Query 036794
Match_columns 1152
No_of_seqs 633 out of 4036
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:35:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05563 DNA polymerase III su 100.0 3.8E-57 8.3E-62 542.8 47.8 502 406-943 1-513 (559)
2 PRK14948 DNA polymerase III su 100.0 9.5E-56 2.1E-60 534.7 54.9 510 407-949 2-519 (620)
3 PRK14952 DNA polymerase III su 100.0 5.5E-56 1.2E-60 531.8 51.7 500 409-948 1-516 (584)
4 PRK14965 DNA polymerase III su 100.0 4.8E-55 1E-59 526.6 47.7 512 407-947 2-527 (576)
5 PRK14958 DNA polymerase III su 100.0 7.2E-54 1.6E-58 509.0 44.9 453 406-945 1-456 (509)
6 COG2812 DnaX DNA polymerase II 100.0 3E-54 6.5E-59 506.0 29.9 355 406-760 1-360 (515)
7 PRK14950 DNA polymerase III su 100.0 1.5E-51 3.2E-56 497.8 53.0 520 407-940 2-541 (585)
8 PRK14954 DNA polymerase III su 100.0 4.9E-51 1.1E-55 492.0 51.8 355 406-760 1-373 (620)
9 PRK14971 DNA polymerase III su 100.0 7.4E-51 1.6E-55 492.2 53.3 533 407-948 3-582 (614)
10 PRK07764 DNA polymerase III su 100.0 3.2E-50 6.9E-55 497.5 54.7 350 409-759 3-364 (824)
11 PRK14951 DNA polymerase III su 100.0 5.5E-50 1.2E-54 481.8 51.2 353 406-759 1-363 (618)
12 PRK09111 DNA polymerase III su 100.0 3.2E-49 6.9E-54 475.6 46.9 356 405-760 8-374 (598)
13 PRK14963 DNA polymerase III su 100.0 6.4E-49 1.4E-53 466.0 48.5 490 410-943 3-497 (504)
14 PRK14964 DNA polymerase III su 100.0 6.4E-50 1.4E-54 470.5 37.1 347 410-759 2-353 (491)
15 PRK14969 DNA polymerase III su 100.0 7.1E-49 1.5E-53 468.6 46.0 473 406-945 1-477 (527)
16 PRK14956 DNA polymerase III su 100.0 4.1E-50 8.9E-55 468.2 34.3 356 406-761 3-370 (484)
17 PRK08691 DNA polymerase III su 100.0 3.1E-48 6.8E-53 465.8 49.0 353 406-759 1-357 (709)
18 PRK06645 DNA polymerase III su 100.0 1.9E-49 4.2E-54 469.3 37.8 447 405-941 5-466 (507)
19 PRK07994 DNA polymerase III su 100.0 6.7E-48 1.5E-52 464.6 49.9 352 406-758 1-357 (647)
20 PRK07003 DNA polymerase III su 100.0 2.1E-49 4.6E-54 475.5 36.2 353 406-759 1-357 (830)
21 PRK14957 DNA polymerase III su 100.0 1.2E-47 2.6E-52 456.6 47.5 489 407-947 2-498 (546)
22 PRK14960 DNA polymerase III su 100.0 6.9E-49 1.5E-53 467.8 35.8 352 407-759 1-357 (702)
23 PRK06647 DNA polymerase III su 100.0 9.1E-49 2E-53 469.6 36.9 356 407-763 2-361 (563)
24 PRK12323 DNA polymerase III su 100.0 6.5E-49 1.4E-53 467.0 34.1 353 406-759 1-362 (700)
25 PRK14955 DNA polymerase III su 100.0 2.7E-48 5.9E-53 450.1 34.8 353 407-759 2-372 (397)
26 PRK14961 DNA polymerase III su 100.0 1.2E-47 2.6E-52 439.9 38.5 352 407-759 2-359 (363)
27 PRK14953 DNA polymerase III su 100.0 8.5E-48 1.8E-52 455.0 37.6 350 406-759 1-353 (486)
28 PRK14949 DNA polymerase III su 100.0 1.7E-47 3.6E-52 466.4 37.1 353 406-759 1-356 (944)
29 PRK14962 DNA polymerase III su 100.0 2.2E-46 4.9E-51 441.3 45.3 448 409-945 2-453 (472)
30 TIGR02397 dnaX_nterm DNA polym 100.0 1.5E-46 3.2E-51 426.0 37.5 350 408-758 1-355 (355)
31 KOG0989 Replication factor C, 100.0 2.5E-47 5.3E-52 415.6 28.6 323 407-741 22-345 (346)
32 PRK14959 DNA polymerase III su 100.0 1.3E-46 2.8E-51 450.3 35.0 355 406-761 1-363 (624)
33 PRK06305 DNA polymerase III su 100.0 4.1E-46 9E-51 437.7 36.6 344 407-759 3-348 (451)
34 PRK07133 DNA polymerase III su 100.0 1.4E-45 3E-50 446.6 38.3 347 406-759 3-354 (725)
35 PRK08451 DNA polymerase III su 100.0 1.2E-43 2.5E-48 420.8 46.4 332 409-759 2-334 (535)
36 PRK05896 DNA polymerase III su 100.0 8.6E-44 1.9E-48 424.3 35.4 351 407-760 2-363 (605)
37 PRK14970 DNA polymerase III su 100.0 3.8E-42 8.1E-47 394.1 37.6 342 406-759 2-348 (367)
38 PLN03025 replication factor C 100.0 9.4E-38 2E-42 352.2 35.0 307 410-759 2-311 (319)
39 PRK00440 rfc replication facto 100.0 5.7E-36 1.2E-40 333.7 37.0 310 407-759 3-315 (319)
40 PRK12402 replication factor C 100.0 7.9E-35 1.7E-39 327.3 36.7 321 409-757 3-336 (337)
41 PRK07940 DNA polymerase III su 100.0 1.2E-32 2.7E-37 318.6 32.3 335 419-759 3-391 (394)
42 PRK05564 DNA polymerase III su 100.0 2E-32 4.3E-37 308.1 32.0 304 419-758 2-311 (313)
43 KOG0991 Replication factor C, 100.0 1E-32 2.2E-37 291.0 24.8 310 407-759 13-325 (333)
44 PRK08058 DNA polymerase III su 100.0 2.8E-31 6.2E-36 301.3 31.0 318 419-759 3-328 (329)
45 PRK07993 DNA polymerase III su 100.0 1.6E-30 3.5E-35 295.5 29.9 306 426-759 7-321 (334)
46 PHA02544 44 clamp loader, smal 100.0 1.9E-29 4.1E-34 282.9 34.8 295 407-758 7-310 (316)
47 PRK06871 DNA polymerase III su 100.0 4.9E-30 1.1E-34 289.9 30.1 307 426-758 7-320 (325)
48 PRK05707 DNA polymerase III su 100.0 1E-29 2.3E-34 288.3 30.3 303 433-759 12-323 (328)
49 PRK07399 DNA polymerase III su 100.0 2.5E-29 5.5E-34 283.7 28.5 285 419-759 2-312 (314)
50 PRK07471 DNA polymerase III su 100.0 6.6E-28 1.4E-32 277.1 32.8 324 415-759 13-362 (365)
51 PRK06964 DNA polymerase III su 100.0 6.1E-28 1.3E-32 274.6 31.8 299 428-758 8-338 (342)
52 COG2256 MGS1 ATPase related to 100.0 1.7E-28 3.7E-33 276.7 26.4 255 409-691 12-291 (436)
53 PRK06090 DNA polymerase III su 100.0 7.5E-28 1.6E-32 271.6 29.9 301 426-758 8-314 (319)
54 PRK04195 replication factor C 100.0 3.8E-27 8.2E-32 280.1 30.8 282 409-742 2-294 (482)
55 PRK13342 recombination factor 100.0 3.8E-27 8.3E-32 275.1 29.9 256 410-693 1-274 (413)
56 PRK09112 DNA polymerase III su 100.0 2.3E-27 5.1E-32 271.3 26.7 214 413-628 15-243 (351)
57 PRK04132 replication factor C 100.0 1.4E-26 2.9E-31 286.4 32.9 271 446-758 567-842 (846)
58 PRK08769 DNA polymerase III su 100.0 2.3E-26 4.9E-31 259.8 28.4 291 426-759 9-308 (319)
59 PRK08699 DNA polymerase III su 99.9 4.5E-26 9.7E-31 258.4 28.4 297 428-758 8-318 (325)
60 PRK13341 recombination factor 99.9 3.9E-26 8.4E-31 281.0 28.8 259 407-693 14-302 (725)
61 PRK07452 DNA polymerase III su 99.9 3.8E-25 8.3E-30 249.7 32.1 294 444-759 2-323 (326)
62 PRK07914 hypothetical protein; 99.9 1.1E-24 2.5E-29 246.3 32.7 293 441-759 3-315 (320)
63 PRK07276 DNA polymerase III su 99.9 1.3E-24 2.8E-29 242.3 30.7 192 425-626 6-198 (290)
64 PRK05629 hypothetical protein; 99.9 3.1E-24 6.7E-29 242.5 33.7 294 441-759 4-315 (318)
65 PRK05907 hypothetical protein; 99.9 2.7E-24 5.9E-29 242.5 30.8 288 430-759 7-310 (311)
66 PRK06585 holA DNA polymerase I 99.9 5.7E-24 1.2E-28 242.0 33.2 296 441-759 18-336 (343)
67 TIGR00678 holB DNA polymerase 99.9 2E-25 4.3E-30 233.3 19.1 186 431-622 2-188 (188)
68 PRK05917 DNA polymerase III su 99.9 1.5E-24 3.3E-29 241.3 25.9 265 428-758 4-274 (290)
69 PRK05574 holA DNA polymerase I 99.9 2.7E-23 5.8E-28 234.8 36.1 305 431-759 6-338 (340)
70 KOG2035 Replication factor C, 99.9 3.9E-24 8.5E-29 231.3 27.4 319 410-757 2-339 (351)
71 COG0470 HolB ATPase involved i 99.9 2.2E-24 4.7E-29 240.8 26.4 228 421-661 1-238 (325)
72 PF13177 DNA_pol3_delta2: DNA 99.9 4.2E-25 9.1E-30 227.3 16.3 159 425-584 1-162 (162)
73 PRK08487 DNA polymerase III su 99.9 3.5E-23 7.5E-28 235.1 31.6 300 431-758 4-323 (328)
74 KOG2028 ATPase related to the 99.9 3.4E-24 7.4E-29 237.6 21.5 262 407-693 124-423 (554)
75 TIGR01128 holA DNA polymerase 99.9 6.4E-23 1.4E-27 227.8 30.0 247 512-758 34-302 (302)
76 KOG0990 Replication factor C, 99.9 1.2E-23 2.6E-28 231.8 19.2 312 405-758 25-348 (360)
77 PRK07132 DNA polymerase III su 99.9 9E-22 2E-26 220.9 32.3 289 427-758 2-295 (299)
78 PF05496 RuvB_N: Holliday junc 99.9 5.8E-23 1.3E-27 219.9 16.7 197 406-632 9-228 (233)
79 PRK05818 DNA polymerase III su 99.9 2.9E-22 6.2E-27 219.3 22.4 230 441-681 5-248 (261)
80 TIGR02902 spore_lonB ATP-depen 99.9 5.6E-23 1.2E-27 247.0 18.0 267 372-648 14-332 (531)
81 PRK00080 ruvB Holliday junctio 99.9 5E-21 1.1E-25 217.2 25.7 209 409-647 13-249 (328)
82 COG1466 HolA DNA polymerase II 99.9 3.6E-20 7.8E-25 211.1 32.5 305 432-759 5-331 (334)
83 TIGR00635 ruvB Holliday juncti 99.8 1.7E-19 3.7E-24 201.6 24.1 200 418-647 1-228 (305)
84 COG2255 RuvB Holliday junction 99.8 4.5E-19 9.8E-24 193.4 22.2 207 411-647 16-250 (332)
85 KOG1969 DNA replication checkp 99.8 3.3E-19 7.2E-24 211.8 22.0 230 408-661 258-552 (877)
86 COG1223 Predicted ATPase (AAA+ 99.8 2.2E-18 4.8E-23 185.5 16.7 211 413-646 113-353 (368)
87 COG2204 AtoC Response regulato 99.8 1.2E-17 2.7E-22 195.4 19.5 200 419-642 139-385 (464)
88 PRK08903 DnaA regulatory inact 99.7 1.3E-16 2.9E-21 171.5 23.1 199 416-647 13-225 (227)
89 COG3829 RocR Transcriptional r 99.7 2.8E-17 6.1E-22 192.5 18.9 208 411-642 238-491 (560)
90 COG1222 RPT1 ATP-dependent 26S 99.7 7.8E-17 1.7E-21 180.6 19.9 207 418-648 148-392 (406)
91 TIGR00602 rad24 checkpoint pro 99.7 1.4E-16 3E-21 193.9 22.1 268 407-681 70-391 (637)
92 TIGR02881 spore_V_K stage V sp 99.7 1.3E-16 2.8E-21 175.9 19.0 187 420-630 5-235 (261)
93 PRK06581 DNA polymerase III su 99.7 2.8E-16 6.1E-21 169.8 19.5 182 430-629 2-191 (263)
94 KOG0734 AAA+-type ATPase conta 99.7 1.1E-16 2.5E-21 184.9 16.5 204 417-644 300-537 (752)
95 COG3604 FhlA Transcriptional r 99.7 7.4E-17 1.6E-21 186.9 14.7 198 419-640 221-464 (550)
96 PRK08084 DNA replication initi 99.7 9.4E-16 2E-20 167.0 21.3 198 419-646 20-234 (235)
97 TIGR02903 spore_lon_C ATP-depe 99.7 7.7E-16 1.7E-20 188.4 21.1 239 406-648 139-430 (615)
98 TIGR03420 DnaA_homol_Hda DnaA 99.7 1E-15 2.2E-20 163.5 19.1 198 418-645 12-225 (226)
99 PRK08727 hypothetical protein; 99.7 2.4E-15 5.3E-20 163.6 21.4 199 419-647 17-230 (233)
100 TIGR02928 orc1/cdc6 family rep 99.7 7E-15 1.5E-19 168.3 26.0 234 409-648 6-274 (365)
101 TIGR02880 cbbX_cfxQ probable R 99.7 1E-15 2.2E-20 171.3 17.9 194 421-632 22-252 (284)
102 PTZ00112 origin recognition co 99.7 3.1E-15 6.7E-20 182.4 23.2 236 408-648 745-1006(1164)
103 PRK06893 DNA replication initi 99.7 2E-15 4.2E-20 163.8 19.3 200 417-646 12-228 (229)
104 CHL00181 cbbX CbbX; Provisiona 99.7 1.3E-15 2.8E-20 170.8 17.4 189 420-632 22-253 (287)
105 KOG0730 AAA+-type ATPase [Post 99.6 4.7E-15 1E-19 176.3 19.5 193 416-632 429-651 (693)
106 TIGR01241 FtsH_fam ATP-depende 99.6 6.7E-15 1.5E-19 176.3 21.0 214 412-648 46-295 (495)
107 PRK00411 cdc6 cell division co 99.6 3.6E-14 7.7E-19 164.3 25.8 233 408-648 20-282 (394)
108 PF03215 Rad17: Rad17 cell cyc 99.6 6.9E-15 1.5E-19 176.2 19.5 221 407-632 5-270 (519)
109 CHL00195 ycf46 Ycf46; Provisio 99.6 1.6E-14 3.4E-19 172.2 21.0 210 417-648 224-463 (489)
110 CHL00176 ftsH cell division pr 99.6 3.9E-14 8.4E-19 173.6 22.0 207 418-647 180-422 (638)
111 TIGR00362 DnaA chromosomal rep 99.6 6.2E-14 1.3E-18 163.9 22.1 206 411-647 103-336 (405)
112 PRK06620 hypothetical protein; 99.6 4E-14 8.7E-19 152.5 18.8 190 411-645 9-213 (214)
113 PRK03992 proteasome-activating 99.6 5.1E-14 1.1E-18 164.1 20.7 208 418-648 128-372 (389)
114 PRK00149 dnaA chromosomal repl 99.6 1.3E-13 2.8E-18 163.4 22.9 205 419-648 120-349 (450)
115 PRK05642 DNA replication initi 99.6 8.3E-14 1.8E-18 151.8 19.6 199 419-646 17-233 (234)
116 PTZ00454 26S protease regulato 99.6 1.4E-13 2.9E-18 160.9 21.9 208 418-648 142-386 (398)
117 TIGR02639 ClpA ATP-dependent C 99.6 9.3E-14 2E-18 173.6 22.0 220 408-648 169-429 (731)
118 KOG0731 AAA+-type ATPase conta 99.6 8.9E-14 1.9E-18 169.6 20.7 209 416-646 306-551 (774)
119 TIGR02329 propionate_PrpR prop 99.6 7.3E-14 1.6E-18 168.1 19.3 215 419-645 210-467 (526)
120 PTZ00361 26 proteosome regulat 99.6 5.2E-14 1.1E-18 165.7 17.1 213 412-648 174-424 (438)
121 COG0542 clpA ATP-binding subun 99.6 1.7E-14 3.8E-19 176.8 13.4 215 396-628 470-749 (786)
122 TIGR03345 VI_ClpV1 type VI sec 99.6 5.8E-14 1.3E-18 177.3 18.4 221 396-629 545-826 (852)
123 PRK15424 propionate catabolism 99.5 1.5E-13 3.3E-18 165.5 20.3 217 419-643 217-480 (538)
124 CHL00095 clpC Clp protease ATP 99.5 8.1E-14 1.8E-18 176.0 18.5 216 396-629 488-777 (821)
125 PRK14088 dnaA chromosomal repl 99.5 1.6E-13 3.4E-18 162.4 19.7 205 419-647 103-331 (440)
126 TIGR01817 nifA Nif-specific re 99.5 1.1E-13 2.3E-18 167.3 18.8 218 414-642 189-439 (534)
127 PRK09087 hypothetical protein; 99.5 1.4E-13 3E-18 149.5 17.4 189 419-648 19-222 (226)
128 KOG0733 Nuclear AAA ATPase (VC 99.5 1.6E-13 3.5E-18 161.4 18.5 181 419-622 188-399 (802)
129 TIGR03345 VI_ClpV1 type VI sec 99.5 5.1E-13 1.1E-17 168.9 24.5 204 408-631 174-408 (852)
130 PRK12422 chromosomal replicati 99.5 2.3E-13 4.9E-18 161.1 19.9 206 419-647 109-342 (445)
131 KOG1970 Checkpoint RAD17-RFC c 99.5 4.7E-13 1E-17 156.6 22.0 226 402-632 63-322 (634)
132 TIGR03346 chaperone_ClpB ATP-d 99.5 1.2E-13 2.6E-18 175.0 17.7 221 396-630 544-822 (852)
133 TIGR01243 CDC48 AAA family ATP 99.5 2.6E-13 5.6E-18 169.7 20.4 191 417-631 449-670 (733)
134 TIGR01242 26Sp45 26S proteasom 99.5 2E-13 4.4E-18 157.5 17.9 209 416-647 117-362 (364)
135 TIGR02974 phageshock_pspF psp 99.5 2.9E-13 6.2E-18 154.7 18.9 206 423-640 1-242 (329)
136 TIGR03689 pup_AAA proteasome A 99.5 5E-13 1.1E-17 159.7 21.5 186 412-606 173-387 (512)
137 PRK11608 pspF phage shock prot 99.5 8.4E-13 1.8E-17 150.6 22.3 210 420-641 5-250 (326)
138 TIGR00763 lon ATP-dependent pr 99.5 1.5E-13 3.2E-18 172.8 17.5 196 421-630 320-551 (775)
139 PRK14087 dnaA chromosomal repl 99.5 6.9E-13 1.5E-17 157.3 22.2 206 417-647 111-347 (450)
140 COG1224 TIP49 DNA helicase TIP 99.5 4.7E-13 1E-17 150.1 18.9 122 525-647 292-431 (450)
141 PRK14086 dnaA chromosomal repl 99.5 2E-12 4.4E-17 156.4 25.8 209 411-647 281-514 (617)
142 COG1221 PspF Transcriptional r 99.5 8.9E-14 1.9E-18 160.9 13.6 205 418-633 75-309 (403)
143 PRK05022 anaerobic nitric oxid 99.5 6.5E-13 1.4E-17 159.8 21.5 202 419-632 185-419 (509)
144 PRK11388 DNA-binding transcrip 99.5 6.1E-13 1.3E-17 164.0 21.7 213 418-645 322-568 (638)
145 PRK10820 DNA-binding transcrip 99.5 1.7E-12 3.7E-17 156.6 23.9 212 418-641 201-447 (520)
146 PF00308 Bac_DnaA: Bacterial d 99.5 4.4E-13 9.6E-18 144.9 16.6 188 419-632 6-215 (219)
147 KOG0733 Nuclear AAA ATPase (VC 99.5 3E-13 6.5E-18 159.1 16.1 175 418-614 508-711 (802)
148 PRK11034 clpA ATP-dependent Cl 99.5 2.7E-13 5.9E-18 168.8 16.4 196 421-629 458-711 (758)
149 PRK10865 protein disaggregatio 99.5 4.2E-13 9.1E-18 169.9 18.4 220 396-629 547-824 (857)
150 TIGR02639 ClpA ATP-dependent C 99.5 4.5E-13 9.8E-18 167.5 18.0 196 421-629 454-707 (731)
151 PF06068 TIP49: TIP49 C-termin 99.5 6.1E-13 1.3E-17 151.4 15.7 105 525-630 279-396 (398)
152 COG0465 HflB ATP-dependent Zn 99.5 3.8E-13 8.3E-18 161.6 14.3 205 418-646 147-388 (596)
153 TIGR02030 BchI-ChlI magnesium 99.4 3.4E-12 7.4E-17 146.2 20.5 231 420-652 3-313 (337)
154 PLN00020 ribulose bisphosphate 99.4 3.7E-12 8E-17 145.4 20.5 157 441-618 146-331 (413)
155 COG1474 CDC6 Cdc6-related prot 99.4 5.7E-12 1.2E-16 145.9 20.5 238 412-659 11-276 (366)
156 PRK13407 bchI magnesium chelat 99.4 8E-12 1.7E-16 143.0 20.8 234 416-650 3-308 (334)
157 COG3283 TyrR Transcriptional r 99.4 1.9E-12 4E-17 145.1 14.9 208 419-642 202-443 (511)
158 KOG0738 AAA+-type ATPase [Post 99.4 7E-12 1.5E-16 142.0 19.6 185 419-632 210-431 (491)
159 CHL00206 ycf2 Ycf2; Provisiona 99.4 2.9E-12 6.2E-17 165.9 18.2 202 441-648 1628-1877(2281)
160 COG0464 SpoVK ATPases of the A 99.4 4.8E-12 1E-16 151.6 18.9 208 418-647 239-482 (494)
161 KOG1942 DNA helicase, TBP-inte 99.4 1.1E-11 2.4E-16 136.0 19.0 122 525-647 297-437 (456)
162 PRK15429 formate hydrogenlyase 99.4 4.7E-12 1E-16 157.5 18.5 209 418-638 373-616 (686)
163 CHL00081 chlI Mg-protoporyphyr 99.4 7.4E-12 1.6E-16 143.7 18.1 231 419-652 15-326 (350)
164 KOG0737 AAA+-type ATPase [Post 99.4 4.2E-12 9.2E-17 143.7 15.5 191 418-631 89-309 (386)
165 TIGR02915 PEP_resp_reg putativ 99.4 2.1E-11 4.6E-16 143.6 22.1 213 419-642 137-383 (445)
166 KOG0736 Peroxisome assembly fa 99.4 5.3E-12 1.1E-16 151.9 17.0 176 418-617 669-877 (953)
167 PRK08485 DNA polymerase III su 99.4 1.8E-12 3.8E-17 137.3 11.5 125 502-630 35-172 (206)
168 PRK10733 hflB ATP-dependent me 99.4 8.9E-12 1.9E-16 153.8 19.5 209 415-646 146-390 (644)
169 TIGR02442 Cob-chelat-sub cobal 99.4 1.7E-11 3.7E-16 151.1 21.9 228 420-648 3-304 (633)
170 KOG0652 26S proteasome regulat 99.4 4.4E-12 9.5E-17 137.2 13.8 175 419-617 169-375 (424)
171 TIGR02640 gas_vesic_GvpN gas v 99.4 3.8E-11 8.3E-16 133.0 21.5 120 524-648 105-257 (262)
172 PRK05342 clpX ATP-dependent pr 99.4 9.8E-12 2.1E-16 145.9 17.5 188 423-629 73-374 (412)
173 PRK10923 glnG nitrogen regulat 99.4 3.7E-11 7.9E-16 142.6 22.1 214 419-643 136-383 (469)
174 PRK10787 DNA-binding ATP-depen 99.4 1.5E-11 3.2E-16 154.4 19.2 208 422-648 323-582 (784)
175 COG0593 DnaA ATPase involved i 99.4 1.5E-11 3.2E-16 143.0 17.8 215 410-648 79-313 (408)
176 COG0466 Lon ATP-dependent Lon 99.3 5.4E-12 1.2E-16 151.8 14.1 191 422-630 324-554 (782)
177 TIGR03015 pepcterm_ATPase puta 99.3 2.9E-11 6.2E-16 132.7 18.1 217 426-648 28-266 (269)
178 PRK11034 clpA ATP-dependent Cl 99.3 3.5E-11 7.6E-16 150.2 20.9 224 410-648 175-433 (758)
179 KOG0743 AAA+-type ATPase [Post 99.3 2.6E-11 5.7E-16 140.5 18.2 182 416-646 196-414 (457)
180 KOG0727 26S proteasome regulat 99.3 4E-11 8.8E-16 129.4 17.3 171 410-602 143-345 (408)
181 KOG0726 26S proteasome regulat 99.3 6.2E-12 1.3E-16 137.9 11.1 210 413-646 177-424 (440)
182 KOG2004 Mitochondrial ATP-depe 99.3 9.5E-12 2.1E-16 148.8 13.3 191 422-630 412-642 (906)
183 TIGR03346 chaperone_ClpB ATP-d 99.3 4E-11 8.6E-16 152.4 19.8 205 408-632 160-395 (852)
184 KOG0728 26S proteasome regulat 99.3 3.1E-11 6.6E-16 130.2 15.8 215 411-648 137-388 (404)
185 KOG0742 AAA+-type ATPase [Post 99.3 5.3E-11 1.1E-15 135.2 18.4 158 420-599 354-531 (630)
186 KOG0729 26S proteasome regulat 99.3 6.2E-12 1.3E-16 136.4 10.0 176 418-617 174-381 (435)
187 PF00004 AAA: ATPase family as 99.3 1.3E-11 2.9E-16 119.7 11.0 109 446-581 1-131 (132)
188 PRK10865 protein disaggregatio 99.3 2.1E-11 4.6E-16 154.6 15.4 205 408-632 165-400 (857)
189 PRK15115 response regulator Gl 99.3 1.7E-10 3.6E-15 136.0 21.9 214 421-645 134-381 (444)
190 PRK11361 acetoacetate metaboli 99.3 2.6E-10 5.6E-15 134.7 22.9 216 419-645 141-390 (457)
191 KOG0739 AAA+-type ATPase [Post 99.3 1.3E-11 2.8E-16 135.8 10.6 172 419-618 131-334 (439)
192 PF05673 DUF815: Protein of un 99.3 2.7E-10 5.7E-15 124.5 19.7 190 414-630 20-246 (249)
193 PF12169 DNA_pol3_gamma3: DNA 99.3 4.3E-11 9.4E-16 120.3 12.7 124 636-760 1-130 (143)
194 TIGR01243 CDC48 AAA family ATP 99.3 8.9E-11 1.9E-15 147.2 18.3 179 418-620 175-382 (733)
195 TIGR00382 clpX endopeptidase C 99.3 1E-10 2.2E-15 137.1 17.2 190 422-630 78-381 (413)
196 CHL00095 clpC Clp protease ATP 99.2 7.3E-11 1.6E-15 149.6 17.1 202 410-632 168-400 (821)
197 COG3284 AcoR Transcriptional a 99.2 4.5E-11 9.7E-16 143.1 12.7 207 425-642 317-551 (606)
198 TIGR01818 ntrC nitrogen regula 99.2 3.4E-10 7.4E-15 134.0 19.5 215 420-645 133-381 (463)
199 KOG0740 AAA+-type ATPase [Post 99.2 8.9E-11 1.9E-15 136.7 14.0 177 413-617 145-354 (428)
200 PRK05201 hslU ATP-dependent pr 99.2 2.6E-10 5.5E-15 133.0 15.5 107 524-630 249-403 (443)
201 PRK14700 recombination factor 99.2 3.3E-10 7.1E-15 126.7 15.5 139 553-691 7-168 (300)
202 KOG2680 DNA helicase TIP49, TB 99.2 7.4E-10 1.6E-14 122.2 17.4 122 525-647 289-428 (454)
203 PRK10365 transcriptional regul 99.1 1.9E-09 4.1E-14 126.7 20.9 203 421-645 139-386 (441)
204 KOG0735 AAA+-type ATPase [Post 99.1 1.1E-09 2.5E-14 131.2 18.7 177 418-617 664-868 (952)
205 TIGR00390 hslU ATP-dependent p 99.1 4.5E-10 9.7E-15 130.9 15.0 108 523-630 246-401 (441)
206 KOG0732 AAA+-type ATPase conta 99.1 8.6E-10 1.9E-14 138.5 17.9 188 418-622 262-477 (1080)
207 PRK13531 regulatory ATPase Rav 99.1 3E-09 6.5E-14 126.2 21.4 205 421-647 20-282 (498)
208 KOG1968 Replication factor C, 99.1 3E-10 6.6E-15 142.5 11.4 211 408-632 307-538 (871)
209 PF06144 DNA_pol3_delta: DNA p 99.1 1.9E-09 4E-14 110.9 15.0 164 446-631 1-172 (172)
210 cd00009 AAA The AAA+ (ATPases 99.1 2.1E-09 4.6E-14 103.8 14.1 136 424-581 1-150 (151)
211 KOG0651 26S proteasome regulat 99.0 4.3E-10 9.3E-15 124.9 8.8 178 418-617 129-339 (388)
212 COG2607 Predicted ATPase (AAA+ 99.0 9.1E-09 2E-13 111.4 18.4 190 414-630 53-278 (287)
213 KOG0730 AAA+-type ATPase [Post 99.0 1E-08 2.2E-13 123.3 18.5 214 421-656 184-424 (693)
214 KOG1514 Origin recognition com 99.0 3.7E-08 8E-13 119.0 22.5 194 423-632 398-627 (767)
215 KOG2227 Pre-initiation complex 99.0 2.1E-08 4.5E-13 116.8 19.7 211 409-630 141-376 (529)
216 PF01078 Mg_chelatase: Magnesi 99.0 1E-09 2.3E-14 117.5 7.7 133 419-562 1-157 (206)
217 PF01637 Arch_ATPase: Archaeal 99.0 1.1E-08 2.5E-13 108.0 15.5 192 423-623 1-232 (234)
218 PRK11331 5-methylcytosine-spec 99.0 3.8E-08 8.3E-13 116.1 21.0 238 420-677 174-457 (459)
219 KOG0741 AAA+-type ATPase [Post 98.9 1.9E-09 4E-14 126.0 9.0 245 290-595 141-413 (744)
220 PF00158 Sigma54_activat: Sigm 98.9 2.8E-09 6E-14 111.2 9.4 145 423-579 1-166 (168)
221 TIGR00764 lon_rel lon-related 98.9 4.2E-08 9E-13 120.8 20.9 126 523-648 216-391 (608)
222 COG1239 ChlI Mg-chelatase subu 98.9 1.7E-08 3.7E-13 116.9 15.4 175 420-598 16-234 (423)
223 PHA02244 ATPase-like protein 98.9 6.5E-08 1.4E-12 111.7 20.0 121 444-585 120-263 (383)
224 COG0714 MoxR-like ATPases [Gen 98.9 8.2E-08 1.8E-12 109.8 20.3 146 420-586 23-192 (329)
225 TIGR01650 PD_CobS cobaltochela 98.9 1E-07 2.3E-12 108.7 20.4 174 422-614 46-251 (327)
226 COG1219 ClpX ATP-dependent pro 98.9 1.3E-08 2.8E-13 113.6 12.2 189 423-630 63-364 (408)
227 PRK13765 ATP-dependent proteas 98.9 6.2E-08 1.4E-12 119.4 19.4 123 523-645 225-397 (637)
228 smart00350 MCM minichromosome 98.9 1E-07 2.2E-12 115.4 20.7 157 420-594 202-398 (509)
229 PF07724 AAA_2: AAA domain (Cd 98.9 2.2E-09 4.8E-14 112.3 5.7 101 444-565 4-131 (171)
230 KOG1051 Chaperone HSP104 and r 98.9 8.1E-09 1.8E-13 129.2 11.4 148 400-565 545-712 (898)
231 PF14840 DNA_pol3_delt_C: Proc 98.8 2.3E-08 4.9E-13 99.8 11.6 106 653-759 1-120 (125)
232 COG0542 clpA ATP-binding subun 98.8 4.9E-08 1.1E-12 121.0 16.3 204 408-632 157-392 (786)
233 TIGR00368 Mg chelatase-related 98.8 1E-07 2.2E-12 114.8 18.3 156 418-587 189-395 (499)
234 TIGR02031 BchD-ChlD magnesium 98.8 1.2E-07 2.6E-12 116.5 18.7 200 430-648 4-258 (589)
235 smart00763 AAA_PrkA PrkA AAA d 98.8 1.1E-07 2.4E-12 109.6 16.8 196 418-614 47-348 (361)
236 PF14532 Sigma54_activ_2: Sigm 98.8 3.3E-08 7.1E-13 99.2 10.8 126 424-582 1-137 (138)
237 KOG0744 AAA+-type ATPase [Post 98.8 6.2E-08 1.3E-12 108.5 13.0 133 444-597 178-341 (423)
238 PF07728 AAA_5: AAA domain (dy 98.7 1.3E-08 2.8E-13 101.4 6.0 115 445-575 1-139 (139)
239 PTZ00111 DNA replication licen 98.7 1.8E-06 4E-11 108.8 25.2 141 421-577 450-636 (915)
240 COG0606 Predicted ATPase with 98.7 4.7E-08 1E-12 114.7 8.7 136 419-562 177-334 (490)
241 KOG0735 AAA+-type ATPase [Post 98.6 1.2E-06 2.6E-11 106.0 18.0 187 443-647 431-647 (952)
242 smart00382 AAA ATPases associa 98.6 6.3E-07 1.4E-11 85.4 11.8 119 444-576 3-139 (148)
243 PRK09862 putative ATP-dependen 98.5 2E-06 4.3E-11 103.7 17.3 153 418-584 188-389 (506)
244 PF07726 AAA_3: ATPase family 98.5 1.9E-07 4E-12 93.5 6.4 111 446-576 2-130 (131)
245 COG1220 HslU ATP-dependent pro 98.5 2.6E-06 5.6E-11 96.3 16.0 123 525-647 251-432 (444)
246 PF05621 TniB: Bacterial TniB 98.5 6.6E-06 1.4E-10 93.0 19.0 207 423-644 36-285 (302)
247 KOG2170 ATPase of the AAA+ sup 98.5 1.5E-06 3.4E-11 97.0 12.9 130 422-565 83-226 (344)
248 KOG0745 Putative ATP-dependent 98.4 2.6E-06 5.6E-11 98.7 14.5 121 445-585 228-388 (564)
249 PF00931 NB-ARC: NB-ARC domain 98.3 1.5E-05 3.3E-10 88.3 17.1 186 427-625 2-202 (287)
250 PRK08116 hypothetical protein; 98.3 1.9E-06 4.1E-11 96.5 9.2 146 413-585 77-251 (268)
251 PRK12377 putative replication 98.3 2.8E-06 6E-11 94.2 10.1 124 413-563 66-205 (248)
252 COG4650 RtcR Sigma54-dependent 98.3 5.3E-05 1.2E-09 84.3 19.7 207 430-647 197-442 (531)
253 PF13173 AAA_14: AAA domain 98.3 5.1E-06 1.1E-10 82.4 10.2 120 444-588 3-127 (128)
254 KOG0736 Peroxisome assembly fa 98.3 2.1E-05 4.4E-10 96.5 17.1 181 419-623 399-603 (953)
255 KOG0478 DNA replication licens 98.2 1.1E-05 2.3E-10 97.8 14.0 159 407-586 419-616 (804)
256 PRK07952 DNA replication prote 98.2 6.3E-06 1.4E-10 91.2 11.2 144 412-582 63-233 (244)
257 PRK13406 bchD magnesium chelat 98.2 6.6E-05 1.4E-09 92.4 20.2 204 426-648 8-250 (584)
258 PRK15455 PrkA family serine pr 98.1 0.00011 2.3E-09 89.3 18.8 162 524-695 255-456 (644)
259 COG3267 ExeA Type II secretory 98.1 0.00017 3.7E-09 79.7 18.5 188 426-628 36-248 (269)
260 COG1241 MCM2 Predicted ATPase 98.0 0.00012 2.6E-09 90.8 18.2 144 420-580 285-465 (682)
261 PRK06526 transposase; Provisio 98.0 3E-05 6.5E-10 86.4 11.0 101 444-564 99-201 (254)
262 PF05729 NACHT: NACHT domain 98.0 4.3E-05 9.4E-10 76.8 10.1 150 445-597 2-164 (166)
263 PF13401 AAA_22: AAA domain; P 97.9 2.5E-05 5.4E-10 76.3 7.7 111 444-563 5-125 (131)
264 PRK04841 transcriptional regul 97.9 0.0013 2.9E-08 84.4 25.0 200 417-626 10-226 (903)
265 PRK08181 transposase; Validate 97.9 8.4E-05 1.8E-09 83.5 12.1 100 435-564 101-209 (269)
266 KOG0482 DNA replication licens 97.9 0.00081 1.8E-08 79.7 20.2 216 410-647 331-637 (721)
267 PRK06921 hypothetical protein; 97.9 5.9E-05 1.3E-09 84.5 10.4 27 443-469 117-143 (266)
268 KOG0741 AAA+-type ATPase [Post 97.9 0.00021 4.4E-09 85.0 14.8 153 445-629 540-719 (744)
269 PF12774 AAA_6: Hydrolytic ATP 97.8 0.001 2.2E-08 73.4 19.1 139 429-602 21-183 (231)
270 PF12775 AAA_7: P-loop contain 97.8 6.6E-05 1.4E-09 84.4 9.8 133 444-597 34-194 (272)
271 KOG0480 DNA replication licens 97.8 0.00049 1.1E-08 83.5 17.3 142 419-578 343-522 (764)
272 PRK06835 DNA replication prote 97.8 0.00017 3.8E-09 83.2 13.1 111 444-583 184-317 (329)
273 PRK08939 primosomal protein Dn 97.8 8.5E-05 1.8E-09 84.9 9.9 131 414-564 120-261 (306)
274 PRK04132 replication factor C 97.8 1.2E-05 2.6E-10 101.8 3.4 52 407-459 5-56 (846)
275 KOG0477 DNA replication licens 97.8 0.00025 5.5E-09 85.4 14.0 232 422-670 450-755 (854)
276 PHA00729 NTP-binding motif con 97.8 0.00013 2.8E-09 80.0 10.6 128 435-594 10-138 (226)
277 PF13191 AAA_16: AAA ATPase do 97.8 3.7E-05 8E-10 79.2 5.8 49 422-470 1-51 (185)
278 KOG0481 DNA replication licens 97.7 0.0017 3.8E-08 77.1 19.7 152 406-579 320-509 (729)
279 PLN03210 Resistant to P. syrin 97.7 0.0014 3.1E-08 87.0 20.9 193 418-621 181-391 (1153)
280 TIGR02688 conserved hypothetic 97.7 0.0012 2.5E-08 78.3 17.7 114 414-563 184-312 (449)
281 COG1618 Predicted nucleotide k 97.7 0.00059 1.3E-08 71.0 13.5 147 444-597 6-173 (179)
282 COG5271 MDN1 AAA ATPase contai 97.7 0.00014 3E-09 93.8 9.6 142 433-595 1533-1702(4600)
283 COG1484 DnaC DNA replication p 97.6 0.0003 6.5E-09 78.5 11.3 27 442-468 104-130 (254)
284 PF03266 NTPase_1: NTPase; In 97.6 0.00011 2.5E-09 76.9 7.0 64 524-590 95-165 (168)
285 PF00493 MCM: MCM2/3/5 family 97.6 2.9E-05 6.4E-10 89.4 2.5 150 407-578 14-201 (331)
286 PHA02774 E1; Provisional 97.6 0.00047 1E-08 84.0 12.5 138 429-602 420-587 (613)
287 PF01695 IstB_IS21: IstB-like 97.6 0.00013 2.9E-09 77.0 6.7 102 442-563 46-149 (178)
288 PF00910 RNA_helicase: RNA hel 97.5 0.00021 4.6E-09 69.1 7.3 75 446-550 1-79 (107)
289 PF14516 AAA_35: AAA-like doma 97.5 0.015 3.2E-07 67.4 22.6 209 424-642 14-254 (331)
290 PRK04296 thymidine kinase; Pro 97.5 0.0011 2.3E-08 70.7 11.9 111 444-562 3-114 (190)
291 TIGR01618 phage_P_loop phage n 97.5 0.00028 6E-09 77.2 7.6 86 440-537 9-94 (220)
292 COG1373 Predicted ATPase (AAA+ 97.4 0.0077 1.7E-07 71.5 19.6 120 445-591 39-162 (398)
293 PRK09183 transposase/IS protei 97.4 0.0006 1.3E-08 76.2 9.3 95 444-564 103-206 (259)
294 KOG2228 Origin recognition com 97.3 0.0094 2E-07 68.4 18.2 71 526-596 139-219 (408)
295 KOG2543 Origin recognition com 97.3 0.0018 3.8E-08 75.1 12.6 213 421-638 6-240 (438)
296 PF13604 AAA_30: AAA domain; P 97.3 0.00071 1.5E-08 72.4 8.9 95 444-562 19-129 (196)
297 COG5271 MDN1 AAA ATPase contai 97.3 0.002 4.2E-08 84.0 13.0 152 445-615 890-1061(4600)
298 PF06309 Torsin: Torsin; Inte 97.3 0.0004 8.7E-09 69.7 5.7 50 421-470 25-80 (127)
299 PHA02624 large T antigen; Prov 97.3 0.0012 2.7E-08 80.7 10.7 38 433-470 421-458 (647)
300 cd01120 RecA-like_NTPases RecA 97.2 0.0018 3.9E-08 64.5 9.9 23 446-468 2-24 (165)
301 PF07693 KAP_NTPase: KAP famil 97.2 0.014 3.1E-07 66.1 18.3 43 428-470 3-47 (325)
302 PRK12723 flagellar biosynthesi 97.1 0.0032 6.9E-08 74.4 11.7 145 443-597 174-336 (388)
303 PRK13695 putative NTPase; Prov 97.0 0.01 2.2E-07 61.9 12.8 69 523-594 95-170 (174)
304 PF05970 PIF1: PIF1-like helic 97.0 0.0013 2.8E-08 76.8 6.8 43 426-469 6-48 (364)
305 PF00448 SRP54: SRP54-type pro 96.9 0.005 1.1E-07 66.3 10.2 140 443-589 1-156 (196)
306 PF09848 DUF2075: Uncharacteri 96.9 0.0012 2.6E-08 76.7 5.7 24 444-467 2-25 (352)
307 PF10443 RNA12: RNA12 protein; 96.9 0.018 3.9E-07 68.4 15.1 149 524-679 148-336 (431)
308 PF10236 DAP3: Mitochondrial r 96.8 0.022 4.8E-07 65.5 15.2 47 577-623 258-307 (309)
309 PRK10536 hypothetical protein; 96.8 0.013 2.7E-07 65.8 12.8 44 420-466 54-97 (262)
310 PRK11889 flhF flagellar biosyn 96.8 0.022 4.8E-07 67.4 15.0 144 443-597 241-401 (436)
311 KOG0922 DEAH-box RNA helicase 96.8 0.0081 1.8E-07 73.7 11.6 52 512-563 151-204 (674)
312 KOG3347 Predicted nucleotide k 96.7 0.0025 5.4E-08 65.7 5.8 28 443-470 7-34 (176)
313 PRK14974 cell division protein 96.7 0.017 3.7E-07 67.1 13.0 27 443-469 140-166 (336)
314 TIGR01448 recD_rel helicase, p 96.7 0.0068 1.5E-07 77.0 10.5 105 444-561 339-450 (720)
315 PTZ00202 tuzin; Provisional 96.7 0.032 6.9E-07 66.7 15.1 53 416-468 257-311 (550)
316 PF08542 Rep_fac_C: Replicatio 96.6 0.028 6.1E-07 52.3 11.9 87 648-757 3-89 (89)
317 PF13479 AAA_24: AAA domain 96.6 0.0036 7.7E-08 67.8 6.6 75 444-536 4-80 (213)
318 PRK05703 flhF flagellar biosyn 96.6 0.038 8.3E-07 66.2 15.7 135 444-586 222-370 (424)
319 TIGR01447 recD exodeoxyribonuc 96.6 0.0082 1.8E-07 74.5 10.4 36 524-562 259-294 (586)
320 PF05272 VirE: Virulence-assoc 96.6 0.011 2.5E-07 63.7 10.2 102 443-582 52-169 (198)
321 PF08298 AAA_PrkA: PrkA AAA do 96.6 0.048 1E-06 63.5 15.7 49 419-467 58-112 (358)
322 TIGR02768 TraA_Ti Ti-type conj 96.6 0.012 2.5E-07 75.1 11.6 101 444-568 369-480 (744)
323 PRK14722 flhF flagellar biosyn 96.5 0.017 3.7E-07 68.0 11.8 25 443-467 137-161 (374)
324 PF03969 AFG1_ATPase: AFG1-lik 96.5 0.0043 9.4E-08 72.7 6.8 127 441-583 60-201 (362)
325 PRK09435 membrane ATPase/prote 96.5 0.11 2.3E-06 60.6 17.6 30 440-469 53-82 (332)
326 PRK00771 signal recognition pa 96.4 0.26 5.7E-06 59.4 20.7 28 442-469 94-121 (437)
327 PRK10875 recD exonuclease V su 96.3 0.013 2.9E-07 73.0 10.0 35 525-562 266-300 (615)
328 PRK13889 conjugal transfer rel 96.3 0.011 2.4E-07 76.9 9.7 104 445-561 364-468 (988)
329 KOG1051 Chaperone HSP104 and r 96.3 0.023 4.9E-07 72.9 11.5 179 420-614 185-385 (898)
330 cd03281 ABC_MSH5_euk MutS5 hom 96.2 0.011 2.4E-07 64.2 7.5 22 444-465 30-51 (213)
331 smart00487 DEXDc DEAD-like hel 96.2 0.0056 1.2E-07 62.1 4.9 41 524-564 129-170 (201)
332 PRK08118 topology modulation p 96.2 0.098 2.1E-06 54.8 14.1 26 446-471 4-29 (167)
333 cd03283 ABC_MutS-like MutS-lik 96.2 0.015 3.2E-07 62.7 8.2 24 444-467 26-49 (199)
334 PF13207 AAA_17: AAA domain; P 96.2 0.0043 9.2E-08 60.1 3.6 26 445-470 1-26 (121)
335 PRK13826 Dtr system oriT relax 96.2 0.023 5.1E-07 74.5 11.3 95 444-559 398-503 (1102)
336 PRK12724 flagellar biosynthesi 96.2 0.039 8.5E-07 65.9 12.0 150 443-598 223-384 (432)
337 COG4178 ABC-type uncharacteriz 96.1 0.013 2.8E-07 72.2 8.3 119 443-565 419-575 (604)
338 cd00046 DEXDc DEAD-like helica 96.1 0.015 3.4E-07 55.3 7.0 25 445-469 2-26 (144)
339 PRK06762 hypothetical protein; 96.1 0.026 5.6E-07 58.1 9.1 25 443-467 2-26 (166)
340 KOG1808 AAA ATPase containing 96.1 0.032 6.9E-07 75.7 11.8 144 431-596 430-599 (1856)
341 COG4088 Predicted nucleotide k 96.1 0.015 3.3E-07 62.9 7.3 26 445-470 3-28 (261)
342 COG2842 Uncharacterized ATPase 96.0 0.019 4.2E-07 65.1 8.4 197 419-632 70-278 (297)
343 TIGR01359 UMP_CMP_kin_fam UMP- 96.0 0.096 2.1E-06 54.6 13.1 25 446-470 2-26 (183)
344 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.061 1.3E-06 54.7 11.1 101 443-566 26-129 (144)
345 cd03247 ABCC_cytochrome_bd The 96.0 0.024 5.2E-07 59.3 8.3 45 523-567 115-160 (178)
346 COG1419 FlhF Flagellar GTP-bin 95.9 0.14 3E-06 60.8 15.0 68 523-590 280-355 (407)
347 COG1119 ModF ABC-type molybden 95.9 0.021 4.5E-07 63.4 7.8 54 523-576 188-245 (257)
348 PRK12727 flagellar biosynthesi 95.9 0.083 1.8E-06 64.7 13.4 26 443-468 350-375 (559)
349 cd03223 ABCD_peroxisomal_ALDP 95.9 0.033 7.2E-07 57.9 8.8 41 523-565 108-149 (166)
350 cd01124 KaiC KaiC is a circadi 95.9 0.032 6.9E-07 58.0 8.6 22 446-467 2-23 (187)
351 TIGR01613 primase_Cterm phage/ 95.9 0.14 3.1E-06 58.4 14.6 134 420-582 47-203 (304)
352 PRK14532 adenylate kinase; Pro 95.9 0.15 3.2E-06 53.7 13.7 26 446-471 3-28 (188)
353 PF05707 Zot: Zonular occluden 95.8 0.022 4.8E-07 60.8 7.3 60 524-583 79-146 (193)
354 cd01128 rho_factor Transcripti 95.8 0.01 2.2E-07 66.3 4.9 26 445-470 18-43 (249)
355 PF12780 AAA_8: P-loop contain 95.7 0.16 3.5E-06 57.4 14.2 152 422-598 9-212 (268)
356 COG2909 MalT ATP-dependent tra 95.7 0.4 8.6E-06 61.1 18.6 182 431-618 25-226 (894)
357 cd00561 CobA_CobO_BtuR ATP:cor 95.7 0.033 7.2E-07 58.3 8.0 52 522-576 93-147 (159)
358 cd03243 ABC_MutS_homologs The 95.7 0.034 7.3E-07 59.5 8.3 23 444-466 30-52 (202)
359 TIGR02237 recomb_radB DNA repa 95.7 0.045 9.7E-07 58.5 9.2 26 443-468 12-37 (209)
360 cd03228 ABCC_MRP_Like The MRP 95.7 0.034 7.4E-07 57.9 8.0 45 523-567 113-158 (171)
361 PRK13900 type IV secretion sys 95.7 0.2 4.4E-06 58.3 15.1 45 422-469 142-186 (332)
362 COG1643 HrpA HrpA-like helicas 95.7 0.04 8.6E-07 70.7 10.0 53 512-564 150-205 (845)
363 PF01745 IPT: Isopentenyl tran 95.7 0.17 3.8E-06 55.4 13.4 145 445-616 3-161 (233)
364 PRK05986 cob(I)alamin adenolsy 95.7 0.018 4E-07 61.9 6.0 122 444-565 23-159 (191)
365 COG1067 LonB Predicted ATP-dep 95.7 0.1 2.2E-06 65.5 13.2 233 412-647 95-398 (647)
366 PF00519 PPV_E1_C: Papillomavi 95.6 0.051 1.1E-06 63.9 9.8 115 430-583 249-383 (432)
367 COG3899 Predicted ATPase [Gene 95.6 0.59 1.3E-05 60.9 20.3 106 523-630 153-265 (849)
368 KOG0923 mRNA splicing factor A 95.6 0.074 1.6E-06 65.4 11.1 52 512-563 366-419 (902)
369 cd00267 ABC_ATPase ABC (ATP-bi 95.6 0.056 1.2E-06 55.3 9.0 111 444-568 26-144 (157)
370 cd02021 GntK Gluconate kinase 95.6 0.039 8.4E-07 55.8 7.6 25 446-470 2-26 (150)
371 cd01428 ADK Adenylate kinase ( 95.5 0.1 2.2E-06 54.7 10.9 26 446-471 2-27 (194)
372 cd03115 SRP The signal recogni 95.5 0.21 4.5E-06 51.8 13.2 25 445-469 2-26 (173)
373 cd03282 ABC_MSH4_euk MutS4 hom 95.5 0.04 8.7E-07 59.7 8.1 23 444-466 30-52 (204)
374 PRK12726 flagellar biosynthesi 95.5 0.21 4.5E-06 59.2 14.3 108 443-560 206-324 (407)
375 PF02562 PhoH: PhoH-like prote 95.5 0.025 5.5E-07 61.5 6.4 35 525-562 120-154 (205)
376 PRK07261 topology modulation p 95.5 0.12 2.6E-06 54.3 11.2 25 446-470 3-27 (171)
377 cd01393 recA_like RecA is a b 95.5 0.12 2.5E-06 55.9 11.4 25 443-467 19-43 (226)
378 PF04665 Pox_A32: Poxvirus A32 95.5 0.54 1.2E-05 52.6 16.7 77 524-605 98-175 (241)
379 PRK14528 adenylate kinase; Pro 95.5 0.095 2.1E-06 55.7 10.5 27 445-471 3-29 (186)
380 TIGR02858 spore_III_AA stage I 95.4 0.091 2E-06 59.5 10.8 26 444-469 112-137 (270)
381 cd01123 Rad51_DMC1_radA Rad51_ 95.4 0.071 1.5E-06 57.8 9.7 75 443-532 19-93 (235)
382 cd03216 ABC_Carb_Monos_I This 95.4 0.064 1.4E-06 55.6 8.9 115 443-566 26-144 (163)
383 CHL00195 ycf46 Ycf46; Provisio 95.4 0.34 7.4E-06 59.2 16.2 119 525-645 82-205 (489)
384 PRK13709 conjugal transfer nic 95.4 0.075 1.6E-06 72.9 11.6 108 444-561 985-1097(1747)
385 PRK14737 gmk guanylate kinase; 95.4 0.22 4.7E-06 53.3 12.9 25 443-467 4-28 (186)
386 cd03227 ABC_Class2 ABC-type Cl 95.3 0.085 1.8E-06 54.7 9.4 113 444-565 22-142 (162)
387 PF13671 AAA_33: AAA domain; P 95.3 0.013 2.7E-07 58.3 3.2 25 445-469 1-25 (143)
388 PRK10867 signal recognition pa 95.3 0.71 1.5E-05 55.7 18.4 27 443-469 100-126 (433)
389 TIGR01425 SRP54_euk signal rec 95.3 0.67 1.5E-05 55.8 18.1 136 443-587 100-253 (429)
390 PF00437 T2SE: Type II/IV secr 95.3 0.052 1.1E-06 60.5 8.4 52 419-470 102-154 (270)
391 PRK06547 hypothetical protein; 95.3 0.16 3.5E-06 53.6 11.6 31 440-470 12-42 (172)
392 PRK06731 flhF flagellar biosyn 95.3 0.076 1.7E-06 60.1 9.6 135 444-587 76-225 (270)
393 PRK10416 signal recognition pa 95.3 0.23 5E-06 57.5 13.6 27 443-469 114-140 (318)
394 cd03287 ABC_MSH3_euk MutS3 hom 95.3 0.12 2.5E-06 57.0 10.7 108 444-565 32-155 (222)
395 COG1124 DppF ABC-type dipeptid 95.2 0.09 2E-06 58.4 9.6 53 524-577 159-214 (252)
396 cd01129 PulE-GspE PulE/GspE Th 95.2 0.15 3.1E-06 57.5 11.6 51 417-469 56-106 (264)
397 cd03246 ABCC_Protease_Secretio 95.2 0.059 1.3E-06 56.2 8.0 43 523-565 113-157 (173)
398 cd03222 ABC_RNaseL_inhibitor T 95.2 0.13 2.8E-06 54.7 10.4 104 443-565 25-133 (177)
399 TIGR03878 thermo_KaiC_2 KaiC d 95.2 0.073 1.6E-06 59.6 9.0 24 443-466 36-59 (259)
400 KOG0479 DNA replication licens 95.2 0.072 1.6E-06 64.8 9.3 150 408-578 292-478 (818)
401 PF13086 AAA_11: AAA domain; P 95.2 0.017 3.8E-07 61.1 3.9 23 445-467 19-41 (236)
402 TIGR00064 ftsY signal recognit 95.2 0.23 4.9E-06 56.3 13.0 26 443-468 72-97 (272)
403 PRK04220 2-phosphoglycerate ki 95.2 0.14 2.9E-06 58.9 11.1 36 435-470 84-119 (301)
404 PRK12338 hypothetical protein; 95.2 0.13 2.9E-06 59.4 11.2 28 443-470 4-31 (319)
405 TIGR00708 cobA cob(I)alamin ad 95.2 0.056 1.2E-06 57.4 7.5 65 509-576 82-149 (173)
406 cd03213 ABCG_EPDR ABCG transpo 95.2 0.042 9.2E-07 58.5 6.7 43 523-565 128-172 (194)
407 COG1936 Predicted nucleotide k 95.1 0.024 5.3E-07 59.9 4.7 24 446-470 3-26 (180)
408 PF00488 MutS_V: MutS domain V 95.1 0.087 1.9E-06 58.4 9.3 110 444-565 44-167 (235)
409 PRK14721 flhF flagellar biosyn 95.1 0.054 1.2E-06 64.8 8.1 25 443-467 191-215 (420)
410 PRK06067 flagellar accessory p 95.1 0.099 2.2E-06 57.1 9.6 24 443-466 25-48 (234)
411 TIGR01967 DEAH_box_HrpA ATP-de 95.1 0.11 2.4E-06 69.4 11.6 36 428-466 70-105 (1283)
412 cd03280 ABC_MutS2 MutS2 homolo 95.1 0.083 1.8E-06 56.6 8.8 22 444-465 29-50 (200)
413 cd01131 PilT Pilus retraction 95.1 0.14 3E-06 55.0 10.3 25 445-469 3-27 (198)
414 PRK00131 aroK shikimate kinase 95.1 0.022 4.7E-07 58.3 4.0 28 443-470 4-31 (175)
415 TIGR02203 MsbA_lipidA lipid A 95.0 0.038 8.2E-07 67.9 6.8 42 524-565 487-529 (571)
416 PF01443 Viral_helicase1: Vira 95.0 0.042 9.2E-07 59.1 6.3 22 446-467 1-22 (234)
417 PRK06995 flhF flagellar biosyn 95.0 0.23 5E-06 60.5 13.0 26 443-468 256-281 (484)
418 TIGR02760 TraI_TIGR conjugativ 95.0 0.16 3.5E-06 71.0 13.2 38 523-560 528-565 (1960)
419 PRK14712 conjugal transfer nic 95.0 0.16 3.5E-06 69.1 12.6 99 444-561 853-965 (1623)
420 cd03230 ABC_DR_subfamily_A Thi 95.0 0.067 1.5E-06 55.8 7.5 43 523-565 112-156 (173)
421 PRK00300 gmk guanylate kinase; 95.0 0.12 2.6E-06 54.9 9.5 26 443-468 5-30 (205)
422 PRK14723 flhF flagellar biosyn 94.9 0.085 1.8E-06 67.1 9.5 151 443-600 185-350 (767)
423 PRK12337 2-phosphoglycerate ki 94.9 0.17 3.7E-06 61.1 11.5 34 437-470 249-282 (475)
424 COG2804 PulE Type II secretory 94.9 0.13 2.8E-06 62.3 10.5 56 414-471 231-286 (500)
425 PRK09376 rho transcription ter 94.9 0.024 5.2E-07 67.0 4.3 25 446-470 172-196 (416)
426 TIGR03574 selen_PSTK L-seryl-t 94.9 0.052 1.1E-06 60.0 6.7 24 446-469 2-25 (249)
427 smart00534 MUTSac ATPase domai 94.9 0.045 9.8E-07 57.9 5.9 20 446-465 2-21 (185)
428 PRK05800 cobU adenosylcobinami 94.8 0.1 2.3E-06 55.0 8.4 24 445-468 3-26 (170)
429 cd01878 HflX HflX subfamily. 94.8 0.57 1.2E-05 49.6 14.1 23 444-466 42-64 (204)
430 PRK11176 lipid transporter ATP 94.7 0.064 1.4E-06 66.2 7.7 42 524-565 498-540 (582)
431 cd02020 CMPK Cytidine monophos 94.7 0.46 1E-05 47.2 12.5 25 446-470 2-26 (147)
432 PF01926 MMR_HSR1: 50S ribosom 94.7 0.14 3E-06 49.5 8.4 106 446-559 2-114 (116)
433 cd03278 ABC_SMC_barmotin Barmo 94.7 0.16 3.5E-06 54.5 9.7 42 524-565 135-177 (197)
434 PHA02530 pseT polynucleotide k 94.7 0.21 4.5E-06 56.4 11.1 24 444-467 3-26 (300)
435 TIGR01069 mutS2 MutS2 family p 94.7 0.37 8.1E-06 62.0 14.5 23 444-466 323-345 (771)
436 PF13238 AAA_18: AAA domain; P 94.7 0.026 5.6E-07 54.6 3.3 22 446-467 1-22 (129)
437 PRK11664 ATP-dependent RNA hel 94.7 0.27 5.9E-06 63.6 13.2 31 428-461 8-38 (812)
438 PRK11823 DNA repair protein Ra 94.7 0.091 2E-06 63.4 8.5 26 443-468 80-105 (446)
439 cd03284 ABC_MutS1 MutS1 homolo 94.7 0.12 2.6E-06 56.4 8.7 23 444-466 31-53 (216)
440 cd03286 ABC_MSH6_euk MutS6 hom 94.6 0.087 1.9E-06 57.8 7.5 111 443-565 30-154 (218)
441 cd03229 ABC_Class3 This class 94.6 0.11 2.3E-06 54.6 7.9 44 523-566 117-163 (178)
442 TIGR00767 rho transcription te 94.6 0.049 1.1E-06 64.7 5.7 27 444-470 169-195 (415)
443 cd03214 ABC_Iron-Siderophores_ 94.6 0.07 1.5E-06 56.0 6.4 44 523-566 114-160 (180)
444 COG4619 ABC-type uncharacteriz 94.5 0.22 4.9E-06 52.9 9.7 24 445-468 31-54 (223)
445 COG2805 PilT Tfp pilus assembl 94.5 0.63 1.4E-05 53.4 14.0 27 445-471 127-153 (353)
446 cd01121 Sms Sms (bacterial rad 94.5 0.19 4.2E-06 59.3 10.4 25 444-468 83-107 (372)
447 PRK08533 flagellar accessory p 94.4 0.14 3E-06 56.4 8.6 25 443-467 24-48 (230)
448 PLN03187 meiotic recombination 94.4 0.2 4.3E-06 58.6 10.3 61 442-517 125-185 (344)
449 PRK00091 miaA tRNA delta(2)-is 94.4 0.37 8.1E-06 55.6 12.3 27 444-470 5-31 (307)
450 PRK11131 ATP-dependent RNA hel 94.4 0.26 5.7E-06 65.9 12.4 36 428-466 77-112 (1294)
451 TIGR00959 ffh signal recogniti 94.4 0.46 9.9E-06 57.3 13.5 26 443-468 99-124 (428)
452 TIGR02236 recomb_radA DNA repa 94.4 0.24 5.2E-06 56.6 10.7 60 442-516 94-153 (310)
453 PF13245 AAA_19: Part of AAA d 94.4 0.053 1.1E-06 49.9 4.3 24 444-467 11-35 (76)
454 cd01394 radB RadB. The archaea 94.3 0.25 5.5E-06 53.2 10.2 26 443-468 19-44 (218)
455 PRK04301 radA DNA repair and r 94.3 0.2 4.3E-06 57.7 9.9 59 443-516 102-160 (317)
456 COG3910 Predicted ATPase [Gene 94.3 0.37 8E-06 52.1 10.8 43 523-565 145-189 (233)
457 cd03238 ABC_UvrA The excision 94.3 0.15 3.2E-06 54.2 8.0 41 525-565 108-150 (176)
458 cd01852 AIG1 AIG1 (avrRpt2-ind 94.2 1.3 2.8E-05 47.0 15.1 114 445-561 2-125 (196)
459 cd04140 ARHI_like ARHI subfami 94.2 0.44 9.6E-06 48.5 11.1 20 446-465 4-23 (165)
460 PRK09361 radB DNA repair and r 94.2 0.25 5.5E-06 53.5 9.8 25 443-467 23-47 (225)
461 cd04101 RabL4 RabL4 (Rab-like4 94.2 0.31 6.8E-06 49.1 9.9 20 446-465 3-22 (164)
462 TIGR02238 recomb_DMC1 meiotic 94.2 0.23 5.1E-06 57.3 10.0 59 443-516 96-154 (313)
463 TIGR03499 FlhF flagellar biosy 94.1 0.22 4.8E-06 56.5 9.7 26 443-468 194-219 (282)
464 cd03226 ABC_cobalt_CbiO_domain 94.1 0.11 2.4E-06 55.4 6.9 43 524-566 144-188 (205)
465 PRK03839 putative kinase; Prov 94.1 0.038 8.3E-07 57.8 3.3 26 446-471 3-28 (180)
466 cd04177 RSR1 RSR1 subgroup. R 94.1 0.35 7.7E-06 49.4 10.2 23 445-467 3-25 (168)
467 cd01130 VirB11-like_ATPase Typ 94.1 1.4 3.1E-05 46.7 15.0 39 427-468 12-50 (186)
468 cd04106 Rab23_lke Rab23-like s 94.1 0.24 5.2E-06 49.8 8.8 21 446-466 3-23 (162)
469 TIGR02012 tigrfam_recA protein 94.1 0.088 1.9E-06 61.0 6.3 24 444-467 56-79 (321)
470 cd00544 CobU Adenosylcobinamid 94.0 0.077 1.7E-06 56.0 5.3 21 446-466 2-22 (169)
471 TIGR01970 DEAH_box_HrpB ATP-de 94.0 0.55 1.2E-05 60.9 13.9 31 429-462 6-36 (819)
472 PHA00350 putative assembly pro 94.0 0.1 2.3E-06 61.9 6.9 60 524-583 81-165 (399)
473 TIGR02868 CydC thiol reductant 94.0 0.1 2.2E-06 63.8 7.1 40 524-563 488-528 (529)
474 PLN02840 tRNA dimethylallyltra 94.0 1 2.3E-05 54.0 15.1 28 443-470 21-48 (421)
475 cd03244 ABCC_MRP_domain2 Domai 93.9 0.11 2.4E-06 56.0 6.3 44 524-567 157-201 (221)
476 cd03369 ABCC_NFT1 Domain 2 of 93.8 0.21 4.5E-06 53.4 8.3 44 524-567 143-187 (207)
477 cd04124 RabL2 RabL2 subfamily. 93.8 0.16 3.5E-06 51.7 7.1 21 446-466 3-23 (161)
478 PRK06696 uridine kinase; Valid 93.8 0.1 2.2E-06 56.8 5.9 43 427-469 4-48 (223)
479 cd03285 ABC_MSH2_euk MutS2 hom 93.8 0.27 5.9E-06 53.9 9.2 24 443-466 30-53 (222)
480 cd00464 SK Shikimate kinase (S 93.7 0.054 1.2E-06 54.5 3.5 25 446-470 2-26 (154)
481 cd03237 ABC_RNaseL_inhibitor_d 93.7 0.12 2.5E-06 57.5 6.3 83 523-606 132-223 (246)
482 PRK11174 cysteine/glutathione 93.7 0.11 2.5E-06 64.2 7.0 42 524-565 503-545 (588)
483 cd04119 RJL RJL (RabJ-Like) su 93.7 0.71 1.5E-05 46.3 11.4 21 446-466 3-23 (168)
484 PRK05973 replicative DNA helic 93.7 0.23 5.1E-06 55.2 8.5 25 443-467 64-88 (237)
485 PLN02772 guanylate kinase 93.6 0.52 1.1E-05 56.0 11.7 24 444-467 136-159 (398)
486 PRK13947 shikimate kinase; Pro 93.6 0.057 1.2E-06 55.6 3.4 27 445-471 3-29 (171)
487 PRK12608 transcription termina 93.6 0.12 2.6E-06 61.0 6.3 25 446-470 136-160 (380)
488 cd00227 CPT Chloramphenicol (C 93.6 0.066 1.4E-06 56.0 3.9 27 444-470 3-29 (175)
489 PF02367 UPF0079: Uncharacteri 93.6 0.4 8.7E-06 48.3 9.2 31 441-471 13-43 (123)
490 TIGR00150 HI0065_YjeE ATPase, 93.6 0.15 3.3E-06 52.0 6.3 30 441-470 20-49 (133)
491 TIGR01360 aden_kin_iso1 adenyl 93.6 0.063 1.4E-06 55.8 3.7 27 444-470 4-30 (188)
492 TIGR01313 therm_gnt_kin carboh 93.6 0.046 1E-06 56.1 2.6 24 446-469 1-24 (163)
493 cd03215 ABC_Carb_Monos_II This 93.5 0.13 2.9E-06 54.0 6.1 43 523-565 121-165 (182)
494 PRK13808 adenylate kinase; Pro 93.5 0.84 1.8E-05 53.3 12.9 26 446-471 3-28 (333)
495 PF00406 ADK: Adenylate kinase 93.5 0.35 7.6E-06 49.2 8.9 23 448-470 1-23 (151)
496 cd03239 ABC_SMC_head The struc 93.5 0.57 1.2E-05 49.7 10.7 43 523-565 115-159 (178)
497 TIGR02782 TrbB_P P-type conjug 93.5 0.65 1.4E-05 53.3 12.0 39 427-468 119-157 (299)
498 PRK14529 adenylate kinase; Pro 93.5 0.31 6.8E-06 53.8 9.1 27 446-472 3-29 (223)
499 cd03279 ABC_sbcCD SbcCD and ot 93.5 0.41 8.9E-06 51.8 9.9 42 524-565 151-194 (213)
500 PLN03186 DNA repair protein RA 93.5 0.35 7.6E-06 56.6 9.9 60 442-516 122-181 (342)
No 1
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.8e-57 Score=542.75 Aligned_cols=502 Identities=26% Similarity=0.461 Sum_probs=398.9
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
+.|++|++||||++|++|+||+++++.|.+++..++++|+||||||+|||||++|++||++++|.......||+.|..|.
T Consensus 1 m~y~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~ 80 (559)
T PRK05563 1 MMYQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80 (559)
T ss_pred CCcHHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.+.+++++++.++.++++++++++.+.+.|..++++||||||+|+|+.+++++|+++||+||.+++||++|+.++
T Consensus 81 ~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 81 AITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160 (559)
T ss_pred HHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChh
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
+++++|+|||+.+.|.+++..++..||..+++++|+.++++++..|+..++|++|+++++|+++..+ ++.||.++|.++
T Consensus 161 ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~~~~It~~~V~~v 240 (559)
T PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEV 240 (559)
T ss_pred hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998766 456999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc---h--hHHHHHHhCCCC
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD---R--HRRKFFRRQPLS 719 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g---~--~~~~~~~r~~ls 719 (1152)
++.+..+.+|++++++..+|...++..+..|+..|.++..++..|..+||+++..+...... . .....+ ...+.
T Consensus 241 lg~~~~~~i~~l~~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~Rdll~~k~~~~~~~~~~~~~~~~~~-~~~a~ 319 (559)
T PRK05563 241 TGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEILDESTENDELF-KELSE 319 (559)
T ss_pred hCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCcccccccCHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999877542211 0 111122 22456
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCCCCCCCCccccccCCCCccccCCccccc
Q 036794 720 KEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEI 799 (1152)
Q Consensus 720 ~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1152)
.++.+.|.+++..|.+++.++|++.+++++||+++++||...+ ..+... . . ...+.+++. .+
T Consensus 320 ~~s~~~L~~~i~~L~~~~~~lk~~~~~~l~lE~lllkl~~~~~-~~~~~~--~----~--------~~~~~~~~~---~l 381 (559)
T PRK05563 320 KLDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCEQAA-ASPEYD--T----E--------LEVLLQRVE---QL 381 (559)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhhcc-CCcccc--C----C--------HHHHHHHHH---HH
Confidence 8999999999999999999999999999999999999996322 001110 0 0 011111000 01
Q ss_pred ccccCCCCccccccccccCCCCccccCCccccccccccccCCCCccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHHhc
Q 036794 800 SNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQ 879 (1152)
Q Consensus 800 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iW~~vl~~~~ 879 (1152)
+. .+++....+... ...............................++...+...+...|.+||+.++
T Consensus 382 ~~---------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~~ 448 (559)
T PRK05563 382 EQ---------ELKQLKAQPVGV----APEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATRQDLELLKNVWGEILESLK 448 (559)
T ss_pred HH---------HHHhcccCCccc----ccccccccccccccccccccCCcchhhhhhhhccHHHHHHHHHHHHHHHHHHh
Confidence 11 000000000000 00000000000000000000000000001223344466778888999999998
Q ss_pred cch--HHHHHHhcCeEeEEecCCCCeEEEEeCCchhhhh---HHHhHHHHHHHHHHHhCCcEEEEEEEe
Q 036794 880 NNG--TKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSK---AEKFKDQILQAFESVLGSPLTIEIRCE 943 (1152)
Q Consensus 880 ~~~--l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~---~e~~~~~Ie~~~~~vlg~~v~v~i~~~ 943 (1152)
... ++++| .+|+|++++. .+++|.|.++.++.+ .+.....|++++.+++|.+++|.+..+
T Consensus 449 ~~~~~~~~~l-~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (559)
T PRK05563 449 AQRKSLRALL-VNSEPVAASE---DTVVLAFEYEIHFEKAMLDKELNDTIENILSKLLGKSVEIVAVPE 513 (559)
T ss_pred cccHHHHHHH-hcCeEeeccC---CEEEEEeCcHHHHHHHHhChHHHHHHHHHHHHHhCCCeEEEEEEh
Confidence 553 55555 6799998886 479999999876543 222338999999999999999997766
No 2
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=9.5e-56 Score=534.74 Aligned_cols=510 Identities=27% Similarity=0.459 Sum_probs=406.0
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC--CCCCCCCCCcc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE--QPKPCGFCNSC 484 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e--~~epcg~c~~c 484 (1152)
.|++|.+||||++|++++||+.++..|.+++..++++|+|||+||+|+|||++|++||+.++|.... ...||+.|..|
T Consensus 2 ~~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C 81 (620)
T PRK14948 2 AYEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELC 81 (620)
T ss_pred CcchHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHH
Confidence 4889999999999999999999999999999999999999999999999999999999999997543 24799999999
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
..+..+.+.+++++++....+++.++++++.+...|+++.++||||||+|+|+.+++++||++||+++.+++||++|+++
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~ 161 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDP 161 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCCh
Confidence 99999999999999987778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQEL 644 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~el 644 (1152)
+++.++|++||+.+.|.+++.+++..+|.+++.++|+.++++++..|+.+++|++|+++++|++++++.+.||.++|+++
T Consensus 162 ~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~~~It~e~V~~l 241 (620)
T PRK14948 162 QRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLPGPITPEAVWDL 241 (620)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc-hh--HHHHHH--hCCCC
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD-RH--RRKFFR--RQPLS 719 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g-~~--~~~~~~--r~~ls 719 (1152)
++...++.+|++++++..+|...++..+..|+..|++|..++..|+++||||+.++...... .. ...++. ...+.
