EJG69948.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2081685]
gi|395914531|gb|EJH25375.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA47562]
gi|406369249|gb|AFS42939.1| DNA-directed DNA polymerase III gamma and tau subunits
[Streptococcus pneumoniae gamPNI0373]
gi|429317698|emb|CCP37493.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
SPN034156]
gi|429319240|emb|CCP32486.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
SPN034183]
gi|429321055|emb|CCP34460.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
SPN994039]
gi|429322875|emb|CCP30501.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
SPN994038]
gi|444253349|gb|ELU59805.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PCS125219]
gi|444256476|gb|ELU62814.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PCS70012]
gi|444259968|gb|ELU66276.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PNI0006]
gi|444261424|gb|ELU67728.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PNI0002]
gi|444265374|gb|ELU71386.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PCS81218]
gi|444267587|gb|ELU73484.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PNI0007]
gi|444269729|gb|ELU75532.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PNI0010]
gi|444275124|gb|ELU80751.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PNI0153]
gi|444275752|gb|ELU81364.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PNI0076]
gi|444277908|gb|ELU83398.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PNI0199]
gi|444283118|gb|ELU88326.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PNI0427]
gi|444284863|gb|ELU89971.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PNI0360]
gi|444287480|gb|ELU92406.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
PNI0446]
Length = 551
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 175/337 (51%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVNLADIKSSLQ 338
>gi|311028952|ref|ZP_07707042.1| DNA polymerase III subunits gamma and tau [Bacillus sp. m3-13]
Length = 563
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 193/364 (53%), Gaps = 23/364 (6%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+TF D+VGQ + + L NA++++K Y+F GP GTGKTS A+I A+A+
Sbjct: 3 YQALYRVFRPQTFADVVGQEHITKTLQNALLQQKFSHAYLFSGPRGTGKTSAAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C++C G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECSACKGITDGSISDVIEIDAASNNGVDEIRDIRDKVKYAPSSVKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ +P IISRCQ+F F ++
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRCQRFDFKRITGES 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVP----LVQE 643
I+ L + + IE + AL +IA ++G +RDA LSL+ Q IS VQ+
Sbjct: 183 IVGRLATVLQAQEIEAEPQALAIIARAAEGGMRDA------LSLMDQAISFSNGLLTVQD 236
Query: 644 ---LVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--- 697
+ G +S + D+++ + + +L + ++G +P + L D+L
Sbjct: 237 ALAITGSVSQSFMTDIVNGLYHKNVAQALDSLNQVFQSGKDPARFLEDLIFYYRDMLLYK 296
Query: 698 -AGSYDFTKDR-HRRKFFRRQPLSKEEM--EKLRQALKTLSEAEKQLRMSNDKLTWLTAA 753
A + + DR + F+R EE+ E + + + L++++++++ +N +L A
Sbjct: 297 TAPNLEQILDRVQVDEAFQR---FAEEIPAETIYETIDILNKSQQEMKWTNHPRIYLEVA 353
Query: 754 LLQL 757
+++L
Sbjct: 354 IVKL 357
>gi|312870907|ref|ZP_07731012.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
3008A-a]
gi|311093597|gb|EFQ51936.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
3008A-a]
Length = 583
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 199/376 (52%), Gaps = 16/376 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +++ PRTF +VGQ+ + L N++ R K+ ++F GP GTGKTSCA+IFA+A+
Sbjct: 3 YQALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C++C++ D+G +I E+ N + I + D + + Y++
Sbjct: 63 NCMDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ +
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +E I D+ +L++IA +DG +RD+ L+Q LS +I+ + G
Sbjct: 183 LVARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITG 242
Query: 647 LISDEKLVDL-LDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT-VITDILAGSYDFT 704
K+ L LDL L+ T ++ + ++ G ++ ++ V+ +LA D T
Sbjct: 243 YADQVKIEALFLDL-LNKKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTT 301
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYV 764
LS +E+LR L + + L+++ND L L Q P + +V
Sbjct: 302 VTF----------LSANYLEQLR--LISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFV 349
Query: 765 LPSSSADTSFSHSPLD 780
+ S+ D + + S D
Sbjct: 350 VRISTQDVNATVSQTD 365
>gi|251782781|ref|YP_002997084.1| DNA polymerase III subunits gamma and tau [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|410495161|ref|YP_006905007.1| DNA polymerase III subunits gamma and tau [Streptococcus
dysgalactiae subsp. equisimilis AC-2713]
gi|417927044|ref|ZP_12570432.1| DNA polymerase III, subunit gamma and tau [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|242391411|dbj|BAH81870.1| DNA polymerase III subunits gamma and tau [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|340764918|gb|EGR87444.1| DNA polymerase III, subunit gamma and tau [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|410440321|emb|CCI62949.1| DNA polymerase III subunits gamma and tau [Streptococcus
dysgalactiae subsp. equisimilis AC-2713]
Length = 559
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 112/367 (30%), Positives = 187/367 (50%), Gaps = 15/367 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVNGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQRA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L I KEG+ + DAL LIA R++G +RDA L+Q LSL ++++ + +E+
Sbjct: 182 IREHLASILDKEGLTYEVDALNLIARRAEGGMRDALSILDQALSLSPDDQVTMAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + + ++ L I ++G MS+ A TD+LA D
Sbjct: 242 GSISMVALDDYVQHLMENQATQALQALETIYDSGKS----MSRFA---TDLLAYLRDLLV 294
Query: 706 -----DRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760
D R+ LS ME++ Q + ++ +++ + +QLA +
Sbjct: 295 VKAGGDNQRQSALFDTNLSL-PMERIFQMIAVVTNHLPEIKKGTHPRIYAEMMTIQLAKE 353
Query: 761 QQYVLPS 767
+ LPS
Sbjct: 354 EGVALPS 360
>gi|262409631|ref|ZP_06086171.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_22]
gi|294647112|ref|ZP_06724716.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CC
2a]
gi|294807901|ref|ZP_06766682.1| DNA polymerase III, subunit gamma and tau [Bacteroides
xylanisolvens SD CC 1b]
gi|345509527|ref|ZP_08789123.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D1]
gi|229447047|gb|EEO52838.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D1]
gi|262352484|gb|EEZ01584.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_22]
gi|292637529|gb|EFF55943.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CC
2a]
gi|294444899|gb|EFG13585.1| DNA polymerase III, subunit gamma and tau [Bacteroides
xylanisolvens SD CC 1b]
Length = 621
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 179/352 (50%), Gaps = 8/352 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS-L 472
KY P TF +VGQ + L NA+ +K+ Y+F GP G GKT+CARIFA+ +NC +
Sbjct: 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMTPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ C C SC++ + +S NI E+ N + I L++ + +Y++++ D+
Sbjct: 70 ADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDE 129
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ PR +FIL ++ + I+SRCQ + F ++ D + L
Sbjct: 130 VHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVNHL 189
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDE 651
++ASKEGI + +AL +IA ++DG +RDA +Q +S G I+ V + + ++ E
Sbjct: 190 SYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLDYE 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR-- 709
L D L + + I+ G + ++ L++ D+L G T
Sbjct: 250 YYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLEVG 309
Query: 710 ---RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R+ ++ Q K + L +A+K +E + R+S +K + L+Q+A
Sbjct: 310 ASIRQRYQEQA-QKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQVA 360
>gi|375306307|ref|ZP_09771606.1| DNA polymerase III subunit gamma/tau [Paenibacillus sp. Aloe-11]
gi|375081718|gb|EHS59927.1| DNA polymerase III subunit gamma/tau [Paenibacillus sp. Aloe-11]
Length = 584
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 179/358 (50%), Gaps = 11/358 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H L + + P+ F+D+VGQ + Q L NA+ + Y+F GP GTGKTS A+I A+A+
Sbjct: 3 HIALYRAWRPQAFKDMVGQQHIIQTLQNAIRENRTSHAYLFSGPRGTGKTSAAKILAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ P+PC C +C G +++E+ N E I DL D + + ++++
Sbjct: 63 NCEHGPAPEPCNECEACKRITAGAVMDVQEIDAASNRGVEEIRDLRDKVKYAPTEVRHKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+FIL ++ +P IISRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHRIPATIISRCQRFDFRRVSLEE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVG 646
L I +E I+ D DAL+ IA SDG +RDA L+Q+ S ++ V ++ G
Sbjct: 183 QTERLDLICRQENIQADADALQYIARLSDGGMRDAVSVLDQISSFTDGPVTYQQVLDMTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-----AGSY 701
I+ E+ L L D ++ + M+ G M L D+L +
Sbjct: 243 GIASEQFGKLALALLKEDVGTVLQMIENFMQEGKSADKCMENLLYYFRDLLMIKMVPQAT 302
Query: 702 DFTKDRHRRKFFRR--QPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
T+ + FR +KE++ + + TL+ + +++ + T ALL+L
Sbjct: 303 KMTERVLDSEQFREIADAFTKEQLFAM---IDTLNRYQSEMKYAVQPQTLFEVALLKL 357
>gi|254414024|ref|ZP_05027792.1| DNA polymerase III, subunits gamma and tau [Coleofasciculus
chthonoplastes PCC 7420]
gi|196179160|gb|EDX74156.1| DNA polymerase III, subunits gamma and tau [Coleofasciculus
chthonoplastes PCC 7420]
Length = 379
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 124/365 (33%), Positives = 191/365 (52%), Gaps = 25/365 (6%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
KY P+ +LVGQ L+ + L+N + + +++F GP GTGKTS ARIFA++LNC S
Sbjct: 13 KYRPQNLSELVGQPLIVRTLTNELKTGNLPNVFLFDGPRGTGKTSTARIFAKSLNCLSSS 72
Query: 474 QPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
QP PCG C SC S G + +++E+ N + I +L+ N ++YRI D
Sbjct: 73 QPTLTPCGTCLSCRSICSGSNLDVRELDAASNNGVDDIRELI-NYSKLSTTNRYRIIYLD 131
Query: 532 DCDTLSPDSWSAISKVV-DRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
+C LS + +A K+ DR P +FIL ++ + L IISRCQ F F ++ DI
Sbjct: 132 ECQMLSRSAQNAALKLFEDRLPN-TIFILATTESEKLLDTIISRCQHFQFRRLSTQDITE 190
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL-LGQRISVPLVQELVGLIS 649
L I E I + +AL+LIA S G +RD+ LEQL++ +I V++++G I
Sbjct: 191 RLSQITLNEKISANPEALRLIAQHSQGGMRDSVQLLEQLAMSTNGKIEPHHVRDVIGSIP 250
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIM----ETGVEPLALMSQLATVITDILAGSYDFTK 705
+ LVDL +++ DT + NL + + GVEP+ L+ +L + D+L + ++
Sbjct: 251 ADSLVDLC-VSIFQDTPQRLHNLMALSNQLNDEGVEPVHLVKELLAIHRDLLV--FQLSQ 307
Query: 706 DRHRRK-----FFRRQPLSKEE-------MEKLRQALKTLSEAEKQLRMSNDKLTWLTAA 753
D + K F LS E + ++ L TL A ++ S++ L L
Sbjct: 308 DTNSLKQGKVPFASLIDLSSIESLSQLVSIPEIHHRLLTLEAAALSIQQSSNPLIGLEIC 367
Query: 754 LLQLA 758
LLQLA
Sbjct: 368 LLQLA 372
>gi|354586365|ref|ZP_09004879.1| DNA polymerase III, subunits gamma and tau [Paenibacillus lactis
154]
gi|353181548|gb|EHB47086.1| DNA polymerase III, subunits gamma and tau [Paenibacillus lactis
154]
Length = 575
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 181/358 (50%), Gaps = 9/358 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H L + + P++F D+VGQ + Q L NA+ ++V Y+F GP GTGKTS A+I A+A+
Sbjct: 3 HIALYRAWRPQSFSDMVGQQHIIQTLQNAIREQRVSHAYLFSGPRGTGKTSAAKILAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C G +++E+ N E I DL + + + + ++
Sbjct: 63 NCEHGPAEEPCNTCEACRRITAGAVMDVQEIDAASNRGVEEIRDLREKVKYAPTEVRRKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+FIL ++ LP IISRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPAHVMFILATTEPHRLPATIISRCQRFDFRRVSLDE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVG 646
L+ I ++EGI + +AL IA SDG +RDA L+Q+ S G +S V ++ G
Sbjct: 183 QTGRLERICTEEGITAEPEALSYIARLSDGGMRDALSILDQIASFTGGTVSYQQVLDMTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
I+ E+ L D ++ + M+ G M L D+L D
Sbjct: 243 GIASEQFGRLAAALKQGDAGLVLQIVEQFMQEGKSADKCMENLLYYFRDLLMIKMVPDAD 302
Query: 707 RHRRKFFRRQPLSKEEM------EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ + P +EM E+L Q + TL+ + +++ ++ T ALL+L+
Sbjct: 303 KLTDRVL--NPAEFQEMAGAFSREELFQMIDTLNRYQGEMKYASQPQTLFEVALLKLS 358
>gi|336063958|ref|YP_004558817.1| DNA polymerase III subunit gamma/tau [Streptococcus pasteurianus
ATCC 43144]
gi|334282158|dbj|BAK29731.1| DNA polymerase III subunit gamma/tau [Streptococcus pasteurianus
ATCC 43144]
Length = 559
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 159/292 (54%), Gaps = 6/292 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQTVISSTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPNQVNGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K A
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKLAA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L I KE I ++DAL LIA ++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IREHLANILDKEEISYEEDALTLIAHCAEGGMRDALSILDQALSLTPDNHVSLAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + L+ T + NL I ++G MS+ AT + + L
Sbjct: 242 GSISMTALDDFVANVLANQTSQALTNLETIFDSGKS----MSRFATDLLNYL 289
>gi|194246446|ref|YP_002004085.1| DNA polymerase III [Candidatus Phytoplasma mali]
gi|193806803|emb|CAP18230.1| DNA polymerase III, tau subunit [Candidatus Phytoplasma mali]
Length = 580
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 179/345 (51%), Gaps = 9/345 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
KY P+ F+++VGQ ++ Q L NA++ +K+ Y+F G GTGKT+ A+IF++ +NC + +
Sbjct: 9 KYRPKFFKNVVGQKIIIQTLRNAIIYKKLSHCYLFSGNKGTGKTTLAKIFSKTINCLNNK 68
Query: 474 QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDC 533
CG+C +C D+ S +I E+ E I DL + + +Y+I++ D+
Sbjct: 69 DGDCCGYCEACNIIDKQNS-DIIEIDGASYNGVEEIRDLKNKINYKTNFLKYKIYIIDEV 127
Query: 534 DTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQ 593
L+ ++++A+ K ++ P+ V+FI ++ +P I+SR Q F ++ II L
Sbjct: 128 HVLTGNAFNALLKTLEEPPKHVIFIFATTESHKIPETILSRTQHFHLLNIQKQHIIEKLT 187
Query: 594 WIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVGLISDEK 652
I E I IDK+AL+ IA S GSLRDA L+Q+ S I+V VQE+ G + +
Sbjct: 188 EIVDLEKISIDKEALEKIAFYSQGSLRDALNLLDQISSYETDLITVTCVQEIKGAVEESN 247
Query: 653 LVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKF 712
L+ LL + D + + L I G L L + L ++ + L D
Sbjct: 248 LIKLLQYTFNKDLNSIISLLDKINNEGKNILILFNDLIIILKNCLLEELLSPHD------ 301
Query: 713 FRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
++ L +E LKTL + ++ L+ S+ K ++L +Q+
Sbjct: 302 -KKIKLENFSLELANYVLKTLIDYQQNLKNSDLKESFLEIIFIQM 345
>gi|169351620|ref|ZP_02868558.1| hypothetical protein CLOSPI_02400 [Clostridium spiroforme DSM 1552]
gi|169291842|gb|EDS73975.1| DNA polymerase III, subunit gamma and tau [Clostridium spiroforme
DSM 1552]
Length = 593
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 196/378 (51%), Gaps = 13/378 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L + Y P+TF ++ GQ + L NA+ ++ Y+F GP GTGKT+ A++ A+AL
Sbjct: 3 YKALYRSYRPQTFDEVAGQEHIVTTLKNAIKENRIAHAYLFAGPRGTGKTTVAKLLAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + P PC C +C + + ++ E+ N + + DL+D + + +Y++
Sbjct: 63 NCTG-DNP-PCDNCPNCKAITASQHPDVIEIDAASNNGVDEVRDLIDKVKYAPINGKYKV 120
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ +S +++A+ K ++ P ++FIL ++ + IISRCQ+F F K+ D D
Sbjct: 121 YIIDEVHMMSQGAFNALLKTLEEPPAHIIFILATTEPHKILPTIISRCQRFDFKKVDDQD 180
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGL 647
I+ L+++ E E + DALKL+A ++G +RDA LEQ ++S+ V ++ GL
Sbjct: 181 IVSRLEYVLKNENKEYELDALKLVAKLAEGGMRDALSILEQCLAYNDKLSIDSVNKVYGL 240
