BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036794
(1152 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q89A95|DPO3X_BUCBP DNA polymerase III subunit gamma OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=dnaX PE=3 SV=1
Length = 370
Score = 163 bits (413), Expect = 6e-39, Method: Composition-based stats.
Identities = 89/286 (31%), Positives = 166/286 (58%), Gaps = 8/286 (2%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P+TF D++GQ + A+SN+++ ++ ++F+G GTGKT+ ARI A++LNC+
Sbjct: 6 LAKKWRPQTFNDVIGQQYIVSAISNSLLLGRIHHAWLFFGIRGTGKTTIARILAKSLNCK 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
P PC C++C+ ++G ++ EV E + +LLDN+ +++I++
Sbjct: 66 LGISPNPCRKCSNCVEVEQGNFIDLYEVDAASRTKVEDMKELLDNIRYLPSKGRFKIYLI 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS S++ + K ++ P+ + FIL +++L+ +P I+SRC +F + +I+
Sbjct: 126 DEVHMLSRYSFNFLLKNIEEPPQHIKFILATTNLEKIPDTILSRCLQFQLKPINLNEIVA 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
+ I KE I + AL LI+ +S+GSLRDA EQ+ +G+ I+ +V++ +G++
Sbjct: 186 CISNILHKENITYEIKALSLISQKSEGSLRDAITLTEQMISMGKGNITEKIVRKTLGMLY 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETG-------VEPLALMSQ 688
+++++ +L L+ D N V + I +T VE L L+ Q
Sbjct: 246 EDQILYILTTLLNKDLKNLVLCFKYISDTHINFENILVEILQLLHQ 291
>sp|P09122|DPO3X_BACSU DNA polymerase III subunit gamma/tau OS=Bacillus subtilis (strain
168) GN=dnaX PE=3 SV=3
Length = 563
Score = 159 bits (403), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 156/291 (53%), Gaps = 1/291 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ + + L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C G ++ E+ N + I D+ D + + Y++
Sbjct: 63 NCEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P +FIL ++ +P IISRCQ+F F ++
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I E +++++ +L++IAS +DG +RDA L+Q +S G + V + G
Sbjct: 183 IVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+S + L + + ++ L +++ G +P L+ + D+L
Sbjct: 243 AVSQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDML 293
>sp|P74876|DPO3X_SALTY DNA polymerase III subunit tau OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dnaX PE=3 SV=2
Length = 642
Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 159/290 (54%), Gaps = 1/290 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+TF D+VGQ V AL+N + ++ Y+F G G GKTS AR+ A+ L
Sbjct: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ PCG C++C ++G+ ++ E+ E DLLDN+ + ++++
Sbjct: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V F+L ++ LP I+SRC +F +
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I + L+ I ++E I + AL+L++ +DGSLRDA +Q G ++S V ++G
Sbjct: 183 IRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDI 696
+ D++ + L++ + A+ + + G+E AL+ ++ +++ I
Sbjct: 243 TLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRI 292
>sp|P06710|DPO3X_ECOLI DNA polymerase III subunit tau OS=Escherichia coli (strain K12)
GN=dnaX PE=1 SV=1
Length = 643
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 155/283 (54%), Gaps = 1/283 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+TF D+VGQ V AL+N + ++ Y+F G G GKTS AR+ A+ L
Sbjct: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ PCG C++C ++G+ ++ E+ E DLLDN+ + ++++
Sbjct: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V F+L ++ LP I+SRC +F +
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I + L+ I ++E I + AL+L+A ++GSLRDA +Q G ++S V ++G
Sbjct: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689
+ D++ + L++ + A+ + + G+E AL+ ++
Sbjct: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285
>sp|P57553|DPO3X_BUCAI DNA polymerase III subunit gamma OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=dnaX PE=3 SV=1
Length = 361
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 151/275 (54%), Gaps = 1/275 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+ FRD++GQ + A+SN + ++ ++ G G GKT+ AR+ A++L
Sbjct: 3 YQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGIGKTTIARLLAKSL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NCQ+ PC C C ++G ++ E+ E + ++LD++ S S++++
Sbjct: 63 NCQNGITSDPCRQCIICKEIEKGLCLDVIEIDGASRTKVEEMREILDSIYYSPIKSRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V F+L ++ +D +P IISRC F + +
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFVLATTDVDRIPKTIISRCLYFKLQIISEEK 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I L++I KE I+ D+ +LK IA + GS+RDA LE LG +++ V +++G
Sbjct: 183 IFKFLKYILIKESIDTDEYSLKKIAYHAHGSIRDALNLLEHAINLGNGHVNIKNVTDMLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVE 681
L+ ++ L D L D+ T+ L I GVE
Sbjct: 243 LLPEKYSFLLTDAVLKKDSKKTMLLLNKISSIGVE 277
>sp|P43746|DPO3X_HAEIN DNA polymerase III subunit tau/gamma OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dnaX PE=3
SV=1
Length = 688
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 136/251 (54%), Gaps = 1/251 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+TF D+VGQ + AL+N + ++ Y+F G G GKTS AR+FA+ L
Sbjct: 3 YQVLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC PCG C +C + ++G ++ E+ E +LLDN+ ++++
Sbjct: 63 NCVHGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V F+L ++ LP I+SRC +F + +
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKALDETQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-ISVPLVQELVG 646
I L I ++E I + AL +A + GS+RD+ +Q +G R ++ +V ++G
Sbjct: 183 ISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGDRQVTNNVVSNMLG 242
Query: 647 LISDEKLVDLL 657
L+ D VD+L
Sbjct: 243 LLDDNYSVDIL 253
>sp|P75177|DPO3X_MYCPN DNA polymerase III subunit gamma/tau OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=dnaX PE=3 SV=1
Length = 681
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 150/288 (52%), Gaps = 3/288 (1%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L QKY P F D VGQ+ + + + NA+ + ++ Y+F G GTGKT+ A+I A+A+NC
Sbjct: 5 LYQKYRPTKFSDTVGQDSIKRIIVNAITQDQLPHGYIFAGERGTGKTTFAKIIAKAINCL 64
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ C C +C + + + ++ E+ I +L +N+ + ++++
Sbjct: 65 NWNG-DVCNQCEACQAINSNSAIDVFEIDAASKNGINDIRELAENVFNLPFKFKKKVYIL 123
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+P SWS + K ++ AP V+FI ++ + +P I+SRCQ FFF ++ + I
Sbjct: 124 DEAHMLTPQSWSGLLKTLEEAPDYVLFIFATTEFNKIPITILSRCQSFFFKQITNDLIQQ 183
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELVGLI 648
L +A+KE I+I DAL +A + GSLRD L+Q+S + IS+ V++ L+
Sbjct: 184 RLAEVAAKESIKITTDALVKLADLAQGSLRDGLSLLDQISNFSESKTISLADVEKTFNLL 243
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDI 696
E+ ++ LS D + + G+ + + +L + D+
Sbjct: 244 DKEQKFGFIEAVLSGDLKQSFHLIDNFESQGINFVHFLRELFALTVDL 291
>sp|P47658|DPO3X_MYCGE DNA polymerase III subunit gamma/tau OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=dnaX PE=3
SV=3
Length = 597
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 149/293 (50%), Gaps = 2/293 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