T Consensus 242 vg~~~e~~i~~Ll~ai~~~d~~~al~~~~~Ll~~g~~p~~iL~~L~~~~RDLL~~K~~~~~~~l~~i~~d~~~~l~~~A~ 321 (620)
T PRK14948 242 LGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKTAPNRPDLVAVSQQTWDELCKLAK 321 (620)
T ss_pred hcCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccchhhhhcCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999987643221 10 011111 23456
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCCCCCCCCccccccCCCCccccCCccccc
Q 036794 720 KEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEI 799 (1152)
Q Consensus 720 ~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1152)
+|+...|.++++.|.++|.++|.+.++++|||.++++|+..+........ .......+...... . ..
T Consensus 322 ~~s~~~L~~~i~~L~eae~~LK~n~nprL~LE~lLl~l~~~~~~~~~~~~-~~~~~~~~~~~~~~--~----------~~ 388 (620)
T PRK14948 322 QINLERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLLPSAFISEIANA-SAPANPTPAPNPSP--P----------PA 388 (620)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhhccCcccccccc-ccccccCCccccCc--c----------cc
Confidence 89999999999999999999999999999999999999975432110000 00000000000000 0 00
Q ss_pred ccccCCCCcccccc-ccccCCCCccccCCccccccccccccCCCCccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHHh
Q 036794 800 SNKETGVPMNVRLE-NFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRI 878 (1152)
Q Consensus 800 ~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iW~~vl~~~ 878 (1152)
.. .......... ........ ..+.+.+. . . ..+...... ........+..+|+++|++||+.|
T Consensus 389 ~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~-~----~~~~~~~~~--~~~~~~~~~~~~l~~~w~~~~~~~ 452 (620)
T PRK14948 389 PI--QPSAPKTKQAATTPSPPPA-----KASPPIPV--P-A----EPTEPSPTP--PANAANAPPSLNLEELWQQILAKL 452 (620)
T ss_pred cC--CCCCCCCCCCCCCCCCCCC-----CCCCCCCC--C-C----CCCCCCCCC--CCCCCCCccccCHHHHHHHHHHhC
Confidence 00 0000000000 00000000 00000000 0 0 000000000 011112234568999999999999
Q ss_pred ccchHHHHHHhcCeEeEEecCCCCeEEEEeCCchhhhhHHHhHHHHHHHHHHHhCCcEEEEEEEecccccc
Q 036794 879 QNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQ 949 (1152)
Q Consensus 879 ~~~~l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~~e~~~~~Ie~~~~~vlg~~v~v~i~~~~~~d~~ 949 (1152)
+.+++|+||.++|+|+++.. ..++|.| ++....+++..+..||++|+++||++|+|.+.+.......
T Consensus 453 ~~~~~~~~~~~~~~l~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (620)
T PRK14948 453 ELPSTRMLLSQQAELVSLDS---NRAVIAV-SPNWLGMVQSRKPLLEQAFAKVLGRSIKLNLESQSGSASN 519 (620)
T ss_pred CChhHHHHHHhhhheecccC---CEEEEEe-CHHHHHHHHHhHHHHHHHHHHHhCCCeEEEEEecCCCCCC
Confidence 99999999999999999997 4789999 7777788888899999999999999999997775444443
No 3
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.5e-56 Score=531.80 Aligned_cols=500 Identities=20% Similarity=0.322 Sum_probs=393.1
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
++|++||||++|++|+||+++++.|++++..++++|+|||+||+|||||++|++||+.++|.......||+.|..|..+.
T Consensus 1 ~al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~ 80 (584)
T PRK14952 1 MALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALA 80 (584)
T ss_pred CcHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhh
Confidence 46899999999999999999999999999999999999999999999999999999999998766678999999999987
Q ss_pred C--CCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 489 R--GKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 489 ~--g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
. +.+.+++++++.+..++++++++.+.+.+.|+.+.++||||||+|+|+.+++|+||++||+++.+++|||+|+++++
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 5 35688999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh--CCCCCHHHHHHH
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRISVPLVQEL 644 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl--g~~IT~EdV~el 644 (1152)
++++|+|||+.|+|.+++..++.+||..+++++|+.++++++.+|+.+++|++|+++|+|++++.+ ++.||.++|.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~~~~It~~~v~~l 240 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYQRALGL 240 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCcCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999877 357999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhh---cch-----hHHHHHHhC
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT---KDR-----HRRKFFRRQ 716 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~---~g~-----~~~~~~~r~ 716 (1152)
++...++.+|++++++..+|...++..+++|+..|.+|..|+..|..+||+|+.++.... .+. .....+ ..
T Consensus 241 lg~~~~~~i~~lv~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~RdLll~k~~~~~~~~~l~~~~~~~~~~l-~~ 319 (584)
T PRK14952 241 LGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAVPDAAARGVVDAPEDVLERM-RE 319 (584)
T ss_pred HCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcchhhhcccccCCHHHHHHH-HH
Confidence 999999999999999999999999999999999999999999999999999999876321 111 011112 22
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCCCCCCCCccccccCCCCccccCCcc
Q 036794 717 PLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGER 796 (1152)
Q Consensus 717 ~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~s~~~~~~~~~~~~~~~~~~~~~~~ 796 (1152)
.+.+|+.+.|.++++.+.+...+++++.+++++||+++++||.+.. +... ..+ ...+..+++.....
T Consensus 320 qa~~~s~~~L~~~i~~l~~~~~~~~~~~~~rl~LE~llikl~~~~~------~~~~----~~~---~~~~~~le~~~~~~ 386 (584)
T PRK14952 320 QAARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLLLPSA------SDAE----SAL---LQRVERIETRLDMS 386 (584)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhcccc------cccH----HHH---HHHHHHHHHHHhhc
Confidence 3568999999999999999999999999999999999999996321 1000 000 00011111100000
Q ss_pred cccccccCCCCccccccccccCCCCccccCCccccccccccccCCCCccccCCCCCCCCCCCCCCCChhhHHHHHHHHHH
Q 036794 797 AEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLN 876 (1152)
Q Consensus 797 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iW~~vl~ 876 (1152)
.+... .+. ..... ..+........ . .+.+.. .............+...+.+.|.+|++
T Consensus 387 --~~~~~--~~~---------~~~~~----~~~~~~~~~~~-~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~W~~~l~ 444 (584)
T PRK14952 387 --IPANL--LHN---------APQAA----PAPSAAAPEPK-H---QPAPEP-RPVLAPTPASGEPNAAAVRSMWSTVRD 444 (584)
T ss_pred --ccccC--CCC---------CCCCC----CCCCCCCCCCC-C---CCCCCC-CCCCCCcccccchhHHHHHHHHHHHHH
Confidence 00000 000 00000 00000000000 0 000000 000001112244567788999999999
Q ss_pred Hhccch--HHHHHHhcCeEeEEecCCCCeEEEEeCCchhhhhHH--HhHHHHHHHHHHHhCCcEEEEEEEeccccc
Q 036794 877 RIQNNG--TKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAE--KFKDQILQAFESVLGSPLTIEIRCESKIDT 948 (1152)
Q Consensus 877 ~~~~~~--l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~~e--~~~~~Ie~~~~~vlg~~v~v~i~~~~~~d~ 948 (1152)
.++..+ +.. +.++++++.++. .+++|.|.+..++.+.+ ..+..|+++|.+++|.+++|++........
T Consensus 445 ~~~~~~~~~~a-~l~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~~~v~~~~~~~~~~ 516 (584)
T PRK14952 445 KVRQRSRTTEV-MLAGATVRALEG---NTLVLTHESAPLARRLSEQRNADVLAEALKDALGVNWRVRCETGKPAAA 516 (584)
T ss_pred HHhhcchhHHH-HHhcCEeeeccC---CEEEEEeCcHHHHHHHhCchhHHHHHHHHHHHhCCCeEEEEEeCCCCcc
Confidence 998543 333 447899999886 47999999988876533 247899999999999999998666543333
No 4
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.8e-55 Score=526.57 Aligned_cols=512 Identities=23% Similarity=0.363 Sum_probs=395.8
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.|+.|++||||++|++|+||+++++.|.+++..++++|+||||||+|+|||++|++||++++|.......||+.|..|..
T Consensus 2 sy~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~ 81 (576)
T PRK14965 2 SYLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVE 81 (576)
T ss_pred CcHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999987666789999999999
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
+..|.+.+++++++.++.++++++++++.+.+.|+.++++||||||+|+|+..++|+|+++||+|+.+++|||+|+++++
T Consensus 82 i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~k 161 (576)
T PRK14965 82 ITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHK 161 (576)
T ss_pred HhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhh
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHHH
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELV 645 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~elV 645 (1152)
++++|++||+.|+|.+++..++..+|..+++++|+.++++++.+|+..++||+|+++++|+++..+ ++.||.++|.+++
T Consensus 162 l~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~~It~edV~~ll 241 (576)
T PRK14965 162 VPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAELL 241 (576)
T ss_pred hhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999998766 5679999999999
Q ss_pred hccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc----hhH--HHHHHhCCCC
Q 036794 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD----RHR--RKFFRRQPLS 719 (1152)
Q Consensus 646 g~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g----~~~--~~~~~r~~ls 719 (1152)
+.+..+.+|++++++..+|...++..+.+|+..|.++..++..|..+||+|+.++...... ... ...+ ...+.
T Consensus 242 G~~~~~~l~~ll~al~~~d~~~al~~l~~l~~~G~~~~~~l~~Ll~~~RdLl~~k~~~~~~~~l~~~~~~~~~~-~~~A~ 320 (576)
T PRK14965 242 GVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGDLLDLSEAELAEL-RAQAA 320 (576)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999999999999999999999987542211 111 1112 23456
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCCCCCCCCccccccCCCCccccCCcc-cc
Q 036794 720 KEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGER-AE 798 (1152)
Q Consensus 720 ~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~ 798 (1152)
.|+.+.|.++++.|.+++.+||++.+++++||+++++||... |..+... .. ..+..+++..... ..
T Consensus 321 ~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~lE~lllkl~~~~----~~~~~~~-~~--------~~~~~l~~~~~~~~~~ 387 (576)
T PRK14965 321 AADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMATLA----PGAPVSE-LL--------DRLEALERGAPAPPSA 387 (576)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhcc----CCCCHHH-HH--------HHHHHHHHhhcccccc
Confidence 899999999999999999999999999999999999999631 1111000 00 0000000000000 00
Q ss_pred ccc-ccCCCCccccccccccCCCCccccCCccccccccccccCCCCccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHH
Q 036794 799 ISN-KETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNR 877 (1152)
Q Consensus 799 ~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iW~~vl~~ 877 (1152)
... .....+. .-+...+..... ..... +.... . ...+.+. ....+. .......+...+.+.|.++++.
T Consensus 388 ~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~-~~~~~-~-~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~W~~~~~~ 456 (576)
T PRK14965 388 AWGAPTPAAPA--APPPAAAPPVPP----AAPAR-PAAAR-P-APAPAPP-AAAAPP-ARSADPAAAASAGDRWRAFVAF 456 (576)
T ss_pred ccccCCCcccc--ccccccCCCCCC----CCCCc-ccccc-c-ccCCccc-ccCCcc-cccccccchhhhhhhHHHHHHH
Confidence 000 0000000 000000000000 00000 00000 0 0000000 000000 0000011345667789999999
Q ss_pred hc-c-chHHHHHHhcCeEeEEecCCCCeEEEEeCCchhhh---hHHHhHHHHHHHHHHHhCCcEEEEEEEecccc
Q 036794 878 IQ-N-NGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKS---KAEKFKDQILQAFESVLGSPLTIEIRCESKID 947 (1152)
Q Consensus 878 ~~-~-~~l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~---~~e~~~~~Ie~~~~~vlg~~v~v~i~~~~~~d 947 (1152)
++ . ..+++ |..+++|+.++. ..++|.|.+..++. ..++++..|++++.+++|.+++|.+...+...
T Consensus 457 ~~~~~~~~~~-~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 527 (576)
T PRK14965 457 VKGKKPALGA-SLEQGSPLGVSA---GLLEIGFPEGSFELSAMQDPDSRAELKALAEQFFGRPTRLRITVLAAPP 527 (576)
T ss_pred HHhccHHHHH-HHhcCceeeecC---CeEEEEeCchHHHHHHhcChHHHHHHHHHHHHHhCCCeEEEEEECCccc
Confidence 95 2 33444 447899999986 46999999874433 24567789999999999999999988876653
No 5
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.2e-54 Score=509.00 Aligned_cols=453 Identities=24% Similarity=0.387 Sum_probs=387.1
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
+.|+.|++||||++|+|||||+++++.|.+++..++++|+|||+||+|||||++|++||+.++|.......|||.|..|.
T Consensus 1 m~y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 80 (509)
T PRK14958 1 MAHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80 (509)
T ss_pred CCchhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999998777778999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..|.++|++++++.++.++++++++++.+.+.|..++++||||||+|+|+..++|+|+++||+||.+++|||+|+++.
T Consensus 81 ~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~ 160 (509)
T PRK14958 81 EIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHH 160 (509)
T ss_pred HHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChH
Confidence 99999999999999998999999999999999999989999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~EdV~el 644 (1152)
+++++|+|||+.|.|.+++..++..++..+++++|+.++++++..|+..++|++|+++++|++++.++ +.||.++|.++
T Consensus 161 kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~~~It~~~V~~~ 240 (509)
T PRK14958 161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTM 240 (509)
T ss_pred hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987774 67999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhc--chhHHHHHHhCCCCccc
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK--DRHRRKFFRRQPLSKEE 722 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~--g~~~~~~~~r~~ls~~s 722 (1152)
++...++.+|++++++..+|...++..+++|+..|+++..++..|+.++++++.++..... ......+. ..+..++
T Consensus 241 lg~~~~~~i~~ll~al~~~d~~~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 318 (509)
T PRK14958 241 LGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEALIENDSEQLR--QLAKLLD 318 (509)
T ss_pred HCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccccchHHHHH--HHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999886543211 11111111 1234688
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCCCCCCCCccccccCCCCccccCCcccccccc
Q 036794 723 MEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNK 802 (1152)
Q Consensus 723 ~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1152)
.+.|..+++++.....+||.+.+++++||++|++++.- .|... .. .+ .. .+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~----~~~~~--~~---~~------------~~------~~-- 369 (509)
T PRK14958 319 REDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLAF----YPSAA--NA---IP------------ET------ES-- 369 (509)
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhc----CCCcc--cc---cC------------CC------CC--
Confidence 88898899999999999999999999999999999942 22100 00 00 00 00
Q ss_pred cCCCCccccccccccCCCCccccCCccccccccccccCCCCccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHHhccch
Q 036794 803 ETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNG 882 (1152)
Q Consensus 803 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iW~~vl~~~~~~~ 882 (1152)
.... . .+.+ . . -.+.|.++++.+....
T Consensus 370 --------------~~~~-~--------------------~~~~----~--------~------~~~~W~~lv~~L~l~G 396 (509)
T PRK14958 370 --------------KEAV-V--------------------TPTP----K--------S------SETSWPQLLSQLKLTG 396 (509)
T ss_pred --------------CccC-C--------------------CCCC----C--------C------ccchHHHHHHHcCCch
Confidence 0000 0 0000 0 0 0125999999999777
Q ss_pred HHHHHHhcCeEeEEecCCCCeEEEEeCCchhhhhHHHhHHHHHHHHHHHhCCcEEEEEEEecc
Q 036794 883 TKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESK 945 (1152)
Q Consensus 883 l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~~e~~~~~Ie~~~~~vlg~~v~v~i~~~~~ 945 (1152)
+-..|.+++.++.... ..+.+.+.....-...++.+..|+.+|++.||.+|+|.|.+...
T Consensus 397 l~~qLA~n~~l~~~~~---~~i~L~L~~~~~~L~~~~~~~~L~~ALs~~~G~~i~L~I~~g~~ 456 (509)
T PRK14958 397 ATLALAQQCSLKELTD---NRLYLMLNPKQKPLLQQKHIERISEALSEHFNRTITVKIDISNH 456 (509)
T ss_pred HHHHHHhhhhhhcccC---CEEEEEEChhhhhhcCHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Confidence 7777888888888865 45888888654333456678899999999999999999886643
No 6
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=3e-54 Score=505.95 Aligned_cols=355 Identities=31% Similarity=0.530 Sum_probs=331.2
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
+.|+.+++||||++|+|++||++++.+|.+++..++++|+|||+||+|||||++||+||+.+||......+||+.|..|.
T Consensus 1 m~yq~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck 80 (515)
T COG2812 1 MSYQVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCK 80 (515)
T ss_pred CchHHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhH
Confidence 35889999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..|.+.|++|+|++++++++++|++.+.+.+.|..++|+|+||||+|||+..++|+|||+|||||.+|+|||+|++++
T Consensus 81 ~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~ 160 (515)
T COG2812 81 EINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQ 160 (515)
T ss_pred hhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~EdV~el 644 (1152)
++|.+|+|||++|+|.+++.++|...|..++.++++.++++|+..|++.++|++|+++++||++..++ +.||.+.|.++
T Consensus 161 Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~ 240 (515)
T COG2812 161 KIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEITLESVRDM 240 (515)
T ss_pred cCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997775 57999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhh----cchhHHHHHHhCCCCc
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT----KDRHRRKFFRRQPLSK 720 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~----~g~~~~~~~~r~~ls~ 720 (1152)
+|.+..+.+.+++++++.+|...++..++++++.|.+|..++.+|+.+++++|..+...- .........-+..+..
T Consensus 241 lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ 320 (515)
T COG2812 241 LGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVPNELQLNTTEIEERTKELASQ 320 (515)
T ss_pred hCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhcccchhhccchhhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999777554321 1111111111123457
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCC
Q 036794 721 EEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760 (1152)
Q Consensus 721 ~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~ 760 (1152)
++...|.++++.+......+|.+.++++++|+++++++..
T Consensus 321 ~~~~~l~~~~~~~~~~~~e~~~s~~~~~~~E~~lirl~~~ 360 (515)
T COG2812 321 ISVLNLQRLYQLLLPGLKELKRSLSPRLGLEMTLIRLLEA 360 (515)
T ss_pred cCHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999964
No 7
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.5e-51 Score=497.81 Aligned_cols=520 Identities=24% Similarity=0.390 Sum_probs=394.9
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCC-CCCCCCCCCCccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL-EQPKPCGFCNSCI 485 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~-e~~epcg~c~~c~ 485 (1152)
.++.|++||||++|++||||++++..|.+++..++++|+||||||+|+|||++|++||+.++|... ....||+.|..|.
T Consensus 2 ~~~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~ 81 (585)
T PRK14950 2 TVQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCR 81 (585)
T ss_pred ccHHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHH
Confidence 478899999999999999999999999999999999999999999999999999999999999764 3457999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.+.+++++++....++++++++++.+...|+++.++||||||+|+|+.++++.|+++||+++.+++||+++++.+
T Consensus 82 ~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~ 161 (585)
T PRK14950 82 AIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVH 161 (585)
T ss_pred HHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChh
Confidence 99999999999998877788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
++.++|++||+++.|.+++..++..++.+++.++|+.++++++.+|+.+++||+|.++++|++++.+ ++.||.++|.++
T Consensus 162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~~~~It~e~V~~l 241 (585)
T PRK14950 162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQSL 241 (585)
T ss_pred hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999877 457999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc---hh--HHHHHHhCCCC
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD---RH--RRKFFRRQPLS 719 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g---~~--~~~~~~r~~ls 719 (1152)
++...++++|++++++..+|..+++++++.|+..|+++..|+..|.++||+|+.++...... .. ...++ .++++
T Consensus 242 l~~s~~~~vf~Lidal~~~d~~~al~~l~~L~~~g~~~~~il~~L~~~lR~Ll~lk~g~~~~~l~i~p~~~~~~-~~qa~ 320 (585)
T PRK14950 242 LGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSLLDLTADEKAAL-QKVSQ 320 (585)
T ss_pred hcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHH-HHHHh
Confidence 99999999999999999999999999999999999999999999999999999987543221 10 11122 33567
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccc-cCCCCCCC--C-CCCCCccccccCCC--CccccC
Q 036794 720 KEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYV-LPSSSADT--S-FSHSPLDLENAGGR--GMTRKG 793 (1152)
Q Consensus 720 ~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~-~~~ss~~~--s-~~~~~~~~~~~~~~--~~~~~~ 793 (1152)
+|+.+.|.++++.|.++|+++|++.+++++||++|+++|-..... .+..++.+ . ....+. +..+ .+....
T Consensus 321 ~~s~~~L~~~l~~l~~~D~~lK~~~~~~l~lE~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 396 (585)
T PRK14950 321 IANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPA----PSTRPKAAAAAN 396 (585)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcCCcccccccccccCCcCccCCCCC----CCCccccccccc
Confidence 999999999999999999999998888999999999999543211 11111100 0 000000 0000 000000
Q ss_pred CcccccccccCCCCccccccccccCCCCccccCCccccccccccccCCCCccccCCCC-CCC--CCCCCCCCChhhHHHH
Q 036794 794 GERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSP-LSA--GGRHVSGNSRNGIEEI 870 (1152)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~l~~i 870 (1152)
..+..... ....+. +.-....++.... ..+......+..+..........+. ... ..........+.|+..
T Consensus 397 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (585)
T PRK14950 397 IPPKEPVR-ETATPP-PVPPRPVAPPVPH----TPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLEQLEAI 470 (585)
T ss_pred CCcccccc-cCCCCC-CCCCCCCCCCCCC----CCCCCCCcccccccCCcCCCCCCCCCCcccccCCCCcchhHHHHHHH
Confidence 00000000 000000 0000000000000 0000000000000000000000000 000 0011123456789999
Q ss_pred HHHHHHHhccchH--HHHHHhcCeEeEEecCCCCeEEEEeCCchhhhh--HHHhHHHHHHHHHHHhCCcEEEEE
Q 036794 871 WLEVLNRIQNNGT--KEFLYREGKLISVSFGAAPTVQLTFRSHLTKSK--AEKFKDQILQAFESVLGSPLTIEI 940 (1152)
Q Consensus 871 W~~vl~~~~~~~l--~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~--~e~~~~~Ie~~~~~vlg~~v~v~i 940 (1152)
|.+|++.++..+. ..+|...++++.+.. .++.|.|.+..++.+ .++.+..|++++.+++|.++.|++
T Consensus 471 w~~~~~~~~~~~~~~~~~~~~~a~p~~~~~---~~l~l~~~~~~~~~~~~~~~~r~~i~~~l~~~~g~~~~v~c 541 (585)
T PRK14950 471 WKQILRDVPPRSPAVQALLSSGVRPVSVEK---NTLTLSFKSKFHKDKIEEPENRKITEELLSNFVGKTCAVRC 541 (585)
T ss_pred HHHHHHHHhhcCHHHHHHHhCCCeeeeecC---CEEEEecCcHHHHHHhhchHHHHHHHHHHHHHhCCceEEEE
Confidence 9999999986654 444444479988875 589999999999886 556899999999999999988885
No 8
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.9e-51 Score=492.00 Aligned_cols=355 Identities=30% Similarity=0.498 Sum_probs=327.9
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC--------CCCC
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE--------QPKP 477 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e--------~~ep 477 (1152)
+.|+.+++||||++|++|+||+.++..|++++..++++|+|||+||+|+|||++|++||+.++|.... ...|
T Consensus 1 m~~~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~ 80 (620)
T PRK14954 1 MSYQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP 80 (620)
T ss_pred CCcHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999996432 2379
Q ss_pred CCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEE
Q 036794 478 CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVF 557 (1152)
Q Consensus 478 cg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~Vif 557 (1152)
|+.|..|..+..|.+.++.++++....++++|+++++.+...|++++++||||||+|.|+..++++|+++||+|+.+++|
T Consensus 81 Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~ 160 (620)
T PRK14954 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIF 160 (620)
T ss_pred CccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 99999999999999999999998777889999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC----
Q 036794 558 ILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG---- 633 (1152)
Q Consensus 558 ILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg---- 633 (1152)
|++|++++++.++|.+||+.|.|.+++..++..||..++.++|+.|+++++++|+..++||+|.++++|++++.+.
T Consensus 161 IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~~~ 240 (620)
T PRK14954 161 IFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSE 240 (620)
T ss_pred EEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred --CCCCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHH-
Q 036794 634 --QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRR- 710 (1152)
Q Consensus 634 --~~IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~- 710 (1152)
+.||.++|.++++...++++|++++++..+|..+|+.+++.|+..|++|..|+..|+++||+||.++.....+....
T Consensus 241 ~~~~It~~~V~~lv~~~~e~~iF~L~dai~~~d~~~al~~l~~Ll~~ge~p~~iL~lL~~~fRdLL~vK~~~~~~l~~~~ 320 (620)
T PRK14954 241 AEKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRSTRLIERP 320 (620)
T ss_pred cCCccCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccccccCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999876544332211
Q ss_pred HHHH---hCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCC
Q 036794 711 KFFR---RQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760 (1152)
Q Consensus 711 ~~~~---r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~ 760 (1152)
.++. .+++.+|+.+.|.++++.|.++|.+||+..++++.||++++++|..
T Consensus 321 ~~v~~~l~~qA~~fs~~~L~~~l~~l~e~d~~LKtn~n~~l~lEllLlkl~~~ 373 (620)
T PRK14954 321 ESVKERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIEL 373 (620)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc
Confidence 1211 2345689999999999999999999999999999999999999963
No 9
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.4e-51 Score=492.15 Aligned_cols=533 Identities=24% Similarity=0.375 Sum_probs=400.4
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC-CCCCCCCCCccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE-QPKPCGFCNSCI 485 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e-~~epcg~c~~c~ 485 (1152)
.|..|.+||||.+|++|+||++++..|.+++..++++|+||||||+|+|||++|+++|+.++|.... ...+|+.|.+|.
T Consensus 3 ~~~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~ 82 (614)
T PRK14971 3 NYIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCV 82 (614)
T ss_pred hhHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHH
Confidence 4778999999999999999999999999999999999999999999999999999999999997643 347999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.+.+++++++.+..++++++++++.+...|++++++||||||+|.|+..++++|+++||+|+.+++|||+|++..
T Consensus 83 ~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~ 162 (614)
T PRK14971 83 AFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKH 162 (614)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCch
Confidence 99999999999999987888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
++.++|++||+.+.|.+++.+++..||..++.++|+.++++++++|+..++||+|.++++|++++.+ ++.|+.++|.++
T Consensus 163 kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~It~~~V~~~ 242 (614)
T PRK14971 163 KILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIEN 242 (614)
T ss_pred hchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998766 556999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcch------hHHHHHHhCCC
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR------HRRKFFRRQPL 718 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~------~~~~~~~r~~l 718 (1152)
+.....+++|++++++..++...|+..++.|+..|++|..|+..|+++||+||.++....... ....| ..++
T Consensus 243 l~~~~~~~iF~L~dai~~~~~~~al~ll~~Ll~~g~~~~~iL~~L~~~fRdlL~~K~~~~~~ll~v~~~~~~~~--~~qa 320 (614)
T PRK14971 243 LNILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAATLQLLEVGESIRQRY--LEQA 320 (614)
T ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccccccccCCHHHHHHH--HHHH
Confidence 999999999999999999999999999999999999999999999999999999876543211 11122 2246
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCCCCCCCCcc-cc----------ccCCC
Q 036794 719 SKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLD-LE----------NAGGR 787 (1152)
Q Consensus 719 s~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~s~~~~~~~-~~----------~~~~~ 787 (1152)
.+|+.+.|+++++.|.++|..||++.+++++||.++++||...+ +.. ..+...+|.. ++ .+...
T Consensus 321 ~~~s~~~L~~~l~~l~e~d~~lK~~~n~~l~lE~lllkL~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (614)
T PRK14971 321 QKCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQLTQ---KGD--DASGGRGPKQHIKPVFTQPAAAPQPSAA 395 (614)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC---Ccc--ccCCCCCcccccchhhhccCCCCCcccc
Confidence 78999999999999999999999999999999999999996322 111 1111111100 00 00000
Q ss_pred CccccCCccccccc-c-cCCCCccccccccccCCCCccccCCcc-----ccccc----cccccC-----CCC--------
Q 036794 788 GMTRKGGERAEISN-K-ETGVPMNVRLENFHAENSGDFIDGNMR-----KGISL----DRKRHT-----GSG-------- 843 (1152)
Q Consensus 788 ~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~-----~~~-------- 843 (1152)
.............. . .....++...................+ ....+ ...... .-+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (614)
T PRK14971 396 AAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQ 475 (614)
T ss_pred ccccccccccccccCCCCCcccccccCCCCCCCCCCccccCCCCCcCCccCCCcccccccCCCccccccccccccccchh
Confidence 00000000000000 0 000000000000000000000000000 00000 000000 000
Q ss_pred cccc--CCCCCCC-CCCCCCCCChhhHHHHHHHHHHHhccchHHHHHHhcCeEeEEecCCCCeEEEEeCCchhhhhHHHh
Q 036794 844 MALQ--QKSPLSA-GGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKF 920 (1152)
Q Consensus 844 ~~~~--~~~~~~~-~~~~~~~~~~~~l~~iW~~vl~~~~~~~l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~~e~~ 920 (1152)
.... ....... .......++.++|...|.+++++++... +.++. ..+........+++++|.+.+.+.+...++.
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~Ft~e~l~~~W~~~~~~~~~~~-~~~~~-~m~~~~p~~~~~~~i~v~v~N~~~~~~l~~~ 553 (614)
T PRK14971 476 EKAEQATGNIKEAPTGTQKEIFTEEDLQYYWQEFAGTRPQEE-KALKE-TMINCRPKLLNGTTFEVAVDNELQEKELTNL 553 (614)
T ss_pred hhhhhhhccccccCCCcccCCCCHHHHHHHHHHHHHHHHHHH-HHHHH-HHHhCCCcccCCceEEEEeCCHHHHHHHHHH
Confidence 0000 0000000 1111146899999999999999997664 22222 2344444444447899999999988888888
Q ss_pred HHHHHHHHHHHhC-CcEEEEEEEeccccc
Q 036794 921 KDQILQAFESVLG-SPLTIEIRCESKIDT 948 (1152)
Q Consensus 921 ~~~Ie~~~~~vlg-~~v~v~i~~~~~~d~ 948 (1152)
+..|.+.|..-|+ ..|+|.|++....+.
T Consensus 554 ~~~ll~~lr~~L~N~~i~l~i~v~e~~e~ 582 (614)
T PRK14971 554 IPDLLGFLRGRLKNSKITMTVRVSEPTEV 582 (614)
T ss_pred HHHHHHHHHHhcCCCceEEEEEecccccc
Confidence 8999999998888 999999998865544
No 10
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.2e-50 Score=497.45 Aligned_cols=350 Identities=24% Similarity=0.415 Sum_probs=322.7
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
..|++||||++|++||||+.++..|++++..++++|+|||+||+|+|||++|++||+.|+|.......||+.|.+|..+.
T Consensus 3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~ 82 (824)
T PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALA 82 (824)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999998665567999999999998
Q ss_pred CC--CccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 489 RG--KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 489 ~g--~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
.+ .+.+++++++....++++|+++.+.+.+.+..++++||||||+|+|+..++|+||++||+++.+++|||+|+++++
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 88 7788999998888899999999999988899899999999999999999999999999999999999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh--CCCCCHHHHHHH
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRISVPLVQEL 644 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl--g~~IT~EdV~el 644 (1152)
|+++|+|||+.|.|.+++.+++.+||.++++++|+.++++++.+|+..++||+|+++++|++++.+ .+.||.++|.++
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~~IT~e~V~al 242 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEGVTYERAVAL 242 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999866 356999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhc------ch--hHHHHHHhC
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK------DR--HRRKFFRRQ 716 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~------g~--~~~~~~~r~ 716 (1152)
++......+|++++++..+|...++.++++|+..|+++..|+..|.++||+|+.++..... +. .....+ ..
T Consensus 243 lg~~~~~~I~~lidAL~~~D~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~vka~~~~~~~~l~~~p~d~~~~L-~~ 321 (824)
T PRK07764 243 LGVTDSALIDEAVDALAAGDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQAVPDAAERGLVDAPADQLDRM-RA 321 (824)
T ss_pred hcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcchhhhhccCCHHHHHHH-HH
Confidence 9999999999999999999999999999999999999999999999999999987653321 11 111111 23
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 717 PLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 717 ~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
++.+|+...|.++++.|.++...+|...++++.||+++++|+.
T Consensus 322 qA~~~s~~~L~r~ie~l~ea~~~lrgn~nprL~LElLllrLll 364 (824)
T PRK07764 322 QAQRLGPAELTRAADVVNDGLTEMRGATSPRLLLELLCARMLL 364 (824)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh
Confidence 4569999999999999999999999999999999999999985
No 11
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.5e-50 Score=481.80 Aligned_cols=353 Identities=24% Similarity=0.437 Sum_probs=324.7
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC-----CCCCCCC
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE-----QPKPCGF 480 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e-----~~epcg~ 480 (1152)
+.|+.|++||||++|++||||+++++.|.+++..++++|+|||+||+|+|||++|++||+.++|.... ...|||.
T Consensus 1 msy~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~ 80 (618)
T PRK14951 1 MSYLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV 80 (618)
T ss_pred CchHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc
Confidence 35889999999999999999999999999999999999999999999999999999999999996432 2379999
Q ss_pred CCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEE
Q 036794 481 CNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILV 560 (1152)
Q Consensus 481 c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILa 560 (1152)
|..|..+..|.+.+++++++..+.++++++++++.+.+.|..++++||||||+|+|+..++|+|+++||+++.+++|||+
T Consensus 81 C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~ 160 (618)
T PRK14951 81 CQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLA 160 (618)
T ss_pred cHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEE
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHH
Q 036794 561 SSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVP 639 (1152)
Q Consensus 561 TN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~E 639 (1152)
|+++.+++++|++||..|.|.+++.+++..+|..++.++|+.++++++.+|+..++|++|++++++++++.++ +.||.+
T Consensus 161 Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~~~~It~~ 240 (618)
T PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEA 240 (618)
T ss_pred ECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987664 569999
Q ss_pred HHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc----hhHHHHHHh
Q 036794 640 LVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD----RHRRKFFRR 715 (1152)
Q Consensus 640 dV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g----~~~~~~~~r 715 (1152)
+|.++++...++.+|++++++..+|...++..+++|+..|+++..|+..|...+++|+..+..-... ......+.
T Consensus 241 ~V~~~Lg~~~~~~i~~LldaL~~~d~~~al~~l~~l~~~G~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 319 (618)
T PRK14951 241 AVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAATDPEAAEVA- 319 (618)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCcccccccChHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999876432210 11111111
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 716 QPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 716 ~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
.....++.+.|..+++++......++.+.++++.||++|++|+.
T Consensus 320 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~em~l~r~~~ 363 (618)
T PRK14951 320 RLAALMPADETQLLYSICLHGRAELGLAPDEYAALTMVLLRLLA 363 (618)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh
Confidence 12347899999999999999999999999999999999999984
No 12
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.2e-49 Score=475.59 Aligned_cols=356 Identities=25% Similarity=0.454 Sum_probs=328.0
Q ss_pred cccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCC-----CCCC
Q 036794 405 NGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQP-----KPCG 479 (1152)
Q Consensus 405 ~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~-----epcg 479 (1152)
...|+.|.+||||++|++|+||+.+++.|.+++..++++|+|||+||+|+|||++|++||+.++|...... .||+
T Consensus 8 ~~~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 8 ATPYRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CccchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 34589999999999999999999999999999999999999999999999999999999999999864332 6999
Q ss_pred CCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEE
Q 036794 480 FCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFIL 559 (1152)
Q Consensus 480 ~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifIL 559 (1152)
.|..|..+..+.+.|++++++.+..++++|+++++.+.+.|++++++||||||+|+|+..++++|+++||+|+.+++|||
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl 167 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIF 167 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCH
Q 036794 560 VSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISV 638 (1152)
Q Consensus 560 aTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~ 638 (1152)
+|+++++++++|++||+.|+|.+++..++..||..+++++|+.++++++++|+..++|++|.+.++|++++.++ +.||.
T Consensus 168 ~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g~g~It~ 247 (598)
T PRK09111 168 ATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEVTA 247 (598)
T ss_pred EeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987664 57999
Q ss_pred HHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhh--cchhHHHHHH--
Q 036794 639 PLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT--KDRHRRKFFR-- 714 (1152)
Q Consensus 639 EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~--~g~~~~~~~~-- 714 (1152)
++|.++++...+..+|++++++..+|...|+..++.|+..|.+|..|+..|++++++|+.++.... .......+..
T Consensus 248 e~V~~llg~~~~~~if~L~~ai~~gd~~~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~vK~~~~~a~~~~~~p~~~~k 327 (598)
T PRK09111 248 EAVRDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAAEDPSLSEAERTR 327 (598)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhcccCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999876421 1111111111
Q ss_pred -hCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCC
Q 036794 715 -RQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760 (1152)
Q Consensus 715 -r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~ 760 (1152)
...+.+++...|.++++.|.+++..+|++.++++++|++|++||..
T Consensus 328 l~~~A~~~s~~~L~r~~q~Ll~~~~~vK~~~n~~lalE~lLlrl~~~ 374 (598)
T PRK09111 328 GAEFAKKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLIRLAYA 374 (598)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhh
Confidence 2245589999999999999999999999999999999999999963
No 13
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.4e-49 Score=465.99 Aligned_cols=490 Identities=25% Similarity=0.389 Sum_probs=378.8
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR 489 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~ 489 (1152)
++++||||++|+||+||++++..|.+++..++++|+||||||||||||++|++||+.++|... ...+|+.|..|..+..
T Consensus 3 ~l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~-~~~~cg~C~sc~~i~~ 81 (504)
T PRK14963 3 ALYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGE-DPKPCGECESCLAVRR 81 (504)
T ss_pred hHHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCC-CCCCCCcChhhHHHhc
Confidence 578999999999999999999999999999999999999999999999999999999999754 3579999999999999
Q ss_pred CCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchH
Q 036794 490 GKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPH 569 (1152)
Q Consensus 490 g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~ 569 (1152)
+.+.++.++++....+++.++++.+.+...|+.+.++||||||+|.++..++++|+++|++++.+++||++|+.+.++++
T Consensus 82 ~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 82 GAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCCh
Confidence 99999999998878899999999999988899999999999999999999999999999999999999999999999999
Q ss_pred HHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccc
Q 036794 570 IIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLIS 649 (1152)
Q Consensus 570 aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ 649 (1152)
++.+||+.|.|.+++.+++..||..+++++|+.++++++++|+..++||+|.++|+|++++.+++.||.++|.++++...
T Consensus 162 ~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~ 241 (504)
T PRK14963 162 TILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTPVTRKQVEEALGLPP 241 (504)
T ss_pred HHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999988877899999999999999
Q ss_pred hhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHHHHHHH
Q 036794 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQA 729 (1152)
Q Consensus 650 ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~kL~qa 729 (1152)
++++|++++++..+|...|+..+++|+..|++|..|+..|.++++.++.++.....+. ...+..+.+.++
T Consensus 242 ~~~if~Li~al~~~d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r~ll~~k~~~~~~~----------~~~~~~~~~~~~ 311 (504)
T PRK14963 242 QERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYAELGLGGGP----------RLEGAEPRLLAA 311 (504)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCccc----------ccccCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999999875543221 112455779999
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCCCCCCCCccccccCCCCccccCCcccccccccCCCCcc
Q 036794 730 LKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMN 809 (1152)
Q Consensus 730 L~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (1152)
++.|.+.++++..+.+ +..||++|+++|.+.. ..+++.... ..+... ....+.++.. .+++
T Consensus 312 l~~l~~~~~~~~~~~~-~~~l~~~l~~~~~~~~-~~~~~~~~~---~~~~~~---~~~~~~~r~~---~le~-------- 372 (504)
T PRK14963 312 MTALDEQMERFARRSD-ALSLELALLHALLALG-GAPSEGVAA---VAPPAP---APADLTQRLN---RLEK-------- 372 (504)
T ss_pred HHHHHHHHHHHHhccc-hhHHHHHHHHHHhhhc-cCCcccccc---ccccCC---CHHHHHHHHH---HHHH--------
Confidence 9999999999877665 6779999999996431 111111000 001000 0111111111 1111
Q ss_pred ccccccccCCCCc---cccCCccccccccccccCCCCccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHHhccchHHHH
Q 036794 810 VRLENFHAENSGD---FIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEF 886 (1152)
Q Consensus 810 ~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iW~~vl~~~~~~~l~~~ 886 (1152)
-...+... .................. .+.+............+...+...+.+-|.+|+..++ ..++++
T Consensus 373 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~ 444 (504)
T PRK14963 373 -----EVRSLRSAPTAAATAAGAPLPDFDPRPRG--PPAPEPARSAEAPPLVAPAAAPAGLALRWRDVLAALK-MQLRAF 444 (504)
T ss_pred -----HhccCCCCccccCCCCCCCccccCcccCC--CCCccccccccCCCccCChhHHHHHHHHHHHHHHHhh-HHHHHH
Confidence 11110000 000000000000000000 0000000000001111233455677888999999995 446888
Q ss_pred HHhcCeEeEEecCCCCeEEEEeCCch--hhhhHHHhHHHHHHHHHHHhCCcEEEEEEEe
Q 036794 887 LYREGKLISVSFGAAPTVQLTFRSHL--TKSKAEKFKDQILQAFESVLGSPLTIEIRCE 943 (1152)
Q Consensus 887 l~~~gkl~s~~~~~~~~v~l~F~~~~--~~~~~e~~~~~Ie~~~~~vlg~~v~v~i~~~ 943 (1152)
|.. +.+ ++.. ..++|.|.... +....++.+..|++.+++++| +|+|+++..
T Consensus 445 ~~~-~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 497 (504)
T PRK14963 445 LRE-ARP-HVEE---GYVSLTFPERASFHYKQAQKKLAELAALVREVFG-PETVELILP 497 (504)
T ss_pred HHh-hcc-cCCC---CeEEEEecCccchhhhhhHHHHHHHHHHHHHHhC-CeEEEEEec
Confidence 865 444 3332 26999999864 444566788999999999999 888887754
No 14
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.4e-50 Score=470.50 Aligned_cols=347 Identities=29% Similarity=0.460 Sum_probs=321.8
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR 489 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~ 489 (1152)
.|.+||||++|+|||||+.+++.|.+++..++++|+|||+||+|+|||++|++||+.++|...+...||+.|..|..+..
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 47889999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred CCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchH
Q 036794 490 GKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPH 569 (1152)
Q Consensus 490 g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~ 569 (1152)
+.+.++++++++++.++++++++++.+.+.|++++++||||||+|+|+.+++|+|+++||+|+.+++|||+|++++++++
T Consensus 82 ~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~ 161 (491)
T PRK14964 82 SNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPV 161 (491)
T ss_pred cCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHhcc
Q 036794 570 IIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELVGLI 648 (1152)
Q Consensus 570 aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~elVg~v 648 (1152)
+|++||+.++|.+++..++..+|..+++++|+.++++++++|++.++|++|+++++|++++.+ ++.||.++|.++++..
T Consensus 162 tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~~~It~e~V~~llg~~ 241 (491)
T PRK14964 162 TIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGCV 241 (491)
T ss_pred HHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999999999999999999999877 4579999999999999
Q ss_pred chhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhc--chh--HHHHHHhCCCCcccHH
Q 036794 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK--DRH--RRKFFRRQPLSKEEME 724 (1152)
Q Consensus 649 ~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~--g~~--~~~~~~r~~ls~~s~~ 724 (1152)
....+|+++++++.+|..+|+..+++|+..| +|..|+..|..++++++..+..... ... .....+.. .. ++..
T Consensus 242 ~~~~If~L~~aI~~~d~~~Al~~l~~Ll~~g-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~ 318 (491)
T PRK14964 242 DKHILEDLVEAILLGDAQSALNVFRELCNTS-NPVIILEGMLQIIYEICYFSITKEIDFLLGEDLITRIKSL-KI-GSTI 318 (491)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHH-hC-CCHH
Confidence 9999999999999999999999999999876 7999999999999998876532211 111 11122222 23 8999
Q ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 725 KLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 725 kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
.|.++++.|.+...++|.+.+|++.+|+++++||.
T Consensus 319 ~l~~~~~~l~~~~~~~~~~~~~~~~~e~~~~rl~~ 353 (491)
T PRK14964 319 FLSRLWQMLLKGIQEVKSSTCVKQAAEMMIIRLCY 353 (491)
T ss_pred HHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999995
No 15
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.1e-49 Score=468.60 Aligned_cols=473 Identities=24% Similarity=0.401 Sum_probs=384.6
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
+.|+.|.+||||++|++|+||+++++.|.+++..++++|+|||+||+|+|||++|++||+.++|.......||+.|..|.
T Consensus 1 m~~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 1 MSYQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred CCcHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999998766668999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.+.+++++++..+.++++++++++.+...|+.++++||||||+|+|+.+++|+|+++||+++.+++||++|+++.
T Consensus 81 ~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~ 160 (527)
T PRK14969 81 EIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQ 160 (527)
T ss_pred HHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChh
Confidence 99999999999999888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
+++++|+|||+.+.|.+++..++..+|..+++++|+.++++++.+|+..++|++|++++++++++.+ .+.|+.++|.++
T Consensus 161 kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~~~I~~~~v~~~ 240 (527)
T PRK14969 161 KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAM 240 (527)
T ss_pred hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998766 457999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhc---chhHHHHHHhCCCCcc
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK---DRHRRKFFRRQPLSKE 721 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~---g~~~~~~~~r~~ls~~ 721 (1152)
++...++.+|++++++..+|...++..+++|+..|+++..++..|+.+||+++..+..-.. .......+. ..+.++
T Consensus 241 ~~~~~~~~i~~ll~al~~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rd~~~~~~~~~~~~~~~~~~~~~~-~~a~~~ 319 (527)
T PRK14969 241 LGAIDQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIADDLPERDRLL-DLAKRL 319 (527)
T ss_pred HCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCcccccccchHHHHHH-HHHHcC
Confidence 9999999999999999999999999999999999999999999999999999998752211 111112222 234589
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCCCCCCCCccccccCCCCccccCCccccccc
Q 036794 722 EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISN 801 (1152)
Q Consensus 722 s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1152)
+.+.|..+++.+.++...|+.+.++++.||++|++++.-. |.....+ ....+ . . .+.
T Consensus 320 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~----~~~~~~~-~~~~~------------~--~----~~~ 376 (527)
T PRK14969 320 SPEDIQLYYQIALHGRRDLGLAPDEYAGFTMTLLRMLAFR----PSEQDSG-AGRAP------------G--A----VPG 376 (527)
T ss_pred CHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhccC----CCCCCcC-CCCCC------------C--C----CCC
Confidence 9999999999999999999999999999999999998421 1110000 00000 0 0 000
Q ss_pred ccCCCCccccccccccCCCCccccCCccccccccccccCCCCccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHHhccc
Q 036794 802 KETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNN 881 (1152)
Q Consensus 802 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iW~~vl~~~~~~ 881 (1152)
.. .+. . .. . . .. ..+ ..+.+ .. . ....+-|.++++++.-.
T Consensus 377 ~~--~~~--~-----~~-~-~----~~---~~~-------~~~~~----~~---~--------~~~~~~W~~lv~~L~l~ 416 (527)
T PRK14969 377 VN--RTR--A-----VP-T-A----AP---AAP-------AAATP----SD---R--------QSFNGNWRALVDQLKLS 416 (527)
T ss_pred CC--CCC--C-----CC-C-C----CC---CCc-------cCCCC----CC---C--------CcccccHHHHHHHcCCc
Confidence 00 000 0 00 0 0 00 000 00000 00 0 00112599999999866
Q ss_pred hHHHHHHhcCeEeEEecCCCCeEEEEeCCchhhhhHHHhHHHHHHHHHHHhCCcEEEEEEEecc
Q 036794 882 GTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESK 945 (1152)
Q Consensus 882 ~l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~~e~~~~~Ie~~~~~vlg~~v~v~i~~~~~ 945 (1152)
.+-..|..|+.++.... ..+.+.......-...++.+..++.+|.+.||.+++|.|.+...
T Consensus 417 g~~~qLA~n~~l~~~~~---~~v~L~l~~~~~~L~~~~~~~~L~~ALs~~~G~~~~l~I~~g~~ 477 (527)
T PRK14969 417 GLARELAQNCELKSFSE---DRIELRVPEAHKHLLDKPYQDKLQAALEQHFGRPVQLIFSLGGV 477 (527)
T ss_pred hHHHHHHHhhhhhcccC---CEEEEEeChhhhhhcCHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Confidence 55555667888888764 45777776443333356668899999999999999999986653
No 16
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.1e-50 Score=468.24 Aligned_cols=356 Identities=26% Similarity=0.469 Sum_probs=320.7
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
+.|++|++||||++|+|+|||++++..|.+++..++++|+|||+||+|||||++|++||+.++|.......||+.|..|.
T Consensus 3 ~~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 3 GTHEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CCcchhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999998877778999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.+.++++++++.+.+++.++++++.+...|..++++||||||+|+|+.+++++||++||+|+.+++||++|++++
T Consensus 83 ~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~ 162 (484)
T PRK14956 83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFH 162 (484)
T ss_pred HHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChh
Confidence 99999999999999988889999999999998888888999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
+++++|+|||+.|.|.+++..++..+|+.++..+|+.++++++.+|++.++|++|+++++||+++.+ ++.||.+.|.++
T Consensus 163 kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~ 242 (484)
T PRK14956 163 KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKM 242 (484)
T ss_pred hccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997644 567999999999
Q ss_pred HhccchhhHHHHHHHHHcCCH-HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhc----chhHHHHHH-hCCC
Q 036794 645 VGLISDEKLVDLLDLALSADT-VNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK----DRHRRKFFR-RQPL 718 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~-~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~----g~~~~~~~~-r~~l 718 (1152)
++....+.++++++++..+|. ..++.++.+|+..|+||..++..|..++|+|+.++..... +......-. +.++
T Consensus 243 lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (484)
T PRK14956 243 IGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLADRESVNFPKEDLQKMKSDF 322 (484)
T ss_pred hCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhhccCCHHHHHHHHHHH
Confidence 999999999999999999875 6899999999999999999999999999999987754211 111111111 2234
Q ss_pred CcccHHHHHHHHHHHH----HH-HHHhccCCCHHHHHHHHHHHcCCCc
Q 036794 719 SKEEMEKLRQALKTLS----EA-EKQLRMSNDKLTWLTAALLQLAPDQ 761 (1152)
Q Consensus 719 s~~s~~kL~qaL~~L~----ea-D~qLK~s~dprl~LE~lLLkLa~~~ 761 (1152)
..++...|.+++..|. .+ +.++|++.+|+++||+++++||.+.
T Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~r~~~E~~~~~l~~~~ 370 (484)
T PRK14956 323 ENVDSSKLNFLSGKLFEIYEKIKTIRLRNSFEIKVFTEIQIKKLVEEL 370 (484)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHhccc
Confidence 5788888888766553 22 4678999999999999999999643
No 17
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.1e-48 Score=465.82 Aligned_cols=353 Identities=25% Similarity=0.460 Sum_probs=327.9
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
+.|+.|++||||++|+|||||+++++.|.+++..++++|+|||+||+|+|||++|++||+.++|.......||+.|..|.
T Consensus 1 Msy~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr 80 (709)
T PRK08691 1 MAYQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT 80 (709)
T ss_pred CcchhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999998877779999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.+.+++++++....+++.++++++.+.+.|+.++++||||||+|+|+..++++|+++||+++.+++|||+|+++.
T Consensus 81 ~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~ 160 (709)
T PRK08691 81 QIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH 160 (709)
T ss_pred HHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 99999999999999888899999999999998889889999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~EdV~el 644 (1152)
+++.+|++||..|.|.+++.+++..+|..++.++|+.++++++.+|++.++||+|+++++|++++.++ +.|+.++|.++
T Consensus 161 kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~It~e~V~~l 240 (709)
T PRK08691 161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQM 240 (709)
T ss_pred ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987764 57999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhh---cchhHHHHHHhCCCCcc
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT---KDRHRRKFFRRQPLSKE 721 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~---~g~~~~~~~~r~~ls~~ 721 (1152)
++...+..+|+|++++..+|...++..+++|+..|.++..++..|..++++|+..+..-. ........+.. .+..+
T Consensus 241 LG~~d~~~If~LldAL~~~d~~~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~a~~~ 319 (709)
T PRK08691 241 IGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSALAHDDPDSDILHR-LAQTI 319 (709)
T ss_pred HcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCchhccccchHHHHHHH-HHHcC
Confidence 999999999999999999999999999999999999999999999999999998764321 11112223322 24578
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 722 EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 722 s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+.+.|..+++++.+....|+.+.++++.||++|++|+.
T Consensus 320 ~~~~l~~~~q~~l~~~~~l~~a~~~~~~~Em~llrl~~ 357 (709)
T PRK08691 320 SGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLA 357 (709)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999974
No 18
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.9e-49 Score=469.28 Aligned_cols=447 Identities=21% Similarity=0.374 Sum_probs=376.2
Q ss_pred cccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC----CCCCCCC
Q 036794 405 NGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE----QPKPCGF 480 (1152)
Q Consensus 405 ~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e----~~epcg~ 480 (1152)
.+.|++|++||||++|+|++||++++..|.+++..++++|+|||+||+|||||++|++||+.++|.... ...||+.
T Consensus 5 ~~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 5 SNQYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred cccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 466999999999999999999999999999999999999999999999999999999999999997532 2479999
Q ss_pred CCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEE
Q 036794 481 CNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILV 560 (1152)
Q Consensus 481 c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILa 560 (1152)
|..|..+..+.+.+++++++.+..++++++++++.+.+.|++++++||||||+|+|+..++++|+++||+++.+++||++
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~a 164 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFA 164 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEE
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC----CC
Q 036794 561 SSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ----RI 636 (1152)
Q Consensus 561 TN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~----~I 636 (1152)
|+++++++++|.+||+.++|.+++..++..+|..+++++|+.++++++++|+..++|++|+++++|++++.+++ .|
T Consensus 165 Tte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~~~~~I 244 (507)
T PRK06645 165 TTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAKSDNII 244 (507)
T ss_pred eCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999966532 69
Q ss_pred CHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhh--cchh--HHHH
Q 036794 637 SVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT--KDRH--RRKF 712 (1152)
Q Consensus 637 T~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~--~g~~--~~~~ 712 (1152)
|.++|.++++...++++|+|++++..+|..+|+..+++|+..|++|..++..|+.+++.|+.++.... .... ....
T Consensus 245 t~~~V~~llg~~~~~~if~L~~ai~~~d~~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~~k~~~~~~~~~~~~~~~~ 324 (507)
T PRK06645 245 SPQVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNYSLPIYESFNDR 324 (507)
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccccccccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998765331 1111 1111
Q ss_pred HHhCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCCCCCCCCccccccCCCCcccc
Q 036794 713 FRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRK 792 (1152)
Q Consensus 713 ~~r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~s~~~~~~~~~~~~~~~~~~~ 792 (1152)
+. ..+..++...|.++++.|.+...++|.+.+|++++|+++++||.... .|+ ....+ +
T Consensus 325 ~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~l~r~~~~~~--lp~------~~~~~-------~------ 382 (507)
T PRK06645 325 TK-SILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSIYSTS--LPL------LTDFD-------G------ 382 (507)
T ss_pred HH-HHHHhCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhcc--CCC------ccccc-------C------
Confidence 11 22347899999999999999999999999999999999999995211 111 00000 0
Q ss_pred CCcccccccccCCCCccccccccccCCCCccccCCccccccccccccCCCCccccCCCCCCCCCCCCCCCChhhHHHHHH
Q 036794 793 GGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWL 872 (1152)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iW~ 872 (1152)
. .++. +.+ +.+. + . .. .-|.
T Consensus 383 -~----------------------~~~~--------~~~------------~~~~--~-~-------~~-------~~~~ 402 (507)
T PRK06645 383 -N----------------------NQNL--------NQS------------INPE--I-K-------KK-------FEIV 402 (507)
T ss_pred -C----------------------CCCC--------CCC------------CCCC--C-C-------cc-------cCHH
Confidence 0 0000 000 0000 0 0 00 1288
Q ss_pred HHHHHhccch---HHHHHHhcCeEeEEecCCCCeEEEEeCCchhhhhHHHhHHHHHHHHHHHhCCcEEEEEE
Q 036794 873 EVLNRIQNNG---TKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIR 941 (1152)
Q Consensus 873 ~vl~~~~~~~---l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~~e~~~~~Ie~~~~~vlg~~v~v~i~ 941 (1152)
++++.+..+. |+..|...-+|+.+.+| .+++.+... ..++...+.+.|+...|..-.|.+.
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~l~~~l~~~t~~~w~~~~~ 466 (507)
T PRK06645 403 DFLEYLYKNNEIDIYYFLLNHTELKNLSDN---RLEFVSLEV-----TSKIKKQIEDLLAAFTNEKFEIIII 466 (507)
T ss_pred HHHHHHHhcccHHHHHHHHhcceeeeecCC---eEEEEeCCC-----cHHHHHHHHHHHHHHhCCCeEEEec
Confidence 8888887553 66667778889999874 466666633 3346789999999999998887744
No 19
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=6.7e-48 Score=464.65 Aligned_cols=352 Identities=26% Similarity=0.430 Sum_probs=324.5
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
|.|+.|.+||||++|++||||++++..|.+++..++++|+|||+||+|+|||++|++||+.++|.......||+.|..|.
T Consensus 1 msy~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~ 80 (647)
T PRK07994 1 MSYQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80 (647)
T ss_pred CCchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999998666678999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..|.+.|++++++....++++++++++.+.+.|..++++||||||+|+|+..++|+||++||+|+.+++||++|+++.
T Consensus 81 ~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~ 160 (647)
T PRK07994 81 EIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (647)
T ss_pred HHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcc
Confidence 99999999999999887789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
+++++|+|||+.|.|.+++.+++..+|..++..+++.++++++..|+..++|++|+++++++++..+ ++.|+.++|.++
T Consensus 161 kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~~~~~it~~~v~~~ 240 (647)
T PRK07994 161 KLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDVSAM 240 (647)
T ss_pred ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997666 457999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc---hh-HHHHHHhCCCCc
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD---RH-RRKFFRRQPLSK 720 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g---~~-~~~~~~r~~ls~ 720 (1152)
++....+.++++++++..+|...++.++..|+..|.++..++..|+.++|+++..+...... .. ....+ ...+.+
T Consensus 241 lg~~d~~~~~~ll~al~~~d~~~~l~~~~~l~~~g~d~~~~L~~l~~~lrdil~~q~~~~~~~~~~~d~~~~l-~~la~~ 319 (647)
T PRK07994 241 LGTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELLELLHRIAMAQLLPAALDNDMADIELRL-RELART 319 (647)
T ss_pred HccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccchhcccchhHHHHH-HHHHHh
Confidence 99988889999999999999999999999999999999999999999999999876432211 11 11111 122357
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 721 EEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 721 ~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
++.+.|..+++++.++..+|+...++++.||+++++|.
T Consensus 320 ~s~~~l~~~~q~~~~~~~~L~~n~n~~l~lE~~llr~~ 357 (647)
T PRK07994 320 LPPEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRML 357 (647)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999986
No 20
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.1e-49 Score=475.48 Aligned_cols=353 Identities=25% Similarity=0.433 Sum_probs=326.0
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
|.|+.|++||||++|++||||+++++.|.+++..++++|.|||+||+|||||++|++|++.++|.......||+.|..|.
T Consensus 1 MsY~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr 80 (830)
T PRK07003 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80 (830)
T ss_pred CccHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999998766778999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.+.+++++++..+.++++++++++.+.+.|..++++||||||+|+|+...+|+||++||+++.+++|||+||+++
T Consensus 81 ~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred HHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence 99999999999999988899999999999998889889999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
+|+++|+|||+.|+|.+++.+++.++|.+++..+|+.++++++..|++.++|++|+++++|+++..+ .+.|+.+.|.++
T Consensus 161 KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V~~~ 240 (830)
T PRK07003 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGM 240 (830)
T ss_pred hccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997655 467999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhh---cchhHHHHHHhCCCCcc
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT---KDRHRRKFFRRQPLSKE 721 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~---~g~~~~~~~~r~~ls~~ 721 (1152)
++......+++++++++.+|...++..+++|+..|.++..++..|+.++++++..+..-. ........+. ....++
T Consensus 241 LG~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~~~~~~e~~~~~-~~a~~~ 319 (830)
T PRK07003 241 LGALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLDEWPEAADLR-RFAELL 319 (830)
T ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCccccccccchHHHHH-HHHHhC
Confidence 999999999999999999999999999999999999999999999999999988654221 1111111111 123578
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 722 EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 722 s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+.+.|+.+++++......|+.+.++++.||++||+|+.
T Consensus 320 s~~~l~~~~qi~l~g~~el~~ap~~~~~~Em~llr~l~ 357 (830)
T PRK07003 320 SPEQVQLFYQIATVGRGELGLAPDEYAGFTMTLLRMLA 357 (830)
T ss_pred CHHHHHHHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999874
No 21
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.2e-47 Score=456.61 Aligned_cols=489 Identities=23% Similarity=0.375 Sum_probs=380.4
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.|++|++||||++|++++||++++..|.+++..++.+|+|||+||+|+|||++|++||+.++|.......||+.|..|..
T Consensus 2 ~y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~ 81 (546)
T PRK14957 2 SYQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVA 81 (546)
T ss_pred CchhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999987666789999999999
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
+..+.+.+++++++....++++++++++.+...|+.++++||||||+|+|+..++++|+++||+||..++||++|+++.+
T Consensus 82 i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~k 161 (546)
T PRK14957 82 INNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHK 161 (546)
T ss_pred HhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhh
Confidence 99999999999988788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHHH
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELV 645 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~elV 645 (1152)
++++|++||+.|.|.+++.+++..+|..+++++|+.++++++.+|+..++||+|.++++|++++.+ ++.|+.++|.+++
T Consensus 162 il~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~~~It~~~V~~~l 241 (546)
T PRK14957 162 IPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQML 241 (546)
T ss_pred hhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998766 6689999999999
Q ss_pred hccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHH-HHHHHHHhchhhhhcch---hHHHHHHhCCCCcc
Q 036794 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLA-TVITDILAGSYDFTKDR---HRRKFFRRQPLSKE 721 (1152)
Q Consensus 646 g~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La-~qiRdLL~ak~~~~~g~---~~~~~~~r~~ls~~ 721 (1152)
+....+.+|++++++..+|...++..++.|...|.+...++..|. .+++ ++..+....... ....... ..+.++
T Consensus 242 ~~~~~~~v~~ll~Al~~~d~~~~l~~~~~l~~~~~~~~~~l~~l~~~~~r-~~~~~~~~~~~~~~~~~~~~i~-~~a~~~ 319 (546)
T PRK14957 242 GIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAEIWFA-CCIYSFTQSLDAVNDIDVDIIN-NILAKI 319 (546)
T ss_pred ccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHhcccccccchhhHHHHH-HHHHhC
Confidence 999888999999999999999999999999999999999999998 4555 555443222111 1111222 223578
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCC-CCCCCCccccccCCCCccccCCcccccc
Q 036794 722 EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADT-SFSHSPLDLENAGGRGMTRKGGERAEIS 800 (1152)
Q Consensus 722 s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1152)
+.+.|..+++++.++...|+...++++.||++|++++.- .|...... .....|. . .....
T Consensus 320 s~~~l~~~~~~~~~~~~~l~~~~~~~~~~em~l~r~~~~----~p~~~~~~~~~~~~~~------~---~~~~~------ 380 (546)
T PRK14957 320 SIEQAHFLYQLTITAKKDIALAPNFETGVTMAILRLIAF----QKKNLIDKTQTSKSNI------S---PIVSK------ 380 (546)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc----CCCCCCcccccccCCC------C---ccccc------
Confidence 999999999999999999999999999999999999842 22111000 0000000 0 00000
Q ss_pred cccCCCCccccccccccCCCCccccCCccccccccccccCCCCccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHHhcc
Q 036794 801 NKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQN 880 (1152)
Q Consensus 801 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iW~~vl~~~~~ 880 (1152)
.+. ..++...+ . ..+.. . ..+.+...+..... ....... ...-|..++.+++-
T Consensus 381 -----~~~-~~~~~~~~----~----~~~~~---~------~~~~~~~~~~~~~~-~~~~~~~---~~~~w~~~~~~l~~ 433 (546)
T PRK14957 381 -----NDI-NLLKNTFK----S----EQPKQ---T------VKAVVAQNNDSTAS-ENTQEQS---LDKKWFNLLNRIKL 433 (546)
T ss_pred -----ccc-cccccccc----c----ccccc---C------CCCCCccCCCCCCC-CCCCCCc---ccCCHHHHHHHhcc
Confidence 000 00000000 0 00000 0 00000000000000 0000000 02339999999987
Q ss_pred chHHHHHHhcCeEeEEecCCCCeEEEEeCCchhhhhH--HHhHHHHHHHHHHHhCCcEEEEEEEecccc
Q 036794 881 NGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKA--EKFKDQILQAFESVLGSPLTIEIRCESKID 947 (1152)
Q Consensus 881 ~~l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~~--e~~~~~Ie~~~~~vlg~~v~v~i~~~~~~d 947 (1152)
..+-..|.+++.+.+... ..+++........... ......++.+++..+|+++ |.+.+....+
T Consensus 434 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~ 498 (546)
T PRK14957 434 KGFTKTLAFNSHLISDNS---ETFVIHLNEDAKKILELDPQSIAKLQASISEYLNNPS-FRLDIKNLAM 498 (546)
T ss_pred cHHHHHHHhcchhhcccC---CeEEEEeCcchHHHhccChhHHHHHHHHHHHHcCCCc-eEeecCcccc
Confidence 665556678899998865 4677777765533332 5556789999999999999 8877665554
No 22
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.9e-49 Score=467.78 Aligned_cols=352 Identities=26% Similarity=0.410 Sum_probs=326.4
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.|++|++||||++|++||||+++++.|.+++..++++|+|||+||+|+|||++|++||+.++|.......||+.|..|..
T Consensus 1 ~Y~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~ 80 (702)
T PRK14960 1 MYQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKA 80 (702)
T ss_pred CchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999987777799999999999
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
+..|.+.++++++++.+.++++++++++.+.+.|..++++||||||+|+|+..++++|+++||+++.++.||++|+++.+
T Consensus 81 I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~k 160 (702)
T PRK14960 81 VNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQK 160 (702)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHh
Confidence 99999999999999888899999999999988888899999999999999999999999999999999999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHHH
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELV 645 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~elV 645 (1152)
++.+|++||++|.|.+++.+++..+|..++.++|+.++++++..|+..++||+|+++++|+++..+ .+.||.++|.+++
T Consensus 161 Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~g~IT~edV~~lL 240 (702)
T PRK14960 161 LPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEML 240 (702)
T ss_pred hhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999998766 4579999999999
Q ss_pred hccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchh----HHHHHHhCCCCcc
Q 036794 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH----RRKFFRRQPLSKE 721 (1152)
Q Consensus 646 g~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~----~~~~~~r~~ls~~ 721 (1152)
+....+.+|++++++..+|...++..++++...|.++..++..|..++++++..++....... ....+. ..+..+
T Consensus 241 G~~d~e~IfdLldAI~k~d~~~al~~L~el~~~g~d~~~~l~~Ll~~lrdlll~~~~~~~~~~~~~~~~~~~~-~la~~~ 319 (702)
T PRK14960 241 GLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELGLKYSEEINAKIL-QLSKLI 319 (702)
T ss_pred ccCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHH-HHHHcC
Confidence 999999999999999999999999999999999999999999999999999987654322111 111121 123478
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 722 EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 722 s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+...|..+++++.+...+||.+.+++++||+++++||.
T Consensus 320 s~~~l~~~~qi~l~~~~~l~~s~~~r~~lEm~llrl~~ 357 (702)
T PRK14960 320 SAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLA 357 (702)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999985
No 23
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=9.1e-49 Score=469.65 Aligned_cols=356 Identities=27% Similarity=0.466 Sum_probs=328.9
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.|+.|++||||++|++|+||+.++..|.+++..++++|+||||||+|+|||++|++||+.++|.......||+.|..|..
T Consensus 2 ~y~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~ 81 (563)
T PRK06647 2 SYRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKS 81 (563)
T ss_pred CcHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999987777789999999999
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
+..+...+++++++....++++++++.+.+...|+.++++||||||+|+|+..++++|+++||+||..++||++|+++.+
T Consensus 82 i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~k 161 (563)
T PRK06647 82 IDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHK 161 (563)
T ss_pred HHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHH
Confidence 99999999999998777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHHH
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELV 645 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~elV 645 (1152)
++++|++||+.+.|.+++.+++..+|..+++.+|+.++++++.+|+..++||+|.+.++|++++.+ ++.||.++|.+++
T Consensus 162 L~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~~~It~e~V~~ll 241 (563)
T PRK06647 162 LPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSKM 241 (563)
T ss_pred hHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999998766 5579999999999
Q ss_pred hccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcch---hHHHHHHhCCCCccc
Q 036794 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR---HRRKFFRRQPLSKEE 722 (1152)
Q Consensus 646 g~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~---~~~~~~~r~~ls~~s 722 (1152)
+...++.+|++++++..+|..+++.++..|+..|++|..++..|+++||+|+.++....... .....+. ..+.+|+
T Consensus 242 g~~~~~~if~LidaI~~~D~~~al~~l~~Ll~~G~d~~~iL~~Ll~~fRdLL~vK~G~~~~~~l~~~~e~l~-k~~~~~s 320 (563)
T PRK06647 242 GLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKNEAFIGIKAERLP-EKLREFD 320 (563)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCchhhhccccHHHHH-HHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999875332110 0111122 2334699
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCccc
Q 036794 723 MEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQY 763 (1152)
Q Consensus 723 ~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~ 763 (1152)
.+.|.++++.|.+++.++|++.+++++||+++++||....+
T Consensus 321 ~~~L~~~l~~Llea~~~lK~n~~~~l~lE~llikl~~~~~~ 361 (563)
T PRK06647 321 LSQIERAISVLLETYRDLQFSVNPRYELEINFSKILRLKDY 361 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccC
Confidence 99999999999999999999999999999999999975433
No 24
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.5e-49 Score=467.03 Aligned_cols=353 Identities=26% Similarity=0.448 Sum_probs=323.5
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCC-----CCCCCCCC
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL-----EQPKPCGF 480 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~-----e~~epcg~ 480 (1152)
|.|+.|++||||++|+|||||+++++.|.+++..++++|.|||+||+|||||++|++|++.++|... ....|||.
T Consensus 1 Msy~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~ 80 (700)
T PRK12323 1 MSYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQ 80 (700)
T ss_pred CcchhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcc
Confidence 3589999999999999999999999999999999999999999999999999999999999999532 23479999
Q ss_pred CCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEE
Q 036794 481 CNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILV 560 (1152)
Q Consensus 481 c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILa 560 (1152)
|..|..+..|.+.+++++++.++.++++++++++.+.+.|..++++||||||+|+|+..++|+||++||+++.+++|||+
T Consensus 81 C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILa 160 (700)
T PRK12323 81 CRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILA 160 (700)
T ss_pred cHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEE
Confidence 99999999999999999999888999999999999999898899999999999999999999999999999999999999
Q ss_pred cCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHH
Q 036794 561 SSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVP 639 (1152)
Q Consensus 561 TN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~E 639 (1152)
||++++++++|+|||+.|.|.+++.+++.++|.+++.++|+.+++++++.|+..++|++|+++++++++..+ ++.|+.+
T Consensus 161 Ttep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~~~~~It~~ 240 (700)
T PRK12323 161 TTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEE 240 (700)
T ss_pred eCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997655 4679999
Q ss_pred HHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhh---cchhHHHHHHhC
Q 036794 640 LVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT---KDRHRRKFFRRQ 716 (1152)
Q Consensus 640 dV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~---~g~~~~~~~~r~ 716 (1152)
.|.++++....+.++++++.+..+|...++..++.+...|.++..++..|...+++++..+..-. ........+. .
T Consensus 241 ~V~~~LG~~d~~~i~~Ll~aL~~~d~~~~l~l~~~l~~~G~d~~~~L~dLl~~l~~l~l~q~~~~~~~~~~~~~~~~~-~ 319 (700)
T PRK12323 241 AVRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAVQDDWPEADDIR-R 319 (700)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCchhcccccchHHHHH-H
Confidence 99999999999999999999999999999999999999999999999999999999988653221 1111111111 2
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 717 PLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 717 ~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
...+++.+.|+.+++++.+...+|+.+.++++.||++|++|+.
T Consensus 320 ~a~~~s~~~l~~~~q~~~~~~~el~~a~~~~~~~Em~llrll~ 362 (700)
T PRK12323 320 LAGRFDAQEVQLFYQIANLGRSELALAPDEYAGFTMTLLRMLA 362 (700)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh
Confidence 3457899999999999999999999999999999999999984
No 25
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.7e-48 Score=450.06 Aligned_cols=353 Identities=30% Similarity=0.507 Sum_probs=326.6
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCC--------CCCCCC
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL--------EQPKPC 478 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~--------e~~epc 478 (1152)
.++.+++||||++|++|+||+.++..|.+++..++.+|+|||+||+|+|||++|++||+.++|... ....||
T Consensus 2 ~~~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c 81 (397)
T PRK14955 2 SYQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPC 81 (397)
T ss_pred ccHHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCC
Confidence 377899999999999999999999999999999999999999999999999999999999999632 124799
Q ss_pred CCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEE
Q 036794 479 GFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFI 558 (1152)
Q Consensus 479 g~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifI 558 (1152)
+.|..|..+..+.+.++.++++....++++++++.+.+...|++++++||||||+|.|+...++.|+++||+|+..++||
T Consensus 82 ~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~I 161 (397)
T PRK14955 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFI 161 (397)
T ss_pred CCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEE
Confidence 99999999999999999999887778899999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-----
Q 036794 559 LVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG----- 633 (1152)
Q Consensus 559 LaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg----- 633 (1152)
++|+++.++.++|.+||+.+.|.+++.+++..|+..+++.+|+.++++++++|+..++||+|.+.++|+++..+.
T Consensus 162 l~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~~~~~ 241 (397)
T PRK14955 162 FATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVESEG 241 (397)
T ss_pred EEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997763
Q ss_pred -CCCCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHH-H
Q 036794 634 -QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRR-K 711 (1152)
Q Consensus 634 -~~IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~-~ 711 (1152)
+.||.++|.++++...++++|++++++..++...|+.+++.|+..|++|..|+..|.++||+++.++.....+.... .
T Consensus 242 ~~~It~~~v~~~v~~~~~~~vf~l~~ai~~~~~~~al~~~~~l~~~~~~~~~iL~ll~~~~R~ll~~k~~~~~~~~~~~~ 321 (397)
T PRK14955 242 EGSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNLRSTRLVERPD 321 (397)
T ss_pred CCccCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccccccccCCH
Confidence 36999999999999999999999999999999999999999999999999999999999999999888765543222 2
Q ss_pred HHH---hCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 712 FFR---RQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 712 ~~~---r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+.. ..++.+|+.+.|.++++.+.++|.+||+..+++++||.++++|+.