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR 707
+S + + + LS D + +++L ++ T ++ L L V+ D++ Y T+D
Sbjct: 241 LSMDNKIIFIKKLLSQDLKSVLQSLDNMLSTSIDIKRLTYDLIDVLKDVII--YKNTQDA 298
Query: 708 HRRKFFRRQP----LSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA---PD 760
++ +S +E+ + + L +A S + T+ ALL++ D
Sbjct: 299 SILFVLTQKDVENLISYISVEESFEIIDILVDASNHYNYSLNADTYFELALLKICNKIKD 358
Query: 761 QQYVLPSSSADTSFSHSP 778
+ +L AD ++P
Sbjct: 359 ENKIL--VKADNIIENAP 374
>gi|168184981|ref|ZP_02619645.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum
Bf]
gi|237793342|ref|YP_002860894.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
Ba4 str. 657]
gi|182671955|gb|EDT83916.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum
Bf]
gi|229262232|gb|ACQ53265.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum
Ba4 str. 657]
Length = 541
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 192/356 (53%), Gaps = 10/356 (2%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ PRTF+++VGQ + L N V+ +++ Y+F G GTGKTS A+I ++A+NC
Sbjct: 6 LYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNCL 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ--YRIF 528
+ + +PC C C + G ++ E+ E I ++++N+ PP + +++
Sbjct: 66 NPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENV--KYPPQEGKNKVY 123
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ L+ ++ +A K ++ P V+FIL ++ LP I+SRCQ+F F ++K+ +I
Sbjct: 124 IMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIKNEEI 183
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGL 647
L+ I S++GI D +L LIA SDG++RDA L+Q+ G ++ V +++GL
Sbjct: 184 FERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDMLGL 243
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR 707
+++E L+ + + + D +++ + I+ +G + + + T + +IL +
Sbjct: 244 VTNENLLRITNSIIEKDVEKSMRIIEDIVLSGKDIYNFIKDMITHLRNILMVKVSKNPNE 303
Query: 708 HRRKFFRRQPLSKEEMEKLR-----QALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
L KE+ EK+R + +K L EAE+Q + +L A+L++
Sbjct: 304 ILDMSSENIDLVKEQSEKIRIEEIMRDIKILQEAEQQSKWVKQNRIYLELAVLKMC 359
>gi|418189091|ref|ZP_12825606.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47373]
gi|353856233|gb|EHE36202.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA47373]
Length = 551
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|288817749|ref|YP_003432096.1| DNA polymerase III gamma/tau subunit [Hydrogenobacter thermophilus
TK-6]
gi|384128511|ref|YP_005511124.1| DNA polymerase III subunits gamma and tau [Hydrogenobacter
thermophilus TK-6]
gi|288787148|dbj|BAI68895.1| DNA polymerase III gamma/tau subunit [Hydrogenobacter thermophilus
TK-6]
gi|308751348|gb|ADO44831.1| DNA polymerase III, subunits gamma and tau [Hydrogenobacter
thermophilus TK-6]
Length = 483
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 156/271 (57%), Gaps = 2/271 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
+KY P+ F+D+VGQ V + L NAV +KV Y+F G GTGKT+ AR+ ++LNC
Sbjct: 5 FARKYRPKFFKDVVGQEPVKRILLNAVRLQKVSSAYIFAGSRGTGKTTVARLLTKSLNCI 64
Query: 471 SLEQP-KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFV 529
+L++ +PCG C +C+S DRG ++ E+ + + I + D + + +Y++++
Sbjct: 65 NLQESGEPCGQCENCLSIDRGSFPDLIEIDAASSRGIDDIRAIRDAVSYTPIKGRYKVYI 124
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ L+ ++++A+ K ++ P R VFIL ++ + + I+SRCQ+ F K+ +I+
Sbjct: 125 LDEAHMLTKEAFNALLKTLEEPPPRTVFILCTTEYEKIIPTILSRCQRLIFTKLSQEEIV 184
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLI 648
L+ I +E I D+ +L IA SDG +RDA L+Q+S + I +++E +G++
Sbjct: 185 QRLKHICQEENISYDEKSLITIAKLSDGGMRDAVSLLDQVSTYAEGNIKEGVLEEFLGIV 244
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETG 679
S E++ + L + L + + LR I G
Sbjct: 245 SQERVREFLRMLLESRVDEAIDFLRQITTRG 275
>gi|42525061|ref|NP_970441.1| DNA polymerase III gamma and tau subunits [Bdellovibrio
bacteriovorus HD100]
gi|39577272|emb|CAE81095.1| DNA polymerase III gamma and tau subunits [Bdellovibrio
bacteriovorus HD100]
Length = 621
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 161/291 (55%), Gaps = 1/291 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q + +K+ P++F D+VGQN + Q LSNA+ ++ +F GP GTGKTS ARI A+AL
Sbjct: 19 YQVIARKWRPQSFTDVVGQNHITQTLSNALKNGRLPHALLFTGPRGTGKTSSARILAKAL 78
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
C + + PC C SC G S ++ E+ N ++I +L D + +Y+I
Sbjct: 79 RCPNAQNFVPCNDCYSCNEIAGGSSIDVIEIDGASNNGVDAIRELRDTVAFMPSSGKYKI 138
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFI+ ++ + +P I+SRCQ+F F ++
Sbjct: 139 YIIDEVHMLSTSAFNALLKTLEEPPAHVVFIMATTEVHKIPQTILSRCQRFDFRRISTRS 198
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I L+ I +EG+ D +AL ++A + DGS+RD++ L+Q ++ ++ V E++G
Sbjct: 199 ITERLKLICDREGVTADDEALWVVARQGDGSMRDSQSLLDQVITFANGPLTRASVVEILG 258
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
L L + L+ + ++ +K + I G EP L +I ++L
Sbjct: 259 LTDRALLFETLNALIDRNSQAVLKVIEKIAAAGFEPHLYSQDLLEMIRNLL 309
>gi|343520684|ref|ZP_08757653.1| DNA polymerase III, subunit gamma and tau [Parvimonas sp. oral
taxon 393 str. F0440]
gi|343397642|gb|EGV10176.1| DNA polymerase III, subunit gamma and tau [Parvimonas sp. oral
taxon 393 str. F0440]
Length = 544
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 163/282 (57%), Gaps = 1/282 (0%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q + +++ P+ F +VGQ + + L N + +G Y+F G GTGKTSCA+IFARA+N
Sbjct: 3 QAIYREFRPKDFTRVVGQEHIVEILKNQIRTGNLGHAYLFSGIRGTGKTSCAKIFARAVN 62
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
C + PC C +C K+ + E+ N + I +L + ++ +Y+++
Sbjct: 63 CLNPIDGNPCNECENCKMILEDKALEVVEMDAASNRRIDDIRELKEKVIYPPQIVKYKVY 122
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ ++ + ++A+ K+++ P+ ++FIL ++ +D LP IISRCQ+F F ++ ++DI
Sbjct: 123 IIDEAHMITNEGFNALLKILEEPPKHLIFILATTEIDKLPDTIISRCQRFEFKRINNSDI 182
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVGL 647
+ + ++ + +E+++D + LI+ S G++RDA L+Q+ G ++I++ + E +GL
Sbjct: 183 VKNINYVLNNLNVEVEEDGINLISELSSGAMRDALSLLDQVVATGKEKITIEDINECLGL 242
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689
++ L +L L++ T++ R ++E G P ++ L
Sbjct: 243 VNLNMLFELSKSILNSSKNETIETFRNLVENGKTPHNIIIDL 284
>gi|262383581|ref|ZP_06076717.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_33B]
gi|262294479|gb|EEY82411.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_33B]
Length = 586
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 155/288 (53%), Gaps = 2/288 (0%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC-QS 471
+KY P TFR +VGQ + L NA+ K+ Y+F GP G GKTSCARIFA+ +NC
Sbjct: 9 RKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINCLNP 68
Query: 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
+ C C SC + + +S NI E+ N + I L+D + P +Y++F+ D
Sbjct: 69 TADGEACNACESCRAFNEQRSYNIHELDAASNNSVDDIRTLIDQVRIPPPIGKYKVFIID 128
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+ L+ +++A K ++ P +FIL ++ + I+SRCQ + F ++ AD++
Sbjct: 129 EVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYDFSRISIADMVEH 188
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISD 650
LQ+++S+EG+ + +AL +IA ++DG +RDA +Q +S I+ V + + ++
Sbjct: 189 LQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFTNGNITYQAVIDNLNVLDY 248
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA 698
E L D LS + ++ L I+ G + +++ LA D+L
Sbjct: 249 EYYFRLTDAVLSGNVRASLLILNEILGKGFDGQNIITGLAGHFRDLLV 296
>gi|336411099|ref|ZP_08591568.1| hypothetical protein HMPREF1018_03586 [Bacteroides sp. 2_1_56FAA]
gi|335943363|gb|EGN05203.1| hypothetical protein HMPREF1018_03586 [Bacteroides sp. 2_1_56FAA]
Length = 614
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 179/352 (50%), Gaps = 8/352 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
KY P TF +VGQ + L NA+ +K+ Y+F GP G GKT+CARIFA+ +NC +L
Sbjct: 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLT 69
Query: 474 QP-KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ C C SC++ + +S NI E+ N + I L++ + +Y++++ D+
Sbjct: 70 ADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDE 129
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ PR +FIL ++ + I+SRCQ + F ++ D ++ L
Sbjct: 130 VHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVDDTVHHL 189
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDE 651
++ASKEGI + +AL +IA ++DG +RDA +Q +S G I+ V E + ++ E
Sbjct: 190 TYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNVLDYE 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR-- 709
L D L + + ++ G + ++ L++ D+L T
Sbjct: 250 YYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAATLQLLEVG 309
Query: 710 ---RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R+ ++ Q K + L +A+K ++ + R S +K + L+Q+A
Sbjct: 310 AGIRQRYQEQA-QKCALPFLYRAMKLCNDCDMNYRASKNKRLLVELTLIQVA 360
>gi|294674298|ref|YP_003574914.1| DNA polymerase III subunits gamma and tau [Prevotella ruminicola
23]
gi|294473273|gb|ADE82662.1| DNA polymerase III, subunits gamma and tau [Prevotella ruminicola
23]
Length = 601
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 184/355 (51%), Gaps = 14/355 (3%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ-SL 472
KY P +F +VGQ + L NAV K+ Y+F GP G GKT+CARIFA+A+NCQ
Sbjct: 9 KYRPLSFDTVVGQAALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCQHPT 68
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QYRIFVF 530
+ + C C SC S + +S NI E+ N E I L++ T PP +Y++F+
Sbjct: 69 AEGEACNECESCQSFNEQRSLNIFELDAASNNSVEHIKTLMEQ--TRIPPQLGRYKVFII 126
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A K ++ P V+FIL ++ + I+SRCQ + F +M + I
Sbjct: 127 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTIRNTID 186
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
L+ +A +EGI ++ AL +IA ++DG +RDA +Q + Q I+ V E + ++
Sbjct: 187 HLKHVAEQEGITYEEQALAVIAEKADGGMRDALSIFDQAASFCQGNITYEKVIEDLNVLD 246
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT----- 704
E ++DLA+ + + L ++ G + L+ LA + ++L T
Sbjct: 247 SENYFKIIDLAIDNKVSDIMVLLNGVINKGFDGGLLIQGLAKHVRNVLMARDPQTLPLLE 306
Query: 705 -KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
D+ R ++ + K ++ L ALK +++ + R S++K + L+++A
Sbjct: 307 VSDQMRARY--EEQAKKCQITFLYDALKLMNQCDINYRQSSNKRLLVELTLIEIA 359
>gi|390946431|ref|YP_006410191.1| DNA polymerase III subunits gamma and tau [Alistipes finegoldii DSM
17242]
gi|390423000|gb|AFL77506.1| DNA polymerase III, subunit gamma/tau [Alistipes finegoldii DSM
17242]
Length = 767
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 180/354 (50%), Gaps = 11/354 (3%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P TF +VGQ + L NA+ R ++ Y+F GP G GKT+CARIFA+A+NC S
Sbjct: 9 RKYRPATFASVVGQKHITSTLKNAIERAQLAHAYLFCGPRGVGKTTCARIFAKAINCLSP 68
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ C C SC S + G+S NI E+ N E I L++ + +Y +F+ D+
Sbjct: 69 NGAEACNECESCRSFNEGRSLNIHELDAASNNSVEDIRTLIEQVRIIPQVGRYSVFIIDE 128
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ P +FIL ++ + I+SRCQ + F +++ D + L
Sbjct: 129 VHMLSAAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIYDFNRIRVEDSVEYL 188
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDA-EMTLEQLSLLGQRISVPLVQELVGLISDE 651
++IA +E I D+++L LIA ++DG +RDA M + +S G + V + + ++ +
Sbjct: 189 KYIAGQENISADEESLNLIAQKADGGMRDALSMFDKAVSFCGTTLDYRNVAQTLNVLDYD 248
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS-------YDFT 704
+ ++ L+ + V+ + ++ G + L + D+L + T
Sbjct: 249 TYFSVTEMLLAGNYVDVLVTFDTVLSKGFSGQTFTAGLNRHMRDLLMAKRPETLRLIEMT 308
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R +R Q +E L A+ L+E + ++R S+++ + L+++A
Sbjct: 309 GTLLER--YRTQ-AGACNVEFLFGAISILTELDGKIRQSSNQRLLVELGLMKIA 359
>gi|347754375|ref|YP_004861939.1| DNA polymerase III subunits gamma and tau [Candidatus
Chloracidobacterium thermophilum B]
gi|347586893|gb|AEP11423.1| DNA polymerase III, subunits gamma and tau [Candidatus
Chloracidobacterium thermophilum B]
Length = 591
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 163/297 (54%), Gaps = 6/297 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q + +K+ P+ F D+VGQ + +ALSNA+ ++ Y+F GP G GKT+CAR+FARAL
Sbjct: 3 YQVIARKWRPQQFEDVVGQAAITRALSNALRTGRLHHAYLFAGPRGVGKTTCARLFARAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP-SQYR 526
NC P PCG C SC G S ++ E+ + ++I +++ V +R +Y+
Sbjct: 63 NCAEGPTPTPCGVCPSCQETLTGNSLDVLEIDAASHTGVDNIREVIIATVGNRTARDRYK 122
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+F+ D+ LS S++A+ K ++ P VVFI+ ++ L LP I+SRCQ + F +
Sbjct: 123 VFIIDEVHMLSTSSFNALLKTLEEPPSHVVFIMATTELHKLPETILSRCQVYEF-RTVGV 181
Query: 587 DIIYT-LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLG--QRISVPLVQ 642
D+I L+ IA E + I + AL IA GSLRDA+ LEQ L+ G I V+
Sbjct: 182 DVIADRLRQIAEAEQVPISRAALVQIAQAGRGSLRDAQSALEQVLAFAGTSTEIDEAAVR 241
Query: 643 ELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAG 699
+ +GLI L ++++ +D + + ++ TG + + +L T + +L
Sbjct: 242 DALGLIGIGWLSEVVEALHRSDAAAVLMEVERLVRTGHDLRQFLRELMTYLRHLLVA 298
>gi|417312432|ref|ZP_12099146.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA04375]
gi|418227450|ref|ZP_12854069.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 3063-00]
gi|419493007|ref|ZP_14032734.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA47210]
gi|421289503|ref|ZP_15740255.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA54354]
gi|421304823|ref|ZP_15755479.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA62331]
gi|327390218|gb|EGE88561.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA04375]
gi|353883051|gb|EHE62860.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 3063-00]
gi|379595045|gb|EHZ59854.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA47210]
gi|395890763|gb|EJH01769.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA54354]
gi|395905485|gb|EJH16390.1| DNA polymerase III, subunit gamma and tau [Streptococcus pneumoniae
GA62331]
Length = 551
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 175/337 (51%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVNLADIKSSLQ 338
>gi|301311507|ref|ZP_07217434.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 20_3]
gi|423337802|ref|ZP_17315545.1| DNA polymerase III, subunit gamma and tau [Parabacteroides
distasonis CL09T03C24]
gi|300830593|gb|EFK61236.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 20_3]
gi|409235875|gb|EKN28685.1| DNA polymerase III, subunit gamma and tau [Parabacteroides
distasonis CL09T03C24]
Length = 586
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 156/288 (54%), Gaps = 2/288 (0%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC-QS 471
+KY P TFR +VGQ ++ L NA+ K+ Y+F GP G GKTSCARIFA+ +NC
Sbjct: 9 RKYRPSTFRSVVGQKSLSTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINCLNP 68
Query: 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
+ C C SC + + +S NI E+ N + I L+D + P +Y++F+ D
Sbjct: 69 TADGEACNACESCRAFNEQRSYNIHELDAASNNSVDDIRTLIDQVRIPPPIGKYKVFIID 128
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+ L+ +++A K ++ P +FIL ++ + I+SRCQ + F ++ AD++
Sbjct: 129 EVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYDFSRISIADMVEH 188
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISD 650
LQ+++S+EG+ + +AL +IA ++DG +RDA +Q +S I+ V + + ++
Sbjct: 189 LQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFTNGNITYQAVIDNLNVLDY 248
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA 698
E L D LS + ++ L I+ G + +++ LA D+L
Sbjct: 249 EYYFRLTDAILSGNVRASLLILNEILGKGFDGQNIITGLAGHFRDLLV 296
>gi|195953707|ref|YP_002121997.1| DNA polymerase III subunits gamma and tau [Hydrogenobaculum sp.
Y04AAS1]
gi|195933319|gb|ACG58019.1| DNA polymerase III, subunits gamma and tau [Hydrogenobaculum sp.