HQ QKY P F+ +GQ + + L NA+ R K+ Y+F G GTGKT+ A+I A+A+
Sbjct: 2 HQVFYQKYRPINFKQTLGQESIRKILVNAINRDKLPNGYIFSGERGTGKTTFAKIIAKAI 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +Q C C+ C S + + +I E+ I +L++N+ + ++
Sbjct: 62 NCLNWDQIDVCNSCDVCKSINTNSAIDIVEIDAASKNGINDIRELVENVFNHPFTFKKKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ SW + K ++ +P V+FI ++ + +P I+SRCQ FFF K+
Sbjct: 122 YILDEAHMLTTQSWGGLLKTLEESPPYVLFIFTTTEFNKIPLTILSRCQSFFFKKITSDL 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRISVPLVQELV 645
I+ L IA KE I+I+KDAL IA S GSLRD L+Q+S ++IS+ V++
Sbjct: 182 ILERLNDIAKKEKIKIEKDALIKIADLSQGSLRDGLSLLDQISNFSDSEKISITDVEKTF 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA 698
++ + LS D L G+ + +L + ++ A
Sbjct: 242 NIVDRNAKFTFIKAVLSGDIKEAFNLLDDFESNGLNFTYFLRELFALTVNLYA 294
>sp|Q8K983|DPO3X_BUCAP DNA polymerase III subunit gamma OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=dnaX PE=3 SV=1
Length = 363
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 79/275 (28%), Positives = 147/275 (53%), Gaps = 1/275 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P++F+ ++GQ + +A+SN K+ ++ G G GKT+ AR+ A++L
Sbjct: 3 YQILARKWRPQSFKKIIGQKYIVKAISNGFSLGKIHHAWLLSGTRGVGKTTIARLIAKSL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ PC C C ++G + E+ E I ++LDN+ + S++++
Sbjct: 63 NCEIGITSLPCRKCTICQEIEKGICLDFIEIDAASRTKVEEIREILDNIYYTPSKSRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P+ + FIL ++ ++ +P I SRC F + + D
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIRSRCLHFKLNILSEED 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I L+ I K G D++ALK+I+ ++GS+RDA LE + L I++ E++G
Sbjct: 183 IFNFLKHILKKGGNNFDEEALKIISDYANGSMRDALNLLEHAMHLSKNNINLKNTTEMLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVE 681
+ + + L L D+ + L I + G+E
Sbjct: 243 IPNKKHAFLLTKFLLEQDSKKMMCLLNKISKIGLE 277
>sp|P63975|DPO3X_MYCTU DNA polymerase III subunit gamma/tau OS=Mycobacterium tuberculosis
GN=dnaX PE=3 SV=1
Length = 578
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 111/221 (50%), Gaps = 2/221 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P +F ++VGQ V LS A+ ++ Y+F GP G GKTS ARI AR+LNC
Sbjct: 3 LYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62
Query: 471 SLEQPKPCGFCNSCIS--HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
PCG C SC+S + S ++ E+ + + +L D + S+YR+F
Sbjct: 63 QGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYRVF 122
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ ++ ++A+ K+V+ P ++FI ++ + + I SR + F + +
Sbjct: 123 IVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTM 182
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL 629
L I +EG+ +D L+ GS RD L+QL
Sbjct: 183 RALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL 223
>sp|P63976|DPO3X_MYCBO DNA polymerase III subunit gamma/tau OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=dnaX PE=3 SV=1
Length = 578
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 111/221 (50%), Gaps = 2/221 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P +F ++VGQ V LS A+ ++ Y+F GP G GKTS ARI AR+LNC
Sbjct: 3 LYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62
Query: 471 SLEQPKPCGFCNSCIS--HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
PCG C SC+S + S ++ E+ + + +L D + S+YR+F
Sbjct: 63 QGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYRVF 122
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ ++ ++A+ K+V+ P ++FI ++ + + I SR + F + +
Sbjct: 123 IVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTM 182
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL 629
L I +EG+ +D L+ GS RD L+QL
Sbjct: 183 RALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL 223
>sp|Q5UZE5|RFCS_HALMA Replication factor C small subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rfcS PE=3 SV=2
Length = 325
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 132/290 (45%), Gaps = 22/290 (7%)
Query: 402 DNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCAR 461
++R GR + +KY P+T D++G + L + V R + + +F GP GTGKT+CA
Sbjct: 7 ESRAGREEVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHM-LFSGPAGTGKTTCAT 65
Query: 462 IFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV-TSR 520
AR L + F S +RG + + D + N TS
Sbjct: 66 AIARELYGDDWREH----FLELNASDERG---------------IDVVRDRIKNFARTSF 106
Query: 521 PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFF 580
+YRI D+ D L+ D+ SA+ + +++ V FIL + + I SRC F F
Sbjct: 107 GGVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRF 166
Query: 581 PKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPL 640
+ D + ++ IA++E IE+ +D L + +DG +R A L+ S+ G +
Sbjct: 167 SPLADDAVAEEIRTIAAEEDIELTEDGLDALVYAADGDMRKAINGLQAASVSGDTVDESA 226
Query: 641 VQELVGLISDEKLVDLLDLALSADTVNTVKNL-RVIMETGVEPLALMSQL 689
V + E++ ++ AL D + L R++ E G+ ++ QL
Sbjct: 227 VYAITSTARPEEIRTMVQSALDGDFTASRATLDRLLTEEGIAGGDIIDQL 276
>sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1
Length = 329
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 130/265 (49%), Gaps = 19/265 (7%)
Query: 412 TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS 471
+KY P+T ++V Q + L V R + L +F GP GTGKT+ A A L ++
Sbjct: 14 AEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHL-LFAGPPGTGKTTAAHCLAHDLFGEN 72
Query: 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
Q + + R I + + + V + P ++I + D
Sbjct: 73 YRQ--------YMLELNASDERGIDVIRS-------KVKEFARTRVAANIP--FKIVLLD 115
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+ D ++ D+ A+ ++++ FIL+++ + I SRC F F +K D+I
Sbjct: 116 EADNMTADAQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISR 175
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDE 651
L+WIA +E +EID++AL+ I S+G +R A L+ + LG +++V V ++VGL
Sbjct: 176 LKWIAEQEKVEIDEEALEAIHDLSEGDMRRAINILQAAAALG-KVTVDSVYKVVGLAHPR 234
Query: 652 KLVDLLDLALSADTVNTVKNLRVIM 676
++ ++ LAL+ + + + LR +M
Sbjct: 235 EIRQMIQLALAGNFNDAREKLRELM 259
>sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcS PE=3 SV=3
Length = 325
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 126/267 (47%), Gaps = 23/267 (8%)
Query: 412 TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS 471
+KY PR+ D+V Q V + L V +R + L +F GP GTGKT+ A A L ++
Sbjct: 10 VEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHL-LFAGPPGTGKTTAAHALAHDLFGEN 68
Query: 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ--YRIFV 529
Q S +RG I + + SR P + ++I +
Sbjct: 69 YRQ----YMLELNASDERG---------------INVIREKVKEFARSRTPPEIPFKIVL 109
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ D ++ D+ A+ ++++ FIL+++ + I SRC F F + D+I
Sbjct: 110 LDEADNMTSDAQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVI 169
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLIS 649
L++IA EG++ +++AL I S+G +R A L+ S LG +++V V +VG+