T Consensus 322 ~~~~~~~~~a~~~s~~~L~~~l~~l~e~d~~lK~~~~~~l~lE~lll~l~~ 372 (397)
T PRK14955 322 AVRERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIE 372 (397)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 221 234568999999999999999999999999999999999999985
No 26
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.2e-47 Score=439.93 Aligned_cols=352 Identities=27% Similarity=0.459 Sum_probs=325.8
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.|++|++||||++|++|+||+++++.|.+++..++.+|+|||+||+|+|||++|+++|+.++|.......||+.|..|..
T Consensus 2 ~~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~ 81 (363)
T PRK14961 2 NYQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKE 81 (363)
T ss_pred CcHHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999987667789999999999
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
+..+.+.++.++++.....+++++++++.+...|+.+.++||||||+|+|+..++++|+++||+++.++.||++|+++++
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 99999999999988777889999999999988898899999999999999999999999999999999999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHHHHHHHH
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELV 645 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~EdV~elV 645 (1152)
++++|.+||+.+.|++++.+++.++|..+++.+|+.++++++++|+..++||+|.+++.|++++.++ +.||.++|.+++
T Consensus 162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~~~It~~~v~~~l 241 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDML 241 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987664 579999999999
Q ss_pred hccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchh-----HHHHHHhCCCCc
Q 036794 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH-----RRKFFRRQPLSK 720 (1152)
Q Consensus 646 g~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~-----~~~~~~r~~ls~ 720 (1152)
+...+..+|++++++..+|...++..++.|+..|++|..|+..|..++|+++..+........ ....+ ...+.+
T Consensus 242 ~~~~~~~i~~l~~ai~~~~~~~~~~~~~~l~~~g~~~~~il~~l~~~~~d~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 320 (363)
T PRK14961 242 GLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPKIWNTIFIKNYKNQI-QKIAQN 320 (363)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhcccchHHHHHH-HHHHHc
Confidence 999999999999999999999999999999999999999999999999999997754322110 11122 223457
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 721 EEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 721 ~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
++.+.|.++++.+.++..+||.+.+++++||+++++|+.
T Consensus 321 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~e~~l~~~~~ 359 (363)
T PRK14961 321 NKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAIN 359 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999984
No 27
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=8.5e-48 Score=454.96 Aligned_cols=350 Identities=31% Similarity=0.558 Sum_probs=326.1
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
|.|.+|++||||++|++++||+.++..|.+++..++++|+||||||+|+|||++|+++|+.++|.......||+.|.+|.
T Consensus 1 m~y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~ 80 (486)
T PRK14953 1 MMYIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80 (486)
T ss_pred CCchHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999997666668999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.++++++++++.+.++++++.+.+.+...|+.+.++||||||+|+|+.+++++|+++|++|+.+++||++|++++
T Consensus 81 ~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~ 160 (486)
T PRK14953 81 EIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYD 160 (486)
T ss_pred HHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHH
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
+++++|.+||+.+.|.+++..++..||..+++.+|+.++++++++|+..++||+|.+.++|++++.+ ++.||.++|.++
T Consensus 161 kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~~~~It~~~V~~~ 240 (486)
T PRK14953 161 KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEF 240 (486)
T ss_pred HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999766 457999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcch--hHHHHHHhCCCCccc
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR--HRRKFFRRQPLSKEE 722 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~--~~~~~~~r~~ls~~s 722 (1152)
++....+++|+|++++..+|...|+.+++.|+..|.+|..++..|..+||+++.++....... ....+... ..++
T Consensus 241 lg~~~~~~vf~Li~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~~rdll~~k~~~~~~~~~~~~~~~~~---~~~~ 317 (486)
T PRK14953 241 LGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSLKNPEEVFQVEDFYRK---LEKP 317 (486)
T ss_pred hCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCChhhhcchHHHHHH---hcCC
Confidence 999999999999999999999999999999999999999999999999999999775432211 11123322 5688
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 723 MEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 723 ~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
.+.|..+++.+.++..+||+ .+++++||++++++|.
T Consensus 318 ~~~l~~~~~~~~~~~~~l~~-~~~~~~~E~~ll~l~~ 353 (486)
T PRK14953 318 LEALLYLEDVINKAFSEART-RDPLRAYELAILKLLY 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHh
Confidence 99999999999999999999 9999999999999995
No 28
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.7e-47 Score=466.39 Aligned_cols=353 Identities=27% Similarity=0.466 Sum_probs=323.9
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
|.|++|++||||++|++||||++++..|++++..++++|+|||+||+|||||++|++||+.++|.......||+.|..|.
T Consensus 1 MsY~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~ 80 (944)
T PRK14949 1 MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80 (944)
T ss_pred CCchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999998655557999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.+.+++++++....+++.++++++.+.+.|..++++||||||+|+|+.+++++||++||+|+.+++||++|+++.
T Consensus 81 ~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~ 160 (944)
T PRK14949 81 EIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQ 160 (944)
T ss_pred HHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCch
Confidence 99999999999999877789999999999998888889999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
+++++|++||++|.|.+++.+++..+|..++..+++.++++++..|+..++|++|.++++|+++..+ .+.|+.+.|.++
T Consensus 161 kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~~~It~~~V~~l 240 (944)
T PRK14949 161 KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQVQTM 240 (944)
T ss_pred hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987655 467999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc--hhHHHHHHhCCCCccc
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD--RHRRKFFRRQPLSKEE 722 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g--~~~~~~~~r~~ls~~s 722 (1152)
++......+..+++.+..+|...++.++..|+..|+++..|+..|..+||+++..+...... ......++ ..+.+++
T Consensus 241 lG~iD~~~V~~llksI~~~D~~aaL~~l~~Ll~~G~D~~~ILr~Ll~~lRDill~k~~~~~~~l~i~~e~i~-~~a~~~s 319 (944)
T PRK14949 241 LGSIDEQHVIALLKALTDADIGVLMQTCAQVLAFGADAQEVLRSLLELLHQITLTQFAPAAAQQSLYSEQIR-AFAEQLS 319 (944)
T ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhccchHHHHH-HHHHhCC
Confidence 99998888999999999999999999999999999999999999999999999876433211 11112222 2345799
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 723 MEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 723 ~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
.+.|..+++++.++..+||...++++.||++|++++.
T Consensus 320 ~~~L~~~ie~l~~a~~~L~~n~n~rl~lE~~LLrl~~ 356 (944)
T PRK14949 320 PEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVA 356 (944)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999884
No 29
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.2e-46 Score=441.25 Aligned_cols=448 Identities=26% Similarity=0.445 Sum_probs=368.9
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
+.|++||||++|++++||++++..|.+++..++++++|||+||||||||++|+++|+.++|.......||+.|..|..+.
T Consensus 2 ~~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~ 81 (472)
T PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81 (472)
T ss_pred chhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999999999998877789999999999999
Q ss_pred CCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcch
Q 036794 489 RGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALP 568 (1152)
Q Consensus 489 ~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~ 568 (1152)
.+...++.+++++...+++.++++.+.+...|+++.++||||||+|.|+.++++.|+++|++++.+++||++|+++.+++
T Consensus 82 ~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~ 161 (472)
T PRK14962 82 EGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVP 161 (472)
T ss_pred cCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhh
Confidence 99999999999988888999999999988888889999999999999999999999999999999999999999988999
Q ss_pred HHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHhc
Q 036794 569 HIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELVGL 647 (1152)
Q Consensus 569 ~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~elVg~ 647 (1152)
++|.+||+.+.|.+++..++..+|+.+++.+|+.++++++++|+.+++||+|.++|+|++++.+ ++.||.++|.++++.
T Consensus 162 ~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~ 241 (472)
T PRK14962 162 PTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGL 241 (472)
T ss_pred HHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999998766 457999999999999
Q ss_pred cchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHHHHH
Q 036794 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLR 727 (1152)
Q Consensus 648 v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~kL~ 727 (1152)
..++.+|++++++..+|...|+.+|.+|+..|++|..|+..|.......+- ..+...+.
T Consensus 242 ~~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~---------------------~a~~~~~~ 300 (472)
T PRK14962 242 IPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLE---------------------RERANDII 300 (472)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc---------------------CCCchHHH
Confidence 999999999999999999999999999999999999999988776543211 11235566
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCCCCCCCCccccccCCCCccccCCcccccccccCCCC
Q 036794 728 QALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVP 807 (1152)
Q Consensus 728 qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (1152)
.++..+.++-..++....+..+++++++++|.+ .++. ..+...
T Consensus 301 ~~~~~~~~~~~~i~~~e~~~~l~~~~~~~~~~~----~~~~------------------~~~~~~--------------- 343 (472)
T PRK14962 301 QVSRQLLNILREIKFAEEKRLVCKLGSASIATR----FSSP------------------NVQEND--------------- 343 (472)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHh----CCCh------------------hHHHHH---------------
Confidence 677788889999999999999999999999952 1110 000000
Q ss_pred ccccccccccCCCCccccCCccccccccccccCCCCccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHHhccc-hHHHH
Q 036794 808 MNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNN-GTKEF 886 (1152)
Q Consensus 808 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iW~~vl~~~~~~-~l~~~ 886 (1152)
+ .....+ .... ...+ .. ..+. ..+....+.+ ++..|.++++.++.+ .+..|
T Consensus 344 ----~----~~~~~~----~~~~---~~~~------~~--~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 395 (472)
T PRK14962 344 ----V----EEKNDN----SNVQ---QKEK------KK--EESK----AKEEKQEDIE-FEKRFKELMEELKEKGDLSIF 395 (472)
T ss_pred ----H----Hhhccc----cccc---cccc------hh--hhcc----chhhhhhhhh-HHHHHHHHHHHHHhcCchhhh
Confidence 0 000000 0000 0000 00 0000 0001112333 789999999999863 34555
Q ss_pred HHhcCeEeEEecCCCCeEEEEeCC--chhhhhHHHhHHHHHHHHHHHhCCcEEEEEEEecc
Q 036794 887 LYREGKLISVSFGAAPTVQLTFRS--HLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESK 945 (1152)
Q Consensus 887 l~~~gkl~s~~~~~~~~v~l~F~~--~~~~~~~e~~~~~Ie~~~~~vlg~~v~v~i~~~~~ 945 (1152)
+...-.++.+.. +++.|.|.. .+++...++.+..|+..+.+++|.+++|++.+..+
T Consensus 396 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (472)
T PRK14962 396 VALSLSEVEEDG---DKVKISFDSSKAMHYELMKEKLPELENLFSRKLGKNVEVELRLMGK 453 (472)
T ss_pred hhhccCCceeeC---CeEEEEeChHHhHHHHHHHHhHHHHHHHHHHHhCCCeeEEEEEecC
Confidence 533444444443 579999996 45666677889999999999999999999988444
No 30
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=100.00 E-value=1.5e-46 Score=425.97 Aligned_cols=350 Identities=39% Similarity=0.644 Sum_probs=323.5
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
|++|.+||||++|++++||+.++..|.+++..++.+|+||||||+|+|||++|+++++.+.|.......||+.|..|..+
T Consensus 1 ~~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~ 80 (355)
T TIGR02397 1 YQVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEI 80 (355)
T ss_pred CccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999865556899999999999
Q ss_pred cCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcc
Q 036794 488 DRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDAL 567 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL 567 (1152)
..+.+.++.++++....+.+.++++++.+...|++++++||||||+|.++..+++.|+++|++++.+++||++|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l 160 (355)
T TIGR02397 81 NSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKI 160 (355)
T ss_pred hcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHH
Confidence 99999999999887677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Q 036794 568 PHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646 (1152)
Q Consensus 568 ~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~EdV~elVg 646 (1152)
.++|++||..+.|++++.+++..||..+++++|+.+++++++.|+..++||+|.+.++|++++.++ +.||.++|+++++
T Consensus 161 ~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~~~it~~~v~~~~~ 240 (355)
T TIGR02397 161 PATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNITYEDVNELLG 240 (355)
T ss_pred HHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999998774 4699999999999
Q ss_pred ccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc--hhH--HHHHHhCCCCccc
Q 036794 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD--RHR--RKFFRRQPLSKEE 722 (1152)
Q Consensus 647 ~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g--~~~--~~~~~r~~ls~~s 722 (1152)
...+.++|++++++..+|...|+.++..|+..|.+|..|+..|.++|++|+.++...... ... ...+ .+++.+|+
T Consensus 241 ~~~~~~i~~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~~r~l~~~k~~~~~~~~i~~~~~~~l-~~~a~~~s 319 (355)
T TIGR02397 241 LVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLLAVLESEQEFL-KELALKLS 319 (355)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCHHHHHHH-HHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999987542111 111 1122 23567899
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 723 MEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 723 ~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
.+.|.++++.|.++|..+|++.+++++||.+++++|
T Consensus 320 ~~~L~~~l~~l~~~~~~lk~~~~~~l~le~l~~~~~ 355 (355)
T TIGR02397 320 LEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355 (355)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhC
Confidence 999999999999999999999999999999999998
No 31
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=100.00 E-value=2.5e-47 Score=415.63 Aligned_cols=323 Identities=50% Similarity=0.733 Sum_probs=284.7
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.++.|++||||++|++++||+.+++.|++++.. +..+.||||||||||||++|+++|++++| +...||++|..|..
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~-~~lp~~LFyGPpGTGKTStalafar~L~~---~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLR-RILPHYLFYGPPGTGKTSTALAFARALNC---EQLFPCRVLELNAS 97 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhh-cCCceEEeeCCCCCcHhHHHHHHHHHhcC---ccccccchhhhccc
Confidence 577899999999999999999999999999999 66667999999999999999999999999 34579999999999
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
...|.. +......++..+......... .....++||||||+|.|+.++|++|+++||.++..++||++||++++
T Consensus 98 derGis-----vvr~Kik~fakl~~~~~~~~~-~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 98 DERGIS-----VVREKIKNFAKLTVLLKRSDG-YPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred cccccc-----chhhhhcCHHHHhhccccccC-CCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhh
Confidence 988876 333333455555444432211 22256799999999999999999999999999999999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHH-HH
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQE-LV 645 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~e-lV 645 (1152)
++.+|.|||+.|.|+++++++++.+|+.||.+||++++++++++|+.+++||+|+|+.+||+++..+++||...+.+ +.
T Consensus 172 ii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~ 251 (346)
T KOG0989|consen 172 IIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLGKRITTSLVNEELA 251 (346)
T ss_pred CChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccCcccchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999655555 45
Q ss_pred hccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHHH
Q 036794 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEK 725 (1152)
Q Consensus 646 g~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~k 725 (1152)
|.++++.+.++++.++++|+.+..+.+++++..|.+|.+|+++|+..+.+++ ..+..........++.... ...++..
T Consensus 252 GvVp~~~l~~lle~a~S~d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~~-g~~d~~k~~~~~kl~~~~~-~~~dg~~ 329 (346)
T KOG0989|consen 252 GVVPDEKLLDLLELALSADTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDII-GLSDEQKAQISLKLFTRDK-RLEDGED 329 (346)
T ss_pred ccCCHHHHHHHHHHHHccChHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhccc-hhhcchh
Confidence 5999999999999999999999999999999999999999999999999987 6556666666666666554 6789999
Q ss_pred HHHHHHHHHHHHHHhc
Q 036794 726 LRQALKTLSEAEKQLR 741 (1152)
Q Consensus 726 L~qaL~~L~eaD~qLK 741 (1152)
++.+|..|++++.++.
T Consensus 330 l~~~L~~L~~~~~ql~ 345 (346)
T KOG0989|consen 330 LELALKDLLEAEKQLR 345 (346)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999875
No 32
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.3e-46 Score=450.33 Aligned_cols=355 Identities=26% Similarity=0.461 Sum_probs=325.6
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
+.|++|++||||++|+||+||+.++..|.+++..++++|+|||+||+|||||++|++||+.++|.......||+.|..|.
T Consensus 1 ms~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~ 80 (624)
T PRK14959 1 MSHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCR 80 (624)
T ss_pred CCcchHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999998766778999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.+.+++++++....++++++.+.+.+...|+.+.++||||||+|+|+.+++++|+++||+++.+++||++|++++
T Consensus 81 ~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~ 160 (624)
T PRK14959 81 KVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160 (624)
T ss_pred HHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChh
Confidence 99999999999999877889999999999998889999999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~EdV~el 644 (1152)
+++++|++||+.|.|.+++.+++..+|..++..+++.++++++++|+.+++||+|.++++|++++..+ +.||.++|.++
T Consensus 161 kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~g~~~It~d~V~~~ 240 (624)
T PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGV 240 (624)
T ss_pred hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986553 47999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc-----hhHHH--HHHhCC
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD-----RHRRK--FFRRQP 717 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g-----~~~~~--~~~r~~ 717 (1152)
++....+.+|++++++..+|...++.++..|+..|.++..++..|..+||+|+..+..-... ..... .+ ...
T Consensus 241 lg~~~~e~vfeLl~AL~~~D~~aal~~l~~Ll~~g~d~~~iL~~Ll~~~RdLLl~k~~~~~~~~~l~i~~~~~~~~-~~~ 319 (624)
T PRK14959 241 LGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAALASLDLPEDEARQW-LGW 319 (624)
T ss_pred hCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhccccchhhcccCHHHHHHH-HHH
Confidence 99999999999999999999999999999999999999999999999999999876432211 11111 11 123
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCc
Q 036794 718 LSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQ 761 (1152)
Q Consensus 718 ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~ 761 (1152)
+.+++...|..+++.+.++..+|+.+.++++.||++|++|+.-+
T Consensus 320 A~~~s~~~L~~~l~~il~~~~~l~~n~n~rl~lE~lLL~l~~~~ 363 (624)
T PRK14959 320 AKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLAMLP 363 (624)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 45799999999999999999999999999999999999998543
No 33
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=4.1e-46 Score=437.71 Aligned_cols=344 Identities=29% Similarity=0.530 Sum_probs=321.5
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC-CCCCCCCCCccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE-QPKPCGFCNSCI 485 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e-~~epcg~c~~c~ 485 (1152)
.|+.|.+||||++|+||+||+.++..|.+++..++++|+||||||+|+|||++|+++|+.+.|.... ...||+.|..|.
T Consensus 3 ~~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~ 82 (451)
T PRK06305 3 SYQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCK 82 (451)
T ss_pred chHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHH
Confidence 3889999999999999999999999999999999999999999999999999999999999997543 347999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.+.+++++++....++++++++.+.+...|..+.++||||||+|.|+.++++.|+++||+++.+++||++|+++.
T Consensus 83 ~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~ 162 (451)
T PRK06305 83 EISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIH 162 (451)
T ss_pred HHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChH
Confidence 99999999999998777788999999999888888889999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
++.++|++||+.+.|.+++.+++..||..+++++|+.+++++++.|+.+++||+|.++++|++++.+ ++.||.++|.++
T Consensus 163 kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~~~It~~~V~~l 242 (451)
T PRK06305 163 KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKA 242 (451)
T ss_pred hcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998766 567999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHH
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEME 724 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~ 724 (1152)
++...++++|+|++++..+|..+|+.++..|+..|++|..|+..|.++||+++.++.. ..+ .+...+|+.+
T Consensus 243 ~~~~~~~~vf~L~~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll~vk~~-------~~~--~~~a~~~s~~ 313 (451)
T PRK06305 243 LGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYN-------KQL--SSVATKYSSE 313 (451)
T ss_pred HCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHhhh-------hHH--HHHHHhCCHH
Confidence 9999999999999999999999999999999999999999999999999999998762 112 2235689999
Q ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 725 KLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 725 kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
.|.+++..+.++|+++|++.++.++||.++++++.
T Consensus 314 ~L~~ii~~l~e~d~~lk~~~~~k~~lE~lll~l~~ 348 (451)
T PRK06305 314 QLLEIIDFLGESAKHIQLTIFEKTFLETVIIHLIR 348 (451)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999985
No 34
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.4e-45 Score=446.64 Aligned_cols=347 Identities=33% Similarity=0.559 Sum_probs=316.3
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC-CCCCCCCCCcc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE-QPKPCGFCNSC 484 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e-~~epcg~c~~c 484 (1152)
+.|.+|++||||++|++|+||+.+++.|.+++..++++|+||||||+|+|||++|++||+.++|.... ...||+.|..|
T Consensus 3 m~y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~ 82 (725)
T PRK07133 3 MKYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN 82 (725)
T ss_pred cchhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh
Confidence 56899999999999999999999999999999999999999999999999999999999999997532 24689998888
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
. +.+.++++++++++.++++++++++.+...|+.++++||||||+|+|+.+++++|+++||+||.+++||++|+++
T Consensus 83 ~----~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~ 158 (725)
T PRK07133 83 V----NNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV 158 (725)
T ss_pred h----cCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCCh
Confidence 3 567788999888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHHHHHH
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQE 643 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~EdV~e 643 (1152)
++++++|++||+++.|.+++..++..+|..++.++|+.+++++++.|+..++|++|.++++|++++.++ +.|+.++|.+
T Consensus 159 ~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~~~It~e~V~e 238 (725)
T PRK07133 159 HKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEE 238 (725)
T ss_pred hhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987664 4699999999
Q ss_pred HHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcch---hHHHHHHhCCCCc
Q 036794 644 LVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR---HRRKFFRRQPLSK 720 (1152)
Q Consensus 644 lVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~---~~~~~~~r~~ls~ 720 (1152)
+++....+.+|++++++..++...++..+..|+..|.+|..++..|..++||++..+..-.... ....... .+ +
T Consensus 239 llg~~~~e~If~Ll~aI~~kd~~~aL~~l~~L~~~ged~~~iL~~Ll~~~RDlLl~k~~~~~~ll~~~d~~~l~--~~-~ 315 (725)
T PRK07133 239 LFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLEYYSEEDLE--KL-K 315 (725)
T ss_pred HHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHH--Hh-c
Confidence 9999999999999999999999999999999999999999999999999999998653221110 0011121 12 6
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 721 EEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 721 ~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
++...|.++++.+.++..+||.+.+++++||+++++|+.
T Consensus 316 ~s~~~l~~~le~i~~~~~~L~~n~n~~l~lE~lll~L~~ 354 (725)
T PRK07133 316 IDDDFAYKFIEILFDLLKDLKISDNPNDTLEILIIKLLA 354 (725)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 789999999999999999999999999999999999985
No 35
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.2e-43 Score=420.84 Aligned_cols=332 Identities=29% Similarity=0.476 Sum_probs=311.6
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
+.|++||||++|++++||+++++.|..++..++++|+||||||+|+|||++|++|++++.|.......||+.|..|..+.
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999999999998766678999999999999
Q ss_pred CCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcch
Q 036794 489 RGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALP 568 (1152)
Q Consensus 489 ~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~ 568 (1152)
.+.+.+++++++....+++.++++++.....|+.+.++||||||+|+|+.+++++||++||+||.+++||++|+++.+++
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence 99999999999877788999999999988889989999999999999999999999999999999999999999999999
Q ss_pred HHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHhc
Q 036794 569 HIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVGL 647 (1152)
Q Consensus 569 ~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~EdV~elVg~ 647 (1152)
++|+|||+.|+|.+++.+++..||..++.++|+.++++++.+|+..++||+|.++++|++++.++ +.||.++|.++++.
T Consensus 162 ~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~~~~It~~~V~~~lg~ 241 (535)
T PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLGL 241 (535)
T ss_pred hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999987774 57999999999999
Q ss_pred cchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHHHHH
Q 036794 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLR 727 (1152)
Q Consensus 648 v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~kL~ 727 (1152)
...+.++++++++..+|...++.++..| .|.++..++..|..++++++... -..+....+.
T Consensus 242 ~~~~~I~~li~ai~~~d~~~a~~~l~~L--~g~~~~~~l~~l~~~l~~~~~~~-----------------~~~~~l~~l~ 302 (535)
T PRK08451 242 LDPSKLEDFFQAILNQDKEKLFELLKEL--EDYEAEMVLDEMMLFLKEKFLSK-----------------DSEFSILLYE 302 (535)
T ss_pred CCHHHHHHHHHHHHhcCHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHhhcc-----------------cccccHHHHH
Confidence 9999999999999999999999999999 57999999999999998775321 1234556788
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 728 QALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 728 qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+.+.+|.+++..++.+.++++.|+++++++|.
T Consensus 303 r~~riL~~~k~~l~~g~~~~i~l~~~~~~~~~ 334 (535)
T PRK08451 303 RFFRILSSAKSLLKEGADDGFVLLLMLFKMKE 334 (535)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 88999999999999999999999999999995
No 36
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=8.6e-44 Score=424.34 Aligned_cols=351 Identities=28% Similarity=0.501 Sum_probs=313.2
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.+++|++||||++|++++||+.+++.|.+++..++.+|+|||+||+|+|||++|++||+.++|..+....||+.|..|..
T Consensus 2 ~~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~ 81 (605)
T PRK05896 2 SEITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCES 81 (605)
T ss_pred cchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999988777789999999999
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
+..+.+++++++++.+..++++++++++.+...|+.++++||||||+|+|+.+++++|+++||+|+.+++||++|+.+++
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK 161 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHh
Confidence 99999999999998878899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-CCCHHHHHHHH
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELV 645 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~-~IT~EdV~elV 645 (1152)
++++|++||+.+.|.+++..++..||..++.++|+.+++++++.|+..++|++|.++++|++++.+.+ .|+.++|.+++
T Consensus 162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~~It~e~V~ell 241 (605)
T PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKTF 241 (605)
T ss_pred hhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999887744 59999999999
Q ss_pred hccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc----hhHH--HHHH----h
Q 036794 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD----RHRR--KFFR----R 715 (1152)
Q Consensus 646 g~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g----~~~~--~~~~----r 715 (1152)
+....+.+|++++++..+|...++.++..|+..|++|..++..|..++||+|..+...... .... .+.. +
T Consensus 242 g~~~~~~Vf~Ll~AI~~kd~~~al~~l~~Ll~~ge~~~~il~~L~~~~RDlL~~k~~~~~~~L~~~~~~~~~~~~~~~~~ 321 (605)
T PRK05896 242 GLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLVYQKTKNINLLKKLSKEQLKTLNLEKQK 321 (605)
T ss_pred ccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhcCChhhhhcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999866433221 1111 1111 0
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCC
Q 036794 716 QPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760 (1152)
Q Consensus 716 ~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~ 760 (1152)
...-.|+...+ +..+.++-.+||.+.++..-+|..+.++..+
T Consensus 322 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (605)
T PRK05896 322 LLSIEFNTNFL---LNNFVSLINRLKASVNQVFEFEIYLYKIINA 363 (605)
T ss_pred HhhhhcccchH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence 01112333333 4455567778888999999999999998753
No 37
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.8e-42 Score=394.07 Aligned_cols=342 Identities=27% Similarity=0.457 Sum_probs=303.9
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
+++..|.+||||.+|++++||+.+++.|.+++..++.+++||||||+|+|||++|+++++.++|..... +|
T Consensus 2 ~~~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~--~~------- 72 (367)
T PRK14970 2 ENFVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDD--PN------- 72 (367)
T ss_pred cchHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--CC-------
Confidence 458899999999999999999999999999999999999999999999999999999999999853221 11
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+...++++++.....+.++++++++.+...|++++++||||||+|.++..+++.|+++|++++..++||++|+...
T Consensus 73 ---~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~ 149 (367)
T PRK14970 73 ---EDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKH 149 (367)
T ss_pred ---CCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcc
Confidence 11123456666656677899999999988889999999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
++.+++.+||..++|.+++.+++..|+..++.++|+.++++++++|+..++||+|.+.++|++++.+ ++.||.++|.++
T Consensus 150 kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~it~~~v~~~ 229 (367)
T PRK14970 150 KIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTEN 229 (367)
T ss_pred cCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999877 556999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc-hhHHHHHH---hCCCCc
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD-RHRRKFFR---RQPLSK 720 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g-~~~~~~~~---r~~ls~ 720 (1152)
++...++++|++++++..++..+++..++.|+..|++|..|+..|.++||+|+.++...... .....+.. .+++.+
T Consensus 230 ~~~~~~~~if~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~fr~ll~~k~~~~~~~l~~~~~~~~~~~~~a~~ 309 (367)
T PRK14970 230 LNILDYDTYINVTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALLEVGEQAKKRYEVQSQK 309 (367)
T ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCccccccCCHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999987632110 00001111 335679
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 721 EEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 721 ~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
|+.+.|.+++..|.++|.++|++.++++++|+++++||.
T Consensus 310 ~s~~~L~~~l~~l~~~d~~lK~~~~~~l~lE~~l~~l~~ 348 (367)
T PRK14970 310 VSQSFLLSGIDIANDCDLKYKLSKNQRLLVELALMQLAS 348 (367)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhh
Confidence 999999999999999999999988999999999999995
No 38
>PLN03025 replication factor C subunit; Provisional
Probab=100.00 E-value=9.4e-38 Score=352.21 Aligned_cols=307 Identities=18% Similarity=0.265 Sum_probs=269.1
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR 489 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~ 489 (1152)
+|.+||||++|++++||++++..|+.++..++.+| +||+||||||||++|+++|+++.|....
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~---------------- 64 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPN-LILSGPPGTGKTTSILALAHELLGPNYK---------------- 64 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHhcccCc----------------
Confidence 79999999999999999999999999999888876 8899999999999999999999875211
Q ss_pred CCccceEEeCCCCCCCHHHHHHHHHHHhhCC---CCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 490 GKSRNIKEVGPVGNFDFESILDLLDNMVTSR---PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 490 g~~~dviEIdaas~~~vdeIreLle~a~~~P---~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
..+.++++....+.+.+++.+..+...+ ..+.++||||||+|.|+..++++|++++|.++..+.||++||...+
T Consensus 65 ---~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~ 141 (319)
T PLN03025 65 ---EAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSK 141 (319)
T ss_pred ---cceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccc
Confidence 1256666665667778888776643322 2356899999999999999999999999999899999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVG 646 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg 646 (1152)
+.++|++||..+.|++++.+++..+|..+++++|+.++++++++|+..++||+|.++|+||.+....+.||.++|.++++
T Consensus 142 i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~ 221 (319)
T PLN03025 142 IIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGFVNQENVFKVCD 221 (319)
T ss_pred cchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999996554446799999999999
Q ss_pred ccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHHHH
Q 036794 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKL 726 (1152)
Q Consensus 647 ~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~kL 726 (1152)
....+.+|++++++..+|...|+..+.+|+..|++|..|+..|...++.. .++...-
T Consensus 222 ~~~~~~i~~~i~~~~~~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~-----------------------~~~~~~~ 278 (319)
T PLN03025 222 QPHPLHVKNIVRNCLKGKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNY-----------------------DMPEFLK 278 (319)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------------------CCCHHHH
Confidence 99999999999999999999999999999999999999999996655421 1222233
Q ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 727 RQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 727 ~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
..++..+.++|..+..|.++.+.|+.++.+++.
T Consensus 279 ~~~~~~~~~~~~~~~~g~~~~~~l~a~~~~~~~ 311 (319)
T PLN03025 279 LEYLREIGFAHMRICDGVGSLLQLSGLLAKLCL 311 (319)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999873
No 39
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=100.00 E-value=5.7e-36 Score=333.67 Aligned_cols=310 Identities=26% Similarity=0.394 Sum_probs=269.6
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
+..+|.+||||++|++++|++.++..|..++..+..++ +||+||+|||||++++++++++.+....
T Consensus 3 ~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~-~ll~G~~G~GKt~~~~~l~~~l~~~~~~------------- 68 (319)
T PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTTAALALARELYGEDWR------------- 68 (319)
T ss_pred ccCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCccc-------------
Confidence 45689999999999999999999999999999887775 7999999999999999999998765311
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHH-hhCCCC-CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNM-VTSRPP-SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a-~~~P~~-a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
..+++++.....+.+.+.+.+... ...|+. +.+++|||||+|.+....++.|+++++.++.++.||++++..
T Consensus 69 ------~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~ 142 (319)
T PRK00440 69 ------ENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYS 142 (319)
T ss_pred ------cceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCc
Confidence 113344333333444444444433 344555 568999999999999999999999999988999999999999
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQEL 644 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~el 644 (1152)
.++.+++.+||..+.|++++.+++..++..++.++|+.++++++++|+..++||+|.++++|++++.+++.||.++|.++
T Consensus 143 ~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~~~it~~~v~~~ 222 (319)
T PRK00440 143 SKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKEVTEEAVYKI 222 (319)
T ss_pred cccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999888888999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccH
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIME-TGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEM 723 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~-~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~ 723 (1152)
++...++++|++++++..++..+|+..|+.|+. .|.++..|+..|..++. ..+++.
T Consensus 223 ~~~~~~~~i~~l~~~~~~~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~~~-----------------------~~~~~~ 279 (319)
T PRK00440 223 TGTARPEEIREMIELALNGDFTEAREKLRDLMIDYGLSGEDIIKQIHREVW-----------------------SLDIPE 279 (319)
T ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----------------------hcCCCH
Confidence 999999999999999999999999999999984 89999888777753110 136889
Q ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 724 EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 724 ~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
..|.++++.+.++|+++|++.++.+.||.+++++|.
T Consensus 280 ~~l~~~~~~~~~~d~~~k~g~~~~~~le~~i~~~~~ 315 (319)
T PRK00440 280 ELKVELIDAIGEADFRITEGANERIQLEALLAKLAL 315 (319)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999984
No 40
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=100.00 E-value=7.9e-35 Score=327.30 Aligned_cols=321 Identities=26% Similarity=0.385 Sum_probs=264.6
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
..|.+||||++|++|+|++.+++.|..++..+..++ +||+||+|||||++|+++++++.+...... +.+ .+|..+.
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~-lll~Gp~GtGKT~la~~~~~~l~~~~~~~~--~~~-i~~~~~~ 78 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPH-LLVQGPPGSGKTAAVRALARELYGDPWENN--FTE-FNVADFF 78 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCce-EEEECCCCCCHHHHHHHHHHHhcCcccccc--eEE-echhhhh
Confidence 489999999999999999999999999999887765 899999999999999999999987642211 111 1111110
Q ss_pred C------CCccceEE-eCC---CCCCCHHHHHHHHHH-HhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEE
Q 036794 489 R------GKSRNIKE-VGP---VGNFDFESILDLLDN-MVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVF 557 (1152)
Q Consensus 489 ~------g~~~dviE-Ida---as~~~vdeIreLle~-a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~Vif 557 (1152)
. ...+.+.. ... ......+.+++++.. ....|+.+.+++|||||+|.++.+.++.|++++++++..+.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~ 158 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRF 158 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeE
Confidence 0 00010000 000 011234556665544 345566778899999999999999999999999998888999
Q ss_pred EEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCC
Q 036794 558 ILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRIS 637 (1152)
Q Consensus 558 ILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT 637 (1152)
|++++.+.++.++|.+||..+.|.+++.+++..+|..++.++|+.+++++++.|+.+++||+|.+++.|++++...+.||
T Consensus 159 Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~~~~~It 238 (337)
T PRK12402 159 IIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAALAAGEIT 238 (337)
T ss_pred EEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC
Confidence 99998888888899999999999999999999999999999999999999999999999999999999999886667899
Q ss_pred HHHHHHHHhc-cchhhHHHHHHHHHcCCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHh
Q 036794 638 VPLVQELVGL-ISDEKLVDLLDLALSADTVNTVKNLRVIM-ETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRR 715 (1152)
Q Consensus 638 ~EdV~elVg~-v~ee~ifdLldAils~d~~~ALk~L~~LL-~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r 715 (1152)
.++|.+++.. ..++++|++++++..++..+|+..+.+|+ .+|.++..|+..|.... .
T Consensus 239 ~~~v~~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~--------------------~- 297 (337)
T PRK12402 239 MEAAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEELLRVA--------------------R- 297 (337)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH--------------------H-
Confidence 9999999997 45889999999999999999999999997 79999998888875410 0
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHc
Q 036794 716 QPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757 (1152)
Q Consensus 716 ~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkL 757 (1152)
.+++...|.+++..|.++|+.+|++.++++.||.++.++
T Consensus 298 ---~~~~~~~l~~~~~~l~~~d~~lk~g~~~~~~le~~i~~~ 336 (337)
T PRK12402 298 ---SRYRGDNLARLHRLAADADARLTDGANDRIQLEALLAEL 336 (337)
T ss_pred ---HHCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 128889999999999999999999999999999999886
No 41
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=1.2e-32 Score=318.60 Aligned_cols=335 Identities=21% Similarity=0.323 Sum_probs=264.0
Q ss_pred CcCcccCcHHHHHHHHHHHHhCC---------CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC
Q 036794 419 TFRDLVGQNLVAQALSNAVMRRK---------VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR 489 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~gr---------i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~ 489 (1152)
.|++|+||+.+++.|++++..++ .+|+|||+||+|+|||++|++||+.++|.... ..|||.|..|..+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD-EPGCGECRACRTVLA 81 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-CCCCCCCHHHHHHhc
Confidence 48999999999999999999987 89999999999999999999999999998654 579999999999999
Q ss_pred CCccceEEeCCCC-CCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcch
Q 036794 490 GKSRNIKEVGPVG-NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALP 568 (1152)
Q Consensus 490 g~~~dviEIdaas-~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~ 568 (1152)
+.++|+..+.+.+ ..++++++++++.+...|..++++||||||+|.|+..++|+|+++||+|+.+++||++|++++.++
T Consensus 82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~ll 161 (394)
T PRK07940 82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVL 161 (394)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHCh
Confidence 9999999987653 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH---------H----HHhCCC
Q 036794 569 HIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ---------L----SLLGQR 635 (1152)
Q Consensus 569 ~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEk---------L----sLlg~~ 635 (1152)
++|+|||+.+.|++|+.+++..+|.. ..+ ++++++..++..++|++..++..++. + ..+...
T Consensus 162 pTIrSRc~~i~f~~~~~~~i~~~L~~---~~~--~~~~~a~~la~~s~G~~~~A~~l~~~~~~~~~r~~~~~~l~~l~~~ 236 (394)
T PRK07940 162 PTIRSRCRHVALRTPSVEAVAEVLVR---RDG--VDPETARRAARASQGHIGRARRLATDEEARARRAEVLNLALRLARV 236 (394)
T ss_pred HHHHhhCeEEECCCCCHHHHHHHHHH---hcC--CCHHHHHHHHHHcCCCHHHHHHHhcChHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999988863 223 68899999999999999988766432 1 000110
Q ss_pred ---C---------CHHHHHHHHhccchhhHHHHHHHHHcCC-----------HHHHHHHHHHHHHh------CCChHHHH
Q 036794 636 ---I---------SVPLVQELVGLISDEKLVDLLDLALSAD-----------TVNTVKNLRVIMET------GVEPLALM 686 (1152)
Q Consensus 636 ---I---------T~EdV~elVg~v~ee~ifdLldAils~d-----------~~~ALk~L~~LL~~------G~dPl~IL 686 (1152)
+ ....+.+.++...+....++.+.+..++ ...+++.+..+... ......++
T Consensus 237 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 316 (394)
T PRK07940 237 SDAVAAAEELVKAAEAEAKALTAERDEAETEELRTALGAGGTGKGPAKALRGAAGALKDLEKRQKRRATRASRDALDRAL 316 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHhccccccccccccchhHHHHHHHHHHHHhhhchhhhhhhHHHHH
Confidence 0 0122344555555666666666643321 22333434332221 13355688
Q ss_pred HHHHHHHHHHHhchhhhhcchhHHHHHH--hCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 687 SQLATVITDILAGSYDFTKDRHRRKFFR--RQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 687 s~La~qiRdLL~ak~~~~~g~~~~~~~~--r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
..|..++||++..+..........++.. ...+.+++...|.++++.+.++...++...++++.||.+++++.+
T Consensus 317 ~~l~~~~rDll~~~~g~~~~~~n~d~~~~l~~~a~~~~~~~l~~~~~~~~~a~~~l~~n~n~~L~lE~lll~l~~ 391 (394)
T PRK07940 317 VDLAGLYRDVLVVQLGAEVGLINPDMADRLAELAARSTPEGLLRRIDAVLACRERLAGNVKPLLAVEAMVAALRQ 391 (394)
T ss_pred HHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8899999999987653222111111110 113347899999999999999999999999999999999999863
No 42
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=2e-32 Score=308.14 Aligned_cols=304 Identities=15% Similarity=0.254 Sum_probs=258.8
Q ss_pred CcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEe
Q 036794 419 TFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV 498 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEI 498 (1152)
+|++++||+.+++.|.+++..++++|+|||+||+|+|||++|+.+|+.+.|.... +.++|+..+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~----------------~~h~D~~~~ 65 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQ----------------REYVDIIEF 65 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCC----------------CCCCCeEEe
Confidence 5999999999999999999999999999999999999999999999999986421 345566666
Q ss_pred CC--CCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccce
Q 036794 499 GP--VGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576 (1152)
Q Consensus 499 da--as~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~q 576 (1152)
.+ ....++++++++++.+...|+.++++|||||++|.|+.+++|+|+++||+||.+++||++|+++++++++|+|||+
T Consensus 66 ~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 66 KPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred ccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence 54 2346789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHH
Q 036794 577 KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDL 656 (1152)
Q Consensus 577 vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdL 656 (1152)
.+.|.+++.+++..||...+. .+++++++.++.+++|+...+...+..-. .. ...+.+|++
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~~~~----------~~-----~~~~~~~~~ 206 (313)
T PRK05564 146 IYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIEDDS----------LK-----NIRNMSLEI 206 (313)
T ss_pred eeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhcccH----------HH-----HHHHHHHHH
Confidence 999999999999999976543 57888899999999998888765543211 11 124578999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcch--h--HHHHHHhCCCCcccHHHHHHHHHH
Q 036794 657 LDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR--H--RRKFFRRQPLSKEEMEKLRQALKT 732 (1152)
Q Consensus 657 ldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~--~--~~~~~~r~~ls~~s~~kL~qaL~~ 732 (1152)
++++..++...+++.+..+...+.++..++..|..++||++..+....... . ....+ .....+++.+.|.++++.
T Consensus 207 ~~~l~~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rdll~~k~~~~~~~~~~~~~~~~i-~~~a~~~s~~~L~~~~~~ 285 (313)
T PRK05564 207 LKDIKKSNINILLKYENFLIKYKENWEEILTCILSYIRDSLLYKETGNEELIINIDKIEDI-KHISEKFSYKKLNKMIEI 285 (313)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhccCchhhhcChhHHHHH-HHHHhhCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998775322211 1 11111 223458999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 733 LSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 733 L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
+.+++..+|+..++++.||.+++++.
T Consensus 286 l~~~~~~l~~n~n~~l~le~lll~~~ 311 (313)
T PRK05564 286 INDTRDNLSSNVNPTLVFDSMLIKMQ 311 (313)
T ss_pred HHHHHHHHHHcCCccHHHHHHHHhhh
Confidence 99999999999999999999999985
No 43
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=100.00 E-value=1e-32 Score=291.01 Aligned_cols=310 Identities=19% Similarity=0.289 Sum_probs=266.7
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
...+|.+||||..+.||||+++.+..|.-..+.|..|+ ++|.|||||||||.+.++|+++......
T Consensus 13 ~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~-liisGpPG~GKTTsi~~LAr~LLG~~~k------------- 78 (333)
T KOG0991|consen 13 YQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPN-LIISGPPGTGKTTSILCLARELLGDSYK------------- 78 (333)
T ss_pred ccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCc-eEeeCCCCCchhhHHHHHHHHHhChhhh-------------
Confidence 35569999999999999999999999999999999997 7899999999999999999998765322
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhh---CCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVT---SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~---~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~ 563 (1152)
..+.|+++....+++-++.-+..+.. .-.+++.++|||||+|.|+..+|.+|.+++|-+...++|+++||.
T Consensus 79 ------e~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 79 ------EAVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred ------hHhhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcc
Confidence 23778888888899888877665432 223488999999999999999999999999999999999999999
Q ss_pred CCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHH
Q 036794 564 LDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQE 643 (1152)
Q Consensus 564 ~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~e 643 (1152)
.+++.++|.|||..++|.++++.++..+|..+++.+++.++++.++.+...++||||.++|.|+.....-+.|+.+.|-.
T Consensus 153 s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn~enVfK 232 (333)
T KOG0991|consen 153 SEKIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVNQENVFK 232 (333)
T ss_pred hhhhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999877677899999999
Q ss_pred HHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccH
Q 036794 644 LVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEM 723 (1152)
Q Consensus 644 lVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~ 723 (1152)
+++.....-+.+++.+++.++...|+++|.+|...|++|..|+..+++....+-. .+..+-
T Consensus 233 v~d~PhP~~v~~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~~~------~E~~rl------------- 293 (333)
T KOG0991|consen 233 VCDEPHPLLVKKMLQACLKRNIDEALKILAELWKLGYSPEDIITTLFRVVKNMDV------AESLRL------------- 293 (333)
T ss_pred ccCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccH------HHHHHH-------------
Confidence 9999999999999999999999999999999999999999999999887765411 011111
Q ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 724 EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 724 ~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+.|+.+.-+...+-.+.+..+-|.-++.+||.
T Consensus 294 ----E~ikeig~thmrI~eGv~s~LQl~glla~l~~ 325 (333)
T KOG0991|consen 294 ----EFIKEIGLTHMRILEGVNSLLQLSGLLAKLCK 325 (333)
T ss_pred ----HHHHHHhhHHhHHHhhHhHHHHHHHHHHHHHH
Confidence 22333333444444466777788888888884
No 44
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=2.8e-31 Score=301.30 Aligned_cols=318 Identities=21% Similarity=0.321 Sum_probs=254.4
Q ss_pred CcCcccC-cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEE
Q 036794 419 TFRDLVG-QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKE 497 (1152)
Q Consensus 419 sFddLVG-Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviE 497 (1152)
.|+.|+| |+.+++.|.+.+..++++|+|||+||+|+||+++|++||+.+.|.......||+.|..|..+..+.++|+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence 4788999 999999999999999999999999999999999999999999998766778999999999999999999999
Q ss_pred eCCCCC-CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccce
Q 036794 498 VGPVGN-FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576 (1152)
Q Consensus 498 Idaas~-~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~q 576 (1152)
+.+.+. .++++++++++.+...|+.+.++||||||+|.|+.+++|+||++||+||.+++||++|+++.+++++|+|||+
T Consensus 83 i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~ 162 (329)
T PRK08058 83 VAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQ 162 (329)
T ss_pred eccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhce
Confidence 876543 7789999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHH
Q 036794 577 KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDL 656 (1152)
Q Consensus 577 vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdL 656 (1152)
.+.|.+++.+++..+|. ++| +++++..+++... |++..+...++.-.+. . ..+.++.+
T Consensus 163 ~i~~~~~~~~~~~~~L~----~~g--i~~~~~~~l~~~~-g~~~~A~~l~~~~~~~-------~--------~~~~~~~~ 220 (329)
T PRK08058 163 VVEFRPLPPESLIQRLQ----EEG--ISESLATLLAGLT-NSVEEALALSEDDWFA-------Q--------ARALVIKL 220 (329)
T ss_pred eeeCCCCCHHHHHHHHH----HcC--CChHHHHHHHHHc-CCHHHHHHHhcCchHH-------H--------HHHHHHHH
Confidence 99999999999988775 345 6677777777664 7898887776542110 0 12334445
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHHHHhchhhhhcchh---HHHHHHhCCCCcccHHHHHHHH
Q 036794 657 LDLALSADTVNTVKNLRVIMETGV---EPLALMSQLATVITDILAGSYDFTKDRH---RRKFFRRQPLSKEEMEKLRQAL 730 (1152)
Q Consensus 657 ldAils~d~~~ALk~L~~LL~~G~---dPl~ILs~La~qiRdLL~ak~~~~~g~~---~~~~~~r~~ls~~s~~kL~qaL 730 (1152)
++.+..++....+.....+..... ....++..|...+||++..+........ ....+. .....++...|..++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~d~~~~l~-~~a~~~s~~~l~~~~ 299 (329)
T PRK08058 221 YEALHEKDLQSFVFVQEKWMPLFKEKDQQQLGLDLLLLIYRDLLYLQLGEEDRLVFREQKEMLQ-QLALSYSQQQIVAAL 299 (329)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHH-HHHHhCCHHHHHHHH
Confidence 555555555444433333332222 2335677888999999876542211111 111111 123478999999999
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 731 KTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 731 ~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+.+.++...++...++++.||.+++++.+
T Consensus 300 ~~~~~~~~~l~~n~n~~L~le~lll~~~~ 328 (329)
T PRK08058 300 ELILEAKRRLNSNVNFQLVMEQLVLRLQE 328 (329)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccc
Confidence 99999999999999999999999999863
No 45
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.98 E-value=1.6e-30 Score=295.49 Aligned_cols=306 Identities=17% Similarity=0.212 Sum_probs=245.8
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCC---
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVG--- 502 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas--- 502 (1152)
++...+.|.+++..++.+|+|||+||+|+||+++|.+||+.+.|.......|||.|..|..+..|.++|+..+.+..
T Consensus 7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (334)
T PRK07993 7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKS 86 (334)
T ss_pred ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc
Confidence 35567889999999999999999999999999999999999999876666799999999999999999999997653
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecC
Q 036794 503 NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPK 582 (1152)
Q Consensus 503 ~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~ 582 (1152)
.+++++||++.+.+...|..+.++|+|||++|.|+.++.|+|||+|||||.+++||++|++++.+++||+|||+.+.|++
T Consensus 87 ~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~ 166 (334)
T PRK07993 87 SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAP 166 (334)
T ss_pred cCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCC
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHHHH-HHH
Q 036794 583 MKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLD-LAL 661 (1152)
Q Consensus 583 p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdLld-Ail 661 (1152)
++.+++..||... ..++++.+..++..++|++..++..++.-.. +. ...+++.+. .+.
T Consensus 167 ~~~~~~~~~L~~~-----~~~~~~~a~~~~~la~G~~~~Al~l~~~~~~-------~~---------r~~~~~~l~~~~~ 225 (334)
T PRK07993 167 PPEQYALTWLSRE-----VTMSQDALLAALRLSAGAPGAALALLQPERW-------QQ---------REALCQALAYALP 225 (334)
T ss_pred CCHHHHHHHHHHc-----cCCCHHHHHHHHHHcCCCHHHHHHHhcCchH-------HH---------HHHHHHHHHHHhc
Confidence 9999999998632 2477887888899999999999877753111 00 011111111 111
Q ss_pred cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhH---HHHHHhCCCCcccHHHHHHHHHHHHHHHH
Q 036794 662 SADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR---RKFFRRQPLSKEEMEKLRQALKTLSEAEK 738 (1152)
Q Consensus 662 s~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~---~~~~~r~~ls~~s~~kL~qaL~~L~eaD~ 738 (1152)
.++....+.. + ...+...++..+...++|++..+... ..... .++.. ....+++...|..+++.+.++..
T Consensus 226 ~~~~~~~~~~---~--~~~~~~~~L~~l~~~~rD~l~~~~~~-~~~~n~d~~~~i~-~~a~~~~~~~l~~~~~~l~~~~~ 298 (334)
T PRK07993 226 SGDWLSLLPA---L--NHEQAPARLHWLATLLMDALKRQHGA-AYVTNQDQPPLVA-QLANHLSPARLQAILGDVCHCRE 298 (334)
T ss_pred CCCHHHHHHH---H--cccCHHHHHHHHHHHHHHHHHHhcCC-cceeCHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHH
Confidence 2233222222 2 24566778899999999999876532 11111 11111 22346889999999999999999
Q ss_pred Hhcc--CCCHHHHHHHHHHHcCC
Q 036794 739 QLRM--SNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 739 qLK~--s~dprl~LE~lLLkLa~ 759 (1152)
.+.. ..|+++.||.+++++..
T Consensus 299 ~l~~~~N~N~~L~le~lll~~~~ 321 (334)
T PRK07993 299 QLLSVTGVNRELLLTDLLLRIEH 321 (334)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHH
Confidence 9996 77999999999999963
No 46
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.97 E-value=1.9e-29 Score=282.85 Aligned_cols=295 Identities=16% Similarity=0.227 Sum_probs=239.0
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
...+|.+||||++|++++||+.++..|..++..++.++.|||+||+|+|||++|+++++++++.
T Consensus 7 ~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~---------------- 70 (316)
T PHA02544 7 NEFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAE---------------- 70 (316)
T ss_pred CCCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCcc----------------
Confidence 3568999999999999999999999999999999999999999999999999999999987543
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHH-HhhCCCCCCceEEEEeCCCCC-CHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDN-MVTSRPPSQYRIFVFDDCDTL-SPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~-a~~~P~~a~~kVVIIDEID~L-s~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
+.++++.. ...+.+++.+.. ....+..+.++||||||+|.+ ..++++.|..++++++.++.||++||.+
T Consensus 71 --------~~~i~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 71 --------VLFVNGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred --------ceEeccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 22333322 124445553332 333455567899999999999 6677888988999999999999999999
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHH-------HHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCC
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTL-------QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRIS 637 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL-------~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT 637 (1152)
++++++|++||..+.|+.|+.+++..++ ..++..+|+.++++++..++....||+|.+++.|+.++. ++.|+
T Consensus 142 ~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~-~~~i~ 220 (316)
T PHA02544 142 NGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS-TGKID 220 (316)
T ss_pred hhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHc-cCCCC
Confidence 9999999999999999999988876554 445667899999999999999999999999999998764 46799
Q ss_pred HHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCC
Q 036794 638 VPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQP 717 (1152)
Q Consensus 638 ~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ 717 (1152)
.+++..+. ...++++++++...|..++.. +...+ +.++..++..+...+..
T Consensus 221 ~~~l~~~~----~~~~~~l~~~l~~~d~~~~~~-~~~~~--~~~~~~~l~~~~~~~~~---------------------- 271 (316)
T PHA02544 221 AGILSEVT----NSDIDDVVEALKAKDFKAVRA-LAPNY--ANDYASFVGKLYDELYP---------------------- 271 (316)
T ss_pred HHHHHHhh----HHHHHHHHHHHHcCCHHHHHH-HHHHh--ccCHHHHHHHHHHHHHH----------------------
Confidence 88887765 577889999998888777665 32222 66777776666554432
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 718 LSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 718 ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
......+.++++.+.+++..+..+.++.+.||.++++++
T Consensus 272 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~le~~l~~~~ 310 (316)
T PHA02544 272 --QVTPPSIIRLIEIIGENNQYHGFAADQEIHLLYLLTQLM 310 (316)
T ss_pred --hCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 124567788899999999999999999999999999987
No 47
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=4.9e-30 Score=289.90 Aligned_cols=307 Identities=17% Similarity=0.224 Sum_probs=240.6
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCC--CC
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPV--GN 503 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaa--s~ 503 (1152)
+....+.|.+++..++.+|+|||+||+|+||+++|++||+.+.|.......|||.|..|..+..|.++|+..+.+. ..
T Consensus 7 ~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (325)
T PRK06871 7 LQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKD 86 (325)
T ss_pred hHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCC
Confidence 4556788999999999999999999999999999999999999987666689999999999999999999999763 34
Q ss_pred CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCC
Q 036794 504 FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKM 583 (1152)
Q Consensus 504 ~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p 583 (1152)
.++++||++.+.+...|..+.++|+|||++|.|+..++|+|||+|||||.+++||++|++++.+++||+|||+.+.|.++
T Consensus 87 I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~ 166 (325)
T PRK06871 87 IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPP 166 (325)
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHHHHH-HHc
Q 036794 584 KDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDL-ALS 662 (1152)
Q Consensus 584 ~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdLldA-ils 662 (1152)
+.+++.+||.... ..+++.+..++..++|++..+...++.-.+ +.-. .+++.+.. ...
T Consensus 167 ~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~~~~~-------~~r~---------~~~~~l~~~~~~ 225 (325)
T PRK06871 167 EEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLEQGLL-------EQRK---------TFLRQFWLFYRR 225 (325)
T ss_pred CHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhhCChH-------HHHH---------HHHHHHHHHhcc
Confidence 9999999998653 234445666778889999887666543111 0111 11111111 112
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHH--hCCCCcccHHHHHHHHHHHHHHHHHh
Q 036794 663 ADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFR--RQPLSKEEMEKLRQALKTLSEAEKQL 740 (1152)
Q Consensus 663 ~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~--r~~ls~~s~~kL~qaL~~L~eaD~qL 740 (1152)
++....+ ..+ . ..+...++..|...++|++..+..........+... ...+.+++.+.|..+++.+.++...+
T Consensus 226 ~~~~~~~---~~~-~-k~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~D~~~~i~~~a~~~s~~~L~~~i~~i~~~r~~L 300 (325)
T PRK06871 226 RSPLELL---PLF-D-KELVLQQLDWLLAFLSDALKAKLDIASGWICQDLQRGILQFSQQQSAQGLLKAHQIIQKVRSDL 300 (325)
T ss_pred CCHHHHH---HHH-h-hccHHHHHHHHHHHHHHHHHHHcCCCcccccHhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 2222222 222 1 245667788889999999886653322111111111 12235789999999999999999999
Q ss_pred cc--CCCHHHHHHHHHHHcC
Q 036794 741 RM--SNDKLTWLTAALLQLA 758 (1152)
Q Consensus 741 K~--s~dprl~LE~lLLkLa 758 (1152)
+. +.|+.+.|+..|+...
T Consensus 301 ~~~~~iN~~L~l~~~l~~~~ 320 (325)
T PRK06871 301 LQINAVNQELILLDGLTRLV 320 (325)
T ss_pred HcccccCHHHHHHHHHHHHH
Confidence 77 6699999999998775
No 48
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=1e-29 Score=288.26 Aligned_cols=303 Identities=19% Similarity=0.222 Sum_probs=238.3
Q ss_pred HHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCC---CCCCHHHH
Q 036794 433 LSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPV---GNFDFESI 509 (1152)
Q Consensus 433 Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaa---s~~~vdeI 509 (1152)
+.+.+..++.+|+|||+||+|+|||++|++||+.+.|.......|||.|..|..+..+.++|++.+.+. ...++++|
T Consensus 12 ~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~i 91 (328)
T PRK05707 12 WQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQV 91 (328)
T ss_pred HHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHH
Confidence 345566799999999999999999999999999999987666789999999999999999999999764 34789999
Q ss_pred HHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHH
Q 036794 510 LDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589 (1152)
Q Consensus 510 reLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~ 589 (1152)
+++.+.+...|..+.++|||||++|.|+.+++|+||++|||||.+++||++|++++.+++||+|||+.+.|.+++.+++.
T Consensus 92 R~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~ 171 (328)
T PRK05707 92 RELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESL 171 (328)
T ss_pred HHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHH
Q 036794 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTV 669 (1152)
Q Consensus 590 eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdLldAils~d~~~AL 669 (1152)
.||.... -..+++.+..++..++|++..++..++.-.+ + ....+++.+..+..+.. .++
T Consensus 172 ~~L~~~~----~~~~~~~~~~~l~la~Gsp~~A~~l~~~~~~-------~---------~r~~~~~~l~~~~~~~~-~~~ 230 (328)
T PRK05707 172 QWLQQAL----PESDERERIELLTLAGGSPLRALQLHEQGVR-------E---------QRARVLDGVKKLLKQQQ-SAS 230 (328)
T ss_pred HHHHHhc----ccCChHHHHHHHHHcCCCHHHHHHHHCcchH-------H---------HHHHHHHHHHHHhcCcc-cHH
Confidence 9997542 1346667777888999999998777543110 0 01122222333232221 233
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc-hhHH---HHHHhCCCCcccHHHHHHHHHHHHHHHHHhc--cC
Q 036794 670 KNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD-RHRR---KFFRRQPLSKEEMEKLRQALKTLSEAEKQLR--MS 743 (1152)
Q Consensus 670 k~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g-~~~~---~~~~r~~ls~~s~~kL~qaL~~L~eaD~qLK--~s 743 (1152)
.....+ .+.+...++..|...++|++..+...... .... ... ...+.+++...|..+++.+.++...++ ..
T Consensus 231 ~~~~~~--~k~~~~~~l~~l~~~~~D~l~~~~~~~~~~~~n~d~~~~l-~~~a~~~~~~~L~~~~~~l~~~~~~l~~~~N 307 (328)
T PRK05707 231 QLAESW--LKVPLLLLFDWFCDWAHDILRYQLTQDEEGLGLADMRKVL-QYLAQKSPQAKVLALQDWLLEQRQKVLGKAN 307 (328)
T ss_pred HHHHHH--ccCCHHHHHHHHHHHHHHHHHHHcCCCcccccCHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHhhccCC
Confidence 333332 24566778889999999998866532211 1111 111 112347889999999999999999997 47
Q ss_pred CCHHHHHHHHHHHcCC
Q 036794 744 NDKLTWLTAALLQLAP 759 (1152)
Q Consensus 744 ~dprl~LE~lLLkLa~ 759 (1152)
.++++.||.+++++..
T Consensus 308 vN~~L~le~lll~~~~ 323 (328)
T PRK05707 308 LNRQLLLEALLVQWAG 323 (328)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7999999999999863
No 49
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=2.5e-29 Score=283.68 Aligned_cols=285 Identities=22% Similarity=0.307 Sum_probs=225.7
Q ss_pred CcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEe
Q 036794 419 TFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV 498 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEI 498 (1152)
.|++|+||+.+++.|..++..++++|+|||+||+|+||+++|.++|+.+.|.. +|+.|..|. +..+.++|+..+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~-----~c~~c~~~~-~~~~~hPDl~~i 75 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG-----SPSKNIRRR-LEEGNHPDLLWV 75 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-----CCCCcHhcc-cccCCCCCEEEE
Confidence 48999999999999999999999999999999999999999999999999984 799999988 888999999987
Q ss_pred CCC-----------------------CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCE
Q 036794 499 GPV-----------------------GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRV 555 (1152)
Q Consensus 499 daa-----------------------s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~V 555 (1152)
.+. ....+++++++.+.+...|+.++++|||||++|.|+..++|+||++||+|| ++
T Consensus 76 ~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~ 154 (314)
T PRK07399 76 EPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NG 154 (314)
T ss_pred eccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CC
Confidence 653 135578999999999999999999999999999999999999999999998 88
Q ss_pred EEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 036794 556 VFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR 635 (1152)
Q Consensus 556 ifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~ 635 (1152)
+||++|++++++++||+|||+.+.|++++.+++.++|......++.. ..+..++..++|+++.+++.++....
T Consensus 155 ~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~al~~l~~~~~---- 227 (314)
T PRK07399 155 TLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAAIANIEQLQS---- 227 (314)
T ss_pred eEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHHHHHHHHHHH----
Confidence 99999999999999999999999999999999999999875443322 22567788899999999998865321
Q ss_pred CCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHH---HHHHHHHHHHHHHhchhhhhcchhHHHH
Q 036794 636 ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLA---LMSQLATVITDILAGSYDFTKDRHRRKF 712 (1152)
Q Consensus 636 IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~---ILs~La~qiRdLL~ak~~~~~g~~~~~~ 712 (1152)
+..+.+.. +..+ ..+...++.+- +.+..+.+... ++..+..+|++
T Consensus 228 ~~~~~~~~-------------~~~~-~~~~~~~~~~a-~~~~~~~~~e~Q~~~l~~~~~~~~~----------------- 275 (314)
T PRK07399 228 IPPELLQK-------------LEQP-PKSPLEALELA-KDISEELDIEQQLWLIDYLQQHYWQ----------------- 275 (314)
T ss_pred HHHHHHHH-------------HHhc-ccCHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHHHH-----------------
Confidence 11111221 1111 13444444332 22332333322 23333332221
Q ss_pred HHhCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 713 FRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 713 ~~r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
. +....+++.|.++.+.+....+|++.+|.++++|++
T Consensus 276 --~--------~~~~~~~~~l~~a~~~l~~nvn~~lv~e~~~l~l~~ 312 (314)
T PRK07399 276 --K--------TKNRQLLKQLEKLRKQLLSYVQPRLAWEVTLLELSQ 312 (314)
T ss_pred --h--------hcchHHHHHHHHHHHHHHHcCCcchhHHHHHHHHhc
Confidence 0 124667889999999999999999999999999985
No 50
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=6.6e-28 Score=277.09 Aligned_cols=324 Identities=18% Similarity=0.211 Sum_probs=240.4
Q ss_pred hCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCC----------CCCCCCcc
Q 036794 415 YMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPK----------PCGFCNSC 484 (1152)
Q Consensus 415 yRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~e----------pcg~c~~c 484 (1152)
.+|++|++|+||+.+++.|.+++..++++|+|||+||+|+||+++|.+||+.+.|....... +|+.|..|
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 68999999999999999999999999999999999999999999999999999997643323 38899999
Q ss_pred ccccCCCccceEEeCCC---------CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCE
Q 036794 485 ISHDRGKSRNIKEVGPV---------GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRV 555 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaa---------s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~V 555 (1152)
..+..+.++|+..+.+. ..+.+++|+++.+.+...+..+.++||||||+|.|+..++|+|+++||+|+.++
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 99999999999998641 236789999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 036794 556 VFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR 635 (1152)
Q Consensus 556 ifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~ 635 (1152)
+||++|++++.+.++|++||+.+.|.+++.+++..+|... +...+++++..++..++|+++.+++.++.-.+
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~----~~~~~~~~~~~l~~~s~Gsp~~Al~ll~~~~~---- 244 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA----GPDLPDDPRAALAALAEGSVGRALRLAGGDGL---- 244 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh----cccCCHHHHHHHHHHcCCCHHHHHHHhcccch----
Confidence 9999999999999999999999999999999999998754 33456666788899999999999888764211
Q ss_pred CCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHhchhhh-hcchh-H--
Q 036794 636 ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVE--PLALMSQLATVITDILAGSYDF-TKDRH-R-- 709 (1152)
Q Consensus 636 IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~d--Pl~ILs~La~qiRdLL~ak~~~-~~g~~-~-- 709 (1152)
+... .+++++......+....+.+...+...+.+ ...++..|..++.+++...... ..... .
T Consensus 245 ---~~~~---------~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~l~d~~~~~~~~~~~~~~~~~~ 312 (365)
T PRK07471 245 ---ALYR---------RLTALLDTLPRLDRRALHALADAAAGRDRAARFALFLDLLDRWLARLARAGARGAPPPEAVPGE 312 (365)
T ss_pred ---HHHH---------HHHHHHhccccCCHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHhhccCCCCccccchh
Confidence 1111 112222222223333333333333222211 3345666667777776643220 00000 0
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHcCC
Q 036794 710 RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLR-MSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 710 ~~~~~r~~ls~~s~~kL~qaL~~L~eaD~qLK-~s~dprl~LE~lLLkLa~ 759 (1152)
...+.. .........+.+..+.+.+.-.... ...|++++++.+|+.+..
T Consensus 313 ~~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~Ln~~l~~~~~l~~~~~ 362 (365)
T PRK07471 313 AALLAR-LAPDARLRRWAEVWEKIGRRARRTEAVNLDRKALVLDVFGLLAE 362 (365)
T ss_pred hHHHHh-hccchhHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHH
Confidence 011111 1122345566666666655555555 377999999999999863
No 51
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=6.1e-28 Score=274.63 Aligned_cols=299 Identities=19% Similarity=0.243 Sum_probs=229.2
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC-CCCCCCCCCccccccCCCccceEEeCCC-----
Q 036794 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE-QPKPCGFCNSCISHDRGKSRNIKEVGPV----- 501 (1152)
Q Consensus 428 ~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e-~~epcg~c~~c~~i~~g~~~dviEIdaa----- 501 (1152)
...+.|... .++++|+|||+||+|+||+++|+.||+.++|.... ...|||.|..|..+..+.++|+..+.+.
T Consensus 8 ~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~ 85 (342)
T PRK06964 8 DDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAE 85 (342)
T ss_pred HHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccccc
Confidence 344555553 67999999999999999999999999999998743 3579999999999999999999988543
Q ss_pred ------------------------CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEE
Q 036794 502 ------------------------GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVF 557 (1152)
Q Consensus 502 ------------------------s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~Vif 557 (1152)
..+++++|+++.+.+...|..++++|+|||++|.|+.+++|+|||+|||||.+++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~f 165 (342)
T PRK06964 86 APGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVF 165 (342)
T ss_pred ccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEE
Confidence 24678999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCC
Q 036794 558 ILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRIS 637 (1152)
Q Consensus 558 ILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT 637 (1152)
|++|++++.+++||+|||+.|.|++++.+++..||... + +++. +.++..++|++..++..++.- .
T Consensus 166 iL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~--~~~~--~~~l~~~~Gsp~~Al~~~~~~-----~-- 230 (342)
T PRK06964 166 LLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----G--VADA--DALLAEAGGAPLAALALASDE-----N-- 230 (342)
T ss_pred EEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----C--CChH--HHHHHHcCCCHHHHHHHHCCC-----h--
Confidence 99999999999999999999999999999999998653 3 3332 234666789998887666321 0
Q ss_pred HHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchh--HHHHHHh
Q 036794 638 VPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH--RRKFFRR 715 (1152)
Q Consensus 638 ~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~--~~~~~~r 715 (1152)
.+....+ ++.+........+.....+. ..+...++..|...++|++..+.....-.. ....+.
T Consensus 231 ~~~~~~~------------~~~l~~~~~~~~~~~~~~~~--k~~~~~~l~~l~~~lrD~l~~~~~~~~~~~~d~~~~l~- 295 (342)
T PRK06964 231 RPLRDWT------------LGQLAAGAACDAFACAETLQ--KLPVPAVLGWLQRWLYDLLAQRLAGAPRYFPAQRAALA- 295 (342)
T ss_pred HHHHHHH------------HHHHhccCchhHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHHHcCCCceecHhHHHHHH-
Confidence 1111111 11111112222233333332 245667888899999999886653211111 111221
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 716 QPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 716 ~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
....+++...|.++++.+.++...+....++++.||.+++++.
T Consensus 296 ~~a~~~~~~~L~~~~~~i~~~~~~~~~nvn~~L~le~lll~~~ 338 (342)
T PRK06964 296 RCAAAVDANALARFAKAVTRQRAVENHPLAARLVFEELFLGYR 338 (342)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhHCCCCHHHHHHHHHHHHH
Confidence 1234789999999999999999988989999999999999885
No 52
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.7e-28 Score=276.72 Aligned_cols=255 Identities=22% Similarity=0.352 Sum_probs=215.9
Q ss_pred cchhhhhCCCCcCcccCcHHHH---HHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVA---QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~---q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.||..+.||++|+|+|||++++ ..|..++..+.+++ ++|||||||||||+|++||+..++.
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~S-mIl~GPPG~GKTTlA~liA~~~~~~--------------- 75 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHS-MILWGPPGTGKTTLARLIAGTTNAA--------------- 75 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCce-eEEECCCCCCHHHHHHHHHHhhCCc---------------
Confidence 5999999999999999999988 57889999998886 7899999999999999999998876
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC-
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL- 564 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~- 564 (1152)
+..+++ ...++.+++++++.+......+++.|+||||||.++...|.+||..+|+ ..++||.+|++.
T Consensus 76 ---------f~~~sA-v~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~--G~iilIGATTENP 143 (436)
T COG2256 76 ---------FEALSA-VTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVEN--GTIILIGATTENP 143 (436)
T ss_pred ---------eEEecc-ccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcC--CeEEEEeccCCCC
Confidence 334433 3467899999999986666668889999999999999999999999998 789999998754
Q ss_pred C-cchHHHHccceEEEecCCChhHHHHHHHHHHH--HcCCC-----CCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--
Q 036794 565 D-ALPHIIISRCQKFFFPKMKDADIIYTLQWIAS--KEGIE-----IDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-- 634 (1152)
Q Consensus 565 d-kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iak--keGl~-----Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~-- 634 (1152)
. .+.++|+|||+++.|++++.+++...|.+.+. ..|+. ++++++++|+..++||.|.++|.||.+....+
T Consensus 144 sF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~ 223 (436)
T COG2256 144 SFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPD 223 (436)
T ss_pred CeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCC
Confidence 3 68899999999999999999999999998443 34555 88999999999999999999999999877743
Q ss_pred -CCCHHHHHHHHhccch------hhHHH----HHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 036794 635 -RISVPLVQELVGLISD------EKLVD----LLDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT 691 (1152)
Q Consensus 635 -~IT~EdV~elVg~v~e------e~ifd----LldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~ 691 (1152)
.++.++++++++.... +..++ +.+.+-..|++.|+.+|-+|++.|+||..|...|..
T Consensus 224 ~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~ 291 (436)
T COG2256 224 EVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVR 291 (436)
T ss_pred cccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 3568999998865322 34444 455555679999999999999999999998876655
No 53
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=7.5e-28 Score=271.62 Aligned_cols=301 Identities=20% Similarity=0.283 Sum_probs=232.4
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCC---C
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPV---G 502 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaa---s 502 (1152)
+....+.|.+++..++++|+|||+||.|+||+++|+.||+.+.|.... ..|||.|.+|..+..|.++|++.+.+. .
T Consensus 8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~-~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (319)
T PRK06090 8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQ-SEACGFCHSCELMQSGNHPDLHVIKPEKEGK 86 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCHHHHHHHcCCCCCEEEEecCcCCC
Confidence 456678899999999999999999999999999999999999998743 579999999999999999999999764 3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecC
Q 036794 503 NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPK 582 (1152)
Q Consensus 503 ~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~ 582 (1152)
.+++++|+++.+.+...|..++++|+|||++|.|+..++|+|||+|||||.+++||++|++++++++||+|||+.+.|++
T Consensus 87 ~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~ 166 (319)
T PRK06090 87 SITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTP 166 (319)
T ss_pred cCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHHHHHHHc
Q 036794 583 MKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALS 662 (1152)
Q Consensus 583 p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdLldAils 662 (1152)
|+.+++.+||.. .|+. ....++..++|++..+...++.-. .+.-. +.+..+.+.+..
T Consensus 167 ~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~~~~-------~~~~~--------~~~~~l~~~l~~ 223 (319)
T PRK06090 167 PSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMMKEGG-------LEKYH--------KLERQLVDALSG 223 (319)
T ss_pred CCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHhCCCc-------HHHHH--------HHHHHHHHHHhc
Confidence 999999998863 3443 234567788999998877654210 01111 111222222222
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHH-hCCCCcccHHHHHHHHHHHHHHHHHhc
Q 036794 663 ADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFR-RQPLSKEEMEKLRQALKTLSEAEKQLR 741 (1152)
Q Consensus 663 ~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~-r~~ls~~s~~kL~qaL~~L~eaD~qLK 741 (1152)
+. ...+.....+... ...++..|...++|++..+..... ..++. ...+.+++...|...++.+.++..++.
T Consensus 224 ~~-~~~~~~a~~~~~~---~~~~l~~L~~ll~Dll~~~~g~~~----~~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~L~ 295 (319)
T PRK06090 224 PV-SDQLKCASLIAAD---PLTHLSWLWLLLTDAQKVHFGVQN----EYYLPGSAALGPFTYSGLYVSTAKLERLKEQLQ 295 (319)
T ss_pred Cc-ccHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHhCCcc----hhhhHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 22 2333333333222 223566677788898876644211 11111 112245688899999999999999998
Q ss_pred c--CCCHHHHHHHHHHHcC
Q 036794 742 M--SNDKLTWLTAALLQLA 758 (1152)
Q Consensus 742 ~--s~dprl~LE~lLLkLa 758 (1152)
. ..++++.++.++++..