Y04AAS1]
Length = 421
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 155/270 (57%), Gaps = 1/270 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
+KY P+TF++L+GQ + A L NA + +K+ Y+F G GTGKT+ ARIFA+ LNC
Sbjct: 6 FARKYRPKTFKELIGQEIPATILKNAFLYQKIHHAYIFAGHKGTGKTTTARIFAKVLNCL 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ ++ +PC C +C + ++G ++ E+ N + I + + +Y++++
Sbjct: 66 NPQEGEPCNACPNCQAIEKGTFVDLIEMDAASNRGIDEIRAVREGASYLPMQGKYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P ++FIL ++ D + I SRCQK F + +I
Sbjct: 126 DEAHMLTKEAFNALLKTIEEPPPSLIFILCTTEFDKILPTIQSRCQKLVFSRASKENIKT 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVGLIS 649
L+ IA++E IEID++AL +++ +D S+RDA L+Q S G ++++ +V+ + G +
Sbjct: 186 YLRRIANQENIEIDEEALDVLSDLADDSMRDAASLLDQASTYGNNKVTIDIVKSMFGPVD 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETG 679
+ L+L + +DT + L I E G
Sbjct: 246 KASIRKFLELLIESDTKEAINMLNTINEKG 275
>gi|254453888|ref|ZP_05067325.1| DNA polymerase III, gamma and tau subunit [Octadecabacter arcticus
238]
gi|198268294|gb|EDY92564.1| DNA polymerase III, gamma and tau subunit [Octadecabacter arcticus
238]
Length = 586
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 162/292 (55%), Gaps = 6/292 (2%)
Query: 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466
++Q L +KY P TF DLVGQ+ + + L NA ++ ++ G GTGKT+ ARI A+
Sbjct: 8 KYQVLARKYRPETFADLVGQDAMVRTLKNAFAANRIAQAFIMTGIRGTGKTTTARIIAKG 67
Query: 467 LNCQSLE-----QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP 521
+NC ++ +PCG C +C++ G+ ++ E+ I ++++++
Sbjct: 68 MNCIGIDGQGGPTTEPCGKCENCVAIMEGRHVDVMEMDAASRTGVGDIREIIESVHYRAA 127
Query: 522 PSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFP 581
++Y++++ D+ LS ++++A+ K ++ P V FI ++ + +P ++SRCQ+F
Sbjct: 128 SARYKVYIIDEVHMLSVNAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDLR 187
Query: 582 KMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPL 640
+++ D I L+ IA+ EG EI DAL LI ++GS RDA+ L+Q +S S
Sbjct: 188 RIEPEDQIGLLRKIATAEGAEITDDALALITRAAEGSARDAQSLLDQAISHGAGETSADQ 247
Query: 641 VQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV 692
V+ ++GL +++DL D+ L + ++ L G +P+A++ LA +
Sbjct: 248 VRAMLGLADRGRVLDLFDMILKGQAADALQELSGQYADGADPMAILRDLAEI 299
>gi|349612185|ref|ZP_08891408.1| hypothetical protein HMPREF1027_00835 [Lactobacillus sp. 7_1_47FAA]
gi|348609014|gb|EGY58979.1| hypothetical protein HMPREF1027_00835 [Lactobacillus sp. 7_1_47FAA]
Length = 583
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 199/376 (52%), Gaps = 16/376 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +++ PRTF +VGQ+ + L N++ R K+ ++F GP GTGKTSCA+IFA+A+
Sbjct: 3 YQALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C++C++ D+G +I E+ N + I + D + + Y++
Sbjct: 63 NCMDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ +
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +E I D+ +L++IA +DG +RD+ L+Q LS +I+ + G
Sbjct: 183 LVNRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYKDTLAITG 242
Query: 647 LISDEKLVDL-LDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT-VITDILAGSYDFT 704
K+ L LDL L+ T ++ + ++ G ++ ++ V+ +LA D T
Sbjct: 243 YADQVKIEALFLDL-LNRKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTT 301
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYV 764
LS +E+LR L + + L+++ND L L Q P + +V
Sbjct: 302 VTF----------LSANYLEQLR--LISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFV 349
Query: 765 LPSSSADTSFSHSPLD 780
+ S+ D + + S D
Sbjct: 350 VRISTQDVNATVSQTD 365
>gi|325911570|ref|ZP_08173978.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII
143-D]
gi|325476556|gb|EGC79714.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII
143-D]
Length = 587
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 199/376 (52%), Gaps = 16/376 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +++ PRTF +VGQ+ + L N++ R K+ ++F GP GTGKTSCA+IFA+A+
Sbjct: 7 YQALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI 66
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C++C++ D+G +I E+ N + I + D + + Y++
Sbjct: 67 NCMDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKV 126
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ +
Sbjct: 127 YIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQ 186
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +E I D+ +L++IA +DG +RD+ L+Q LS +I+ + G
Sbjct: 187 LVARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITG 246
Query: 647 LISDEKLVDL-LDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT-VITDILAGSYDFT 704
K+ L LDL L+ T ++ + ++ G ++ ++ V+ +LA D T
Sbjct: 247 YADQVKIEALFLDL-LNKKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTT 305
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYV 764
LS +E+LR L + + L+++ND L L Q P + +V
Sbjct: 306 VTF----------LSANYLEQLR--LISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFV 353
Query: 765 LPSSSADTSFSHSPLD 780
+ S+ D + + S D
Sbjct: 354 VRISTQDVNATVSQTD 369
>gi|253999384|ref|YP_003051447.1| DNA polymerase III subunits gamma and tau [Methylovorus
glucosetrophus SIP3-4]
gi|253986063|gb|ACT50920.1| DNA polymerase III, subunits gamma and tau [Methylovorus
glucosetrophus SIP3-4]
Length = 610
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 152/258 (58%), Gaps = 1/258 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+ F LVGQ V +AL+NA+ ++++ Y+F G G GKT+ ARI A++L
Sbjct: 3 YQVLARKWRPKLFEALVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ PCG C++C+ DRG+ ++ EV N +S+ +LLDN + ++++
Sbjct: 63 NCETGITAHPCGVCSACVDIDRGRFVDMLEVDAASNTQVDSMRELLDNAQYAPTVGRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V FIL ++ +P ++SRC +F +M
Sbjct: 123 YIIDEVHMLSRSAFNAMLKTLEEPPAHVKFILATTDPQKMPVTVLSRCLQFNLRQMSTPA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I LQ + +KE I D AL+LI+ ++GS+RDA L+Q ++ G R++ V+ ++G
Sbjct: 183 ITSHLQEVLAKENIPSDSIALQLISRAANGSMRDALSLLDQAIAYGGNRVNESEVRAMLG 242
Query: 647 LISDEKLVDLLDLALSAD 664
I L LLD ++ D
Sbjct: 243 AIDQSYLYGLLDALIAQD 260
>gi|148988284|ref|ZP_01819731.1| DNA polymerase III, gamma and tau subunits [Streptococcus
pneumoniae SP6-BS73]
gi|147925965|gb|EDK77039.1| DNA polymerase III, gamma and tau subunits [Streptococcus
pneumoniae SP6-BS73]
Length = 551
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLPALDDYVASLSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|56698372|ref|YP_168745.1| DNA polymerase III subunits gamma and tau [Ruegeria pomeroyi DSS-3]
gi|56680109|gb|AAV96775.1| DNA polymerase III, gamma and tau subunits [Ruegeria pomeroyi
DSS-3]
Length = 583
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 161/299 (53%), Gaps = 6/299 (2%)
Query: 400 LGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSC 459
+ D + +Q L +KY P TF DLVGQ+ + + L NA ++ ++ G GTGKT+
Sbjct: 1 MSDAPSTPYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTT 60
Query: 460 ARIFARALNCQSLE-----QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLD 514
ARI A+ +NC + +PCG C C++ G+ ++ E+ I +++D
Sbjct: 61 ARIIAKGMNCIGPDGNGGPTTEPCGKCEHCVAIMEGRHVDVMEMDAASRTGVNDIREIID 120
Query: 515 NMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISR 574
++ ++Y+I++ D+ LS +++A+ K ++ P V FI ++ + +P ++SR
Sbjct: 121 SVRYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSR 180
Query: 575 CQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLG 633
CQ+F +++ D+I ++ IA EG +I +DAL LI ++GS RDA L+Q +S
Sbjct: 181 CQRFDLRRIEPEDMIALMRRIADAEGAQIAEDALALIVRAAEGSARDATSLLDQAISHGA 240
Query: 634 QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV 692
S V+ ++GL +++DL+D+ L D + L G +P+A++ LA +
Sbjct: 241 GETSAEQVRAMLGLADRGRVLDLMDMILRGDAGAALTELGAQYAEGADPMAVLRDLAEI 299
>gi|295397253|ref|ZP_06807349.1| DNA polymerase III, gamma/tau subunit DnaX [Aerococcus viridans
ATCC 11563]
gi|294974500|gb|EFG50231.1| DNA polymerase III, gamma/tau subunit DnaX [Aerococcus viridans
ATCC 11563]
Length = 631
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 103/362 (28%), Positives = 187/362 (51%), Gaps = 15/362 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+TF D+VGQ VA+ L NA+ K Y+F GP GTGKTS A+I ++A+
Sbjct: 19 YQALYRVWRPQTFGDIVGQEAVARTLQNAIRTGKTSHAYLFTGPRGTGKTSAAKILSKAI 78
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N E I D+ D + + +QY++
Sbjct: 79 NCPNQVDGEPCNECEICRAITDGTLPDVIEIDAASNNGVEEIRDIRDKVRYAPTEAQYKV 138
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISR Q+F F ++
Sbjct: 139 YIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQRFDFKRISRQS 198
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I + +I ++GIE + AL +IA ++G +RDA L+Q +S +S+ + + G
Sbjct: 199 IEDRMAFILDQDGIEFENGALAVIARAANGGMRDALSLLDQVISFSDGTLSLETSRLVTG 258
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL--------- 697
+S+E+LV+ + + + +L +M G + + + + D++
Sbjct: 259 ALSEEQLVEYTEALANGQVTAALDHLHALMAGGQDAARFVEEQLVFVRDLMIAKETKADT 318
Query: 698 AGSYDFTKDRHRRKFFRRQPLSKE-EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQ 756
A D T+ R+ F+ L+K ++ L + +K E + ++R S +L A +Q
Sbjct: 319 AEIEDLTQ-RYDEAFYS---LAKTIDVNVLYKMMKVFRETQAEIRFSLQPTIYLEVATVQ 374
Query: 757 LA 758
+A
Sbjct: 375 VA 376
>gi|374605838|ref|ZP_09678750.1| DNA polymerase iii, subunits gamma and tau [Paenibacillus
dendritiformis C454]
gi|374388560|gb|EHQ59970.1| DNA polymerase iii, subunits gamma and tau [Paenibacillus
dendritiformis C454]
Length = 572
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 171/345 (49%), Gaps = 5/345 (1%)
Query: 423 LVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCN 482
+VGQ + Q L N++ R+ Y+F GP GTGKT+ A+I A+A+NC+ P+PC C
Sbjct: 1 MVGQQHIIQTLQNSLRERRFSHAYLFSGPRGTGKTTAAKIMAKAVNCEQGPGPEPCNECE 60
Query: 483 SCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWS 542
+C G ++ E+ N E I DL D + + ++++++ D+ L+ ++++
Sbjct: 61 ACRRITAGAVMDVVEIDAASNRGVEEIRDLRDKVKYAPSEVRHKVYIIDEVHMLTTEAFN 120
Query: 543 AISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIE 602
A+ K ++ P V+FIL ++ LP IISRCQ+F F ++ + + L+ + EGIE
Sbjct: 121 ALLKTLEEPPAHVMFILATTEPHRLPATIISRCQRFDFRRVTLEEQVARLEQVCRDEGIE 180
Query: 603 IDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDEKLVDLLDLAL 661
D+D+L IA SDG +RDA L+Q S R+ V ++ G I +E+ D+
Sbjct: 181 ADRDSLTYIAKLSDGGMRDAISLLDQAASFTDGRLDYRQVLDITGGIPEEQFADIARAVQ 240
Query: 662 SADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY----DFTKDRHRRKFFRRQP 717
+ D + + + +M+ G M L D+L + DR R R+
Sbjct: 241 AGDVGSVLATVESMMQEGKSADKCMESLLYFFRDLLMMKMVPDGEGLTDRLTRVEAFREL 300
Query: 718 LSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
E L + + TL+ + ++ + T ALLQLA Q
Sbjct: 301 ADAFEAASLFRIIDTLNRYQTDMKYAVQPQTLFEVALLQLAVQNQ 345
>gi|421227013|ref|ZP_15683723.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2072047]
gi|395596424|gb|EJG56641.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2072047]
Length = 551
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLDLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|309806689|ref|ZP_07700685.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
LactinV 03V1-b]
gi|308166994|gb|EFO69177.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
LactinV 03V1-b]
Length = 587
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 199/376 (52%), Gaps = 16/376 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +++ PRTF +VGQ+ + L N++ R K+ ++F GP GTGKTSCA+IFA+A+
Sbjct: 7 YQALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI 66
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C++C++ D+G +I E+ N + I + D + + Y++
Sbjct: 67 NCMDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKV 126
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ +
Sbjct: 127 YIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQ 186
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +E I D+ +L++IA +DG +RD+ L+Q LS +I+ + G
Sbjct: 187 LVARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITG 246
Query: 647 LISDEKLVDL-LDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT-VITDILAGSYDFT 704
K+ L LDL L+ T ++ + ++ G ++ ++ V+ +LA D T
Sbjct: 247 YADQVKIEALFLDL-LNKKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTT 305
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYV 764
LS +E+LR L + + L+++ND L L Q P + +V
Sbjct: 306 VTF----------LSANYLEQLR--LISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFV 353
Query: 765 LPSSSADTSFSHSPLD 780
+ S+ D + + S D
Sbjct: 354 VRISTQDVNATVSQTD 369
>gi|312872227|ref|ZP_07732300.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
2062A-h1]
gi|311092311|gb|EFQ50682.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
2062A-h1]
Length = 587
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 199/376 (52%), Gaps = 16/376 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +++ PRTF +VGQ+ + L N++ R K+ ++F GP GTGKTSCA+IFA+A+
Sbjct: 7 YQALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI 66
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C++C++ D+G +I E+ N + I + D + + Y++
Sbjct: 67 NCMDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKV 126
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ +
Sbjct: 127 YIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQ 186
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +E I D+ +L++IA +DG +RD+ L+Q LS +I+ + G
Sbjct: 187 LVNRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITG 246
Query: 647 LISDEKLVDL-LDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT-VITDILAGSYDFT 704
K+ L LDL L+ T ++ + ++ G ++ ++ V+ +LA D T
Sbjct: 247 YADQVKIEALFLDL-LNKKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTT 305
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYV 764
LS +E+LR L + + L+++ND L L Q P + +V
Sbjct: 306 VTF----------LSANYLEQLR--LISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFV 353
Query: 765 LPSSSADTSFSHSPLD 780
+ S+ D + + S D
Sbjct: 354 VRISTQDINATVSQTD 369
>gi|313890779|ref|ZP_07824404.1| DNA polymerase III, subunit gamma and tau [Streptococcus
pseudoporcinus SPIN 20026]
gi|416851546|ref|ZP_11908691.1| DNA polymerase III, subunit gamma and tau [Streptococcus
pseudoporcinus LQ 940-04]
gi|313120880|gb|EFR43994.1| DNA polymerase III, subunit gamma and tau [Streptococcus
pseudoporcinus SPIN 20026]
gi|356739035|gb|EHI64267.1| DNA polymerase III, subunit gamma and tau [Streptococcus
pseudoporcinus LQ 940-04]
Length = 560
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 164/307 (53%), Gaps = 7/307 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +V+ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFAEMVGQKVVSTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPNQVDGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSSGAFNALLKTLEEPSQNVVFILATTELHKIPATILSRVQRFEFKSIKQND 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQ-RISVPLVQELV 645
I L WI E I + AL LIA R++G +RDA L+Q LSL + ++ + + +E+
Sbjct: 182 ISSHLAWILETEEIPYQEAALDLIARRAEGGMRDALSILDQALSLSSENQVDLAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALS-ADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL---AGSY 701
G IS L D L LS D + +L I + G + L T + D+L G
Sbjct: 242 GSISLAAL-DTYVLNLSHHDAQAALSDLATIFDNGKSMSRFATDLLTYLRDLLVVKVGGQ 300
Query: 702 DFTKDRH 708
+++ +H
Sbjct: 301 SYSQSKH 307
>gi|255014495|ref|ZP_05286621.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_7]
gi|410103106|ref|ZP_11298031.1| DNA polymerase III, subunit gamma and tau [Parabacteroides sp. D25]
gi|423330535|ref|ZP_17308319.1| DNA polymerase III, subunit gamma and tau [Parabacteroides
distasonis CL03T12C09]
gi|409232151|gb|EKN24999.1| DNA polymerase III, subunit gamma and tau [Parabacteroides
distasonis CL03T12C09]
gi|409238233|gb|EKN31028.1| DNA polymerase III, subunit gamma and tau [Parabacteroides sp. D25]
Length = 586
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 155/288 (53%), Gaps = 2/288 (0%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC-QS 471
+KY P TFR +VGQ + L NA+ K+ Y+F GP G GKTSCARIFA+ +NC
Sbjct: 9 RKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINCLNP 68
Query: 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
+ C C SC + + +S NI E+ N + I L+D + P +Y++F+ D
Sbjct: 69 TADGEACNACESCRAFNEQRSYNIHELDAASNNSVDDIRTLIDQVRIPPPIGKYKVFIID 128
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+ L+ +++A K ++ P +FIL ++ + I+SRCQ + F ++ AD++
Sbjct: 129 EVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYDFSRISIADMVEH 188
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISD 650
LQ+++S+EG+ + +AL +IA ++DG +RDA +Q +S I+ V + + ++
Sbjct: 189 LQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFTNGNITYQAVIDNLNVLDY 248
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA 698