Sbjct: 170 ERLRYIAENEGVDYEEEALDAIYEISEGDMRKAINVLQAASYLG-KVTVDAVYRVVGMAK 228
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIM 676
++ ++L AL D LR IM
Sbjct: 229 PREVREMLATALKGDFTAARSLLRKIM 255
>sp|A1RSA2|RFCS1_PYRIL Replication factor C small subunit 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 94.0 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 72/271 (26%), Positives = 124/271 (45%), Gaps = 32/271 (11%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL----- 467
+KY PR+F ++V V L V + L +FYGP GTGKT+ A + AR L
Sbjct: 8 EKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHL-LFYGPPGTGKTTMALVLARELYGEYW 66
Query: 468 --NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
N L G I+ R + + PVG + +
Sbjct: 67 RENTLELNASDERG-----INVIRERVKEFARTAPVGK-------------------APF 102
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++ + D+ D ++ D+ A+ ++++ + FIL+++ + + IISRC F F M
Sbjct: 103 KLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPR 162
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L++IA EG+E+ +DA+ LI S+G +R A L+ + + + +V
Sbjct: 163 HLMAERLKYIAKSEGVEVKEDAIDLIYELSEGDMRKAINILQVAAATNKIVDRNVVAAAA 222
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIM 676
I +V+L +LALS D + + +R +M
Sbjct: 223 AAIRPTDIVELFNLALSGDYLKAREKMRELM 253
>sp|A1RWU7|RFCS_THEPD Replication factor C small subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcS PE=3 SV=1
Length = 325
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 123/272 (45%), Gaps = 32/272 (11%)
Query: 412 TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL---- 467
+KY PR+ ++V Q + + L V + + L +F GP GTGKT+ A A L
Sbjct: 7 VEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHL-LFAGPPGTGKTTAALALAHDLYGES 65
Query: 468 ---NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ 524
N L G I R + ++ P+G+ F
Sbjct: 66 WRDNTLELNASDERG-----IDVIRSRIKDYARTLPIGDVPF------------------ 102
Query: 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMK 584
++ + D+ D ++ D+ A+ + ++ R FIL+++ + I SRC F F +
Sbjct: 103 -KLVILDEADNMTGDAQQALRRTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLP 161
Query: 585 DADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQEL 644
D L+WIA +EGI +D AL+ I S G LR A TL+ S + + ++ +V
Sbjct: 162 KGDAFQRLRWIAQQEGITVDDGALEAIWEESQGDLRKAINTLQAASAISRNVTEEVVYAA 221
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIM 676
+G + +++ ++++ AL + + LR+++
Sbjct: 222 LGRVKPKEVREMIESALKGNLLEARDKLRLLL 253
>sp|Q8ZYK4|RFCS1_PYRAE Replication factor C small subunit 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 90.5 bits (223), Expect = 6e-17, Method: Composition-based stats.
Identities = 70/271 (25%), Positives = 124/271 (45%), Gaps = 32/271 (11%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL----- 467
+KY PR+F ++V V L V + L +FYGP GTGKT+ A + AR L
Sbjct: 8 EKYRPRSFDEVVDLEEVKARLREFVKAGNMPHL-LFYGPPGTGKTTMALVLARELYGEYW 66
Query: 468 --NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
N L G I+ R + + PVG + +
Sbjct: 67 RENTLELNASDERG-----INVIRERVKEFARTAPVGK-------------------APF 102
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++ + D+ D ++ D+ A+ ++++ + FIL+++ + + IISRC F F M
Sbjct: 103 KLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPR 162
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ + L++IA EG+E+ +DA+ +I S+G +R A L+ + + + V
Sbjct: 163 SLMAERLKFIAKNEGVELREDAINMIYELSEGDMRKAINLLQVAAATNKVVDANAVASAA 222
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIM 676
+ +++L +LA+S D V + LR +M
Sbjct: 223 IAVRPADIIELFNLAISGDFVKAREKLRELM 253
>sp|A4WGV2|RFCS1_PYRAR Replication factor C small subunit 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 72/271 (26%), Positives = 121/271 (44%), Gaps = 32/271 (11%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL----- 467
+KY PR+F ++V V L V + L +FYGP GTGKT+ A + AR L
Sbjct: 8 EKYRPRSFDEVVDLEEVKARLREFVRGGNMPHL-LFYGPPGTGKTTMALVLARELYGEYW 66
Query: 468 --NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
N L G I+ R + + PVG + +
Sbjct: 67 RENTLELNASDERG-----INVIRERVKEFARTAPVGK-------------------APF 102
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++ + D+ D ++ D+ A+ ++++ + FIL+++ + + IISRC F F M
Sbjct: 103 KLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPR 162
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ + L+ IA EGIE+ DA+ LI S+G +R A L+ + + + V
Sbjct: 163 SLMAERLRHIAKSEGIELRDDAIDLIYEVSEGDMRKAINLLQVAAATSKVVDANAVASAT 222
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIM 676
+I +V+L +LA + D + LR +M
Sbjct: 223 TMIRPADVVELFNLAFNGDVTKAREKLRELM 253
>sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcS PE=1 SV=1
Length = 319
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 129/285 (45%), Gaps = 31/285 (10%)
Query: 412 TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS 471
+KY PRT ++VGQ+ V Q L V R+ + L +F GP GTGKT+ A AR L ++
Sbjct: 8 VEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHL-LFSGPPGTGKTATAIALARDLFGEN 66
Query: 472 LEQPKPCGFCNSCISHDRG------KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
F S +RG K + P+G + +
Sbjct: 67 WRD----NFIEMNASDERGIDVVRHKIKEFARTAPIGG-------------------APF 103
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+I D+ D L+ D+ +A+ + ++ + FIL + + + I SRC F F +
Sbjct: 104 KIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPK 163
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L I KEG++I +D L+ + S G R A L+ + +G+ + + ++
Sbjct: 164 EAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQIT 223
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNL-RVIMETGVEPLALMSQL 689
E++ +L+ AL + + + L R+++E G+ +++QL
Sbjct: 224 ATARPEEMTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQL 268
>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncultured methanogenic
archaeon RC-I GN=rfcS PE=3 SV=1
Length = 322
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 128/287 (44%), Gaps = 35/287 (12%)
Query: 412 TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLL--YVFYGPHGTGKTSCARIFARALNC 469
T+KY PR D++G + + L + V K G L +F GP G GKT+CA AR L
Sbjct: 8 TEKYRPRRLEDVIGHQQITRRLISYV---KSGNLPHLLFSGPPGVGKTACAVALARELYG 64
Query: 470 QSLEQPKPCGFCNSCISHDRG------KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS 523
++ F S +RG +N P+G +
Sbjct: 65 ETWHS----NFIELNASDERGIDVVRNNIKNFARTAPLGE-------------------A 101
Query: 524 QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKM 583
+++I D+ D L+ D+ SA+ + ++R FI+ + + I SRC + F +
Sbjct: 102 KFKIIFLDEADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPL 161
Query: 584 KDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQE 643
DI + IA EG++I+KD + + + G +R A L+ + + + I+ ++ +
Sbjct: 162 NATDITTGITRIAKNEGLKIEKDGMDALIYVARGDMRRAINALQSAATIAKDITADVIYQ 221
Query: 644 LVGLISDEKLVDLLDLALSADTVNTVKNL-RVIMETGVEPLALMSQL 689
