BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036794
(1152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 138/246 (56%), Gaps = 1/246 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+TF D+VGQ V AL+N + ++ Y+F G G GKTS AR+ A+ L
Sbjct: 25 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 84
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ PCG C++C ++G+ ++ E+ E DLLDN+ + ++++
Sbjct: 85 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 144
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V F+L ++ LP I+SRC +F +
Sbjct: 145 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 204
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I + L+ I ++E I + AL+L+A ++GSLRDA +Q G ++S V ++G
Sbjct: 205 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 264
Query: 647 LISDEK 652
+ D++
Sbjct: 265 TLDDDQ 270
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 138/246 (56%), Gaps = 1/246 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+TF D+VGQ V AL+N + ++ Y+F G G GKTS AR+ A+ L
Sbjct: 6 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 65
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ PCG C++C ++G+ ++ E+ E DLLDN+ + ++++
Sbjct: 66 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 125
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V F+L ++ LP I+SRC +F +
Sbjct: 126 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 185
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I + L+ I ++E I + AL+L+A ++GSLRDA +Q G ++S V ++G
Sbjct: 186 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 245
Query: 647 LISDEK 652
+ D++
Sbjct: 246 TLDDDQ 251
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 138/246 (56%), Gaps = 1/246 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+TF D+VGQ V AL+N + ++ Y+F G G GKTS AR+ A+ L
Sbjct: 25 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 84
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ PCG C++C ++G+ ++ E+ E DLLDN+ + ++++
Sbjct: 85 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 144
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V F+L ++ LP I+SRC +F +
Sbjct: 145 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATADPQKLPVTILSRCLQFHLKALDVEQ 204
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I + L+ I ++E I + AL+L+A ++GSLRDA +Q G ++S V ++G
Sbjct: 205 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 264
Query: 647 LISDEK 652
+ D++
Sbjct: 265 TLDDDQ 270
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 130/230 (56%), Gaps = 6/230 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+TF D+VGQ V AL+N + ++ Y+F G G GKTS AR+ A+ L
Sbjct: 10 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ PCG C++C ++G+ ++ E+ E DLLDN+ + ++++
Sbjct: 70 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 129
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V F+L ++ LP I+SRC +F +
Sbjct: 130 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 189
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRIS 637
I + L+ I ++E I + AL+L+A ++GSLRDA LSL Q I+
Sbjct: 190 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDA------LSLTDQAIA 233
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 138/246 (56%), Gaps = 1/246 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+TF D+VGQ V AL+N + ++ Y+F G G GKTS AR+ A+ L
Sbjct: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ PCG C++C ++G+ ++ E+ E DLLDN+ + ++++
Sbjct: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V F+L ++ LP I+SRC +F +
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I + L+ I ++E I + AL+L+A ++GSLRDA +Q G ++S V ++G
Sbjct: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242
Query: 647 LISDEK 652
+ D++
Sbjct: 243 TLDDDQ 248
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 138/246 (56%), Gaps = 1/246 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+TF D+VGQ V AL+N + ++ Y+F G G GKTS AR+ A+ L
Sbjct: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ PCG C++C ++G+ ++ E+ E DLLDN+ + ++++
Sbjct: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V F+L ++ LP I+SRC +F +
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I + L+ I ++E I + AL+L+A ++GSLRDA +Q G ++S V ++G
Sbjct: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242
Query: 647 LISDEK 652
+ D++
Sbjct: 243 TLDDDQ 248
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 105/234 (44%), Gaps = 34/234 (14%)
Query: 412 TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLL--YVFYGPHGTGKTSCARIFARALNC 469
+KY P+ D+VGQ + + L + V K G + +F GP G GKT+ A AR L
Sbjct: 16 VEKYRPQRLDDIVGQEHIVKRLKHYV---KTGSMPHLLFAGPPGVGKTTAALALARELFG 72