E L D LS + ++ L I+ G + +++ LA D+L
Sbjct: 249 EYYFRLTDAILSGNVRASLLILNEILGKGFDGQNIITGLAGHFRDLLV 296
>gi|346224676|ref|ZP_08845818.1| DNA polymerase III subunits gamma and tau [Anaerophaga
thermohalophila DSM 12881]
Length = 367
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 192/357 (53%), Gaps = 16/357 (4%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P TF +VGQ + L NA+ +++ Y+F GP G GKT+CARIFA+ +NC+++
Sbjct: 8 RKYRPDTFDSVVGQKNITTTLKNAIKNQQLAHAYLFCGPRGVGKTTCARIFAKTINCKNI 67
Query: 473 EQP-KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ---YRIF 528
+ C C+SC + + S NI E+ N E I L+D + R P Q Y ++
Sbjct: 68 TSDFEACNECDSCRAFNENGSYNIHELDAASNNSVEDIRSLIDKV---RIPPQMGNYSVY 124
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ LS +++A K ++ PR +FIL ++ + I+SRCQ F F ++K D
Sbjct: 125 IIDEVHMLSQQAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQTFDFKRIKVEDA 184
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVGL 647
+ L+ +A EG+ ++++ L +IA ++DG++RDA +Q+ + G+ +S V + + +
Sbjct: 185 VEHLKKVARLEGVVVEEEGLNVIAQKADGAMRDALSIFDQIVAFSGKNVSYQQVIDNLNV 244
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT--- 704
+ + L+D L+ DT +++ L I++ G E ++ L + + D+L + T
Sbjct: 245 LDYDYYFKLMDAFLNEDTKSSLLILDEILDNGFEEGHFVAGLCSHLRDLLMCKDEATLGL 304
Query: 705 ---KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R K+ + K +++ L +AL+ ++ + Q R + +K AL++L+
Sbjct: 305 LEVGASIREKYLEQA--RKCQVDFLVKALEIATQCDLQFRSARNKRLHTEFALIKLS 359
>gi|329920997|ref|ZP_08277525.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN
1401G]
gi|328935273|gb|EGG31753.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN
1401G]
Length = 583
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 199/376 (52%), Gaps = 16/376 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +++ PRTF +VGQ+ + L N++ R K+ ++F GP GTGKTSCA+IFA+A+
Sbjct: 3 YQALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C++C++ D+G +I E+ N + I + D + + Y++
Sbjct: 63 NCMDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ +
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +E I D+ +L++IA +DG +RD+ L+Q LS +I+ + G
Sbjct: 183 LVARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITG 242
Query: 647 LISDEKLVDL-LDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT-VITDILAGSYDFT 704
K+ L LDL L+ T ++ + ++ G ++ ++ V+ +LA D T
Sbjct: 243 YADQVKIEALFLDL-LNKKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTT 301
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYV 764
LS +E+LR L + + L+++ND L L Q P + +V
Sbjct: 302 VTF----------LSANYLEQLR--LISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFV 349
Query: 765 LPSSSADTSFSHSPLD 780
+ S+ D + + S D
Sbjct: 350 VRISTQDINATVSQTD 365
>gi|386317336|ref|YP_006013500.1| DNA polymerase III subunits gamma and tau [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
gi|417751671|ref|ZP_12399946.1| DNA polymerase III, subunit gamma and tau [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|323127623|gb|ADX24920.1| DNA polymerase III subunits gamma and tau [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
gi|333772547|gb|EGL49385.1| DNA polymerase III, subunit gamma and tau [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
Length = 559
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 186/365 (50%), Gaps = 11/365 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I D+ D + + Y++
Sbjct: 62 NCPNQVNGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQRA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L I KEG+ + DAL LIA R++G +RDA L+Q LSL ++++ + +E+
Sbjct: 182 IREHLASILDKEGLTYEVDALNLIARRAEGGMRDALSILDQALSLSPDDQVTMAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL---AGSYD 702
G IS L D + + ++ L I ++G + L T + D+L AG
Sbjct: 242 GSISMVALDDYVQHLMENQATQALQALETIYDSGKSMSRFATDLLTYLRDLLVVKAGG-- 299
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
D R+ LS ME++ Q + ++ +++ + +QLA ++
Sbjct: 300 ---DNQRQSALFDTNLSL-PMERIFQMIAVVTNHLPEIKKGIHPRIYAEMMTIQLAKEEG 355
Query: 763 YVLPS 767
LPS
Sbjct: 356 VALPS 360
>gi|366163519|ref|ZP_09463274.1| DNA polymerase III subunits gamma and tau [Acetivibrio
cellulolyticus CD2]
Length = 555
Score = 166 bits (420), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 142/536 (26%), Positives = 255/536 (47%), Gaps = 53/536 (9%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P F D+V Q V + L N++ ++ Y+F G GTGKT+ A+IF+RA+NC+
Sbjct: 6 LYRKWRPMVFEDVVEQEHVVKTLKNSISVGRIAHAYLFCGTRGTGKTTMAKIFSRAINCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ PC C C G ++ E+ N +++ ++ D +V + ++Y++++
Sbjct: 66 NSTNGDPCNECEICKGILNGSLLDVIEIDAASNNSVDNVREIRDEVVYAPSKARYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS +++A+ K ++ P VVFIL ++ LP I+SRCQ+F F ++ I+
Sbjct: 126 DEVHMLSSGAFNALLKTLEEPPGHVVFILATTEPHKLPATILSRCQRFDFRRIPVESIVK 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLIS 649
++ IA + I+ + LKLIA SDG+LRDA L+Q +SL + ++ V +VG+++
Sbjct: 186 RIEHIAKSSEVSIENEGLKLIARMSDGALRDAISILDQCISLGNKHLTYDDVLSVVGIVN 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS--------Y 701
+ + D++D S + + + V++ G +S L ++L S
Sbjct: 246 NTFIADMVDAINSKEVEKVLYLINVLVMDGKNITQFVSDLVLYYRNLLICSTSRNPEEII 305
Query: 702 DFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQ 761
+ +K+ +R + Q LS E + A+K LS E ++ S L AL++L +
Sbjct: 306 EASKEMIQRMKAQSQGLSNIE---ITSAIKELSTLEATMKWSTHARVLLEVALIKLCENS 362
Query: 762 QYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSG 821
+S D S H +D M G ++S+ E+ S
Sbjct: 363 -----VNSGDASM-HERIDFLEKKINDMLANG---VKVSSGES--------------RSY 399
Query: 822 DFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGG-----RHVSGNSRNGIEEIWLEVLN 876
D +DG DR +G + S ++A ++++GN + G+ +IW +VLN
Sbjct: 400 D-VDGKKN-----DRPNEPNTG---NKSSNMAASDSKIDLKNLAGNLK-GL-DIWADVLN 448
Query: 877 RIQNNG-TKEFLY-REGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQILQAFES 930
++ NG F Y + K I + V RSH + ++ +IL+ + S
Sbjct: 449 DLKQNGRMALFSYLLDTKAIEIDSRIVGIVFPPERSHFKINVSKSENAEILENYTS 504
>gi|257885058|ref|ZP_05664711.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501]
gi|430853569|ref|ZP_19471297.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1258]
gi|257820910|gb|EEV48044.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501]
gi|430540650|gb|ELA80852.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1258]
Length = 581
Score = 166 bits (420), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 191/378 (50%), Gaps = 18/378 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ V Q L NA++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C S G ++ E+ N E I + D + + Y++
Sbjct: 63 NCPNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ V+FIL ++ +P IISR Q+F F ++ AD
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTAD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L++I + I + AL +IA ++G +RDA L+Q +S I++ ++ G
Sbjct: 183 IVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++DE + L + + ++ L I+ G E + + D+L A +
Sbjct: 243 SLTDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQYCRDLLMYQQAPNLV 302
Query: 703 FTKDRHRRKFFRR--QPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760
+ R F Q +S +++ + +K LS+ + ++R +N +L A ++LA
Sbjct: 303 EEQSSTIRSTFTELAQTVSADQLFSM---IKILSDTQNEIRFTNSAAIYLEVATVKLAQ- 358
Query: 761 QQYVLPSS---SADTSFS 775
LPS+ SAD SF+
Sbjct: 359 ----LPSASVPSADVSFA 372
>gi|170760406|ref|YP_001785357.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A3
str. Loch Maree]
gi|169407395|gb|ACA55806.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A3
str. Loch Maree]
Length = 541
Score = 166 bits (420), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 192/356 (53%), Gaps = 10/356 (2%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ PRTF+++VGQ + L N V+ +++ Y+F G GTGKTS A+I ++A+NC
Sbjct: 6 LYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNCL 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ--YRIF 528
+ + +PC C C + G ++ E+ E I ++++N+ PP + +++
Sbjct: 66 NPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENV--KYPPQEGKNKVY 123
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ L+ ++ +A K ++ P V+FIL ++ LP I+SRCQ+F F ++++ +I
Sbjct: 124 IMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIRNEEI 183
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGL 647
L+ I S++GI D +L LIA SDG++RDA L+Q+ G ++ V +++GL
Sbjct: 184 FERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDMLGL 243
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR 707
+++E L+ + + + D +++ + I+ +G + + + T + +IL +
Sbjct: 244 VTNENLLRITNSIIEKDVEKSMRIIEDIVLSGKDIYNFIKDMITHLRNILMVKVSKNPNE 303
Query: 708 HRRKFFRRQPLSKEEMEKLR-----QALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
L KE+ EK+R + +K L EAE+Q + +L A+L++
Sbjct: 304 ILDMSSENIDLVKEQSEKIRIEEIMRNIKILQEAEQQSKWVKQNRIYLELAVLKMC 359
>gi|288904969|ref|YP_003430191.1| DNA polymerase III subunits gamma and tau [Streptococcus
gallolyticus UCN34]
gi|386337418|ref|YP_006033587.1| DNA polymerase III subunit gamma/tau [Streptococcus gallolyticus
subsp. gallolyticus ATCC 43143]
gi|288731695|emb|CBI13256.1| DNA polymerase III, gamma and tau subunits [Streptococcus
gallolyticus UCN34]
gi|334280054|dbj|BAK27628.1| DNA polymerase III subunit gamma/tau [Streptococcus gallolyticus
subsp. gallolyticus ATCC 43143]
Length = 559
Score = 166 bits (420), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 157/292 (53%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +V+ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQTVVSTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPNQVNGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K A
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPTTILSRVQRFEFKAIKLAA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L I KE I ++DAL LIA ++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IREHLANILDKEEISYEEDALTLIARCAEGGMRDALSILDQALSLTPDNHVSLAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + L+ T + NL I ++G + L + D+L
Sbjct: 242 GSISMTALDDFVANVLANQTSQALANLETIFDSGKSMNRFATDLLNYLRDLL 293
>gi|385809646|ref|YP_005846042.1| DNA polymerase III subunit gamma/tau [Ignavibacterium album JCM
16511]
gi|383801694|gb|AFH48774.1| DNA polymerase III subunit gamma/tau [Ignavibacterium album JCM
16511]
Length = 553
Score = 166 bits (420), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 188/348 (54%), Gaps = 13/348 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q +K+ P+ F ++VGQ + + L N++ + ++ Y+F GP G GKT+ ARI A+AL
Sbjct: 3 YQVTARKWRPQKFEEVVGQEHITETLKNSLRKNRIAHAYIFTGPRGVGKTTTARILAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC +PC C+ C + + +S +I E+ N + + L +++ + +Y++
Sbjct: 63 NCLQPVDFEPCNKCDMCRAINEMQSMDIIEIDAATNRGIDEVRTLRESVKYAPTLGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ +S++A K ++ P +F+ ++ + +P IISRCQ+F F +++
Sbjct: 123 YIIDEVHMLTTESFNAFLKTLEEPPAHTIFVFATTDIHKVPPTIISRCQRFDFRRLQIET 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I + L+ IA +E I+ID AL +IA ++DG +RDA+ +Q ++ G+ + V +++
Sbjct: 183 IKHQLKKIADEEKIKIDDKALTIIAKKADGGMRDAQSYFDQVIAFCGENVDSETVSKILN 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPL----ALMSQLATVITDILAGSYD 702
LI +E ++ D +S + I + G + L+ ++T +L D
Sbjct: 243 LIDEETYFNISDAIISKSFQTVFDTINTIYQNGWDFTDFLDGLIEHFRNILTVVLTNKTD 302
Query: 703 FTK--DRHRRKFFRRQPLSKEEMEK--LRQALKTLSEAEKQLRMSNDK 746
+ + ++ K+ + + +E K L + L L++++++LR SN++
Sbjct: 303 QIECAEIYKPKYLQ----TSKEFSKGDLLRILNFLAKSQQELRFSNNR 346
>gi|334338701|ref|YP_004543681.1| DNA polymerase III subunits gamma and tau [Desulfotomaculum ruminis
DSM 2154]
gi|334090055|gb|AEG58395.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum
ruminis DSM 2154]
Length = 547
Score = 166 bits (420), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 191/352 (54%), Gaps = 12/352 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L + + P+TF +LVGQ + + L NA++ KV Y+F GP GTGKT+ A++ A+AL
Sbjct: 3 YKALYRTWRPQTFHELVGQQHITRTLQNALVNGKVAHAYLFCGPRGTGKTTTAKVLAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C++C + + G S ++ E+ N + I DL + + + + ++
Sbjct: 63 NCLNNDLGEPCNECDNCRAVNEGTSVDVIEIDAASNRGIDEIRDLREKVKFAPATGRRKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ +++A+ K ++ P VVF+L ++ +P I+SRCQ+F F ++K +
Sbjct: 123 YIIDEVHMLTDQAFNALLKTLEEPPAHVVFVLATTEAHKVPVTILSRCQRFDFRRIKTQE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ L+ +A+ GIE++++AL+LIA ++G LRDA L+Q + +++S + ++G
Sbjct: 183 MLGRLKEVAAGAGIEVEEEALRLIAEAAEGGLRDALSILDQGAAFAEEKVSAADIHSILG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+ E L ++ ++ L I + G + +L + + +L D
Sbjct: 243 TVQQEVLARMVRHLAEGKASLALELLAEINDRGKDLRLFARELTSHLRGLLLEGLD---- 298
Query: 707 RHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
++ P + + L L+ L +AE++++ S+ + L AL++ A
Sbjct: 299 -------QKSPAGSLQEQTLFHLLQVLVQAEQEMKWSSQPVLVLELALVKAA 343
>gi|150008698|ref|YP_001303441.1| DNA polymerase III subunit gamma/tau [Parabacteroides distasonis
ATCC 8503]
gi|149937122|gb|ABR43819.1| DNA polymerase III subunit gamma/tau [Parabacteroides distasonis
ATCC 8503]
Length = 586
Score = 166 bits (420), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 155/288 (53%), Gaps = 2/288 (0%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC-QS 471
+KY P TFR +VGQ + L NA+ K+ Y+F GP G GKTSCARIFA+ +NC
Sbjct: 9 RKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINCLNP 68
Query: 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
+ C C SC + + +S NI E+ N + I L+D + P +Y++F+ D
Sbjct: 69 TADGEACNACESCRAFNEQRSYNIHELDAASNNSVDDIRTLIDQVRIPPPIGKYKVFIID 128
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+ L+ +++A K ++ P +FIL ++ + I+SRCQ + F ++ AD++
Sbjct: 129 EVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYDFSRISIADMVEH 188
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISD 650
LQ+++S+EG+ + +AL +IA ++DG +RDA +Q +S I+ V + + ++
Sbjct: 189 LQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFTNGNITYQAVIDNLNVLDY 248
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA 698
E L D LS + ++ L I+ G + +++ LA D+L
Sbjct: 249 EYYFRLTDAILSGNVRASLLILNEILGKGFDGQNIITGLAGHFRDLLV 296
>gi|340357125|ref|ZP_08679752.1| DNA polymerase III, gamma/tau subunit DnaX [Sporosarcina
newyorkensis 2681]
gi|339618632|gb|EGQ23225.1| DNA polymerase III, gamma/tau subunit DnaX [Sporosarcina
newyorkensis 2681]
Length = 593
Score = 166 bits (420), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 107/386 (27%), Positives = 192/386 (49%), Gaps = 14/386 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + Y P+TF ++ GQ + Q L N ++ +K Y+F GP GTGKTS A+IFA+AL
Sbjct: 13 YQALYRAYRPQTFGEMSGQQAIKQTLQNTLLHQKTTHAYLFSGPRGTGKTSAAKIFAKAL 72
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ +PC C +C S G + ++ E N E I D+++ + + +++++
Sbjct: 73 NCENGPATEPCNECETCRSITEGSNTDVTEFDAASNSRVEEIRDIIERVHVAPSNARFKV 132
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ LP IISRCQ+F F + +
Sbjct: 133 YIIDEVHMLSNSAFNALLKTLEEPPAHVVFILATTEPHKLPLTIISRCQRFDFKPITAGE 192
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ ++ + G++ + A++ IA + G +RDA L+Q +S G ++ + G
Sbjct: 193 IMQRMRKVLDDIGVKAEDGAMRAIAQAATGGMRDALSMLDQAVSFSGDELTTEDALLVTG 252
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDI--------LA 698
I +E L + D + + L ++ G + L + T DI L
Sbjct: 253 AIGEEIFYQLAQAIQAKDAGSALTLLHQLIAEGKDVGRLAEDMITFFRDILLLGTAPELT 312
Query: 699 GSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ D + K + S + L + + LS+ ++++R SN ++ +ALL++
Sbjct: 313 DLLELISDGEKFKELAQGFHS----DDLYRYIDILSKTQQEMRFSNHGKVYIESALLKMI 368
Query: 759 -PDQQYVLPSSSADTSFSHSPLDLEN 783
Q V SS+AD + LE
Sbjct: 369 HSGDQRVASSSAADPEMAQKLAVLEQ 394
>gi|336065256|ref|YP_004560114.1| DNA polymerase III subunits gamma and tau [Erysipelothrix
rhusiopathiae str. Fujisawa]
gi|334295202|dbj|BAK31073.1| DNA polymerase III, gamma and tau subunits [Erysipelothrix
rhusiopathiae str. Fujisawa]
Length = 600
Score = 166 bits (419), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 111/395 (28%), Positives = 202/395 (51%), Gaps = 19/395 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q+L +KY P ++VGQ V L N++ + K+ Y+F GP GTGKTS A++FARA+
Sbjct: 3 YQSLYRKYRPAHLDEVVGQEHVVNVLKNSITKNKISHAYLFCGPRGTGKTSIAKLFARAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ +Q CG C++C++ G ++ E+ N + I L++ + + +Y++
Sbjct: 63 NCENPDQV-ICGTCDNCLAVADGTHPDLIEIDAASNNGVDEIRGLIEKVKYTPILGKYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ + + IISRCQ++ F ++ + D
Sbjct: 122 YIIDEVHMLSQGAFNALLKTLEEPPSHVVFILATTEIHKVLPTIISRCQRYDFNRIGEVD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646
I L ++ + E +E ++ KLIAS S G LR+A LEQ +L +I+V + + G