+++ D+L LAL+ +++ L +++ G+ ++ Q+
Sbjct: 222 TTSTAKPKEIEDMLKLALNGQFMDSRNKLDELLITYGLSGTDIIDQI 268
>sp|P53016|RFC4_CAEEL Replication factor C subunit 4 OS=Caenorhabditis elegans GN=rfc-4
PE=1 SV=1
Length = 334
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 110/238 (46%), Gaps = 30/238 (12%)
Query: 402 DNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCAR 461
DN+ + T+KY P+T D+ Q+ V L A+ R + L +FYGP GTGKTS A
Sbjct: 8 DNKRPKVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHL-LFYGPPGTGKTSAAL 66
Query: 462 IFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV---------GPVGNFDFESILDL 512
F R L +++ F + + + R I V +G+ E +L L
Sbjct: 67 AFCRQLFPKNI-------FHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKL 119
Query: 513 LDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIII 572
+I + D+ D ++ ++ +A+ +V++ + FIL+ + + L ++
Sbjct: 120 -------------KIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVV 166
Query: 573 SRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLS 630
SRC KF F + + L+ I EG + D LK + S+G LR A TL+ L+
Sbjct: 167 SRCAKFRFKSLPAEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLA 224
>sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcS PE=3
SV=1
Length = 327
Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 72/270 (26%), Positives = 124/270 (45%), Gaps = 31/270 (11%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY PR+ D+V Q + + L V + + L +F GP GTGKT+ A L +
Sbjct: 11 EKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHL-LFSGPPGTGKTTAALALVHDLYGDNY 69
Query: 473 EQPKPCGFCNSCISHDRGKS--RN-IKEVGPV---GNFDFESILDLLDNMVTSRPPSQYR 526
Q F S +RG RN +KE GN F+ +L
Sbjct: 70 RQY----FLELNASDERGIDVIRNKVKEFARTVAGGNVPFKVVL---------------- 109
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
D+ D ++ D+ A+ + ++ FIL + L + I SR F F +K
Sbjct: 110 ---LDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKE 166
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVG 646
D++ L +IA E +E D+ AL+ I + G +R A L+ S+ G +++V V +++G
Sbjct: 167 DVVARLAYIAKNEKVEYDQKALETIYDITQGDMRKAINILQASSVYG-KVTVEAVYKVLG 225
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIM 676
L +++ +++ LAL + + + LR ++
Sbjct: 226 LAQPKEIREMIMLALQGNFLKAREKLRELL 255
>sp|Q2FQT9|RFCS_METHJ Replication factor C small subunit OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=rfcS PE=3 SV=1
Length = 323
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 131/290 (45%), Gaps = 33/290 (11%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFAR-- 465
H +KY PR D++GQ + + L + V +R++ L +F G GTGKT+ A AR
Sbjct: 5 HAIWIEKYRPRVLEDIIGQQEIIERLRSYVAKREMPHL-LFTGNAGTGKTTAAVALAREF 63
Query: 466 -----ALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR 520
+N + L G I R + + P G
Sbjct: 64 FGEDWQMNFRELNASDERG-----IDVVRNQIKQFARTSPFGG----------------- 101
Query: 521 PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFF 580
S ++I D+ D L+ D+ SA+ + ++ + FIL + + I SRC + F
Sbjct: 102 --STFKILFLDEADALTTDAQSALRRTMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRF 159
Query: 581 PKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPL 640
+ + ++ I++ + + + ++ + I + G +R A L+ ++LG+ IS +
Sbjct: 160 RPLGRQAVSEMVKRISADQNLTVTEEVIDAIFYVAQGDMRKAINALQGAAILGRDISPDM 219
Query: 641 VQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIM-ETGVEPLALMSQL 689
+ + E++ DL+DL+L+ + + +L+ ++ + G+ P L+SQL
Sbjct: 220 IFAITATARPEEIDDLIDLSLAGNFLGAGSSLQALLHDRGIAPQELISQL 269
>sp|A3MS28|RFCS_PYRCJ Replication factor C small subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rfcS PE=3 SV=1
Length = 326
Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 71/273 (26%), Positives = 119/273 (43%), Gaps = 36/273 (13%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLL--YVFYGPHGTGKTSCARIFARAL--- 467
+KY PR+F ++V V L V K G L +FYGP GTGKT+ A + AR L
Sbjct: 8 EKYRPRSFEEVVDLEEVKARLREFV---KAGNLPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 468 ----NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS 523
N L G I R + + PVG +
Sbjct: 65 YWRENTLELNASDERG-----IGVIRERVKEFARTAPVGK-------------------A 100
Query: 524 QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKM 583
+++ + D+ D ++ D+ A+ ++++ + FIL+++ + + IISRC F F M
Sbjct: 101 PFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPM 160
Query: 584 KDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQE 643
+ L+ IA EG+E+ DA+ LI S+G +R A L+ + + + + V
Sbjct: 161 PRHLMAERLREIARSEGVELKDDAIDLIYEISEGDMRKAINLLQVAAAVSKVVDANAVAS 220
Query: 644 LVGLISDEKLVDLLDLALSADTVNTVKNLRVIM 676
+ +++L +LA+ D LR +M
Sbjct: 221 AAAAVRPSDVLELFNLAMGGDLAKARDKLRELM 253
>sp|A4WLY0|RFCS2_PYRAR Replication factor C small subunit 2 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS2 PE=3 SV=1
Length = 322
Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 68/285 (23%), Positives = 126/285 (44%), Gaps = 33/285 (11%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL----- 467
+KY PR+F ++V V L V + L +FYGP GTGKT+ A + AR L
Sbjct: 8 EKYRPRSFDEVVDLEEVKARLREFVRGGNMPHL-LFYGPPGTGKTTMALVLARELYGEYW 66
Query: 468 --NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
N L G I+ R + + PVG + +
Sbjct: 67 RENTLELNASDERG-----INVIRERVKEFARTAPVGK-------------------APF 102
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++ + D+ D ++ D+ A+ ++++ + FIL+++ + + I SR F +
Sbjct: 103 KLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPK 162
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L++IA EG++I DAL+ I + G +R A L+ + G+ I+ V + +
Sbjct: 163 EAVFARLRYIADNEGVKISDDALEAIYEFTQGDMRRAINALQIAATTGKEITEETVAKAL 222
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLR-VIMETGVEPLALMSQL 689
G++S L + L+ A + + +++ G+ L ++ QL
Sbjct: 223 GMVSPRLLRETLNDAFRGNFGKAATQIYGFVVDGGIGELEIVKQL 267
>sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1
Length = 320
Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 69/285 (24%), Positives = 127/285 (44%), Gaps = 33/285 (11%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL----- 467
+KY PR+F ++V V L V + L +FYGP GTGKT+ A + AR L
Sbjct: 8 EKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHL-LFYGPPGTGKTTMALVLARELYGEYW 66
Query: 468 --NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
N L G I+ R + + PVG + +
Sbjct: 67 RENTLELNASDERG-----INVIRERVKEFARTAPVGK-------------------APF 102
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++ + D+ D ++ D+ A+ ++++ + FIL+++ + + I SR F +
Sbjct: 103 KLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPK 162
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+I L++IA EG++I DAL+ I + G +R A L+ + + I+ +V +
Sbjct: 163 EAVISRLRYIAENEGVKISDDALETIYEFTQGDMRKAINALQIAAATEKEITEDVVARAL 222
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLR-VIMETGVEPLALMSQL 689
G++S L + L AL + + + +++ GV L ++ Q+
Sbjct: 223 GMVSPRLLRETLQEALKGNFSKAMTQIYGFVVDGGVGELEIIRQI 267