T Consensus 296 ~~~~ln~elll~~lll~~~ 314 (319)
T PRK06090 296 QFSGLNTELLIMNWLIESR 314 (319)
T ss_pred hccccCHHHHHHHHHHHHH
Confidence 6 5589999999998774
No 54
>PRK04195 replication factor C large subunit; Provisional
Probab=99.96 E-value=3.8e-27 Score=280.09 Aligned_cols=282 Identities=23% Similarity=0.321 Sum_probs=228.3
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHh---CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMR---RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~---gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|.+||||++|++|+||+.++..|..|+.. +..++++||+||||||||++|++||+++++.
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~--------------- 66 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWE--------------- 66 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC---------------
Confidence 4899999999999999999999999999875 4557789999999999999999999998643
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhh-CCCCC-CceEEEEeCCCCCCH----HHHHHHHHHHhhCCCCEEEEE
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVT-SRPPS-QYRIFVFDDCDTLSP----DSWSAISKVVDRAPRRVVFIL 559 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~-~P~~a-~~kVVIIDEID~Ls~----eaqnaLLklLEepp~~VifIL 559 (1152)
++++++......+.+..++..... .+..+ .++||||||+|.|+. ..+++|+++++. ....||+
T Consensus 67 ---------~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIl 135 (482)
T PRK04195 67 ---------VIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIIL 135 (482)
T ss_pred ---------EEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEE
Confidence 455555444445666666665432 34444 789999999999976 568899999996 3456788
Q ss_pred EcCCCCcchH-HHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCH
Q 036794 560 VSSSLDALPH-IIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISV 638 (1152)
Q Consensus 560 aTN~~dkL~~-aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~ 638 (1152)
+||++..+.. +|+++|..|.|++++..++..+|..++..+|+.+++++++.|+..++||+|.++|.|+.++...+.|+.
T Consensus 136 i~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~ 215 (482)
T PRK04195 136 TANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTL 215 (482)
T ss_pred eccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcH
Confidence 8888877666 899999999999999999999999999999999999999999999999999999999996654567999
Q ss_pred HHHHHHHhccchhhHHHHHHHHHc-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCC
Q 036794 639 PLVQELVGLISDEKLVDLLDLALS-ADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQP 717 (1152)
Q Consensus 639 EdV~elVg~v~ee~ifdLldAils-~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ 717 (1152)
+++..++....+.++|+++++++. ++...++..+. ....+|..++..|...+-..
T Consensus 216 ~~v~~~~~~d~~~~if~~l~~i~~~k~~~~a~~~~~---~~~~~~~~i~~~l~en~~~~--------------------- 271 (482)
T PRK04195 216 EDVKTLGRRDREESIFDALDAVFKARNADQALEASY---DVDEDPDDLIEWIDENIPKE--------------------- 271 (482)
T ss_pred HHHHHhhcCCCCCCHHHHHHHHHCCCCHHHHHHHHH---cccCCHHHHHHHHHhccccc---------------------
Confidence 999999887788999999999997 77877766543 34567766666555543210
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcc
Q 036794 718 LSKEEMEKLRQALKTLSEAEKQLRM 742 (1152)
Q Consensus 718 ls~~s~~kL~qaL~~L~eaD~qLK~ 742 (1152)
-.+++.+.+++..|+++|..+..
T Consensus 272 --~~~~~~~~~a~~~ls~ad~~~~~ 294 (482)
T PRK04195 272 --YDDPEDIARAYDALSRADIFLGR 294 (482)
T ss_pred --cCCHHHHHHHHHHHhHHHHHHHH
Confidence 12457788888888888887644
No 55
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.96 E-value=3.8e-27 Score=275.05 Aligned_cols=256 Identities=22% Similarity=0.366 Sum_probs=211.6
Q ss_pred chhhhhCCCCcCcccCcHHHHHH---HHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQA---LSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~---Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
||.+||||++|+++|||++++.. |..++..+..+ .+||+||||||||++|++|++.+++.
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~-~ilL~GppGtGKTtLA~~ia~~~~~~---------------- 63 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLS-SMILWGPPGTGKTTLARIIAGATDAP---------------- 63 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCc-eEEEECCCCCCHHHHHHHHHHHhCCC----------------
Confidence 68999999999999999999776 99999887765 57899999999999999999987643
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCC-C-
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSS-L- 564 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~-~- 564 (1152)
+..+++. ..+.+.++++++.+......+.+.||||||+|.++...++.|+.++++ ..++||++|+. +
T Consensus 64 --------~~~l~a~-~~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~--~~iilI~att~n~~ 132 (413)
T PRK13342 64 --------FEALSAV-TSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTENPS 132 (413)
T ss_pred --------EEEEecc-cccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc--CcEEEEEeCCCChh
Confidence 2333322 234667778887765444446788999999999999999999999997 56777777653 2
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHHHHHHHHc--CC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHH
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKE--GI-EIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLV 641 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakke--Gl-~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV 641 (1152)
..+.++|++||..+.|.+++.+++..+|...+... ++ .+++++++.|+++++||+|.+++.|+.++.....|+.+++
T Consensus 133 ~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~It~~~v 212 (413)
T PRK13342 133 FEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGVDSITLELL 212 (413)
T ss_pred hhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCHHHH
Confidence 36889999999999999999999999999987653 55 8999999999999999999999999998777778999999
Q ss_pred HHHHhccc------hhhHHHHHHHHHc----CCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 036794 642 QELVGLIS------DEKLVDLLDLALS----ADTVNTVKNLRVIMETGVEPLALMSQLATVI 693 (1152)
Q Consensus 642 ~elVg~v~------ee~ifdLldAils----~d~~~ALk~L~~LL~~G~dPl~ILs~La~qi 693 (1152)
.++++... .+..++++.++.. .|.+.|+.+|..|+..|++|..|+..|....
T Consensus 213 ~~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 213 EEALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99987531 1345666555554 8999999999999999999999998776643
No 56
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=2.3e-27 Score=271.29 Aligned_cols=214 Identities=23% Similarity=0.319 Sum_probs=192.7
Q ss_pred hhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCC------CCCCCCCCCCcccc
Q 036794 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL------EQPKPCGFCNSCIS 486 (1152)
Q Consensus 413 eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~------e~~epcg~c~~c~~ 486 (1152)
..+.|..|++|+||+.++..|..++..++.+|+|||+||+|+|||++|+.+|+.+.|... ....||+.|..|..
T Consensus 15 ~~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~ 94 (351)
T PRK09112 15 GVPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQ 94 (351)
T ss_pred CCCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHH
Confidence 347899999999999999999999999999999999999999999999999999999421 12258999999999
Q ss_pred ccCCCccceEEeCCC---------CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEE
Q 036794 487 HDRGKSRNIKEVGPV---------GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVF 557 (1152)
Q Consensus 487 i~~g~~~dviEIdaa---------s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~Vif 557 (1152)
+..+.++|+..+... ....+++++++.+.+...+..++++||||||+|.|+..++|+||++||+|+.+++|
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 999999999876421 23568999999999888888899999999999999999999999999999999999
Q ss_pred EEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 036794 558 ILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ 628 (1152)
Q Consensus 558 ILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEk 628 (1152)
|++|+.+..+.++|+|||+.+.|++++.+++..+|.......+ ++++++..++..++|++|.++++++.
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999998654433 77999999999999999999998865
No 57
>PRK04132 replication factor C small subunit; Provisional
Probab=99.95 E-value=1.4e-26 Score=286.42 Aligned_cols=271 Identities=23% Similarity=0.328 Sum_probs=242.2
Q ss_pred EEEEc--CCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHh-hCCCC
Q 036794 446 YVFYG--PHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV-TSRPP 522 (1152)
Q Consensus 446 yLL~G--PpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~-~~P~~ 522 (1152)
+++.| |.+.||||+|++||+.+.+... ..++++++++...+++.+++++..+. ..|..
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~-------------------~~~~lElNASd~rgid~IR~iIk~~a~~~~~~ 627 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENW-------------------RHNFLELNASDERGINVIREKVKEFARTKPIG 627 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccc-------------------cCeEEEEeCCCcccHHHHHHHHHHHHhcCCcC
Confidence 56779 9999999999999999865422 23489999988889999999998754 44443
Q ss_pred C-CceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCC
Q 036794 523 S-QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGI 601 (1152)
Q Consensus 523 a-~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl 601 (1152)
+ +++||||||+|.|+.++|++|+++||+|+.++.||++||++.+++++|+|||+.+.|++++.+++..+|.++++++|+
T Consensus 628 ~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi 707 (846)
T PRK04132 628 GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL 707 (846)
T ss_pred CCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 3 579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHH-HhCC
Q 036794 602 EIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIM-ETGV 680 (1152)
Q Consensus 602 ~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL-~~G~ 680 (1152)
.++++++..|+..++||+|.++|.|+.++...+.||.++|..+.+....+.++++++.++.++...+...+++++ ..|.
T Consensus 708 ~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~~~~It~~~V~~~~~~~~~~~I~~il~~~l~~~~~~ar~~l~ell~~~G~ 787 (846)
T PRK04132 708 ELTEEGLQAILYIAEGDMRRAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGL 787 (846)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999887777899999999999998999999999999999999999999987 7999
Q ss_pred ChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 681 EPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 681 dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
++..++..|...+.+. ..+.....+++..+.++|..+..+.++.+.|+.++.+++
T Consensus 788 ~~~~iL~~l~~~l~~~-----------------------~i~~~~k~~ll~~lae~e~rl~~G~n~~iqL~a~la~~~ 842 (846)
T PRK04132 788 SGEDVLVQMHREVFNL-----------------------PIDEPKKVELADKIGEYNFRLVEGANEMIQLEALLAQFT 842 (846)
T ss_pred CHHHHHHHHHHHHHhc-----------------------CCCHHHHHHHHHHHHHHhHHHHCCCCHHHHHHHHHHHHH
Confidence 9999999998876421 122334457788999999999999999999999999986
No 58
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.95 E-value=2.3e-26 Score=259.77 Aligned_cols=291 Identities=17% Similarity=0.181 Sum_probs=226.8
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeC--CC--
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVG--PV-- 501 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEId--aa-- 501 (1152)
++.+.+.|..++..++.+|+|||+||+|+||+++|.+||+.+.|... .+|+.|..|..+..+.++|+..+. +.
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~---~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~ 85 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGP---DPAAAQRTRQLIAAGTHPDLQLVSFIPNRT 85 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCC---CCCCcchHHHHHhcCCCCCEEEEecCCCcc
Confidence 56788999999999999999999999999999999999999999742 468889999999999999999883 32
Q ss_pred -----CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccce
Q 036794 502 -----GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576 (1152)
Q Consensus 502 -----s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~q 576 (1152)
..+.+++|+++.+.+...|..++++|||||++|.|+..++|+|||+|||||.+++||++|++++.+++||+|||+
T Consensus 86 ~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq 165 (319)
T PRK08769 86 GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQ 165 (319)
T ss_pred cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhhe
Confidence 135799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHH
Q 036794 577 KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDL 656 (1152)
Q Consensus 577 vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdL 656 (1152)
.+.|.+++.+++..||.. .| ++++.+..++..++|++..+...++.-.. +. ...+++.
T Consensus 166 ~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~~~~~~-------~~---------r~~~~~~ 223 (319)
T PRK08769 166 RLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWLREDGL-------AL---------RRAVAQD 223 (319)
T ss_pred EeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHhcCchH-------HH---------HHHHHHH
Confidence 999999999999999863 23 56666667788899999988776643110 00 0111122
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHHHHHHHHHHHHHH
Q 036794 657 LDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEA 736 (1152)
Q Consensus 657 ldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~kL~qaL~~L~ea 736 (1152)
+..+..+.. .++.....+...+. . ..+...++|++..+.. . . .|+ ......|.+....|.+.
T Consensus 224 l~~~~~~~~-~~~~~a~~~~~~~~--~---~~l~~~~~Dll~~~~~--~--~--~~~------~~~~~~L~~~~~~l~~~ 285 (319)
T PRK08769 224 LEQIASGRA-GAVDVAQRWTNDGQ--A---DQRLRHAADLALAQAS--A--G--LTD------PSRLHKLATWFDAANRT 285 (319)
T ss_pred HHHhccCcc-cHHHHHHHHccCCc--H---HHHHHHHHHHHHHhcC--C--c--ccC------hhhHHHHHHHHHHHHHH
Confidence 222222222 24444444333221 1 5777788888876541 1 1 111 11567788888888888
Q ss_pred HHHhccCCCHHHHHHHHHHHcCC
Q 036794 737 EKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 737 D~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
-..+..+.|+++.+|.+++++..
T Consensus 286 ~~~~~~~lN~~L~le~lll~~~~ 308 (319)
T PRK08769 286 RDLLRTTVRADLAVTELLLAWRE 308 (319)
T ss_pred HHhccCCCCHHHHHHHHHHHHHH
Confidence 88888899999999999999963
No 59
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.95 E-value=4.5e-26 Score=258.43 Aligned_cols=297 Identities=19% Similarity=0.285 Sum_probs=231.2
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCC-CCCCCCCCccccccCCCccceEEeCCCC----
Q 036794 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQ-PKPCGFCNSCISHDRGKSRNIKEVGPVG---- 502 (1152)
Q Consensus 428 ~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~-~epcg~c~~c~~i~~g~~~dviEIdaas---- 502 (1152)
...+.|... .++.+|+|||+||+|+|||++|+.||+.+.|..... ..||+.|..|..+..+.++|++++.+.+
T Consensus 8 ~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~ 85 (325)
T PRK08699 8 EQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPE 85 (325)
T ss_pred HHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccccc
Confidence 334445444 579999999999999999999999999999976533 4699999999999999999999998742
Q ss_pred ------CCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccce
Q 036794 503 ------NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576 (1152)
Q Consensus 503 ------~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~q 576 (1152)
.+++++||++.+.+...|..+.++|||||+++.|+..++++|+++||+++.++.||++|++++.++++|.+||+
T Consensus 86 ~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~ 165 (325)
T PRK08699 86 NGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCR 165 (325)
T ss_pred ccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhh
Confidence 36899999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHH
Q 036794 577 KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDL 656 (1152)
Q Consensus 577 vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdL 656 (1152)
.+.|++++.+++..||.. .|+.... + .+ ..++|....+. . ++..+. .. ++
T Consensus 166 ~~~~~~~~~~~~~~~L~~----~~~~~~~-~--~l-~~~~g~p~~~~---------~-----~~~~~~-----r~---~~ 215 (325)
T PRK08699 166 KMVLPAPSHEEALAYLRE----RGVAEPE-E--RL-AFHSGAPLFDE---------E-----PELRAL-----RI---KL 215 (325)
T ss_pred hhcCCCCCHHHHHHHHHh----cCCCcHH-H--HH-HHhCCChhhhc---------C-----chHHHH-----HH---HH
Confidence 999999999999999864 3443221 2 23 34556553210 0 011110 01 22
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHH---HHHHhCCCCcccHHHHHHHHHHH
Q 036794 657 LDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRR---KFFRRQPLSKEEMEKLRQALKTL 733 (1152)
Q Consensus 657 ldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~---~~~~r~~ls~~s~~kL~qaL~~L 733 (1152)
++.+...+....+..+..+...+.+...++..|...++|++..+.... ..... +.+. ....+++...|.++++.+
T Consensus 216 ~~~l~~~~~~~~l~~~~~~~~~k~~~~~~l~~l~~~~rDll~~~~~~~-~~~~~d~~~~l~-~~a~~~~~~~L~~~~~~l 293 (325)
T PRK08699 216 LDILAEPRLLKILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHMK-PVYYPAYEDRLL-QTASGFRPRNVFAAEDML 293 (325)
T ss_pred HHHHHccChhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHcCCC-cccCHhHHHHHH-HHHHhcCHHHHHHHHHHH
Confidence 333445556666677777766667788899999999999998764311 11111 1111 123478999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 734 SEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 734 ~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
.++...++...|+++.||.+++++.
T Consensus 294 ~~~~~~l~~n~n~~L~le~lll~~~ 318 (325)
T PRK08699 294 KQLAPYGFHTLNVKMQIEHLLINYL 318 (325)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999985
No 60
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.95 E-value=3.9e-26 Score=280.98 Aligned_cols=259 Identities=19% Similarity=0.289 Sum_probs=209.6
Q ss_pred cccchhhhhCCCCcCcccCcHHHHH---HHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQ---ALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q---~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
...||.++|||++|++++||++++. .|..++..++.++ +|||||||||||++|+++++.+++.+.
T Consensus 14 ~~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~s-lLL~GPpGtGKTTLA~aIA~~~~~~f~----------- 81 (725)
T PRK13341 14 SEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGS-LILYGPPGVGKTTLARIIANHTRAHFS----------- 81 (725)
T ss_pred ccCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHhcCcce-----------
Confidence 3559999999999999999999884 6888888888765 789999999999999999998765421
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHh-hCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV-TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~-~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
.+++. ..+..++++.++.+. ..+..+.+.+|||||+|.|+...+++|+.++++ ..++||.+|+
T Consensus 82 -------------~lna~-~~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~--g~IiLI~aTT 145 (725)
T PRK13341 82 -------------SLNAV-LAGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN--GTITLIGATT 145 (725)
T ss_pred -------------eehhh-hhhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC--ceEEEEEecC
Confidence 11111 123344555555442 222335678999999999999999999999987 5677777775
Q ss_pred CC--CcchHHHHccceEEEecCCChhHHHHHHHHHHH-------HcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 036794 563 SL--DALPHIIISRCQKFFFPKMKDADIIYTLQWIAS-------KEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG 633 (1152)
Q Consensus 563 ~~--dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iak-------keGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg 633 (1152)
.. ..+.++|.|||..|.|++++.+++..+++.++. .+++.+++++++.|+.+++||+|.++|.|+.++...
T Consensus 146 enp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~ 225 (725)
T PRK13341 146 ENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVEST 225 (725)
T ss_pred CChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 43 368889999999999999999999999999887 467899999999999999999999999999986531
Q ss_pred -----C--CCCHHHHHHHHhc----------cchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 036794 634 -----Q--RISVPLVQELVGL----------ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVI 693 (1152)
Q Consensus 634 -----~--~IT~EdV~elVg~----------v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qi 693 (1152)
+ .||.+.+.+++.. ...+.+..+++++..+|++.|+.+|.+|+..|+||..|+..|....
T Consensus 226 ~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~a 302 (725)
T PRK13341 226 PPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAA 302 (725)
T ss_pred ccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1 2788888887643 4456788899999999999999999999999999999988766643
No 61
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=99.94 E-value=3.8e-25 Score=249.74 Aligned_cols=294 Identities=17% Similarity=0.224 Sum_probs=242.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS 523 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a 523 (1152)
++|||||+.-.-+...++.+.+.+..+.. ...++..+++. +.+.+.++++.+...|+++
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~------------------~~fn~~~~d~~---~~~~~~~~~~~~~t~pff~ 60 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEW------------------KSFNYSRLDGD---DADQAIQALNEAMTPPFGS 60 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchh------------------hhcchhhcCCc---cchHHHHHHHHhcCCCCCC
Confidence 47999999999998888888876643211 01123334321 2334677888888889999
Q ss_pred CceEEEEeCCCCC---CHHHHHHHHHHHhhCCCCEEEEEEc-CCCC---cchHHHHccceEEEecCC---ChhHHHHHHH
Q 036794 524 QYRIFVFDDCDTL---SPDSWSAISKVVDRAPRRVVFILVS-SSLD---ALPHIIISRCQKFFFPKM---KDADIIYTLQ 593 (1152)
Q Consensus 524 ~~kVVIIDEID~L---s~eaqnaLLklLEepp~~VifILaT-N~~d---kL~~aL~SR~qvI~F~~p---~~~EI~eiL~ 593 (1152)
++++|+|++++.+ +.+..+.|..+++.+++++++|+++ +.++ ++...+...+.+..|.++ +.+++..|+.
T Consensus 61 ~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~ 140 (326)
T PRK07452 61 GGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVE 140 (326)
T ss_pred CceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHH
Confidence 9999999998665 5677889999999988888888864 4443 456667777888888766 4567999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh--C--CCCCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHH
Q 036794 594 WIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--G--QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTV 669 (1152)
Q Consensus 594 ~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl--g--~~IT~EdV~elVg~v~ee~ifdLldAils~d~~~AL 669 (1152)
..+++.|+.|+++|+++|+.+.++|++.+.|+|+++++| + +.||.++|.+++... ++++|+++++++.+|..+|+
T Consensus 141 ~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~-~~~if~l~dai~~~~~~~A~ 219 (326)
T PRK07452 141 RTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT-TQNSLQLADALLQGNTGKAL 219 (326)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC-cCcHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999988 3 369999999999886 68999999999999999999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchh-H-------------HHHHHhCCCCcccHHHHHHHHHHHHH
Q 036794 670 KNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH-R-------------RKFFRRQPLSKEEMEKLRQALKTLSE 735 (1152)
Q Consensus 670 k~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~-~-------------~~~~~r~~ls~~s~~kL~qaL~~L~e 735 (1152)
+.|+.|+.+|++|+.|++.|.++||.|+.++.....|.. . +.++..+++.+|+.+.|.+++..|.+
T Consensus 220 ~~l~~L~~~g~~p~~il~~l~~~~r~l~~~k~~~~~G~~~~~~ia~~lgi~~p~~~~~~~~~~~~~s~~~L~~~l~~L~~ 299 (326)
T PRK07452 220 ALLDDLLDANEPALRIVATLTGQFRTWLWVKLLVESGERDVKVIAKAAGIGNPKRIYFLRKEVQGLSSQQLLKLLPLLLD 299 (326)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999988765433321 1 12223445779999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHcCC
Q 036794 736 AEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 736 aD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+|.++|++.++..+||.+++++|.
T Consensus 300 ~D~~iK~g~~~~~~le~~i~~~~~ 323 (326)
T PRK07452 300 LEASLKQGANPINALQDKLIELCQ 323 (326)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHH
Confidence 999999999999999999999995
No 62
>PRK07914 hypothetical protein; Reviewed
Probab=99.94 E-value=1.1e-24 Score=246.29 Aligned_cols=293 Identities=14% Similarity=0.139 Sum_probs=241.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcc-cCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhC
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNC-QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTS 519 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~-~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~ 519 (1152)
.+.+.|||||+.-.-.......|.+.+.. ... ...++..+++. ..++++ + ..+...
T Consensus 3 ~l~~iYll~G~E~~l~~~~~~~i~~~~~~~~~~------------------~~~n~~~~d~~-~~~~~~---i-~~~~t~ 59 (320)
T PRK07914 3 EPAPLHLVLGDEELLVERAVAAVLRSARQRAGT------------------ADVPVSRMRAG-DVSTYE---L-AELLSP 59 (320)
T ss_pred CCCceEEEEecHHHHHHHHHHHHHHHHhcCcCC------------------CCCceEEeccc-cCCHHH---H-HHhcCC
Confidence 35678999999988888777777665542 110 01124455432 234433 3 444477
Q ss_pred CCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC---cchHHHHccc-eEEEecCC-ChhHHHHHHHH
Q 036794 520 RPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD---ALPHIIISRC-QKFFFPKM-KDADIIYTLQW 594 (1152)
Q Consensus 520 P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d---kL~~aL~SR~-qvI~F~~p-~~~EI~eiL~~ 594 (1152)
|+++++++|+|+++..+..+..+.|..+++.+++.+++|++++... ++.++|.... .++.|.++ +..++..|+..
T Consensus 60 plF~~rRlV~v~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~ 139 (320)
T PRK07914 60 SLFAEERVVVLEAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRK 139 (320)
T ss_pred CCCCCceEEEEeChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHH
Confidence 9999999999999877777777899999999988888888764332 3555677664 58899999 99999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHH
Q 036794 595 IASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLR 673 (1152)
Q Consensus 595 iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~ 673 (1152)
.+++.|+.|+++|+++|+++.++|+..+.++|++++++ ++.||.++|.+++....+.++|+++|+++.+|..+|+.+|+
T Consensus 140 ~a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~~~~A~~~l~ 219 (320)
T PRK07914 140 EFRSLRVKVDDDTVTALLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGAAEALR 219 (320)
T ss_pred HHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999876 66899999999999999999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHH------------hCCCCcccHHHHHHHHHHHHHHHHHhc
Q 036794 674 VIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFR------------RQPLSKEEMEKLRQALKTLSEAEKQLR 741 (1152)
Q Consensus 674 ~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~------------r~~ls~~s~~kL~qaL~~L~eaD~qLK 741 (1152)
.|+..|++|+.|++.|+++||.|+.++... + ....+++ .+++++|+.++|.+++..|.++|.++|
T Consensus 220 ~L~~~ge~p~~il~~l~~~~r~L~~~k~~~--~-~~~~i~~~l~i~p~~~~~~~~~~~~~s~~~L~~~l~~l~~~D~~lK 296 (320)
T PRK07914 220 WAMMRGEPHVVLADALAEAVHTIARVGPLS--G-DPYRLAGELGMPPWRVQKAQKQARRWSRDTVATAMRVVAALNADVK 296 (320)
T ss_pred HHHHCCCchHHHHHHHHHHHHHHHHHHHhc--C-CHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999987541 2 2222211 346779999999999999999999999
Q ss_pred c-CCCHHHHHHHHHHHcCC
Q 036794 742 M-SNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 742 ~-s~dprl~LE~lLLkLa~ 759 (1152)
+ ..++.++||.+++++|.
T Consensus 297 ~~~~~~~~~lE~~i~~~~~ 315 (320)
T PRK07914 297 GAAADADYALESAVRRVAE 315 (320)
T ss_pred cCCCChHHHHHHHHHHHHH
Confidence 8 57999999999999995
No 63
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.94 E-value=1.3e-24 Score=242.27 Aligned_cols=192 Identities=25% Similarity=0.440 Sum_probs=170.0
Q ss_pred CcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCC-
Q 036794 425 GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGN- 503 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~- 503 (1152)
.|+.+++.|..++..++++|+|||+|| +||+++|+.||+.+.|.......|||.|..|..+..+.++|+..+.+.+.
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~ 83 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQV 83 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCc
Confidence 478899999999999999999999996 68999999999999999766668999999999999999999999988654
Q ss_pred CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCC
Q 036794 504 FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKM 583 (1152)
Q Consensus 504 ~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p 583 (1152)
+++++|+++...+...|..+.++|+|||++|.|+..+.|+|||+|||||.+++||++|++++.+++||+|||+.|.|++
T Consensus 84 I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~- 162 (290)
T PRK07276 84 IKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK- 162 (290)
T ss_pred CCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 036794 584 KDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626 (1152)
Q Consensus 584 ~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~L 626 (1152)
+.+++.++|. ++| ++.+....++... |++..|+..+
T Consensus 163 ~~~~~~~~L~----~~g--~~~~~a~~la~~~-~s~~~A~~l~ 198 (290)
T PRK07276 163 NEAYLIQLLE----QKG--LLKTQAELLAKLA-QSTSEAEKLA 198 (290)
T ss_pred cHHHHHHHHH----HcC--CChHHHHHHHHHC-CCHHHHHHHh
Confidence 6666666654 456 4555556666555 5788877665
No 64
>PRK05629 hypothetical protein; Validated
Probab=99.94 E-value=3.1e-24 Score=242.46 Aligned_cols=294 Identities=13% Similarity=0.124 Sum_probs=237.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCC
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR 520 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P 520 (1152)
.+.++|||||+.-.-.......|.+.+..... ...++..+++ ...++++ +++.. ..|
T Consensus 4 ~l~~vyL~~G~e~~l~~~~~~~i~~~~~~~~~------------------~~~n~~~~d~-~e~~~~~---l~~~~-t~s 60 (318)
T PRK05629 4 VQPPVHLVLGDDEFLAERARLNIVHDIRSSMA------------------DSLQVTTLKA-SEVSQGE---LLDAL-SPS 60 (318)
T ss_pred cCCceEEEEeCHHHHHHHHHHHHHHHHhccCC------------------CCCceEEeec-ccCCHHH---HHHhh-CcC
Confidence 45679999998765555555555555432211 1123555553 2234444 44433 678
Q ss_pred CCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC---cchHHHHccceEEEecCCChhHHHHHHHHHHH
Q 036794 521 PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD---ALPHIIISRCQKFFFPKMKDADIIYTLQWIAS 597 (1152)
Q Consensus 521 ~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d---kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iak 597 (1152)
+++.+++|+|+..+.......+.|+.+++.+++++++|+++...+ ++.+.|...+..+.|.++...++..|+...++
T Consensus 61 lF~~~rlV~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~ 140 (318)
T PRK05629 61 LFGEDRVIVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFK 140 (318)
T ss_pred ccCCceEEEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHH
Confidence 999999999999877666667889999999888888888876543 35567888888999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHH
Q 036794 598 KEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIM 676 (1152)
Q Consensus 598 keGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL 676 (1152)
+.|+.|+++|+++|+..+++|+..+.++|++|+++ ++.||.++|++++....+.++|+++|+++.+|..+|+.+|++|+
T Consensus 141 ~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g~~~~Al~~l~~l~ 220 (318)
T PRK05629 141 NHGVRPTPDVVHALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADLACAGQVSKAVASTRRAL 220 (318)
T ss_pred HcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877 56799999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHHHHhchhhhhcch-hHH---------HHHH---hCCCCcccHHHHHHHHHHHHHHHHHhcc-
Q 036794 677 ETGVEPLALMSQLATVITDILAGSYDFTKDR-HRR---------KFFR---RQPLSKEEMEKLRQALKTLSEAEKQLRM- 742 (1152)
Q Consensus 677 ~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~-~~~---------~~~~---r~~ls~~s~~kL~qaL~~L~eaD~qLK~- 742 (1152)
..|++|+.|++.|.++++.++.... ..+. ... +|.. .+++++|+.+.|.+++..|.++|.++|+
T Consensus 221 ~~g~~pi~il~~l~~~~r~l~~l~~--~~~~~~~~~ia~~l~i~p~~~~~~~~~ar~~s~~~L~~~l~~l~~~D~~~K~~ 298 (318)
T PRK05629 221 QLGVSPVALAAALSMKVGQIARLYS--TRGRIDSFELAKELGMPPFVVEKTAKVARNWSGDAVSEAVILMADLDAAVKGQ 298 (318)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHh--hcCCCCHHHHHHHcCCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999998777654322 1111 111 1211 3467799999999999999999999998
Q ss_pred CCCHHHHHHHHHHHcCC
Q 036794 743 SNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 743 s~dprl~LE~lLLkLa~ 759 (1152)
+.++.+.||.++++++.
T Consensus 299 ~~d~~~~lE~~i~~~~~ 315 (318)
T PRK05629 299 GGDPEFAIESAVRRVAE 315 (318)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 55999999999999984
No 65
>PRK05907 hypothetical protein; Provisional
Probab=99.94 E-value=2.7e-24 Score=242.46 Aligned_cols=288 Identities=16% Similarity=0.156 Sum_probs=231.6
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHH-cccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHH
Q 036794 430 AQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL-NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFES 508 (1152)
Q Consensus 430 ~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL-~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vde 508 (1152)
+..+.+.++.|+ ++||+||..- ..+.+.|.+.+ +... ..++. ..+++
T Consensus 7 ~~~~~~~~~~~~--~~y~~~g~~~---~~~~~~l~~~~~~~~~------------------------~~fdg-~~~~~-- 54 (311)
T PRK05907 7 FKDFSQYYEEKR--PAVIVIGSSS---EEDKDIFIELLVSGRK------------------------SEFDG-QGLLQ-- 54 (311)
T ss_pred HHHHHHHHhcCC--ceEEEecCCc---HHHHHHHHHHhCCCcc------------------------ceecC-CCCCH--
Confidence 345566678888 7899999876 55555554444 3221 11222 22334
Q ss_pred HHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEE-EEcCCCCc---chHHHHccceEE----Ee
Q 036794 509 ILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFI-LVSSSLDA---LPHIIISRCQKF----FF 580 (1152)
Q Consensus 509 IreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifI-LaTN~~dk---L~~aL~SR~qvI----~F 580 (1152)
.++++.+...|+++.+++|++.+.+.+.....+.|..++++|++.+++| ++. ..++ +...|.. +..+ .|
T Consensus 55 -~~ii~~aetlPfFaerRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~-~~d~~kkl~K~i~k-~~~v~~~~e~ 131 (311)
T PRK05907 55 -QELLSWTEHFGLFASQETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTT-KQECFSSLSKKLSS-ALCLSLFGEW 131 (311)
T ss_pred -HHHHHHHhcCCcccCeEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEe-cccHHHHHHHHHhh-cceecccccc
Confidence 4566777778999999999998888777767789999999998875555 554 3332 3344443 4444 89
Q ss_pred cCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHh---CCCCCHHHHHHHHhccchhhHHHH
Q 036794 581 PKMKDADIIYTLQWIASKEGIEIDKDALKLIASRS-DGSLRDAEMTLEQLSLL---GQRISVPLVQELVGLISDEKLVDL 656 (1152)
Q Consensus 581 ~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s-~GDLR~Ain~LEkLsLl---g~~IT~EdV~elVg~v~ee~ifdL 656 (1152)
+++.+.++..|+...++++|+.|+++|+++|+.++ ++|+..+.++|++|++| ++.||.++|.+++....++++|+|
T Consensus 132 ~~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF~L 211 (311)
T PRK05907 132 FADRDKRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLWKL 211 (311)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHHHH
Confidence 99999999999999999999999999999999999 69999999999999888 346999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhchhhhhcchhH-HHHHHhCCCCcccHHHHHHHHHHHH
Q 036794 657 LDLALSADTVNTVKNLRVIMET-GVEPLALMSQLATVITDILAGSYDFTKDRHR-RKFFRRQPLSKEEMEKLRQALKTLS 734 (1152)
Q Consensus 657 ldAils~d~~~ALk~L~~LL~~-G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~-~~~~~r~~ls~~s~~kL~qaL~~L~ 734 (1152)
+|++..++..+|+++++.|+.+ |++|+.|++.|++|| |+.++.....+... ..||. -|+.++|.+++..|.
T Consensus 212 ~dai~~~~~~~Al~il~~Ll~~~ge~p~~ILall~rQf--l~~~k~l~~~g~~~~~p~~v-----afs~~~L~~~~~~l~ 284 (311)
T PRK05907 212 RDALLRRDRVEGHSLLRSLLSDMGEDPLGIIAFLRSQC--LYGLRSIEEQSKERKHRIFV-----AYGKERLLQALNLLF 284 (311)
T ss_pred HHHHHccCHHHHHHHHHHHHHhcCCChHHHHHHHHHHH--HHHHHHHHHhcCCCCCCeEE-----EECHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999 88877665554421 12222 289999999999999
Q ss_pred HHHHHhcc-CCCHHHHHHHHHHHcCC
Q 036794 735 EAEKQLRM-SNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 735 eaD~qLK~-s~dprl~LE~lLLkLa~ 759 (1152)
++|.++|+ ..++.++||.+++++|.
T Consensus 285 ~~D~~iKtg~~d~~~~lElli~~~~~ 310 (311)
T PRK05907 285 YAESLIKNNVQDPILAVETLVIRMTN 310 (311)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 99999999 45999999999999984
No 66
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=99.93 E-value=5.7e-24 Score=241.98 Aligned_cols=296 Identities=18% Similarity=0.195 Sum_probs=239.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCC
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR 520 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P 520 (1152)
...++|||||+........++.+.+.+...... ..++..+++... + .++.++++.+...|
T Consensus 18 ~~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~------------------~fn~~~~~~~e~-~-~~~~~~~~~~~t~s 77 (343)
T PRK06585 18 PKIRAVLLYGPDRGLVRERARRLAKSVVPDLDD------------------PFAVVRLDGDDL-D-ADPARLEDEANAIS 77 (343)
T ss_pred CCCeEEEEeCCchHHHHHHHHHHHHHhcCCCCC------------------CcceeeccHHHh-h-cCHHHHHHHHhCCC
Confidence 355799999999999888888888776432100 011333332100 0 01456778888889
Q ss_pred CCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC---cchHHHH--ccceEEEecCCChhHHHHHHHHH
Q 036794 521 PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD---ALPHIII--SRCQKFFFPKMKDADIIYTLQWI 595 (1152)
Q Consensus 521 ~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d---kL~~aL~--SR~qvI~F~~p~~~EI~eiL~~i 595 (1152)
+++.+++|+|.+.+ ....+.|..+++.+++++++|+.+...+ ++...+. ..+..+.|.+++..++..|+..+
T Consensus 78 lF~~~rlViv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~ 154 (343)
T PRK06585 78 LFGGRRLIWVRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDDE 154 (343)
T ss_pred CCCCceEEEEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHH
Confidence 99999999999654 3456689999999888888888776554 2344332 23457899999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC---CCCCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHH
Q 036794 596 ASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG---QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNL 672 (1152)
Q Consensus 596 akkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg---~~IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L 672 (1152)
+++.|+.|+++|+++|++.++||++.+.|+|++++++. +.||.++|.++++...+.++|+++++++.+|..+|+..+
T Consensus 155 ~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~dai~~~~~~~a~~~l 234 (343)
T PRK06585 155 LAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAALAGDLAAFERAL 234 (343)
T ss_pred HHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999883 469999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHH---------HHH-----hCCCCcccHHHHHHHHHHHHHHHH
Q 036794 673 RVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRK---------FFR-----RQPLSKEEMEKLRQALKTLSEAEK 738 (1152)
Q Consensus 673 ~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~---------~~~-----r~~ls~~s~~kL~qaL~~L~eaD~ 738 (1152)
+.|+.+|++|+.|++.|+++||+|+.++.....|..... ++. .+++.+|+.+.|.+++..|.++|.
T Consensus 235 ~~ll~~g~~p~~il~~L~~~~r~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~ 314 (343)
T PRK06585 235 DRALAEGTAPVLILRAALRHFQRLHIVRLKVENGKSAEQAIASLRPPVFFKRKPDFEKALRRWSLERLLRALERLQAAEL 314 (343)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhCCCCCcchHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998766544433221 111 234569999999999999999999
Q ss_pred Hhcc-CCCHHHHHHHHHHHcCC
Q 036794 739 QLRM-SNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 739 qLK~-s~dprl~LE~lLLkLa~ 759 (1152)
++|+ +.++.++||.+++++|.
T Consensus 315 ~lK~~~~~~~~~le~~i~~~~~ 336 (343)
T PRK06585 315 DCRRNPALADAIARRVLLSIAV 336 (343)
T ss_pred HHhcCCCcHHHHHHHHHHHHHH
Confidence 9998 55889999999999995
No 67
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.93 E-value=2e-25 Score=233.26 Aligned_cols=186 Identities=27% Similarity=0.520 Sum_probs=171.6
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCC-CCCHHHH
Q 036794 431 QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVG-NFDFESI 509 (1152)
Q Consensus 431 q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas-~~~vdeI 509 (1152)
+.|.+.+..++++++|||+||+|+|||++|+.+++.+.|.......||+.|..|..+..+.++|+..+...+ ..+++.+
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV 81 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH
Confidence 467889999999999999999999999999999999999866677899999999999999999888876543 4678999
Q ss_pred HHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHH
Q 036794 510 LDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589 (1152)
Q Consensus 510 reLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~ 589 (1152)
+++++.+...|+.+.++||||||+|.|+..+++.|+++||+++.+++||++|+++.++.++|.+||+.+.|.+++.+++.
T Consensus 82 ~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~ 161 (188)
T TIGR00678 82 RELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALL 161 (188)
T ss_pred HHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Q 036794 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDA 622 (1152)
Q Consensus 590 eiL~~iakkeGl~Id~dALelLAe~s~GDLR~A 622 (1152)
+||... | ++++++++|+..++|++|.+
T Consensus 162 ~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 162 QWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred HHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 999765 4 78999999999999999864
No 68
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.93 E-value=1.5e-24 Score=241.29 Aligned_cols=265 Identities=18% Similarity=0.219 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCC---C
Q 036794 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGN---F 504 (1152)
Q Consensus 428 ~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~---~ 504 (1152)
...+.|.+++..++.+|+|||+||+|+||+++|..+|+.+.|...+ ..|..+..+.++|+..+.+.+. .
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~--------~~c~~~~~~~HPD~~~i~p~~~~~~I 75 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSP--------EAAYKISQKIHPDIHEFSPQGKGRLH 75 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCc--------cHHHHHhcCCCCCEEEEecCCCCCcC
Confidence 4567899999999999999999999999999999999999997421 2477788899999999866543 6
Q ss_pred CHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCCC
Q 036794 505 DFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMK 584 (1152)
Q Consensus 505 ~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~ 584 (1152)
++++++++.+.+...|+.+.++|+|||++|.|+.+++|+|||+|||||.+++||++|++++.+++||+|||+.+.|+++.
T Consensus 76 ~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~~ 155 (290)
T PRK05917 76 SIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPMEE 155 (290)
T ss_pred cHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccchh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998861
Q ss_pred hhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHH--HHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHHHHHHHc
Q 036794 585 DADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLR--DAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALS 662 (1152)
Q Consensus 585 ~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR--~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdLldAils 662 (1152)
...++++.+..++..++|++. .+...++. . . +. ...
T Consensus 156 ---------------~~~i~~~~~~~l~~~~~g~~~~~~~~~~l~~------~-------------~-~~----~~~--- 193 (290)
T PRK05917 156 ---------------KTLVSKEDIAYLIGYAQGKESVTEVGQIVKG------S-------------A-DT----DKQ--- 193 (290)
T ss_pred ---------------ccCCCHHHHHHHHHHhCCChhHHHHHHHHhc------c-------------h-HH----HHH---
Confidence 124788999999999999886 11111111 0 0 00 000
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc-hhHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHhc
Q 036794 663 ADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD-RHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLR 741 (1152)
Q Consensus 663 ~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g-~~~~~~~~r~~ls~~s~~kL~qaL~~L~eaD~qLK 741 (1152)
.+ .+....++..+..+|||++..+...... ....++.. .+..++...+..+++.+.++...++
T Consensus 194 --------~~------re~~~~~L~~ll~~~RD~l~~~~~~~~~~l~~~d~~~--~l~~~~~~~l~~~i~~i~~a~~~l~ 257 (290)
T PRK05917 194 --------VL------RDKTKAMLEVLLQLFRDRFLLALKVPASALAYPDLLK--EILTLPVLPLEKVLSIIERAVQALD 257 (290)
T ss_pred --------HH------HHHHHHHHHHHHHHHHHHHHHHcCCchhhhccHHHHH--HHHhcccccHHHHHHHHHHHHHHHH
Confidence 00 1234456778888899988765433221 11111111 1111223337889999999999999
Q ss_pred cCCCHHHHHHHHHHHcC
Q 036794 742 MSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 742 ~s~dprl~LE~lLLkLa 758 (1152)
...++++.||.++++|.
T Consensus 258 ~N~N~~l~le~l~l~l~ 274 (290)
T PRK05917 258 NSSSAPSCLEWVALQLW 274 (290)
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 99999999999999987
No 69
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=99.93 E-value=2.7e-23 Score=234.83 Aligned_cols=305 Identities=21% Similarity=0.253 Sum_probs=243.7
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHH
Q 036794 431 QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESIL 510 (1152)
Q Consensus 431 q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIr 510 (1152)
..+...+..+ ..+.|||||+.=.-+...+..+.+.+..... ...++..++.. ..+ +.
T Consensus 6 ~~~~~~~~~~-~~~~~li~G~d~~l~~~~~~~i~~~~~~~~~------------------~~~~~~~~d~~-~~~---~~ 62 (340)
T PRK05574 6 EQLEKQLKKG-LAPLYLLYGDEPLLLQEAKDAIRAAARAQGF------------------DERNVFTFDGS-ETD---WD 62 (340)
T ss_pred HHHHHHHhCC-CCceEEEEcCcHHHHHHHHHHHHHHHHcCCC------------------ceeeEEEeecC-CCC---HH
Confidence 3455566666 8889999998866666666666655432110 01123444432 122 45
Q ss_pred HHHHHHhhCCCCCCceEEEEeCCCCCCHH----HHHHHHHHHhhCCC--CEEEEEEcCCCC---cc---hHHHHccceEE
Q 036794 511 DLLDNMVTSRPPSQYRIFVFDDCDTLSPD----SWSAISKVVDRAPR--RVVFILVSSSLD---AL---PHIIISRCQKF 578 (1152)
Q Consensus 511 eLle~a~~~P~~a~~kVVIIDEID~Ls~e----aqnaLLklLEepp~--~VifILaTN~~d---kL---~~aL~SR~qvI 578 (1152)
++++.+...|+++++++|+|++++.+... ....|..++ ++++ .++||+.++..+ ++ .+++.+++..+
T Consensus 63 ~l~~~~~t~~lF~~~klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~ 141 (340)
T PRK05574 63 DVLEACQSLPLFSDRKLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVV 141 (340)
T ss_pred HHHHHhhccCccccCeEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEE
Confidence 66677778899999999999999998665 334455555 4343 566677766554 23 56788889999
Q ss_pred EecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--CCCCHHHHHHHHhccchhhHHHH
Q 036794 579 FFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG--QRISVPLVQELVGLISDEKLVDL 656 (1152)
Q Consensus 579 ~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg--~~IT~EdV~elVg~v~ee~ifdL 656 (1152)
.|++++..++..|+...++..|+.|+++++++|++..+||+..+.++|++++++. +.||.++|.+++....+.++|++
T Consensus 142 ~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~f~l 221 (340)
T PRK05574 142 EAQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDVFDL 221 (340)
T ss_pred EcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999998873 34999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHH------------hCCCCcccHH
Q 036794 657 LDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFR------------RQPLSKEEME 724 (1152)
Q Consensus 657 ldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~------------r~~ls~~s~~ 724 (1152)
+++++.+|...|++.++.|+.+|.+|+.|++.|.+++++|+.++.....+.....++. .+.+.+|+.+
T Consensus 222 ~dai~~~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~l~~~k~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~ 301 (340)
T PRK05574 222 VDAILAGKIKRALRILDGLRLEGEEPIKLLAALQREFRLLLQLKILSQQGYPLQQLAKELRVWPYRVKLALRALQRLSLK 301 (340)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCChhHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999998766544443332222 2356699999
Q ss_pred HHHHHHHHHHHHHHHhccC--CCHHHHHHHHHHHcCC
Q 036794 725 KLRQALKTLSEAEKQLRMS--NDKLTWLTAALLQLAP 759 (1152)
Q Consensus 725 kL~qaL~~L~eaD~qLK~s--~dprl~LE~lLLkLa~ 759 (1152)
.|.+++..|.++|.++|++ .++++.||.++++||.
T Consensus 302 ~L~~~l~~L~~~d~~iK~~~~~~~~~~le~~ii~l~~ 338 (340)
T PRK05574 302 QLKQAIQLLAETDYQIKTGYGGDKWLELELLLLKLAG 338 (340)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999997 5999999999999995
No 70
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.93 E-value=3.9e-24 Score=231.26 Aligned_cols=319 Identities=21% Similarity=0.319 Sum_probs=244.9
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCC--------CCCCCC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQP--------KPCGFC 481 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~--------epcg~c 481 (1152)
.|.+||||++|+.++++++....|+.....+.+|| +|||||+|+||-|.+.++.+++.....+.- .|-+.-
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PH-ll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kk 80 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPH-LLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKK 80 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCCe-EEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCce
Confidence 69999999999999999999999999888888887 899999999999999999999877543321 111110
Q ss_pred CccccccCCCccceEEeCCC--CCCCHHHHHHHHHHHhhCC-----CCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCC
Q 036794 482 NSCISHDRGKSRNIKEVGPV--GNFDFESILDLLDNMVTSR-----PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRR 554 (1152)
Q Consensus 482 ~~c~~i~~g~~~dviEIdaa--s~~~vdeIreLle~a~~~P-----~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~ 554 (1152)
..+..-++....|+.|. ++.+.--+.+++.++.... ....++||+|-|+|.|+.++|.+|.+++|.+..+
T Consensus 81 ---lEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 81 ---LEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred ---EEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 12222233445677664 3445445777887764322 1235899999999999999999999999999999
Q ss_pred EEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 036794 555 VVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ 634 (1152)
Q Consensus 555 VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~ 634 (1152)
+.+|++||...++.++|+|||-.++++.|+++|+...|..+++++|+.++.+.+..|++.++||+|.++=+||.+.+...
T Consensus 158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~ 237 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNE 237 (351)
T ss_pred ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876533
Q ss_pred CCCHHHHHHHHhccchhhHHHHHHHHHcCCHH----HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHH
Q 036794 635 RISVPLVQELVGLISDEKLVDLLDLALSADTV----NTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRR 710 (1152)
Q Consensus 635 ~IT~EdV~elVg~v~ee~ifdLldAils~d~~----~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~ 710 (1152)
..+.+- ..+...--+..+.++...++..... +.-..|++|+..+..|-.|+..|..++-.
T Consensus 238 ~~~a~~-~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~--------------- 301 (351)
T KOG2035|consen 238 PFTANS-QVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEELLL--------------- 301 (351)
T ss_pred cccccC-CCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHh---------------
Confidence 221110 0011111122333444444444332 34468899999999999999988876432
Q ss_pred HHHHhCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHc
Q 036794 711 KFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757 (1152)
Q Consensus 711 ~~~~r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkL 757 (1152)
+.+.+--...++..+..|.+++.|...-+.||.|+.++
T Consensus 302 ---------~~d~~~k~~~~~~Aa~yEhRl~lG~KaIfHLEaFVA~f 339 (351)
T KOG2035|consen 302 ---------KCDTQLKLEVIQHAAKYEHRLRLGQKAIFHLEAFVAKF 339 (351)
T ss_pred ---------cCCchhHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHH
Confidence 23333344567788889999999999999999998876
No 71
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.93 E-value=2.2e-24 Score=240.79 Aligned_cols=228 Identities=28% Similarity=0.441 Sum_probs=191.8
Q ss_pred CcccCcHHHHHHHHHHHH-hCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeC
Q 036794 421 RDLVGQNLVAQALSNAVM-RRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVG 499 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~-~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEId 499 (1152)
++++|++.++..+..++. .++.+|+|||+||||+|||++|.++|+.+.|.......+|..|..|..+..+.++++.+++
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 368899998888888887 6778999999999999999999999999999998888999999999999999999999999
Q ss_pred CCCCCC----HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccc
Q 036794 500 PVGNFD----FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRC 575 (1152)
Q Consensus 500 aas~~~----vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~ 575 (1152)
+..... .+.++++.+.....+..++++||||||+|.|+.+++++|++++|+|+.+++||++||++.++.++|+|||
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc 160 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRC 160 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcc
Confidence 876644 6788888888888887789999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchh----
Q 036794 576 QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDE---- 651 (1152)
Q Consensus 576 qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee---- 651 (1152)
+.+.|++++.... ++..+ ++++..++....||+|.++|.++.++.. .+....+.+++......
T Consensus 161 ~~i~f~~~~~~~~------i~~~e-----~~~l~~i~~~~~gd~r~~i~~lq~~~~~--~~~~~~~~~~~~~~~~~~~~~ 227 (325)
T COG0470 161 QRIRFKPPSRLEA------IAWLE-----DQGLEEIAAVAEGDARKAINPLQALAAL--EIGEESIYEALLLALPESLAQ 227 (325)
T ss_pred eeeecCCchHHHH------HHHhh-----ccchhHHHHHHHHHHHcCCCHHHHHHHh--cccHHHHHHHHHhhChhhccc
Confidence 9999998544333 33333 6788889999999999999999998776 33444444444433333
Q ss_pred -hHHHHHHHHH
Q 036794 652 -KLVDLLDLAL 661 (1152)
Q Consensus 652 -~ifdLldAil 661 (1152)
...+++..+.
T Consensus 228 ~~~~~~~~~~~ 238 (325)
T COG0470 228 LAALELLKLAE 238 (325)
T ss_pred ccHHHHHHHHH
Confidence 5555555443
No 72
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.93 E-value=4.2e-25 Score=227.35 Aligned_cols=159 Identities=27% Similarity=0.551 Sum_probs=137.3
Q ss_pred CcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCC-
Q 036794 425 GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGN- 503 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~- 503 (1152)
||+.+++.|.+++..++++|+|||+||+|+||+++|+++|+.+.|...... +|+.|..|..+..+.++|+..+.+...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~-~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED-PCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT---SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC-CCCCCHHHHHHHhccCcceEEEeccccc
Confidence 899999999999999999999999999999999999999999999876655 999999999999999999999987654
Q ss_pred --CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEec
Q 036794 504 --FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFP 581 (1152)
Q Consensus 504 --~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~ 581 (1152)
.++++++++.+.+...|..+.++|+||||+|.|+.+++|+||++||+||.+++|||+|+++++++++|+|||+.|.|+
T Consensus 80 ~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~ 159 (162)
T PF13177_consen 80 KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFR 159 (162)
T ss_dssp SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE-
T ss_pred chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 036794 582 KMK 584 (1152)
Q Consensus 582 ~p~ 584 (1152)
+++
T Consensus 160 ~ls 162 (162)
T PF13177_consen 160 PLS 162 (162)
T ss_dssp ---
T ss_pred CCC
Confidence 864
No 73
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=99.92 E-value=3.5e-23 Score=235.09 Aligned_cols=300 Identities=16% Similarity=0.204 Sum_probs=240.9
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHH
Q 036794 431 QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESIL 510 (1152)
Q Consensus 431 q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIr 510 (1152)
..|...++.+.++++|||||+.=.-...++..|.+.+...... .+ +..+ ..+ +.
T Consensus 4 ~~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~~-------------------~~-~~~~---~~~---~~ 57 (328)
T PRK08487 4 KELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENEL-------------------KT-LYFD---EYD---FE 57 (328)
T ss_pred HHHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchHh-------------------hh-hchh---hcc---HH
Confidence 4677788889999999999998888888888777665432100 00 1111 123 35
Q ss_pred HHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc---chHHHHcc--ceEEEecCCCh
Q 036794 511 DLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA---LPHIIISR--CQKFFFPKMKD 585 (1152)
Q Consensus 511 eLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk---L~~aL~SR--~qvI~F~~p~~ 585 (1152)
++++.+...|+++++++|+|.+...+.......|..+++.+++.+++|++....++ +...+... +..+.|.+++.
T Consensus 58 ~i~~~~~t~plF~~~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~ 137 (328)
T PRK08487 58 QAKDFLSQSSLFGGKNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNA 137 (328)
T ss_pred HHHHHHhcccccCCceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCH
Confidence 67777778899999999999988777766778999999998877777776555542 22323222 55799999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHHHHHHHcCCH
Q 036794 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADT 665 (1152)
Q Consensus 586 ~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdLldAils~d~ 665 (1152)
.++..|+...+++.|+.|+++|+++|+.++++|+..+.++|++|++|.+.||.++|.+++....+.++|+++++++.++
T Consensus 138 ~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~~It~edV~~~v~~~~e~~vF~l~dai~~g~- 216 (328)
T PRK08487 138 REALELLQERAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILNEPITLKDIQELVFGLGSVSFEDFFEKLLNKK- 216 (328)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCCHHHHHHHhcccccccHHHHHHHHHCCC-
Confidence 9999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhh-c---------chhHHHHHH---hCCCCcccHHHHHHHHHH
Q 036794 666 VNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT-K---------DRHRRKFFR---RQPLSKEEMEKLRQALKT 732 (1152)
Q Consensus 666 ~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~-~---------g~~~~~~~~---r~~ls~~s~~kL~qaL~~ 732 (1152)
.|+..++.|+..|++|+.|++.|.++|+.|+.++.... . +.....|+. .+++++|+.++|.+++..
T Consensus 217 -~a~~~l~~L~~~g~~pi~Il~~L~r~~~~L~~i~~~~~~~~~~~~a~~~~~~~~~f~~~~~~~q~~~~s~~~L~~~l~~ 295 (328)
T PRK08487 217 -DIKDDLEKLLEEGFNEIALLNSLERFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAENLAKQAIKIKEAQYKEIFEL 295 (328)
T ss_pred -cHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHhCCCCCHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 58899999999999999999999999999987543221 1 111112222 345779999999999999
Q ss_pred HHHHHHHhccC--CCHHHHHHHHHHHcC
Q 036794 733 LSEAEKQLRMS--NDKLTWLTAALLQLA 758 (1152)
Q Consensus 733 L~eaD~qLK~s--~dprl~LE~lLLkLa 758 (1152)
|.++|.++|++ .+..+.+|++++.+-
T Consensus 296 L~e~D~~lK~g~~~~~~~~~~~~~~~~~ 323 (328)
T PRK08487 296 LLEWELELKTGQKIDKNLFLLSTLIKIQ 323 (328)
T ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence 99999999996 577888898888764
No 74
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.92 E-value=3.4e-24 Score=237.61 Aligned_cols=262 Identities=20% Similarity=0.316 Sum_probs=215.0
Q ss_pred cccchhhhhCCCCcCcccCcHHHH---HHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVA---QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~---q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
.++||.++.||++++|+|||++++ ..|.+.|++++++. ++|+||||||||++|+.|+.......
T Consensus 124 qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipS-mIlWGppG~GKTtlArlia~tsk~~S------------ 190 (554)
T KOG2028|consen 124 QHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPS-MILWGPPGTGKTTLARLIASTSKKHS------------ 190 (554)
T ss_pred ccCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCc-eEEecCCCCchHHHHHHHHhhcCCCc------------
Confidence 478999999999999999999887 46889999999986 78999999999999999987654321
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhC-CCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTS-RPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~-P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
..++++.+ .+.+..+++++++..... .+..++.|+||||||.+....|..||..+|. ..+.||.+|+
T Consensus 191 ---------yrfvelSA-t~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~--G~I~lIGATT 258 (554)
T KOG2028|consen 191 ---------YRFVELSA-TNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVEN--GDITLIGATT 258 (554)
T ss_pred ---------eEEEEEec-cccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceecc--CceEEEeccc
Confidence 12555544 345678899999986533 3446778999999999999999999999997 7899999987
Q ss_pred CCC--cchHHHHccceEEEecCCChhHHHHHHHHHHH------Hc--C-----CCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 036794 563 SLD--ALPHIIISRCQKFFFPKMKDADIIYTLQWIAS------KE--G-----IEIDKDALKLIASRSDGSLRDAEMTLE 627 (1152)
Q Consensus 563 ~~d--kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iak------ke--G-----l~Id~dALelLAe~s~GDLR~Ain~LE 627 (1152)
+.. .+..+|++||.+|.+++++.+.+..+|.+-.. +. + +.+++.++++|+..+.||.|.++|.|+
T Consensus 259 ENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Le 338 (554)
T KOG2028|consen 259 ENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALE 338 (554)
T ss_pred CCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHH
Confidence 543 58889999999999999999999998887443 11 1 247889999999999999999999999
Q ss_pred HHH-Hh---CC-----CCCHHHHHHHHh----------ccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHH
Q 036794 628 QLS-LL---GQ-----RISVPLVQELVG----------LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQ 688 (1152)
Q Consensus 628 kLs-Ll---g~-----~IT~EdV~elVg----------~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~ 688 (1152)
-.. .. .+ .++.+||++.+. ...-+.|..+...+..+|...++.+|.+|++.|+||+.+...
T Consensus 339 ms~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGEdPLYVARR 418 (554)
T KOG2028|consen 339 MSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARR 418 (554)
T ss_pred HHHHHHHhhcCCcccceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCccchHHHHHHHHHccCCCcHHHHHH
Confidence 862 21 22 489999999884 334456777777778889999999999999999999999988
Q ss_pred HHHHH
Q 036794 689 LATVI 693 (1152)
Q Consensus 689 La~qi 693 (1152)
|+++.
T Consensus 419 lvR~A 423 (554)
T KOG2028|consen 419 LVRFA 423 (554)
T ss_pred HHHHh
Confidence 88753
No 75
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=99.92 E-value=6.4e-23 Score=227.84 Aligned_cols=247 Identities=24% Similarity=0.294 Sum_probs=217.2
Q ss_pred HHHHHhhCCCCCCceEEEEeCCCCCCH-HHHHHHHHHHhhCCCCEEEEEEcCCCCc---chHHHH--ccceEEEecCCCh
Q 036794 512 LLDNMVTSRPPSQYRIFVFDDCDTLSP-DSWSAISKVVDRAPRRVVFILVSSSLDA---LPHIII--SRCQKFFFPKMKD 585 (1152)
Q Consensus 512 Lle~a~~~P~~a~~kVVIIDEID~Ls~-eaqnaLLklLEepp~~VifILaTN~~dk---L~~aL~--SR~qvI~F~~p~~ 585 (1152)
+++.+...|+++.+++|+|++++.+.. ...+.|++++++++.+++||+.++.++. +...+. ++|..+.|.+++.
T Consensus 34 l~~~~~~~slf~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~ 113 (302)
T TIGR01128 34 LLEEAQTLPLFSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKE 113 (302)
T ss_pred HHHHhhccCcccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCH
Confidence 677777889999999999999999864 5678999999999999999999886653 222333 4999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHhccchhhHHHHHHHHHcC
Q 036794 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRISVPLVQELVGLISDEKLVDLLDLALSA 663 (1152)
Q Consensus 586 ~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl--g~~IT~EdV~elVg~v~ee~ifdLldAils~ 663 (1152)
.++..|+...++++|+.|+++++++|+...+||++.+.|+|++++++ ++.||.++|..++....+.++|+++++++.+
T Consensus 114 ~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~~~~~~if~l~dal~~~ 193 (302)
T TIGR01128 114 QELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSDSARFNVFDLTDALLEG 193 (302)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999888 4579999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHH------------hCCCCcccHHHHHHHHH
Q 036794 664 DTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFR------------RQPLSKEEMEKLRQALK 731 (1152)
Q Consensus 664 d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~------------r~~ls~~s~~kL~qaL~ 731 (1152)
|...++..++.|+..|++|+.|+..|.+++++|+.++.....+.....+++ .+++.+|+.+.|.+++.
T Consensus 194 ~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~L~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~L~~~l~ 273 (302)
T TIGR01128 194 KAARALRILKGLLGEGEEPLILLALLQRQLRLLLQLKRLAQQGGPLAQLASKLGIWPYRRKLALKALRRLSLAKLEQALQ 273 (302)
T ss_pred CHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999999999999999998765444422221111 34567899999999999
Q ss_pred HHHHHHHHhcc--CCCHHHHHHHHHHHcC
Q 036794 732 TLSEAEKQLRM--SNDKLTWLTAALLQLA 758 (1152)
Q Consensus 732 ~L~eaD~qLK~--s~dprl~LE~lLLkLa 758 (1152)
.|.++|.++|+ ..++++.||.++++||
T Consensus 274 ~l~~~d~~~K~~~~~~~~~~le~~i~~~~ 302 (302)
T TIGR01128 274 ELAEADLQLKGTGGGDPWLALERLLLKLA 302 (302)
T ss_pred HHHHHHHHHhCcCCCCHHHHHHHHHHHhC
Confidence 99999999993 7799999999999998
No 76
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.91 E-value=1.2e-23 Score=231.82 Aligned_cols=312 Identities=16% Similarity=0.213 Sum_probs=244.1
Q ss_pred cccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 405 NGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 405 ~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
....++|.+||||.++.++++|++++.++.+....++.+| .|||||||||||+...+.|+.+.|.....
T Consensus 25 ~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh-~L~YgPPGtGktsti~a~a~~ly~~~~~~---------- 93 (360)
T KOG0990|consen 25 PQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPH-LLFYGPPGTGKTSTILANARDFYSPHPTT---------- 93 (360)
T ss_pred cccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCc-ccccCCCCCCCCCchhhhhhhhcCCCCch----------
Confidence 4568899999999999999999999999999988888886 78999999999999999999998752111
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHH---HhhC-CC--CCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEE
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDN---MVTS-RP--PSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFI 558 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~---a~~~-P~--~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifI 558 (1152)
.-+.++++....+++-+++-+.. .... -+ .+..++||+||+|.|+.++||+|.++++....+++|+
T Consensus 94 --------~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ 165 (360)
T KOG0990|consen 94 --------SMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFA 165 (360)
T ss_pred --------hHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEE
Confidence 01333333333444433332222 2211 11 2367999999999999999999999999999999999
Q ss_pred EEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC----
Q 036794 559 LVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ---- 634 (1152)
Q Consensus 559 LaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~---- 634 (1152)
+++|.+.++.+++++||..++|.+++...+..++..+++.+.+.++++....++..+-||+|.+.|.|+-...+..
T Consensus 166 ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e 245 (360)
T KOG0990|consen 166 TISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMERKE 245 (360)
T ss_pred EeccChhhcCchhhcccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999866532
Q ss_pred -CCCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHH-HHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHH
Q 036794 635 -RISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVI-METGVEPLALMSQLATVITDILAGSYDFTKDRHRRKF 712 (1152)
Q Consensus 635 -~IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~L-L~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~ 712 (1152)
.++.++|....+.....++-++++.++.+....+..-+..+ ...|.+-..++..|..++..+..
T Consensus 246 ~~~~~~~vy~c~g~p~~~dI~~I~~~il~~~~~~~~~~is~lk~~~gla~~d~i~~l~~~~~~~~~-------------- 311 (360)
T KOG0990|consen 246 LNNPNDLVYQCKGAPQPSDIRQIIEKRMNGEDIELMLDDSELKKPKGLARQDRRAELEQRFAIVIS-------------- 311 (360)
T ss_pred CCCchhhHHHhcCCCChhHHHHHHHHHhcCchHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHhc--------------
Confidence 36667799999998888999999999999887777666666 34455666666666555543211
Q ss_pred HHhCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 713 FRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 713 ~~r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
...-...++..+.++++.+-.+.+..+.|..++-.+.
T Consensus 312 ---------~~~~~~~I~~~l~~Ie~~ls~g~~~~~ql~aii~~~~ 348 (360)
T KOG0990|consen 312 ---------KTPVEGHILYQLADIEERLSKGCMQKEQLKAIIKNFA 348 (360)
T ss_pred ---------chHHHHHHHHhHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 1133455666777777777776666666665554443
No 77
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.91 E-value=9e-22 Score=220.89 Aligned_cols=289 Identities=17% Similarity=0.187 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCcc-ceEEeCC-CCCC
Q 036794 427 NLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSR-NIKEVGP-VGNF 504 (1152)
Q Consensus 427 e~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~-dviEIda-as~~ 504 (1152)
..+++.|+++++.++++|+|||+|++|+||+.+|+.|++.+.|..... ...+.++ ++..++. ....
T Consensus 2 ~~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~------------~~~~~~p~n~~~~d~~g~~i 69 (299)
T PRK07132 2 NNWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITN------------LNEQELPANIILFDIFDKDL 69 (299)
T ss_pred chHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCC------------CCCCCCCcceEEeccCCCcC
Confidence 357889999999999999999999999999999999999999864211 1111222 3445542 2347
Q ss_pred CHHHHHHHHHHHhhCCCC-CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCC
Q 036794 505 DFESILDLLDNMVTSRPP-SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKM 583 (1152)
Q Consensus 505 ~vdeIreLle~a~~~P~~-a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p 583 (1152)
++++++++++.+...|+. ++++|||||+++.|+..++|+|+++||+||.+++||++|++++++.++|+|||+++.|.++
T Consensus 70 ~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l 149 (299)
T PRK07132 70 SKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEP 149 (299)
T ss_pred CHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCC
Confidence 789999999999888866 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHHHHHHHcC
Q 036794 584 KDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSA 663 (1152)
Q Consensus 584 ~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdLldAils~ 663 (1152)
+..++..+|... + ++++....++..++ ++..|+..+..- ..+... .+.+++..+..
T Consensus 150 ~~~~l~~~l~~~----~--~~~~~a~~~a~~~~-~~~~a~~~~~~~-------~~~~~~---------~~~~~l~~~~~- 205 (299)
T PRK07132 150 DQQKILAKLLSK----N--KEKEYNWFYAYIFS-NFEQAEKYINKE-------SENLLK---------KFEEALNKSLK- 205 (299)
T ss_pred CHHHHHHHHHHc----C--CChhHHHHHHHHcC-CHHHHHHHHhcC-------CHHHHH---------HHHHHHHHhhh-
Confidence 999999888642 3 67777777777776 588887775431 112211 11122222222
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhH-H-HHHHhCCCCcccHHHHHHHHHHHHHHHHHhc
Q 036794 664 DTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR-R-KFFRRQPLSKEEMEKLRQALKTLSEAEKQLR 741 (1152)
Q Consensus 664 d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~-~-~~~~r~~ls~~s~~kL~qaL~~L~eaD~qLK 741 (1152)
+....+.....++. .++...++..+..++||++..+......... . ...+.. . ++...| +..+.++...|+
T Consensus 206 ~~~~l~~~~~~~~~-ke~~~~ll~~l~~~~rd~l~~~~~~~~~~i~~~~~~i~~~--~-~s~~~l---i~~i~~~~~~L~ 278 (299)
T PRK07132 206 EKYELILFLNKKLT-KENALFLLKLLKFFFKSIFANKKKKNPKNIKVAFSKKKKF--K-IEFFEL---ITIIDEFLNSLE 278 (299)
T ss_pred hHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHHHHHhccCChHhHhhHHHHHHHH--h-cCHHHH---HHHHHHHHHHHH
Confidence 22222222233332 3445667888888999999876543322111 1 111111 1 555555 888899999999
Q ss_pred cCCCHHHHHHHHHHHcC
Q 036794 742 MSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 742 ~s~dprl~LE~lLLkLa 758 (1152)
...|+.+.+|.++++|.
T Consensus 279 ~N~N~~l~~e~lll~l~ 295 (299)
T PRK07132 279 TNENFNLQKQAFLVKIY 295 (299)
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 99999999999999985
No 78
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.90 E-value=5.8e-23 Score=219.89 Aligned_cols=197 Identities=21% Similarity=0.271 Sum_probs=143.3
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHh----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCC
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMR----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFC 481 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c 481 (1152)
....++.+++||++|+|+|||++++..++-.++. +..-..+|||||||+||||+|++||+++++..
T Consensus 9 ~~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~---------- 78 (233)
T PF05496_consen 9 EEEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNF---------- 78 (233)
T ss_dssp ---S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--E----------
T ss_pred CcchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCe----------
Confidence 3456888999999999999999999988765543 33334689999999999999999999988652
Q ss_pred CccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC---------
Q 036794 482 NSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP--------- 552 (1152)
Q Consensus 482 ~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp--------- 552 (1152)
..+.+..-....++..++..+ ..+.|+||||||.|++..++.|+.+||+..
T Consensus 79 --------------~~~sg~~i~k~~dl~~il~~l------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~ 138 (233)
T PF05496_consen 79 --------------KITSGPAIEKAGDLAAILTNL------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGP 138 (233)
T ss_dssp --------------EEEECCC--SCHHHHHHHHT--------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSS
T ss_pred --------------EeccchhhhhHHHHHHHHHhc------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEecccc
Confidence 222221112335555565554 456899999999999999999999999821
Q ss_pred ---------CCEEEEEEcCCCCcchHHHHccceEE-EecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Q 036794 553 ---------RRVVFILVSSSLDALPHIIISRCQKF-FFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA 622 (1152)
Q Consensus 553 ---------~~VifILaTN~~dkL~~aL~SR~qvI-~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~A 622 (1152)
+...+|.+|+....+..+|++|+.++ .+..++.+++..++.+-+...+++|+++++..||.++.|..|-|
T Consensus 139 ~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 139 NARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp S-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHH
T ss_pred ccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHH
Confidence 34568999999999999999999974 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 036794 623 EMTLEQLSLL 632 (1152)
Q Consensus 623 in~LEkLsLl 632 (1152)
.++|.++-.+
T Consensus 219 nrll~rvrD~ 228 (233)
T PF05496_consen 219 NRLLRRVRDF 228 (233)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHHHHH
Confidence 9999987544
No 79
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.90 E-value=2.9e-22 Score=219.34 Aligned_cols=230 Identities=16% Similarity=0.241 Sum_probs=179.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCC-CCCHHHHHHHHHHHhhC
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVG-NFDFESILDLLDNMVTS 519 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas-~~~vdeIreLle~a~~~ 519 (1152)
..+|+|||+||+|+||..+|.++|+.+.|... ..|||.|..|..+..+.++|+..+.+.. ..++++++++.+.+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~--~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~ 82 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKA--NGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRP 82 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCC--CCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccC
Confidence 46789999999999999999999999999863 3699999999999999999999987654 47899999999998877
Q ss_pred CCC-CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCC----------ChhHH
Q 036794 520 RPP-SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKM----------KDADI 588 (1152)
Q Consensus 520 P~~-a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p----------~~~EI 588 (1152)
++. ++++|+|||++|+|+.++.|+||++|||||.+++||++|++++.+++||+|||+.+.|+++ ++.++
T Consensus 83 s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~~i 162 (261)
T PRK05818 83 SVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESNDRYF 162 (261)
T ss_pred chhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccccChHHH
Confidence 755 5799999999999999999999999999999999999999999999999999999999888 44455
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHhccchhhHHHHHHHHH-cCCHH
Q 036794 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVGLISDEKLVDLLDLAL-SADTV 666 (1152)
Q Consensus 589 ~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~EdV~elVg~v~ee~ifdLldAil-s~d~~ 666 (1152)
.+.+.. ..+ +++ .++...+|++.++...++.+.... .-+++.++.........+.+-.++..+. .++++
T Consensus 163 ~~~L~~---~~~--~d~----~i~~~a~g~~~~a~~l~~~l~n~~~~~~~v~kl~~~~~~~~~q~~~~~l~~l~~~~~~~ 233 (261)
T PRK05818 163 QYILLS---FYS--VDE----QLQAYNNGSFSKLKNIIETLINKKNKLIQIHKAWILFKTFSYYEIAQLLNLLIPTVDPE 233 (261)
T ss_pred HHHHHH---ccC--ccH----HHHHHcCCCHHHHHHHHHHHHcccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhccCch
Confidence 554432 222 444 566678999999999999652111 1255556666666655555555555443 34555
Q ss_pred HHHHHHHHHHHhCCC
Q 036794 667 NTVKNLRVIMETGVE 681 (1152)
Q Consensus 667 ~ALk~L~~LL~~G~d 681 (1152)
+-.++++-+-.-..+
T Consensus 234 ~k~~~~~~~~~l~~n 248 (261)
T PRK05818 234 KKSKLYNLLSNLKYN 248 (261)
T ss_pred HHHHHHHHHHhcCCC
Confidence 544455444333333
No 80
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.89 E-value=5.6e-23 Score=246.95 Aligned_cols=267 Identities=21% Similarity=0.303 Sum_probs=189.2
Q ss_pred eeeehhhhhccccchhhhhcc-ccccccccccccc-ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEE
Q 036794 372 LGIFADHLLKHAVDSDLASEG-RSGGQQNLGDNRN-GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFY 449 (1152)
Q Consensus 372 iGi~~d~Llk~~~~~dl~se~-rs~~~~~l~~~~~-~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~ 449 (1152)
+|+||+.+++++...+...+. ..++..++.+.+. .+.++|.+||||.+|++++||+..++.|..++... .+..+||+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~-~~~~vLi~ 92 (531)
T TIGR02902 14 IGLYFFNALKNQQTNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGP-NPQHVIIY 92 (531)
T ss_pred HHHHHHHHHHhhcCCeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCC-CCceEEEE
Confidence 489999999998887665442 2223444444444 45889999999999999999999999999876544 34568999
Q ss_pred cCCCchHHHHHHHHHHHHcccCC-CC--CCCCCCCCcccc--ccCCCcc-ceEE-e-CC----CCCCCHHHH----HHHH
Q 036794 450 GPHGTGKTSCARIFARALNCQSL-EQ--PKPCGFCNSCIS--HDRGKSR-NIKE-V-GP----VGNFDFESI----LDLL 513 (1152)
Q Consensus 450 GPpGTGKTtlARaLAkeL~~~~~-e~--~epcg~c~~c~~--i~~g~~~-dviE-I-da----as~~~vdeI----reLl 513 (1152)
||+|||||++|+++++....... .. ..++.. ..|.. +...... .++. + ++ .+.++...+ ..++
T Consensus 93 Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~-id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l 171 (531)
T TIGR02902 93 GPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE-IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAV 171 (531)
T ss_pred CCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE-EccccccCCccccchhhcCCcccchhccccccccCCcccccCchh
Confidence 99999999999999987543211 11 112211 11211 1100000 0000 0 00 000000000 0001
Q ss_pred HHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC----------------------------CCCEEEEEEcC-CC
Q 036794 514 DNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA----------------------------PRRVVFILVSS-SL 564 (1152)
Q Consensus 514 e~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep----------------------------p~~VifILaTN-~~ 564 (1152)
. .+.+++|||||++.|+...|+.|+++|++. +.++++|++|+ ++
T Consensus 172 ~-------~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p 244 (531)
T TIGR02902 172 T-------RAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNP 244 (531)
T ss_pred h-------ccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCc
Confidence 1 245689999999999999999999999862 23567777764 67
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC---C--CCCHH
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG---Q--RISVP 639 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg---~--~IT~E 639 (1152)
+.+++++++||..+.|++++.+++..+++..+++.++.+++++++.|+.++. |.|++.|+++.++.++ + .|+.+
T Consensus 245 ~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~~A~~~~~~~It~~ 323 (531)
T TIGR02902 245 EEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS-NGREAVNIVQLAAGIALGEGRKRILAE 323 (531)
T ss_pred ccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhCCCcEEcHH
Confidence 8899999999999999999999999999999999999999999999998864 8999999999986442 2 49999
Q ss_pred HHHHHHhcc
Q 036794 640 LVQELVGLI 648 (1152)
Q Consensus 640 dV~elVg~v 648 (1152)
||.+++...