Sbjct: 182 IAKRLDYVLNNENVEAEQGVSKLIASLSGGGLRNALTILEQAIVLADDQITVNQIYDTNG 241
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY---DF 703
+I+D+ ++L D V + ++ E V LM L + D + S+ D
Sbjct: 242 IITDQDKINLFDSIREQQMEALVNQIAMMNEKSVNIDRLMMDLVGGLKDSIIYSHTKSDS 301
Query: 704 TKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQY 763
+ + F + + E+L+ K LS +K ++ S ++ + A++ +
Sbjct: 302 LVNENSLMFIHYLAETLQVHERLKVIEKLLSYTDK-MKFSQNQSIYFEVAMVDVF----- 355
Query: 764 VLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAE 798
SFS+ ++L MT + RAE
Sbjct: 356 --------NSFSNKNVNLNQQTELTMTAEQIYRAE 382
>gi|309810107|ref|ZP_07703953.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN
2503V10-D]
gi|308169606|gb|EFO71653.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN
2503V10-D]
Length = 583
Score = 166 bits (419), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 199/376 (52%), Gaps = 16/376 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +++ PRTF +VGQ+ + L N++ R K+ ++F GP GTGKTSCA+IFA+A+
Sbjct: 3 YQALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C++C++ D+G +I E+ N + I + D + + Y++
Sbjct: 63 NCMDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ +
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +E I D+ +L++IA +DG +RD+ L+Q LS +I+ + G
Sbjct: 183 LVNRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYKDTLAITG 242
Query: 647 LISDEKLVDL-LDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT-VITDILAGSYDFT 704
K+ L LDL L+ T ++ + ++ G ++ ++ V+ +LA D T
Sbjct: 243 YADQVKIEALFLDL-LNRKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTT 301
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYV 764
LS +E+LR L + + L+++ND L L Q P + +V
Sbjct: 302 ----------VTFLSANYLEQLR--LISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFV 349
Query: 765 LPSSSADTSFSHSPLD 780
+ S+ D + + S D
Sbjct: 350 VRISTQDVNATVSQTD 365
>gi|306831039|ref|ZP_07464201.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|304427062|gb|EFM30172.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
Length = 559
Score = 166 bits (419), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 159/292 (54%), Gaps = 6/292 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQTVISTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPNQVNGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K A
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKLAA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L I KE I ++DAL LIA ++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IREHLANILDKEEISYEEDALTLIARCAEGGMRDALSILDQALSLTPDNYVSLAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + L+ T + NL I ++G MS+ AT + + L
Sbjct: 242 GSISMTALDDFVANVLANQTSQALANLETIFDSGKS----MSRFATDLLNYL 289
>gi|423341452|ref|ZP_17319167.1| DNA polymerase III, subunit gamma and tau [Parabacteroides
johnsonii CL02T12C29]
gi|409220340|gb|EKN13295.1| DNA polymerase III, subunit gamma and tau [Parabacteroides
johnsonii CL02T12C29]
Length = 606
Score = 166 bits (419), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 155/288 (53%), Gaps = 2/288 (0%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC-QS 471
+KY P TFR +VGQ + L NA+ K+ Y+F GP G GKTSCARIFA+ +NC
Sbjct: 9 RKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINCLNP 68
Query: 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
+ C C SC + + +S NI E+ N + I L+D + P +Y++F+ D
Sbjct: 69 TADGEACNECESCKAFNEQRSYNIHELDAASNNSVDDIRALIDQVRIPPPIGKYKVFIID 128
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+ LS +++A K ++ P +FIL ++ + I+SRCQ + F ++ AD++
Sbjct: 129 EVHMLSSAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYDFSRISIADMVEH 188
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISD 650
L++++S EG+ + +AL +IA ++DG +RDA +Q +S I+ V + + ++
Sbjct: 189 LEYVSSCEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFTNGNITYQAVIDNLNVLDY 248
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA 698
E L D LS + + + L I+ G + +++ LA+ D+L
Sbjct: 249 EYYFRLTDAMLSGNVRSAILILNDILSKGFDGQNIITGLASHFRDLLV 296
>gi|302190914|ref|ZP_07267168.1| DNA polymerase III, gamma/tau subunit [Lactobacillus iners AB-1]
Length = 583
Score = 166 bits (419), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 197/376 (52%), Gaps = 16/376 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +++ PRTF +VGQ+ + L N++ R K+ ++F GP GTGKTSCA+IFA+A+
Sbjct: 3 YQALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C++C++ D+G +I E+ N + I + D + + Y++
Sbjct: 63 NCMDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ +
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +E I D+ +L++IA +DG +RD+ L+Q LS +I+ + G
Sbjct: 183 LVARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITG 242
Query: 647 LISDEKLVDL-LDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT-VITDILAGSYDFT 704
K+ L LDL L+ T ++ + ++ G ++ ++ V+ +LA D T
Sbjct: 243 YADQVKIEALFLDL-LNKKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTT 301
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYV 764
+ + L ++ L Q L+ +EA LR +N Q P + +V
Sbjct: 302 VTFLSANYLEQLRLISTQV--LSQTLQLANEALNSLRYTNQ----------QQIPLKVFV 349
Query: 765 LPSSSADTSFSHSPLD 780
+ S+ D + + S D
Sbjct: 350 VRISTQDVNATVSQTD 365
>gi|390454273|ref|ZP_10239801.1| DNA polymerase III subunit gamma/tau [Paenibacillus peoriae KCTC
3763]
Length = 584
Score = 166 bits (419), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 179/358 (50%), Gaps = 11/358 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H L + + P+ F+D+VGQ + Q L NA+ + Y+F GP GTGKTS A+I A+A+
Sbjct: 3 HIALYRAWRPQAFKDMVGQQHIIQTLQNAIRENRTSHAYLFSGPRGTGKTSAAKILAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ P+PC C +C G +++E+ N E I DL D + + ++++
Sbjct: 63 NCEHGPAPEPCNECEACKRITAGAVMDVQEIDAASNRGVEEIRDLRDKVKYAPTEVRHKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+FIL ++ +P IISRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHRIPATIISRCQRFDFRRVSLEE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVG 646
L I +E I+ D DAL+ IA SDG +RDA L+Q+ S ++ V ++ G
Sbjct: 183 QTERLDLICRQENIQADADALQYIARLSDGGMRDAVSVLDQISSFTDGPVTYQQVLDMTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-----AGSY 701
I+ E+ L L D ++ + M+ G M L D+L +
Sbjct: 243 GIASEQFGKLALALLKEDVGMVLQMIENFMQEGKSADKCMENLLYYFRDLLMIKMVPQAT 302
Query: 702 DFTKDRHRRKFFRR--QPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
T+ + FR +KE++ + + TL+ + +++ + T ALL+L
Sbjct: 303 KMTERVLDSEQFREVADAFTKEQLFAM---IDTLNRYQSEMKYAVQPQTLFEVALLKL 357
>gi|428304074|ref|YP_007140899.1| DNA polymerase III subunits gamma and tau [Crinalium epipsammum PCC
9333]
gi|428245609|gb|AFZ11389.1| DNA polymerase III, subunits gamma and tau [Crinalium epipsammum
PCC 9333]
Length = 465
Score = 166 bits (419), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 114/361 (31%), Positives = 193/361 (53%), Gaps = 8/361 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H LT KY P+ DLVGQ+ ++Q L+NA+ ++ Y+F GP GTGKTS ARI A++L
Sbjct: 2 HTPLTLKYRPQLLADLVGQDCLSQTLTNAIKSGRIAPAYLFTGPKGTGKTSTARILAKSL 61
Query: 468 NC--QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
NC SL PCG C SC S ++ S ++ E+ + + L++ + Y
Sbjct: 62 NCSNNSLPTVTPCGKCQSCRSIEKSSSLDVSEIDAASHNGVDDARALIERSHLAPVGHGY 121
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
RIF+ D+ LS +++A+ K ++ P +V+FIL ++ + I+SRCQ F +
Sbjct: 122 RIFILDEVHCLSSQAFNALLKCLEEPPAKVIFILCTTEAHKILPTIVSRCQVLNFKAVSI 181
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
A++I L +A E I I++ AL +A +DG +RDA L+QLSLL I+ + E+
Sbjct: 182 ANLIKQLTNVAELEEIAINEAALTALARTADGGMRDALQLLDQLSLLEVEITPEHIAEIS 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G ++ L+ +L S +T + ++ ++++G+ P A++ L V D+LA + D T
Sbjct: 242 GDVNPSDLIAILKAIRSKNTASLLQLSSKLLDSGISPKAILVSLLKVYRDLLAIASDPTS 301
Query: 706 DRHRRKFFRRQPLSKEEM------EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759
+ ++ ++ +++ +L+ L EAE QL+ + W+ LL L P
Sbjct: 302 KNNDLLISTVSAVTIRKVAESLGYNQIQSSLQQLREAEYQLKQALQPALWVEVCLLGLIP 361
Query: 760 D 760
+
Sbjct: 362 E 362
>gi|325912930|ref|ZP_08175304.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII
60-B]
gi|325477744|gb|EGC80882.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII
60-B]
Length = 583
Score = 166 bits (419), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 199/376 (52%), Gaps = 16/376 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +++ PRTF +VGQ+ + L N++ R K+ ++F GP GTGKTSCA+IFA+A+
Sbjct: 3 YQALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C++C++ D+G +I E+ N + I + D + + Y++
Sbjct: 63 NCMDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ +
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +E I D+ +L++IA +DG +RD+ L+Q LS +I+ + G
Sbjct: 183 LVARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITG 242
Query: 647 LISDEKLVDL-LDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT-VITDILAGSYDFT 704
K+ L LDL L+ T ++ + ++ G ++ ++ V+ +LA D T
Sbjct: 243 YADQVKIEALFLDL-LNKKTSQALEEVEELLNNGASVKNILDEIINLVVKAMLAIKGDTT 301
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYV 764
LS +E+LR L + + L+++ND L L Q P + +V
Sbjct: 302 VTF----------LSANYLEQLR--LISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFV 349
Query: 765 LPSSSADTSFSHSPLD 780
+ S+ D + + S D
Sbjct: 350 VRISTQDVNATVSQTD 365
>gi|418678454|ref|ZP_13239728.1| DNA polymerase III, subunit gamma and tau [Leptospira kirschneri
serovar Grippotyphosa str. RM52]
gi|418740747|ref|ZP_13297124.1| DNA polymerase III, subunit gamma and tau [Leptospira kirschneri
serovar Valbuzzi str. 200702274]
gi|421091357|ref|ZP_15552130.1| DNA polymerase III, subunit gamma and tau [Leptospira kirschneri
str. 200802841]
gi|421129693|ref|ZP_15589893.1| DNA polymerase III, subunit gamma and tau [Leptospira kirschneri
str. 2008720114]
gi|400321644|gb|EJO69504.1| DNA polymerase III, subunit gamma and tau [Leptospira kirschneri
serovar Grippotyphosa str. RM52]
gi|409999901|gb|EKO50584.1| DNA polymerase III, subunit gamma and tau [Leptospira kirschneri
str. 200802841]
gi|410359068|gb|EKP06177.1| DNA polymerase III, subunit gamma and tau [Leptospira kirschneri
str. 2008720114]
gi|410752124|gb|EKR09100.1| DNA polymerase III, subunit gamma and tau [Leptospira kirschneri
serovar Valbuzzi str. 200702274]
Length = 480
Score = 166 bits (419), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 152/271 (56%), Gaps = 3/271 (1%)
Query: 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFAR 465
G H+ L++KY P+ F+D++ Q+L AL NA+ K+G Y+F+GP G GKT+ ARI A+
Sbjct: 3 GTHEVLSRKYRPQKFQDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAK 62
Query: 466 ALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
LNCQ+ +PC CNSC RG S ++ E+ N E+I +L DN+ + +Y
Sbjct: 63 RLNCQNPTDNEPCNECNSCKEITRGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ L+ S++A+ K ++ P +VF+L ++ +P I+SRCQ F F K+
Sbjct: 123 KVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFVLATTEFHKIPETILSRCQDFIFKKVPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQEL 644
+ + + + E ++ D++ L IA + DGS+RD +EQ + R+ ++++
Sbjct: 183 SVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIIFTDSRLLGAAIRKM 242
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVI 675
+G E L + + D N K+L +I
Sbjct: 243 IGYHGIEFLTSFIKSLVDPD--NHSKSLEII 271
>gi|406986464|gb|EKE07052.1| hypothetical protein ACD_18C00204G0001 [uncultured bacterium]
Length = 551
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 135/228 (59%), Gaps = 3/228 (1%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L KY P+TF D++ Q + Q LSN + K+ Y+F GP G GKT+ ARI A++LNC
Sbjct: 3 LYHKYRPQTFADIIEQTHIVQTLSNQIKTEKMSHAYLFSGPRGVGKTTTARILAKSLNCT 62
Query: 471 SLE--QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESI-LDLLDNMVTSRPPSQYRI 527
+ +PC C SC G S ++ E+ + +++ ++++N S+Y+I
Sbjct: 63 QRQAGSSEPCNTCQSCQEITSGYSIDVIEIDAASHTGVDNVRQNIIENSQFKPTTSKYKI 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
F+ D+ LS +++A+ K ++ P V+FIL ++ LP IISRCQ++ F K+ D +
Sbjct: 123 FIIDEVHMLSTAAFNALLKTLEEPPAYVIFILATTDPQKLPATIISRCQRYTFTKVPDKE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR 635
+I T++ +A E EI+++ LK IA +S+G +RDA LEQL+ G++
Sbjct: 183 MIQTIKKMAKSEDFEIEEEVLKRIAKKSEGCVRDAISLLEQLTATGEK 230
>gi|385800902|ref|YP_005837306.1| DNA polymerase III subunits gamma and tau [Halanaerobium praevalens
DSM 2228]
gi|309390266|gb|ADO78146.1| DNA polymerase III, subunits gamma and tau [Halanaerobium
praevalens DSM 2228]
Length = 661
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/328 (30%), Positives = 174/328 (53%), Gaps = 40/328 (12%)
Query: 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC 469
+L +KY P F DL+GQ+ V Q L NA+ +V Y+F GP GTGKTS A++FA++LNC
Sbjct: 5 SLYRKYRPENFNDLIGQDQVKQTLKNALKNDRVAHAYLFAGPRGTGKTSAAKVFAKSLNC 64
Query: 470 QS-LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
+ +PCG CNSC ++G S ++ E+ N + I +L + + +Y+++
Sbjct: 65 ANPTADFEPCGECNSCQRIEKGNSLDVIEIDAASNRGIDEIRELREKVKFYPGEGKYKVY 124
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ L+ +++A+ K ++ P VVFIL ++ + IISRCQ+F F + ++
Sbjct: 125 IIDEVHMLTKGAFNALLKTLEEPPDSVVFILATTEPHKVITTIISRCQRFDFSLLTLTNL 184
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA-------------EMTLEQLSLLGQR 635
L +IA EG EI+K+AL ++A + G +RDA ++ EQ++++ R
Sbjct: 185 KKRLAYIAQAEGYEIEKEALDILARSARGGMRDAISLLDQAISFSDGQLNAEQIAMMLGR 244
Query: 636 ISVPLVQELVGLISD---EKLVDLLDLAL---------SADTVNTVKNLRVIMETGVEPL 683
I ++E + +S +K ++LL+ L S + + + L +I E G+E
Sbjct: 245 IDKADLKEFLIYLSQKEGQKALELLNKQLESGLGIERFSDELIEYCRELLLIKECGIESG 304
Query: 684 AL------MSQLATV--------ITDIL 697
L + ++A+V ITDI+
Sbjct: 305 ILEYSRSYLEEIASVAANFSTTKITDII 332
>gi|284049060|ref|YP_003399399.1| DNA polymerase III subunits gamma and tau [Acidaminococcus
fermentans DSM 20731]
gi|283953281|gb|ADB48084.1| DNA polymerase III, subunits gamma and tau [Acidaminococcus
fermentans DSM 20731]
Length = 671
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 164/303 (54%), Gaps = 4/303 (1%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L + + P+ F DLVGQ + +AL+NA+ ++ Y+F GP GTGKTS ARI A+ALNC+
Sbjct: 6 LYRTWRPQDFDDLVGQAPIKKALTNALETGRISHAYLFAGPRGTGKTSTARILAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
PC C++C G ++ E+ N + I L + + + +Y++++
Sbjct: 66 KGPTAHPCNQCSNCREITEGTCGDVVEIDAASNRGIDEIRKLREQVYFAPTSCRYKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ ++ D+++A+ K ++ P VVFIL ++ + + I+SRCQ+F F + +I
Sbjct: 126 DEVHMITTDAFNALLKTLEEPPEHVVFILATTEPQKILNTILSRCQRFDFRRATVDEIAE 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
L+ +A I+ + +AL+L+A ++DG LRDA L+Q S++ ++ V++++GL+
Sbjct: 186 HLEKVAKGSHIQAEPEALRLMAIQADGGLRDALSLLDQCSVMASPVTAETVRQVLGLVGR 245
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRR 710
EKL +L+ + + L ++E G E M Q+ + + + DR +
Sbjct: 246 EKLRELVTRIGQKNLSGALDALGQLLEQGKE----MEQILAELLEYFRALLLYQADREYQ 301
Query: 711 KFF 713
+ +
Sbjct: 302 EIY 304
>gi|385262072|ref|ZP_10040187.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. SK643]
gi|385191813|gb|EIF39225.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. SK643]
Length = 551
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 161/292 (55%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVNGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I D +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHILYILEKEQISSDPEAVEIIARRAEGGMRDALSILDQALSLTQGNSLTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + + ++ L ++ + G ++ L + D+L
Sbjct: 242 GTISLRALDDYVAALAQQNISKALECLNLLFDNGKSMTRFVTDLLQYLRDLL 293
>gi|99080007|ref|YP_612161.1| DNA polymerase III subunits gamma and tau [Ruegeria sp. TM1040]
gi|99036287|gb|ABF62899.1| DNA polymerase III subunits gamma and tau [Ruegeria sp. TM1040]
Length = 608
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 159/295 (53%), Gaps = 6/295 (2%)
Query: 404 RNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIF 463
++G++Q L +KY P TF DLVGQ+ + + L NA ++ ++ G GTGKT+ ARI
Sbjct: 13 QSGQYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARII 72
Query: 464 ARALNC-----QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVT 518
A+ +NC Q +PCG C C + G+ ++ E+ I +++D++
Sbjct: 73 AKGMNCIGEDGQGGPTTEPCGKCEHCTAIMEGRHVDVMEMDAASRTGVGDIREIIDSVAY 132
Query: 519 SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKF 578
++Y+I++ D+ LS +++A+ K ++ P V FI ++ + +P ++SRCQ+F
Sbjct: 133 RAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRF 192
Query: 579 FFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRIS 637
+++ +I L+ IA+ E EI DAL LI ++GS RDA L+Q +S +
Sbjct: 193 DLRRIEPEVMIDLLRRIATSEQAEIADDALALITRAAEGSARDATSLLDQAISHGAGETT 252