>sp|Q3ITJ2|RFCS_NATPD Replication factor C small subunit OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1
Length = 325
Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 77/336 (22%), Positives = 139/336 (41%), Gaps = 48/336 (14%)
Query: 401 GDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCA 460
GD G + +KY P+T D+VG + + L + + + L +F GP G GKT+ A
Sbjct: 4 GDADGGGREIWIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHL-LFAGPAGVGKTTAA 62
Query: 461 RIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR 520
A+ + + F S RG +D++ + + S
Sbjct: 63 TAIAKEVYGDDWRE----NFLELNASDQRG-------------------IDVVRDRIKSF 99
Query: 521 PPSQY-----RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRC 575
+ + RI D+ D L+ D+ SA+ + +++ FIL + + I SRC
Sbjct: 100 ARASFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRC 159
Query: 576 QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR 635
F F + DA + ++ IA EGIE+ D + + +DG +R A L+ +++G
Sbjct: 160 AVFRFSPLGDAAVDEQIRIIADTEGIELTDDGVDALVYAADGDMRKAINGLQAAAVMGGT 219
Query: 636 ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD 695
+ V + E++ +++ A+ D A SQL T++TD
Sbjct: 220 VDEEAVYTITSTARPEEIREMVTEAMDGDFT-----------------AARSQLETLLTD 262
Query: 696 ILAGSYDFTKDRHRR--KFFRRQPLSKEEMEKLRQA 729
+ D HR +F + + + ME++ +A
Sbjct: 263 VGIAGGDIIDQLHRSVWEFDLEEREAVQLMERIGEA 298
>sp|Q8SQM0|RFC4_ENCCU Replication factor C subunit 4 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RFC4 PE=1 SV=1
Length = 309
Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 129/284 (45%), Gaps = 35/284 (12%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L KY P +D+VG + +S + R + L +F GP GTGKT+CA+I AR L
Sbjct: 4 LVNKYQPSEIQDIVGNEATMELVSLMIESRDMPHL-LFTGPPGTGKTTCAKILARRL--- 59
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEV-GPVGNFDFESILDLLDNMVTSRPPSQYRIFV 529
G + + R I V + +F + D +++I +
Sbjct: 60 -------LGNKEGLLELNASDERGIDTVRTTIKSFAQRRVKD-----------CEFKIII 101
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ D+++ + A+ +V++ FIL+ + + I SRC F +++ + I+
Sbjct: 102 LDEADSMTTTAQQAMRRVMEIHSSECRFILICNVFTKIFEPIQSRCAILRFDRIEQSVIL 161
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVP------LVQE 643
L+ I+ EGI I +AL L+ SDG +R + L++L I+ P + +
Sbjct: 162 KRLKEISEGEGIRITAEALDLVVELSDGDMR------QSLNILQACINSPGTVDQDYIIK 215
Query: 644 LVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMS 687
++GL S +++ +L L + ++ I E +PL L++
Sbjct: 216 IIGLPSPKRIEKVLQRLLKREVEEALEMFDEIWEEKFDPLDLIN 259
>sp|P40348|RFC2_YEAST Replication factor C subunit 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC2 PE=1 SV=1
Length = 353
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 135/288 (46%), Gaps = 13/288 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
Q +KY P+ ++ Q+ L + + + +FYGP GTGKTS + L
Sbjct: 24 QQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHM-LFYGPPGTGKTSTILALTKEL 82
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
L + + S +RG S ++E V NF ++ + + + P Y+I
Sbjct: 83 YGPDLMKSR---ILELNASDERGISI-VRE--KVKNFARLTVSKPSKHDLENYPCPPYKI 136
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
+ D+ D+++ D+ SA+ + ++ F L+ + + + + SRC KF F + ++
Sbjct: 137 IILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASN 196
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLS----LL--GQRISVPLV 641
I L++I+ +E ++ D L+ I S G LR L+ S L G+ I+ V
Sbjct: 197 AIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQV 256
Query: 642 QELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689
+EL G++ + L+++++ S D K + M++G ++++QL
Sbjct: 257 EELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQL 304
>sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1
Length = 321
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 121/285 (42%), Gaps = 33/285 (11%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL----- 467
+KY P+ ++VGQ V + L + V + + L +F G G GKT+CA AR +
Sbjct: 10 EKYRPKNLAEVVGQQDVVERLRSYVATKALPHL-LFTGSAGVGKTTCAVALAREMFGDTW 68
Query: 468 --NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
N + L G I R + + P+G+ + +
Sbjct: 69 NMNFRELNASDERG-----IDVVRNQIKQFARTAPLGD-------------------ATF 104
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+I D+ D L+ D+ +A+ + ++ FIL + + I SRC + F + D
Sbjct: 105 KILFLDEADALTQDAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTD 164
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
I + IA KEGI ID+ A I S G +R A L+ +++ ++ + +
Sbjct: 165 EAISEEIARIAKKEGITIDEGAYVAITYVSLGDMRKAINALQGAAIVSDHVTAENIYAIT 224
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIM-ETGVEPLALMSQL 689
+++ DLL L D + L +M + G+ P L++QL
Sbjct: 225 SNAKPQEITDLLARCLEGDFETAERMLHALMYDKGIAPNELLNQL 269
>sp|Q4JAB0|RFCS_SULAC Replication factor C small subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcS PE=3 SV=1
Length = 325
Score = 79.3 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 65/264 (24%), Positives = 122/264 (46%), Gaps = 19/264 (7%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P++ ++V Q + + L V + + L +F GP GTGKT+ A R L +
Sbjct: 9 EKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHL-LFAGPPGTGKTTAALALVRDLYGNNY 67
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
Q F S +RG + + N + + + ++ P +++ + D+
Sbjct: 68 RQY----FLELNASDERG-------IDVIRN----KVKEFARTVASNNVP--FKVILLDE 110
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
D ++ D+ A+ + ++ FIL + L + I SR F F +K D++ L
Sbjct: 111 ADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRL 170
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEK 652
IA E +E D ++ I + G +R A ++ S G +I+V V +++GL ++
Sbjct: 171 IQIAKNEKVEFDPKGIETIFDITQGDMRKAINVIQAASAYG-KITVETVYKVLGLAQPKE 229
Query: 653 LVDLLDLALSADTVNTVKNLRVIM 676
+ ++L LALS + LR ++
Sbjct: 230 IREMLHLALSGKFLQARDKLRELL 253
>sp|O26343|RFCS_METTH Replication factor C small subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rfcS PE=1 SV=1
Length = 321
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 106/240 (44%), Gaps = 31/240 (12%)
Query: 412 TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS 471
+KY P+ D+VGQ + L V + + L +F GP G GKT+ A AR + +
Sbjct: 9 VEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNL-MFTGPAGVGKTTAALALAREILGEY 67
Query: 472 LEQPKPCGFCNSCISHDRG------KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
Q F S RG +N + PVG + +
Sbjct: 68 WRQ----NFLELNASDARGIDTVRTSIKNFCRLKPVG--------------------APF 103
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
RI D+ D ++ D+ A+ + ++ + FIL + + I SRC F F +K
Sbjct: 104 RIIFLDEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKG 163
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
II L++IA KE +E + AL+ I ++G LR A L+ + LG++I+ + ++V
Sbjct: 164 HQIIKRLEYIAEKENLEYEAHALETIVYFAEGDLRKAINLLQSAASLGEKITESSIYDVV 223