T Consensus 324 dI~~vl~~~ 332 (531)
T TIGR02902 324 DIEWVAENG 332 (531)
T ss_pred HHHHHhCCc
Confidence 999998653
No 81
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.88 E-value=5e-21 Score=217.21 Aligned_cols=209 Identities=18% Similarity=0.225 Sum_probs=168.1
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHh----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMR----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
..|..+|||.+|++++|++.+++.|..++.. +...+.+|||||||||||++|+++|++++....
T Consensus 13 ~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~------------ 80 (328)
T PRK00080 13 DEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR------------ 80 (328)
T ss_pred chhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE------------
Confidence 4567899999999999999999998877753 444567999999999999999999999875311
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC------------
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP------------ 552 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp------------ 552 (1152)
.+..........+..++..+ ..+.||||||+|.++...++.|+.++++..
T Consensus 81 ------------~~~~~~~~~~~~l~~~l~~l------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~ 142 (328)
T PRK00080 81 ------------ITSGPALEKPGDLAAILTNL------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR 142 (328)
T ss_pred ------------EEecccccChHHHHHHHHhc------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc
Confidence 11100001123344444433 456899999999999888888888887632
Q ss_pred ------CCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHH
Q 036794 553 ------RRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMT 625 (1152)
Q Consensus 553 ------~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~ 625 (1152)
+.+.+|++|+.+..+.++|++||. .+.|.+++.+++.++|...+...++.++++++..|+..++|++|.+.+.
T Consensus 143 ~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~ 222 (328)
T PRK00080 143 SIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRL 222 (328)
T ss_pred ceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHH
Confidence 346789999999999999999985 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 626 LEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 626 LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
|+++..+ .+.|+.+++..++..
T Consensus 223 l~~~~~~a~~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 223 LRRVRDFAQVKGDGVITKEIADKALDM 249 (328)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 9986433 246999999988854
No 82
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=99.88 E-value=3.6e-20 Score=211.15 Aligned_cols=305 Identities=19% Similarity=0.290 Sum_probs=243.2
Q ss_pred HHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHH
Q 036794 432 ALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILD 511 (1152)
Q Consensus 432 ~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIre 511 (1152)
.+...+..+...++|||||+.=.-....+..+.+...+...... ... ......++. .
T Consensus 5 ~~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~~~~~~~~-------------------~~~-~~~~~~~~~---~ 61 (334)
T COG1466 5 ELAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRALADGFDEN-------------------YSF-FDDSELDWA---D 61 (334)
T ss_pred HHHHHHhcCCCccEEEEecCChhHHHHHHHHHHHHHhccchhhH-------------------Hhh-cccccCCHH---H
Confidence 34556666668889999999877777777777776663211110 000 011223343 4
Q ss_pred HHHHHhhCCCCCCceEEEEeCCCCCC-HHHHHHHHHHHhhCC-CCEEEEEEcCCCCc---chHHHHcc--ceEEEecCCC
Q 036794 512 LLDNMVTSRPPSQYRIFVFDDCDTLS-PDSWSAISKVVDRAP-RRVVFILVSSSLDA---LPHIIISR--CQKFFFPKMK 584 (1152)
Q Consensus 512 Lle~a~~~P~~a~~kVVIIDEID~Ls-~eaqnaLLklLEepp-~~VifILaTN~~dk---L~~aL~SR--~qvI~F~~p~ 584 (1152)
+++.+...|+++..++|+|....... .+....+...+..+| .+++|++..+..++ +.+.+..- +.++.+.+++
T Consensus 62 ~~~~~~s~~lF~~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~ 141 (334)
T COG1466 62 LLSELESPSLFGEKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLD 141 (334)
T ss_pred HHHHhhccccccCCeeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCC
Confidence 55666667888999999999988876 445556777777777 78888887776653 33333222 6689999999
Q ss_pred hhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--CCCCHHHHHHHHhccchhhHHHHHHHHHc
Q 036794 585 DADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG--QRISVPLVQELVGLISDEKLVDLLDLALS 662 (1152)
Q Consensus 585 ~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg--~~IT~EdV~elVg~v~ee~ifdLldAils 662 (1152)
..++..|+...+++.|+.++++|+++|+...+||+..+.++|++++++. +.||.++|..++....+.++|+++++++.
T Consensus 142 ~~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~ 221 (334)
T COG1466 142 EAELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLK 221 (334)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999884 36999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHH------------hCCCCcccHHHHHHHH
Q 036794 663 ADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFR------------RQPLSKEEMEKLRQAL 730 (1152)
Q Consensus 663 ~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~------------r~~ls~~s~~kL~qaL 730 (1152)
+++.+|+..++.|+.+|++|+.|++.|.++|+.++..+.....+......+. .+++.+++.+.|.+++
T Consensus 222 g~~~~a~~~l~~L~~~ge~p~~il~~l~~~f~~~~~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~r~s~~~l~~~l 301 (334)
T COG1466 222 GDVKKALRLLRDLLLEGEEPLKLLAALTRQFRLLLQLKALAEKGKSLQQAAKSLGIPYRRKKLFKKAARRLSLKQLLKAL 301 (334)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHhcCcHHHHHHHHHHHHHcCHHHHHHHH
Confidence 9999999999999999999999999999999988888877777664443332 2234469999999999
Q ss_pred HHHHHHHHHhccCC-CHHHHHHHHHHHcCC
Q 036794 731 KTLSEAEKQLRMSN-DKLTWLTAALLQLAP 759 (1152)
Q Consensus 731 ~~L~eaD~qLK~s~-dprl~LE~lLLkLa~ 759 (1152)
+.|.++|.++|++. ++...++.+|+.++.
T Consensus 302 ~~l~~~d~~~K~~~~d~~~~l~~~l~~~~~ 331 (334)
T COG1466 302 RLLAQLDYQIKTGYGDPVWALELFLLRLLE 331 (334)
T ss_pred HHHHHHHHHHhcCCccchHHHHHHHHHHhh
Confidence 99999999999955 899999999998874
No 83
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.84 E-value=1.7e-19 Score=201.60 Aligned_cols=200 Identities=18% Similarity=0.216 Sum_probs=158.2
Q ss_pred CCcCcccCcHHHHHHHHHHHHh----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCcc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSR 493 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~ 493 (1152)
++|++|+||+++++.|..++.. ......+||+||||||||++|+++|+++++..
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~---------------------- 58 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL---------------------- 58 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE----------------------
Confidence 4699999999999999988864 23334589999999999999999999986431
Q ss_pred ceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC------------------CCE
Q 036794 494 NIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP------------------RRV 555 (1152)
Q Consensus 494 dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp------------------~~V 555 (1152)
..+..........+...+..+ ....+|||||+|.++...++.|+.++++.. ..+
T Consensus 59 --~~~~~~~~~~~~~l~~~l~~~------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 130 (305)
T TIGR00635 59 --KITSGPALEKPGDLAAILTNL------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPF 130 (305)
T ss_pred --EEeccchhcCchhHHHHHHhc------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCe
Confidence 111111111223344444433 345799999999999999889988887422 347
Q ss_pred EEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh--
Q 036794 556 VFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-- 632 (1152)
Q Consensus 556 ifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-- 632 (1152)
.+|++|+.+..+.+++++||. .+.|.+++.+++.+++...+...++.++++++..|+..++|++|.+.+.++.+..+
T Consensus 131 ~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~ 210 (305)
T TIGR00635 131 TLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQ 210 (305)
T ss_pred EEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Confidence 889999999889999999996 57999999999999999999999999999999999999999999999999886433
Q ss_pred ---CCCCCHHHHHHHHhc
Q 036794 633 ---GQRISVPLVQELVGL 647 (1152)
Q Consensus 633 ---g~~IT~EdV~elVg~ 647 (1152)
...|+.+.|.+++..
T Consensus 211 ~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 211 VRGQKIINRDIALKALEM 228 (305)
T ss_pred HcCCCCcCHHHHHHHHHH
Confidence 235999999888765
No 84
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.83 E-value=4.5e-19 Score=193.44 Aligned_cols=207 Identities=20% Similarity=0.244 Sum_probs=166.3
Q ss_pred hhhhhCCCCcCcccCcHHHHHHHHHHHHh----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMR----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 411 l~eKyRP~sFddLVGQe~v~q~Lk~aL~~----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.....||++|+|+|||++++..|.-.|+. +...-++|||||||.||||+|+++|++++...
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~--------------- 80 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNL--------------- 80 (332)
T ss_pred hhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe---------------
Confidence 44568999999999999999988866654 33334689999999999999999999998542
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC--------------
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-------------- 552 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-------------- 552 (1152)
....+..-....++..++..+ ..+.|+||||||.+++.+.+.|...||++.
T Consensus 81 ---------k~tsGp~leK~gDlaaiLt~L------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv 145 (332)
T COG2255 81 ---------KITSGPALEKPGDLAAILTNL------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSI 145 (332)
T ss_pred ---------EecccccccChhhHHHHHhcC------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceE
Confidence 111111112344566666654 566899999999999999999999999822
Q ss_pred ----CCEEEEEEcCCCCcchHHHHccceE-EEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 036794 553 ----RRVVFILVSSSLDALPHIIISRCQK-FFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLE 627 (1152)
Q Consensus 553 ----~~VifILaTN~~dkL~~aL~SR~qv-I~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LE 627 (1152)
+...+|.+|+....+..+|+.||.+ .++.-++.+|+..++.+-+...++.+++++...||.++.|-.|-|..+|.
T Consensus 146 ~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 146 RLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred eccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHH
Confidence 4556899999999999999999984 77888999999999999999999999999999999999999999999998
Q ss_pred HHHHh-----CCCCCHHHHHHHHhc
Q 036794 628 QLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 628 kLsLl-----g~~IT~EdV~elVg~ 647 (1152)
+.--+ .+.|+.+.+.+++..
T Consensus 226 RVRDfa~V~~~~~I~~~ia~~aL~~ 250 (332)
T COG2255 226 RVRDFAQVKGDGDIDRDIADKALKM 250 (332)
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHH
Confidence 87443 345777766666543
No 85
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.82 E-value=3.3e-19 Score=211.78 Aligned_cols=230 Identities=19% Similarity=0.241 Sum_probs=181.3
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCC---------------------------------CcEEEEEcCCCc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKV---------------------------------GLLYVFYGPHGT 454 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri---------------------------------~~~yLL~GPpGT 454 (1152)
...|++||+|+.|.||+|.+.+-+.+..|++.+.. ...+|||||||.
T Consensus 258 ~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGl 337 (877)
T KOG1969|consen 258 DKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGL 337 (877)
T ss_pred cceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCC
Confidence 34999999999999999999888888888866210 127999999999
Q ss_pred hHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhC-C---CCCCceEEEE
Q 036794 455 GKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTS-R---PPSQYRIFVF 530 (1152)
Q Consensus 455 GKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~-P---~~a~~kVVII 530 (1152)
||||+|+++|+..++. ++|+++........+.+.++.+... . ..+++.++||
T Consensus 338 GKTTLAHViAkqaGYs------------------------VvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLVi 393 (877)
T KOG1969|consen 338 GKTTLAHVIAKQAGYS------------------------VVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVI 393 (877)
T ss_pred ChhHHHHHHHHhcCce------------------------EEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEE
Confidence 9999999999998865 7888887777777777777665422 2 2367889999
Q ss_pred eCCCCCCHHHHHHHHHHHhh------CCC---------------CEEEEEEcCCCCc-chHHHHccceEEEecCCChhHH
Q 036794 531 DDCDTLSPDSWSAISKVVDR------APR---------------RVVFILVSSSLDA-LPHIIISRCQKFFFPKMKDADI 588 (1152)
Q Consensus 531 DEID~Ls~eaqnaLLklLEe------pp~---------------~VifILaTN~~dk-L~~aL~SR~qvI~F~~p~~~EI 588 (1152)
||||.....+.+.|+.++.. .+. .-.||++||+... -...|+--++++.|.+++..-+
T Consensus 394 DEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~L 473 (877)
T KOG1969|consen 394 DEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRL 473 (877)
T ss_pred ecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHH
Confidence 99999999999999999883 111 1248999998751 2223777788999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC----CCHHHHHHHHhc--cchhhHHHHHHHHH
Q 036794 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR----ISVPLVQELVGL--ISDEKLVDLLDLAL 661 (1152)
Q Consensus 589 ~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~----IT~EdV~elVg~--v~ee~ifdLldAil 661 (1152)
+++|+.+|..+|+.++..+|..|++++.+|+|.++|.|+.++..+++ |..-++.+.... .....+|.+...++
T Consensus 474 v~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~i~~~~i~a~~~~~k~~~~slf~~w~ei~ 552 (877)
T KOG1969|consen 474 VERLNEICHRENMRADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSSISVKLICAKNVGAKSNSDSLFSWWKEIF 552 (877)
T ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchhhhhhhhhhcccccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999988765 566666554432 22334555544433
No 86
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.78 E-value=2.2e-18 Score=185.49 Aligned_cols=211 Identities=21% Similarity=0.264 Sum_probs=153.9
Q ss_pred hhhCCCCcCcccCcHHHHHHHHH---HHHh----CC-CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 413 QKYMPRTFRDLVGQNLVAQALSN---AVMR----RK-VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 413 eKyRP~sFddLVGQe~v~q~Lk~---aL~~----gr-i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
+....-+|+|+|||+++++.-.- .++. +. .|..+|||||||||||.+|+++|++.+.+.....
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vk--------- 183 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVK--------- 183 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEec---------
Confidence 34455689999999988865443 3332 22 2458999999999999999999998775532111
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH------------HHHHHHHHHHhhC-
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP------------DSWSAISKVVDRA- 551 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~------------eaqnaLLklLEep- 551 (1152)
... .++..-.-+..+|.++.+.+... ..+||||||+|.+.. +..|+||.-|+..
T Consensus 184 -------at~--liGehVGdgar~Ihely~rA~~~----aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~ 250 (368)
T COG1223 184 -------ATE--LIGEHVGDGARRIHELYERARKA----APCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK 250 (368)
T ss_pred -------hHH--HHHHHhhhHHHHHHHHHHHHHhc----CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc
Confidence 000 01111123456788888887644 348999999998743 3578999998873
Q ss_pred -CCCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Q 036794 552 -PRRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAEMTLEQ 628 (1152)
Q Consensus 552 -p~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ain~LEk 628 (1152)
...|++|++||+++.|++++++|+. .|.|..|+.+++..+|+..+++..+.++.+ +++++..+.| +-|++..-+-+
T Consensus 251 eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK 329 (368)
T COG1223 251 ENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLK 329 (368)
T ss_pred cCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHH
Confidence 4689999999999999999999999 599999999999999999999988888776 8888888776 66666544444
Q ss_pred HHHh------CCCCCHHHHHHHHh
Q 036794 629 LSLL------GQRISVPLVQELVG 646 (1152)
Q Consensus 629 LsLl------g~~IT~EdV~elVg 646 (1152)
.++. .+.|+.++++.++.
T Consensus 330 ~aLh~Ai~ed~e~v~~edie~al~ 353 (368)
T COG1223 330 TALHRAIAEDREKVEREDIEKALK 353 (368)
T ss_pred HHHHHHHHhchhhhhHHHHHHHHH
Confidence 3332 23466666666554
No 87
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.76 E-value=1.2e-17 Score=195.43 Aligned_cols=200 Identities=16% Similarity=0.129 Sum_probs=145.8
Q ss_pred CcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCC--------------CCCCCCCc
Q 036794 419 TFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQP--------------KPCGFCNS 483 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~--------------epcg~c~~ 483 (1152)
.+.++||++.+++.|...+.+ ......+||+|++||||+.+|++|++.-.....++. +.||+.+.
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekG 218 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKG 218 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhccccc
Confidence 578999999999999988876 455567999999999999999999997544322211 11222221
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-----------CC
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-----------AP 552 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-----------pp 552 (1152)
++.-......+.++ .++++++|||||..|+.+.|..||++|++ .+
T Consensus 219 AFTGA~~~r~G~fE------------------------~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~ 274 (464)
T COG2204 219 AFTGAITRRIGRFE------------------------QANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIK 274 (464)
T ss_pred CcCCcccccCccee------------------------EcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccc
Confidence 11111111111111 25678999999999999999999999997 34
Q ss_pred CCEEEEEEcCCC-------CcchHHHHccceEEEecCCChhHHH----H----HHHHHHHHcCC---CCCHHHHHHHHHh
Q 036794 553 RRVVFILVSSSL-------DALPHIIISRCQKFFFPKMKDADII----Y----TLQWIASKEGI---EIDKDALKLIASR 614 (1152)
Q Consensus 553 ~~VifILaTN~~-------dkL~~aL~SR~qvI~F~~p~~~EI~----e----iL~~iakkeGl---~Id~dALelLAe~ 614 (1152)
.+|+||.+||.. .++-+.|+.|+.++.+.-|+..+.. - ++++.+.+.|. .++++|++.|..|
T Consensus 275 vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y 354 (464)
T COG2204 275 VDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAY 354 (464)
T ss_pred eeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 689999999853 2588899999998776666654433 2 44555555544 5899999999999
Q ss_pred -cCCCHHHHHHHHHHHHHhC--CCCCHHHHH
Q 036794 615 -SDGSLRDAEMTLEQLSLLG--QRISVPLVQ 642 (1152)
Q Consensus 615 -s~GDLR~Ain~LEkLsLlg--~~IT~EdV~ 642 (1152)
|+||+|++.|.+++++.+. ..|+.+++.
T Consensus 355 ~WPGNVREL~N~ver~~il~~~~~i~~~~l~ 385 (464)
T COG2204 355 DWPGNVRELENVVERAVILSEGPEIEVEDLP 385 (464)
T ss_pred CCChHHHHHHHHHHHHHhcCCccccchhhcc
Confidence 9999999999999997773 358877755
No 88
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.75 E-value=1.3e-16 Score=171.53 Aligned_cols=199 Identities=15% Similarity=0.266 Sum_probs=149.4
Q ss_pred CCCCcCccc--CcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCcc
Q 036794 416 MPRTFRDLV--GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSR 493 (1152)
Q Consensus 416 RP~sFddLV--GQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~ 493 (1152)
+|.+|++++ +++.++..+.++.........++|+||+|||||++|+++++++.....
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~--------------------- 71 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGR--------------------- 71 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC---------------------
Confidence 345799988 356788888888775555567999999999999999999998643211
Q ss_pred ceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC--CCEEEEEEcCCCC---cch
Q 036794 494 NIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP--RRVVFILVSSSLD---ALP 568 (1152)
Q Consensus 494 dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp--~~VifILaTN~~d---kL~ 568 (1152)
.+..++.. .+...+ .+.....+|||||+|.++...+..|+.+++... ...++|++++.+. .+.
T Consensus 72 ~~~~i~~~------~~~~~~------~~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~ 139 (227)
T PRK08903 72 NARYLDAA------SPLLAF------DFDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLR 139 (227)
T ss_pred cEEEEehH------HhHHHH------hhcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCC
Confidence 12222211 111111 112345799999999999888889988887632 3334666665432 355
Q ss_pred HHHHccc---eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh----CCCCCHHHH
Q 036794 569 HIIISRC---QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL----GQRISVPLV 641 (1152)
Q Consensus 569 ~aL~SR~---qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl----g~~IT~EdV 641 (1152)
+.|.+|+ ..+.+++++.++....|...+.+.++.++++++++|+..|+||++.+.+.|+.+..+ ...||...+
T Consensus 140 ~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~~~~~i~~~~~ 219 (227)
T PRK08903 140 EDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLL 219 (227)
T ss_pred HHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 7788886 589999999999999999999999999999999999999999999999999997533 456999999
Q ss_pred HHHHhc
Q 036794 642 QELVGL 647 (1152)
Q Consensus 642 ~elVg~ 647 (1152)
+++++.
T Consensus 220 ~~~l~~ 225 (227)
T PRK08903 220 REMLAQ 225 (227)
T ss_pred HHHHhc
Confidence 999864
No 89
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.75 E-value=2.8e-17 Score=192.49 Aligned_cols=208 Identities=19% Similarity=0.222 Sum_probs=145.4
Q ss_pred hhhhhCCCCcCcccCcHHHHHHHHHHHH-hCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc-
Q 036794 411 LTQKYMPRTFRDLVGQNLVAQALSNAVM-RRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD- 488 (1152)
Q Consensus 411 l~eKyRP~sFddLVGQe~v~q~Lk~aL~-~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~- 488 (1152)
+..+| +|++|+|.+..+..+...++ ....+..+||.|++||||+.+|++|++.......++ ...+|.++.
T Consensus 238 ~~a~y---~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PF-----IaiNCaAiPe 309 (560)
T COG3829 238 LKAKY---TFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPF-----IAINCAAIPE 309 (560)
T ss_pred ccccc---chhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCe-----EEEecccCCH
Confidence 45566 59999999877766665554 467778899999999999999999998654332222 122333331
Q ss_pred -----------CCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-------
Q 036794 489 -----------RGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR------- 550 (1152)
Q Consensus 489 -----------~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe------- 550 (1152)
.|.+.+...-+..+ +++ .++++.||||||..|+...|.+||++|++
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~G---------lfE-------~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG 373 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPG---------LFE-------LANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVG 373 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCc---------cee-------eccCCeEEehhhccCCHHHHHHHHHHHhhceEEecC
Confidence 12211111100000 111 15678999999999999999999999998
Q ss_pred ----CCCCEEEEEEcCCC-------CcchHHHHccceEEEecCCChh----HHHHH----HHHHHHHcCC---CCCHHHH
Q 036794 551 ----APRRVVFILVSSSL-------DALPHIIISRCQKFFFPKMKDA----DIIYT----LQWIASKEGI---EIDKDAL 608 (1152)
Q Consensus 551 ----pp~~VifILaTN~~-------dkL~~aL~SR~qvI~F~~p~~~----EI~ei----L~~iakkeGl---~Id~dAL 608 (1152)
.+.++++|.|||.. ..+-+.|..|+.++.+.-|+.. ||... |.++.+..+. .++++++
T Consensus 374 ~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~ 453 (560)
T COG3829 374 GTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDAL 453 (560)
T ss_pred CCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHH
Confidence 45799999999953 2577889999998666555543 44433 3333344443 3899999
Q ss_pred HHHHHh-cCCCHHHHHHHHHHHHHh---CCCCCHHHHH
Q 036794 609 KLIASR-SDGSLRDAEMTLEQLSLL---GQRISVPLVQ 642 (1152)
Q Consensus 609 elLAe~-s~GDLR~Ain~LEkLsLl---g~~IT~EdV~ 642 (1152)
..|.+| |+||+|++.|+++++..+ .+.|+.+++.
T Consensus 454 ~~L~~y~WPGNVRELeNviER~v~~~~~~~~I~~~~lp 491 (560)
T COG3829 454 ALLLRYDWPGNVRELENVIERAVNLVESDGLIDADDLP 491 (560)
T ss_pred HHHHhCCCCchHHHHHHHHHHHHhccCCcceeehhhcc
Confidence 999999 999999999999999865 2347777665
No 90
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=7.8e-17 Score=180.61 Aligned_cols=207 Identities=18% Similarity=0.236 Sum_probs=153.5
Q ss_pred CCcCcccCcHHHHHHHHHHHHhC------------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMRR------------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~g------------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|+||-|-+..++.|++++.-. ..|.++|||||||||||.+|+|+|+..++.+....
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvv---------- 217 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVV---------- 217 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEec----------
Confidence 48899999999999999998642 45568999999999999999999999887642211
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhh----
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PDSWSAISKVVDR---- 550 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~eaqnaLLklLEe---- 550 (1152)
|+. ++ ..+-.-+..-++++|.-+... ...||||||||.+. .+.|..|+++|.+
T Consensus 218 ----gSE--lV--qKYiGEGaRlVRelF~lArek----aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF 285 (406)
T COG1222 218 ----GSE--LV--QKYIGEGARLVRELFELAREK----APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF 285 (406)
T ss_pred ----cHH--HH--HHHhccchHHHHHHHHHHhhc----CCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence 110 00 001112345677887776543 45899999999873 3568888888876
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHH
Q 036794 551 -APRRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-SLRDAEM 624 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-DLR~Ain 624 (1152)
+..++-+|+|||.++.|+|+|++-+. .|.|+.|+.+...++++-+..+..+ +++ -++.|+..++| +-.++.+
T Consensus 286 D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l--~~dvd~e~la~~~~g~sGAdlka 363 (406)
T COG1222 286 DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL--ADDVDLELLARLTEGFSGADLKA 363 (406)
T ss_pred CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC--ccCcCHHHHHHhcCCCchHHHHH
Confidence 66799999999999999999998655 5999999999999999988877554 333 36777777665 5556666
Q ss_pred HHHHHHHh---C--CCCCHHHHHHHHhcc
Q 036794 625 TLEQLSLL---G--QRISVPLVQELVGLI 648 (1152)
Q Consensus 625 ~LEkLsLl---g--~~IT~EdV~elVg~v 648 (1152)
++..+.++ . ..||.+|+.+++..+
T Consensus 364 ictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 364 ICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 66665444 2 348988888877654
No 91
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=1.4e-16 Score=193.89 Aligned_cols=268 Identities=15% Similarity=0.141 Sum_probs=168.3
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCC----cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCC
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVG----LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCN 482 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~----~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~ 482 (1152)
...+|++||+|++|+||+||++.+..|..++.....+ ..++|+||+|+|||++++++|+.++....++..|.
T Consensus 70 ~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv---- 145 (637)
T TIGR00602 70 GNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPT---- 145 (637)
T ss_pred ccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhh----
Confidence 3569999999999999999999999999998875432 36999999999999999999999886543321111
Q ss_pred ccccccCCCccceEEeC---CCCCCCHHHHHHHHHHHhhC--C----CCCCceEEEEeCCCCCCHH---HHHHHHH--HH
Q 036794 483 SCISHDRGKSRNIKEVG---PVGNFDFESILDLLDNMVTS--R----PPSQYRIFVFDDCDTLSPD---SWSAISK--VV 548 (1152)
Q Consensus 483 ~c~~i~~g~~~dviEId---aas~~~vdeIreLle~a~~~--P----~~a~~kVVIIDEID~Ls~e---aqnaLLk--lL 548 (1152)
.|..... .+..+..+. .......+.+..++..+... . ...+++||||||++.+... ++..++. +.
T Consensus 146 ~~~~~~~-~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~ 224 (637)
T TIGR00602 146 LPDFQKN-DHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYV 224 (637)
T ss_pred hhccccc-ccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhh
Confidence 1111100 000000000 00012345566666654311 0 1356789999999776432 3444444 33
Q ss_pred hhCCCCEEEEEEcCCC--------C-cc------hHHHHc--cceEEEecCCChhHHHHHHHHHHHHcCCC------C-C
Q 036794 549 DRAPRRVVFILVSSSL--------D-AL------PHIIIS--RCQKFFFPKMKDADIIYTLQWIASKEGIE------I-D 604 (1152)
Q Consensus 549 Eepp~~VifILaTN~~--------d-kL------~~aL~S--R~qvI~F~~p~~~EI~eiL~~iakkeGl~------I-d 604 (1152)
+. ..+.+|+++++. + .+ .++|++ |+.+|.|+++...++.+.|..+++.++.. + +
T Consensus 225 e~--~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~ 302 (637)
T TIGR00602 225 SI--GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPK 302 (637)
T ss_pred cC--CCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCC
Confidence 33 345566665521 1 12 367887 56679999999999999999999986532 2 5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---------CCCHHHHHHHHhccc--hhhHHHHHHHHHcCCHH-HHHHHH
Q 036794 605 KDALKLIASRSDGSLRDAEMTLEQLSLLGQ---------RISVPLVQELVGLIS--DEKLVDLLDLALSADTV-NTVKNL 672 (1152)
Q Consensus 605 ~dALelLAe~s~GDLR~Ain~LEkLsLlg~---------~IT~EdV~elVg~v~--ee~ifdLldAils~d~~-~ALk~L 672 (1152)
++++..|+..+.||+|.|++.|+.++.-++ .++..++........ ...--+.++++..++.. ..++.|
T Consensus 303 ~~~l~~I~~~s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~~~l~~~~~rd~sl~lfhal 382 (637)
T TIGR00602 303 KTSVELLCQGCSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNENQEIQALGGKDVSLFLFRAL 382 (637)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchhHHHHHhhccccchhHHHHHh
Confidence 689999999999999999999999866532 245454444332221 11123445555544443 334455
Q ss_pred HHHHHhCCC
Q 036794 673 RVIMETGVE 681 (1152)
Q Consensus 673 ~~LL~~G~d 681 (1152)
...+.+..+
T Consensus 383 gkily~Kr~ 391 (637)
T TIGR00602 383 GKILYCKRA 391 (637)
T ss_pred Chhhccccc
Confidence 555554443
No 92
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.72 E-value=1.3e-16 Score=175.88 Aligned_cols=187 Identities=18% Similarity=0.242 Sum_probs=136.5
Q ss_pred cCcccCcHHHHHHHHHHHHh----------C----CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 420 FRDLVGQNLVAQALSNAVMR----------R----KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~----------g----ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
+++++|.+.+++.|.+.+.. | .....+||+||||||||++|+++|+.+....... .+.
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~---~~~----- 76 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLS---KGH----- 76 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCccc---CCc-----
Confidence 57899999998887643221 1 1234689999999999999999999875332111 111
Q ss_pred cccCCCccceEEeCCCC------CCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC--------HHHHHHHHHHHhhC
Q 036794 486 SHDRGKSRNIKEVGPVG------NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS--------PDSWSAISKVVDRA 551 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas------~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls--------~eaqnaLLklLEep 551 (1152)
+++++... ......+.++++.+ .++||||||+|.|. .+.++.|++.+++.
T Consensus 77 ---------~v~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~ 140 (261)
T TIGR02881 77 ---------LIEVERADLVGEYIGHTAQKTREVIKKA-------LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN 140 (261)
T ss_pred ---------eEEecHHHhhhhhccchHHHHHHHHHhc-------cCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc
Confidence 11111100 00123445555543 24699999999975 35678999999998
Q ss_pred CCCEEEEEEcCCCC-----cchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHh----------c
Q 036794 552 PRRVVFILVSSSLD-----ALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASR----------S 615 (1152)
Q Consensus 552 p~~VifILaTN~~d-----kL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~----------s 615 (1152)
..++++|+++...+ .+.++|.+|+. .|.|++++.+++.++++.++...++.++++++.+|+.+ .
T Consensus 141 ~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~ 220 (261)
T TIGR02881 141 RNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSRE 220 (261)
T ss_pred CCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCC
Confidence 88888888764322 36788999995 69999999999999999999999999999999998654 3
Q ss_pred CCCHHHHHHHHHHHH
Q 036794 616 DGSLRDAEMTLEQLS 630 (1152)
Q Consensus 616 ~GDLR~Ain~LEkLs 630 (1152)
.||.|.+.|+++++.
T Consensus 221 ~gn~R~~~n~~e~a~ 235 (261)
T TIGR02881 221 FSNARYVRNIIEKAI 235 (261)
T ss_pred CchHHHHHHHHHHHH
Confidence 599999999999964
No 93
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.71 E-value=2.8e-16 Score=169.77 Aligned_cols=182 Identities=14% Similarity=0.111 Sum_probs=151.9
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCC-chHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCC-------
Q 036794 430 AQALSNAVMRRKVGLLYVFYGPHG-TGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPV------- 501 (1152)
Q Consensus 430 ~q~Lk~aL~~gri~~~yLL~GPpG-TGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaa------- 501 (1152)
+..|.+.++.++.+|+|||.|..+ ++|..++..+++.+.|.. +..+.++|+..+.+.
T Consensus 2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~---------------i~~~~HPD~~~I~pe~~~~~~~ 66 (263)
T PRK06581 2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNS---------------IPLENNPDYHFIARETSATSNA 66 (263)
T ss_pred hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccC---------------cccCCCCCEEEEeccccccccC
Confidence 467899999999999999999998 999999999999988752 345678888888754
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEec
Q 036794 502 GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFP 581 (1152)
Q Consensus 502 s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~ 581 (1152)
...+++++|++.+.+...|..++++|+||+++|.|+.++.|+||++|||||.+++||++|+++..+++||+|||+.+.|.
T Consensus 67 ~~I~IdqIReL~~~l~~~p~~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~ 146 (263)
T PRK06581 67 KNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVR 146 (263)
T ss_pred CcccHHHHHHHHHHHhhCcccCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 036794 582 KMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL 629 (1152)
Q Consensus 582 ~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkL 629 (1152)
.+.+....++....+.-. .+..-+++|.+...-|..+.....+.+
T Consensus 147 ~p~~~~~~e~~~~~~~p~---~~~~~l~~i~~~~~~d~~~w~~~~~~~ 191 (263)
T PRK06581 147 SSILHAYNELYSQFIQPI---ADNKTLDFINRFTTKDRELWLDFIDNL 191 (263)
T ss_pred CCCHHHHHHHHHHhcccc---cccHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 998877776665443321 344457777776555555555544444
No 94
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.1e-16 Score=184.89 Aligned_cols=204 Identities=21% Similarity=0.208 Sum_probs=153.4
Q ss_pred CCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 417 PRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 417 P~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
-.+|+|+.|.+++++.|.+.+.. |++|.++||+||||||||.+||++|.+.+.+ |.+|
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP-------FF~~---- 368 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP-------FFYA---- 368 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC-------eEec----
Confidence 45799999999999999987754 7889999999999999999999999887644 3332
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhh--CC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKVVDR--AP 552 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLklLEe--pp 552 (1152)
.|...+-..+ ..+...+|+++..+.... +.||||||+|.... ...|.||--|+. ..
T Consensus 369 ---sGSEFdEm~V----GvGArRVRdLF~aAk~~A----PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qN 437 (752)
T KOG0734|consen 369 ---SGSEFDEMFV----GVGARRVRDLFAAAKARA----PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQN 437 (752)
T ss_pred ---cccchhhhhh----cccHHHHHHHHHHHHhcC----CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcC
Confidence 2333222222 356789999999986543 38999999998732 234555555554 45
Q ss_pred CCEEEEEEcCCCCcchHHHHccc--e-EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHH
Q 036794 553 RRVVFILVSSSLDALPHIIISRC--Q-KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASRSDG-SLRDAEMTLE 627 (1152)
Q Consensus 553 ~~VifILaTN~~dkL~~aL~SR~--q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~s~G-DLR~Ain~LE 627 (1152)
..++||.+||.++.|+++|.+.+ . .|.++.|+..-..++|..++.+- .+++++ +..||+-+.| +-.++.|++.
T Consensus 438 eGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki--~~~~~VD~~iiARGT~GFsGAdLaNlVN 515 (752)
T KOG0734|consen 438 EGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI--PLDEDVDPKIIARGTPGFSGADLANLVN 515 (752)
T ss_pred CceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC--CcccCCCHhHhccCCCCCchHHHHHHHH
Confidence 68999999999999999998854 4 48899999999999999988753 333222 4556777776 7889999999
Q ss_pred HHHHhC-----CCCCHHHHHHH
Q 036794 628 QLSLLG-----QRISVPLVQEL 644 (1152)
Q Consensus 628 kLsLlg-----~~IT~EdV~el 644 (1152)
++++++ ..+|+.+++..
T Consensus 516 qAAlkAa~dga~~VtM~~LE~a 537 (752)
T KOG0734|consen 516 QAALKAAVDGAEMVTMKHLEFA 537 (752)
T ss_pred HHHHHHHhcCcccccHHHHhhh
Confidence 988772 34777776644
No 95
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.71 E-value=7.4e-17 Score=186.86 Aligned_cols=198 Identities=18% Similarity=0.213 Sum_probs=146.5
Q ss_pred CcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHc----------ccCCCCC----CCCCCCCc
Q 036794 419 TFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALN----------CQSLEQP----KPCGFCNS 483 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~----------~~~~e~~----epcg~c~~ 483 (1152)
.+.+|||++.++..+.+.|.. .+...+|||+|++||||+.+|++|++... |...+.+ +.||+.+.
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKG 300 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKG 300 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhccccc
Confidence 478999999999888887765 56667899999999999999999998643 3332221 33333333
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-----------CC
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-----------AP 552 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-----------pp 552 (1152)
.+.-..+..++-||+ ++++.+|||||+.|+...|.+||++|++ ..
T Consensus 301 AFTGA~~~r~GrFEl------------------------AdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ik 356 (550)
T COG3604 301 AFTGAINTRRGRFEL------------------------ADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIK 356 (550)
T ss_pred ccccchhccCcceee------------------------cCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeE
Confidence 333222222222222 5678999999999999999999999998 34
Q ss_pred CCEEEEEEcCCC-------CcchHHHHccceEEEecCCChhH----HH----HHHHHHHHHcCC---CCCHHHHHHHHHh
Q 036794 553 RRVVFILVSSSL-------DALPHIIISRCQKFFFPKMKDAD----II----YTLQWIASKEGI---EIDKDALKLIASR 614 (1152)
Q Consensus 553 ~~VifILaTN~~-------dkL~~aL~SR~qvI~F~~p~~~E----I~----eiL~~iakkeGl---~Id~dALelLAe~ 614 (1152)
.+|++|++||.. .++-..|+.|+.+|.+.-|+..+ +. .++++...+.|. .++++|++.|..|
T Consensus 357 VDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y 436 (550)
T COG3604 357 VDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSY 436 (550)
T ss_pred EEEEEEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcC
Confidence 689999999952 36888899999997766665543 32 244555555555 5899999999999
Q ss_pred -cCCCHHHHHHHHHHHHHhC-CCCCHHH
Q 036794 615 -SDGSLRDAEMTLEQLSLLG-QRISVPL 640 (1152)
Q Consensus 615 -s~GDLR~Ain~LEkLsLlg-~~IT~Ed 640 (1152)
|+||+|++.|.++++++.+ ..++.++
T Consensus 437 ~wPGNVRELen~veRavlla~~~~~~~d 464 (550)
T COG3604 437 EWPGNVRELENVVERAVLLAGRLTRRGD 464 (550)
T ss_pred CCCCcHHHHHHHHHHHHHHhcccCCCcc
Confidence 9999999999999998765 3455444
No 96
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.70 E-value=9.4e-16 Score=166.98 Aligned_cols=198 Identities=20% Similarity=0.283 Sum_probs=142.9
Q ss_pred CcCccc-C-cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceE
Q 036794 419 TFRDLV-G-QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIK 496 (1152)
Q Consensus 419 sFddLV-G-Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dvi 496 (1152)
+|++++ | +..++..+..+...... ..++||||+|+|||++++++++++..... ...+.
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~-~~l~l~Gp~G~GKThLl~a~~~~~~~~~~-------------------~v~y~ 79 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHS-GYIYLWSREGAGRSHLLHAACAELSQRGR-------------------AVGYV 79 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCC-CeEEEECCCCCCHHHHHHHHHHHHHhCCC-------------------eEEEE
Confidence 689877 4 66788888887765443 46899999999999999999998763210 00011
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhC--CCCEEEEEEcCCCC----cch
Q 036794 497 EVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDRA--PRRVVFILVSSSLD----ALP 568 (1152)
Q Consensus 497 EIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEep--p~~VifILaTN~~d----kL~ 568 (1152)
.++... ....++++.+ ....+|||||++.+.. ..+..|+.+++.. .....+|++++.+. .+.
T Consensus 80 ~~~~~~----~~~~~~~~~~------~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~ 149 (235)
T PRK08084 80 PLDKRA----WFVPEVLEGM------EQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGL 149 (235)
T ss_pred EHHHHh----hhhHHHHHHh------hhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCccc
Confidence 111100 0112233322 1236999999999864 3344555555442 23456777777542 356
Q ss_pred HHHHccc---eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH---h-CCCCCHHHH
Q 036794 569 HIIISRC---QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL---L-GQRISVPLV 641 (1152)
Q Consensus 569 ~aL~SR~---qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsL---l-g~~IT~EdV 641 (1152)
+.|+||+ .++.+.+|+.+++..+|++.+...|+.++++++++|+.+++||+|.+++.|+++.. . +..||.+.+
T Consensus 150 ~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~ 229 (235)
T PRK08084 150 PDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFV 229 (235)
T ss_pred HHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 8899999 68999999999999999998998999999999999999999999999999999742 2 457999999
Q ss_pred HHHHh
Q 036794 642 QELVG 646 (1152)
Q Consensus 642 ~elVg 646 (1152)
+++++
T Consensus 230 k~~l~ 234 (235)
T PRK08084 230 KEILK 234 (235)
T ss_pred HHHHc
Confidence 98874
No 97
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.69 E-value=7.7e-16 Score=188.35 Aligned_cols=239 Identities=21% Similarity=0.262 Sum_probs=160.6
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC---CCCCCCCCC
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE---QPKPCGFCN 482 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e---~~epcg~c~ 482 (1152)
....++.+.|||++|++++||+.++..+...+.... +..++|+||+|||||++|+++++........ ...++ .+.
T Consensus 139 ~~~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~-~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f-v~i 216 (615)
T TIGR02903 139 KLHKSAQSLLRPRAFSEIVGQERAIKALLAKVASPF-PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF-VEV 216 (615)
T ss_pred HhhhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCC-CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe-EEE
Confidence 356778888999999999999999998887776544 4468999999999999999998876432111 00111 111
Q ss_pred ccccccCCCccce--EEeCCCCCCCHHHHHHHHHHHh------hCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC---
Q 036794 483 SCISHDRGKSRNI--KEVGPVGNFDFESILDLLDNMV------TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA--- 551 (1152)
Q Consensus 483 ~c~~i~~g~~~dv--iEIdaas~~~vdeIreLle~a~------~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep--- 551 (1152)
.|..+... ...+ ..++.............+.... ........++|||||++.|+...++.|+++|++.
T Consensus 217 ~~~~l~~d-~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~ 295 (615)
T TIGR02903 217 DGTTLRWD-PREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVE 295 (615)
T ss_pred echhccCC-HHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEE
Confidence 22221100 0000 0000000000000111111110 0011234579999999999999999999999862
Q ss_pred -------------------------CCCEEEEEEcC-CCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCH
Q 036794 552 -------------------------PRRVVFILVSS-SLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDK 605 (1152)
Q Consensus 552 -------------------------p~~VifILaTN-~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~ 605 (1152)
+.++++|++|+ ++..++++|++||..+.|++++.+++..+++..+.+.++.+++
T Consensus 296 ~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~ 375 (615)
T TIGR02903 296 FSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAA 375 (615)
T ss_pred eecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 12356666554 5677899999999999999999999999999999988989999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhC-----------C--CCCHHHHHHHHhcc
Q 036794 606 DALKLIASRSDGSLRDAEMTLEQLSLLG-----------Q--RISVPLVQELVGLI 648 (1152)
Q Consensus 606 dALelLAe~s~GDLR~Ain~LEkLsLlg-----------~--~IT~EdV~elVg~v 648 (1152)
++++.|+.++. +.|.++|.|+.+..+. + .|+.++|.++++..
T Consensus 376 eal~~L~~ys~-~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 376 GVEELIARYTI-EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 99999999853 6699999998763220 1 37788888887764
No 98
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.68 E-value=1e-15 Score=163.48 Aligned_cols=198 Identities=16% Similarity=0.263 Sum_probs=142.3
Q ss_pred CCcCcccC--cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccce
Q 036794 418 RTFRDLVG--QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNI 495 (1152)
Q Consensus 418 ~sFddLVG--Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dv 495 (1152)
.+|+++++ ++.++..++.++.. ..+..++|+||+|||||++|+++++.+..... + +
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~----~-----------------~ 69 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG-KGDRFLYLWGESGSGKSHLLQAACAAAEERGK----S-----------------A 69 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc-CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCC----c-----------------E
Confidence 46888883 66788999988764 44557899999999999999999998753211 0 1
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHH--HHHHHHHHhhC-CCCEEEEEEcCCC-Cc--ch-
Q 036794 496 KEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDS--WSAISKVVDRA-PRRVVFILVSSSL-DA--LP- 568 (1152)
Q Consensus 496 iEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~ea--qnaLLklLEep-p~~VifILaTN~~-dk--L~- 568 (1152)
..++..... ....++++.+ ....+|||||+|.+.... ++.|..+++.. .....+|++++.. .. +.
T Consensus 70 ~~i~~~~~~--~~~~~~~~~~------~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~ 141 (226)
T TIGR03420 70 IYLPLAELA--QADPEVLEGL------EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRL 141 (226)
T ss_pred EEEeHHHHH--HhHHHHHhhc------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCccc
Confidence 222110000 0112222222 234699999999998644 77787777652 1234666776632 22 22
Q ss_pred HHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH---h-CCCCCHHHH
Q 036794 569 HIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL---L-GQRISVPLV 641 (1152)
Q Consensus 569 ~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsL---l-g~~IT~EdV 641 (1152)
+.|.+|+. .+.+++++.+++..+++.++.+.++.++++++++|+..|+||+|++.+.|+++.. . ++.||.+.|
T Consensus 142 ~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~~~i~~~~~ 221 (226)
T TIGR03420 142 PDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFV 221 (226)
T ss_pred HHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 67888864 7999999999999999998888999999999999999999999999999988743 2 457999999
Q ss_pred HHHH
Q 036794 642 QELV 645 (1152)
Q Consensus 642 ~elV 645 (1152)
.+++
T Consensus 222 ~~~~ 225 (226)
T TIGR03420 222 KEVL 225 (226)
T ss_pred HHHh
Confidence 8875
No 99
>PRK08727 hypothetical protein; Validated
Probab=99.68 E-value=2.4e-15 Score=163.55 Aligned_cols=199 Identities=17% Similarity=0.273 Sum_probs=142.6
Q ss_pred CcCcccC-cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEE
Q 036794 419 TFRDLVG-QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKE 497 (1152)
Q Consensus 419 sFddLVG-Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviE 497 (1152)
+|+++++ .+..+..+.... .+.....++|+||+|||||+++++++.++..... .+..
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~---------------------~~~y 74 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALA-AGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGR---------------------SSAY 74 (233)
T ss_pred ChhhccCCcHHHHHHHHHHH-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC---------------------cEEE
Confidence 7999775 444555444433 2444456899999999999999999988643210 0112
Q ss_pred eCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhC-CCCEEEEEEcCCC-C---cchHH
Q 036794 498 VGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS--PDSWSAISKVVDRA-PRRVVFILVSSSL-D---ALPHI 570 (1152)
Q Consensus 498 Idaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls--~eaqnaLLklLEep-p~~VifILaTN~~-d---kL~~a 570 (1152)
+.... ....+.+.++.. ....+|+|||++.+. ...+..|+.+++.. .....+|++++.+ . .+.+.
T Consensus 75 ~~~~~--~~~~~~~~~~~l------~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 75 LPLQA--AAGRLRDALEAL------EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred EeHHH--hhhhHHHHHHHH------hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 21100 011233344443 234699999999986 34455777777652 2345577777753 3 35688
Q ss_pred HHcc---ceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH---h-CCCCCHHHHHH
Q 036794 571 IISR---CQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL---L-GQRISVPLVQE 643 (1152)
Q Consensus 571 L~SR---~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsL---l-g~~IT~EdV~e 643 (1152)
|.|| |..+.|++|+.+++..+|+.++...++.++++++++|+++++||+|.+++.|+++.. . +..||.+.+++
T Consensus 147 L~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~~it~~~~~~ 226 (233)
T PRK08727 147 LRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRVTVPFLRR 226 (233)
T ss_pred HHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 9999 778999999999999999999999999999999999999999999999999998742 2 45699999998
Q ss_pred HHhc
Q 036794 644 LVGL 647 (1152)
Q Consensus 644 lVg~ 647 (1152)
++..
T Consensus 227 ~l~~ 230 (233)
T PRK08727 227 VLEE 230 (233)
T ss_pred HHhh
Confidence 8754
No 100
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.68 E-value=7e-15 Score=168.28 Aligned_cols=234 Identities=20% Similarity=0.227 Sum_probs=150.7
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHh---CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCC-CCcc
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMR---RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF-CNSC 484 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~---gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~-c~~c 484 (1152)
..|...|.|. +|+|++..++.|..++.. +..+..++|+||||||||++++.+++.+.........++.. ..+|
T Consensus 6 ~~l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 6 DLLEPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred hhCCCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 3566789884 789999988888877764 55556789999999999999999999875432111111111 1112
Q ss_pred ccccCCC------ccceE--EeC-CCCCCCHHHH-HHHHHHHhhCCCCCCceEEEEeCCCCCCHH---HHHHHHHH--Hh
Q 036794 485 ISHDRGK------SRNIK--EVG-PVGNFDFESI-LDLLDNMVTSRPPSQYRIFVFDDCDTLSPD---SWSAISKV--VD 549 (1152)
Q Consensus 485 ~~i~~g~------~~dvi--EId-aas~~~vdeI-reLle~a~~~P~~a~~kVVIIDEID~Ls~e---aqnaLLkl--LE 549 (1152)
....... ...+. ... +.......++ ..+++.+. ......||||||+|.+... ....|+++ ..
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~ 159 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELN---ERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNG 159 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHH---hcCCeEEEEECchhhhccCCcHHHHhHhcccccc
Confidence 1111000 00000 000 0111122222 22333322 1244578999999999532 33444444 22
Q ss_pred hC-CCCEEEEEEcCCCC---cchHHHHccce--EEEecCCChhHHHHHHHHHHHH--cCCCCCHHHHHHHHHh---cCCC
Q 036794 550 RA-PRRVVFILVSSSLD---ALPHIIISRCQ--KFFFPKMKDADIIYTLQWIASK--EGIEIDKDALKLIASR---SDGS 618 (1152)
Q Consensus 550 ep-p~~VifILaTN~~d---kL~~aL~SR~q--vI~F~~p~~~EI~eiL~~iakk--eGl~Id~dALelLAe~---s~GD 618 (1152)
+. ..++.+|+++|.++ .+.+.+.+|+. .+.|++++.+++.++|..+++. .+..++++++++++.. +.||
T Consensus 160 ~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 239 (365)
T TIGR02928 160 DLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGD 239 (365)
T ss_pred CCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCC
Confidence 22 36789999999875 46777888884 6999999999999999998863 2334889988876655 5799
Q ss_pred HHHHHHHHHHHHHhC-----CCCCHHHHHHHHhcc
Q 036794 619 LRDAEMTLEQLSLLG-----QRISVPLVQELVGLI 648 (1152)
Q Consensus 619 LR~Ain~LEkLsLlg-----~~IT~EdV~elVg~v 648 (1152)
+|.++++|+.++..+ +.||.++|.+++...
T Consensus 240 ~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 240 ARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 999999999976542 359999999887765
No 101
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.67 E-value=1e-15 Score=171.28 Aligned_cols=194 Identities=16% Similarity=0.172 Sum_probs=139.5
Q ss_pred CcccCcHHHHHHHHHHHHh----------C----CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 421 RDLVGQNLVAQALSNAVMR----------R----KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~----------g----ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.+++|.+.+++.|.+.+.. | .....+||+||||||||++|+++|+.+.........++.++. |..
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~-~~~ 100 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT-RDD 100 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec-HHH
Confidence 4699999998887664321 1 123469999999999999999999988643221111111111 100
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCC---------CHHHHHHHHHHHhhCCCCEEE
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTL---------SPDSWSAISKVVDRAPRRVVF 557 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~L---------s~eaqnaLLklLEepp~~Vif 557 (1152)
+.. .........+.++++.+ .++||||||++.| ..+.++.|+++|++...++++
T Consensus 101 --------l~~--~~~g~~~~~~~~~~~~a-------~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~v 163 (284)
T TIGR02880 101 --------LVG--QYIGHTAPKTKEILKRA-------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVV 163 (284)
T ss_pred --------HhH--hhcccchHHHHHHHHHc-------cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEE
Confidence 000 00001123445555553 3479999999987 355788999999998888999
Q ss_pred EEEcCCC--C---cchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHh--------cCCCHHHHH
Q 036794 558 ILVSSSL--D---ALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASR--------SDGSLRDAE 623 (1152)
Q Consensus 558 ILaTN~~--d---kL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~--------s~GDLR~Ai 623 (1152)
|++++.. + .+.++|.+|+. .|.|++++.+++..++...+++.+..+++++++.+..+ |.||.|.+.
T Consensus 164 I~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lr 243 (284)
T TIGR02880 164 ILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIR 243 (284)
T ss_pred EEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 8887643 2 24688999997 69999999999999999999999999999999998776 789999999
Q ss_pred HHHHHHHHh
Q 036794 624 MTLEQLSLL 632 (1152)
Q Consensus 624 n~LEkLsLl 632 (1152)
|.++++...
T Consensus 244 n~ve~~~~~ 252 (284)
T TIGR02880 244 NAIDRARLR 252 (284)
T ss_pred HHHHHHHHH
Confidence 999998644
No 102
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.67 E-value=3.1e-15 Score=182.36 Aligned_cols=236 Identities=17% Similarity=0.190 Sum_probs=155.5
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHh----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCC-CC-CC
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMR----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKP-CG-FC 481 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~ep-cg-~c 481 (1152)
...|...|.| +.|.|.+..++.|...|.. .....+++|+|+||||||++++.+.++|.........+ |. ..
T Consensus 745 ~rvL~~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVY 821 (1164)
T PTZ00112 745 IRMMQLDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFE 821 (1164)
T ss_pred HHHcCcccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEE
Confidence 4455566877 6788988777666655543 33334567999999999999999998875322111111 11 12
Q ss_pred CccccccCCCc------cceEEeCCCCC-CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh---C
Q 036794 482 NSCISHDRGKS------RNIKEVGPVGN-FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR---A 551 (1152)
Q Consensus 482 ~~c~~i~~g~~------~dviEIdaas~-~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe---p 551 (1152)
.+|..+..... ..+....+... ...+.+..++..+... .....||||||||.|....+..|+.+++. .
T Consensus 822 INCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~--~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s 899 (1164)
T PTZ00112 822 INGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKD--NRNVSILIIDEIDYLITKTQKVLFTLFDWPTKI 899 (1164)
T ss_pred EeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcc--cccceEEEeehHhhhCccHHHHHHHHHHHhhcc
Confidence 23332211100 00000011111 1122333344433111 12345899999999987777777777764 3
Q ss_pred CCCEEEEEEcCCC---CcchHHHHccceE--EEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHH---hcCCCHHHHH
Q 036794 552 PRRVVFILVSSSL---DALPHIIISRCQK--FFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIAS---RSDGSLRDAE 623 (1152)
Q Consensus 552 p~~VifILaTN~~---dkL~~aL~SR~qv--I~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe---~s~GDLR~Ai 623 (1152)
...++||+++|.. +.+.+.+.+|+.. +.|+|++.+++.++|..++......++++|++++|+ ...||+|.|+
T Consensus 900 ~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKAL 979 (1164)
T PTZ00112 900 NSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKAL 979 (1164)
T ss_pred CCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHH
Confidence 4578899999864 3567788998874 899999999999999999986545699999999998 5679999999
Q ss_pred HHHHHHHHh--CCCCCHHHHHHHHhcc
Q 036794 624 MTLEQLSLL--GQRISVPLVQELVGLI 648 (1152)
Q Consensus 624 n~LEkLsLl--g~~IT~EdV~elVg~v 648 (1152)
++|..++.. +..|+.++|.+++...
T Consensus 980 DILRrAgEikegskVT~eHVrkAleei 1006 (1164)
T PTZ00112 980 QICRKAFENKRGQKIVPRDITEATNQL 1006 (1164)
T ss_pred HHHHHHHhhcCCCccCHHHHHHHHHHH
Confidence 999998765 3358888888777544
No 103
>PRK06893 DNA replication initiation factor; Validated
Probab=99.67 E-value=2e-15 Score=163.80 Aligned_cols=200 Identities=17% Similarity=0.272 Sum_probs=138.0
Q ss_pred CCCcCcccCcHH--HHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccc
Q 036794 417 PRTFRDLVGQNL--VAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRN 494 (1152)
Q Consensus 417 P~sFddLVGQe~--v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~d 494 (1152)
+.+|++++|++. +...+...... ...+.++||||+|||||++++++++++....... -
T Consensus 12 ~~~fd~f~~~~~~~~~~~~~~~~~~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~-------------------~ 71 (229)
T PRK06893 12 DETLDNFYADNNLLLLDSLRKNFID-LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTA-------------------I 71 (229)
T ss_pred cccccccccCChHHHHHHHHHHhhc-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCe-------------------E
Confidence 458999997553 23333333332 2334578999999999999999999875331100 0
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhCC--CCEEEEEEcCC-CCc---
Q 036794 495 IKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDRAP--RRVVFILVSSS-LDA--- 566 (1152)
Q Consensus 495 viEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEepp--~~VifILaTN~-~dk--- 566 (1152)
++.+...... ..++++.+ .+..+|+|||++.+.. ..+..|+.+++... ...++|++++. +..
T Consensus 72 y~~~~~~~~~----~~~~~~~~------~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~ 141 (229)
T PRK06893 72 YIPLSKSQYF----SPAVLENL------EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSI 141 (229)
T ss_pred EeeHHHhhhh----hHHHHhhc------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccc
Confidence 1111100000 11223322 3457999999998753 33446777666522 23445565554 332
Q ss_pred chHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH---h-CCCCCHH
Q 036794 567 LPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL---L-GQRISVP 639 (1152)
Q Consensus 567 L~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsL---l-g~~IT~E 639 (1152)
..+.|.+|+. .+.+++|+.+++..+|++.+...++.++++++++|+.+++||+|.+.+.|+++.. . +..||.+
T Consensus 142 ~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~ 221 (229)
T PRK06893 142 KLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIP 221 (229)
T ss_pred cchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 3478999987 7999999999999999999999999999999999999999999999999998742 2 3469999
Q ss_pred HHHHHHh
Q 036794 640 LVQELVG 646 (1152)
Q Consensus 640 dV~elVg 646 (1152)
.|+++++
T Consensus 222 ~v~~~L~ 228 (229)
T PRK06893 222 FVKEILG 228 (229)
T ss_pred HHHHHhc
Confidence 9998875
No 104
>CHL00181 cbbX CbbX; Provisional
Probab=99.66 E-value=1.3e-15 Score=170.75 Aligned_cols=189 Identities=17% Similarity=0.189 Sum_probs=137.1
Q ss_pred cCcccCcHHHHHHHHHHHHh----------C----CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 420 FRDLVGQNLVAQALSNAVMR----------R----KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~----------g----ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
+.+++|.+.+++.|.+.+.. | ..+..+||+||||||||++|+++|+.+.........+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~-------- 93 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGH-------- 93 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCc--------
Confidence 45899999988877655321 1 2344689999999999999999999875331111101
Q ss_pred cccCCCccceEEeCCCC----CC--CHHHHHHHHHHHhhCCCCCCceEEEEeCCCCC---------CHHHHHHHHHHHhh
Q 036794 486 SHDRGKSRNIKEVGPVG----NF--DFESILDLLDNMVTSRPPSQYRIFVFDDCDTL---------SPDSWSAISKVVDR 550 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas----~~--~vdeIreLle~a~~~P~~a~~kVVIIDEID~L---------s~eaqnaLLklLEe 550 (1152)
++++.... .. ....+..+++.+ .++||||||++.+ ..++++.|++.|++
T Consensus 94 ---------~~~v~~~~l~~~~~g~~~~~~~~~l~~a-------~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~ 157 (287)
T CHL00181 94 ---------LLTVTRDDLVGQYIGHTAPKTKEVLKKA-------MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMEN 157 (287)
T ss_pred ---------eEEecHHHHHHHHhccchHHHHHHHHHc-------cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhc
Confidence 22222100 00 112234444442 3479999999986 45678899999999
Q ss_pred CCCCEEEEEEcCCC--C---cchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHh--------cC
Q 036794 551 APRRVVFILVSSSL--D---ALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASR--------SD 616 (1152)
Q Consensus 551 pp~~VifILaTN~~--d---kL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~--------s~ 616 (1152)
...+++||++++.. + .+.|.|.+||. .|.|++++.+++..++...+++.+..+++++...+..+ +.
T Consensus 158 ~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~ 237 (287)
T CHL00181 158 QRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLF 237 (287)
T ss_pred CCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCC
Confidence 88889888887632 2 23478999998 69999999999999999999999999999988777764 55
Q ss_pred CCHHHHHHHHHHHHHh
Q 036794 617 GSLRDAEMTLEQLSLL 632 (1152)
Q Consensus 617 GDLR~Ain~LEkLsLl 632 (1152)
||.|.+.+.++++...
T Consensus 238 GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 238 ANARSVRNALDRARMR 253 (287)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9999999999987543
No 105
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=4.7e-15 Score=176.26 Aligned_cols=193 Identities=21% Similarity=0.258 Sum_probs=145.4
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHh-----------C-CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMR-----------R-KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~-----------g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
...+|+||-|+++++..|+.++.. | ..+.++|||||||||||++|++||++..+.+....-
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkg------- 501 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKG------- 501 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccC-------
Confidence 345899999999999999988754 3 556799999999999999999999998876532210
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH-----------HHHHHHHHHhh--
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD-----------SWSAISKVVDR-- 550 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e-----------aqnaLLklLEe-- 550 (1152)
++++. ..-.-+-..++++|..++..+. .|||+||+|.+..+ ..+.||.-|+.
T Consensus 502 ---------pEL~s--k~vGeSEr~ir~iF~kAR~~aP----~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e 566 (693)
T KOG0730|consen 502 ---------PELFS--KYVGESERAIREVFRKARQVAP----CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE 566 (693)
T ss_pred ---------HHHHH--HhcCchHHHHHHHHHHHhhcCC----eEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc
Confidence 00110 1111234568999998876533 89999999988432 35566666665
Q ss_pred CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHH
Q 036794 551 APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-SLRDAEMT 625 (1152)
Q Consensus 551 pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-DLR~Ain~ 625 (1152)
...+|++|.+||.++.|+++|++ |+. .|.+++|+.+...++|+..+++ +.++++ .++.|++.++| +-+++.++
T Consensus 567 ~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~La~~T~g~SGAel~~l 644 (693)
T KOG0730|consen 567 ALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEELAQATEGYSGAEIVAV 644 (693)
T ss_pred ccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHHHHHhccCChHHHHHH
Confidence 34689999999999999999999 676 5899999999999999987765 456666 68889998766 66677777
Q ss_pred HHHHHHh
Q 036794 626 LEQLSLL 632 (1152)
Q Consensus 626 LEkLsLl 632 (1152)
++.++.+
T Consensus 645 Cq~A~~~ 651 (693)
T KOG0730|consen 645 CQEAALL 651 (693)
T ss_pred HHHHHHH
Confidence 7776554
No 106
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.64 E-value=6.7e-15 Score=176.27 Aligned_cols=214 Identities=20% Similarity=0.215 Sum_probs=149.9
Q ss_pred hhhhCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCC
Q 036794 412 TQKYMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF 480 (1152)
Q Consensus 412 ~eKyRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~ 480 (1152)
.+.....+|+||+|++.++..|..++.. ...+.++|||||||||||++|+++|.+++......
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i------ 119 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI------ 119 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeec------
Confidence 3444456899999999998888776641 45566899999999999999999999876542111
Q ss_pred CCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHH
Q 036794 481 CNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISK 546 (1152)
Q Consensus 481 c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLk 546 (1152)
.+..+ .. .....+...++++++.+... .+.||||||+|.+.. ...+.|+.
T Consensus 120 --~~~~~--------~~--~~~g~~~~~l~~~f~~a~~~----~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~ 183 (495)
T TIGR01241 120 --SGSDF--------VE--MFVGVGASRVRDLFEQAKKN----APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLV 183 (495)
T ss_pred --cHHHH--------HH--HHhcccHHHHHHHHHHHHhc----CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHh
Confidence 00000 00 00112345677888776432 346999999998742 23455666
Q ss_pred HHhhC--CCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHH
Q 036794 547 VVDRA--PRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLR 620 (1152)
Q Consensus 547 lLEep--p~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR 620 (1152)
.|+.. ...++||++||.++.++++|++ |+. .+.|+.|+.+++.++++..+....+. ++..+..++..+.| +.+
T Consensus 184 ~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sga 262 (495)
T TIGR01241 184 EMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGA 262 (495)
T ss_pred hhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHH
Confidence 66542 3468999999999999999987 555 59999999999999999888765443 33457788888776 667
Q ss_pred HHHHHHHHHHHh----C-CCCCHHHHHHHHhcc
Q 036794 621 DAEMTLEQLSLL----G-QRISVPLVQELVGLI 648 (1152)
Q Consensus 621 ~Ain~LEkLsLl----g-~~IT~EdV~elVg~v 648 (1152)
++.+++..+++. + ..|+.+++.+++...
T Consensus 263 dl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 263 DLANLLNEAALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 777777765443 2 349999998887643
No 107
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.63 E-value=3.6e-14 Score=164.26 Aligned_cols=233 Identities=21% Similarity=0.294 Sum_probs=151.6
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHh---CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMR---RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~---gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
..++...|.| +.++|.+..++.|...+.. +..+..++|+||||||||++++.+++.+........ + ...+|
T Consensus 20 ~~~l~~~~~P---~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~--~-v~in~ 93 (394)
T PRK00411 20 EEVLEPDYVP---ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVV--Y-VYINC 93 (394)
T ss_pred hhhCCCCCcC---CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcE--E-EEEEC
Confidence 3355556665 5689999888888877644 344456899999999999999999998754321110 0 01111
Q ss_pred ccccCCC------ccceEE-eCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC----HHHHHHHHHHHhhCC-
Q 036794 485 ISHDRGK------SRNIKE-VGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS----PDSWSAISKVVDRAP- 552 (1152)
Q Consensus 485 ~~i~~g~------~~dviE-Idaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls----~eaqnaLLklLEepp- 552 (1152)
....... ...+.. -.+......+++.+.+...... .+.+.||+|||+|.+. .+....|++.++..+
T Consensus 94 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~ 171 (394)
T PRK00411 94 QIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDE--RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPG 171 (394)
T ss_pred CcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCC
Confidence 1110000 000000 0011112233333322222111 1345789999999986 345566666666543
Q ss_pred CCEEEEEEcCCCC---cchHHHHccce--EEEecCCChhHHHHHHHHHHHHc--CCCCCHHHHHHHHHhc---CCCHHHH
Q 036794 553 RRVVFILVSSSLD---ALPHIIISRCQ--KFFFPKMKDADIIYTLQWIASKE--GIEIDKDALKLIASRS---DGSLRDA 622 (1152)
Q Consensus 553 ~~VifILaTN~~d---kL~~aL~SR~q--vI~F~~p~~~EI~eiL~~iakke--Gl~Id~dALelLAe~s---~GDLR~A 622 (1152)
.++.+|++++..+ .+.+.+.+++. .+.|++++.+++.++|...++.. ...+++++++.+++.+ .||+|.+
T Consensus 172 ~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a 251 (394)
T PRK00411 172 ARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVA 251 (394)
T ss_pred CeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHH
Confidence 3788999998764 46666777764 68999999999999999988643 2358999999999986 8999999
Q ss_pred HHHHHHHHHh-----CCCCCHHHHHHHHhcc
Q 036794 623 EMTLEQLSLL-----GQRISVPLVQELVGLI 648 (1152)
Q Consensus 623 in~LEkLsLl-----g~~IT~EdV~elVg~v 648 (1152)
+++|..++.. ...|+.++|.+++...
T Consensus 252 ~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 252 IDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 9999886544 2359999999888765
No 108
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.63 E-value=6.9e-15 Score=176.24 Aligned_cols=221 Identities=19% Similarity=0.287 Sum_probs=149.0
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCC----CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCC
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRK----VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCN 482 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gr----i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~ 482 (1152)
..++|++||+|++.+||+.+..-++.++.|+...- ....+||+||+|+|||+++++||++++....++..|...-.
T Consensus 5 ~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~ 84 (519)
T PF03215_consen 5 ESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRE 84 (519)
T ss_pred ccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccc
Confidence 46799999999999999999999999999987632 23478999999999999999999999987766655543211
Q ss_pred ccccccCCCccceEEe-CCCC--CCCHHHHHHH-HHHHhhCC-------CCCCceEEEEeCCCCCCHH----HHHHHHHH
Q 036794 483 SCISHDRGKSRNIKEV-GPVG--NFDFESILDL-LDNMVTSR-------PPSQYRIFVFDDCDTLSPD----SWSAISKV 547 (1152)
Q Consensus 483 ~c~~i~~g~~~dviEI-daas--~~~vdeIreL-le~a~~~P-------~~a~~kVVIIDEID~Ls~e----aqnaLLkl 547 (1152)
.-. ...++... +... ....+.+.++ +....+.. .....+||+|+|+..+... ..+.|.++
T Consensus 85 ~~~-----~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~ 159 (519)
T PF03215_consen 85 SDN-----QEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQY 159 (519)
T ss_pred ccc-----ccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHH
Confidence 000 00000000 0000 0011222222 22222211 1246889999999876332 34466666
Q ss_pred HhhCCC-CEEEEEEcC-------CC--------CcchHHHHcc--ceEEEecCCChhHHHHHHHHHHHHc-----CC-CC
Q 036794 548 VDRAPR-RVVFILVSS-------SL--------DALPHIIISR--CQKFFFPKMKDADIIYTLQWIASKE-----GI-EI 603 (1152)
Q Consensus 548 LEepp~-~VifILaTN-------~~--------dkL~~aL~SR--~qvI~F~~p~~~EI~eiL~~iakke-----Gl-~I 603 (1152)
+..... .++||++-. .. ..+++.|+.. +..|.|+|+...-+.+.|..++..+ +. ..
T Consensus 160 l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~ 239 (519)
T PF03215_consen 160 LRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKV 239 (519)
T ss_pred HHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccC
Confidence 666555 777777711 11 1366777664 5579999999999999999999987 32 23
Q ss_pred C--HHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 036794 604 D--KDALKLIASRSDGSLRDAEMTLEQLSLL 632 (1152)
Q Consensus 604 d--~dALelLAe~s~GDLR~Ain~LEkLsLl 632 (1152)
. .+.++.|+..+.||+|.|++.||.++..
T Consensus 240 p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~~ 270 (519)
T PF03215_consen 240 PDKQSVLDSIAESSNGDIRSAINNLQFWCLK 270 (519)
T ss_pred CChHHHHHHHHHhcCchHHHHHHHHHHHhcC
Confidence 2 3469999999999999999999999883
No 109
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.62 E-value=1.6e-14 Score=172.25 Aligned_cols=210 Identities=15% Similarity=0.134 Sum_probs=148.4
Q ss_pred CCCcCcccCcHHHHHHHHHHHHh--------C-CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 417 PRTFRDLVGQNLVAQALSNAVMR--------R-KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 417 P~sFddLVGQe~v~q~Lk~aL~~--------g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
..+|++|.|.+.+++.|...... | ..+.++|||||||||||++|+++|++++......
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l------------- 290 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL------------- 290 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE-------------
Confidence 34799999999988888753211 2 4567899999999999999999999987542211
Q ss_pred cCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH------------HHHHHHHHHHhhCCCCE
Q 036794 488 DRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP------------DSWSAISKVVDRAPRRV 555 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~------------eaqnaLLklLEepp~~V 555 (1152)
..+. ++ +.........+++++..+... .+.||||||+|.+.. ...+.|+..|++....+
T Consensus 291 ~~~~---l~--~~~vGese~~l~~~f~~A~~~----~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V 361 (489)
T CHL00195 291 DVGK---LF--GGIVGESESRMRQMIRIAEAL----SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPV 361 (489)
T ss_pred EhHH---hc--ccccChHHHHHHHHHHHHHhc----CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCce
Confidence 0000 00 000111234577777765432 347999999997632 13457788888877889
Q ss_pred EEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCC-CCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Q 036794 556 VFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIE-IDKDALKLIASRSDG-SLRDAEMTLEQLS 630 (1152)
Q Consensus 556 ifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~-Id~dALelLAe~s~G-DLR~Ain~LEkLs 630 (1152)
+||++||+++.+++++++ |+. .|.|+.|+.++..++++.++.+.+.. .++..++.|+..+.| +..++.+.+..++
T Consensus 362 ~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~ 441 (489)
T CHL00195 362 FVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAM 441 (489)
T ss_pred EEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 999999999999999987 776 58899999999999999988876533 345567888888766 6666666666554
Q ss_pred Hh----CCCCCHHHHHHHHhcc
Q 036794 631 LL----GQRISVPLVQELVGLI 648 (1152)
Q Consensus 631 Ll----g~~IT~EdV~elVg~v 648 (1152)
.. +..+|.+++..++...
T Consensus 442 ~~A~~~~~~lt~~dl~~a~~~~ 463 (489)
T CHL00195 442 YIAFYEKREFTTDDILLALKQF 463 (489)
T ss_pred HHHHHcCCCcCHHHHHHHHHhc
Confidence 32 3458888877776543
No 110
>CHL00176 ftsH cell division protein; Validated
Probab=99.60 E-value=3.9e-14 Score=173.58 Aligned_cols=207 Identities=20% Similarity=0.248 Sum_probs=147.9
Q ss_pred CCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.+|+|++|.+++++.|...+.. ...+.++||+||||||||++|+++|.+++.+.... .|..