Query: 638 VPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV 692
V+ ++GL +++DL+D+ L D + L G +P+A++ LA +
Sbjct: 253 ADQVRAMLGLADRGRVLDLMDMILRGDAAAALTELSAQYAEGADPMAVLRDLAEI 307
>gi|312897409|ref|ZP_07756833.1| DNA polymerase III, subunit gamma and tau [Megasphaera
micronuciformis F0359]
gi|310621470|gb|EFQ05006.1| DNA polymerase III, subunit gamma and tau [Megasphaera
micronuciformis F0359]
Length = 627
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 150/272 (55%), Gaps = 1/272 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P+TF D+VGQ + + L AV KV Y+F GP GTGKTS A+IFA+ALNC
Sbjct: 6 LYRKWRPKTFEDVVGQGRIMKTLQQAVENDKVAHAYLFSGPRGTGKTSTAKIFAKALNCV 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
PC C+ C G+S ++ E+ N E I L + + +I++
Sbjct: 66 HGPTSHPCNECDVCKHITSGESLDVVEIDAASNRSIEDIRQLRETVKFMPTEGHKKIYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P VVFIL ++ + +P I+SRCQ++ F ++ DI
Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPEHVVFILATTEPERIPMTILSRCQRYDFRRITADDIQK 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-ISVPLVQELVGLIS 649
L +IA KE I++ DA ++IA R+DG +RDA L+Q G R + +V++L+GL+
Sbjct: 186 RLAYIADKEEIDLKPDAARMIAVRADGGMRDALSLLDQCVGNGGRCVDEEIVRDLLGLVG 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVE 681
+ L + S ++ + +++ G E
Sbjct: 246 KDWLFSMTAALFSGRGETLIEGIDEVVQAGKE 277
>gi|312873576|ref|ZP_07733623.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
2052A-d]
gi|311090829|gb|EFQ49226.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
2052A-d]
Length = 587
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 199/376 (52%), Gaps = 16/376 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +++ PRTF +VGQ+ + L N++ R K+ ++F GP GTGKTSCA+IFA+A+
Sbjct: 7 YQALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI 66
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C++C++ D+G +I E+ N + I + D + + Y++
Sbjct: 67 NCMDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKV 126
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ +
Sbjct: 127 YIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQ 186
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +E I D+ +L++IA +DG +RD+ L+Q LS +I+ + G
Sbjct: 187 LVNRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITG 246
Query: 647 LISDEKLVDL-LDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT-VITDILAGSYDFT 704
K+ L LDL L+ T ++ + ++ G ++ ++ V+ +LA D T
Sbjct: 247 YADQVKIEALFLDL-LNKKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTT 305
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYV 764
LS +E+LR L + + L+++ND L L Q P + +V
Sbjct: 306 VTF----------LSANYLEQLR--LISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFV 353
Query: 765 LPSSSADTSFSHSPLD 780
+ S+ D + + S D
Sbjct: 354 VRISTQDINATVSQTD 369
>gi|398344136|ref|ZP_10528839.1| DNA polymerase III subunits gamma and tau [Leptospira inadai
serovar Lyme str. 10]
Length = 490
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 133/223 (59%)
Query: 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFAR 465
G H+ L++KY P+ F+D++ QNL AL NAV K+G Y+F+GP G GKT+ ARIFA+
Sbjct: 3 GNHEVLSRKYRPQRFQDVIHQNLAIGALQNAVKSGKIGHAYIFFGPRGVGKTTIARIFAK 62
Query: 466 ALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
LNC++ +PC C+SCI +G S ++ E+ N E+I +L DN+ + +Y
Sbjct: 63 RLNCKNPVDNEPCNECSSCIEITKGISGDVLEIDAASNRGIENIRELRDNVKFTPMGGKY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ L+ S++A+ K ++ P VVF+L ++ +P I+SRCQ F F K+
Sbjct: 123 KVYIIDEVHMLTDQSFNALLKTLEEPPSHVVFVLATTEYQKIPETILSRCQDFVFKKVPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ 628
+ + + + +E + D + L +A + DGS+RD +EQ
Sbjct: 183 SILQDYAENLCREEKTQYDTEGLFWVAKKGDGSVRDMLSFMEQ 225
>gi|342218883|ref|ZP_08711486.1| DNA polymerase III, subunit gamma and tau [Megasphaera sp. UPII
135-E]
gi|341588830|gb|EGS32205.1| DNA polymerase III, subunit gamma and tau [Megasphaera sp. UPII
135-E]
Length = 661
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 175/338 (51%), Gaps = 5/338 (1%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P++F D+VGQ V + L A+ K+ Y+F GP GTGKTS A+IFARA+NC+
Sbjct: 6 LYRKWRPKSFSDVVGQKQVTEILQKAICLDKIAHAYLFSGPRGTGKTSMAKIFARAINCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ PC C+ C G S ++ E+ N E I L + + + +I++
Sbjct: 66 HEQNGNPCNTCSICTQIIEGDSLDVVEIDAASNRSIEDIRTLRETIKFLPAEGRKKIYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P V+FIL ++ + +P I+SRCQ++ F ++ DI+
Sbjct: 126 DEVHMLTIEAFNALLKTLEEPPSHVIFILATTEPERIPITILSRCQRYEFHRISSDDIMS 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVGLIS 649
L +IA +E I + +A +L+A +++G +RDA L+Q G Q I +V++++GL+
Sbjct: 186 RLLYIAKEENISLTVEAARLLAVQAEGGMRDALSMLDQCVGNGTQYIDDNMVRQVLGLLG 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR 709
E + L +K + I+ G EP ++S I ++ T D
Sbjct: 246 KEWIFSLSTAIFHNQGKEIIKQIDHIIHLGKEPYIILSSFIEHIRALMFMQVHATSDVMA 305
Query: 710 RKFFRRQPLSKEEM----EKLRQALKTLSEAEKQLRMS 743
+ Q L K+ E+L LK L E Q++ S
Sbjct: 306 DYAEQMQELEKQAQSITSERLFYILKVLQETLLQVKTS 343
>gi|334144398|ref|YP_004537554.1| DNA polymerase III subunits gamma and tau [Thioalkalimicrobium
cyclicum ALM1]
gi|333965309|gb|AEG32075.1| DNA polymerase III, subunits gamma and tau [Thioalkalimicrobium
cyclicum ALM1]
Length = 632
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 160/283 (56%), Gaps = 1/283 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+ F +LVGQ V QALSNA+ +++V Y+F G G GKT+ ARIF++AL
Sbjct: 3 YQVLARKWRPKNFSELVGQTHVMQALSNALEQQRVHHAYLFTGTRGVGKTTIARIFSKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ PCG C++C++ D+G+ ++ EV E ++LDN+ + ++++
Sbjct: 63 NCEQGPSAHPCGQCSACLAIDQGRFVDLIEVDAASRTKVEDTREILDNVQYAPTQGRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V F+L ++ LP ++SRC +F ++
Sbjct: 123 YLIDEVHMLSKSSFNALLKTLEEPPPHVKFLLATTEPHKLPITVLSRCLQFNLLRLTTVQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ L I + E + + L LIA +DGS RDA L+Q ++ I+ VQ ++G
Sbjct: 183 LEQHLAMILTAEALAFEPGGLALIAKAADGSARDALSLLDQAIAYCAGNITQAAVQTMLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689
L+S +++ +L S + L + TGV+ +AL++QL
Sbjct: 243 LVSPQQVQAVLTTLQSGQSPALKALLLDLAATGVDYMALLNQL 285
>gi|403743528|ref|ZP_10953112.1| DNA polymerase III, subunits gamma and tau [Alicyclobacillus
hesperidum URH17-3-68]
gi|403122772|gb|EJY56971.1| DNA polymerase III, subunits gamma and tau [Alicyclobacillus
hesperidum URH17-3-68]
Length = 576
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 186/366 (50%), Gaps = 11/366 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P++F D +GQ V Q L NA+ K+ Y+F GP GTGKTS A++FA+A+
Sbjct: 3 YQALYRTWRPQSFADFIGQPHVRQTLMNALQSGKIAHAYLFCGPRGTGKTSAAKLFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C +C+S RG + +++E+ N + I +L D + + ++
Sbjct: 63 NCLAPQGVEPCNECAACVSITRGNNVDVEEIDAASNRGVDEIRELRDKVHYLPTSVRKKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+F+L ++ LP+ I+SRCQ+F F ++
Sbjct: 123 YIVDEVHMLTTEAFNALLKTLEEPPAHVLFLLATTEPHKLPNTIVSRCQRFDFHRIATET 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I+ LQ + +G + AL +A +DG LRDA LEQ + GQ I +V +VG
Sbjct: 183 IVERLQEVVRHQGWSAHESALWKLAEAADGGLRDALGLLEQAAAFGQGEIDDEVVASVVG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+ L+ L+ + ++ ++ L G + ++ L V+ D+ T D
Sbjct: 243 GVDTAALLALVSDLAATQHLDALRRLAAWYAAGKDATRIVHDLLQVLRDLFIVKLSPTDD 302
Query: 707 RHRRK---FFRRQPLSKEEM-EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 762
K +R SK E L A+ L E QLR + L AALL +
Sbjct: 303 ALGGKPIAPYRAVAESKRVTSEWLLTAVHKLGELYTQLRYLDQPRLALEAALLSM----- 357
Query: 763 YVLPSS 768
VLPS+
Sbjct: 358 -VLPSA 362
>gi|218263761|ref|ZP_03477753.1| hypothetical protein PRABACTJOHN_03443 [Parabacteroides johnsonii
DSM 18315]
gi|218222520|gb|EEC95170.1| hypothetical protein PRABACTJOHN_03443 [Parabacteroides johnsonii
DSM 18315]
Length = 606
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 155/288 (53%), Gaps = 2/288 (0%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC-QS 471
+KY P TFR +VGQ + L NA+ K+ Y+F GP G GKTSCARIFA+ +NC
Sbjct: 9 RKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINCLNP 68
Query: 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
+ C C SC + + +S NI E+ N + I L+D + P +Y++F+ D
Sbjct: 69 TADGEACNECESCKAFNEQRSYNIHELDAASNNSVDDIRALIDQVRIPPPIGKYKVFIID 128
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+ LS +++A K ++ P +FIL ++ + I+SRCQ + F ++ AD++
Sbjct: 129 EVHMLSSAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYDFSRISIADMVEH 188
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISD 650
L++++S EG+ + +AL +IA ++DG +RDA +Q +S I+ V + + ++
Sbjct: 189 LEYVSSCEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFTNGNITYQAVIDNLNVLDY 248
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA 698
E L D LS + + + L I+ G + +++ LA+ D+L
Sbjct: 249 EYYFRLTDAMLSGNVRSAILILNDILSKGFDGQNIITGLASHFRDLLV 296
>gi|423347337|ref|ZP_17325024.1| DNA polymerase III, subunit gamma and tau [Parabacteroides merdae
CL03T12C32]
gi|409217796|gb|EKN10770.1| DNA polymerase III, subunit gamma and tau [Parabacteroides merdae
CL03T12C32]
Length = 606
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 154/286 (53%), Gaps = 2/286 (0%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC-QSL 472
KY P TFR +VGQ + L NA+ K+ Y+F GP G GKTSCARIFA+ +NC
Sbjct: 10 KYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINCLNPT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ C C SC + + +S NI E+ N + I L+D + P +Y++F+ D+
Sbjct: 70 ADGEACNECESCKAFNEQRSYNIHELDAASNNSVDDIRALIDQVRIPPPIGKYKVFIIDE 129
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ P +FIL ++ + I+SRCQ + F ++ AD++ L
Sbjct: 130 VHMLSSAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYDFSRISIADMVEHL 189
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDE 651
++++S EG+ + +AL +IA ++DG +RDA +Q +S I+ V + + ++ E
Sbjct: 190 EYVSSCEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFTNGNITYQAVIDNLNVLDYE 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
L D LS + + + L I+ G + +++ LA+ D+L
Sbjct: 250 YYFRLTDAMLSGNVRSAILILNDILSKGFDGQNIITGLASHFRDLL 295
>gi|418093697|ref|ZP_12730826.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA49138]
gi|353765573|gb|EHD46115.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA49138]
Length = 551
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 175/337 (51%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLDLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVNLADIKSSLQ 338
>gi|309803539|ref|ZP_07697632.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
LactinV 11V1-d]
gi|308164423|gb|EFO66677.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
LactinV 11V1-d]
Length = 583
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 199/376 (52%), Gaps = 16/376 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +++ PRTF +VGQ+ + L N++ R K+ ++F GP GTGKTSCA+IFA+A+
Sbjct: 3 YQALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C++C++ D+G +I E+ N + I + D + + Y++
Sbjct: 63 NCMDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ +
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +E I D+ +L++IA +DG +RD+ L+Q LS +I+ + G
Sbjct: 183 LVNRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYKDTLAITG 242
Query: 647 LISDEKLVDL-LDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT-VITDILAGSYDFT 704
K+ L LDL L+ T ++ + ++ G ++ ++ V+ +LA D T
Sbjct: 243 YADQVKIEALFLDL-LNRKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTT 301
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYV 764
LS +E+LR L + + L+++ND L L Q P + +V
Sbjct: 302 VTF----------LSANYLEQLR--LISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFV 349
Query: 765 LPSSSADTSFSHSPLD 780
+ S+ D + + S D
Sbjct: 350 VRISTQDINATVSQTD 365
>gi|456864713|gb|EMF83105.1| DNA polymerase III, subunit gamma and tau [Leptospira weilii
serovar Topaz str. LT2116]
Length = 487
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 152/271 (56%), Gaps = 3/271 (1%)
Query: 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFAR 465
G H+ L++KY P+ FRD++ Q+L AL NA+ K+G Y+F+GP G GKT+ ARI A+
Sbjct: 3 GTHEVLSRKYRPQIFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAK 62
Query: 466 ALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
LNCQ+ +PC CNSC +G S ++ E+ N E+I +L DN+ + +Y
Sbjct: 63 RLNCQNPIDNEPCNKCNSCTEITQGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ L+ S++A+ K ++ P +VFIL ++ +P I+SRCQ F F K+
Sbjct: 123 KVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQEL 644
+ + + + E ++ D++ L +A + DGS+RD +EQ + ++ ++++
Sbjct: 183 SVLQDYSERLCKIENVQYDQEGLFWVAKKGDGSVRDMLSFMEQAIVFTDSKLLGTGIRKM 242
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVI 675
+G E L + + D N K+L +I
Sbjct: 243 IGYHGIEFLTSFIKSLIDPD--NHSKSLEII 271
>gi|329116172|ref|ZP_08244889.1| DNA polymerase III, subunit gamma and tau [Streptococcus parauberis
NCFD 2020]
gi|333905296|ref|YP_004479167.1| DNA polymerase III subunit gamma/tau [Streptococcus parauberis KCTC
11537]
gi|326906577|gb|EGE53491.1| DNA polymerase III, subunit gamma and tau [Streptococcus parauberis
NCFD 2020]
gi|333120561|gb|AEF25495.1| DNA polymerase III subunit gamma/tau [Streptococcus parauberis KCTC
11537]
gi|456371264|gb|EMF50160.1| DNA polymerase III subunits gamma and tau [Streptococcus parauberis
KRS-02109]
gi|457095051|gb|EMG25546.1| DNA polymerase III subunits gamma and tau [Streptococcus parauberis
KRS-02083]
Length = 558
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 163/293 (55%), Gaps = 9/293 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ++++ L AV +K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESKKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPNQVNGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRANYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKQKD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L I + E I +++AL LIA R++G +RDA L+Q LSL +I++ + +E+
Sbjct: 182 IKAHLMHILTLENIPFEEEALGLIARRAEGGMRDALSILDQALSLSPDDQITLSIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA 698
G IS L D + ++ + + NL I + G MS+ A TD+LA
Sbjct: 242 GSISILALDDYVANIINQEAQAALSNLETIFDNGKS----MSRFA---TDLLA 287
>gi|168181143|ref|ZP_02615807.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum
NCTC 2916]
gi|226947244|ref|YP_002802335.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A2
str. Kyoto]
gi|387816259|ref|YP_005676603.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
H04402 065]
gi|182668020|gb|EDT79999.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum
NCTC 2916]
gi|226840992|gb|ACO83658.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A2
str. Kyoto]
gi|322804300|emb|CBZ01850.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
H04402 065]
Length = 541
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 192/356 (53%), Gaps = 10/356 (2%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ PRTF+++VGQ + L N V+ +++ Y+F G GTGKTS A+I ++A+NC
Sbjct: 6 LYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNCL 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ--YRIF 528
+ + +PC C C + G ++ E+ E I ++++N+ PP + +++
Sbjct: 66 NPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENV--KYPPQEGKNKVY 123
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ L+ ++ +A K ++ P V+FIL ++ LP I+SRCQ+F F ++++ +I
Sbjct: 124 IMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIRNEEI 183
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGL 647
L+ I S++GI D +L LIA SDG++RDA L+Q+ G ++ V +++GL
Sbjct: 184 FERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDMLGL 243
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR 707
+++E L+ + + + D +++ + I+ +G + + + T + +IL +
Sbjct: 244 VTNENLLRITNSIIEKDVEKSMRIIEDIVLSGKDIYNFIKDMITHLRNILMVKVSKNPNE 303
Query: 708 HRRKFFRRQPLSKEEMEKLR-----QALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
L KE+ EK+R + +K L EAE+Q + +L A+L++
Sbjct: 304 ILDMSSENIDLVKEQSEKIRIEEIMRNIKILQEAEQQSKWVKQNRIYLELAVLKMC 359
>gi|421858825|ref|ZP_16291078.1| DNA polymerase III [Paenibacillus popilliae ATCC 14706]
gi|410831587|dbj|GAC41515.1| DNA polymerase III [Paenibacillus popilliae ATCC 14706]
Length = 585
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 177/356 (49%), Gaps = 5/356 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H L + + P++F D+VGQ + Q L N++ R+ Y+F GP GTGKT+ A+I A+A+
Sbjct: 3 HIALYRAWRPQSFGDMVGQQHIIQTLQNSLRERRFSHAYLFSGPRGTGKTTAAKIMAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ P+PC C +C G ++ E+ N E I DL + + + ++++