Query: 470 QSLEQPKPCGFCNSCISHDRG------KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS 523
++ F S +RG K + P+G +
Sbjct: 73 ENWRH----NFLELNASDERGINVIREKVKEFARTKPIGG-------------------A 109
Query: 524 QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKM 583
++I D+ D L+ D+ A+ + ++ V FIL + + I SRC F F +
Sbjct: 110 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPL 169
Query: 584 KDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRIS 637
+D DI L++IA EG+E+ ++ L+ I ++G +R A L+ + L ++I+
Sbjct: 170 RDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKIT 223
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 62/240 (25%), Positives = 105/240 (43%), Gaps = 30/240 (12%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY PRT ++VGQ+ V Q L V R+ + L +F GP GTGKT+ A AR L ++
Sbjct: 9 EKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHL-LFSGPPGTGKTATAIALARDLFGENW 67
Query: 473 EQPKPCGFCNSCISHDRG------KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYR 526
F S +RG K + P+G + ++
Sbjct: 68 RD----NFIEMNASDERGIDVVRHKIKEFARTAPIGG-------------------APFK 104
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
I D+ D L+ D+ +A+ + ++ + FIL + + + I SRC F F +
Sbjct: 105 IIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKE 164
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVG 646
+ L I KEG++I +D L+ + S G R A L+ + +G+ + + ++
Sbjct: 165 AMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITA 224
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 105/241 (43%), Gaps = 30/241 (12%)
Query: 412 TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS 471
+KY PRT ++VGQ+ V Q L V R+ + L +F GP GTGKT+ A AR L ++
Sbjct: 8 VEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHL-LFSGPPGTGKTATAIALARDLFGEN 66
Query: 472 LEQPKPCGFCNSCISHDRG------KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
F S +RG K + P+G + +
Sbjct: 67 WRD----NFIEMNASDERGIDVVRHKIKEFARTAPIGG-------------------APF 103
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+I D+ D L+ D+ +A+ + ++ + FIL + + + I SRC F F +
Sbjct: 104 KIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPK 163
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L I KEG++I +D L+ + S G R A L+ + +G+ + + ++
Sbjct: 164 EAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQIT 223
Query: 646 G 646
Sbjct: 224 A 224
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 114/247 (46%), Gaps = 13/247 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
Q +KY P+ ++ Q+ L + + + +FYGP GTGKTS + L
Sbjct: 24 QQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHM-LFYGPPGTGKTSTILALTKEL 82
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
L + + S +RG S ++E V NF ++ + + + P Y+I
Sbjct: 83 YGPDLMKSR---ILELNASDERGISI-VRE--KVKNFARLTVSKPSKHDLENYPCPPYKI 136
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
+ D+ D+++ D+ SA+ + ++ F L+ + + + + S+C KF F + ++
Sbjct: 137 IILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASN 196
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLS----LL--GQRISVPLV 641
I L++I+ +E ++ D L+ I S G LR L+ S L G+ I+ V
Sbjct: 197 AIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQV 256
Query: 642 QELVGLI 648
+EL G++
Sbjct: 257 EELAGVV 263
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 93/209 (44%), Gaps = 18/209 (8%)
Query: 412 TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS 471
+KY P T ++ GQN V + V K+ L +FYGP GTGKTS AR + ++
Sbjct: 16 VEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHL-LFYGPPGTGKTSTIVALAREIYGKN 74
Query: 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
+ N + + R I V DF S + +++ + D
Sbjct: 75 --------YSNMVLELNASDDRGIDVVRNQIK-DFASTRQIFS--------KGFKLIILD 117
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+ D ++ + +A+ +V++R + F ++++ L ++S+C +F F + I
Sbjct: 118 EADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERR 177
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLR 620
+ + E +++ +A K + S+G +R
Sbjct: 178 IANVLVHEKLKLSPNAEKALIELSNGDMR 206
>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 83/218 (38%), Gaps = 31/218 (14%)
Query: 412 TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS 471
+KY P+ D+VG L + + + G G GKT+ A L
Sbjct: 12 VEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHM-IISGMPGIGKTTSVHCLAHEL---- 66
Query: 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV-------TSRPPSQ 524
L + G S DRG +D++ N + PP +
Sbjct: 67 LGRSYADGVLELNASDDRG-------------------IDVVRNQIKHFAQKKLHLPPGK 107
Query: 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMK 584