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i--------s~s~ 251 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI--------SGSE 251 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeec--------cHHH
Confidence 4799999999988888766532 23456899999999999999999999876542111 1111
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------H---HHHHHHHHHhh--
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------D---SWSAISKVVDR-- 550 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------e---aqnaLLklLEe-- 550 (1152)
+. +. ....+...+++++..+.. ..+.||||||+|.+.. . ..+.|+..++.
T Consensus 252 f~--------~~--~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~ 317 (638)
T CHL00176 252 FV--------EM--FVGVGAARVRDLFKKAKE----NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK 317 (638)
T ss_pred HH--------HH--hhhhhHHHHHHHHHHHhc----CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc
Confidence 10 00 001234567777777643 3347999999998832 2 23445555544
Q ss_pred CCCCEEEEEEcCCCCcchHHHHcc--ce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHH
Q 036794 551 APRRVVFILVSSSLDALPHIIISR--CQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAEMTL 626 (1152)
Q Consensus 551 pp~~VifILaTN~~dkL~~aL~SR--~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ain~L 626 (1152)
...+++||++||.++.++++++++ +. .+.|+.|+.+++.++|+.++....+ .++..+..|+..+.| +.+++.+++
T Consensus 318 ~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lv 396 (638)
T CHL00176 318 GNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLL 396 (638)
T ss_pred CCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHH
Confidence 345789999999999999999874 43 6999999999999999998887433 345578899999888 888888888
Q ss_pred HHHHHh----C-CCCCHHHHHHHHhc
Q 036794 627 EQLSLL----G-QRISVPLVQELVGL 647 (1152)
Q Consensus 627 EkLsLl----g-~~IT~EdV~elVg~ 647 (1152)
..+++. + ..||.+++.+++..
T Consensus 397 neAal~a~r~~~~~It~~dl~~Ai~r 422 (638)
T CHL00176 397 NEAAILTARRKKATITMKEIDTAIDR 422 (638)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 876544 2 34899998888754
No 111
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.59 E-value=6.2e-14 Score=163.86 Aligned_cols=206 Identities=21% Similarity=0.259 Sum_probs=141.6
Q ss_pred hhhhhCCCCcCcc-cCcH--HHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 411 LTQKYMPRTFRDL-VGQN--LVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 411 l~eKyRP~sFddL-VGQe--~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
+..+| +|+++ +|.+ .+...+...... +...+.++||||+|+|||++++++++++.......
T Consensus 103 l~~~~---tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~------------ 167 (405)
T TIGR00362 103 LNPKY---TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNA------------ 167 (405)
T ss_pred CCCCC---cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCC------------
Confidence 34455 58884 4643 344555555443 22345689999999999999999999886431111
Q ss_pred ccCCCccceEEeCCC----------CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhhC-CC
Q 036794 487 HDRGKSRNIKEVGPV----------GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD--SWSAISKVVDRA-PR 553 (1152)
Q Consensus 487 i~~g~~~dviEIdaa----------s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e--aqnaLLklLEep-p~ 553 (1152)
.++.+... .....+.+ .+.+ ....+|+|||+|.+... .+..|+.+++.. ..
T Consensus 168 -------~v~yi~~~~~~~~~~~~~~~~~~~~~---~~~~------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~ 231 (405)
T TIGR00362 168 -------KVVYVSSEKFTNDFVNALRNNKMEEF---KEKY------RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHEN 231 (405)
T ss_pred -------cEEEEEHHHHHHHHHHHHHcCCHHHH---HHHH------HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC
Confidence 01122110 00011111 1222 12369999999998543 456677777652 12
Q ss_pred CEEEEEEcCCC-C---cchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 036794 554 RVVFILVSSSL-D---ALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626 (1152)
Q Consensus 554 ~VifILaTN~~-d---kL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~L 626 (1152)
+..+|++++.. . .+.+.|.+|+. .+.|++|+.+++..+|+..++..++.++++++++|+..+.||+|.+...|
T Consensus 232 ~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l 311 (405)
T TIGR00362 232 GKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGAL 311 (405)
T ss_pred CCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 34466666642 2 36677999986 69999999999999999999999999999999999999999999999998
Q ss_pred HHHHHh----CCCCCHHHHHHHHhc
Q 036794 627 EQLSLL----GQRISVPLVQELVGL 647 (1152)
Q Consensus 627 EkLsLl----g~~IT~EdV~elVg~ 647 (1152)
.++..+ +..||.+.+.+++..
T Consensus 312 ~~l~~~a~~~~~~it~~~~~~~L~~ 336 (405)
T TIGR00362 312 NRLLAYASLTGKPITLELAKEALKD 336 (405)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 887543 457999999888864
No 112
>PRK06620 hypothetical protein; Validated
Probab=99.59 E-value=4e-14 Score=152.50 Aligned_cols=190 Identities=16% Similarity=0.261 Sum_probs=133.8
Q ss_pred hhhhhCCCCcCccc-C--cHHHHHHHHHHHHhCC-CC--cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 411 LTQKYMPRTFRDLV-G--QNLVAQALSNAVMRRK-VG--LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 411 l~eKyRP~sFddLV-G--Qe~v~q~Lk~aL~~gr-i~--~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
+..+| +|+++| | +..+...+.++..... .+ ..++||||+|+|||++++++++..+...
T Consensus 9 ~~~~~---tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~------------- 72 (214)
T PRK06620 9 TSSKY---HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYI------------- 72 (214)
T ss_pred CCCCC---CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEE-------------
Confidence 34455 588865 4 4567788888776422 12 4589999999999999999877643210
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
+.. ... .+ +.. ....+++|||+|.+.....-.++..+.+. ...++|.++..+
T Consensus 73 -------------~~~-~~~-~~---~~~---------~~~d~lliDdi~~~~~~~lf~l~N~~~e~-g~~ilits~~~p 124 (214)
T PRK06620 73 -------------IKD-IFF-NE---EIL---------EKYNAFIIEDIENWQEPALLHIFNIINEK-QKYLLLTSSDKS 124 (214)
T ss_pred -------------cch-hhh-ch---hHH---------hcCCEEEEeccccchHHHHHHHHHHHHhc-CCEEEEEcCCCc
Confidence 000 000 00 010 23369999999977544433444444443 234444444344
Q ss_pred C--cchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh----CCC
Q 036794 565 D--ALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL----GQR 635 (1152)
Q Consensus 565 d--kL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl----g~~ 635 (1152)
. .+ +.|+||+. ++.+++|+.+++..++++.+...|+.++++++++|+.+++||+|.+++.|+.+... ...
T Consensus 125 ~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~ 203 (214)
T PRK06620 125 RNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRK 203 (214)
T ss_pred cccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 3 25 78999998 89999999999999999999989999999999999999999999999999997432 345
Q ss_pred CCHHHHHHHH
Q 036794 636 ISVPLVQELV 645 (1152)
Q Consensus 636 IT~EdV~elV 645 (1152)
||.+.+++++
T Consensus 204 it~~~~~~~l 213 (214)
T PRK06620 204 ITISLVKEVL 213 (214)
T ss_pred CCHHHHHHHh
Confidence 9999998875
No 113
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.59 E-value=5.1e-14 Score=164.08 Aligned_cols=208 Identities=16% Similarity=0.181 Sum_probs=142.7
Q ss_pred CCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|++|.|.+..++.|...+.. ...+.++|||||||||||++|+++|+.++...... .|.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v--------~~~ 199 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV--------VGS 199 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEe--------ehH
Confidence 3689999999999999887643 14456899999999999999999999987542111 011
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhh----
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PDSWSAISKVVDR---- 550 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~eaqnaLLklLEe---- 550 (1152)
.+. ..........++.+++.+.. ..+.||||||+|.+. .+.+..|+.+|.+
T Consensus 200 ~l~----------~~~~g~~~~~i~~~f~~a~~----~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 200 ELV----------QKFIGEGARLVRELFELARE----KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred HHh----------HhhccchHHHHHHHHHHHHh----cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 100 00001123345666665543 234799999999983 3345566666644
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHH
Q 036794 551 -APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAEMT 625 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ain~ 625 (1152)
...+++||++||.++.+++++++ |+. .|.|++|+.++..++++.++....+.- +..+..|+..+.| +.+++..+
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~~~~~~la~~t~g~sgadl~~l 344 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-DVDLEELAELTEGASGADLKAI 344 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-cCCHHHHHHHcCCCCHHHHHHH
Confidence 23589999999999999999986 665 599999999999999998876544421 1236667777666 55666666
Q ss_pred HHHHHHh-----CCCCCHHHHHHHHhcc
Q 036794 626 LEQLSLL-----GQRISVPLVQELVGLI 648 (1152)
Q Consensus 626 LEkLsLl-----g~~IT~EdV~elVg~v 648 (1152)
+..+++. ...|+.+|+.+++..+
T Consensus 345 ~~eA~~~a~~~~~~~i~~~d~~~A~~~~ 372 (389)
T PRK03992 345 CTEAGMFAIRDDRTEVTMEDFLKAIEKV 372 (389)
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 6665443 2358888888777654
No 114
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.57 E-value=1.3e-13 Score=163.44 Aligned_cols=205 Identities=19% Similarity=0.229 Sum_probs=141.2
Q ss_pred CcCccc-C--cHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccc
Q 036794 419 TFRDLV-G--QNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRN 494 (1152)
Q Consensus 419 sFddLV-G--Qe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~d 494 (1152)
+|++++ | +..+...+..+... +...+.++||||+|+|||++++++++++....+.. .
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~-------------------~ 180 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNA-------------------K 180 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCC-------------------e
Confidence 688865 5 33456666665554 23335689999999999999999999986432111 0
Q ss_pred eEEeCCCCCCC--HH-----HHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhC-CCCEEEEEEcCCC
Q 036794 495 IKEVGPVGNFD--FE-----SILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDRA-PRRVVFILVSSSL 564 (1152)
Q Consensus 495 viEIdaas~~~--vd-----eIreLle~a~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEep-p~~VifILaTN~~ 564 (1152)
+..+....... .. ...++.+.+ ....+|+|||+|.+.. ..+..|+.+++.. .....+|++++.+
T Consensus 181 v~yi~~~~~~~~~~~~~~~~~~~~~~~~~------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~ 254 (450)
T PRK00149 181 VVYVTSEKFTNDFVNALRNNTMEEFKEKY------RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRP 254 (450)
T ss_pred EEEEEHHHHHHHHHHHHHcCcHHHHHHHH------hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 22221100000 00 011122222 2346999999999854 2456677666542 1223355666543
Q ss_pred -C---cchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh----C
Q 036794 565 -D---ALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL----G 633 (1152)
Q Consensus 565 -d---kL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl----g 633 (1152)
. .+.+.|.+|+. .+.|.+|+.+++..+|+..+...++.++++++++|+..+.||+|.++..|.++..+ +
T Consensus 255 p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~ 334 (450)
T PRK00149 255 PKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTG 334 (450)
T ss_pred HHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhC
Confidence 2 36678999985 79999999999999999999999999999999999999999999999999988544 4
Q ss_pred CCCCHHHHHHHHhcc
Q 036794 634 QRISVPLVQELVGLI 648 (1152)
Q Consensus 634 ~~IT~EdV~elVg~v 648 (1152)
..||.+.+.+++...
T Consensus 335 ~~it~~~~~~~l~~~ 349 (450)
T PRK00149 335 KPITLELAKEALKDL 349 (450)
T ss_pred CCCCHHHHHHHHHHh
Confidence 569999999988753
No 115
>PRK05642 DNA replication initiation factor; Validated
Probab=99.57 E-value=8.3e-14 Score=151.77 Aligned_cols=199 Identities=21% Similarity=0.280 Sum_probs=137.1
Q ss_pred CcCccc-CcH-HHHHHHHHHHHh--CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccc
Q 036794 419 TFRDLV-GQN-LVAQALSNAVMR--RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRN 494 (1152)
Q Consensus 419 sFddLV-GQe-~v~q~Lk~aL~~--gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~d 494 (1152)
+|++++ |.. .++..+..+... +.....++|+||+|+|||++++++++++..... .
T Consensus 17 tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~---------------------~ 75 (234)
T PRK05642 17 TFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGE---------------------P 75 (234)
T ss_pred cccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC---------------------c
Confidence 699987 433 344445444332 122356889999999999999999987642210 0
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhCC-CCEEEEEEcCC-CC---cc
Q 036794 495 IKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDRAP-RRVVFILVSSS-LD---AL 567 (1152)
Q Consensus 495 viEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEepp-~~VifILaTN~-~d---kL 567 (1152)
+..+....-. .....+++.+. ...+|+||+++.+.. ..+..|+.+++... .+..+|++++. +. ..
T Consensus 76 v~y~~~~~~~--~~~~~~~~~~~------~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~ 147 (234)
T PRK05642 76 AVYLPLAELL--DRGPELLDNLE------QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIK 147 (234)
T ss_pred EEEeeHHHHH--hhhHHHHHhhh------hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCcc
Confidence 2222110000 01122333321 236999999998753 34567888877632 23455666553 32 34
Q ss_pred hHHHHccc---eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH---Hh-CCCCCHHH
Q 036794 568 PHIIISRC---QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLS---LL-GQRISVPL 640 (1152)
Q Consensus 568 ~~aL~SR~---qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLs---Ll-g~~IT~Ed 640 (1152)
.+.|.||+ ..+.+.+|+.+++..+++..+...++.++++++++|+.+++||+|.+++.|+.+. +. +..||...
T Consensus 148 ~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~ 227 (234)
T PRK05642 148 LPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPF 227 (234)
T ss_pred CccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCcCCHHH
Confidence 67799999 6899999999999999998888889999999999999999999999999999874 33 35699999
Q ss_pred HHHHHh
Q 036794 641 VQELVG 646 (1152)
Q Consensus 641 V~elVg 646 (1152)
++++++
T Consensus 228 ~~~~L~ 233 (234)
T PRK05642 228 LKETLG 233 (234)
T ss_pred HHHHhc
Confidence 998875
No 116
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.57 E-value=1.4e-13 Score=160.86 Aligned_cols=208 Identities=19% Similarity=0.188 Sum_probs=141.9
Q ss_pred CCcCcccCcHHHHHHHHHHHHh-----------C-CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR-----------R-KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~-----------g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|+||.|.+.+++.|.+++.. | ..+.++|||||||||||++|+++|+.++..+... .+.
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i--------~~s 213 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV--------VGS 213 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE--------ehH
Confidence 4799999999999999887752 1 3456899999999999999999999876542111 000
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHH---HHHHhh-
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAI---SKVVDR- 550 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaL---LklLEe- 550 (1152)
. +. ......+...+++++..+.. ..+.||||||+|.+.. ..+..| +..++.
T Consensus 214 ~--------l~--~k~~ge~~~~lr~lf~~A~~----~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 214 E--------FV--QKYLGEGPRMVRDVFRLARE----NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred H--------HH--HHhcchhHHHHHHHHHHHHh----cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 0 00 00001123346666665532 3457999999998731 233344 444443
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHH
Q 036794 551 -APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAEMT 625 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ain~ 625 (1152)
...+++||++||.++.+++++++ |+. .|.|+.|+..+...+++.++...++.-+ -.+..++..+.| +..++.++
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d-vd~~~la~~t~g~sgaDI~~l 358 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE-VDLEDFVSRPEKISAADIAAI 358 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc-cCHHHHHHHcCCCCHHHHHHH
Confidence 33589999999999999999887 665 5999999999999999988876655422 236667777665 67777777
Q ss_pred HHHHHHh---C--CCCCHHHHHHHHhcc
Q 036794 626 LEQLSLL---G--QRISVPLVQELVGLI 648 (1152)
Q Consensus 626 LEkLsLl---g--~~IT~EdV~elVg~v 648 (1152)
+..+.+. . ..|+.+|+.+++..+
T Consensus 359 ~~eA~~~A~r~~~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 359 CQEAGMQAVRKNRYVILPKDFEKGYKTV 386 (398)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 7776543 2 248888887776543
No 117
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.57 E-value=9.3e-14 Score=173.57 Aligned_cols=220 Identities=16% Similarity=0.163 Sum_probs=161.2
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
..+|.++.||..+++++|+++.+..+...+......+ +||+||||||||++|+.+|+.+.....+.. .
T Consensus 169 ~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n-~lL~G~pG~GKT~l~~~la~~~~~~~~p~~----l------- 236 (731)
T TIGR02639 169 TVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNN-PLLVGEPGVGKTAIAEGLALRIAEGKVPEN----L------- 236 (731)
T ss_pred hhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCc-eEEECCCCCCHHHHHHHHHHHHHhCCCchh----h-------
Confidence 4578889999999999999999999888887766554 789999999999999999998753321110 0
Q ss_pred cCCCccceEEeCCC------CCC-C-HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC---------HHHHHHHHHHHhh
Q 036794 488 DRGKSRNIKEVGPV------GNF-D-FESILDLLDNMVTSRPPSQYRIFVFDDCDTLS---------PDSWSAISKVVDR 550 (1152)
Q Consensus 488 ~~g~~~dviEIdaa------s~~-~-vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls---------~eaqnaLLklLEe 550 (1152)
....++.++.. ... . ...++.+++.+... ...||||||+|.+. .++++.|+..|+.
T Consensus 237 ---~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~----~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~ 309 (731)
T TIGR02639 237 ---KNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKE----PNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS 309 (731)
T ss_pred ---cCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhcc----CCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC
Confidence 00112333210 111 1 24567777766432 35799999999884 2356778888875
Q ss_pred CCCCEEEEEEcCCCC-----cchHHHHccceEEEecCCChhHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCC---
Q 036794 551 APRRVVFILVSSSLD-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK----EGIEIDKDALKLIASRSDGS--- 618 (1152)
Q Consensus 551 pp~~VifILaTN~~d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk----eGl~Id~dALelLAe~s~GD--- 618 (1152)
..+.+|.+||..+ ..+++|.+||+.|.|++|+.+++..+|+..... .++.++++++..++..+..-
T Consensus 310 --g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~ 387 (731)
T TIGR02639 310 --GKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIND 387 (731)
T ss_pred --CCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccccc
Confidence 6799999998632 368899999999999999999999999976654 46789999999999886542
Q ss_pred ---HHHHHHHHHHHHHh---C------CCCCHHHHHHHHhcc
Q 036794 619 ---LRDAEMTLEQLSLL---G------QRISVPLVQELVGLI 648 (1152)
Q Consensus 619 ---LR~Ain~LEkLsLl---g------~~IT~EdV~elVg~v 648 (1152)
.+.++.+|+.++.. . ..|+.++|.+++...
T Consensus 388 r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 388 RFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKM 429 (731)
T ss_pred ccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHH
Confidence 56788888886542 1 138888888887653
No 118
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=8.9e-14 Score=169.64 Aligned_cols=209 Identities=17% Similarity=0.181 Sum_probs=155.0
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
.+.+|+|+.|.+++++.|.+.+.. .++|.++||+||||||||.+|+|+|.+.+-++...
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~sv---------- 375 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSV---------- 375 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeee----------
Confidence 346899999999999999887753 68889999999999999999999999887653211
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH------------H---HHHHHHHHHh
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP------------D---SWSAISKVVD 549 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~------------e---aqnaLLklLE 549 (1152)
+..+++|+- ...+...+++++..++.. .+.+|||||+|.+.. + .+|.||--|+
T Consensus 376 ------SGSEFvE~~--~g~~asrvr~lf~~ar~~----aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD 443 (774)
T KOG0731|consen 376 ------SGSEFVEMF--VGVGASRVRDLFPLARKN----APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD 443 (774)
T ss_pred ------chHHHHHHh--cccchHHHHHHHHHhhcc----CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc
Confidence 112233332 224467899999887543 347999999998732 1 2444544444
Q ss_pred h--CCCCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHH
Q 036794 550 R--APRRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAE 623 (1152)
Q Consensus 550 e--pp~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ai 623 (1152)
. ....|+|+.+||.++.|+++|++-+. .|....|+......++..++....+..++..+..|+..++| .-.++.
T Consensus 444 gf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~ 523 (774)
T KOG0731|consen 444 GFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLA 523 (774)
T ss_pred CCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHH
Confidence 4 44679999999999999999998554 48889999999999999888877766566666679999877 445666
Q ss_pred HHHHHHHHhC-----CCCCHHHHHHHHh
Q 036794 624 MTLEQLSLLG-----QRISVPLVQELVG 646 (1152)
Q Consensus 624 n~LEkLsLlg-----~~IT~EdV~elVg 646 (1152)
|++..+++.+ ..|+..++.+++.
T Consensus 524 n~~neaa~~a~r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 524 NLCNEAALLAARKGLREIGTKDLEYAIE 551 (774)
T ss_pred hhhhHHHHHHHHhccCccchhhHHHHHH
Confidence 7777765552 3477777777765
No 119
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.56 E-value=7.3e-14 Score=168.07 Aligned_cols=215 Identities=13% Similarity=0.178 Sum_probs=142.0
Q ss_pred CcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cceE
Q 036794 419 TFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNIK 496 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dvi 496 (1152)
+|++|+|++..++.+...+.. ......+||+|++||||+++|++|+....... .|+ ...+|..+..... ..++
T Consensus 210 ~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~----~pf-v~inC~~l~e~lleseLF 284 (526)
T TIGR02329 210 RLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRD----FPF-VAINCGAIAESLLEAELF 284 (526)
T ss_pred chhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCC----CCE-EEeccccCChhHHHHHhc
Confidence 599999999999988888754 55666799999999999999999998653322 121 1223333321000 0000
Q ss_pred EeCCCCCCCHH--HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCC
Q 036794 497 EVGPVGNFDFE--SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSS 563 (1152)
Q Consensus 497 EIdaas~~~vd--eIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~ 563 (1152)
........+.. .-..+++ .+..++|||||++.|+...|..|+++|++. +.++.+|++|+.
T Consensus 285 G~~~gaftga~~~~~~Gl~e-------~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~ 357 (526)
T TIGR02329 285 GYEEGAFTGARRGGRTGLIE-------AAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHC 357 (526)
T ss_pred CCcccccccccccccccchh-------hcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCC
Confidence 00000000000 0001111 155789999999999999999999999872 246689998874
Q ss_pred C-------CcchHHHHccceE--EEecCCCh--hHHHHHHHHH----HHHcCCCCCHHHHHH-------HHHh-cCCCHH
Q 036794 564 L-------DALPHIIISRCQK--FFFPKMKD--ADIIYTLQWI----ASKEGIEIDKDALKL-------IASR-SDGSLR 620 (1152)
Q Consensus 564 ~-------dkL~~aL~SR~qv--I~F~~p~~--~EI~eiL~~i----akkeGl~Id~dALel-------LAe~-s~GDLR 620 (1152)
. ..+.+.|..|+.. |.+||+.+ +|+..++..+ +...++.+++++++. |..+ |+||+|
T Consensus 358 ~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvr 437 (526)
T TIGR02329 358 ALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVR 437 (526)
T ss_pred CHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHH
Confidence 3 2466678888764 66666654 3555444443 344567899999988 8878 999999
Q ss_pred HHHHHHHHHHHhC-----CCCCHHHHHHHH
Q 036794 621 DAEMTLEQLSLLG-----QRISVPLVQELV 645 (1152)
Q Consensus 621 ~Ain~LEkLsLlg-----~~IT~EdV~elV 645 (1152)
++.|.+++++... ..|+.+++..+.
T Consensus 438 EL~nvier~~i~~~~~~~~~I~~~~l~~~~ 467 (526)
T TIGR02329 438 ELRNLVERLALELSAMPAGALTPDVLRALA 467 (526)
T ss_pred HHHHHHHHHHHhcccCCCCccCHHHhhhhc
Confidence 9999999987652 468888876543
No 120
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.55 E-value=5.2e-14 Score=165.73 Aligned_cols=213 Identities=18% Similarity=0.210 Sum_probs=142.2
Q ss_pred hhhhCCCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCC
Q 036794 412 TQKYMPRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCG 479 (1152)
Q Consensus 412 ~eKyRP~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg 479 (1152)
.+++.+.+|+||.|.+..++.|.+++.. -..+.++|||||||||||++|+++|+.+...+...
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V----- 248 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRV----- 248 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE-----
Confidence 4466668999999999999999988753 13456899999999999999999999876432110
Q ss_pred CCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHH
Q 036794 480 FCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKVV 548 (1152)
Q Consensus 480 ~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLklL 548 (1152)
.... +. ......+...+++++..+.. ..+.||||||+|.+.. +.+..|+.+|
T Consensus 249 --------~~se---L~--~k~~Ge~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL 311 (438)
T PTZ00361 249 --------VGSE---LI--QKYLGDGPKLVRELFRVAEE----NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELL 311 (438)
T ss_pred --------ecch---hh--hhhcchHHHHHHHHHHHHHh----CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHH
Confidence 0000 00 00001123346666665532 3457999999987631 2334444444
Q ss_pred hh-----CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-C
Q 036794 549 DR-----APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-S 618 (1152)
Q Consensus 549 Ee-----pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-D 618 (1152)
.. ...++.||++||.++.+++++++ |+. .|.|+.|+..++.++++.++.+..+ .++ .+..++..+.| +
T Consensus 312 ~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l--~~dvdl~~la~~t~g~s 389 (438)
T PTZ00361 312 NQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL--AEDVDLEEFIMAKDELS 389 (438)
T ss_pred HHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC--CcCcCHHHHHHhcCCCC
Confidence 33 24589999999999999999876 665 5999999999999999988776544 322 24555555443 5
Q ss_pred HHHHHHHHHHHHHh---C--CCCCHHHHHHHHhcc
Q 036794 619 LRDAEMTLEQLSLL---G--QRISVPLVQELVGLI 648 (1152)
Q Consensus 619 LR~Ain~LEkLsLl---g--~~IT~EdV~elVg~v 648 (1152)
..++.+++..+++. . ..|+.+|+.+++..+
T Consensus 390 gAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 390 GADIKAICTEAGLLALRERRMKVTQADFRKAKEKV 424 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHH
Confidence 55555555555433 2 358999988877654
No 121
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.7e-14 Score=176.81 Aligned_cols=215 Identities=21% Similarity=0.351 Sum_probs=162.3
Q ss_pred ccccccccccccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCC--------cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 396 GQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVG--------LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 396 ~~~~l~~~~~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~--------~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++.+........+.+... ..++||++++..+.++|+..+.+ ..+||.||+|+|||.+|++||..+
T Consensus 470 Pv~~l~~~e~~kll~le~~L~----~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L 545 (786)
T COG0542 470 PVAKLLEDEKEKLLNLERRLK----KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL 545 (786)
T ss_pred ChhhhchhhHHHHHHHHHHHh----cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh
Confidence 455555555555555555653 67999999999999999874332 379999999999999999999999
Q ss_pred cccCCCCCCCCCCCCccccccCCCccceEEe-----CCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHH
Q 036794 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEV-----GPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWS 542 (1152)
Q Consensus 468 ~~~~~e~~epcg~c~~c~~i~~g~~~dviEI-----daas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqn 542 (1152)
+... .....++++.+++-..+ .|++++++++-..+.+.++..|+ .||++|||++.+++.+|
T Consensus 546 fg~e----------~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~Py----SViLlDEIEKAHpdV~n 611 (786)
T COG0542 546 FGDE----------QALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPY----SVILLDEIEKAHPDVFN 611 (786)
T ss_pred cCCC----------ccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCC----eEEEechhhhcCHHHHH
Confidence 8643 22355666665544433 26688899998888888887765 89999999999999999
Q ss_pred HHHHHHhhC-----------CCCEEEEEEcCCC----------------------------CcchHHHHccce-EEEecC
Q 036794 543 AISKVVDRA-----------PRRVVFILVSSSL----------------------------DALPHIIISRCQ-KFFFPK 582 (1152)
Q Consensus 543 aLLklLEep-----------p~~VifILaTN~~----------------------------dkL~~aL~SR~q-vI~F~~ 582 (1152)
.||++|++. -.+++|||++|-- ..+.|.++.|+. +|.|.+
T Consensus 612 ilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~ 691 (786)
T COG0542 612 LLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNP 691 (786)
T ss_pred HHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccC
Confidence 999999982 2588999998720 015667888988 899999
Q ss_pred CChhHHHHHHHHHHH-------HcCC--CCCHHHHHHHHHhc---CCCHHHHHHHHHH
Q 036794 583 MKDADIIYTLQWIAS-------KEGI--EIDKDALKLIASRS---DGSLRDAEMTLEQ 628 (1152)
Q Consensus 583 p~~~EI~eiL~~iak-------keGl--~Id~dALelLAe~s---~GDLR~Ain~LEk 628 (1152)
++.+++.+++...+. ..++ .+++++.++|++.. ....|-+...|++
T Consensus 692 L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~ 749 (786)
T COG0542 692 LSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQ 749 (786)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHH
Confidence 999988877655443 3344 58999999999983 2345666666655
No 122
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.55 E-value=5.8e-14 Score=177.32 Aligned_cols=221 Identities=15% Similarity=0.239 Sum_probs=152.5
Q ss_pred ccccccccccccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhC-------CCC-cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 396 GQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRR-------KVG-LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 396 ~~~~l~~~~~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~g-------ri~-~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++..........+.+... ..|+||+.++..+.+++... ..+ ..+||+||+|+|||.+|+++|+.+
T Consensus 545 p~~~~~~~e~~~l~~l~~~L~----~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 545 PVGRMVRDEIEAVLSLPDRLA----ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CchhhchhHHHHHHHHHHHhc----CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 444454444444555555554 67999999999999988652 112 258999999999999999999998
Q ss_pred cccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHH
Q 036794 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKV 547 (1152)
Q Consensus 468 ~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLkl 547 (1152)
..... +..+..|..+..........-.+.++.+.++-..+.+.+...| +.||+|||++.++++.++.|+++
T Consensus 621 ~~~~~-----~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p----~svvllDEieka~~~v~~~Llq~ 691 (852)
T TIGR03345 621 YGGEQ-----NLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKP----YSVVLLDEVEKAHPDVLELFYQV 691 (852)
T ss_pred hCCCc-----ceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCC----CcEEEEechhhcCHHHHHHHHHH
Confidence 64311 1111122222111111011112334455444334555555444 47999999999999999999999
Q ss_pred HhhCC-----------CCEEEEEEcCC-----------CC------------------cchHHHHccceEEEecCCChhH
Q 036794 548 VDRAP-----------RRVVFILVSSS-----------LD------------------ALPHIIISRCQKFFFPKMKDAD 587 (1152)
Q Consensus 548 LEepp-----------~~VifILaTN~-----------~d------------------kL~~aL~SR~qvI~F~~p~~~E 587 (1152)
|++.. .+++||++||- .. .+.|++++|+.+|.|.+++.++
T Consensus 692 ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~ 771 (852)
T TIGR03345 692 FDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDV 771 (852)
T ss_pred hhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHH
Confidence 99843 68899999872 00 1567799999999999999999
Q ss_pred HHHHHHHHHHH--------cC--CCCCHHHHHHHHHhcCC---CHHHHHHHHHHH
Q 036794 588 IIYTLQWIASK--------EG--IEIDKDALKLIASRSDG---SLRDAEMTLEQL 629 (1152)
Q Consensus 588 I~eiL~~iakk--------eG--l~Id~dALelLAe~s~G---DLR~Ain~LEkL 629 (1152)
+..++...+.. .| +.++++++++|+..+.+ +.|.+.+.|++.
T Consensus 772 l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~ 826 (852)
T TIGR03345 772 LAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQT 826 (852)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHH
Confidence 99887665532 14 46899999999999766 799999998874
No 123
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.55 E-value=1.5e-13 Score=165.48 Aligned_cols=217 Identities=14% Similarity=0.192 Sum_probs=138.3
Q ss_pred CcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcc--c--CCCCCCCCCCCCccccccCCCc-
Q 036794 419 TFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNC--Q--SLEQPKPCGFCNSCISHDRGKS- 492 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~--~--~~e~~epcg~c~~c~~i~~g~~- 492 (1152)
.|++|+|++..++.+...+.. ......+||+|++||||+.+|++|+..+.. . ......|+ ...+|..+.....
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pf-v~inCaal~e~lle 295 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPF-VAVNCGAIAESLLE 295 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCe-EEeecccCChhhHH
Confidence 599999999999999888754 556667999999999999999999987221 0 00111222 1223333211000
Q ss_pred cceEEeCCCCCCCHH--HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEE
Q 036794 493 RNIKEVGPVGNFDFE--SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFIL 559 (1152)
Q Consensus 493 ~dviEIdaas~~~vd--eIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifIL 559 (1152)
..++........+.. .-..+++ .+.+++||||||+.|+...|..|+++|++. +.++++|+
T Consensus 296 seLFG~~~gaftga~~~~~~Gl~e-------~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIa 368 (538)
T PRK15424 296 AELFGYEEGAFTGSRRGGRAGLFE-------IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVIS 368 (538)
T ss_pred HHhcCCccccccCccccccCCchh-------ccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEE
Confidence 000000000000000 0000111 256789999999999999999999999872 34678999
Q ss_pred EcCCC-C------cchHHHHccceE--EEecCCCh--hHHHHHHHHHHH----HcCCCCCHHHH-------HHHHHh-cC
Q 036794 560 VSSSL-D------ALPHIIISRCQK--FFFPKMKD--ADIIYTLQWIAS----KEGIEIDKDAL-------KLIASR-SD 616 (1152)
Q Consensus 560 aTN~~-d------kL~~aL~SR~qv--I~F~~p~~--~EI~eiL~~iak----keGl~Id~dAL-------elLAe~-s~ 616 (1152)
+|+.. . .+.+.|..|+.. |.+||+.+ +|+..++..+++ ..+..++++++ +.|..| |+
T Consensus 369 at~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WP 448 (538)
T PRK15424 369 ATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWP 448 (538)
T ss_pred ecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCC
Confidence 98743 1 356678888875 55555543 355555555444 35677888776 567777 99
Q ss_pred CCHHHHHHHHHHHHHhC-----CCCCHHHHHH
Q 036794 617 GSLRDAEMTLEQLSLLG-----QRISVPLVQE 643 (1152)
Q Consensus 617 GDLR~Ain~LEkLsLlg-----~~IT~EdV~e 643 (1152)
||+|++.|.+++++.+. ..|+.+++.+
T Consensus 449 GNvREL~nvier~~i~~~~~~~~~i~~~~l~~ 480 (538)
T PRK15424 449 GNVRELRNLMERLALFLSVEPTPDLTPQFLQL 480 (538)
T ss_pred chHHHHHHHHHHHHHhcCCCCcCccCHHHhhh
Confidence 99999999999988762 2477776643
No 124
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.54 E-value=8.1e-14 Score=176.03 Aligned_cols=216 Identities=17% Similarity=0.286 Sum_probs=150.7
Q ss_pred ccccccccccccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCC--------CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 396 GQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKV--------GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 396 ~~~~l~~~~~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri--------~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+...+..........+.+... ..|+||+.++..|..++...+. ...|||+||+|+|||++|++||+.+
T Consensus 488 p~~~~~~~~~~~l~~l~~~L~----~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 488 PVNKLTKSESEKLLHMEETLH----KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CchhhchhHHHHHHHHHHHhc----CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 444444444444445555553 6799999999999999875322 2469999999999999999999999
Q ss_pred cccCCCCCCCCCCCCccccccCCCccceEE----e-CCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHH
Q 036794 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKE----V-GPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWS 542 (1152)
Q Consensus 468 ~~~~~e~~epcg~c~~c~~i~~g~~~dviE----I-daas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqn 542 (1152)
++... +| ..++++.+.+... + .+.++.+.++...+.+.+...|+ .||||||+|+++++.++
T Consensus 564 ~~~~~----~~------~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~----~VvllDeieka~~~v~~ 629 (821)
T CHL00095 564 FGSED----AM------IRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPY----TVVLFDEIEKAHPDIFN 629 (821)
T ss_pred cCCcc----ce------EEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCC----eEEEECChhhCCHHHHH
Confidence 86521 22 2222222211111 1 13345566665566666665554 89999999999999999
Q ss_pred HHHHHHhhC-----------CCCEEEEEEcCCCC-------------------------------------cchHHHHcc
Q 036794 543 AISKVVDRA-----------PRRVVFILVSSSLD-------------------------------------ALPHIIISR 574 (1152)
Q Consensus 543 aLLklLEep-----------p~~VifILaTN~~d-------------------------------------kL~~aL~SR 574 (1152)
.|+++|++. -.+++||++||-.. .+.|.+++|
T Consensus 630 ~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnR 709 (821)
T CHL00095 630 LLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNR 709 (821)
T ss_pred HHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhcc
Confidence 999999983 36889999987311 034568899
Q ss_pred c-eEEEecCCChhHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHhc---CCCHHHHHHHHHHH
Q 036794 575 C-QKFFFPKMKDADIIYTLQWIASK-------EG--IEIDKDALKLIASRS---DGSLRDAEMTLEQL 629 (1152)
Q Consensus 575 ~-qvI~F~~p~~~EI~eiL~~iakk-------eG--l~Id~dALelLAe~s---~GDLR~Ain~LEkL 629 (1152)
+ .+|.|.+++.+++..++...+.+ .| +.++++++++|+... .-..|.+...+++.
T Consensus 710 id~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~ 777 (821)
T CHL00095 710 LDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRL 777 (821)
T ss_pred CCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHH
Confidence 9 68999999999999887765543 33 468999999999972 22467666666654
No 125
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.54 E-value=1.6e-13 Score=162.41 Aligned_cols=205 Identities=14% Similarity=0.149 Sum_probs=139.3
Q ss_pred CcCccc-Cc--HHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccce
Q 036794 419 TFRDLV-GQ--NLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNI 495 (1152)
Q Consensus 419 sFddLV-GQ--e~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dv 495 (1152)
+|++++ |. ..+...+..........+.++||||+|+|||++++++++++....+.. .+
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~-------------------~v 163 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDL-------------------RV 163 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCC-------------------eE
Confidence 699977 63 334455555554322234689999999999999999999875432111 02
Q ss_pred EEeCCCCC-------CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhCC-CCEEEEEEcC-CC
Q 036794 496 KEVGPVGN-------FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDRAP-RRVVFILVSS-SL 564 (1152)
Q Consensus 496 iEIdaas~-------~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEepp-~~VifILaTN-~~ 564 (1152)
..+....- .....+.++.+... ....+|+|||++.+.. ..+..|+.+++... ....+|++++ .+
T Consensus 164 ~yi~~~~f~~~~~~~~~~~~~~~f~~~~~-----~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p 238 (440)
T PRK14088 164 MYITSEKFLNDLVDSMKEGKLNEFREKYR-----KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_pred EEEEHHHHHHHHHHHHhcccHHHHHHHHH-----hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCH
Confidence 22211000 00000111111111 1347999999998753 24556666665421 2234556664 33
Q ss_pred C---cchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh----CC
Q 036794 565 D---ALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL----GQ 634 (1152)
Q Consensus 565 d---kL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl----g~ 634 (1152)
. .+.+.+.+|+. .+.|.+|+.+.+..+|+..++..++.++++++++|+.++.||+|.+...|.++..+ +.
T Consensus 239 ~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~ 318 (440)
T PRK14088 239 QKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGE 318 (440)
T ss_pred HHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCC
Confidence 3 46677999987 79999999999999999999999999999999999999999999999999998544 55
Q ss_pred CCCHHHHHHHHhc
Q 036794 635 RISVPLVQELVGL 647 (1152)
Q Consensus 635 ~IT~EdV~elVg~ 647 (1152)
.||.+.+.+++..
T Consensus 319 ~it~~~a~~~L~~ 331 (440)
T PRK14088 319 EVDLKEAILLLKD 331 (440)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999888864
No 126
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.54 E-value=1.1e-13 Score=167.31 Aligned_cols=218 Identities=14% Similarity=0.158 Sum_probs=143.6
Q ss_pred hhCCCCcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc
Q 036794 414 KYMPRTFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS 492 (1152)
Q Consensus 414 KyRP~sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~ 492 (1152)
+++..+|++|+|++..++.+.+.+.. ......+||+||+|||||++|++|+........ |+ ...+|..+.....
T Consensus 189 ~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~----pf-v~i~c~~~~~~~~ 263 (534)
T TIGR01817 189 RRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKR----PF-VKVNCAALSETLL 263 (534)
T ss_pred ccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCC----Ce-EEeecCCCCHHHH
Confidence 34556899999999998888877765 344556999999999999999999987543211 11 1122222211000
Q ss_pred -cceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-----------CCEEEEEE
Q 036794 493 -RNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-----------RRVVFILV 560 (1152)
Q Consensus 493 -~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-----------~~VifILa 560 (1152)
..++........+.. .........+.+++|||||++.|+...|..|+++|++.. .++.+|++
T Consensus 264 ~~~lfg~~~~~~~~~~------~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~ 337 (534)
T TIGR01817 264 ESELFGHEKGAFTGAI------AQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAA 337 (534)
T ss_pred HHHHcCCCCCccCCCC------cCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEe
Confidence 000000000000000 000000112557899999999999999999999998732 35889998
Q ss_pred cCCC-------CcchHHHHccceE--EEecCCC--hhHHHHHHHHHHH----HcC--CCCCHHHHHHHHHh-cCCCHHHH
Q 036794 561 SSSL-------DALPHIIISRCQK--FFFPKMK--DADIIYTLQWIAS----KEG--IEIDKDALKLIASR-SDGSLRDA 622 (1152)
Q Consensus 561 TN~~-------dkL~~aL~SR~qv--I~F~~p~--~~EI~eiL~~iak----keG--l~Id~dALelLAe~-s~GDLR~A 622 (1152)
|+.. ..+.+.|..|+.. |.++++. .+++..++..++. +.+ +.+++++++.|..+ |+||+|++
T Consensus 338 s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL 417 (534)
T TIGR01817 338 TNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVREL 417 (534)
T ss_pred CCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHH
Confidence 8743 2466778888874 6677775 3566655555443 233 57999999999999 99999999
Q ss_pred HHHHHHHHHh--CCCCCHHHHH
Q 036794 623 EMTLEQLSLL--GQRISVPLVQ 642 (1152)
Q Consensus 623 in~LEkLsLl--g~~IT~EdV~ 642 (1152)
.|.+++++.. +..|+.+++.
T Consensus 418 ~~v~~~a~~~~~~~~I~~~~l~ 439 (534)
T TIGR01817 418 ENCLERTATLSRSGTITRSDFS 439 (534)
T ss_pred HHHHHHHHHhCCCCcccHHHCc
Confidence 9999998776 3468888875
No 127
>PRK09087 hypothetical protein; Validated
Probab=99.54 E-value=1.4e-13 Score=149.54 Aligned_cols=189 Identities=17% Similarity=0.171 Sum_probs=134.9
Q ss_pred CcCcccC---cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccce
Q 036794 419 TFRDLVG---QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNI 495 (1152)
Q Consensus 419 sFddLVG---Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dv 495 (1152)
+|++++. +..++..+.++. +...+.++|+||+|+|||++++++++.....
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~--~~~~~~l~l~G~~GsGKThLl~~~~~~~~~~------------------------- 71 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWP--NWPSPVVVLAGPVGSGKTHLASIWREKSDAL------------------------- 71 (226)
T ss_pred ChhceeecCchHHHHHHHHhcc--cCCCCeEEEECCCCCCHHHHHHHHHHhcCCE-------------------------
Confidence 6999883 445666665544 2234558999999999999999998764321
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-CCEEEEEEcCC-CC---cchHH
Q 036794 496 KEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-RRVVFILVSSS-LD---ALPHI 570 (1152)
Q Consensus 496 iEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-~~VifILaTN~-~d---kL~~a 570 (1152)
.++.. .+.. +++..+. ..+|+|||++.+. ..+..|+.+++... ....+|++++. +. ...+.
T Consensus 72 -~i~~~-~~~~----~~~~~~~-------~~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~d 137 (226)
T PRK09087 72 -LIHPN-EIGS----DAANAAA-------EGPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPD 137 (226)
T ss_pred -EecHH-Hcch----HHHHhhh-------cCeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhcccccc
Confidence 12110 0111 1222211 1589999999874 23455666665422 24456666653 22 34567
Q ss_pred HHccc---eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH---HHh-CCCCCHHHHHH
Q 036794 571 IISRC---QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL---SLL-GQRISVPLVQE 643 (1152)
Q Consensus 571 L~SR~---qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkL---sLl-g~~IT~EdV~e 643 (1152)
|+||+ ..+.+.+|+.+++..+|++.++..++.++++++++|+.++.|+++.++..|+++ ++. +..||...+++
T Consensus 138 L~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~ 217 (226)
T PRK09087 138 LKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAE 217 (226)
T ss_pred HHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 99998 689999999999999999999999999999999999999999999999877776 333 55799999999
Q ss_pred HHhcc
Q 036794 644 LVGLI 648 (1152)
Q Consensus 644 lVg~v 648 (1152)
++...
T Consensus 218 ~l~~~ 222 (226)
T PRK09087 218 VLNEM 222 (226)
T ss_pred HHHhh
Confidence 98653
No 128
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.6e-13 Score=161.37 Aligned_cols=181 Identities=19% Similarity=0.211 Sum_probs=135.8
Q ss_pred CcCcccCcHHHHHHHHHHHHhC-----------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 419 TFRDLVGQNLVAQALSNAVMRR-----------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~g-----------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
.|.+|-|.+..+..|...+..- ..+.++|||||||||||.+|++||.+++.++.....| .
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isAp--------e- 258 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAP--------E- 258 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecch--------h-
Confidence 5999999999998888776542 3345899999999999999999999998764332211 0
Q ss_pred cCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH-----------HHHHHHHHHhhC-----
Q 036794 488 DRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD-----------SWSAISKVVDRA----- 551 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e-----------aqnaLLklLEep----- 551 (1152)
.+...+.-.-..|+++|+++... ...||||||||.+.+. ....|+..|++.
T Consensus 259 ---------ivSGvSGESEkkiRelF~~A~~~----aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~ 325 (802)
T KOG0733|consen 259 ---------IVSGVSGESEKKIRELFDQAKSN----APCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT 325 (802)
T ss_pred ---------hhcccCcccHHHHHHHHHHHhcc----CCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc
Confidence 11122334467899999998644 3489999999999653 345788888872
Q ss_pred -CCCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Q 036794 552 -PRRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA 622 (1152)
Q Consensus 552 -p~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~A 622 (1152)
...|++|.+||.|+.|+++|++-+. .|-+.-|+.....++|+.+|+...+.- +-.+..||..++|-+..=
T Consensus 326 ~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGAD 399 (802)
T KOG0733|consen 326 KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGAD 399 (802)
T ss_pred CCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchh
Confidence 3679999999999999999987544 488899999999999999997554432 123677888888855543
No 129
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.53 E-value=5.1e-13 Score=168.89 Aligned_cols=204 Identities=16% Similarity=0.174 Sum_probs=151.1
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
...++++.||..+++++|+++.+..+...+.+...++ .||+||||+|||++|+.+|+.+.....+.. ..
T Consensus 174 ~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n-~lLvG~pGvGKTal~~~La~~i~~~~v~~~-----l~----- 242 (852)
T TIGR03345 174 TTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNN-PILTGEAGVGKTAVVEGLALRIAAGDVPPA-----LR----- 242 (852)
T ss_pred hhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCc-eeEECCCCCCHHHHHHHHHHHHhhCCCCcc-----cc-----
Confidence 3477888999999999999999999988887776665 689999999999999999999864321110 00
Q ss_pred cCCCccceEEeCC------CCCC-C-HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------HHHHHHHHHHhhC
Q 036794 488 DRGKSRNIKEVGP------VGNF-D-FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------DSWSAISKVVDRA 551 (1152)
Q Consensus 488 ~~g~~~dviEIda------as~~-~-vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------eaqnaLLklLEep 551 (1152)
...++.++. .... . ...++.+++.+... ....||||||+|.+.. ++.+.|+.+|+.
T Consensus 243 ----~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~---~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~- 314 (852)
T TIGR03345 243 ----NVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKAS---PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR- 314 (852)
T ss_pred ----CCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhc---CCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-
Confidence 001222211 1111 1 25677888877533 3567999999999953 234567788875
Q ss_pred CCCEEEEEEcCCCC-----cchHHHHccceEEEecCCChhHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCC----
Q 036794 552 PRRVVFILVSSSLD-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK----EGIEIDKDALKLIASRSDGS---- 618 (1152)
Q Consensus 552 p~~VifILaTN~~d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk----eGl~Id~dALelLAe~s~GD---- 618 (1152)
..+.+|.+|+..+ .++++|.+||+.|.|++|+.++...+|+.+... .++.|+++|+..++..+.+-
T Consensus 315 -G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r 393 (852)
T TIGR03345 315 -GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGR 393 (852)
T ss_pred -CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccc
Confidence 6899999998632 378899999999999999999999997666543 46889999999999987643
Q ss_pred --HHHHHHHHHHHHH
Q 036794 619 --LRDAEMTLEQLSL 631 (1152)
Q Consensus 619 --LR~Ain~LEkLsL 631 (1152)
+..++.+|+.++.
T Consensus 394 ~LPDKAIdlldea~a 408 (852)
T TIGR03345 394 QLPDKAVSLLDTACA 408 (852)
T ss_pred cCccHHHHHHHHHHH
Confidence 4478889988754
No 130
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.53 E-value=2.3e-13 Score=161.11 Aligned_cols=206 Identities=17% Similarity=0.184 Sum_probs=141.1
Q ss_pred CcCccc-Cc--HHHHHHHHHHHHh-----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCC
Q 036794 419 TFRDLV-GQ--NLVAQALSNAVMR-----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490 (1152)
Q Consensus 419 sFddLV-GQ--e~v~q~Lk~aL~~-----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g 490 (1152)
+|++++ |. ..+...+..+... +...+.++||||+|+|||++++++++++.+...
T Consensus 109 tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~------------------ 170 (445)
T PRK12422 109 TFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGG------------------ 170 (445)
T ss_pred cccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCC------------------
Confidence 699977 53 3344555555432 223356899999999999999999999864311
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHH--H-hhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhC-CCCEEEEEEcCCC
Q 036794 491 KSRNIKEVGPVGNFDFESILDLLDN--M-VTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDRA-PRRVVFILVSSSL 564 (1152)
Q Consensus 491 ~~~dviEIdaas~~~vdeIreLle~--a-~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEep-p~~VifILaTN~~ 564 (1152)
.+..+.... + ...+...+.. . ..........+|+|||++.+.. ..+..|+.+++.. .....+|++++.+
T Consensus 171 ---~v~yi~~~~-f-~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~ 245 (445)
T PRK12422 171 ---KILYVRSEL-F-TEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCA 245 (445)
T ss_pred ---CEEEeeHHH-H-HHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCC
Confidence 022221100 0 0011111100 0 0001113457999999999864 3566677666531 1234667777653
Q ss_pred ----CcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH---Hh--
Q 036794 565 ----DALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLS---LL-- 632 (1152)
Q Consensus 565 ----dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLs---Ll-- 632 (1152)
..+.+.|.+|+. .+.+.+|+.+++..+|+..++..++.++++++++|+....+|+|++++.|+.++ .+
T Consensus 246 p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~ 325 (445)
T PRK12422 246 PQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKK 325 (445)
T ss_pred HHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 246788999994 799999999999999999999999999999999999999999999999999984 23
Q ss_pred --CCCCCHHHHHHHHhc
Q 036794 633 --GQRISVPLVQELVGL 647 (1152)
Q Consensus 633 --g~~IT~EdV~elVg~ 647 (1152)
+..||.+++++++..
T Consensus 326 ~~~~~i~~~~~~~~l~~ 342 (445)
T PRK12422 326 LSHQLLYVDDIKALLHD 342 (445)
T ss_pred hhCCCCCHHHHHHHHHH
Confidence 456999999988864
No 131
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.53 E-value=4.7e-13 Score=156.63 Aligned_cols=226 Identities=18% Similarity=0.246 Sum_probs=152.3
Q ss_pred ccccccccchhhhhCCCCcCcccCcHHHHHHHHHHHH-----hCCCC-cEEEEEcCCCchHHHHHHHHHHHHcccCCCCC
Q 036794 402 DNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVM-----RRKVG-LLYVFYGPHGTGKTSCARIFARALNCQSLEQP 475 (1152)
Q Consensus 402 ~~~~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~-----~gri~-~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~ 475 (1152)
.......++|++||+|.+.++|.-+..-+..++.|++ ..+.+ ..+||+||+|+||||+++.|+++++....++.
T Consensus 63 ~~~~d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 63 NEKEDEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred CCCccccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 3444567899999999999999999999999999988 33333 58899999999999999999999999877776
Q ss_pred CCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhh--------CCCCCCceEEEEeCCCCCCHH-----HHH
Q 036794 476 KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVT--------SRPPSQYRIFVFDDCDTLSPD-----SWS 542 (1152)
Q Consensus 476 epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~--------~P~~a~~kVVIIDEID~Ls~e-----aqn 542 (1152)
.|...- ....-.....+..++ -......+...+..+.. .-....+++|+|||+...... .++
T Consensus 143 Npi~~~----~~~~~h~~t~~~~~~-~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~e 217 (634)
T KOG1970|consen 143 NPINLK----EPENLHNETSFLMFP-YQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFRE 217 (634)
T ss_pred CCcccc----ccccccccchhcccc-hhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHH
Confidence 554311 110000000000001 01122333333333311 111245679999998776432 234
Q ss_pred HHHHHHhhCCCCEEEEEEcC------CCC-cchHHHHc--cceEEEecCCChhHHHHHHHHHHHHcCCCCC------HHH
Q 036794 543 AISKVVDRAPRRVVFILVSS------SLD-ALPHIIIS--RCQKFFFPKMKDADIIYTLQWIASKEGIEID------KDA 607 (1152)
Q Consensus 543 aLLklLEepp~~VifILaTN------~~d-kL~~aL~S--R~qvI~F~~p~~~EI~eiL~~iakkeGl~Id------~dA 607 (1152)
.|..+...+...++||++-. +.+ .++..+.. |...|.|+|+.+.-+.+.|..+|..++.... ...
T Consensus 218 vL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~ 297 (634)
T KOG1970|consen 218 VLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAE 297 (634)
T ss_pred HHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHH
Confidence 55555555555566666531 112 34554544 4557999999999999999999999877766 567
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHh
Q 036794 608 LKLIASRSDGSLRDAEMTLEQLSLL 632 (1152)
Q Consensus 608 LelLAe~s~GDLR~Ain~LEkLsLl 632 (1152)
++.++..++||+|.|++.|+..+..
T Consensus 298 v~~i~~~s~GDIRsAInsLQlsssk 322 (634)
T KOG1970|consen 298 VELICQGSGGDIRSAINSLQLSSSK 322 (634)
T ss_pred HHHHHHhcCccHHHHHhHhhhhccc
Confidence 8999999999999999999987643
No 132
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.52 E-value=1.2e-13 Score=175.01 Aligned_cols=221 Identities=19% Similarity=0.261 Sum_probs=150.7
Q ss_pred ccccccccccccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCC--------CCcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 396 GQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRK--------VGLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 396 ~~~~l~~~~~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gr--------i~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+...+..........+.... -..|+||+.++..+..++.... ....|||+||+|||||++|++||+.+
T Consensus 544 p~~~~~~~e~~~l~~l~~~l----~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 544 PVSKMLEGEREKLLHMEEVL----HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred CcccccHHHHHHHHHHHHHh----hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 33344333333333444443 3679999999999999997632 23579999999999999999999998
Q ss_pred cccCCCCCCCCCCCCccccccCCCccceEEe-CCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHH
Q 036794 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEV-GPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISK 546 (1152)
Q Consensus 468 ~~~~~e~~epcg~c~~c~~i~~g~~~dviEI-daas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLk 546 (1152)
.+... +|..+ .|..+.. .......+ .+.++++.++...+.+.+...| +.||||||++.++++.++.|++
T Consensus 620 ~~~~~----~~i~~-d~s~~~~-~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p----~~vlllDeieka~~~v~~~Ll~ 689 (852)
T TIGR03346 620 FDDED----AMVRI-DMSEYME-KHSVARLIGAPPGYVGYEEGGQLTEAVRRKP----YSVVLFDEVEKAHPDVFNVLLQ 689 (852)
T ss_pred cCCCC----cEEEE-echhhcc-cchHHHhcCCCCCccCcccccHHHHHHHcCC----CcEEEEeccccCCHHHHHHHHH
Confidence 75421 11111 1111111 00000111 1234455555555656655544 4799999999999999999999
Q ss_pred HHhhC-----------CCCEEEEEEcCCCC-------------------------cchHHHHccce-EEEecCCChhHHH
Q 036794 547 VVDRA-----------PRRVVFILVSSSLD-------------------------ALPHIIISRCQ-KFFFPKMKDADII 589 (1152)
Q Consensus 547 lLEep-----------p~~VifILaTN~~d-------------------------kL~~aL~SR~q-vI~F~~p~~~EI~ 589 (1152)
+|++. -.+++||++||-.. .+.+.|+.|+. ++.|.|++.+++.
T Consensus 690 ~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~ 769 (852)
T TIGR03346 690 VLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIA 769 (852)
T ss_pred HHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHH
Confidence 99874 25788999988511 14466888985 7899999999888
Q ss_pred HHHHHHHH-------HcC--CCCCHHHHHHHHHh-c--CCCHHHHHHHHHHHH
Q 036794 590 YTLQWIAS-------KEG--IEIDKDALKLIASR-S--DGSLRDAEMTLEQLS 630 (1152)
Q Consensus 590 eiL~~iak-------keG--l~Id~dALelLAe~-s--~GDLR~Ain~LEkLs 630 (1152)
+++...+. ..+ +.++++++++|+.+ | .++.|.+.+.+++..
T Consensus 770 ~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 770 RIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 87665443 233 56899999999998 5 689999999998864
No 133
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.52 E-value=2.6e-13 Score=169.74 Aligned_cols=191 Identities=19% Similarity=0.246 Sum_probs=136.5
Q ss_pred CCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 417 PRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 417 P~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
..+|+++.|.+.+++.|.+.+.. -+.+.++|||||||||||++|+++|+++++.+....
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~--------- 519 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVR--------- 519 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe---------
Confidence 34799999999999999887752 244568999999999999999999999875421110
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH------------HHHHHHHHHHhh--
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP------------DSWSAISKVVDR-- 550 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~------------eaqnaLLklLEe-- 550 (1152)
. .++.. .........++.++..+... .+.||||||+|.+.. ...+.|+..|+.
T Consensus 520 ----~---~~l~~--~~vGese~~i~~~f~~A~~~----~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~ 586 (733)
T TIGR01243 520 ----G---PEILS--KWVGESEKAIREIFRKARQA----APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ 586 (733)
T ss_pred ----h---HHHhh--cccCcHHHHHHHHHHHHHhc----CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc
Confidence 0 00000 00111234577788776543 358999999998732 245678888874
Q ss_pred CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHH
Q 036794 551 APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-SLRDAEMT 625 (1152)
Q Consensus 551 pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-DLR~Ain~ 625 (1152)
...+++||++||.++.+++++++ ||. .+.|+.|+.+++.++++...+. ..++++ .+..|+..+.| +..++.++
T Consensus 587 ~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~--~~~~~~~~l~~la~~t~g~sgadi~~~ 664 (733)
T TIGR01243 587 ELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS--MPLAEDVDLEELAEMTEGYTGADIEAV 664 (733)
T ss_pred CCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHHcCCCCHHHHHHH
Confidence 45789999999999999999986 887 5889999999999998766544 444433 47888888776 55666666
Q ss_pred HHHHHH
Q 036794 626 LEQLSL 631 (1152)
Q Consensus 626 LEkLsL 631 (1152)
+..+++
T Consensus 665 ~~~A~~ 670 (733)
T TIGR01243 665 CREAAM 670 (733)
T ss_pred HHHHHH
Confidence 666544
No 134
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.52 E-value=2e-13 Score=157.50 Aligned_cols=209 Identities=16% Similarity=0.149 Sum_probs=138.4
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHhC------------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMRR------------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~g------------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
...+|++|.|.+..++.|..++... ..+.++|||||||||||++|+++|+.+........
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~-------- 188 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV-------- 188 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc--------
Confidence 3447899999999999999887531 33567999999999999999999998765421110
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhh--
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PDSWSAISKVVDR-- 550 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~eaqnaLLklLEe-- 550 (1152)
+..+ . ..........+++++..+.. ....||||||+|.+. ...+..|..++.+
T Consensus 189 ~~~l--------~--~~~~g~~~~~i~~~f~~a~~----~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld 254 (364)
T TIGR01242 189 GSEL--------V--RKYIGEGARLVREIFELAKE----KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELD 254 (364)
T ss_pred hHHH--------H--HHhhhHHHHHHHHHHHHHHh----cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhh
Confidence 0000 0 00000112334555554432 234699999999873 2234455555543
Q ss_pred ---CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHH
Q 036794 551 ---APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAE 623 (1152)
Q Consensus 551 ---pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ai 623 (1152)
...++.||++||.++.+++++++ |+. .|.|+.|+.++..++++.++....+.- +..+..|+..+.| +.+++.
T Consensus 255 ~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~~~~la~~t~g~sg~dl~ 333 (364)
T TIGR01242 255 GFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVDLEAIAKMTEGASGADLK 333 (364)
T ss_pred CCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCCHHHHHHHcCCCCHHHHH
Confidence 24589999999999999999986 555 589999999999999988775544321 1236667777665 445555
Q ss_pred HHHHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 624 MTLEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 624 n~LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
+++..+... ...|+.+|+.+++..
T Consensus 334 ~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 334 AICTEAGMFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 555555332 235899888887754
No 135
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.52 E-value=2.9e-13 Score=154.66 Aligned_cols=206 Identities=13% Similarity=0.103 Sum_probs=133.5
Q ss_pred ccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cceEEeCC
Q 036794 423 LVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNIKEVGP 500 (1152)
Q Consensus 423 LVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dviEIda 500 (1152)
|+|++..++.+...+.. ......+||+|++||||+++|++|+........ |+. ..+|..+..... ..++....
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~----pfv-~vnc~~~~~~~l~~~lfG~~~ 75 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQG----PLV-KLNCAALSENLLDSELFGHEA 75 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCC----CeE-EEeCCCCChHHHHHHHhcccc
Confidence 57888888777766655 444556999999999999999999986543221 211 122322211000 00000000
Q ss_pred CCCCCHHH-HHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCCC----
Q 036794 501 VGNFDFES-ILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSSL---- 564 (1152)
Q Consensus 501 as~~~vde-IreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~~---- 564 (1152)
....+... -..+ ...+..++|||||++.|+...|..|+.+|++. +.++++|++|+..
T Consensus 76 g~~~ga~~~~~G~-------~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~ 148 (329)
T TIGR02974 76 GAFTGAQKRHQGR-------FERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPAL 148 (329)
T ss_pred ccccCcccccCCc-------hhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHH
Confidence 00000000 0001 11256789999999999999999999999873 2578999998742
Q ss_pred ---CcchHHHHccceE--EEecCCC--hhHHHHHHHHH----HHHcC----CCCCHHHHHHHHHh-cCCCHHHHHHHHHH
Q 036794 565 ---DALPHIIISRCQK--FFFPKMK--DADIIYTLQWI----ASKEG----IEIDKDALKLIASR-SDGSLRDAEMTLEQ 628 (1152)
Q Consensus 565 ---dkL~~aL~SR~qv--I~F~~p~--~~EI~eiL~~i----akkeG----l~Id~dALelLAe~-s~GDLR~Ain~LEk 628 (1152)
..+.+.|..|+.. |.++++. .+|+..++..+ +.+.| ..+++++++.|..+ |+||+|++.|.+++
T Consensus 149 ~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~ 228 (329)
T TIGR02974 149 AAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVER 228 (329)
T ss_pred hhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 2467789999864 6666665 34565554443 33334 35899999999999 99999999999999
Q ss_pred HHHhC--CCCCHHH
Q 036794 629 LSLLG--QRISVPL 640 (1152)
Q Consensus 629 LsLlg--~~IT~Ed 640 (1152)
++... +.|+.++
T Consensus 229 ~~~~~~~~~~~~~~ 242 (329)
T TIGR02974 229 SVYRHGLEEAPIDE 242 (329)
T ss_pred HHHhCCCCccchhh
Confidence 98764 4566655
No 136
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.52 E-value=5e-13 Score=159.66 Aligned_cols=186 Identities=18% Similarity=0.178 Sum_probs=125.1
Q ss_pred hhhhCCCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCC
Q 036794 412 TQKYMPRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCG 479 (1152)
Q Consensus 412 ~eKyRP~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg 479 (1152)
.+++.+.+|++|.|.+..++.+..++.. -..+..+|||||||||||++|+++|+++........ +
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~---~ 249 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAET---G 249 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcccccccc---C
Confidence 3456667899999999999999888753 134568999999999999999999999865421100 0
Q ss_pred CCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH------------HHHHHHHH
Q 036794 480 FCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD------------SWSAISKV 547 (1152)
Q Consensus 480 ~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e------------aqnaLLkl 547 (1152)
. ..++ + .-...++. ..........++.+++.+......+.+.||||||+|.+... ..+.|+..
T Consensus 250 ~-~~~f-l-~v~~~eLl--~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 250 D-KSYF-L-NIKGPELL--NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred C-ceeE-E-eccchhhc--ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 0 0000 0 00000000 00111123456677776654433345689999999987321 23567777
Q ss_pred HhhCC--CCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH
Q 036794 548 VDRAP--RRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD 606 (1152)
Q Consensus 548 LEepp--~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d 606 (1152)
|+... .+++||++||.++.|+++|++ |+. .|.|++|+.+++.++++.++.. .+.++++
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~~~ 387 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLDAD 387 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCchHH
Confidence 76533 589999999999999999998 776 4999999999999999988764 3455444
No 137
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.52 E-value=8.4e-13 Score=150.59 Aligned_cols=210 Identities=12% Similarity=0.131 Sum_probs=135.7
Q ss_pred cCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCC-ccceEE
Q 036794 420 FRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK-SRNIKE 497 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~-~~dviE 497 (1152)
|++++|.+..++.+.+.+.. ......+||+|++||||+++|++|+....... .|+ +..+|..+.... ...++.
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~----~pf-v~v~c~~~~~~~~~~~lfg 79 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ----GPF-ISLNCAALNENLLDSELFG 79 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccC----CCe-EEEeCCCCCHHHHHHHHcc
Confidence 78999999888888776655 44455699999999999999999997544221 111 122333321110 000110
Q ss_pred eCCCCCCCHH-HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-----------CCEEEEEEcCCC-
Q 036794 498 VGPVGNFDFE-SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-----------RRVVFILVSSSL- 564 (1152)
Q Consensus 498 Idaas~~~vd-eIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-----------~~VifILaTN~~- 564 (1152)
.......+.. ....++ ..+..++|||||++.|+...|..|+.+|++.. .+++||++|+..
T Consensus 80 ~~~~~~~g~~~~~~g~l-------~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l 152 (326)
T PRK11608 80 HEAGAFTGAQKRHPGRF-------ERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADL 152 (326)
T ss_pred ccccccCCcccccCCch-------hccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhH
Confidence 0000000000 000111 12556899999999999999999999998621 368888888642
Q ss_pred ------CcchHHHHccce--EEEecCCCh--hHHHHHHHHH----HHHcC----CCCCHHHHHHHHHh-cCCCHHHHHHH
Q 036794 565 ------DALPHIIISRCQ--KFFFPKMKD--ADIIYTLQWI----ASKEG----IEIDKDALKLIASR-SDGSLRDAEMT 625 (1152)
Q Consensus 565 ------dkL~~aL~SR~q--vI~F~~p~~--~EI~eiL~~i----akkeG----l~Id~dALelLAe~-s~GDLR~Ain~ 625 (1152)
..+.+.|..|+. .|.++++.. +|+..++..+ +.+.+ ..+++++++.|..+ |+||+|++.|.
T Consensus 153 ~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~v 232 (326)
T PRK11608 153 PAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNV 232 (326)
T ss_pred HHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHH
Confidence 246678999986 466666654 3555544443 44444 35899999999999 99999999999
Q ss_pred HHHHHHhC--CCCCHHHH
Q 036794 626 LEQLSLLG--QRISVPLV 641 (1152)
Q Consensus 626 LEkLsLlg--~~IT~EdV 641 (1152)
+++++... ..|+.+++
T Consensus 233 l~~a~~~~~~~~~~~~~l 250 (326)
T PRK11608 233 VERSVYRHGTSEYPLDNI 250 (326)
T ss_pred HHHHHHhcCCCCCchhhc
Confidence 99987763 34655543
No 138
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.52 E-value=1.5e-13 Score=172.75 Aligned_cols=196 Identities=22% Similarity=0.331 Sum_probs=132.5
Q ss_pred CcccCcHHHHHHHHHHHHhC-----CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccce
Q 036794 421 RDLVGQNLVAQALSNAVMRR-----KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNI 495 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~g-----ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dv 495 (1152)
++++|++.+++.+.+++... ..++.+||+||||||||++|++||+.++....... ++.-.....+ .+.. .
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~--~~~~~~~~~i-~g~~--~ 394 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFS--LGGVRDEAEI-RGHR--R 394 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEe--CCCcccHHHH-cCCC--C
Confidence 45889999999988765421 22347999999999999999999999975532211 0000000000 0000 0
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH----HHHHHHHHHhhC---------------CCCEE
Q 036794 496 KEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD----SWSAISKVVDRA---------------PRRVV 556 (1152)
Q Consensus 496 iEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e----aqnaLLklLEep---------------p~~Vi 556 (1152)
..++ .....+.+.+..+. ....||||||||.+... ..++|+.+|+.. ..+++
T Consensus 395 ~~~g----~~~g~i~~~l~~~~-----~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 395 TYVG----AMPGRIIQGLKKAK-----TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred ceeC----CCCchHHHHHHHhC-----cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 0111 11233444444332 22349999999999753 357899988740 14789
Q ss_pred EEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHhcC--CCHHHHHH
Q 036794 557 FILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIA-----SKE-----GIEIDKDALKLIASRSD--GSLRDAEM 624 (1152)
Q Consensus 557 fILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~ia-----kke-----Gl~Id~dALelLAe~s~--GDLR~Ain 624 (1152)
||++||..+.++++|++||.+|.|++++.++...+++..+ +.. ++.++++++..|++.+. ..+|.+..
T Consensus 466 ~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r 545 (775)
T TIGR00763 466 FIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLER 545 (775)
T ss_pred EEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHH
Confidence 9999999999999999999999999999999888876654 222 45799999999998743 46777777
Q ss_pred HHHHHH
Q 036794 625 TLEQLS 630 (1152)
Q Consensus 625 ~LEkLs 630 (1152)
.+++++
T Consensus 546 ~i~~~~ 551 (775)
T TIGR00763 546 QIEKIC 551 (775)
T ss_pred HHHHHH
Confidence 776653
No 139
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.52 E-value=6.9e-13 Score=157.30 Aligned_cols=206 Identities=15% Similarity=0.224 Sum_probs=141.8
Q ss_pred CCCcCccc-Cc--HHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc
Q 036794 417 PRTFRDLV-GQ--NLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS 492 (1152)
Q Consensus 417 P~sFddLV-GQ--e~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~ 492 (1152)
+.+|+.++ |. ..+...+...... +...+.++|||++|+|||++++++++++.......
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~------------------ 172 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDL------------------ 172 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCC------------------
Confidence 35799977 43 3355555555443 33335688999999999999999999875321111
Q ss_pred cceEEeCCCCCC-C-H-------HHHHHHHHHHhhCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhC-CCCEEEEEE
Q 036794 493 RNIKEVGPVGNF-D-F-------ESILDLLDNMVTSRPPSQYRIFVFDDCDTLS--PDSWSAISKVVDRA-PRRVVFILV 560 (1152)
Q Consensus 493 ~dviEIdaas~~-~-v-------deIreLle~a~~~P~~a~~kVVIIDEID~Ls--~eaqnaLLklLEep-p~~VifILa 560 (1152)
.+..+.+..-. . . +.+.++.+.. ....+|+|||++.+. ...++.|+.+++.. ...-.+|++
T Consensus 173 -~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~------~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIlt 245 (450)
T PRK14087 173 -KVSYMSGDEFARKAVDILQKTHKEIEQFKNEI------CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFS 245 (450)
T ss_pred -eEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh------ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 01222110000 0 0 1111111111 344799999999987 45667777777652 223356777
Q ss_pred cCCCC----cchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036794 561 SSSLD----ALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGI--EIDKDALKLIASRSDGSLRDAEMTLEQLSL 631 (1152)
Q Consensus 561 TN~~d----kL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl--~Id~dALelLAe~s~GDLR~Ain~LEkLsL 631 (1152)
++.+. .+.+.|.+|+. .+.+.+|+.+++.++|+..++..|+ .++++++++|+..+.||+|.+.+.|.++..
T Consensus 246 sd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~ 325 (450)
T PRK14087 246 SDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNF 325 (450)
T ss_pred CCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 76542 35678999987 6999999999999999999998886 699999999999999999999999999853
Q ss_pred h---C---CCCCHHHHHHHHhc
Q 036794 632 L---G---QRISVPLVQELVGL 647 (1152)
Q Consensus 632 l---g---~~IT~EdV~elVg~ 647 (1152)
+ . ..||.+.|.+++..
T Consensus 326 ~a~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 326 WSQQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred HHhcccCCCCCCHHHHHHHHhh
Confidence 3 2 46999999998864
No 140
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.51 E-value=4.7e-13 Score=150.08 Aligned_cols=122 Identities=20% Similarity=0.296 Sum_probs=105.4
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCC------------CCcchHHHHccceEEEecCCChhHHHHHH
Q 036794 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSS------------LDALPHIIISRCQKFFFPKMKDADIIYTL 592 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~------------~dkL~~aL~SR~qvI~F~~p~~~EI~eiL 592 (1152)
++|+||||+|+|.-++|..|.+.||+. --.++|++||. |+-+|..|+.|+.+|...|++.+++.++|
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse-~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi 370 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESE-LAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII 370 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhcc-cCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHH
Confidence 579999999999999999999999984 34467788873 56799999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHh-cCCCHHHHHHHHHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 593 QWIASKEGIEIDKDALKLIASR-SDGSLRDAEMTLEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 593 ~~iakkeGl~Id~dALelLAe~-s~GDLR~Ain~LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
+.+++.+++.++++|+++|+.. ...++|.++++|.-+... .+.|..+||..+-..
T Consensus 371 ~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 371 RIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred HHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 9999999999999999999999 556999999999865333 346899998877543
No 141
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=2e-12 Score=156.41 Aligned_cols=209 Identities=18% Similarity=0.168 Sum_probs=141.8
Q ss_pred hhhhhCCCCcCccc-Cc--HHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 411 LTQKYMPRTFRDLV-GQ--NLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 411 l~eKyRP~sFddLV-GQ--e~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
+..+| +|++|+ |. ..+...+...+.. +...+.++|||++|+|||+|+++|++++.......
T Consensus 281 L~~~~---TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~------------ 345 (617)
T PRK14086 281 LNPKY---TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGT------------ 345 (617)
T ss_pred CCCCC---CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCC------------
Confidence 33455 699977 43 2344445554443 23334589999999999999999999875321100
Q ss_pred ccCCCccceEEeCCCCCC-C-HH-----HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhhCC-CCEE
Q 036794 487 HDRGKSRNIKEVGPVGNF-D-FE-----SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD--SWSAISKVVDRAP-RRVV 556 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~-~-vd-----eIreLle~a~~~P~~a~~kVVIIDEID~Ls~e--aqnaLLklLEepp-~~Vi 556 (1152)
.++++...... . .. .+..+.+. .....+|||||++.+... .+..|+.+++... .+..