Sbjct: 63 NCEQGPGPEPCNECEACRRITTGAVMDVVEIDAASNRGVEEIRDLREKVKYAPSEVRHKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P V+FIL ++ LP I+SRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPAHVMFILATTEPHRLPATIVSRCQRFDFRRVTLEE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ L+ + EGIE +D+L IA SDG +RDA L+Q S R+ V ++ G
Sbjct: 183 QVARLEQVCRDEGIEAAQDSLIYIAKLSDGGMRDAISLLDQAASFTNGRLDYRQVLDITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
I +E+ D+ D + + + +M+ G M L D+L +
Sbjct: 243 GIPEEQFADIARAVQVGDVGSVLVTVESMMQGGKSADKCMESLLFFFRDLLMLKMVSDGE 302
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+R R R+ E L + + TL+ + ++ + T ALLQ+A
Sbjct: 303 GMTNRLTRVEAFRELADAFEAASLFRIIDTLNRYQTDMKYAVQPQTLFEVALLQIA 358
>gi|422423441|ref|ZP_16500394.1| DNA polymerase III subunit gamma/tau, partial [Listeria seeligeri
FSL S4-171]
gi|313635974|gb|EFS01905.1| DNA polymerase III subunit gamma/tau [Listeria seeligeri FSL
S4-171]
Length = 547
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/326 (29%), Positives = 171/326 (52%), Gaps = 5/326 (1%)
Query: 437 VMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIK 496
+++ K Y+F GP GTGKTS A+IFA+A+NC+ +PC C C G ++
Sbjct: 1 IIQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHDGEPCNECEICKGTTDGSIPDVL 60
Query: 497 EVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVV 556
E+ N E I D+ + + + ++Y++++ D+ LS +++A+ K ++ P+ V+
Sbjct: 61 EIDAASNNGVEEIRDIREKVKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVI 120
Query: 557 FILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSD 616
FIL ++ LP IISR Q+F F ++ DII L++I +E I D+ AL ++A ++
Sbjct: 121 FILATTEPHKLPLTIISRVQRFDFKRITTQDIIGRLEFILKEEKIPYDEKALMIVARAAE 180
Query: 617 GSLRDAEMTLEQLSLLG-QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVI 675
G +RDA L+Q+ G + ++V E+ G ++ L L+ A D + L +
Sbjct: 181 GGMRDALSLLDQVISYGSEEVTVEDALEITGSVAQGLLTKLVSAAFDGDAAEAISTLTAL 240
Query: 676 METGVEPLALMSQLATVITDIL----AGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALK 731
+ G +P+ L+ L D+L A S + T +R + + K+ + +K
Sbjct: 241 LAEGKDPVRLVEDLLVFFRDVLLYQKAPSLEETLERALVDDDFVALAKRADSLKIYEFVK 300
Query: 732 TLSEAEKQLRMSNDKLTWLTAALLQL 757
L+ A++Q+R SN ++ AL+QL
Sbjct: 301 ILNTAQQQMRFSNHPGIYVEVALVQL 326
>gi|312875754|ref|ZP_07735749.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
2053A-b]
gi|311088746|gb|EFQ47195.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
2053A-b]
Length = 583
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 199/376 (52%), Gaps = 16/376 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +++ PRTF +VGQ+ + L N++ R K+ ++F GP GTGKTSCA+IFA+A+
Sbjct: 3 YQALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C++C++ D+G +I E+ N + I + D + + Y++
Sbjct: 63 NCMDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P VVFIL ++ L +P IISR Q++ F ++ +
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
++ +++I +E I D+ +L++IA +DG +RD+ L+Q LS +I+ + G
Sbjct: 183 LVNRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYKDTLAITG 242
Query: 647 LISDEKLVDL-LDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT-VITDILAGSYDFT 704
K+ L LDL L+ T ++ + ++ G ++ ++ V+ +LA D T
Sbjct: 243 YADQVKIEALFLDL-LNKKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTT 301
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYV 764
LS +E+LR L + + L+++ND L L Q P + +V
Sbjct: 302 VTF----------LSANYLEQLR--LISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFV 349
Query: 765 LPSSSADTSFSHSPLD 780
+ S+ D + + S D
Sbjct: 350 VRISTQDVNATGSQND 365
>gi|256841270|ref|ZP_05546777.1| DNA polymerase III subunit gamma/tau [Parabacteroides sp. D13]
gi|256737113|gb|EEU50440.1| DNA polymerase III subunit gamma/tau [Parabacteroides sp. D13]
Length = 601
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 155/288 (53%), Gaps = 2/288 (0%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC-QS 471
+KY P TFR +VGQ + L NA+ K+ Y+F GP G GKTSCARIFA+ +NC
Sbjct: 24 RKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINCLNP 83
Query: 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
+ C C SC + + +S NI E+ N + I L+D + P +Y++F+ D
Sbjct: 84 TADGEACNACESCRAFNEQRSYNIHELDAASNNSVDDIRTLIDQVRIPPPIGKYKVFIID 143
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+ L+ +++A K ++ P +FIL ++ + I+SRCQ + F ++ AD++
Sbjct: 144 EVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYDFSRISIADMVEH 203
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISD 650
LQ+++S+EG+ + +AL +IA ++DG +RDA +Q +S I+ V + + ++
Sbjct: 204 LQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFTNGNITYQAVIDNLNVLDY 263
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA 698
E L D LS + ++ L I+ G + +++ LA D+L
Sbjct: 264 EYYFRLTDAILSGNVRASLLILNEILGKGFDGQNIITGLAGHFRDLLV 311
>gi|297582360|ref|YP_003698140.1| DNA polymerase III subunits gamma and tau [Bacillus
selenitireducens MLS10]
gi|297140817|gb|ADH97574.1| DNA polymerase III, subunits gamma and tau [Bacillus
selenitireducens MLS10]
Length = 600
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 165/305 (54%), Gaps = 5/305 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ +D+VGQ + + L NA++++K+ Y+F GP GTGKTS A+I A+A+
Sbjct: 3 YQALYRVWRPQVLKDVVGQEHITRTLRNALLQQKLSHAYLFSGPRGTGKTSAAKIIAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C++C G ++ E+ N + I D+ D + + + Y++
Sbjct: 63 NCEQAPVEEPCNTCSTCTGIQDGSIVDVIEIDAASNNGVDEIRDIRDKVKFAPSGASYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ +++A+ K ++ PR V+FIL ++ +P IISRCQ+F F ++
Sbjct: 123 YIIDEVHMLTTGAFNALLKTLEEPPRHVIFILATTEPHKIPLTIISRCQRFDFKRITAHT 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+I ++ I + +D DAL +IA S+G +RDA L+Q +S +++ V ++G
Sbjct: 183 MIKRMEEIIEDGDLAVDPDALSMIARASEGGMRDALSLLDQAISYADTSVTLDDVLSIIG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
S + + D+++ L + + + +M G +P M + D+L A + D
Sbjct: 243 AASQDLMYDVMEALLDQQVADGLTAIDRLMSDGKDPGRFMEDFIFLTRDLLMVQAAPALD 302
Query: 703 FTKDR 707
+ DR
Sbjct: 303 ESGDR 307
>gi|118445160|ref|YP_879267.1| DNA polymerase III subunits gamma and tau [Clostridium novyi NT]
gi|118135616|gb|ABK62660.1| DNA polymerase III, gamma and tau subunits [Clostridium novyi NT]
Length = 539
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 188/356 (52%), Gaps = 10/356 (2%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P+TF ++VGQ + L N + ++ Y+F G GTGKTS A+IF++A+NC
Sbjct: 6 LYREWRPQTFDEVVGQEHITLTLKNQMKNNRIAHAYLFCGTRGTGKTSTAKIFSKAVNCL 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ--YRIF 528
+ + +PC C C G S ++ E+ + + I DL++ + PP + Y+++
Sbjct: 66 NPQDGEPCNECEMCKKISAGLSIDVSEMDAASHNKVDDIRDLIEEV--KYPPQEGRYKVY 123
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ L+ + +A K ++ P V+FIL ++ LP I+SRCQ+F F ++K DI
Sbjct: 124 IMDEAHMLTQGAVNAFLKTLEEPPENVIFILATTDPQKLPITILSRCQRFDFKRIKSDDI 183
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGL 647
+ L I ++GI D +LKLIA SDG++RDA L+Q +G ++ V ++GL
Sbjct: 184 LGRLIKITKEQGIFGDNKSLKLIARMSDGAMRDALSILDQAISMGNGKVDYEQVINMLGL 243
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY-----D 702
+++E L+ L + + D N+++ + ++ G + + + + +++ D
Sbjct: 244 VTNENLIKLTNTIIDKDVENSIRIIDDVVYAGKDINLFIKDMIHHMRNLMMAKVTQKPED 303
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
F ++ +K +E++ + ++ L E E+Q + S +L A++++
Sbjct: 304 VLDMSEENINFLKEQANKIRIEEIMRCIRILQECEEQSKWSKQGRIYLELAVIKMC 359
>gi|194336682|ref|YP_002018476.1| DNA polymerase III subunits gamma and tau [Pelodictyon
phaeoclathratiforme BU-1]
gi|194309159|gb|ACF43859.1| DNA polymerase III, subunits gamma and tau [Pelodictyon
phaeoclathratiforme BU-1]
Length = 401
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 150/296 (50%), Gaps = 14/296 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q + +KY P F D+ Q V + + N++ +VG Y+F G G GKT+ AR+FA+AL
Sbjct: 3 YQVIARKYRPVKFADITAQEHVTRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAL 62
Query: 468 NCQSLEQ--------PKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTS 519
NCQ + + +PCG C SC D G S NI E N + I L +N+
Sbjct: 63 NCQKMMEDAEYLQQVTEPCGECESCRDFDAGTSLNIAEFDAASNNSVDDIRTLRENVRYG 122
Query: 520 RPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFF 579
YR+++ D+ LS +++A K ++ P +FI ++ L +P I SRCQ+F
Sbjct: 123 PQKGTYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFN 182
Query: 580 FPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR---- 635
F ++ +I LQ+I E I +D DAL+LI ++ GS+RDA+ L+Q+
Sbjct: 183 FKRIPLEEIQKQLQFICDAEQITVDGDALQLIGRKAQGSMRDAQSILDQVIAFSAENDHT 242
Query: 636 --ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689
I+ V EL+ I DE L ++ D + V + + ++ G + + +L
Sbjct: 243 GSITYSGVAELLNYIDDEHLFEVTDAVAERNAVKMLDVAQFVIRNGYDEQDFLEKL 298
>gi|430833786|ref|ZP_19451797.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0679]
gi|430837096|ref|ZP_19455072.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0680]
gi|430486191|gb|ELA63059.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0679]
gi|430487877|gb|ELA64585.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0680]
Length = 581
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 191/378 (50%), Gaps = 18/378 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ V Q L NA++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C S G ++ E+ N E I + D + + Y++
Sbjct: 63 NCPNSKDGEPCNECEMCRSITSGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ V+FIL ++ +P IISR Q+F F ++ AD
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTAD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L++I + I + AL +IA ++G +RDA L+Q +S I++ ++ G
Sbjct: 183 IVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++DE + L + + ++ L I+ G E + + D+L A +
Sbjct: 243 SLTDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQYCRDLLMYQQAPNLV 302
Query: 703 FTKDRHRRKFFRR--QPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760
+ R F Q +S +++ + +K LS+ + ++R +N +L A ++LA
Sbjct: 303 EEQSSTIRSTFTELAQTVSADQLFSM---IKILSDTQNEIRFTNSAAIYLEVATVKLAQ- 358
Query: 761 QQYVLPSS---SADTSFS 775
LPS+ SAD +F+
Sbjct: 359 ----LPSASVPSADVAFA 372
>gi|359728995|ref|ZP_09267691.1| DNA polymerase III subunits gamma and tau [Leptospira weilii str.
2006001855]
gi|417780039|ref|ZP_12427811.1| DNA polymerase III, subunit gamma and tau [Leptospira weilii str.
2006001853]
gi|410779726|gb|EKR64333.1| DNA polymerase III, subunit gamma and tau [Leptospira weilii str.
2006001853]
Length = 487
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 132/223 (59%)
Query: 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFAR 465
G H+ L++KY P+ FRD++ Q+L AL NA+ K+G Y+F+GP G GKT+ ARI A+
Sbjct: 3 GTHEVLSRKYRPQIFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAK 62
Query: 466 ALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
LNCQ+ +PC CNSC +G S ++ E+ N E+I +L DN+ + +Y
Sbjct: 63 RLNCQNPIDNEPCNKCNSCTEITQGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ L+ S++A+ K ++ P +VFIL ++ +P I+SRCQ F F K+
Sbjct: 123 KVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ 628
+ + + + E ++ D++ L +A + DGS+RD +EQ
Sbjct: 183 SVLQDYSERLCKIENVQYDQEGLFWVAKKGDGSVRDMLSFMEQ 225
>gi|372279072|ref|ZP_09515108.1| DNA polymerase III subunits gamma and tau [Oceanicola sp. S124]
Length = 602
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 160/296 (54%), Gaps = 6/296 (2%)
Query: 403 NRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARI 462
++G +Q L +KY P TF DLVGQ+ + + L NA ++ ++ G GTGKT+ ARI
Sbjct: 8 TQSGPYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARI 67
Query: 463 FARALNCQSLE-----QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV 517
A+ +NC + +PCG C C + G+ ++ E+ N I +++D++
Sbjct: 68 IAKGMNCIGSDGTGGPTTEPCGQCEHCRAIMAGRHVDVMEMDAASNTSVNDIREIIDSVN 127
Query: 518 TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQK 577
++Y+I++ D+ LS +++A+ K ++ P V FI ++ + +P ++SRCQ+
Sbjct: 128 YRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQR 187
Query: 578 FFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRI 636
F +++ +I L+ IA +EG EI+ DAL LI ++GS RDA L+Q +S
Sbjct: 188 FDLRRIEPEVMIALLRKIAGREGAEINDDALALITRAAEGSARDATSLLDQAISHGAGET 247
Query: 637 SVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV 692
+ V+ ++GL +++DL ++ + D + L G +PLA++ LA +
Sbjct: 248 TAEQVRAMLGLADRGRVMDLYEMIMKGDAAAALTELSAQYADGADPLAVLRDLAEI 303
>gi|325105012|ref|YP_004274666.1| DNA polymerase III subunits gamma and tau [Pedobacter saltans DSM
12145]
gi|324973860|gb|ADY52844.1| DNA polymerase III, subunits gamma and tau [Pedobacter saltans DSM
12145]
Length = 605
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 150/286 (52%), Gaps = 2/286 (0%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
KY P TF +VGQ + L NA+ ++ ++F GP G GKT+CARI A+ +NCQ+L
Sbjct: 10 KYRPVTFESVVGQLHITNTLKNAIKSNQLAQAFLFCGPRGVGKTTCARILAKTINCQNLT 69
Query: 474 -QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
Q + CG C SC S G S N E+ N + I +L+D + +Y++++ D+
Sbjct: 70 AQGEACGICESCNSFLHGNSFNFHELDAASNNSVDDIRNLIDQVRIPPQGGKYKVYIIDE 129
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ P +FIL ++ + I+SRCQ F F ++K D+ L
Sbjct: 130 VHMLSQSAFNAFLKTLEEPPAYAIFILATTEKHKILPTILSRCQIFDFNRIKVEDMAGHL 189
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-ISVPLVQELVGLISDE 651
IA++E I D D L LIA ++DG LRDA +Q++ R IS V + + ++ +
Sbjct: 190 SKIATREEITFDNDGLHLIAQKADGGLRDALSMFDQIASFSNRNISYQAVIDNLNILDYD 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
L D DT +T+ I+ G + +S LA+ ++L
Sbjct: 250 YYFKLTDFLNQEDTASTLLLFNEILNNGFDGNHFISGLASHFRNVL 295
>gi|418146088|ref|ZP_12782870.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA13637]
gi|421217368|ref|ZP_15674269.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2070335]
gi|353814884|gb|EHD95106.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae GA13637]
gi|395584854|gb|EJG45246.1| DNA polymerase III, subunits gamma and tau [Streptococcus
pneumoniae 2070335]
Length = 551
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/337 (29%), Positives = 175/337 (51%), Gaps = 3/337 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS L D + D + L ++ + G ++ + D+L
Sbjct: 242 GTISLPALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDFLHYLRDLLIVQTGGEN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
>gi|417904260|ref|ZP_12548089.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21269]
gi|341847806|gb|EGS88979.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21269]
Length = 555
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/375 (26%), Positives = 187/375 (49%), Gaps = 11/375 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + Y P++F D+VGQ V + L NA+ + K Y+F GP GTGKTS A++FA+A+
Sbjct: 3 YQALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C +G + ++ E+ N + I ++ D + + S+Y++
Sbjct: 63 NCLNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ +++A+ K ++ P +FIL ++ +P IISR Q+F F +
Sbjct: 123 YIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I+ L+++A + IE + +AL IA S+G +RDA ++Q G +++ + G
Sbjct: 183 IVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+ DE L L D + D + K + G E + +I D++ D +
Sbjct: 243 SVHDEALDHLFDDIVQGDVQASFKKYHQFITEGKE-------VNRLINDMIYFVRDTIMN 295
Query: 707 RHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA---PDQQY 763
+ K + L E++ L Q + +++ +R S ++ L++LA DQ
Sbjct: 296 KTSEKDTEYRALMNLELDMLYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLAEQIKDQPQ 355
Query: 764 VLPSSSADTSFSHSP 778
V+ + + + SP
Sbjct: 356 VIANVAEPAQIASSP 370
>gi|314948526|ref|ZP_07851906.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
TX0082]
gi|313645023|gb|EFS09603.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
TX0082]
Length = 581
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 191/378 (50%), Gaps = 18/378 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ V Q L NA++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C S G ++ E+ N E I + D + + Y++
Sbjct: 63 NCPNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ V+FIL ++ +P IISR Q+F F ++ AD
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTAD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L++I + I + AL +IA ++G +RDA L+Q +S I++ ++ G
Sbjct: 183 IVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++DE + L + + ++ L I+ G E + + D+L A +
Sbjct: 243 SLTDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQYCRDLLMYQQAPNLV 302
Query: 703 FTKDRHRRKFFRR--QPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760
+ R F Q +S +++ + +K LS+ + ++R +N +L A ++LA
Sbjct: 303 EEQSSTIRSTFTELAQTVSADQLFSM---IKILSDTQNEIRFTNSAAIYLEVATVKLAQ- 358
Query: 761 QQYVLPSS---SADTSFS 775
LPS+ SAD +F+
Sbjct: 359 ----LPSASVPSADVAFA 372
>gi|398349161|ref|ZP_10533864.1| DNA polymerase III subunits gamma and tau [Leptospira broomii str.