>sp|A7I8Y0|RFCS_METB6 Replication factor C small subunit OS=Methanoregula boonei (strain
6A8) GN=rfcS PE=3 SV=1
Length = 322
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 128/292 (43%), Gaps = 27/292 (9%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLL--YVFYGPHGTGKTSCARIFAR 465
H +KY P D+VGQ+ + + LS+ V K G L +F G G GKT+ A AR
Sbjct: 5 HTIWIEKYRPAKLADIVGQDDIVERLSSYV---KSGNLPHLLFTGSAGVGKTTAAVTLAR 61
Query: 466 ALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP--S 523
S + N +E+ + + + + +RP +
Sbjct: 62 EFFGDSWQM-------------------NFRELNASDERGIDVVRNQIKEFARTRPAGDA 102
Query: 524 QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKM 583
++I D+ D L+ D+ +A+ + ++ + FIL + + I SRC + F +
Sbjct: 103 AFKILFLDEADALTTDAQAALRRTMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPL 162
Query: 584 KDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQE 643
+ + IA++E +++ +A+ + + G +R A L+ ++L I P+V
Sbjct: 163 GPQAVKEEITRIAAREHLDVTPEAMDAMVYIAQGDMRKAINALQGAAILSATIEAPMVYA 222
Query: 644 LVGLISDEKLVDLLDLALSADTVNTVKNL-RVIMETGVEPLALMSQLATVIT 694
+ E++ +LL L+LS D L R++ E G+ P L++Q +T
Sbjct: 223 ITSNARPEEIGELLTLSLSGDFDGAEALLTRLLRERGIAPNELINQCYRALT 274
>sp|Q9UXF5|RFCS_SULSO Replication factor C small subunit OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rfcS
PE=1 SV=1
Length = 330
Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 72/289 (24%), Positives = 128/289 (44%), Gaps = 32/289 (11%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P+T D+V Q + L V + + L +F GP GTGKT+ A L +
Sbjct: 12 EKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHL-LFAGPPGTGKTTAALALVHDLYGDNY 70
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS------QYR 526
+ F S +RG +D++ N V + ++
Sbjct: 71 TEY----FLELNASDERG-------------------IDVIRNKVKEFARTVIPGDIPFK 107
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+ + D+ D ++ D+ A+ + ++ FIL + L + I SR F F +K
Sbjct: 108 VVLLDEADNMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKE 167
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVG 646
D++ L +IA E E D+ AL+ I + G +R + L+ S G +ISV V +++G
Sbjct: 168 DVVNRLIYIAKNEKAEYDQKALETIYDITMGDMRKSINILQAASAYG-KISVEAVFKVLG 226
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMET-GVEPLALMSQLATVIT 694
L +++ ++++LAL LR ++ T G+ ++ Q+ IT
Sbjct: 227 LAQPKEVREMINLALQGKFTQARDKLRTLLITYGLSGEDIVKQIHREIT 275
>sp|Q5UP47|RFCS3_MIMIV Putative replication factor C small subunit L499 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_L499 PE=3 SV=1
Length = 344
Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 74/333 (22%), Positives = 149/333 (44%), Gaps = 56/333 (16%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTS----CAR-IFARAL 467
+KY P+ ++ + +L + R + L +F+GP G+GKTS CAR I+ + +
Sbjct: 21 EKYRPQEIDHIISNRDIILSLKKFIESRTLPHL-LFFGPSGSGKTSTIKCCAREIYGKYI 79
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP----- 522
N LE N+ S++RG E++ + N V+S+
Sbjct: 80 NYMILE-------LNA--SNERG---------------IETVRTKIKNFVSSKSSIFLPM 115
Query: 523 ---SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFF 579
+++ + D+ D+++ ++ + + +++ F L+ + +D + + SRC F
Sbjct: 116 GVRDIFKLVILDEIDSMTVEAQGMLRQTIEKNSGTTRFCLICNDIDKINIALQSRCASFR 175
Query: 580 FPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL-LGQRISV 638
F + + D+ L I EG++ +K+A+ I S G +R A TL+ ++L +G I+
Sbjct: 176 FSPLNELDMHGRLSDICRLEGVKYEKEAINSIIKISKGDMRSAINTLQHVNLVIGGSINT 235
Query: 639 PLVQELVGLISDEKLVDLLDLALSADTVNTVKNLR--------VIMETGVEPLALMSQLA 690
V ++ G E + D+ D+ S + N K+L+ ++ E + L+ +L
Sbjct: 236 EDVYKISGHCMPEIVTDVFDILFSLNK-NKTKSLKKSVNDIITIVTENNITIFNLLEELK 294
Query: 691 TVITDILAGSYDFTKDRHRRKFFRRQPLSKEEM 723
++ + +K +K F +K EM
Sbjct: 295 NIVME--------SKFTTSQKIFLIDNFAKTEM 319
>sp|P35249|RFC4_HUMAN Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2
Length = 363
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 119/256 (46%), Gaps = 14/256 (5%)
Query: 401 GDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCA 460
G+N+ + +KY P+ ++ Q V L ++ + L +FYGP GTGKTS
Sbjct: 30 GENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNL-LFYGPPGTGKTSTI 88
Query: 461 RIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV-GPVGNFDFESILDLLDNMVTS 519
AR L L F + + R I+ V V NF + L + +
Sbjct: 89 LAAARELFGPEL-------FRLRVLELNASDERGIQVVREKVKNF---AQLTVSGSRSDG 138
Query: 520 RPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFF 579
+P ++I + D+ D+++ + +A+ + +++ + F L+ + + + + SRC KF
Sbjct: 139 KPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFR 198
Query: 580 FPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRIS 637
F + D L IA KE ++I + + + S+G LR A L+ + L G+ I+
Sbjct: 199 FKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEIT 258
Query: 638 VPLVQELVGLISDEKL 653
++ ++ G+I EK+
Sbjct: 259 EKVITDIAGVIPAEKI 274
>sp|Q9HN27|RFCS_HALSA Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rfcS PE=3
SV=1
Length = 322
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 21/266 (7%)
Query: 400 LGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSC 459
+ D GR + +KY P D+VG + + L + V R + L +F GP GTGKT+
Sbjct: 1 MTDAAGGRQEIWVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHL-LFAGPAGTGKTAS 59
Query: 460 ARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV-T 518
+ A+ L + F S +RG + + D + + +
Sbjct: 60 SVSIAKELYGDDWQD----NFLELNASDERG---------------IDVVRDRIKDFARS 100
Query: 519 SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKF 578
S YR+ D+ D L+ D+ SA+ + +++ FIL + + I SRC F
Sbjct: 101 SFGGHNYRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVF 160
Query: 579 FFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISV 638
F ++ D + L+ IA EG+E D + + +DG +R A L+ S G ++
Sbjct: 161 RFAQLGDDAVAAHLREIAETEGLEHTDDGIDALVYAADGDMRRAINALQAASATGDSVNE 220
Query: 639 PLVQELVGLISDEKLVDLLDLALSAD 664
V + E++ ++ AL D
Sbjct: 221 ETVYAITATARPEEIETMVTEALGGD 246
>sp|B0R7H7|RFCS_HALS3 Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1
Length = 322
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 21/266 (7%)
Query: 400 LGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSC 459
+ D GR + +KY P D+VG + + L + V R + L +F GP GTGKT+
Sbjct: 1 MTDAAGGRQEIWVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHL-LFAGPAGTGKTAS 59
Query: 460 ARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV-T 518
+ A+ L + F S +RG + + D + + +
Sbjct: 60 SVSIAKELYGDDWQD----NFLELNASDERG---------------IDVVRDRIKDFARS 100
Query: 519 SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKF 578
S YR+ D+ D L+ D+ SA+ + +++ FIL + + I SRC F
Sbjct: 101 SFGGHNYRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVF 160
Query: 579 FFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISV 638
F ++ D + L+ IA EG+E D + + +DG +R A L+ S G ++
Sbjct: 161 RFAQLGDDAVAAHLREIAETEGLEHTDDGIDALVYAADGDMRRAINALQAASATGDSVNE 220
Query: 639 PLVQELVGLISDEKLVDLLDLALSAD 664