T Consensus 346 -------~V~Yitaeef~~el~~al~~~~~~~f~~~------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~ 412 (617)
T PRK14086 346 -------RVRYVSSEEFTNEFINSIRDGKGDSFRRR------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQ 412 (617)
T ss_pred -------eEEEeeHHHHHHHHHHHHHhccHHHHHHH------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCC
Confidence 02222110000 0 00 00011111 123479999999998543 3566777766522 2344
Q ss_pred EEEEcCCC----CcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 036794 557 FILVSSSL----DALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL 629 (1152)
Q Consensus 557 fILaTN~~----dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkL 629 (1152)
+|++++.. ..+.+.|.+|+. .+.+.+|+.+.+..+|+..+...++.++++++++|+.+..+|+|.+...|.++
T Consensus 413 IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL 492 (617)
T PRK14086 413 IVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRV 492 (617)
T ss_pred EEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 66677653 347778999987 68999999999999999999999999999999999999999999999999998
Q ss_pred HHh----CCCCCHHHHHHHHhc
Q 036794 630 SLL----GQRISVPLVQELVGL 647 (1152)
Q Consensus 630 sLl----g~~IT~EdV~elVg~ 647 (1152)
..+ +..||.+.+.+++..
T Consensus 493 ~a~a~~~~~~itl~la~~vL~~ 514 (617)
T PRK14086 493 TAFASLNRQPVDLGLTEIVLRD 514 (617)
T ss_pred HHHHHhhCCCCCHHHHHHHHHH
Confidence 544 456999998888853
No 142
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.51 E-value=8.9e-14 Score=160.91 Aligned_cols=205 Identities=18% Similarity=0.274 Sum_probs=134.9
Q ss_pred CCcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCcc-ce
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSR-NI 495 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~-dv 495 (1152)
..|.+|||.+...+.+.+.++. ......+|++|++||||+.+|+.|+...... ...|+ ...+|..+..+-.. .+
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~---~~~PF-I~~NCa~~~en~~~~eL 150 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARR---AEAPF-IAFNCAAYSENLQEAEL 150 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcc---cCCCE-EEEEHHHhCcCHHHHHH
Confidence 3589999999888888777766 3444579999999999999999999433221 12222 22344444322110 01
Q ss_pred EEeCCCCCCCH-HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-----------CCCCEEEEEEcCC
Q 036794 496 KEVGPVGNFDF-ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-----------APRRVVFILVSSS 563 (1152)
Q Consensus 496 iEIdaas~~~v-deIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-----------pp~~VifILaTN~ 563 (1152)
|-......++. ..-..+++. +.++++|+||++.|++..|..|+++||+ .+.+|.+|++|+.
T Consensus 151 FG~~kGaftGa~~~k~Glfe~-------A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~ 223 (403)
T COG1221 151 FGHEKGAFTGAQGGKAGLFEQ-------ANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTE 223 (403)
T ss_pred hccccceeecccCCcCchhee-------cCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeecccc
Confidence 11000000010 000112222 5678999999999999999999999998 5679999999985
Q ss_pred C--CcchH--HHHccceE--EEecCCChh--HHHH----HHHHHHHHcCCC---CCHHHHHHHHHh-cCCCHHHHHHHHH
Q 036794 564 L--DALPH--IIISRCQK--FFFPKMKDA--DIIY----TLQWIASKEGIE---IDKDALKLIASR-SDGSLRDAEMTLE 627 (1152)
Q Consensus 564 ~--dkL~~--aL~SR~qv--I~F~~p~~~--EI~e----iL~~iakkeGl~---Id~dALelLAe~-s~GDLR~Ain~LE 627 (1152)
. +.+.. ++..|+.. |.++++.++ |+.. ++...+++.+.+ .+++++..|..| |+||+|++.|.++
T Consensus 224 ~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve 303 (403)
T COG1221 224 DLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVE 303 (403)
T ss_pred CHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHH
Confidence 4 34555 78887664 666665443 4444 344455555654 346888888888 9999999999999
Q ss_pred HHHHhC
Q 036794 628 QLSLLG 633 (1152)
Q Consensus 628 kLsLlg 633 (1152)
.+++..
T Consensus 304 ~~~~~~ 309 (403)
T COG1221 304 RAVAQA 309 (403)
T ss_pred HHHHHh
Confidence 987663
No 143
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.51 E-value=6.5e-13 Score=159.83 Aligned_cols=202 Identities=15% Similarity=0.172 Sum_probs=133.5
Q ss_pred CcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCC-ccceE
Q 036794 419 TFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK-SRNIK 496 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~-~~dvi 496 (1152)
.+.+++|++..++.+.+.+.. +.....+||+|++||||+++|++|+....... .|+ ...+|..+.... ...++
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~----~p~-v~v~c~~~~~~~~e~~lf 259 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRAD----KPL-VYLNCAALPESLAESELF 259 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCC----CCe-EEEEcccCChHHHHHHhc
Confidence 578999999999888877766 45556799999999999999999998754321 121 112233331100 00000
Q ss_pred EeCCCCCCCH-HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCCC
Q 036794 497 EVGPVGNFDF-ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSSL 564 (1152)
Q Consensus 497 EIdaas~~~v-deIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~~ 564 (1152)
........+. ......++ .+.+++|||||++.|+...|..|+++|++. +.++.+|++|+..
T Consensus 260 G~~~g~~~ga~~~~~g~~~-------~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 260 GHVKGAFTGAISNRSGKFE-------LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred CccccccCCCcccCCcchh-------hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 0000000000 00000111 255689999999999999999999999872 2378999999753
Q ss_pred -------CcchHHHHccceE--EEecCCCh--hHHHHHHH----HHHHHcC---CCCCHHHHHHHHHh-cCCCHHHHHHH
Q 036794 565 -------DALPHIIISRCQK--FFFPKMKD--ADIIYTLQ----WIASKEG---IEIDKDALKLIASR-SDGSLRDAEMT 625 (1152)
Q Consensus 565 -------dkL~~aL~SR~qv--I~F~~p~~--~EI~eiL~----~iakkeG---l~Id~dALelLAe~-s~GDLR~Ain~ 625 (1152)
..+.+.|..|+.. |.++++.. +|+..++. ..+.+.| +.+++++++.|..+ |+||+|++.|.
T Consensus 333 l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~ 412 (509)
T PRK05022 333 LREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHV 412 (509)
T ss_pred HHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHH
Confidence 2477788899876 45555543 34444433 3333333 56999999999999 99999999999
Q ss_pred HHHHHHh
Q 036794 626 LEQLSLL 632 (1152)
Q Consensus 626 LEkLsLl 632 (1152)
+++++..
T Consensus 413 i~ra~~~ 419 (509)
T PRK05022 413 ISRAALL 419 (509)
T ss_pred HHHHHHh
Confidence 9998776
No 144
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.51 E-value=6.1e-13 Score=163.98 Aligned_cols=213 Identities=17% Similarity=0.174 Sum_probs=139.6
Q ss_pred CCcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cce
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNI 495 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dv 495 (1152)
.+|++++|.+..++.+...++. ......+||+|++||||+++|++|+........ |+ ...+|..+..... ..+
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~----pf-v~vnc~~~~~~~~~~el 396 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAG----PY-IAVNCQLYPDEALAEEF 396 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCC----Ce-EEEECCCCChHHHHHHh
Confidence 3699999998888777655544 444556999999999999999999987653221 21 1122333211000 000
Q ss_pred EEeC-CCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-----------CCEEEEEEcCC
Q 036794 496 KEVG-PVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-----------RRVVFILVSSS 563 (1152)
Q Consensus 496 iEId-aas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-----------~~VifILaTN~ 563 (1152)
+... .....+. ...+ ..+.+++||||||+.|+...|..|+++|++.. .++.+|++|+.
T Consensus 397 fg~~~~~~~~~~---~g~~-------~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 397 LGSDRTDSENGR---LSKF-------ELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred cCCCCcCccCCC---CCce-------eECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 0000 0000000 0000 02567899999999999999999999998731 26788888874
Q ss_pred C-------CcchHHHHccceE--EEecCCChh--HHHHHHHHHHH----Hc--CCCCCHHHHHHHHHh-cCCCHHHHHHH
Q 036794 564 L-------DALPHIIISRCQK--FFFPKMKDA--DIIYTLQWIAS----KE--GIEIDKDALKLIASR-SDGSLRDAEMT 625 (1152)
Q Consensus 564 ~-------dkL~~aL~SR~qv--I~F~~p~~~--EI~eiL~~iak----ke--Gl~Id~dALelLAe~-s~GDLR~Ain~ 625 (1152)
. ..+.+.|..|+.. |.+|++... |+..++..++. +. .+.+++++++.|..+ |+||+|++.|.
T Consensus 467 ~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~ 546 (638)
T PRK11388 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSV 546 (638)
T ss_pred CHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHH
Confidence 3 2466778888875 555555443 45544444443 22 246899999999999 89999999999
Q ss_pred HHHHHHh--CCCCCHHHHHHHH
Q 036794 626 LEQLSLL--GQRISVPLVQELV 645 (1152)
Q Consensus 626 LEkLsLl--g~~IT~EdV~elV 645 (1152)
|+.++.. +..|+.+++...+
T Consensus 547 l~~~~~~~~~~~i~~~~lp~~~ 568 (638)
T PRK11388 547 IENLALSSDNGRIRLSDLPEHL 568 (638)
T ss_pred HHHHHHhCCCCeecHHHCchhh
Confidence 9998765 3458888877655
No 145
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.50 E-value=1.7e-12 Score=156.64 Aligned_cols=212 Identities=14% Similarity=0.184 Sum_probs=139.0
Q ss_pred CCcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cce
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNI 495 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dv 495 (1152)
..|++++|.+..++.+...+++ ......+||+|++||||+++|++++....... .|+. ..+|..+..... ..+
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~----~pfv-~inca~~~~~~~e~el 275 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGK----KPFL-ALNCASIPDDVVESEL 275 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCC----CCeE-EeccccCCHHHHHHHh
Confidence 3799999999888877766653 55566799999999999999999987654321 1221 223333321000 000
Q ss_pred EEeCCCCCCCH-HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCC
Q 036794 496 KEVGPVGNFDF-ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSS 563 (1152)
Q Consensus 496 iEIdaas~~~v-deIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~ 563 (1152)
+...+....+. ..-..+++. +..++|||||++.|+...|..|+++|++. +.++.||++|+.
T Consensus 276 FG~~~~~~~~~~~~~~g~~e~-------a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~ 348 (520)
T PRK10820 276 FGHAPGAYPNALEGKKGFFEQ-------ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK 348 (520)
T ss_pred cCCCCCCcCCcccCCCChhhh-------cCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCC
Confidence 10000000000 000011111 45689999999999999999999999872 246788888864
Q ss_pred C-------CcchHHHHccceE--EEecCCChh--HHHHH----HHHHHHHcCC---CCCHHHHHHHHHh-cCCCHHHHHH
Q 036794 564 L-------DALPHIIISRCQK--FFFPKMKDA--DIIYT----LQWIASKEGI---EIDKDALKLIASR-SDGSLRDAEM 624 (1152)
Q Consensus 564 ~-------dkL~~aL~SR~qv--I~F~~p~~~--EI~ei----L~~iakkeGl---~Id~dALelLAe~-s~GDLR~Ain 624 (1152)
. ..+.+.|..|+.. |.++++.+. ++..+ +...+.+.|. .+++++++.|..+ |+||+|++.|
T Consensus 349 ~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~n 428 (520)
T PRK10820 349 NLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKN 428 (520)
T ss_pred CHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHH
Confidence 3 1356778999765 556665442 44433 4444555554 6899999999999 9999999999
Q ss_pred HHHHHHHh--CCCCCHHHH
Q 036794 625 TLEQLSLL--GQRISVPLV 641 (1152)
Q Consensus 625 ~LEkLsLl--g~~IT~EdV 641 (1152)
.|++++.. +..|+.+++
T Consensus 429 vl~~a~~~~~~~~i~~~~~ 447 (520)
T PRK10820 429 AIYRALTQLEGYELRPQDI 447 (520)
T ss_pred HHHHHHHhCCCCcccHHHc
Confidence 99998765 446888885
No 146
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.49 E-value=4.4e-13 Score=144.87 Aligned_cols=188 Identities=22% Similarity=0.259 Sum_probs=124.6
Q ss_pred CcCccc-C--cHHHHHHHHHHHHhCC-CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccc
Q 036794 419 TFRDLV-G--QNLVAQALSNAVMRRK-VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRN 494 (1152)
Q Consensus 419 sFddLV-G--Qe~v~q~Lk~aL~~gr-i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~d 494 (1152)
+|+.+| | ++.+...+........ ....++||||+|+|||++.+++++++....... -
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~-------------------~ 66 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGK-------------------R 66 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS--------------------
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccc-------------------c
Confidence 699986 6 4555555555444422 234678999999999999999999876432111 1
Q ss_pred eEEeCCCCCCC--------HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHH--HHHHHHHHhhC-CCCEEEEEEcCC
Q 036794 495 IKEVGPVGNFD--------FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDS--WSAISKVVDRA-PRRVVFILVSSS 563 (1152)
Q Consensus 495 viEIdaas~~~--------vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~ea--qnaLLklLEep-p~~VifILaTN~ 563 (1152)
+..+++. .+. -+.+.++.+.+ ....+|+||+++.+.... +..|..+++.. .....+|++++.
T Consensus 67 v~y~~~~-~f~~~~~~~~~~~~~~~~~~~~------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~ 139 (219)
T PF00308_consen 67 VVYLSAE-EFIREFADALRDGEIEEFKDRL------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDR 139 (219)
T ss_dssp EEEEEHH-HHHHHHHHHHHTTSHHHHHHHH------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred ceeecHH-HHHHHHHHHHHcccchhhhhhh------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 2222210 000 01111222222 345899999999997653 67888777762 123356666643
Q ss_pred -C---CcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 036794 564 -L---DALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL 632 (1152)
Q Consensus 564 -~---dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl 632 (1152)
| ..+.+.|.+|+. .+.+.+|+.+++..+|+..+...|+.++++++++|+..+++|+|.+...|+++..+
T Consensus 140 ~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 140 PPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDAY 215 (219)
T ss_dssp -TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred CCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 3 346778999976 69999999999999999999999999999999999999999999999999998765
No 147
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3e-13 Score=159.12 Aligned_cols=175 Identities=18% Similarity=0.219 Sum_probs=129.9
Q ss_pred CCcCcccCcHHHHHHHHHHHHhC------------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMRR------------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~g------------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|+||-+++++..+|..+|... ..+.++|||||||+|||.+|+++|++.+..+....
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVK---------- 577 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVK---------- 577 (802)
T ss_pred CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeec----------
Confidence 47999999999999999888652 33558999999999999999999999775532111
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhh--CC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKVVDR--AP 552 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLklLEe--pp 552 (1152)
| +.++ +.+-.-.-..+|.+|..++.. ...|||+||+|.|.+ ...|.||.-|+. ..
T Consensus 578 ----G--PELl--NkYVGESErAVR~vFqRAR~s----aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R 645 (802)
T KOG0733|consen 578 ----G--PELL--NKYVGESERAVRQVFQRARAS----APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEER 645 (802)
T ss_pred ----C--HHHH--HHHhhhHHHHHHHHHHHhhcC----CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccc
Confidence 0 0011 001111234588888887543 458999999999943 356788887776 34
Q ss_pred CCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHh
Q 036794 553 RRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASR 614 (1152)
Q Consensus 553 ~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~ 614 (1152)
..|++|.+||.|+.+++++++-+. .+.+..|+..+..++|+.+.+..+..+++++ ++.|+..
T Consensus 646 ~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~ 711 (802)
T KOG0733|consen 646 RGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN 711 (802)
T ss_pred cceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc
Confidence 689999999999999999998654 4667788899999999999886666666654 6667665
No 148
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.49 E-value=2.7e-13 Score=168.83 Aligned_cols=196 Identities=19% Similarity=0.294 Sum_probs=134.0
Q ss_pred CcccCcHHHHHHHHHHHHhC--------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCC-
Q 036794 421 RDLVGQNLVAQALSNAVMRR--------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK- 491 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~g--------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~- 491 (1152)
..|+||++++..|..++... +....+||+||+|||||++|++||+.+++..... .|..+....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~i--------d~se~~~~~~ 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRF--------DMSEYMERHT 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEe--------echhhccccc
Confidence 56899999999999998752 2224699999999999999999999996543211 111111100
Q ss_pred ccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEE
Q 036794 492 SRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILV 560 (1152)
Q Consensus 492 ~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILa 560 (1152)
...++. .+.++.+.+....+.+.+...| +.||||||+|+++++.++.|+++|++. -.+++||++
T Consensus 530 ~~~LiG-~~~gyvg~~~~g~L~~~v~~~p----~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~T 604 (758)
T PRK11034 530 VSRLIG-APPGYVGFDQGGLLTDAVIKHP----HAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_pred HHHHcC-CCCCcccccccchHHHHHHhCC----CcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEe
Confidence 000110 1223333333333444444333 489999999999999999999999862 147889999
Q ss_pred cCCC-------------------------CcchHHHHccce-EEEecCCChhHHHHHHHHHHH-------HcCC--CCCH
Q 036794 561 SSSL-------------------------DALPHIIISRCQ-KFFFPKMKDADIIYTLQWIAS-------KEGI--EIDK 605 (1152)
Q Consensus 561 TN~~-------------------------dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iak-------keGl--~Id~ 605 (1152)
||.- ..+.|.++.|+. ++.|++++.+++..++...+. ..|+ .+++
T Consensus 605 sN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~ 684 (758)
T PRK11034 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQ 684 (758)
T ss_pred CCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECH
Confidence 9821 125678999997 799999999999887765543 2344 5799
Q ss_pred HHHHHHHHhc---CCCHHHHHHHHHHH
Q 036794 606 DALKLIASRS---DGSLRDAEMTLEQL 629 (1152)
Q Consensus 606 dALelLAe~s---~GDLR~Ain~LEkL 629 (1152)
+++++|+... .-..|.+...|++.
T Consensus 685 ~~~~~l~~~~~~~~~GAR~l~r~i~~~ 711 (758)
T PRK11034 685 EARDWLAEKGYDRAMGARPMARVIQDN 711 (758)
T ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHH
Confidence 9999999872 22466666666653
No 149
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.49 E-value=4.2e-13 Score=169.93 Aligned_cols=220 Identities=21% Similarity=0.307 Sum_probs=145.6
Q ss_pred ccccccccccccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCC--------CCcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 396 GQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRK--------VGLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 396 ~~~~l~~~~~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gr--------i~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++..........+.+.. +..|+||+.++..|..++...+ ....|||+||+|||||++|++||+.+
T Consensus 547 p~~~~~~~~~~~l~~l~~~l----~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 547 PVSRMLESEREKLLRMEQEL----HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CchhhhhhHHHHHHHHHHHh----CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44444444433344444443 6889999999999999987632 11369999999999999999999988
Q ss_pred cccCCCCCCCCCCCCccccccCCCc-cceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHH
Q 036794 468 NCQSLEQPKPCGFCNSCISHDRGKS-RNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISK 546 (1152)
Q Consensus 468 ~~~~~e~~epcg~c~~c~~i~~g~~-~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLk 546 (1152)
.+... ++ .+..|..+..... ..++. .+.++.+.+....+.+.+...| +.||||||++.+++..++.|++
T Consensus 623 ~~~~~----~~-i~id~se~~~~~~~~~LiG-~~pgy~g~~~~g~l~~~v~~~p----~~vLllDEieka~~~v~~~Ll~ 692 (857)
T PRK10865 623 FDSDD----AM-VRIDMSEFMEKHSVSRLVG-APPGYVGYEEGGYLTEAVRRRP----YSVILLDEVEKAHPDVFNILLQ 692 (857)
T ss_pred hcCCC----cE-EEEEhHHhhhhhhHHHHhC-CCCcccccchhHHHHHHHHhCC----CCeEEEeehhhCCHHHHHHHHH
Confidence 65421 11 1222222211100 00110 1223344444333444444433 4799999999999999999999
Q ss_pred HHhhC-----------CCCEEEEEEcCCC-------------------------CcchHHHHccc-eEEEecCCChhHHH
Q 036794 547 VVDRA-----------PRRVVFILVSSSL-------------------------DALPHIIISRC-QKFFFPKMKDADII 589 (1152)
Q Consensus 547 lLEep-----------p~~VifILaTN~~-------------------------dkL~~aL~SR~-qvI~F~~p~~~EI~ 589 (1152)
+|++. -.+++||++||.. ..+.|.|++|+ .++.|.|++.+++.
T Consensus 693 ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~ 772 (857)
T PRK10865 693 VLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIA 772 (857)
T ss_pred HHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHH
Confidence 99873 2456789988752 12456799999 68999999999998
Q ss_pred HHHHHHHHH-------cC--CCCCHHHHHHHHHhc-C--CCHHHHHHHHHHH
Q 036794 590 YTLQWIASK-------EG--IEIDKDALKLIASRS-D--GSLRDAEMTLEQL 629 (1152)
Q Consensus 590 eiL~~iakk-------eG--l~Id~dALelLAe~s-~--GDLR~Ain~LEkL 629 (1152)
.++...+.. .+ +.++++++++|+.+. . -..|.+.+.|++.
T Consensus 773 ~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 773 SIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred HHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHH
Confidence 877665543 24 458999999999973 2 2577777777764
No 150
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.48 E-value=4.5e-13 Score=167.49 Aligned_cols=196 Identities=20% Similarity=0.284 Sum_probs=139.8
Q ss_pred CcccCcHHHHHHHHHHHHhC--------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc
Q 036794 421 RDLVGQNLVAQALSNAVMRR--------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS 492 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~g--------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~ 492 (1152)
..|+||+.+++.|.+++... +...+|||+||+|||||++|++||+.+++.......+ .+... +
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~s--------e~~~~-~ 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMS--------EYMEK-H 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCc--------hhhhc-c
Confidence 56899999999999998753 2234699999999999999999999987543221110 11000 0
Q ss_pred cceEEe-CCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEE
Q 036794 493 RNIKEV-GPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILV 560 (1152)
Q Consensus 493 ~dviEI-daas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILa 560 (1152)
.....+ .+.++.+.++...+.+.+...| +.||||||+++++++.++.|+++|++. -.+++||++
T Consensus 525 ~~~~lig~~~gyvg~~~~~~l~~~~~~~p----~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~T 600 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQGGLLTEAVRKHP----HCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMT 600 (731)
T ss_pred cHHHHhcCCCCCcccchhhHHHHHHHhCC----CeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEEC
Confidence 000011 1334556666666666665544 489999999999999999999999972 246789998
Q ss_pred cCCCC-------------------------cchHHHHccce-EEEecCCChhHHHHHHHHHHHH-------cC--CCCCH
Q 036794 561 SSSLD-------------------------ALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASK-------EG--IEIDK 605 (1152)
Q Consensus 561 TN~~d-------------------------kL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakk-------eG--l~Id~ 605 (1152)
||-.. .+.|.++.|+. +|.|.+++.+++..++...+.+ .| +.+++
T Consensus 601 sn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~ 680 (731)
T TIGR02639 601 SNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTD 680 (731)
T ss_pred CCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCH
Confidence 86421 25677889996 7999999999999988776652 23 56899
Q ss_pred HHHHHHHHhc---CCCHHHHHHHHHHH
Q 036794 606 DALKLIASRS---DGSLRDAEMTLEQL 629 (1152)
Q Consensus 606 dALelLAe~s---~GDLR~Ain~LEkL 629 (1152)
+++++|+... .-..|.+...|++.
T Consensus 681 ~a~~~La~~~~~~~~GaR~l~r~i~~~ 707 (731)
T TIGR02639 681 DAKKYLAEKGYDEEFGARPLARVIQEE 707 (731)
T ss_pred HHHHHHHHhCCCcccCchHHHHHHHHH
Confidence 9999999872 23577777777664
No 151
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.47 E-value=6.1e-13 Score=151.36 Aligned_cols=105 Identities=21% Similarity=0.300 Sum_probs=82.2
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCC------------CCcchHHHHccceEEEecCCChhHHHHHH
Q 036794 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSS------------LDALPHIIISRCQKFFFPKMKDADIIYTL 592 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~------------~dkL~~aL~SR~qvI~F~~p~~~EI~eiL 592 (1152)
++|+||||+|+|.-+++..|-+.||.+ -..++|++||. ++-+|..|+.||.+|...|++.+++.++|
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~-~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il 357 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESE-LSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQIL 357 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTST-T--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHH
T ss_pred cceEEecchhhccHHHHHHHHHHhcCC-CCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHH
Confidence 579999999999999999999999984 45577788873 44688999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHh-cCCCHHHHHHHHHHHH
Q 036794 593 QWIASKEGIEIDKDALKLIASR-SDGSLRDAEMTLEQLS 630 (1152)
Q Consensus 593 ~~iakkeGl~Id~dALelLAe~-s~GDLR~Ain~LEkLs 630 (1152)
.-+|+.+++.++++|+++|... ...++|.++++|.-+.
T Consensus 358 ~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 358 KIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred HhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 9999999999999999999988 5679999999987654
No 152
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.8e-13 Score=161.64 Aligned_cols=205 Identities=21% Similarity=0.233 Sum_probs=151.1
Q ss_pred CCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.+|.|+.|.+++++.|.+.+.. +++|.++||+||||||||++|+++|.+.+.++..
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~------------- 213 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS------------- 213 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCcee-------------
Confidence 5799999999999998887743 5788899999999999999999999887755321
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhhCC
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKVVDRAP 552 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLklLEepp 552 (1152)
-+..+++++.. ..+...+|++++++.... +.+|||||+|.... ...|.||--++...
T Consensus 214 ---iSGS~FVemfV--GvGAsRVRdLF~qAkk~a----P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~ 284 (596)
T COG0465 214 ---ISGSDFVEMFV--GVGASRVRDLFEQAKKNA----PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 284 (596)
T ss_pred ---ccchhhhhhhc--CCCcHHHHHHHHHhhccC----CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC
Confidence 22334555432 356788999999986432 37999999998742 24556666666544
Q ss_pred --CCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHH
Q 036794 553 --RRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASRSDG-SLRDAEMT 625 (1152)
Q Consensus 553 --~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~s~G-DLR~Ain~ 625 (1152)
..+++|.+||.++.++++|++-.. .|....|+.....++++-+++...+ ++++ +..+++.++| ...++.|.
T Consensus 285 ~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l--~~~Vdl~~iAr~tpGfsGAdL~nl 362 (596)
T COG0465 285 GNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL--AEDVDLKKIARGTPGFSGADLANL 362 (596)
T ss_pred CCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC--CCcCCHHHHhhhCCCcccchHhhh
Confidence 578999999999999999987543 5888899989999999866655443 3322 4448888777 55677777
Q ss_pred HHHHHHhC-----CCCCHHHHHHHHh
Q 036794 626 LEQLSLLG-----QRISVPLVQELVG 646 (1152)
Q Consensus 626 LEkLsLlg-----~~IT~EdV~elVg 646 (1152)
+..+++++ ..|+..++.+.++
T Consensus 363 ~NEAal~aar~n~~~i~~~~i~ea~d 388 (596)
T COG0465 363 LNEAALLAARRNKKEITMRDIEEAID 388 (596)
T ss_pred HHHHHHHHHHhcCeeEeccchHHHHH
Confidence 77766552 2477777776664
No 153
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.45 E-value=3.4e-12 Score=146.15 Aligned_cols=231 Identities=18% Similarity=0.224 Sum_probs=148.1
Q ss_pred cCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHH-------cccCCC-CCCCCCCCCccccccCCC
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL-------NCQSLE-QPKPCGFCNSCISHDRGK 491 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL-------~~~~~e-~~epcg~c~~c~~i~~g~ 491 (1152)
|..||||++++..|.-++-....++ +||.|++|+|||+++++|+..+ +|.... ...||..|..|.......
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~-vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 81 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGG-VMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQ 81 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCe-EEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcc
Confidence 8999999999999876666655554 7899999999999999999987 554332 237899999998753210
Q ss_pred c--------cceEEeCCC-----CCCCHHHHHHHHHH----HhhCCC-CCCceEEEEeCCCCCCHHHHHHHHHHHhhC--
Q 036794 492 S--------RNIKEVGPV-----GNFDFESILDLLDN----MVTSRP-PSQYRIFVFDDCDTLSPDSWSAISKVVDRA-- 551 (1152)
Q Consensus 492 ~--------~dviEIdaa-----s~~~vdeIreLle~----a~~~P~-~a~~kVVIIDEID~Ls~eaqnaLLklLEep-- 551 (1152)
. ..+..+ +. .-++.-.+...+.. +..-+. .+.++++||||++.|+...|+.|+.+|++.
T Consensus 82 ~~~~~~~~~~~~~~l-P~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~ 160 (337)
T TIGR02030 82 EPLSIIKKPVPVVDL-PLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWN 160 (337)
T ss_pred cccccccCCCCcCCC-CCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCe
Confidence 0 000111 11 11121122222111 011111 256789999999999999999999999863
Q ss_pred -----------CCCEEEEEEcCCCC-cchHHHHccceE-EEecCCCh-hHHHHHHHHHHH--------------------
Q 036794 552 -----------PRRVVFILVSSSLD-ALPHIIISRCQK-FFFPKMKD-ADIIYTLQWIAS-------------------- 597 (1152)
Q Consensus 552 -----------p~~VifILaTN~~d-kL~~aL~SR~qv-I~F~~p~~-~EI~eiL~~iak-------------------- 597 (1152)
+.++++|.+.|-.+ .++++++.|+.. +.+..+.. ++..+++.....
T Consensus 161 ~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~ 240 (337)
T TIGR02030 161 VVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQ 240 (337)
T ss_pred EEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCH
Confidence 23344444444223 599999999984 66766655 554444443110
Q ss_pred ---------HcCCCCCHHHHHHHHHh---cCC-CHHHHHHHHHHH---HHhCC--CCCHHHHHHHHhccchhh
Q 036794 598 ---------KEGIEIDKDALKLIASR---SDG-SLRDAEMTLEQL---SLLGQ--RISVPLVQELVGLISDEK 652 (1152)
Q Consensus 598 ---------keGl~Id~dALelLAe~---s~G-DLR~Ain~LEkL---sLlg~--~IT~EdV~elVg~v~ee~ 652 (1152)
-..+.++++++++++.. .+. +.|..+..+..+ +++.+ .++.+||+.++..+...-
T Consensus 241 ~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~HR 313 (337)
T TIGR02030 241 AKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALRHR 313 (337)
T ss_pred HHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHh
Confidence 13566889988888776 333 467776666554 44444 599999998886654443
No 154
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.45 E-value=3.7e-12 Score=145.41 Aligned_cols=157 Identities=16% Similarity=0.229 Sum_probs=114.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCC
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR 520 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P 520 (1152)
+.+..++||||||||||.+|+++|+++++..... ..+. +. +....-....+++++..+....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~v-------------sa~e---L~--sk~vGEsEk~IR~~F~~A~~~a 207 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVM-------------SAGE---LE--SENAGEPGKLIRQRYREAADII 207 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEE-------------EHHH---hh--cCcCCcHHHHHHHHHHHHHHHh
Confidence 6677999999999999999999999998752111 0000 00 0111123456888888775422
Q ss_pred -CCCCceEEEEeCCCCCCHH-----------H-HHHHHHHHhh--------------CCCCEEEEEEcCCCCcchHHHHc
Q 036794 521 -PPSQYRIFVFDDCDTLSPD-----------S-WSAISKVVDR--------------APRRVVFILVSSSLDALPHIIIS 573 (1152)
Q Consensus 521 -~~a~~kVVIIDEID~Ls~e-----------a-qnaLLklLEe--------------pp~~VifILaTN~~dkL~~aL~S 573 (1152)
..+...||||||||.+... . ...|+..++. ....|.+|++||+++.|+++|++
T Consensus 208 ~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlR 287 (413)
T PLN00020 208 KKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIR 287 (413)
T ss_pred hccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcC
Confidence 2245689999999987431 1 2466766653 24578999999999999999999
Q ss_pred --cceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Q 036794 574 --RCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGS 618 (1152)
Q Consensus 574 --R~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GD 618 (1152)
|+..+ |..|+.+++.++|+.+++..+ ++...+..|+..++|-
T Consensus 288 pGRfDk~-i~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 288 DGRMEKF-YWAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQ 331 (413)
T ss_pred CCCCCce-eCCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCC
Confidence 77775 458999999999999888765 5678888999998884
No 155
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.7e-12 Score=145.87 Aligned_cols=238 Identities=21% Similarity=0.279 Sum_probs=155.3
Q ss_pred hhhhCCCCcCcccCcHHHHHHHHHHHHh---CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 412 TQKYMPRTFRDLVGQNLVAQALSNAVMR---RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 412 ~eKyRP~sFddLVGQe~v~q~Lk~aL~~---gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
..-|-|.. +.+.+..+.+|...+.. +..+..+++||++|||||.+++.+.+++........ ....+|....
T Consensus 11 ~~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~---~~yINc~~~~ 84 (366)
T COG1474 11 LEDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE---VVYINCLELR 84 (366)
T ss_pred CCCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc---eEEEeeeeCC
Confidence 34566643 78888777766655443 444555899999999999999999999876532221 1122333332
Q ss_pred CCCc------cceEEeCCCCCCCHHH-HHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh---hCCCCEEEE
Q 036794 489 RGKS------RNIKEVGPVGNFDFES-ILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVD---RAPRRVVFI 558 (1152)
Q Consensus 489 ~g~~------~dviEIdaas~~~vde-IreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLE---epp~~VifI 558 (1152)
.... ..+..+ +.......+ ...+.+.+. .....-||+|||+|.|.....+.|+.++. +....+.+|
T Consensus 85 t~~~i~~~i~~~~~~~-p~~g~~~~~~~~~l~~~~~---~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi 160 (366)
T COG1474 85 TPYQVLSKILNKLGKV-PLTGDSSLEILKRLYDNLS---KKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSII 160 (366)
T ss_pred CHHHHHHHHHHHcCCC-CCCCCchHHHHHHHHHHHH---hcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEE
Confidence 1110 000000 111111122 222222222 13556789999999997765455555444 444567888
Q ss_pred EEcCCCC---cchHHHHccce--EEEecCCChhHHHHHHHHHHHH--cCCCCCHHHHHHHHHh---cCCCHHHHHHHHHH
Q 036794 559 LVSSSLD---ALPHIIISRCQ--KFFFPKMKDADIIYTLQWIASK--EGIEIDKDALKLIASR---SDGSLRDAEMTLEQ 628 (1152)
Q Consensus 559 LaTN~~d---kL~~aL~SR~q--vI~F~~p~~~EI~eiL~~iakk--eGl~Id~dALelLAe~---s~GDLR~Ain~LEk 628 (1152)
+++|+.+ .+.+.+.+++. .|.|+|++.+|+.++|..+++. ..-.++++++++++.. ..||.|.++..|..
T Consensus 161 ~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~ 240 (366)
T COG1474 161 AVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRR 240 (366)
T ss_pred EEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 8888764 57777888876 4889999999999999998874 2335899999888755 66899999999999
Q ss_pred HHHhC-----CCCCHHHHHHHHhccchhhHHHHHHH
Q 036794 629 LSLLG-----QRISVPLVQELVGLISDEKLVDLLDL 659 (1152)
Q Consensus 629 LsLlg-----~~IT~EdV~elVg~v~ee~ifdLldA 659 (1152)
++..+ ..++.++|..+........+.+.++.
T Consensus 241 A~eiAe~~~~~~v~~~~v~~a~~~~~~~~~~~~~~~ 276 (366)
T COG1474 241 AGEIAEREGSRKVSEDHVREAQEEIERDVLEEVLKT 276 (366)
T ss_pred HHHHHHhhCCCCcCHHHHHHHHHHhhHHHHHHHHHc
Confidence 87663 46999999999665555555554443
No 156
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.42 E-value=8e-12 Score=142.96 Aligned_cols=234 Identities=15% Similarity=0.162 Sum_probs=139.3
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCC--ccccccCCCcc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCN--SCISHDRGKSR 493 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~--~c~~i~~g~~~ 493 (1152)
.|..|.+|+||+.++..|.-++..... +++||+|+||||||++|++|++.+.+.......||..+. .|.........
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~-~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~ 81 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPGI-GGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSST 81 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccCC-CcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCC
Confidence 367799999999999988865543333 348999999999999999999999765443333333321 01000000000
Q ss_pred c-------eEEeCCC----CCCCHHHHHHHHHH----HhhCCC-CCCceEEEEeCCCCCCHHHHHHHHHHHhhC------
Q 036794 494 N-------IKEVGPV----GNFDFESILDLLDN----MVTSRP-PSQYRIFVFDDCDTLSPDSWSAISKVVDRA------ 551 (1152)
Q Consensus 494 d-------viEIdaa----s~~~vdeIreLle~----a~~~P~-~a~~kVVIIDEID~Ls~eaqnaLLklLEep------ 551 (1152)
. +..+-.. .-+|.-.+...+.. +..-+. .+..+++||||++.++...++.|+..|++.
T Consensus 82 ~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r 161 (334)
T PRK13407 82 TMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVER 161 (334)
T ss_pred cccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEE
Confidence 0 1111000 01111111111111 111111 245689999999999999999999999863
Q ss_pred -------CCCEEEEEEcCCCC-cchHHHHccce-EEEecCCCh-hHHHHHHHHHHH------------------------
Q 036794 552 -------PRRVVFILVSSSLD-ALPHIIISRCQ-KFFFPKMKD-ADIIYTLQWIAS------------------------ 597 (1152)
Q Consensus 552 -------p~~VifILaTN~~d-kL~~aL~SR~q-vI~F~~p~~-~EI~eiL~~iak------------------------ 597 (1152)
+..+++|.++|-.+ .++++++.||. .+.+.++.. ++..+++.....
T Consensus 162 ~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (334)
T PRK13407 162 EGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRIL 241 (334)
T ss_pred CCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHH
Confidence 23455555555333 58999999987 466666655 554444443211
Q ss_pred -----HcCCCCCHHHHHHHHHh---cC-CCHHHHHHHHHHH---HHhCC--CCCHHHHHHHHhccch
Q 036794 598 -----KEGIEIDKDALKLIASR---SD-GSLRDAEMTLEQL---SLLGQ--RISVPLVQELVGLISD 650 (1152)
Q Consensus 598 -----keGl~Id~dALelLAe~---s~-GDLR~Ain~LEkL---sLlg~--~IT~EdV~elVg~v~e 650 (1152)
-..+.++++.++++++. ++ ...|..+.++..+ +++.+ .|+.+||+++...+..
T Consensus 242 ~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~vl~ 308 (334)
T PRK13407 242 GARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVATMALS 308 (334)
T ss_pred HHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHHhhh
Confidence 13467899998888777 22 2566666655544 34443 4999999887754433
No 157
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.42 E-value=1.9e-12 Score=145.12 Aligned_cols=208 Identities=15% Similarity=0.189 Sum_probs=141.1
Q ss_pred CcCcccCcHHHHHHHHH-HHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCC-ccceE
Q 036794 419 TFRDLVGQNLVAQALSN-AVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK-SRNIK 496 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~-aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~-~~dvi 496 (1152)
.|+.|++.+..++.+.. +.+-+.....+||.|++||||..+|++.+........ |+ ..-+|..+.... ..+++
T Consensus 202 ~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~----pF-lalNCA~lPe~~aEsElF 276 (511)
T COG3283 202 GFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSK----PF-LALNCASLPEDAAESELF 276 (511)
T ss_pred chHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcccCC----Ce-eEeecCCCchhHhHHHHh
Confidence 59999999887777664 4444666667999999999999999999876433221 11 122333331110 11111
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-----------CCCCEEEEEEcCCC-
Q 036794 497 EVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-----------APRRVVFILVSSSL- 564 (1152)
Q Consensus 497 EIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-----------pp~~VifILaTN~~- 564 (1152)
--.+ + .+.-..+++. +.++.||+|||..|++..|.+||++|.+ ...+|++|++|..+
T Consensus 277 G~ap-g---~~gk~GffE~-------AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL 345 (511)
T COG3283 277 GHAP-G---DEGKKGFFEQ-------ANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNL 345 (511)
T ss_pred cCCC-C---CCCccchhhh-------ccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccH
Confidence 1111 0 0011123333 5668999999999999999999999987 23588899988532
Q ss_pred ------CcchHHHHccceEEEecCCChhHH----H----HHHHHHHHHcCC---CCCHHHHHHHHHh-cCCCHHHHHHHH
Q 036794 565 ------DALPHIIISRCQKFFFPKMKDADI----I----YTLQWIASKEGI---EIDKDALKLIASR-SDGSLRDAEMTL 626 (1152)
Q Consensus 565 ------dkL~~aL~SR~qvI~F~~p~~~EI----~----eiL~~iakkeGl---~Id~dALelLAe~-s~GDLR~Ain~L 626 (1152)
.++.+.|..|+.++.+.-|+..+. . -++++++.+.|+ .++++.+.+|..| |+||+|++.|.|
T Consensus 346 ~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~i 425 (511)
T COG3283 346 VELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAI 425 (511)
T ss_pred HHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHH
Confidence 357778999999866665554432 2 256777777776 4789999999999 999999999999
Q ss_pred HHHHHh--CCCCCHHHHH
Q 036794 627 EQLSLL--GQRISVPLVQ 642 (1152)
Q Consensus 627 EkLsLl--g~~IT~EdV~ 642 (1152)
-+++.. +..++.+++.
T Consensus 426 yRA~s~~Eg~~l~i~~i~ 443 (511)
T COG3283 426 YRALTLLEGYELRIEDIL 443 (511)
T ss_pred HHHHHHhccCccchhhcc
Confidence 887544 4556666654
No 158
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=7e-12 Score=142.00 Aligned_cols=185 Identities=19% Similarity=0.189 Sum_probs=124.5
Q ss_pred CcCcccCcHHHHHHHHHHHHh----------C-CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 419 TFRDLVGQNLVAQALSNAVMR----------R-KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~----------g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
.|+||.|.+++++-|++++.- . +.-.++|++||||||||.+|+++|.+.+-.
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tT----------------- 272 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTT----------------- 272 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCe-----------------
Confidence 579999999999999998754 1 223589999999999999999999885532
Q ss_pred cCCCccceEEeCCC----CCC-CHHH-HHHHHHHHhhCCCCCCceEEEEeCCCCCCH------------HHHHHHHHHHh
Q 036794 488 DRGKSRNIKEVGPV----GNF-DFES-ILDLLDNMVTSRPPSQYRIFVFDDCDTLSP------------DSWSAISKVVD 549 (1152)
Q Consensus 488 ~~g~~~dviEIdaa----s~~-~vde-IreLle~a~~~P~~a~~kVVIIDEID~Ls~------------eaqnaLLklLE 549 (1152)
+|.+... ... .-+. ++-||+-+++.. ..+|||||||.|.. ..-+.||-.|+
T Consensus 273 -------FFNVSsstltSKwRGeSEKlvRlLFemARfyA----PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmD 341 (491)
T KOG0738|consen 273 -------FFNVSSSTLTSKWRGESEKLVRLLFEMARFYA----PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMD 341 (491)
T ss_pred -------EEEechhhhhhhhccchHHHHHHHHHHHHHhC----CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhh
Confidence 2222211 111 1233 455555554332 36999999999832 24557887777
Q ss_pred hC-----CCCEEEEEE-cCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHH
Q 036794 550 RA-----PRRVVFILV-SSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRD 621 (1152)
Q Consensus 550 ep-----p~~VifILa-TN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~ 621 (1152)
.. ...++||++ ||-|-.|+++|++|+. +|.++.|+.+.....|+..+..-. ..++--++.|++.++| +-.+
T Consensus 342 G~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~-~~~~~~~~~lae~~eGySGaD 420 (491)
T KOG0738|consen 342 GVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVE-LDDPVNLEDLAERSEGYSGAD 420 (491)
T ss_pred ccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcccc-CCCCccHHHHHHHhcCCChHH
Confidence 52 234555555 5667789999999999 488888888888888776554322 2234457788888766 4445
Q ss_pred HHHHHHHHHHh
Q 036794 622 AEMTLEQLSLL 632 (1152)
Q Consensus 622 Ain~LEkLsLl 632 (1152)
+.|.+..+++.
T Consensus 421 I~nvCreAsm~ 431 (491)
T KOG0738|consen 421 ITNVCREASMM 431 (491)
T ss_pred HHHHHHHHHHH
Confidence 55566555544
No 159
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.41 E-value=2.9e-12 Score=165.90 Aligned_cols=202 Identities=12% Similarity=0.091 Sum_probs=135.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCC-------CCCCCCccccccCCCccc--------------eEEeC
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPK-------PCGFCNSCISHDRGKSRN--------------IKEVG 499 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~e-------pcg~c~~c~~i~~g~~~d--------------viEId 499 (1152)
..+.++||+||||||||.+|+++|.+.+.+...... |-++... .+..+...+ +.++.
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d--~i~iges~~~~~~~~~~~~~~~e~~e~~ 1705 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLID--DIDIDDSDDIDDSDDIDRDLDTELLTMM 1705 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccc--ccccccccccccccccccccchhhhhhc
Confidence 456699999999999999999999998766433210 0000000 000010000 00100
Q ss_pred --CC--CCCCHH--HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH-----HHHHHHHHHhh-----CCCCEEEEEEcCC
Q 036794 500 --PV--GNFDFE--SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD-----SWSAISKVVDR-----APRRVVFILVSSS 563 (1152)
Q Consensus 500 --aa--s~~~vd--eIreLle~a~~~P~~a~~kVVIIDEID~Ls~e-----aqnaLLklLEe-----pp~~VifILaTN~ 563 (1152)
.. ...+.+ .++.+++.+... .+.||+|||||.+... ..+.|+..|+. ...+|+||+|||.
T Consensus 1706 n~~~~~m~~~e~~~rIr~lFelARk~----SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNR 1781 (2281)
T CHL00206 1706 NALTMDMMPKIDRFYITLQFELAKAM----SPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHI 1781 (2281)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHC----CCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCC
Confidence 00 001122 377788887654 3489999999999753 25677777764 2457999999999
Q ss_pred CCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH--HHHHHHHhcCC-CHHHHHHHHHHHHHh---C-
Q 036794 564 LDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD--ALKLIASRSDG-SLRDAEMTLEQLSLL---G- 633 (1152)
Q Consensus 564 ~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d--ALelLAe~s~G-DLR~Ain~LEkLsLl---g- 633 (1152)
|+.++|+|++ |+. .|.++.|+..+..+++.......|+.++++ .++.+|..+.| +.+++.+++..+++. .
T Consensus 1782 PD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1782 PQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQK 1861 (2281)
T ss_pred cccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999998 666 488888888887777765555567766644 37888999877 778888888887655 2
Q ss_pred -CCCCHHHHHHHHhcc
Q 036794 634 -QRISVPLVQELVGLI 648 (1152)
Q Consensus 634 -~~IT~EdV~elVg~v 648 (1152)
..|+.+++..++..+
T Consensus 1862 ks~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1862 KSIIDTNTIRSALHRQ 1877 (2281)
T ss_pred CCccCHHHHHHHHHHH
Confidence 348989988887654
No 160
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=4.8e-12 Score=151.59 Aligned_cols=208 Identities=16% Similarity=0.191 Sum_probs=147.1
Q ss_pred CCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|.++.|.+.+++.++.++.. -+.+.++|||||||||||++|+++|.+++..+....
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~---------- 308 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVK---------- 308 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEee----------
Confidence 3689999988888888877643 134458999999999999999999997765532111
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHh--hCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PDSWSAISKVVD--RAP 552 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~eaqnaLLklLE--epp 552 (1152)
.+. +. +..-.-....+++++..+.. ....||||||+|.+. ....+.|+..++ +..
T Consensus 309 ---~~~---l~--sk~vGesek~ir~~F~~A~~----~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~ 376 (494)
T COG0464 309 ---GSE---LL--SKWVGESEKNIRELFEKARK----LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKA 376 (494)
T ss_pred ---CHH---Hh--ccccchHHHHHHHHHHHHHc----CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCcc
Confidence 110 00 00011223567888887763 344799999999982 146678888886 456
Q ss_pred CCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCC-CCHHHHHHHHHhcCC-CHHHHHHHHH
Q 036794 553 RRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIE-IDKDALKLIASRSDG-SLRDAEMTLE 627 (1152)
Q Consensus 553 ~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~-Id~dALelLAe~s~G-DLR~Ain~LE 627 (1152)
.+|++|.+||.++.+++++++ |+. .+.|++|+..+..++++..+...... .++-.++.+++.+.| ...++..++.
T Consensus 377 ~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ 456 (494)
T COG0464 377 EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVR 456 (494)
T ss_pred CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHH
Confidence 788999999999999999999 888 58899999999999999988866654 334457777776665 5556666666
Q ss_pred HHHHh------CCCCCHHHHHHHHhc
Q 036794 628 QLSLL------GQRISVPLVQELVGL 647 (1152)
Q Consensus 628 kLsLl------g~~IT~EdV~elVg~ 647 (1152)
.+++. ...||.+++.+++..
T Consensus 457 ea~~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 457 EAALEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHh
Confidence 65443 124676666666544
No 161
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.40 E-value=1.1e-11 Score=135.96 Aligned_cols=122 Identities=24% Similarity=0.350 Sum_probs=104.4
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCC-------------CCcchHHHHccceEEEecCCChhHHHHH
Q 036794 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSS-------------LDALPHIIISRCQKFFFPKMKDADIIYT 591 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~-------------~dkL~~aL~SR~qvI~F~~p~~~EI~ei 591 (1152)
++|+||||+|+|.-+.|..|.+.||.+ -..++||++|. |+-+|+.|+.|+.+|...+++++++..+
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~-iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~I 375 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESP-IAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQI 375 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCC-CCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHH
Confidence 569999999999999999999999985 45567788763 5568999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHh-cCCCHHHHHHHHHHHHHh----CC-CCCHHHHHHHHhc
Q 036794 592 LQWIASKEGIEIDKDALKLIASR-SDGSLRDAEMTLEQLSLL----GQ-RISVPLVQELVGL 647 (1152)
Q Consensus 592 L~~iakkeGl~Id~dALelLAe~-s~GDLR~Ain~LEkLsLl----g~-~IT~EdV~elVg~ 647 (1152)
|+.+++.+|+.++++|+.+|+.. +..++|.++++|--+.+. +. .|..++|+++...
T Consensus 376 i~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~L 437 (456)
T KOG1942|consen 376 IKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTEL 437 (456)
T ss_pred HHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHH
Confidence 99999999999999999999998 567999999998854333 33 5888888877543
No 162
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.40 E-value=4.7e-12 Score=157.47 Aligned_cols=209 Identities=15% Similarity=0.211 Sum_probs=135.4
Q ss_pred CCcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cce
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNI 495 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dv 495 (1152)
..|++++|++..++.+.+.+.. ......+||+||+|||||++|++|+........ |+ ...+|..+..... ..+
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~----~~-v~i~c~~~~~~~~~~~l 447 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNR----RM-VKMNCAAMPAGLLESDL 447 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCC----Ce-EEEecccCChhHhhhhh
Confidence 4689999999999888877664 345557999999999999999999987543211 11 1223333321100 001
Q ss_pred EEeCCCCCCC-HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCC
Q 036794 496 KEVGPVGNFD-FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSS 563 (1152)
Q Consensus 496 iEIdaas~~~-vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~ 563 (1152)
+.-......+ .......++. +.+++|||||++.|+...|..|+++|++. +.++.+|++|+.
T Consensus 448 fg~~~~~~~g~~~~~~g~le~-------a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 448 FGHERGAFTGASAQRIGRFEL-------ADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred cCcccccccccccchhhHHHh-------cCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 1000000000 0001112221 45689999999999999999999999862 257889999874
Q ss_pred C-------CcchHHHHccceE--EEecCCCh--hHHHHHHHH----HHHHcCC---CCCHHHHHHHHHh-cCCCHHHHHH
Q 036794 564 L-------DALPHIIISRCQK--FFFPKMKD--ADIIYTLQW----IASKEGI---EIDKDALKLIASR-SDGSLRDAEM 624 (1152)
Q Consensus 564 ~-------dkL~~aL~SR~qv--I~F~~p~~--~EI~eiL~~----iakkeGl---~Id~dALelLAe~-s~GDLR~Ain 624 (1152)
. ..+...|..|+.. |.++|+.. +|+..++.. ++.+.|. .+++++++.|..+ |+||+|++.|
T Consensus 521 ~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~ 600 (686)
T PRK15429 521 DLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELEN 600 (686)
T ss_pred CHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHH
Confidence 3 2356668888775 55555543 344444443 3443343 4899999999999 9999999999
Q ss_pred HHHHHHHhC--CCCCH
Q 036794 625 TLEQLSLLG--QRISV 638 (1152)
Q Consensus 625 ~LEkLsLlg--~~IT~ 638 (1152)
.+++++... ..|+.
T Consensus 601 ~i~~a~~~~~~~~i~~ 616 (686)
T PRK15429 601 VIERAVLLTRGNVLQL 616 (686)
T ss_pred HHHHHHHhCCCCcccc
Confidence 999998763 24554
No 163
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.39 E-value=7.4e-12 Score=143.75 Aligned_cols=231 Identities=17% Similarity=0.187 Sum_probs=145.6
Q ss_pred CcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCC--------CCCccccccCC
Q 036794 419 TFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCG--------FCNSCISHDRG 490 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg--------~c~~c~~i~~g 490 (1152)
.|.+||||++++.+|..++....++ .+||+||+|||||++|+++++.+.+.......||+ .|..|.....+
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~-~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~ 93 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIG-GVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQN 93 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCC-eEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcc
Confidence 5999999999999999998887776 68999999999999999999998765443334444 23334333211
Q ss_pred Cc--------cceEEeCCCCCCCHHH------HHHHHHHHhh--CC---CCCCceEEEEeCCCCCCHHHHHHHHHHHhhC
Q 036794 491 KS--------RNIKEVGPVGNFDFES------ILDLLDNMVT--SR---PPSQYRIFVFDDCDTLSPDSWSAISKVVDRA 551 (1152)
Q Consensus 491 ~~--------~dviEIdaas~~~vde------IreLle~a~~--~P---~~a~~kVVIIDEID~Ls~eaqnaLLklLEep 551 (1152)
.. ..+..+- .+...+. +...+..... .+ ..+..++|||||++.+++..|+.|+.+|++.
T Consensus 94 ~~~~~~~~~~~~~~~lp--~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~ 171 (350)
T CHL00081 94 GETIETEKIKIPMVDLP--LGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASG 171 (350)
T ss_pred cccccceeccccceecC--CCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhC
Confidence 10 1111111 1111111 1111211110 01 1356789999999999999999999999862
Q ss_pred -------------CCCEEEEEEcCCCC-cchHHHHccce-EEEecCCCh-hHHHHHHHHHH-------------------
Q 036794 552 -------------PRRVVFILVSSSLD-ALPHIIISRCQ-KFFFPKMKD-ADIIYTLQWIA------------------- 596 (1152)
Q Consensus 552 -------------p~~VifILaTN~~d-kL~~aL~SR~q-vI~F~~p~~-~EI~eiL~~ia------------------- 596 (1152)
+.++++|.+.|-.+ .+++.++.|+. .+.+..+.. ++..++|+...
T Consensus 172 ~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~ 251 (350)
T CHL00081 172 WNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEE 251 (350)
T ss_pred CeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhcccccc
Confidence 23333444333222 59999999998 467776653 44444443321
Q ss_pred ----------HHcCCCCCHHHHHHHHHh---cC-CCHHHHHHHHHHH---HHhCC--CCCHHHHHHHHhccchhh
Q 036794 597 ----------SKEGIEIDKDALKLIASR---SD-GSLRDAEMTLEQL---SLLGQ--RISVPLVQELVGLISDEK 652 (1152)
Q Consensus 597 ----------kkeGl~Id~dALelLAe~---s~-GDLR~Ain~LEkL---sLlg~--~IT~EdV~elVg~v~ee~ 652 (1152)
.-..+.++++.++++++. ++ -+.|..+.++..+ +++.+ .++.+||+.++..+...-
T Consensus 252 ~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL~HR 326 (350)
T CHL00081 252 LRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCLRHR 326 (350)
T ss_pred CHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHh
Confidence 013577899999888777 22 2577776666553 44444 499999998886654433
No 164
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.2e-12 Score=143.66 Aligned_cols=191 Identities=23% Similarity=0.256 Sum_probs=131.8
Q ss_pred CCcCcccCcHHHHHHHHHHHHh-------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR-------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~-------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
.+|+||-|-+.++++|++.+.- -+.+.++|||||||||||.+|+++|++.++.+....
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~--------- 159 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS--------- 159 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceee---------
Confidence 4799999999999999987743 133458999999999999999999999887643211
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-------HHH----HHHHHHHh----
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-------DSW----SAISKVVD---- 549 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-------eaq----naLLklLE---- 549 (1152)
.+...+ --+.+-..++..+...+..=.+.+|||||+|.+.. ++- +.|.-.=+
T Consensus 160 ----~s~lt~---------KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s 226 (386)
T KOG0737|consen 160 ----VSNLTS---------KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSS 226 (386)
T ss_pred ----ccccch---------hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccC
Confidence 111111 11233344455544444444568999999998742 111 12222212
Q ss_pred hCCCCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHH
Q 036794 550 RAPRRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAEMTLE 627 (1152)
Q Consensus 550 epp~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ain~LE 627 (1152)
.....|+++.|||.|..+++++++|+. +|.+.-|+..+..++|+-+++.+.++ ++-.+..++..+.| +-.++.+++.
T Consensus 227 ~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~ 305 (386)
T KOG0737|consen 227 KDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCR 305 (386)
T ss_pred CCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHH
Confidence 134468888899999999999999966 69999999999999999999988765 22237778888777 4455555554
Q ss_pred HHHH
Q 036794 628 QLSL 631 (1152)
Q Consensus 628 kLsL 631 (1152)
.+++
T Consensus 306 ~Aa~ 309 (386)
T KOG0737|consen 306 LAAL 309 (386)
T ss_pred HHhH
Confidence 4443
No 165
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.39 E-value=2.1e-11 Score=143.57 Aligned_cols=213 Identities=13% Similarity=0.202 Sum_probs=134.6
Q ss_pred CcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cceE
Q 036794 419 TFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNIK 496 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dvi 496 (1152)
.|.+++|....++.+...+.. ......++|+|++||||+++|++++....... .|+ ....|..+..... ..++
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~----~~~-v~v~c~~~~~~~~~~~lf 211 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKD----KRF-VAINCAAIPENLLESELF 211 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCC----CCe-EEEECCCCChHHHHHHhc
Confidence 567899988888777776654 33445689999999999999999998754322 111 1122222210000 0000
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCCC-
Q 036794 497 EVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSSL- 564 (1152)
Q Consensus 497 EIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~~- 564 (1152)
........+.. .........+.+++|||||++.|+...|..|+++|++. +.++.+|++|+..
T Consensus 212 g~~~~~~~~~~------~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l 285 (445)
T TIGR02915 212 GYEKGAFTGAV------KQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDL 285 (445)
T ss_pred CCCCCCcCCCc------cCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCH
Confidence 00000000000 00000011255789999999999999999999999862 2368899998753
Q ss_pred ------CcchHHHHccceE--EEecCCCh--hHHHHHH----HHHHHHcC---CCCCHHHHHHHHHh-cCCCHHHHHHHH
Q 036794 565 ------DALPHIIISRCQK--FFFPKMKD--ADIIYTL----QWIASKEG---IEIDKDALKLIASR-SDGSLRDAEMTL 626 (1152)
Q Consensus 565 ------dkL~~aL~SR~qv--I~F~~p~~--~EI~eiL----~~iakkeG---l~Id~dALelLAe~-s~GDLR~Ain~L 626 (1152)
..+.+.|..|+.. |.++++.. +++..++ ..++...+ ..+++++++.|..+ |+||+|++.|.+
T Consensus 286 ~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i 365 (445)
T TIGR02915 286 KRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKV 365 (445)
T ss_pred HHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHH
Confidence 2466778888875 55555543 2333333 33333334 45899999999999 999999999999
Q ss_pred HHHHHh--CCCCCHHHHH
Q 036794 627 EQLSLL--GQRISVPLVQ 642 (1152)
Q Consensus 627 EkLsLl--g~~IT~EdV~ 642 (1152)
++++.. +..|+.+++.
T Consensus 366 ~~a~~~~~~~~i~~~~l~ 383 (445)
T TIGR02915 366 KRAVIMAEGNQITAEDLG 383 (445)
T ss_pred HHHHHhCCCCcccHHHcC
Confidence 999876 3458877764
No 166
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=5.3e-12 Score=151.89 Aligned_cols=176 Identities=21% Similarity=0.303 Sum_probs=120.5
Q ss_pred CCcCcccCcHHHHHHHHHHHHh----------C-CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR----------R-KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~----------g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.+|+||-|-+++++.+...|.- | +.-.++|||||||||||.+|+|+|.+..-.+...
T Consensus 669 V~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSV------------ 736 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSV------------ 736 (953)
T ss_pred cchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEee------------
Confidence 4899999999999999988764 1 2234799999999999999999999865432211
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH-------------HHHHHHHHHhh---
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD-------------SWSAISKVVDR--- 550 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e-------------aqnaLLklLEe--- 550 (1152)
..+++..+ +-.-.-+.+|++++.++. +.+.|||+||+|.+.+. ....||.-|+.
T Consensus 737 ----KGPELLNM--YVGqSE~NVR~VFerAR~----A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~ 806 (953)
T KOG0736|consen 737 ----KGPELLNM--YVGQSEENVREVFERARS----AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSD 806 (953)
T ss_pred ----cCHHHHHH--HhcchHHHHHHHHHHhhc----cCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccC
Confidence 11112111 111235679999998764 45699999999999542 34566666665
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHcc--ceE-EEecCCChh-HHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC
Q 036794 551 -APRRVVFILVSSSLDALPHIIISR--CQK-FFFPKMKDA-DIIYTLQWIASKEGIEIDKDA-LKLIASRSDG 617 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~SR--~qv-I~F~~p~~~-EI~eiL~~iakkeGl~Id~dA-LelLAe~s~G 617 (1152)
...+|.+|.|||.||.|+++|++- +.. +.+.+...+ .-..+|+.+-++ +.+++++ +..||..++-
T Consensus 807 ~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk--FkLdedVdL~eiAk~cp~ 877 (953)
T KOG0736|consen 807 SSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK--FKLDEDVDLVEIAKKCPP 877 (953)
T ss_pred CCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH--ccCCCCcCHHHHHhhCCc
Confidence 446899999999999999999984 555 555555443 344555555544 3344443 6667777543
No 167
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=1.8e-12 Score=137.25 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=112.8
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceE----
Q 036794 502 GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQK---- 577 (1152)
Q Consensus 502 s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qv---- 577 (1152)
..+++++++++++.+...|.. .+ +||+++|+|+.+++|+||++|||||.+++||++|+++.++++||+|||+.
T Consensus 35 ~~i~Vd~iReii~~~~~~~~~--~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~ 111 (206)
T PRK08485 35 EEFKIEDAKEVIAEAYIAESE--EK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRK 111 (206)
T ss_pred CCCCHHHHHHHHHHHhhCCCC--cE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheecccc
Confidence 368999999999999887753 34 56889999999999999999999999999999999999999999999996
Q ss_pred ---------EEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036794 578 ---------FFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLS 630 (1152)
Q Consensus 578 ---------I~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLs 630 (1152)
++|.+++..++.++|.. .+++++...+++++.|+....|.+|+++...++..
T Consensus 112 ~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~l 172 (206)
T PRK08485 112 QKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEEL 172 (206)
T ss_pred ccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 77899999999999998 67888888999999999999999999988877753
No 168
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.38 E-value=8.9e-12 Score=153.84 Aligned_cols=209 Identities=17% Similarity=0.200 Sum_probs=142.9
Q ss_pred hCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 415 YMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 415 yRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
....+|.++.|.+.++..|.+.+.. +.++.++||+||||||||++|++++++++..+... .
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~i--------s 217 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI--------S 217 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEE--------e
Confidence 3345789999998888777665532 34566799999999999999999999887542111 0
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHh
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKVVD 549 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLklLE 549 (1152)
+.. +.+. ....+...+++++..+... .+.||||||+|.+.. ...+.||..|+
T Consensus 218 ~~~--------~~~~--~~g~~~~~~~~~f~~a~~~----~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~md 283 (644)
T PRK10733 218 GSD--------FVEM--FVGVGASRVRDMFEQAKKA----APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD 283 (644)
T ss_pred hHH--------hHHh--hhcccHHHHHHHHHHHHhc----CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhh
Confidence 000 0000 0112345677777776432 347999999999832 13456666666
Q ss_pred h--CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHH
Q 036794 550 R--APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAE 623 (1152)
Q Consensus 550 e--pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ai 623 (1152)
. ....++||++||.++.+++++++ |+. .|.|+.|+.+++.++++.++....+.-+ -.+..+++.+.| +..++.
T Consensus 284 g~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~-~d~~~la~~t~G~sgadl~ 362 (644)
T PRK10733 284 GFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD-IDAAIIARGTPGFSGADLA 362 (644)
T ss_pred cccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCc-CCHHHHHhhCCCCCHHHHH
Confidence 4 24578999999999999999986 775 5889999999999999988876543211 225668888777 555555
Q ss_pred HHHHHHHHh---C--CCCCHHHHHHHHh
Q 036794 624 MTLEQLSLL---G--QRISVPLVQELVG 646 (1152)
Q Consensus 624 n~LEkLsLl---g--~~IT~EdV~elVg 646 (1152)
+++..++.. . ..|+.+++.+++.
T Consensus 363 ~l~~eAa~~a~r~~~~~i~~~d~~~a~~ 390 (644)
T PRK10733 363 NLVNEAALFAARGNKRVVSMVEFEKAKD 390 (644)
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 555555443 2 3488888877764
No 169
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.38 E-value=1.7e-11 Score=151.10 Aligned_cols=228 Identities=17% Similarity=0.219 Sum_probs=144.3
Q ss_pred cCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHH-------cccCC-CCCCCCCCCCccccccCCC
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL-------NCQSL-EQPKPCGFCNSCISHDRGK 491 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL-------~~~~~-e~~epcg~c~~c~~i~~g~ 491 (1152)
|.+|+||+.++..|.-++.....+ .|||+||+|||||++|++|++.+ +|.+. ....||+.|..|..+..+.
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g-~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~ 81 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIG-GVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPS 81 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCC-eEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccccc
Confidence 899999999999998887777665 49999999999999999999998 23221 1236899999999876554
Q ss_pred c---cceEEeCCCC----CCCHHHHHHHHHHH--hhCC---CCCCceEEEEeCCCCCCHHHHHHHHHHHhhC--------
Q 036794 492 S---RNIKEVGPVG----NFDFESILDLLDNM--VTSR---PPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-------- 551 (1152)
Q Consensus 492 ~---~dviEIdaas----~~~vdeIreLle~a--~~~P---~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-------- 551 (1152)
. ..++.+.... -++..++...+..- ...+ ..+..+||||||++.|+...++.|+.+|++.
T Consensus 82 ~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g 161 (633)
T TIGR02442 82 EQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREG 161 (633)
T ss_pred ccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECC
Confidence 3 1233322110 01111122222110 0011 1246689999999999999999999999863
Q ss_pred -----CCCEEEEEEcCCC-CcchHHHHccceE-EEecCCC-hhHHHHHHHHHHH--------------------------
Q 036794 552 -----PRRVVFILVSSSL-DALPHIIISRCQK-FFFPKMK-DADIIYTLQWIAS-------------------------- 597 (1152)
Q Consensus 552 -----p~~VifILaTN~~-dkL~~aL~SR~qv-I~F~~p~-~~EI~eiL~~iak-------------------------- 597 (1152)
+.++++|+++|-. ..++++|++|+.. |.+..+. .++..+++.....
T Consensus 162 ~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~a 241 (633)
T TIGR02442 162 LSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARA 241 (633)
T ss_pred ceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHH
Confidence 2456777766632 3588899999973 5555554 2333333322110
Q ss_pred ---HcCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHH---HHhC--CCCCHHHHHHHHhcc
Q 036794 598 ---KEGIEIDKDALKLIASRS---DG-SLRDAEMTLEQL---SLLG--QRISVPLVQELVGLI 648 (1152)
Q Consensus 598 ---keGl~Id~dALelLAe~s---~G-DLR~Ain~LEkL---sLlg--~~IT~EdV~elVg~v 648 (1152)
...+.++++++++|+..+ +- .+|..+.++.-+ +.+. ..|+.+||.+++..+
T Consensus 242 r~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lv 304 (633)
T TIGR02442 242 RSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELV 304 (633)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 124667888888877763 11 356555554443 3333 247888877776543
No 170
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=4.4e-12 Score=137.20 Aligned_cols=175 Identities=21% Similarity=0.265 Sum_probs=123.5
Q ss_pred CcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 419 TFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.++||-|.+..++.|.+++-- -+.|.++|+|||||||||.+|++.|...+..+.....
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAg---------- 238 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAG---------- 238 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcc----------
Confidence 568999999999999888743 2455689999999999999999999987765432211
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhh-----
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PDSWSAISKVVDR----- 550 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~eaqnaLLklLEe----- 550 (1152)
+.++.+. -.-+..-+++.+.-+ ....+.+|||||+|.+. .+.|..+|.+|..
T Consensus 239 ------PQLVQMf--IGdGAkLVRDAFaLA----KEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFs 306 (424)
T KOG0652|consen 239 ------PQLVQMF--IGDGAKLVRDAFALA----KEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS 306 (424)
T ss_pred ------hHHHhhh--hcchHHHHHHHHHHh----hccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCC
Confidence 1111110 011233455554443 23455899999999873 3466777777665
Q ss_pred CCCCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC
Q 036794 551 APRRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASRSDG 617 (1152)
Q Consensus 551 pp~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~s~G 617 (1152)
+...+-+|.+||..+.|+|+|++-+. .|.|+.|..+....+++-+.++.++ ++++ .+.|++.+++
T Consensus 307 s~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv--~~DvNfeELaRsTdd 375 (424)
T KOG0652|consen 307 SDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV--SDDVNFEELARSTDD 375 (424)
T ss_pred CccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCC--CCCCCHHHHhhcccc
Confidence 45689999999999999999887554 5999999999998888877766554 4443 6667777543
No 171
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.37 E-value=3.8e-11 Score=133.04 Aligned_cols=120 Identities=14% Similarity=0.139 Sum_probs=89.2
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhC----------------CCCEEEEEEcCCC-----CcchHHHHccceEEEecC
Q 036794 524 QYRIFVFDDCDTLSPDSWSAISKVVDRA----------------PRRVVFILVSSSL-----DALPHIIISRCQKFFFPK 582 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~eaqnaLLklLEep----------------p~~VifILaTN~~-----dkL~~aL~SR~qvI~F~~ 582 (1152)
.+.+++|||++.++++.++.|+.+|++. ++++++|+++|.. ..+++++++||..+.+..
T Consensus 105 ~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~ 184 (262)
T TIGR02640 105 EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDY 184 (262)
T ss_pred cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCC
Confidence 3469999999999999999999999861 1356788888754 257889999999999999
Q ss_pred CChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhc----------CCCHHHHHHHHHHHHHhCC--CCCHHHHHHHHhcc
Q 036794 583 MKDADIIYTLQWIASKEGIEIDKDALKLIASRS----------DGSLRDAEMTLEQLSLLGQ--RISVPLVQELVGLI 648 (1152)
Q Consensus 583 p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s----------~GDLR~Ain~LEkLsLlg~--~IT~EdV~elVg~v 648 (1152)
|+.++..+++...+ .++++.++.++... .-.+|.++.+...+..++. .++.+++.++...+
T Consensus 185 P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (262)
T TIGR02640 185 PDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQDIPVDVDDEDFVDLCIDI 257 (262)
T ss_pred CCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH
Confidence 99888888887653 35666666665541 1137888888887776643 36777777766443
No 172
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.37 E-value=9.8e-12 Score=145.88 Aligned_cols=188 Identities=23% Similarity=0.305 Sum_probs=119.1
Q ss_pred ccCcHHHHHHHHHHHHh----C-----------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 423 LVGQNLVAQALSNAVMR----R-----------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 423 LVGQe~v~q~Lk~aL~~----g-----------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
|+||+.+++.|..++.. - .....+||+||||||||++|++||+.+++++.... |..+
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id--------~~~l 144 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIAD--------ATTL 144 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecc--------hhhc
Confidence 89999999999777632 1 01246999999999999999999999876532211 1111
Q ss_pred cCCCccceEEeCCCCCC--CHHH-HHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhh
Q 036794 488 DRGKSRNIKEVGPVGNF--DFES-ILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKVVDR 550 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~~--~vde-IreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLklLEe 550 (1152)
. ..+.. +.+. +..++.........+.++||||||+|.++. ..|++||++||.
T Consensus 145 ~-----------~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg 213 (412)
T PRK05342 145 T-----------EAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEG 213 (412)
T ss_pred c-----------cCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhc
Confidence 1 01111 1222 223333221111225678999999999975 378999999985
Q ss_pred CC---------------------CCEEEEEEcCCC------------------------------C--------------
Q 036794 551 AP---------------------RRVVFILVSSSL------------------------------D-------------- 565 (1152)
Q Consensus 551 pp---------------------~~VifILaTN~~------------------------------d-------------- 565 (1152)
.. .++.||+..+.. .
T Consensus 214 ~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~ 293 (412)
T PRK05342 214 TVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKF 293 (412)
T ss_pred CeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHH
Confidence 21 233344322100 0
Q ss_pred cchHHHHccce-EEEecCCChhHHHHHHHH----H-------HHHcCC--CCCHHHHHHHHHhc---CCCHHHHHHHHHH
Q 036794 566 ALPHIIISRCQ-KFFFPKMKDADIIYTLQW----I-------ASKEGI--EIDKDALKLIASRS---DGSLRDAEMTLEQ 628 (1152)
Q Consensus 566 kL~~aL~SR~q-vI~F~~p~~~EI~eiL~~----i-------akkeGl--~Id~dALelLAe~s---~GDLR~Ain~LEk 628 (1152)
-+.|.++.|+. ++.|.+++.+++..++.. + +..+++ .++++++++|++.. .-..|.+...|++
T Consensus 294 gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~ 373 (412)
T PRK05342 294 GLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEE 373 (412)
T ss_pred hhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHH
Confidence 03566778887 588999999999888862 2 233454 58999999999972 2346666666666
Q ss_pred H
Q 036794 629 L 629 (1152)
Q Consensus 629 L 629 (1152)
.