5399]
Length = 490
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 142/242 (58%), Gaps = 1/242 (0%)
Query: 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFAR 465
G H+ L++KY P+ F+D++ QNL AL NAV K+G Y+F+GP G GKT+ ARIFA+
Sbjct: 3 GNHEVLSRKYRPQRFQDVIHQNLAIGALQNAVKSGKIGHAYIFFGPRGVGKTTIARIFAK 62
Query: 466 ALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
LNC++ +PC C+SCI +G S ++ E+ N E+I +L DN+ + +Y
Sbjct: 63 RLNCKNPVDNEPCNECSSCIEITKGISGDVLEIDAASNRGIENIRELRDNVKFTPMGGKY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ L+ S++A+ K ++ P VVF+L ++ +P I+SRCQ F F K+
Sbjct: 123 KVYIIDEVHMLTDQSFNALLKTLEEPPPHVVFVLATTEYQKIPETILSRCQDFVFKKVPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQEL 644
+ + + + +E + D + L +A + DGS+RD +EQ L +I ++++
Sbjct: 183 SVLQDYAENLCREEKTQYDTEGLFWVAKKGDGSVRDMLSFMEQALVFTDNKIIGTEIRKM 242
Query: 645 VG 646
+G
Sbjct: 243 IG 244
>gi|389571541|ref|ZP_10161632.1| DNA polymerase III subunit gamma/tau [Bacillus sp. M 2-6]
gi|388428780|gb|EIL86574.1| DNA polymerase III subunit gamma/tau [Bacillus sp. M 2-6]
Length = 570
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 158/291 (54%), Gaps = 1/291 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ + + L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQVFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C++C G ++ E+ N + I D+ D + + Y++
Sbjct: 63 NCEKSPVSEPCNECDACRGITTGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P +FIL ++ +P IISRCQ+F F ++ D
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQRFDFKRITTKD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ ++ I E + I + +L++IAS +DG +RDA L+Q +S G+++++ + G
Sbjct: 183 IVGRMEKIVDAESLNIQEGSLEIIASAADGGMRDALSLLDQAISFSGEQLTIDDALLITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+S + L + + + L +++ G + L+ + D+L
Sbjct: 243 AVSQHFISQLAEAIFEQNIAIALDTLNELLQQGKDAAKLIEDMIFYFRDML 293
>gi|430826860|ref|ZP_19445029.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0164]
gi|430444609|gb|ELA54444.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0164]
Length = 581
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 191/378 (50%), Gaps = 18/378 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + + F D+VGQ V Q L NA++ K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + +PC C C S G ++ E+ N E I + D + + Y++
Sbjct: 63 NCPNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ V+FIL ++ +P IISR Q+F F ++ AD
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTAD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L++I + I + AL +IA ++G +RDA L+Q +S I++ ++ G
Sbjct: 183 IVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSYD 702
++DE + L + + ++ L I+ G E + + D+L A +
Sbjct: 243 SLTDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQYCRDLLTYQQAPNLV 302
Query: 703 FTKDRHRRKFFRR--QPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760
+ R F Q +S +++ + +K LS+ + ++R +N +L A ++LA
Sbjct: 303 EEQSSTIRSTFTELAQTVSADQLFSM---IKILSDTQNEIRFTNSAAIYLEVATVKLAQ- 358
Query: 761 QQYVLPSS---SADTSFS 775
LPS+ SAD +F+
Sbjct: 359 ----LPSASVPSADVAFA 372
>gi|148378038|ref|YP_001252579.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A
str. ATCC 3502]
gi|153932975|ref|YP_001382437.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A
str. ATCC 19397]
gi|153935315|ref|YP_001385990.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A
str. Hall]
gi|421837987|ref|ZP_16272005.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
CFSAN001627]
gi|148287522|emb|CAL81584.1| DNA polymerase III subunit gamma/tau [Clostridium botulinum A str.
ATCC 3502]
gi|152929019|gb|ABS34519.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A
str. ATCC 19397]
gi|152931229|gb|ABS36728.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A
str. Hall]
gi|409739731|gb|EKN40308.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
CFSAN001627]
Length = 541
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 192/356 (53%), Gaps = 10/356 (2%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ PRTF+++VGQ + L N V+ +++ Y+F G GTGKTS A+I ++A+NC
Sbjct: 6 LYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNCL 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ--YRIF 528
+ + +PC C C + G ++ E+ E I ++++N+ PP + +++
Sbjct: 66 NPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENV--KYPPQEGKNKVY 123
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ L+ ++ +A K ++ P V+FIL ++ LP I+SRCQ+F F ++++ +I
Sbjct: 124 IMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIRNEEI 183
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGL 647
L+ I S++GI D +L LIA SDG++RDA L+Q+ G ++ V +++GL
Sbjct: 184 FERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDMLGL 243
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR 707
+++E L+ + + + D +++ + I+ +G + + + T + +IL +
Sbjct: 244 VTNENLLRITNSIIEKDVEKSMRIIEDIVLSGKDIYNFIKDMITHLRNILMVKVSKNPNE 303
Query: 708 HRRKFFRRQPLSKEEMEKLR-----QALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
L KE+ EK+R + +K L EAE+Q + +L A+L++
Sbjct: 304 ILDMSSENIDLVKEQSEKIRIEEIMRNIKILQEAEQQSKWVKQNRIYLELAVLKMC 359
>gi|53714518|ref|YP_100510.1| DNA polymerase III subunit gamma/tau [Bacteroides fragilis YCH46]
gi|423270984|ref|ZP_17249955.1| DNA polymerase III, subunit gamma and tau [Bacteroides fragilis
CL05T00C42]
gi|423274808|ref|ZP_17253754.1| DNA polymerase III, subunit gamma and tau [Bacteroides fragilis
CL05T12C13]
gi|52217383|dbj|BAD49976.1| DNA polymerase III subunit gamma/tau [Bacteroides fragilis YCH46]
gi|392698908|gb|EIY92090.1| DNA polymerase III, subunit gamma and tau [Bacteroides fragilis
CL05T00C42]
gi|392704087|gb|EIY97226.1| DNA polymerase III, subunit gamma and tau [Bacteroides fragilis
CL05T12C13]
Length = 614
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 178/352 (50%), Gaps = 8/352 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
KY P TF +VGQ + L NA+ +K+ Y+F GP G GKT+CARIFA+ +NC +L
Sbjct: 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLT 69
Query: 474 QP-KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ C C SC++ + +S NI E+ N + I L++ + +Y++++ D+
Sbjct: 70 ADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDE 129
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ PR +FIL ++ + I+SRCQ + F ++ D + L
Sbjct: 130 VHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVDDTVNHL 189
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDE 651
++ASKEGI + +AL +IA ++DG +RDA +Q +S G I+ V E + ++ E
Sbjct: 190 TYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNVLDYE 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR-- 709
L D L + + ++ G + ++ L++ D+L T
Sbjct: 250 YYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAATLQLLEVG 309
Query: 710 ---RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R+ ++ Q K + L +A+K ++ + R S +K + L+Q+A
Sbjct: 310 AGIRQRYQEQA-QKCALPFLYRAMKLCNDCDMNYRASKNKRLLVELTLIQVA 360
>gi|325977937|ref|YP_004287653.1| DNA polymerase III subunit gamma/tau [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|325177865|emb|CBZ47909.1| DNA polymerase III subunit gamma/tau [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
Length = 559
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 157/292 (53%), Gaps = 2/292 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +V+ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQTVVSTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPNQVNGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ V+FIL ++ L +P I+SR Q+F F +K A
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVIFILATTELHKIPTTILSRVQRFEFKAIKLAA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L I KE I ++DAL LIA ++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IREHLANILDKEEISYEEDALTLIARCAEGGMRDALSILDQALSLTPDNHVSLAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + L+ T + NL I ++G + L + D+L
Sbjct: 242 GSISMTALDDFVANVLANQTSQALANLETIFDSGKSMNRFATDLLNYLRDLL 293
>gi|306833147|ref|ZP_07466277.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus bovis
ATCC 700338]
gi|304424721|gb|EFM27857.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus bovis
ATCC 700338]
Length = 559
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 159/292 (54%), Gaps = 6/292 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY +TF ++VGQ +++ L AV K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQTFDEMVGQTVISSTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C+ C G ++ E+ N + I ++ D + + Y++
Sbjct: 62 NCPNQVNGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ VVFIL ++ L +P I+SR Q+F F +K A
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKLAA 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I L I KE I ++DAL LIA ++G +RDA L+Q LSL +S+ + +E+
Sbjct: 182 IREHLANILDKEEISYEEDALTLIAHCAEGGMRDALSILDQALSLTPDNHVSLAIAEEIT 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
G IS L D + L+ T + NL I ++G MS+ AT + + L
Sbjct: 242 GSISMIALDDFVANVLANQTSQALTNLETIFDSGKS----MSRFATDLLNYL 289
>gi|60682540|ref|YP_212684.1| DNA polymerase III [Bacteroides fragilis NCTC 9343]
gi|60493974|emb|CAH08766.1| putative DNA polymerase III [Bacteroides fragilis NCTC 9343]
Length = 614
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 178/352 (50%), Gaps = 8/352 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
KY P TF +VGQ + L NA+ +K+ Y+F GP G GKT+CARIFA+ +NC +L
Sbjct: 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLT 69
Query: 474 QP-KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ C C SC++ + +S NI E+ N + I L++ + +Y++++ D+
Sbjct: 70 ADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDE 129
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ PR +FIL ++ + I+SRCQ + F ++ D + L
Sbjct: 130 VHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVDDTVNHL 189
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDE 651
++ASKEGI + +AL +IA ++DG +RDA +Q +S G I+ V E + ++ E
Sbjct: 190 TYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNVLDYE 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR-- 709
L D L + + ++ G + ++ L++ D+L T
Sbjct: 250 YYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAATLQLLEVG 309
Query: 710 ---RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R+ ++ Q K + L +A+K ++ + R S +K + L+Q+A
Sbjct: 310 AGIRQRYQEQA-QKCALPFLYRAMKLCNDCDMNYRASKNKRLLVELTLIQVA 360
>gi|259415625|ref|ZP_05739546.1| DNA polymerase III subunits gamma and tau [Silicibacter sp.
TrichCH4B]
gi|259348855|gb|EEW60617.1| DNA polymerase III subunits gamma and tau [Silicibacter sp.
TrichCH4B]
Length = 625
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 160/295 (54%), Gaps = 6/295 (2%)
Query: 404 RNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIF 463
++G++Q L +KY P TF DLVGQ+ + + L NA ++ ++ G GTGKT+ ARI
Sbjct: 30 QSGQYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARII 89
Query: 464 ARALNC-----QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVT 518
A+ +NC Q +PCG C C + G+ ++ E+ I +++D++
Sbjct: 90 AKGMNCIGEDGQGGPTTEPCGKCEHCTAIMEGRHVDVMEMDAASRTGVGDIREIIDSVAY 149
Query: 519 SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKF 578
++Y+I++ D+ LS +++A+ K ++ P V FI ++ + +P ++SRCQ+F
Sbjct: 150 RAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRF 209
Query: 579 FFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRIS 637
+++ +I L+ IA+ E EI +DAL LI ++GS RDA L+Q +S +
Sbjct: 210 DLRRIEPEVMIDLLRRIATNETAEIAEDALALITRAAEGSARDATSLLDQAISHGAGETT 269
Query: 638 VPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV 692
V+ ++GL +++DL+D+ L D + L G +P+A++ LA +
Sbjct: 270 ADQVRAMLGLADRGRVLDLMDMILRGDAAAALTELSGQYAEGADPMAVLRDLAEI 324
>gi|383119265|ref|ZP_09940004.1| DNA polymerase III, subunit gamma and tau [Bacteroides sp. 3_2_5]
gi|423250912|ref|ZP_17231927.1| DNA polymerase III, subunit gamma and tau [Bacteroides fragilis
CL03T00C08]
gi|423254238|ref|ZP_17235168.1| DNA polymerase III, subunit gamma and tau [Bacteroides fragilis
CL03T12C07]
gi|251946485|gb|EES86862.1| DNA polymerase III, subunit gamma and tau [Bacteroides sp. 3_2_5]
gi|392651869|gb|EIY45531.1| DNA polymerase III, subunit gamma and tau [Bacteroides fragilis
CL03T00C08]
gi|392654796|gb|EIY48443.1| DNA polymerase III, subunit gamma and tau [Bacteroides fragilis
CL03T12C07]
Length = 614
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 178/352 (50%), Gaps = 8/352 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
KY P TF +VGQ + L NA+ +K+ Y+F GP G GKT+CARIFA+ +NC +L
Sbjct: 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLT 69
Query: 474 QP-KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ C C SC++ + +S NI E+ N + I L++ + +Y++++ D+
Sbjct: 70 ADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDE 129
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ PR +FIL ++ + I+SRCQ + F ++ D + L
Sbjct: 130 VHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVDDTVNHL 189
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDE 651
++ASKEGI + +AL +IA ++DG +RDA +Q +S G I+ V E + ++ E
Sbjct: 190 TYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNVLDYE 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR-- 709
L D L + + ++ G + ++ L++ D+L T
Sbjct: 250 YYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAATLQLLEVG 309
Query: 710 ---RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R+ ++ Q K + L +A+K ++ + R S +K + L+Q+A
Sbjct: 310 AGIRQRYQEQA-QKCALPFLYRAMKLCNDCDMNYRASKNKRLLVELTLIQVA 360
>gi|298376006|ref|ZP_06985962.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 3_1_19]
gi|298267043|gb|EFI08700.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 3_1_19]
Length = 586
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 155/288 (53%), Gaps = 2/288 (0%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC-QS 471
+KY P TFR +VGQ + L NA+ K+ Y+F GP G GKTSCARIFA+ +NC
Sbjct: 9 RKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKTINCLNP 68
Query: 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
+ C C SC + + +S NI E+ N + I L+D + P +Y++F+ D
Sbjct: 69 TADGEACNACESCRAFNEQRSYNIHELDAASNNSVDDIRTLIDQVRIPPPIGKYKVFIID 128
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+ L+ +++A K ++ P +FIL ++ + I+SRCQ + F ++ AD++
Sbjct: 129 EVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYDFSRISIADMVEH 188
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISD 650
LQ+++S+EG+ + +AL +IA ++DG +RDA +Q +S I+ V + + ++
Sbjct: 189 LQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFTNGNITYQAVIDNLNVLDY 248
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA 698
E L D LS + ++ L I+ G + +++ LA D+L
Sbjct: 249 EYYFRLTDAILSGNVRASLLILNEILGKGFDGQNIITGLAGHFRDLLV 296
>gi|212704319|ref|ZP_03312447.1| hypothetical protein DESPIG_02374 [Desulfovibrio piger ATCC 29098]
gi|212672281|gb|EEB32764.1| DNA polymerase III, subunit gamma and tau [Desulfovibrio piger ATCC
29098]
Length = 670
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 155/292 (53%), Gaps = 1/292 (0%)
Query: 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466
+H +L KY P+TF + GQ++V LS A +V Y+ G G GKT+ ARIFA+A
Sbjct: 2 KHLSLAAKYRPQTFAQVAGQDMVKAVLSRAAAEDRVAAAYLLSGTRGVGKTTIARIFAKA 61
Query: 467 LNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYR 526
LNC+ P+PC C+ C +G ++ E+ N E L +N+ + +Y+
Sbjct: 62 LNCRHAPGPEPCNQCDQCRKITQGSHVDVTEIDGASNNSVEDARALRENIGYAPMEGRYK 121
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+F+ D+ LS +++A+ K ++ P RVVFI ++ P I+SRCQ F F + +
Sbjct: 122 VFIIDEAHMLSRSAFNALLKTLEEPPARVVFIFATTEAHKFPITIVSRCQHFVFRHLGED 181
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELV 645
++ L + +KE + ++ A++LIA R+ GS+RD+ L+Q L+L G ++ + +E++
Sbjct: 182 ALVQHLSQVLNKENVPFEEGAVRLIARRAAGSVRDSMSLLDQTLALGGDNLTSAVTREVL 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
GL E DL D + D + + GV+ + +LA + D+
Sbjct: 242 GLAGQELSADLFDALHARDCAAVSQLCAGLFRQGVDIGFFVRELAGHLRDLF 293
>gi|423261023|ref|ZP_17241925.1| DNA polymerase III, subunit gamma and tau [Bacteroides fragilis
CL07T00C01]
gi|423267157|ref|ZP_17246139.1| DNA polymerase III, subunit gamma and tau [Bacteroides fragilis
CL07T12C05]
gi|387774784|gb|EIK36894.1| DNA polymerase III, subunit gamma and tau [Bacteroides fragilis
CL07T00C01]
gi|392697860|gb|EIY91043.1| DNA polymerase III, subunit gamma and tau [Bacteroides fragilis
CL07T12C05]
Length = 614
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 178/352 (50%), Gaps = 8/352 (2%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
KY P TF +VGQ + L NA+ +K+ Y+F GP G GKT+CARIFA+ +NC +L
Sbjct: 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLT 69
Query: 474 QP-KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ C C SC++ + +S NI E+ N + I L++ + +Y++++ D+
Sbjct: 70 ADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDE 129
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ PR +FIL ++ + I+SRCQ + F ++ D + L
Sbjct: 130 VHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVDDTVNHL 189
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDE 651
++ASKEGI + +AL +IA ++DG +RDA +Q +S G I+ V E + ++ E
Sbjct: 190 TYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNVLDYE 249
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR-- 709
L D L + + ++ G + ++ L++ D+L T
Sbjct: 250 YYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAATLQLLEVG 309
Query: 710 ---RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
R+ ++ Q K + L +A+K ++ + R S +K + L+Q+A
Sbjct: 310 AGIRQRYQEQA-QKCALPFLYRAMKLCNDCDMNYRASKNKRLLVELTLIQVA 360
>gi|402570652|ref|YP_006619995.1| DNA polymerase III subunits gamma and tau [Desulfosporosinus
meridiei DSM 13257]
gi|402251849|gb|AFQ42124.1| DNA polymerase III, subunit gamma/tau [Desulfosporosinus meridiei
DSM 13257]
Length = 554
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 163/287 (56%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +++ P+ FRD+VGQ +++ L NA+ + K+ Y+F GP GTGKT+ A+I A+ALNC+
Sbjct: 6 LYREWRPKLFRDIVGQEHISKTLLNALKQDKIAHAYLFSGPRGTGKTTAAKILAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ +PC C+SCIS D+G + + E+ N I DL +N+ S ++++++
Sbjct: 66 QRDGQEPCNKCSSCISIDQGLAMEVFEIDAASNRGINEIRDLRENIKLSSIQGKHKVYII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P +VVFIL ++ + +P I+SR Q+F F ++ I
Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPPKVVFILATTEVQKIPLTILSRVQRFEFHRISIEGIQK 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
L + + E++ +AL +IA +S+G LRDA L+Q L I V V ++G++ +
Sbjct: 186 RLTEVCTFLKREVNPNALVVIAQKSEGGLRDALSILDQCLLQEGSIGVEEVYLVLGMVGE 245
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
L+D S D + L ++ G +P ++ +L + +L
Sbjct: 246 TYSSKLVDELASDDYAKCINFLSDGIQQGRDPRQIIRELLDYLRQML 292
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,430,513,848
Number of Sequences: 23463169
Number of extensions: 735521604
Number of successful extensions: 2204039
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6436
Number of HSP's successfully gapped in prelim test: 3122
Number of HSP's that attempted gapping in prelim test: 2188205
Number of HSP's gapped (non-prelim): 11786
length of query: 1152
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 998
effective length of database: 8,745,867,341
effective search space: 8728375606318
effective search space used: 8728375606318
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 83 (36.6 bits)