V + E++ ++ AL D
Sbjct: 221 ETVYAITATARPEEIETMVTEALGGD 246
>sp|Q09843|RFC2_SCHPO Replication factor C subunit 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc2 PE=1 SV=1
Length = 340
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 132/281 (46%), Gaps = 13/281 (4%)
Query: 415 YMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQ 474
Y P+T + Q Q L ++ + + +FYG GTGKTS +R L L +
Sbjct: 25 YRPKTLDQVSSQESTVQVLKKTLLSNNLPHM-LFYGSPGTGKTSTILALSRELFGPQLMK 83
Query: 475 PKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCD 534
+ N+ S +RG S I+E V +F ++ N V P ++I + D+ D
Sbjct: 84 SRVLEL-NA--SDERGISI-IRE--KVKSFAKTTV----TNKVDGYPCPPFKIIILDEAD 133
Query: 535 TLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQW 594
+++ D+ +A+ + ++ R F L+ + + + + SRC K+ F + + +++ L++
Sbjct: 134 SMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEF 193
Query: 595 IASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRISVPLVQELVGLISDEK 652
IA+ + + ++ + + S G +R A L+ + L G I++ V+EL G +
Sbjct: 194 IAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEELAGAVPYNI 253
Query: 653 LVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVI 693
+ LLD A + + N R + G ++SQL V+
Sbjct: 254 IRSLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVL 294
>sp|Q54MD4|RFC4_DICDI Probable replication factor C subunit 4 OS=Dictyostelium discoideum
GN=rfc4 PE=3 SV=1
Length = 347
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 12/247 (4%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
KY P+T D+ Q V AL ++ + L +FYGP GTGKTS I A A++ E
Sbjct: 15 KYRPKTVDDVSYQEDVISALKKSLNTGNLPHL-LFYGPPGTGKTST--ILAIAMDIYGPE 71
Query: 474 QPKPCGFCNSCISHDRGKSRNIKEV-GPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
K + + R I+ V + NF ++ TS P + +++ + D+
Sbjct: 72 LMK-----QRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTG--TSNPGATFKLIILDE 124
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
D+++ D+ +A+ + ++ + F L+ + + + + SRC KF F + I L
Sbjct: 125 ADSMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERL 184
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLISDE 651
++I+ +EGI+ ++ + I S+G +R A L+ +IS ++ + G + +
Sbjct: 185 KFISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQ 244
Query: 652 KLVDLLD 658
+ L+D
Sbjct: 245 LIKQLVD 251
>sp|Q8ZWS2|RFCS2_PYRAE Replication factor C small subunit 2 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS2 PE=3 SV=1
Length = 319
Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 60/252 (23%), Positives = 113/252 (44%), Gaps = 32/252 (12%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL----- 467
+KY PR+F ++V V L V + L +FYGP GTGKT+ A + AR L
Sbjct: 8 EKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHL-LFYGPPGTGKTTMALVLARELYGEYW 66
Query: 468 --NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
N L G I+ R + + PVG + +
Sbjct: 67 RENTLELNASDERG-----INVIRERVKEFARTAPVGK-------------------APF 102
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++ + D+ D ++ D+ A+ ++++ + FIL+++ + + I SR F +
Sbjct: 103 KLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPK 162
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
+ L++IA EG+++ DAL+ I + G +R A L+ + + + ++ +V + +
Sbjct: 163 EAVFARLRYIAENEGVKVSDDALEAIYEFTQGDMRRAINALQIAATVSKAVTEEVVAKAL 222
Query: 646 GLISDEKLVDLL 657
G++S L + L
Sbjct: 223 GMVSPRLLRETL 234
>sp|Q2NH89|RFCS_METST Replication factor C small subunit OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=rfcS PE=3 SV=1
Length = 321
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 19/209 (9%)
Query: 412 TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS 471
+KY P+T D+VGQ + L V + + + +F G G GKT+CA A++L +
Sbjct: 6 VEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPNI-MFTGFAGVGKTTCALALAKSLLGEY 64
Query: 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
+Q F S RG + V N + +S L + +RI D
Sbjct: 65 WQQ----NFLELNASDARG-------IDTVRN-EIKSFCKL------KAVGAPFRIIFLD 106
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+ D ++ D+ A+ + ++ + FIL + + I SRC F F +K A+II
Sbjct: 107 EVDNMTKDAQQALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIKR 166
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLR 620
L++IAS+EGIE ++ AL+ I + G +R
Sbjct: 167 LKYIASEEGIEAEQSALENIVYFTQGDMR 195
>sp|Q9D0F6|RFC5_MOUSE Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=2 SV=1
Length = 339
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 123/272 (45%), Gaps = 25/272 (9%)
Query: 406 GRHQNL--TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIF 463
R +NL +KY P+T DL+ + + + ++ L + YGP GTGKTS
Sbjct: 14 ARARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHL-LLYGPPGTGKTSTILAC 72
Query: 464 ARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV-GPVGNFDFESILDLLDNMVTSRPP 522
A+ L K F + + + R I V GP+ +F ++R
Sbjct: 73 AKQLY-------KDKEFGSMVLELNASDDRGIDIVRGPILSF------------ASTRTI 113
Query: 523 SQ--YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFF 580
+ +++ + D+ D ++ D+ +A+ +V+++ F L+ + L + + SRC +F F
Sbjct: 114 FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRF 173
Query: 581 PKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPL 640
+ ++ L+ + +E ++I +D +K + + S G +R A L+ ++ +++
Sbjct: 174 GPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEET 233
Query: 641 VQELVGLISDEKLVDLLDLALSADTVNTVKNL 672
V G + ++LD L+ D KN+
Sbjct: 234 VYTCTGHPLKTDIANILDWMLNQDFTTAYKNI 265
>sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1
Length = 315
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 124/271 (45%), Gaps = 30/271 (11%)
Query: 412 TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS 471
+KY P+T ++VG + + + L+N V ++ + L +F G G GKT+ A A+ L ++
Sbjct: 6 VEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHL-LFSGSPGVGKTTAALALAKDLYGET 64
Query: 472 LEQPKPCGFCNSCISHDRG------KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
+ F S +RG K ++ P+G+ + +
Sbjct: 65 WRE----NFLELNSSDERGIDVIRTKVKDFARTKPIGD-------------------APF 101
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++ D+ D L+ D+ +A+ + +++ F+L + + I SRC F F +K
Sbjct: 102 KVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKT 161
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
D++ L+ I+ KE + ++K + I S+G +R A L+ + + ++ +V ++
Sbjct: 162 EDLVENLKEISEKENLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVA 221
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIM 676
+++ + LAL+ V + + L +M
Sbjct: 222 SKARPDEIKKMTQLALNGKFVESREQLYNLM 252
>sp|Q8TSX5|RFCS_METAC Replication factor C small subunit OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rfcS
PE=3 SV=1
Length = 338
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 136/308 (44%), Gaps = 32/308 (10%)
Query: 398 QNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKT 457
Q L ++ + + +KY P + GQ+ + L + V + + L +F GP G GKT