++I + D+ D+++ + A+ + ++ F + + + + S+C + K+
Sbjct: 108 HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLS 167
Query: 585 DADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA 622
D D++ L I E ++ D L+ I ++G +R A
Sbjct: 168 DEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQA 205
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 423 LVGQNLVAQALSNAVMRRKVGLL--------YVFYGPHGTGKTSCARIFARALNCQSLEQ 474
+VGQ+ +A+++A+ R + GL ++F GP G GKT A+ A L + E
Sbjct: 560 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL-FDTEEA 618
Query: 475 PKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCD 534
H SR I P G +E L + V RP Y + +FD+ +
Sbjct: 619 MIRIDMTEYMEKH--AVSRLIG--APPGYVGYEEGGQLTEA-VRRRP---YSVILFDEIE 670
Query: 535 TLSPDSWSAISKVVD 549
PD ++ + +++D
Sbjct: 671 KAHPDVFNILLQILD 685
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 20/135 (14%)
Query: 423 LVGQNLVAQALSNAVMRRKVGL--------LYVFYGPHGTGKTSCARIFARALNCQSLEQ 474
+ GQ+ +AL+ A+ + GL ++F GP G GKT ++AL + L
Sbjct: 460 VFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR- 518
Query: 475 PKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCD 534
F S SR I P G F+ LL + V P + + + D+ +
Sbjct: 519 -----FDMSEYMERHTVSRLIG--APPGYVGFDQ-GGLLTDAVIKHP---HAVLLLDEIE 567
Query: 535 TLSPDSWSAISKVVD 549
PD ++ + +V+D
Sbjct: 568 KAHPDVFNILLQVMD 582
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 33.9 bits (76), Expect = 0.51, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 421 RDLVGQNLVAQALSNAVMRRKVGLL--------YVFYGPHGTGKTSCARIFARAL 467
+ +VGQ+ +A+++A+ R + GL ++F GP G GKT A+ A L
Sbjct: 14 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 68
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 421 RDLVGQNLVAQALSNAVMRRKVGLL--------YVFYGPHGTGKTSCARIFARAL 467
+ +VGQ+ +A+++A+ R + GL ++F GP G GKT A+ A L
Sbjct: 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 90/234 (38%), Gaps = 36/234 (15%)
Query: 405 NGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFA 464
N + L QKY P T + + + + + K+ + + GTGKT+ A+
Sbjct: 10 NEKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALC 69
Query: 465 RALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV-GPVGNFDFESILDLLDNMVTSRPPS 523
+N + F N G I V GP+ NF + D
Sbjct: 70 HDVNADMM-------FVN-------GSDCKIDFVRGPLTNFASAASFD-----------G 104
Query: 524 QYRIFVFDDCD-TLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPK 582
+ ++ V D+ D + +S + ++ I+ ++++D + + SRC+ F +
Sbjct: 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQ 164
Query: 583 MKDAD-------IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL 629
D D +I L I EGI I +K++A+ + D T+ +L
Sbjct: 165 PTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIGEL 216
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 402 DNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLY--VFYGPHGTGKTSC 459
D + Q L + P +GQ + A + G L+ + +GP GTGKT+
Sbjct: 7 DFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTL 66
Query: 460 ARIFARALNC 469
A + AR N
Sbjct: 67 AEVIARYANA 76
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQ 474
+ YGP G GKT+ A + A+ L LEQ
Sbjct: 81 MLYGPPGIGKTTAAHLVAQELGYDILEQ 108
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 446 YVFYGPHGTGKTSCARIFARAL 467
++F GP G GKT AR A ++
Sbjct: 524 FIFLGPTGVGKTELARALAESI 545
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 30.0 bits (66), Expect = 7.1, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 417 PRTFRDLVGQNLVAQALS---NAVMRRKVGLLYVF-YGPHGTGKTSCARIFARAL 467
P+T + +GQ + Q L A RK L ++ +GP G GKT+ A + A L
Sbjct: 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 30.0 bits (66), Expect = 7.1, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 417 PRTFRDLVGQNLVAQALS---NAVMRRKVGLLYVF-YGPHGTGKTSCARIFARAL 467
P+T + +GQ + Q L A RK L ++ +GP G GKT+ A + A L
Sbjct: 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 30.0 bits (66), Expect = 8.5, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 417 PRTFRDLVGQNLVAQALS---NAVMRRKVGLLYVF-YGPHGTGKTSCARIFARAL 467
P+T + +GQ + Q L A RK L ++ +GP G GKT+ A + A L
Sbjct: 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,038,941
Number of Sequences: 62578
Number of extensions: 1143028
Number of successful extensions: 2750
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2725
Number of HSP's gapped (non-prelim): 34
length of query: 1152
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1043
effective length of database: 8,152,335
effective search space: 8502885405
effective search space used: 8502885405
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)