Sbjct: 2 QALMEDSKIKEEIWIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHL-LFSGPPGVGKT 60
Query: 458 SCARIFARALNCQSLEQPKPCGFCNSCISHDRG------KSRNIKEVGPVGNFDFESILD 511
+ A AR + + L + F S +RG K +N + P+G
Sbjct: 61 ASAVSIAREIFGEDLWRE---NFTELNASDERGIDIVRNKIKNFAKTAPIGG-------- 109
Query: 512 LLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHII 571
+ ++I D+ D L+ D+ SA+ + ++R FIL + + I
Sbjct: 110 -----------APFKIIFLDEADALTADAQSALRRTMERFSSNCRFILSCNYSSKIIEPI 158
Query: 572 ISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL 631
SRC + F ++ D I L++IA +G+ I + + + + G +R A +L+ +
Sbjct: 159 QSRCAVYRFRRLSDEAIKERLEYIAGDQGLSITEGGYEALIYVAQGDMRKAVNSLQAAAF 218
Query: 632 L--GQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNL-RVIMETGVEPLALMSQ 688
+ + IS + + E++ +L++ AL + K L R++ E G+ ++ Q
Sbjct: 219 IDTDKSISRETIYRTTATANPEEIKNLIETALRGNFRIARKELNRLLYEEGLSGEDIVGQ 278
Query: 689 LATVITDI 696
+ V++++
Sbjct: 279 IYRVVSEM 286
>sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcS PE=3 SV=1
Length = 315
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 121/271 (44%), Gaps = 30/271 (11%)
Query: 412 TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS 471
+KY P T ++VG + + + L+N V ++ + L +F G G GKT+ A A+ L +
Sbjct: 6 VEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHL-LFSGSPGVGKTTAALALAKDLYGDT 64
Query: 472 LEQPKPCGFCNSCISHDRG------KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
+ F S +RG K ++ P+G+ + +
Sbjct: 65 WRE----NFLELNSSDERGIDVIRTKVKDFARTKPIGD-------------------APF 101
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++ D+ D L+ D+ +A+ + +++ FIL + + I SRC F F +K
Sbjct: 102 KVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKT 161
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
D++ L+ I+ KE + ++K + I S+G +R A L+ + + I+ +V ++
Sbjct: 162 EDLVENLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDEITEEIVYKVA 221
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIM 676
+++ + LAL+ V + L +M
Sbjct: 222 SKARPDEIKKMTQLALNGKFVEAREQLYNLM 252
>sp|P0C7N7|RFC2_PHANO Replication factor C subunit 2 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=RFC2 PE=3 SV=1
Length = 411
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 107/240 (44%), Gaps = 15/240 (6%)
Query: 405 NGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFA 464
+ R Q +KY P+T ++ Q+ Q LS + + + +FYGP GTGKTS A
Sbjct: 29 SNRLQPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHM-LFYGPPGTGKTSTILALA 87
Query: 465 RALNCQSLEQPKPCGFCNS---CISHDRGKSRNIK----EVGPVGNFDFESILDLLDNMV 517
+ L L + + S IS R K ++ V P N E MV
Sbjct: 88 KQLYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMV 147
Query: 518 TSR-----PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIII 572
R PP ++I V D+ D+++ D+ SA+ + ++ R F LV + + + +
Sbjct: 148 RYRDKYSCPP--FKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLA 205
Query: 573 SRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL 632
SRC KF F + + + + IA E +++D + + +DG LR A L+ + L
Sbjct: 206 SRCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSAARL 265
>sp|Q5UQ72|RFCS4_MIMIV Putative replication factor C small subunit L510 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R510 PE=3 SV=1
Length = 363
Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 16/220 (7%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P+ D+ + N+ + ++ ++FYGP GTGKTS R + +
Sbjct: 11 EKYRPKKLEDITQSQNLLDLFKNSTKKGEM-THFLFYGPPGTGKTSAILAMGREIFKEH- 68
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEV-GPVGN--FDFESILDLLDNMVTSRPPSQYRIFV 529
F N I + R I V + N + + + L D + PS Y+I +
Sbjct: 69 -------FQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTII---PS-YKIII 117
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ D+++ ++ A+ ++++ F + + + + I SRC +F K+ D ++
Sbjct: 118 LDEADSMTDEAQDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLSDECMV 177
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL 629
L I+ KE +E+ K+ L I S+G +R A M L+
Sbjct: 178 EKLNDISLKESMELPKNILHTIIDVSNGDMRKAIMLLQNF 217
>sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1
Length = 315
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 121/271 (44%), Gaps = 30/271 (11%)
Query: 412 TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS 471
+KY P ++VG + + L N V ++ + L +F G G GKT+ A A+ L +
Sbjct: 6 VEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHL-LFSGSPGVGKTTAALCLAKDLYGNT 64
Query: 472 LEQPKPCGFCNSCISHDRG------KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
++ F S +RG K ++ P+G+ + +
Sbjct: 65 WKE----NFLELNSSDERGIDVIRTKVKDFARTKPIGD-------------------APF 101
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++ D+ D L+ D+ +A+ + +++ F+L + + I SRC F F +K
Sbjct: 102 KVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKT 161
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
D++ L+ I+ KE I ++K + I S+G +R A L+ + + + I+ ++ ++
Sbjct: 162 EDLVKNLKEISEKESINVEKSGMDAIIYVSEGDMRKAINVLQTGAAVSKNINETVIYKVA 221
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIM 676
+++ + +LAL+ V + L +M
Sbjct: 222 SKARPDEIKKMTELALNGKFVEAREQLYKLM 252
>sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1
Length = 334
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 128/293 (43%), Gaps = 32/293 (10%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P + GQ + L + V + + L +F GP G GKT+ A AR + + L
Sbjct: 13 EKYRPVRLDQVAGQEETIERLKSYVATKNLPHL-LFSGPPGVGKTASAVSIAREIFGEDL 71
Query: 473 EQPKPCGFCNSCISHDRG------KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYR 526
+ F S +RG K +N + P+G ++++
Sbjct: 72 WRE---NFTELNASDERGIDVVRTKIKNFAKTAPMGG-------------------AEFK 109
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
I D+ D L+ D+ SA+ + ++R FIL + + I SRC F F ++ D
Sbjct: 110 IIFLDEADALTSDAQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDE 169
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRISVPLVQEL 644
I L++IA + + I +D + + S G +R A +L+ + + + IS +
Sbjct: 170 AIRKRLEYIAKDQVLSITEDGYEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRT 229
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNL-RVIMETGVEPLALMSQLATVITDI 696
+ E + +L++ AL + K L R++ E G+ ++ Q+ I+++
Sbjct: 230 TATANPEDIRNLIETALRGNFRVARKELNRLLYEEGLSGEDIVGQIYRAISEM 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,678,931
Number of Sequences: 539616
Number of extensions: 17776512
Number of successful extensions: 59102
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 360
Number of HSP's that attempted gapping in prelim test: 58653
Number of HSP's gapped (non-prelim): 656
length of query: 1152
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1023
effective length of database: 121,958,995
effective search space: 124764051885
effective search space used: 124764051885
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)