T Consensus 374 ~ 374 (412)
T PRK05342 374 I 374 (412)
T ss_pred H
Confidence 4
No 173
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.36 E-value=3.7e-11 Score=142.63 Aligned_cols=214 Identities=14% Similarity=0.176 Sum_probs=137.2
Q ss_pred CcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cceE
Q 036794 419 TFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNIK 496 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dvi 496 (1152)
.|.+++|....+..+...+.. ......+||+|++|||||++|++++........ |+ ...+|..+..... ..++
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~----~~-i~i~c~~~~~~~~~~~lf 210 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKA----PF-IALNMAAIPKDLIESELF 210 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCC----Ce-EeeeCCCCCHHHHHHHhc
Confidence 477899998887777766654 344556999999999999999999987543221 11 1222322211000 0000
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCCC-
Q 036794 497 EVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSSL- 564 (1152)
Q Consensus 497 EIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~~- 564 (1152)
.-......+.... . ......+.++++||||++.|+...|..|+++|++. +.++.||++|+..
T Consensus 211 g~~~g~~~~~~~~-----~-~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l 284 (469)
T PRK10923 211 GHEKGAFTGANTI-----R-QGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNL 284 (469)
T ss_pred CCCCCCCCCCCcC-----C-CCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCH
Confidence 0000000000000 0 00011245679999999999999999999999873 2367899988743
Q ss_pred ------CcchHHHHccceE--EEecCCCh--hHHHHHHHHHH----HHcCC---CCCHHHHHHHHHh-cCCCHHHHHHHH
Q 036794 565 ------DALPHIIISRCQK--FFFPKMKD--ADIIYTLQWIA----SKEGI---EIDKDALKLIASR-SDGSLRDAEMTL 626 (1152)
Q Consensus 565 ------dkL~~aL~SR~qv--I~F~~p~~--~EI~eiL~~ia----kkeGl---~Id~dALelLAe~-s~GDLR~Ain~L 626 (1152)
..+.+.|..|+.. |.++|+.. +++..++..++ ...+. .+++++++.|..+ |+||+|++.|.+
T Consensus 285 ~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i 364 (469)
T PRK10923 285 EQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 (469)
T ss_pred HHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHH
Confidence 2477789999864 55566543 35554444443 33333 4899999999999 999999999999
Q ss_pred HHHHHh--CCCCCHHHHHH
Q 036794 627 EQLSLL--GQRISVPLVQE 643 (1152)
Q Consensus 627 EkLsLl--g~~IT~EdV~e 643 (1152)
++++.. +..|+.+++..
T Consensus 365 ~~~~~~~~~~~i~~~~l~~ 383 (469)
T PRK10923 365 RWLTVMAAGQEVLIQDLPG 383 (469)
T ss_pred HHHHHhCCCCcccHHHCcH
Confidence 999776 44688888754
No 174
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.36 E-value=1.5e-11 Score=154.39 Aligned_cols=208 Identities=19% Similarity=0.279 Sum_probs=139.9
Q ss_pred cccCcHHHHHHHHHHHHh-----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceE
Q 036794 422 DLVGQNLVAQALSNAVMR-----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIK 496 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~-----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dvi 496 (1152)
+..|.+.+++.+.+++.. ...+..++|+||||+|||++++.+|+.++.... .+..+...+..
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~-------------~i~~~~~~d~~ 389 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYV-------------RMALGGVRDEA 389 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE-------------EEEcCCCCCHH
Confidence 488999999998876653 123457999999999999999999998875421 11112111111
Q ss_pred EeCCCC--C--CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHH----HHHHHHHHhh---------------CCC
Q 036794 497 EVGPVG--N--FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDS----WSAISKVVDR---------------APR 553 (1152)
Q Consensus 497 EIdaas--~--~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~ea----qnaLLklLEe---------------pp~ 553 (1152)
++.... . .....+.+.+..+ . ....||+|||+|.++... +++|+.+|+. .-.
T Consensus 390 ~i~g~~~~~~g~~~G~~~~~l~~~---~--~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 390 EIRGHRRTYIGSMPGKLIQKMAKV---G--VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred HhccchhccCCCCCcHHHHHHHhc---C--CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCC
Confidence 111100 0 0112233333222 1 234699999999998764 5899999974 126
Q ss_pred CEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHH-----H-----cCCCCCHHHHHHHHHhc--CCCHHH
Q 036794 554 RVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIAS-----K-----EGIEIDKDALKLIASRS--DGSLRD 621 (1152)
Q Consensus 554 ~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iak-----k-----eGl~Id~dALelLAe~s--~GDLR~ 621 (1152)
+++||+++|... ++++|++||.+|.|.+++.+++..+++..+. + ..+.++++++.+|++.+ +-..|.
T Consensus 465 ~v~~i~TaN~~~-i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~ 543 (784)
T PRK10787 465 DVMFVATSNSMN-IPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRS 543 (784)
T ss_pred ceEEEEcCCCCC-CCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcH
Confidence 888999888875 9999999999999999999999888776663 1 13568999999999763 225666
Q ss_pred HHHHHHHHHHh-------CC-----CCCHHHHHHHHhcc
Q 036794 622 AEMTLEQLSLL-------GQ-----RISVPLVQELVGLI 648 (1152)
Q Consensus 622 Ain~LEkLsLl-------g~-----~IT~EdV~elVg~v 648 (1152)
+...|++++-. ++ .|+.+++.+.++..
T Consensus 544 LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 544 LEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQ 582 (784)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCC
Confidence 66666665311 21 36777777777754
No 175
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.35 E-value=1.5e-11 Score=143.00 Aligned_cols=215 Identities=22% Similarity=0.277 Sum_probs=146.4
Q ss_pred chhhhhCCCCcCccc-C--cHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 410 NLTQKYMPRTFRDLV-G--QNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 410 ~l~eKyRP~sFddLV-G--Qe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+..+| +|+++| | +..+......+... |...+.++||||.|.|||++++++++++....+..
T Consensus 79 ~l~~~y---tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a----------- 144 (408)
T COG0593 79 GLNPKY---TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNA----------- 144 (408)
T ss_pred cCCCCC---chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCc-----------
Confidence 455566 588866 4 33444444444443 33455689999999999999999999887553221
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHH-H-hhCCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhhCCC-CEEEEEE
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDN-M-VTSRPPSQYRIFVFDDCDTLSPD--SWSAISKVVDRAPR-RVVFILV 560 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~-a-~~~P~~a~~kVVIIDEID~Ls~e--aqnaLLklLEepp~-~VifILa 560 (1152)
-++.+.+. .+-.+-+..+.+. + .+.... ...+++||+++.+... .+..|..+++.... .-.+|++
T Consensus 145 --------~v~y~~se-~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvlt 214 (408)
T COG0593 145 --------RVVYLTSE-DFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLT 214 (408)
T ss_pred --------eEEeccHH-HHHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEE
Confidence 12332211 1111111222110 0 001111 3479999999998654 46677777666322 2256666
Q ss_pred cCCC-C---cchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-
Q 036794 561 SSSL-D---ALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL- 632 (1152)
Q Consensus 561 TN~~-d---kL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl- 632 (1152)
+..+ . .+.+.|+||+. .+.+.+|+.+.+..+|...++..++.++++++.+|+.....|+|++...|+++..+
T Consensus 215 sdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a 294 (408)
T COG0593 215 SDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFA 294 (408)
T ss_pred cCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 6543 2 35578999977 68999999999999999999999999999999999999999999999999998655
Q ss_pred ---CCCCCHHHHHHHHhcc
Q 036794 633 ---GQRISVPLVQELVGLI 648 (1152)
Q Consensus 633 ---g~~IT~EdV~elVg~v 648 (1152)
+..||.+.|.+++...
T Consensus 295 ~~~~~~iTi~~v~e~L~~~ 313 (408)
T COG0593 295 LFTKRAITIDLVKEILKDL 313 (408)
T ss_pred HhcCccCcHHHHHHHHHHh
Confidence 3469999999888653
No 176
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=5.4e-12 Score=151.80 Aligned_cols=191 Identities=21% Similarity=0.332 Sum_probs=136.9
Q ss_pred cccCcHHHHHHHHHHHH-----hCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceE
Q 036794 422 DLVGQNLVAQALSNAVM-----RRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIK 496 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~-----~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dvi 496 (1152)
|=.|-+.+++.+.+.+. ...-++.++|.||||+|||++++.||++++..+ +.+..|.-+|.-
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkf-------------vR~sLGGvrDEA 390 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKF-------------VRISLGGVRDEA 390 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCE-------------EEEecCccccHH
Confidence 34577777777665543 234457899999999999999999999999764 233444444444
Q ss_pred EeCCCCCCC----HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH----HHHHHHHHHhh---------------CCC
Q 036794 497 EVGPVGNFD----FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD----SWSAISKVVDR---------------APR 553 (1152)
Q Consensus 497 EIdaas~~~----vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e----aqnaLLklLEe---------------pp~ 553 (1152)
|+-+...+- .+.|.+-+..+. ...-|++|||||+|+.+ -..+||.+|+- .-.
T Consensus 391 EIRGHRRTYIGamPGrIiQ~mkka~-----~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 391 EIRGHRRTYIGAMPGKIIQGMKKAG-----VKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred HhccccccccccCChHHHHHHHHhC-----CcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 443322221 133333333332 23469999999999754 45689988863 126
Q ss_pred CEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHH-----HHcC-----CCCCHHHHHHHHHhc--CCCHHH
Q 036794 554 RVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIA-----SKEG-----IEIDKDALKLIASRS--DGSLRD 621 (1152)
Q Consensus 554 ~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~ia-----kkeG-----l~Id~dALelLAe~s--~GDLR~ 621 (1152)
+|+||+++|..+.+|.+|+.|..+|++..++..|-.++.+.++ +..| +.|+++|+..|+++. +-.+|.
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~ 545 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRN 545 (782)
T ss_pred heEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhH
Confidence 8999999999999999999999999999999998887766543 3344 469999999999883 346888
Q ss_pred HHHHHHHHH
Q 036794 622 AEMTLEQLS 630 (1152)
Q Consensus 622 Ain~LEkLs 630 (1152)
+...|.+++
T Consensus 546 LeR~i~ki~ 554 (782)
T COG0466 546 LEREIAKIC 554 (782)
T ss_pred HHHHHHHHH
Confidence 887777764
No 177
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.34 E-value=2.9e-11 Score=132.66 Aligned_cols=217 Identities=15% Similarity=0.179 Sum_probs=131.3
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc--CCCccceEEeCCCCC
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD--RGKSRNIKEVGPVGN 503 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~--~g~~~dviEIdaas~ 503 (1152)
+..+...+...+..+ ++.++|+||+|+|||++++.+++.+.+..... |..+....... .......+.+.....
T Consensus 28 ~~~~~~~l~~~~~~~--~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~---~~~~~~~~~~~~~l~~i~~~lG~~~~~~ 102 (269)
T TIGR03015 28 HKRAMAYLEYGLSQR--EGFILITGEVGAGKTTLIRNLLKRLDQERVVA---AKLVNTRVDAEDLLRMVAADFGLETEGR 102 (269)
T ss_pred HHHHHHHHHHHHhcC--CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEE---eeeeCCCCCHHHHHHHHHHHcCCCCCCC
Confidence 445566666555533 44689999999999999999999877432110 00000000000 000000001111111
Q ss_pred CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC---CCCEEEEEEcCCCC---c----chHHHHc
Q 036794 504 FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA---PRRVVFILVSSSLD---A----LPHIIIS 573 (1152)
Q Consensus 504 ~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep---p~~VifILaTN~~d---k----L~~aL~S 573 (1152)
.....+..+.+.+......+...+|+|||++.+.....+.|..+.+.. ...+.||++.. ++ . -...+.+
T Consensus 103 ~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~-~~~~~~l~~~~~~~l~~ 181 (269)
T TIGR03015 103 DKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQ-PEFRETLQSPQLQQLRQ 181 (269)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCC-HHHHHHHcCchhHHHHh
Confidence 111222223222211122355679999999999988877665544321 22334444442 22 1 1234667
Q ss_pred cce-EEEecCCChhHHHHHHHHHHHHcC----CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-----CCCCCHHHHHH
Q 036794 574 RCQ-KFFFPKMKDADIIYTLQWIASKEG----IEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-----GQRISVPLVQE 643 (1152)
Q Consensus 574 R~q-vI~F~~p~~~EI~eiL~~iakkeG----l~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-----g~~IT~EdV~e 643 (1152)
|+. .+.+++++.+++.+++...+...| ..+++++++.|++.++|++|.+...++.+... .+.|+.++|.+
T Consensus 182 r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~ 261 (269)
T TIGR03015 182 RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVRE 261 (269)
T ss_pred heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 744 688999999999999999988665 36999999999999999999988877776433 34699999999
Q ss_pred HHhcc
Q 036794 644 LVGLI 648 (1152)
Q Consensus 644 lVg~v 648 (1152)
++...
T Consensus 262 ~~~~~ 266 (269)
T TIGR03015 262 VIAEI 266 (269)
T ss_pred HHHHh
Confidence 88654
No 178
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.34 E-value=3.5e-11 Score=150.24 Aligned_cols=224 Identities=14% Similarity=0.161 Sum_probs=149.1
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR 489 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~ 489 (1152)
.|+++-+-..++.++|.+..+..+...+.+.... .+||+||||||||++|+.+|..+.....+. .. ..|..+..
T Consensus 175 ~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~-n~LLvGppGvGKT~lae~la~~i~~~~vP~----~l-~~~~~~~l 248 (758)
T PRK11034 175 NLNQLARVGGIDPLIGREKELERAIQVLCRRRKN-NPLLVGESGVGKTAIAEGLAWRIVQGDVPE----VM-ADCTIYSL 248 (758)
T ss_pred hHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCC-CeEEECCCCCCHHHHHHHHHHHHHhcCCCc----hh-cCCeEEec
Confidence 3444445556889999999999999888875444 478999999999999999998764322111 00 11111100
Q ss_pred CCccceEEeCCCCCC-C-HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC---------HHHHHHHHHHHhhCCCCEEEE
Q 036794 490 GKSRNIKEVGPVGNF-D-FESILDLLDNMVTSRPPSQYRIFVFDDCDTLS---------PDSWSAISKVVDRAPRRVVFI 558 (1152)
Q Consensus 490 g~~~dviEIdaas~~-~-vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls---------~eaqnaLLklLEepp~~VifI 558 (1152)
.. ..+ +.+.... . ...+..+++.+.. ....||||||+|.+. .++.+.|..+|.. ..+.+|
T Consensus 249 ~~-~~l--laG~~~~Ge~e~rl~~l~~~l~~----~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vI 319 (758)
T PRK11034 249 DI-GSL--LAGTKYRGDFEKRFKALLKQLEQ----DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVI 319 (758)
T ss_pred cH-HHH--hcccchhhhHHHHHHHHHHHHHh----cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEE
Confidence 00 000 0001111 1 2335566665543 234799999999872 2234556666665 678999
Q ss_pred EEcCCCC-----cchHHHHccceEEEecCCChhHHHHHHHHHHH----HcCCCCCHHHHHHHHHhcCC------CHHHHH
Q 036794 559 LVSSSLD-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIAS----KEGIEIDKDALKLIASRSDG------SLRDAE 623 (1152)
Q Consensus 559 LaTN~~d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iak----keGl~Id~dALelLAe~s~G------DLR~Ai 623 (1152)
++||..+ ..+++|.+||+.|.+++|+.++...+|+.+.. ..++.|+++|+..++..+.. -+..++
T Consensus 320 gATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKai 399 (758)
T PRK11034 320 GSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_pred ecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHH
Confidence 9998653 36889999999999999999999999987654 35788999999988776432 345889
Q ss_pred HHHHHHHHhC---------CCCCHHHHHHHHhcc
Q 036794 624 MTLEQLSLLG---------QRISVPLVQELVGLI 648 (1152)
Q Consensus 624 n~LEkLsLlg---------~~IT~EdV~elVg~v 648 (1152)
.+|+.++... ..|+.++|.+++...
T Consensus 400 dlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~ 433 (758)
T PRK11034 400 DVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_pred HHHHHHHHhhccCcccccccccChhhHHHHHHHH
Confidence 9999886421 237778888877543
No 179
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.6e-11 Score=140.47 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=122.1
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHh-----------CCC-CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMR-----------RKV-GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~-----------gri-~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
.|.+|+.|+-.+..++.|.+-+.. |+. ..+||||||||||||+++.|+|+.|++..
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydI------------ 263 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDI------------ 263 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCce------------
Confidence 467899999888877777765543 111 14799999999999999999999998752
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH------------------HHHHHHH
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP------------------DSWSAIS 545 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~------------------eaqnaLL 545 (1152)
..++-.....-++++.|+... ..+.||+|.+||.-.. -.+.-||
T Consensus 264 ------------ydLeLt~v~~n~dLr~LL~~t------~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLL 325 (457)
T KOG0743|consen 264 ------------YDLELTEVKLDSDLRHLLLAT------PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLL 325 (457)
T ss_pred ------------EEeeeccccCcHHHHHHHHhC------CCCcEEEEeecccccccccccccccccccCCcceeehHHhh
Confidence 222222222334588888775 4568999999997511 1355799
Q ss_pred HHHhhCC----CCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Q 036794 546 KVVDRAP----RRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGS 618 (1152)
Q Consensus 546 klLEepp----~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GD 618 (1152)
.+++..- ..-++||+||.+++|+|+|++++. .|.+.--+...+......++.-..
T Consensus 326 NfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~------------------ 387 (457)
T KOG0743|consen 326 NFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE------------------ 387 (457)
T ss_pred hhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC------------------
Confidence 9998743 355899999999999999999665 377766666555554444322111
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 036794 619 LRDAEMTLEQLSLLGQRISVPLVQELVG 646 (1152)
Q Consensus 619 LR~Ain~LEkLsLlg~~IT~EdV~elVg 646 (1152)
--.+...+++ ...+..||+.+|.+.+-
T Consensus 388 ~h~L~~eie~-l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 388 DHRLFDEIER-LIEETEVTPAQVAEELM 414 (457)
T ss_pred CcchhHHHHH-HhhcCccCHHHHHHHHh
Confidence 1233334444 22244688888877653
No 180
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4e-11 Score=129.40 Aligned_cols=171 Identities=19% Similarity=0.228 Sum_probs=119.1
Q ss_pred chhhhhCCC-CcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCC
Q 036794 410 NLTQKYMPR-TFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPK 476 (1152)
Q Consensus 410 ~l~eKyRP~-sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~e 476 (1152)
.+...-+|. ++.|+-|.+-.++.+++++.- -..+.++|+|||||||||.+|+++|+.....+....
T Consensus 143 ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvv- 221 (408)
T KOG0727|consen 143 MLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV- 221 (408)
T ss_pred ccCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeec-
Confidence 333344443 789999988888888887753 234568999999999999999999987554422110
Q ss_pred CCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHH
Q 036794 477 PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAIS 545 (1152)
Q Consensus 477 pcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLL 545 (1152)
|+.. + ...-.-+..-+++++.-+.. ....+|||||+|.+.. +.+..|+
T Consensus 222 -------------gsef--v--qkylgegprmvrdvfrlake----napsiifideidaiatkrfdaqtgadrevqril~ 280 (408)
T KOG0727|consen 222 -------------GSEF--V--QKYLGEGPRMVRDVFRLAKE----NAPSIIFIDEIDAIATKRFDAQTGADREVQRILI 280 (408)
T ss_pred -------------cHHH--H--HHHhccCcHHHHHHHHHHhc----cCCcEEEeehhhhHhhhhccccccccHHHHHHHH
Confidence 1100 0 00111234556676665543 3447999999998743 4566777
Q ss_pred HHHhh-----CCCCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCC
Q 036794 546 KVVDR-----APRRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIE 602 (1152)
Q Consensus 546 klLEe-----pp~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~ 602 (1152)
.+|.. ...++-+|++||..+-++|+|++.+. .|.|+.++..+..-.+..++.+.++.
T Consensus 281 ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls 345 (408)
T KOG0727|consen 281 ELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS 345 (408)
T ss_pred HHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC
Confidence 77765 55799999999999999999998655 59999888888777777777766554
No 181
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=6.2e-12 Score=137.86 Aligned_cols=210 Identities=17% Similarity=0.204 Sum_probs=138.7
Q ss_pred hhhCCCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCC
Q 036794 413 QKYMPRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF 480 (1152)
Q Consensus 413 eKyRP~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~ 480 (1152)
+|-.-.+|.|+-|.+..++.+++++.- -+.+.+++|||+||||||.+|+++|+.....+...
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRv------ 250 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRV------ 250 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhh------
Confidence 343345789999999999999998864 24556899999999999999999998755443211
Q ss_pred CCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHh
Q 036794 481 CNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKVVD 549 (1152)
Q Consensus 481 c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLklLE 549 (1152)
.|+. ++ .....-+..-++++|.-+... ...++||||||.+.. +.|..+|.+|+
T Consensus 251 --------vGse--Li--QkylGdGpklvRqlF~vA~e~----apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLN 314 (440)
T KOG0726|consen 251 --------VGSE--LI--QKYLGDGPKLVRELFRVAEEH----APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN 314 (440)
T ss_pred --------hhHH--HH--HHHhccchHHHHHHHHHHHhc----CCceEEeehhhhhccccccCCCccHHHHHHHHHHHHH
Confidence 0111 00 011123445677777665432 347999999998832 35667777776
Q ss_pred h-----CCCCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHh----cC
Q 036794 550 R-----APRRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASR----SD 616 (1152)
Q Consensus 550 e-----pp~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~----s~ 616 (1152)
. ...++-+|++||..+.|+|+|++... .|.|+.|+......++.-+.. ++.+..++ ++.++.. ++
T Consensus 315 QldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs--~Mtl~~dVnle~li~~kddlSG 392 (440)
T KOG0726|consen 315 QLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTS--RMTLAEDVNLEELIMTKDDLSG 392 (440)
T ss_pred hccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeec--ccchhccccHHHHhhccccccc
Confidence 5 34689999999999999999998765 499999988776665543322 23333332 3333332 55
Q ss_pred CCHHHHHHHHHHHHHhCC--CCCHHHHHHHHh
Q 036794 617 GSLRDAEMTLEQLSLLGQ--RISVPLVQELVG 646 (1152)
Q Consensus 617 GDLR~Ain~LEkLsLlg~--~IT~EdV~elVg 646 (1152)
.++..+..+.--+++-.. .++.+|+.....
T Consensus 393 AdIkAictEaGllAlRerRm~vt~~DF~ka~e 424 (440)
T KOG0726|consen 393 ADIKAICTEAGLLALRERRMKVTMEDFKKAKE 424 (440)
T ss_pred ccHHHHHHHHhHHHHHHHHhhccHHHHHHHHH
Confidence 566666666555555533 477777766553
No 182
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=9.5e-12 Score=148.83 Aligned_cols=191 Identities=23% Similarity=0.365 Sum_probs=137.7
Q ss_pred cccCcHHHHHHHHHHHHhCCC-----CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceE
Q 036794 422 DLVGQNLVAQALSNAVMRRKV-----GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIK 496 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~gri-----~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dvi 496 (1152)
|=.|-+++++.+.+.|.-++. +..+.|+||||+|||++|+.||++++..+. .+..|.-.|+-
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf-------------RfSvGG~tDvA 478 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF-------------RFSVGGMTDVA 478 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE-------------EEeccccccHH
Confidence 456778888888877755432 458999999999999999999999998753 23333334444
Q ss_pred EeCCCCCCC----HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH----HHHHHHHHHHhh---------------CCC
Q 036794 497 EVGPVGNFD----FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP----DSWSAISKVVDR---------------APR 553 (1152)
Q Consensus 497 EIdaas~~~----vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~----eaqnaLLklLEe---------------pp~ 553 (1152)
++-+...+- ...+.+.+..+. -..-+|+|||+|++.. +-..+||.+|+- .-.
T Consensus 479 eIkGHRRTYVGAMPGkiIq~LK~v~-----t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLS 553 (906)
T KOG2004|consen 479 EIKGHRRTYVGAMPGKIIQCLKKVK-----TENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLS 553 (906)
T ss_pred hhcccceeeeccCChHHHHHHHhhC-----CCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchh
Confidence 433221111 244555555553 2346999999999864 235688888763 125
Q ss_pred CEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHH-----H-----cCCCCCHHHHHHHHHhc--CCCHHH
Q 036794 554 RVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIAS-----K-----EGIEIDKDALKLIASRS--DGSLRD 621 (1152)
Q Consensus 554 ~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iak-----k-----eGl~Id~dALelLAe~s--~GDLR~ 621 (1152)
.|.||+++|..+.+|++|+.|..+|.+.-+..+|-+.+.+.++- . +.++|+++|+..|+++. +-.+|.
T Consensus 554 kVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRn 633 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRN 633 (906)
T ss_pred heEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHH
Confidence 78999999999999999999999999999999988887666542 2 34579999988887772 346888
Q ss_pred HHHHHHHHH
Q 036794 622 AEMTLEQLS 630 (1152)
Q Consensus 622 Ain~LEkLs 630 (1152)
+...|++++
T Consensus 634 Lqk~iekI~ 642 (906)
T KOG2004|consen 634 LQKQIEKIC 642 (906)
T ss_pred HHHHHHHHH
Confidence 888877763
No 183
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.31 E-value=4e-11 Score=152.41 Aligned_cols=205 Identities=17% Similarity=0.198 Sum_probs=148.2
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
..+|.++.+|..|+.++|+++.+..+...+.+....+ .||+||||+|||++|+.|+..+.....+.. .
T Consensus 160 ~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n-~lL~G~pGvGKT~l~~~la~~i~~~~~p~~----l------- 227 (852)
T TIGR03346 160 ARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNN-PVLIGEPGVGKTAIVEGLAQRIVNGDVPES----L------- 227 (852)
T ss_pred hhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCc-eEEEcCCCCCHHHHHHHHHHHHhccCCchh----h-------
Confidence 4578899999999999999999999998887766554 679999999999999999998753321110 0
Q ss_pred cCCCccceEEeCCC------CCC-C-HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------HHHHHHHHHHhhC
Q 036794 488 DRGKSRNIKEVGPV------GNF-D-FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------DSWSAISKVVDRA 551 (1152)
Q Consensus 488 ~~g~~~dviEIdaa------s~~-~-vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------eaqnaLLklLEep 551 (1152)
. ...++.++.. ... . ...+..+++.+... ....||||||+|.+.. ++.+.|..+++.
T Consensus 228 -~--~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~---~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~- 300 (852)
T TIGR03346 228 -K--NKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKS---EGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR- 300 (852)
T ss_pred -c--CCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhc---CCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-
Confidence 0 0112222211 111 1 23566677766432 3457999999998852 345666666654
Q ss_pred CCCEEEEEEcCCCC-----cchHHHHccceEEEecCCChhHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC---C-
Q 036794 552 PRRVVFILVSSSLD-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK----EGIEIDKDALKLIASRSDG---S- 618 (1152)
Q Consensus 552 p~~VifILaTN~~d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk----eGl~Id~dALelLAe~s~G---D- 618 (1152)
..+.+|++|+..+ .+++++.+||+.|.++.|+.++...+|+.+... .++.++++++..++..+.+ |
T Consensus 301 -g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r 379 (852)
T TIGR03346 301 -GELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDR 379 (852)
T ss_pred -CceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccccc
Confidence 6789999998653 368899999999999999999999988877654 4677899999988877553 3
Q ss_pred --HHHHHHHHHHHHHh
Q 036794 619 --LRDAEMTLEQLSLL 632 (1152)
Q Consensus 619 --LR~Ain~LEkLsLl 632 (1152)
+..|+.+|+.++..
T Consensus 380 ~lPdkAidlld~a~a~ 395 (852)
T TIGR03346 380 FLPDKAIDLIDEAAAR 395 (852)
T ss_pred CCchHHHHHHHHHHHH
Confidence 56799999987643
No 184
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=3.1e-11 Score=130.18 Aligned_cols=215 Identities=17% Similarity=0.246 Sum_probs=141.0
Q ss_pred hhhhhCCCCcCcccCcHHHHHHHHHHHHhC------------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCC
Q 036794 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRR------------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPC 478 (1152)
Q Consensus 411 l~eKyRP~sFddLVGQe~v~q~Lk~aL~~g------------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epc 478 (1152)
..+|....+++-+-|-+..+..+++.|.-. ..|.++|||||||||||.+|+++|....|.+...
T Consensus 137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firv---- 212 (404)
T KOG0728|consen 137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV---- 212 (404)
T ss_pred hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEe----
Confidence 355554445555556788888888777541 2235799999999999999999999877763211
Q ss_pred CCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHH
Q 036794 479 GFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PDSWSAISKV 547 (1152)
Q Consensus 479 g~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~eaqnaLLkl 547 (1152)
.|+..--.++ .-+..-++++|--++. ..+.+||.||||.+. .+.|..+|.+
T Consensus 213 ----------sgselvqk~i----gegsrmvrelfvmare----hapsiifmdeidsigs~r~e~~~ggdsevqrtmlel 274 (404)
T KOG0728|consen 213 ----------SGSELVQKYI----GEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLEL 274 (404)
T ss_pred ----------chHHHHHHHh----hhhHHHHHHHHHHHHh----cCCceEeeecccccccccccCCCCccHHHHHHHHHH
Confidence 1111000001 1233446666655433 334799999999873 3467777777
Q ss_pred Hhh-----CCCCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-C
Q 036794 548 VDR-----APRRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-S 618 (1152)
Q Consensus 548 LEe-----pp~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-D 618 (1152)
|.. ...++-+|++||..+.++++|++.+. .|.|++|+.+...++|+-..++.++.-. --+..+|+..+| +
T Consensus 275 lnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rg-i~l~kiaekm~gas 353 (404)
T KOG0728|consen 275 LNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRG-INLRKIAEKMPGAS 353 (404)
T ss_pred HHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcc-cCHHHHHHhCCCCc
Confidence 665 45689999999999999999998765 4999999999999999877776543210 125567777555 4
Q ss_pred HHHHHHHHHHHHHh---CCC--CCHHHHHHHHhcc
Q 036794 619 LRDAEMTLEQLSLL---GQR--ISVPLVQELVGLI 648 (1152)
Q Consensus 619 LR~Ain~LEkLsLl---g~~--IT~EdV~elVg~v 648 (1152)
-.++...+-.+.+| ..+ +|.+|++-+++.+
T Consensus 354 gaevk~vcteagm~alrerrvhvtqedfemav~kv 388 (404)
T KOG0728|consen 354 GAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 388 (404)
T ss_pred cchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHH
Confidence 44555555554444 222 6777777666543
No 185
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=5.3e-11 Score=135.19 Aligned_cols=158 Identities=22% Similarity=0.287 Sum_probs=115.4
Q ss_pred cCcccCcHHHHHHHHHHHHh-------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc
Q 036794 420 FRDLVGQNLVAQALSNAVMR-------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS 492 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~-------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~ 492 (1152)
|+++|-+......|...... ...-..+|||||||||||.+|+-||...+-.. .+..|..
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDY--------------A~mTGGD 419 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDY--------------AIMTGGD 419 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCce--------------ehhcCCC
Confidence 89999988877777654432 11123799999999999999999999866442 1222221
Q ss_pred cceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCC---------CHH---HHHHHHHHHhhCCCCEEEEEE
Q 036794 493 RNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTL---------SPD---SWSAISKVVDRAPRRVVFILV 560 (1152)
Q Consensus 493 ~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~L---------s~e---aqnaLLklLEepp~~VifILa 560 (1152)
+.|.+..++..|-++|+.+... .++-++||||+|.+ +.+ +.|+||----+...+++++++
T Consensus 420 -----VAPlG~qaVTkiH~lFDWakkS---~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlA 491 (630)
T KOG0742|consen 420 -----VAPLGAQAVTKIHKLFDWAKKS---RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLA 491 (630)
T ss_pred -----ccccchHHHHHHHHHHHHHhhc---ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEec
Confidence 2233445677788888887544 45568999999976 222 344444433446789999999
Q ss_pred cCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHc
Q 036794 561 SSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKE 599 (1152)
Q Consensus 561 TN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakke 599 (1152)
||.|..++-++-.|+. ++.|+.|..++...+|..++.++
T Consensus 492 tNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 492 TNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred cCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence 9999999999999998 69999999999999888777653
No 186
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=6.2e-12 Score=136.39 Aligned_cols=176 Identities=19% Similarity=0.258 Sum_probs=124.5
Q ss_pred CCcCcccCcHHHHHHHHHHHHhC------------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMRR------------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~g------------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.++.|+-|..+.++.|.+.+... ..+.++|+|||||||||.+|+++|+..+. |+
T Consensus 174 vty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda--------------cf 239 (435)
T KOG0729|consen 174 VTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA--------------CF 239 (435)
T ss_pred cccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc--------------eE
Confidence 47899999999999998887652 33458999999999999999999976542 22
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhh----
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PDSWSAISKVVDR---- 550 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~eaqnaLLklLEe---- 550 (1152)
--..|+..-- ..-.-+..-++++++-+.. .+-.+||+||+|.+. .+.|..+|.++..
T Consensus 240 irvigselvq----kyvgegarmvrelf~mart----kkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgf 311 (435)
T KOG0729|consen 240 IRVIGSELVQ----KYVGEGARMVRELFEMART----KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGF 311 (435)
T ss_pred EeehhHHHHH----HHhhhhHHHHHHHHHHhcc----cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCC
Confidence 2111211100 1112345667888877653 344799999999873 3456677777665
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC
Q 036794 551 -APRRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASRSDG 617 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~s~G 617 (1152)
|..++-++++||.++.|+++|++... .+.|..|+.+....+++-+++.. .++.+. .++|+..++.
T Consensus 312 dprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksm--sverdir~ellarlcpn 381 (435)
T KOG0729|consen 312 DPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM--SVERDIRFELLARLCPN 381 (435)
T ss_pred CCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecccc--ccccchhHHHHHhhCCC
Confidence 66799999999999999999988655 59999999988877776555543 344443 5666666544
No 187
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.30 E-value=1.3e-11 Score=119.74 Aligned_cols=109 Identities=28% Similarity=0.431 Sum_probs=83.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCC------CCCCHHHHHHHHHHHhhC
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPV------GNFDFESILDLLDNMVTS 519 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaa------s~~~vdeIreLle~a~~~ 519 (1152)
+||+||||||||++|+.+|+.++.. +++++.. .......+..++..+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~------------------------~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~ 56 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP------------------------FIEIDGSELISSYAGDSEQKIRDFFKKAKKS 56 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE------------------------EEEEETTHHHTSSTTHHHHHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc------------------------ccccccccccccccccccccccccccccccc
Confidence 6899999999999999999998643 2222211 112345677777776544
Q ss_pred CCCCCceEEEEeCCCCCCHHH-----------HHHHHHHHhhCCC---CEEEEEEcCCCCcchHHHH-ccceE-EEec
Q 036794 520 RPPSQYRIFVFDDCDTLSPDS-----------WSAISKVVDRAPR---RVVFILVSSSLDALPHIII-SRCQK-FFFP 581 (1152)
Q Consensus 520 P~~a~~kVVIIDEID~Ls~ea-----------qnaLLklLEepp~---~VifILaTN~~dkL~~aL~-SR~qv-I~F~ 581 (1152)
. ...||||||+|.+.... .+.|+..++.... .++||++||.++.+++++. +||.. |.|+
T Consensus 57 ~---~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 57 A---KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp S---TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred c---cceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 3 35899999999997765 7788999988554 5999999999999999999 99985 6554
No 188
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.29 E-value=2.1e-11 Score=154.61 Aligned_cols=205 Identities=16% Similarity=0.189 Sum_probs=146.1
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
..+++++.+|..+++++|+++.+..+...+.+...++ +||+||||||||++|+.||..+.....+..
T Consensus 165 ~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n-~lL~G~pGvGKT~l~~~la~~i~~~~vp~~------------ 231 (857)
T PRK10865 165 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPEG------------ 231 (857)
T ss_pred hhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCc-eEEECCCCCCHHHHHHHHHHHhhcCCCchh------------
Confidence 4578889999999999999999998888887766554 689999999999999999998754321110
Q ss_pred cCCCccceEEeCC------CCCC-C-HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------HHHHHHHHHHhhC
Q 036794 488 DRGKSRNIKEVGP------VGNF-D-FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------DSWSAISKVVDRA 551 (1152)
Q Consensus 488 ~~g~~~dviEIda------as~~-~-vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------eaqnaLLklLEep 551 (1152)
..+ ..++.++. .... . ...++.+++.+... ....||||||+|.+.. ++.+.|...|+.
T Consensus 232 l~~--~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~---~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~- 305 (857)
T PRK10865 232 LKG--RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQ---EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR- 305 (857)
T ss_pred hCC--CEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHc---CCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-
Confidence 000 11222211 1111 1 23467777765432 3457999999999853 257778888865
Q ss_pred CCCEEEEEEcCCCC-----cchHHHHccceEEEecCCChhHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC-----
Q 036794 552 PRRVVFILVSSSLD-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK----EGIEIDKDALKLIASRSDG----- 617 (1152)
Q Consensus 552 p~~VifILaTN~~d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk----eGl~Id~dALelLAe~s~G----- 617 (1152)
..+.+|++|+..+ .+++++.+||+.|.+..|+.++...+|+.+... .++.++++++...+..+.+
T Consensus 306 -g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~ 384 (857)
T PRK10865 306 -GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADR 384 (857)
T ss_pred -CCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCC
Confidence 6889999998655 378899999999999999999999988877654 3678899988876555432
Q ss_pred -CHHHHHHHHHHHHHh
Q 036794 618 -SLRDAEMTLEQLSLL 632 (1152)
Q Consensus 618 -DLR~Ain~LEkLsLl 632 (1152)
-...|+.+++.++..
T Consensus 385 ~~pdkAi~LiD~aaa~ 400 (857)
T PRK10865 385 QLPDKAIDLIDEAASS 400 (857)
T ss_pred CCChHHHHHHHHHhcc
Confidence 234566677766543
No 189
>PRK15115 response regulator GlrR; Provisional
Probab=99.29 E-value=1.7e-10 Score=136.03 Aligned_cols=214 Identities=16% Similarity=0.129 Sum_probs=129.7
Q ss_pred CcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cceEEe
Q 036794 421 RDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNIKEV 498 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dviEI 498 (1152)
..++|....+..+...+.. ......++|+|++|||||++|+++++....... | .....|..+..... ..++..
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~----~-f~~i~c~~~~~~~~~~~lfg~ 208 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASK----P-FIAINCGALPEQLLESELFGH 208 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCC----C-eEEEeCCCCCHHHHHHHhcCC
Confidence 3578877666555444333 444556899999999999999999987543211 1 11122222210000 000000
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-----------CCEEEEEEcCCC---
Q 036794 499 GPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-----------RRVVFILVSSSL--- 564 (1152)
Q Consensus 499 daas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-----------~~VifILaTN~~--- 564 (1152)
......+... ........+..++|||||++.|+...|..|+++|++.. .++++|++|+..
T Consensus 209 ~~~~~~~~~~------~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~ 282 (444)
T PRK15115 209 ARGAFTGAVS------NREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPK 282 (444)
T ss_pred CcCCCCCCcc------CCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHH
Confidence 0000000000 00000112456799999999999999999999998732 267888888743
Q ss_pred ----CcchHHHHccceE--EEecCCCh--hHHHHHHHHHHH----HcC---CCCCHHHHHHHHHh-cCCCHHHHHHHHHH
Q 036794 565 ----DALPHIIISRCQK--FFFPKMKD--ADIIYTLQWIAS----KEG---IEIDKDALKLIASR-SDGSLRDAEMTLEQ 628 (1152)
Q Consensus 565 ----dkL~~aL~SR~qv--I~F~~p~~--~EI~eiL~~iak----keG---l~Id~dALelLAe~-s~GDLR~Ain~LEk 628 (1152)
..+.+.+..++.. |.++++.. +++..++..+++ ..+ ..++++|++.|..+ |+||+|++.|.|++
T Consensus 283 ~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~ 362 (444)
T PRK15115 283 AMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQ 362 (444)
T ss_pred HHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHH
Confidence 1355667777775 44454433 244444444433 333 24899999999999 89999999999999
Q ss_pred HHHh--CCCCCHHHHHHHH
Q 036794 629 LSLL--GQRISVPLVQELV 645 (1152)
Q Consensus 629 LsLl--g~~IT~EdV~elV 645 (1152)
++.. +..|+.+++...+
T Consensus 363 ~~~~~~~~~i~~~~l~~~~ 381 (444)
T PRK15115 363 CVALTSSPVISDALVEQAL 381 (444)
T ss_pred HHHhCCCCccChhhhhhhh
Confidence 8766 3468888876544
No 190
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.28 E-value=2.6e-10 Score=134.65 Aligned_cols=216 Identities=13% Similarity=0.159 Sum_probs=132.9
Q ss_pred CcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cceE
Q 036794 419 TFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNIK 496 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dvi 496 (1152)
.+..++|....+..+...+.. ......+|++|++||||+++|++++........ |+ ....|..+..... ..++
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~----~~-~~i~c~~~~~~~~~~~lf 215 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKG----PF-IKVNCAALPESLLESELF 215 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCC----Ce-EEEECCCCCHHHHHHHhc
Confidence 356789988777666655544 444556999999999999999999886442211 11 1112222211000 0000
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCCC-
Q 036794 497 EVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSSL- 564 (1152)
Q Consensus 497 EIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~~- 564 (1152)
........+... .. ......+.+++|||||++.|+...|..|+.+|++. +.++.+|++|+..
T Consensus 216 g~~~~~~~~~~~-----~~-~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l 289 (457)
T PRK11361 216 GHEKGAFTGAQT-----LR-QGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDL 289 (457)
T ss_pred CCCCCCCCCCCC-----CC-CCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCH
Confidence 000000000000 00 00011245689999999999999999999999862 2457899988743
Q ss_pred ------CcchHHHHccceEE--EecCCCh--hHHHHH----HHHHHHHcC---CCCCHHHHHHHHHh-cCCCHHHHHHHH
Q 036794 565 ------DALPHIIISRCQKF--FFPKMKD--ADIIYT----LQWIASKEG---IEIDKDALKLIASR-SDGSLRDAEMTL 626 (1152)
Q Consensus 565 ------dkL~~aL~SR~qvI--~F~~p~~--~EI~ei----L~~iakkeG---l~Id~dALelLAe~-s~GDLR~Ain~L 626 (1152)
..+.+.+..|+..+ .++++.. +++..+ +.......+ ..+++++++.|..+ |+||+|++.+.|
T Consensus 290 ~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~ 369 (457)
T PRK11361 290 QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVI 369 (457)
T ss_pred HHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHH
Confidence 24666788887754 4444442 344433 333333333 35899999999999 999999999999
Q ss_pred HHHHHh--CCCCCHHHHHHHH
Q 036794 627 EQLSLL--GQRISVPLVQELV 645 (1152)
Q Consensus 627 EkLsLl--g~~IT~EdV~elV 645 (1152)
++++.. +..|+.+++...+
T Consensus 370 ~~~~~~~~~~~i~~~~l~~~~ 390 (457)
T PRK11361 370 ERAVVMNSGPIIFSEDLPPQI 390 (457)
T ss_pred HHHHHhCCCCcccHHHChHhh
Confidence 998766 3458888876433
No 191
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.3e-11 Score=135.76 Aligned_cols=172 Identities=18% Similarity=0.220 Sum_probs=119.0
Q ss_pred CcCcccCcHHHHHHHHHHHHh---------C-CC-CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 419 TFRDLVGQNLVAQALSNAVMR---------R-KV-GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~---------g-ri-~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
.|+|+.|-+.++++|++++.- | +. -.++||||||||||+.+|+++|.+.+..
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST----------------- 193 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST----------------- 193 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-----------------
Confidence 579999999999999998632 2 22 2589999999999999999999998743
Q ss_pred cCCCccceEEeCCCCC----CC--HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH-----------HHHHHHHHHhh
Q 036794 488 DRGKSRNIKEVGPVGN----FD--FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD-----------SWSAISKVVDR 550 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~----~~--vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e-----------aqnaLLklLEe 550 (1152)
++.+..... .+ -.-+..+++-+ ......||||||||.|... .-..||--|+.
T Consensus 194 -------FFSvSSSDLvSKWmGESEkLVknLFemA----Re~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqG 262 (439)
T KOG0739|consen 194 -------FFSVSSSDLVSKWMGESEKLVKNLFEMA----RENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQG 262 (439)
T ss_pred -------eEEeehHHHHHHHhccHHHHHHHHHHHH----HhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhc
Confidence 222211100 11 12244444443 3356689999999988321 12345555554
Q ss_pred ---CCCCEEEEEEcCCCCcchHHHHccceE-EEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Q 036794 551 ---APRRVVFILVSSSLDALPHIIISRCQK-FFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGS 618 (1152)
Q Consensus 551 ---pp~~VifILaTN~~dkL~~aL~SR~qv-I~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GD 618 (1152)
....+.++.+||-|-.|+.+|++|+.. |.++.|........++-.+..-...+++..+..|+..++|-
T Consensus 263 VG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 263 VGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGY 334 (439)
T ss_pred cccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCC
Confidence 345778888889999999999999994 77777766665555554444444468888999999997773
No 192
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.26 E-value=2.7e-10 Score=124.52 Aligned_cols=190 Identities=22% Similarity=0.297 Sum_probs=137.9
Q ss_pred hhCCCCcCcccCcHHHHHHHHHH---HHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCC
Q 036794 414 KYMPRTFRDLVGQNLVAQALSNA---VMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490 (1152)
Q Consensus 414 KyRP~sFddLVGQe~v~q~Lk~a---L~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g 490 (1152)
...|..+++|+|-+..++.|.+. ...|..++.+||+|++|||||++++++..++....
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G------------------- 80 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG------------------- 80 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC-------------------
Confidence 34566799999988888777644 44588888999999999999999999998876442
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-HHHHHHHHHHhh----CCCCEEEEEEcCCCC
Q 036794 491 KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-DSWSAISKVVDR----APRRVVFILVSSSLD 565 (1152)
Q Consensus 491 ~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-eaqnaLLklLEe----pp~~VifILaTN~~d 565 (1152)
.-++++... ++..+.++++.+...| .+-|||+|+...=.. .....|..+||. .|.+|+|.+++|.-+
T Consensus 81 --LRlIev~k~---~L~~l~~l~~~l~~~~---~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 81 --LRLIEVSKE---DLGDLPELLDLLRDRP---YKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred --ceEEEECHH---HhccHHHHHHHHhcCC---CCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 226676543 3445556666665444 346899998654333 344566666654 788999999988543
Q ss_pred cchH-----------------------HHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCH-----HHHHHHHHhcC
Q 036794 566 ALPH-----------------------IIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDK-----DALKLIASRSD 616 (1152)
Q Consensus 566 kL~~-----------------------aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~-----dALelLAe~s~ 616 (1152)
.+++ +|..|+- .+.|.+++.++..+++...+++.|+.+++ +|+++-..+.+
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 2222 2555665 69999999999999999999999999995 45555555556
Q ss_pred CCHHHHHHHHHHHH
Q 036794 617 GSLRDAEMTLEQLS 630 (1152)
Q Consensus 617 GDLR~Ain~LEkLs 630 (1152)
.+.|.|.+.++.+.
T Consensus 233 RSGRtA~QF~~~l~ 246 (249)
T PF05673_consen 233 RSGRTARQFIDDLA 246 (249)
T ss_pred CCHHHHHHHHHHHh
Confidence 68999888877653
No 193
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=99.26 E-value=4.3e-11 Score=120.32 Aligned_cols=124 Identities=28% Similarity=0.430 Sum_probs=103.2
Q ss_pred CCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcch------hH
Q 036794 636 ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR------HR 709 (1152)
Q Consensus 636 IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~------~~ 709 (1152)
||.++|.+++|.+..+.++++++++..+|..+++..+++++..|.||..++..|..++|+++..+....... ..
T Consensus 1 It~e~V~~~lG~v~~~~i~~l~~ai~~~d~~~~l~~~~~l~~~G~d~~~~l~~L~~~~R~ll~~k~~~~~~~~~~~~~~~ 80 (143)
T PF12169_consen 1 ITAEDVREILGLVDEEQIFELLDAILEGDAAEALELLNELLEQGKDPKQFLDDLIEYLRDLLLYKITGDKSNLLELSEEE 80 (143)
T ss_dssp B-HHHHHHHHTHTSTHHHHHHHHHHHTT-HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHTTSGGGS-SG--CTTT
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCchhhcccCCHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999776542111 01
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCC
Q 036794 710 RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760 (1152)
Q Consensus 710 ~~~~~r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~ 760 (1152)
...+. .....++.+.|.++++.|.+++.++|++.+|+++||++++++|..
T Consensus 81 ~~~~~-~~a~~~~~~~l~~~~~~l~~~~~~lr~s~~pr~~lE~~llrl~~~ 130 (143)
T PF12169_consen 81 EEKLK-ELAKKFSPERLQRILQILLEAENELRYSSNPRILLEMALLRLCQL 130 (143)
T ss_dssp HHHHH-HHHHHS-HHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHT
T ss_pred HHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 11121 124579999999999999999999999999999999999999964
No 194
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.26 E-value=8.9e-11 Score=147.21 Aligned_cols=179 Identities=17% Similarity=0.188 Sum_probs=124.9
Q ss_pred CCcCcccCcHHHHHHHHHHHHhC------------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMRR------------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~g------------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|++|+|.+.+++.|.+.+... ..+.++|||||||||||++|+++|++++...... .|.
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i--------~~~ 246 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISI--------NGP 246 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEE--------ecH
Confidence 47999999999999998877431 3446899999999999999999999886432110 000
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhhC--C
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKVVDRA--P 552 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLklLEep--p 552 (1152)
.+. ..........++.+++.+.. ....||||||+|.+.. ..++.|+.+|+.. .
T Consensus 247 ~i~----------~~~~g~~~~~l~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~ 312 (733)
T TIGR01243 247 EIM----------SKYYGESEERLREIFKEAEE----NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR 312 (733)
T ss_pred HHh----------cccccHHHHHHHHHHHHHHh----cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC
Confidence 000 00001123456777776543 2347999999998742 3566788888763 3
Q ss_pred CCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCC-HHHHHHHHHhcCCCHH
Q 036794 553 RRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEID-KDALKLIASRSDGSLR 620 (1152)
Q Consensus 553 ~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id-~dALelLAe~s~GDLR 620 (1152)
..+++|++||.++.+++++++ |+. .+.|+.|+..+..++|+.... ++.+. +..++.++..+.|-..
T Consensus 313 ~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~--~~~l~~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 313 GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR--NMPLAEDVDLDKLAEVTHGFVG 382 (733)
T ss_pred CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc--CCCCccccCHHHHHHhCCCCCH
Confidence 467888899999999999887 554 588999999999999986554 34443 3347778888777433
No 195
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.25 E-value=1e-10 Score=137.12 Aligned_cols=190 Identities=24% Similarity=0.301 Sum_probs=119.9
Q ss_pred cccCcHHHHHHHHHHHHh----------CC-------CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 422 DLVGQNLVAQALSNAVMR----------RK-------VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~----------gr-------i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
.++||++++..|..++.. .. ....+||+||+|+|||++|+++|+.++..+... .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~--------da 149 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIA--------DA 149 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEe--------ch
Confidence 378999999999877721 11 124699999999999999999999886432110 11
Q ss_pred ccccCCCccceEEeCCCCCCCHH--H-HHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHH
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFE--S-ILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKV 547 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vd--e-IreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLkl 547 (1152)
..+ ...+..+.+ . +..++......-..+.+.||||||+|.++. +.|++||++
T Consensus 150 ~~L-----------~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~i 218 (413)
T TIGR00382 150 TTL-----------TEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKI 218 (413)
T ss_pred hhc-----------cccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHH
Confidence 111 111222221 1 222222211111124567999999999976 589999999
Q ss_pred HhhC-------------CCCEEEEEEcCC----------------------------C---------C------------
Q 036794 548 VDRA-------------PRRVVFILVSSS----------------------------L---------D------------ 565 (1152)
Q Consensus 548 LEep-------------p~~VifILaTN~----------------------------~---------d------------ 565 (1152)
|+.. -.++++|+++|- . +
T Consensus 219 LeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~ 298 (413)
T TIGR00382 219 IEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVK 298 (413)
T ss_pred hhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHH
Confidence 9641 124455555442 0 0
Q ss_pred -cchHHHHccce-EEEecCCChhHHHHHHHH----HHH-------HcCC--CCCHHHHHHHHHhc---CCCHHHHHHHHH
Q 036794 566 -ALPHIIISRCQ-KFFFPKMKDADIIYTLQW----IAS-------KEGI--EIDKDALKLIASRS---DGSLRDAEMTLE 627 (1152)
Q Consensus 566 -kL~~aL~SR~q-vI~F~~p~~~EI~eiL~~----iak-------keGl--~Id~dALelLAe~s---~GDLR~Ain~LE 627 (1152)
-+.|.++.|+. ++.|.+++.+++..++.. +.+ ..|+ .++++|+++|++.. .-..|.+...++
T Consensus 299 ~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie 378 (413)
T TIGR00382 299 FGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVE 378 (413)
T ss_pred HhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHH
Confidence 04567888886 578999999999888765 222 1244 57999999999982 235677777777
Q ss_pred HHH
Q 036794 628 QLS 630 (1152)
Q Consensus 628 kLs 630 (1152)
+..
T Consensus 379 ~~l 381 (413)
T TIGR00382 379 GLL 381 (413)
T ss_pred Hhh
Confidence 753
No 196
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.25 E-value=7.3e-11 Score=149.56 Aligned_cols=202 Identities=18% Similarity=0.176 Sum_probs=145.1
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR 489 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~ 489 (1152)
.|+++-+...|+.++|++..++.+..++......+ +||+||||||||++|+.+|..+.....+..
T Consensus 168 ~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n-~lL~G~pGvGKTal~~~la~~i~~~~vp~~-------------- 232 (821)
T CHL00095 168 NLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNN-PILIGEPGVGKTAIAEGLAQRIVNRDVPDI-------------- 232 (821)
T ss_pred HHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCC-eEEECCCCCCHHHHHHHHHHHHHhCCCChh--------------
Confidence 45555667789999999999999999998766554 689999999999999999998754322110
Q ss_pred CCccceEEeCCC------CCCC--HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------HHHHHHHHHHhhCCC
Q 036794 490 GKSRNIKEVGPV------GNFD--FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------DSWSAISKVVDRAPR 553 (1152)
Q Consensus 490 g~~~dviEIdaa------s~~~--vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------eaqnaLLklLEepp~ 553 (1152)
-....+++++.. .+.+ .+.+..+++.+.. ....|+||||+|.+.. ++.+.|..+|.. .
T Consensus 233 l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~----~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g 306 (821)
T CHL00095 233 LEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQE----NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--G 306 (821)
T ss_pred hcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHh----cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--C
Confidence 001123333321 1112 2356777777643 2347999999998743 245666667765 6
Q ss_pred CEEEEEEcCCCC-----cchHHHHccceEEEecCCChhHHHHHHHHHHH----HcCCCCCHHHHHHHHHhcCCC------
Q 036794 554 RVVFILVSSSLD-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIAS----KEGIEIDKDALKLIASRSDGS------ 618 (1152)
Q Consensus 554 ~VifILaTN~~d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iak----keGl~Id~dALelLAe~s~GD------ 618 (1152)
.+.+|++|+..+ ...+.+.+||+.|.+..++..+...+++.+.. ..++.++++++..++..+.+-
T Consensus 307 ~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~l 386 (821)
T CHL00095 307 ELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFL 386 (821)
T ss_pred CcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccC
Confidence 788999998543 35678999999999999999988887776543 356779999999999887652
Q ss_pred HHHHHHHHHHHHHh
Q 036794 619 LRDAEMTLEQLSLL 632 (1152)
Q Consensus 619 LR~Ain~LEkLsLl 632 (1152)
+..++..|+.++..
T Consensus 387 Pdkaidlld~a~a~ 400 (821)
T CHL00095 387 PDKAIDLLDEAGSR 400 (821)
T ss_pred chHHHHHHHHHHHH
Confidence 56799999987543
No 197
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.23 E-value=4.5e-11 Score=143.07 Aligned_cols=207 Identities=16% Similarity=0.142 Sum_probs=131.6
Q ss_pred CcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cceEEeCCCC
Q 036794 425 GQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNIKEVGPVG 502 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dviEIdaas 502 (1152)
+....++++...+.+ ....-.+|++|++||||..+|++|++... ...+ + ..-+|..+..... ..+|...+..
T Consensus 317 ~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~-~~gp----f-vAvNCaAip~~liesELFGy~~Ga 390 (606)
T COG3284 317 LLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSE-AAGP----F-VAVNCAAIPEALIESELFGYVAGA 390 (606)
T ss_pred ccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhccc-ccCC----e-EEEEeccchHHhhhHHHhccCccc
Confidence 444444444433322 33334589999999999999999998755 2211 1 1223333321110 1111111111
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh----------CCCCEEEEEEcCCC-------C
Q 036794 503 NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR----------APRRVVFILVSSSL-------D 565 (1152)
Q Consensus 503 ~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe----------pp~~VifILaTN~~-------d 565 (1152)
.++. ..+........+..+.+|+|||+.|+.+.|..||++|++ .+.++.+|.+|+.. .
T Consensus 391 fTga-----~~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g 465 (606)
T COG3284 391 FTGA-----RRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQG 465 (606)
T ss_pred cccc-----hhccccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcC
Confidence 1110 011112223346788999999999999999999999998 34578889998753 3
Q ss_pred cchHHHHccceEEEecCCChhHHH---HHHHHHHHHc---CCCCCHHHHHHHHHh-cCCCHHHHHHHHHHHHHh--CCCC
Q 036794 566 ALPHIIISRCQKFFFPKMKDADII---YTLQWIASKE---GIEIDKDALKLIASR-SDGSLRDAEMTLEQLSLL--GQRI 636 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~---eiL~~iakke---Gl~Id~dALelLAe~-s~GDLR~Ain~LEkLsLl--g~~I 636 (1152)
.+.+.|+.|+..+.+..|+..+.. ..|.++..++ .+.++++++..|..+ |+||+|++.|.|+.++++ ++.|
T Consensus 466 ~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~ 545 (606)
T COG3284 466 RFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRI 545 (606)
T ss_pred CchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCCee
Confidence 578889999997666555554433 3444444443 578999999988887 999999999999999877 4456
Q ss_pred CHHHHH
Q 036794 637 SVPLVQ 642 (1152)
Q Consensus 637 T~EdV~ 642 (1152)
...|+.
T Consensus 546 ~~~dlp 551 (606)
T COG3284 546 RVSDLP 551 (606)
T ss_pred EcccCC
Confidence 555443
No 198
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.22 E-value=3.4e-10 Score=134.00 Aligned_cols=215 Identities=14% Similarity=0.160 Sum_probs=136.9
Q ss_pred cCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCcc-ceEE
Q 036794 420 FRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSR-NIKE 497 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~-dviE 497 (1152)
+..++|....+..+...+.. ......+++.|++||||+++|++++........ |+ +..+|..+...... .++.
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~----~~-~~~~c~~~~~~~~~~~lfg 207 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANG----PF-IALNMAAIPKDLIESELFG 207 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCC----Ce-EEEeCCCCCHHHHHHHhcC
Confidence 45688988777766655543 333456899999999999999999886543211 11 12223222110000 0000
Q ss_pred eCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-----------CCEEEEEEcCCC--
Q 036794 498 VGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-----------RRVVFILVSSSL-- 564 (1152)
Q Consensus 498 Idaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-----------~~VifILaTN~~-- 564 (1152)
-......+.. . ........+.+++|||||++.|+...|..|+++|++.. .++.+|++|+..
T Consensus 208 ~~~~~~~~~~--~----~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~ 281 (463)
T TIGR01818 208 HEKGAFTGAN--T----RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLE 281 (463)
T ss_pred CCCCCCCCcc--c----CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHH
Confidence 0000000000 0 00000112456899999999999999999999998631 367888888743
Q ss_pred -----CcchHHHHccce--EEEecCCC--hhHHHHHHHHHH----HHcC---CCCCHHHHHHHHHh-cCCCHHHHHHHHH
Q 036794 565 -----DALPHIIISRCQ--KFFFPKMK--DADIIYTLQWIA----SKEG---IEIDKDALKLIASR-SDGSLRDAEMTLE 627 (1152)
Q Consensus 565 -----dkL~~aL~SR~q--vI~F~~p~--~~EI~eiL~~ia----kkeG---l~Id~dALelLAe~-s~GDLR~Ain~LE 627 (1152)
..+.+.|..|+. .|.++++. .+++..++..++ ...+ ..+++++++.|..+ |+||+|++.|.++
T Consensus 282 ~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~ 361 (463)
T TIGR01818 282 ALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCR 361 (463)
T ss_pred HHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHH
Confidence 246667888877 46666666 456666555443 3334 46899999999999 9999999999999
Q ss_pred HHHHhC--CCCCHHHHHHHH
Q 036794 628 QLSLLG--QRISVPLVQELV 645 (1152)
Q Consensus 628 kLsLlg--~~IT~EdV~elV 645 (1152)
+++... ..|+.+++...+
T Consensus 362 ~~~~~~~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 362 WLTVMASGDEVLVSDLPAEL 381 (463)
T ss_pred HHHHhCCCCcccHHhchHHH
Confidence 988763 458888876544
No 199
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=8.9e-11 Score=136.74 Aligned_cols=177 Identities=16% Similarity=0.176 Sum_probs=128.6
Q ss_pred hhhCCCCcCcccCcHHHHHHHHHHHHhC-----------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCC
Q 036794 413 QKYMPRTFRDLVGQNLVAQALSNAVMRR-----------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFC 481 (1152)
Q Consensus 413 eKyRP~sFddLVGQe~v~q~Lk~aL~~g-----------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c 481 (1152)
..-++..|+|+.|.+.+.+.+.+++.-. .....+||.||||||||.++++||.+.+..+
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atf---------- 214 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATF---------- 214 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceE----------
Confidence 3445567899999999999988776431 2234799999999999999999999977542
Q ss_pred CccccccCCCccceEEeCCCC----CCC--HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH-----------H-HHH
Q 036794 482 NSCISHDRGKSRNIKEVGPVG----NFD--FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD-----------S-WSA 543 (1152)
Q Consensus 482 ~~c~~i~~g~~~dviEIdaas----~~~--vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e-----------a-qna 543 (1152)
+.+.+.+ ..| ..-++.++.-+.. ..+.|+||||+|.+... . .+.
T Consensus 215 --------------f~iSassLtsK~~Ge~eK~vralf~vAr~----~qPsvifidEidslls~Rs~~e~e~srr~ktef 276 (428)
T KOG0740|consen 215 --------------FNISASSLTSKYVGESEKLVRALFKVARS----LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEF 276 (428)
T ss_pred --------------eeccHHHhhhhccChHHHHHHHHHHHHHh----cCCeEEEechhHHHHhhcCCcccccchhhhhHH
Confidence 2222111 111 2234555544432 45589999999987321 1 123
Q ss_pred HHHHHh---hCCCCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Q 036794 544 ISKVVD---RAPRRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG 617 (1152)
Q Consensus 544 LLklLE---epp~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G 617 (1152)
|++.+- .+..++++|.|||.|..++++++.|++ ++.++.|+.+....++...+.+.+..+.+..+..|++.++|
T Consensus 277 Liq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Teg 354 (428)
T KOG0740|consen 277 LLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEG 354 (428)
T ss_pred HhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence 333322 155689999999999999999999998 47789999999999999999988888899999999999665
No 200
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.18 E-value=2.6e-10 Score=132.95 Aligned_cols=107 Identities=20% Similarity=0.293 Sum_probs=82.6
Q ss_pred CceEEEEeCCCCCC------------HHHHHHHHHHHhhC----------CCCEEEEEEcC----CCCcchHHHHccceE
Q 036794 524 QYRIFVFDDCDTLS------------PDSWSAISKVVDRA----------PRRVVFILVSS----SLDALPHIIISRCQK 577 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls------------~eaqnaLLklLEep----------p~~VifILaTN----~~dkL~~aL~SR~qv 577 (1152)
..+||||||||++. ..+|..||+++|.. ..++.||++.. .+..|.|.|.-|+.+
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 56899999999984 23788999999972 35677777753 455678889999985
Q ss_pred -EEecCCChhHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHhc--------CCCHHHHHHHHHHHH
Q 036794 578 -FFFPKMKDADIIYTLQW-----------IASKEGI--EIDKDALKLIASRS--------DGSLRDAEMTLEQLS 630 (1152)
Q Consensus 578 -I~F~~p~~~EI~eiL~~-----------iakkeGl--~Id~dALelLAe~s--------~GDLR~Ain~LEkLs 630 (1152)
+.+.+++.+++..+|.. .+..+|+ .++++|++.||+.+ +-..|.+..+++++.
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L 403 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLL 403 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 88999999999888732 2334566 47999999999883 336788888888864
No 201
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.18 E-value=3.3e-10 Score=126.72 Aligned_cols=139 Identities=17% Similarity=0.252 Sum_probs=116.9
Q ss_pred CCEEEEEEcCCCC--cchHHHHccceEEEecCCChhHHHHHHHHHHHHc------CCCCCHHHHHHHHHhcCCCHHHHHH
Q 036794 553 RRVVFILVSSSLD--ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKE------GIEIDKDALKLIASRSDGSLRDAEM 624 (1152)
Q Consensus 553 ~~VifILaTN~~d--kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakke------Gl~Id~dALelLAe~s~GDLR~Ain 624 (1152)
..++||.+|++.. .+.++|+|||++|.|.+++.+++...|++.+..+ .+.+++++++.|+..++||.|.++|
T Consensus 7 G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN 86 (300)
T PRK14700 7 GKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILN 86 (300)
T ss_pred CcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHH
Confidence 6788999987543 6889999999999999999999999999988752 3679999999999999999999999
Q ss_pred HHHHHHHh--C-C--CCCHHHHHHHHhcc----------chhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHH
Q 036794 625 TLEQLSLL--G-Q--RISVPLVQELVGLI----------SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689 (1152)
Q Consensus 625 ~LEkLsLl--g-~--~IT~EdV~elVg~v----------~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~L 689 (1152)
.||.++.. . + .||.+.|++++... .-+.+..+++.+-..|++.|+.+|-+|+..|+||..|...|
T Consensus 87 ~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRL 166 (300)
T PRK14700 87 LLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRM 166 (300)
T ss_pred HHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99996642 1 1 29999999988532 23456667777778899999999999999999999988766
Q ss_pred HH
Q 036794 690 AT 691 (1152)
Q Consensus 690 a~ 691 (1152)
..
T Consensus 167 ii 168 (300)
T PRK14700 167 LC 168 (300)
T ss_pred HH
Confidence 54
No 202
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.17 E-value=7.4e-10 Score=122.21 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=102.9
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCC------------CCcchHHHHccceEEEecCCChhHHHHHH
Q 036794 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSS------------LDALPHIIISRCQKFFFPKMKDADIIYTL 592 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~------------~dkL~~aL~SR~qvI~F~~p~~~EI~eiL 592 (1152)
++|+||||+|+|.-+.|..|.+.||+.-.. ++|++||. |+-+|-.|+.|..+|...|++.+++.++|
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~~P-iiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL 367 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALENDMAP-IIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKIL 367 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhhccCc-EEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHH
Confidence 579999999999999999999999984333 55666652 55689999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHh-cCCCHHHHHHHHHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 593 QWIASKEGIEIDKDALKLIASR-SDGSLRDAEMTLEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 593 ~~iakkeGl~Id~dALelLAe~-s~GDLR~Ain~LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
+.+|+++.+.++++|+++|... ...++|.+++++....+. +..+..+||..+...
T Consensus 368 ~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~L 428 (454)
T KOG2680|consen 368 RIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRL 428 (454)
T ss_pred HhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHH
Confidence 9999999999999999999988 456899999999876554 345777888776544
No 203
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.14 E-value=1.9e-09 Score=126.70 Aligned_cols=203 Identities=16% Similarity=0.173 Sum_probs=130.8
Q ss_pred CcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeC
Q 036794 421 RDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVG 499 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEId 499 (1152)
..++|....+..+...+.. ......++|+|++||||+++|++++........ |+ ....|..+.
T Consensus 139 ~~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~----~~-i~~~c~~~~----------- 202 (441)
T PRK10365 139 FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEK----PL-VTLNCAALN----------- 202 (441)
T ss_pred cceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCC----Ce-eeeeCCCCC-----------
Confidence 3578877766666554433 344567899999999999999999876543221 11 111122111
Q ss_pred CCCCCCHHHHHHHHHH-H-----------hhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-----------CCEE
Q 036794 500 PVGNFDFESILDLLDN-M-----------VTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-----------RRVV 556 (1152)
Q Consensus 500 aas~~~vdeIreLle~-a-----------~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-----------~~Vi 556 (1152)
...+...+.. . ......+.+++|||||++.|+...|..|+++|++.. .+++
T Consensus 203 ------~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~r 276 (441)
T PRK10365 203 ------ESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVR 276 (441)
T ss_pred ------HHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceE
Confidence 0111110000 0 000122457899999999999999999999998732 3677
Q ss_pred EEEEcCCC-------CcchHHHHccceEEE--ecCCCh--hHHHHHHHHHHH----HcC---CCCCHHHHHHHHHh-cCC
Q 036794 557 FILVSSSL-------DALPHIIISRCQKFF--FPKMKD--ADIIYTLQWIAS----KEG---IEIDKDALKLIASR-SDG 617 (1152)
Q Consensus 557 fILaTN~~-------dkL~~aL~SR~qvI~--F~~p~~--~EI~eiL~~iak----keG---l~Id~dALelLAe~-s~G 617 (1152)
+|++|+.. ..+.+.|..++..+. ++++.. +++..++..++. ..+ ..+++++++.|..+ |+|
T Consensus 277 ii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 356 (441)
T PRK10365 277 LIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 (441)
T ss_pred EEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCC
Confidence 88888653 236667778877544 444432 244444444433 233 35899999999999 899
Q ss_pred CHHHHHHHHHHHHHh--CCCCCHHHHHHHH
Q 036794 618 SLRDAEMTLEQLSLL--GQRISVPLVQELV 645 (1152)
Q Consensus 618 DLR~Ain~LEkLsLl--g~~IT~EdV~elV 645 (1152)
|+|++.|.|++++.. +..|+.+++...+
T Consensus 357 N~reL~~~~~~~~~~~~~~~i~~~~l~~~~ 386 (441)
T PRK10365 357 NIRELENAVERAVVLLTGEYISERELPLAI 386 (441)
T ss_pred HHHHHHHHHHHHHHhCCCCccchHhCchhh
Confidence 999999999998765 4468888876544
No 204
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.1e-09 Score=131.17 Aligned_cols=177 Identities=19% Similarity=0.273 Sum_probs=128.0
Q ss_pred CCcCcccCcHHHHHHHHHHHHhC------------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMRR------------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~g------------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
-.++|+-|-.++++.|.+.|.-. +...++|||||||||||.+|-++|...+-.+....
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvK---------- 733 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVK---------- 733 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEec----------
Confidence 35899999999999998887642 33358999999999999999999987654321110
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhh--CC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKVVDR--AP 552 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLklLEe--pp 552 (1152)
|-..--.++ .-.-+.+|++++.+.. +++.|+|+||+|.+.+ ...|.||.-|+. .-
T Consensus 734 ----GPElL~KyI----GaSEq~vR~lF~rA~~----a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl 801 (952)
T KOG0735|consen 734 ----GPELLSKYI----GASEQNVRDLFERAQS----AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGL 801 (952)
T ss_pred ----CHHHHHHHh----cccHHHHHHHHHHhhc----cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccccc
Confidence 000000011 1234668999988743 5669999999999843 367889888876 33
Q ss_pred CCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Q 036794 553 RRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG 617 (1152)
Q Consensus 553 ~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G 617 (1152)
..|+++.+|..|+.++++|++.+. .+.++.|++.+..++++.+....-+. ++-.++.+|..++|
T Consensus 802 ~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g 868 (952)
T KOG0735|consen 802 DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDG 868 (952)
T ss_pred ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhcCC
Confidence 578888889999999999998655 38889999999999998877654321 33347888888766
No 205
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.14 E-value=4.5e-10 Score=130.88 Aligned_cols=108 Identities=20% Similarity=0.271 Sum_probs=83.4
Q ss_pred CCceEEEEeCCCCCCH------------HHHHHHHHHHhh----------CCCCEEEEEEcC----CCCcchHHHHccce
Q 036794 523 SQYRIFVFDDCDTLSP------------DSWSAISKVVDR----------APRRVVFILVSS----SLDALPHIIISRCQ 576 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~------------eaqnaLLklLEe----------pp~~VifILaTN----~~dkL~~aL~SR~q 576 (1152)
...+||||||+|++.. .+|..||+++|. ...++.||++.. .+..|.|.|.-|+.
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~P 325 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFP 325 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccc
Confidence 4678999999999842 368999999997 235777887763 45568888999998
Q ss_pred E-EEecCCChhHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHhc--------CCCHHHHHHHHHHHH
Q 036794 577 K-FFFPKMKDADIIYTLQ-----------WIASKEGI--EIDKDALKLIASRS--------DGSLRDAEMTLEQLS 630 (1152)
Q Consensus 577 v-I~F~~p~~~EI~eiL~-----------~iakkeGl--~Id~dALelLAe~s--------~GDLR~Ain~LEkLs 630 (1152)
+ +.+.+++.+++..+|. ..+..+|+ .++++|+..||..+ +-..|.+..+++++.
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l 401 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL 401 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 5 8999999999988772 22344565 47999999999884 346888888888863
No 206
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=8.6e-10 Score=138.45 Aligned_cols=188 Identities=23% Similarity=0.200 Sum_probs=137.3
Q ss_pred CCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
..|+++-|-+.++..|++.+.. -..+..+||+||||||||+.|+++|.++...... .
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~k-----------i 330 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRK-----------I 330 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccc-----------c
Confidence 4799999999999999987754 1334579999999999999999999876433211 1
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH-----------HHHHHHHHHhhC--C
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD-----------SWSAISKVVDRA--P 552 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e-----------aqnaLLklLEep--p 552 (1152)
.+++....+..... ..-.-.+++.+++.+... .+.|||+||||.|.+. ....||.+|+.. .
T Consensus 331 sffmrkgaD~lskw--vgEaERqlrllFeeA~k~----qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsR 404 (1080)
T KOG0732|consen 331 SFFMRKGADCLSKW--VGEAERQLRLLFEEAQKT----QPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSR 404 (1080)
T ss_pred chhhhcCchhhccc--cCcHHHHHHHHHHHHhcc----CceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCC
Confidence 12222211111110 011235688888887543 4579999999987532 345788888873 3
Q ss_pred CCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Q 036794 553 RRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA 622 (1152)
Q Consensus 553 ~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~A 622 (1152)
..|++|.+||.++.+.++|+++.. .+.|+.++.+....+|...-.+..-.+....+..|++.+.|....-
T Consensus 405 gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaD 477 (1080)
T KOG0732|consen 405 GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGAD 477 (1080)
T ss_pred CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHH
Confidence 689999999999999999988765 4889999999999998877777677789999999999976644443
No 207
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.13 E-value=3e-09 Score=126.16 Aligned_cols=205 Identities=16% Similarity=0.151 Sum_probs=120.9
Q ss_pred CcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCC
Q 036794 421 RDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGP 500 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIda 500 (1152)
..|+|++++++.+..++..+. .+||+||||||||++|++|++.+.... .+ .+ ..|... ...++
T Consensus 20 ~~i~gre~vI~lll~aalag~---hVLL~GpPGTGKT~LAraLa~~~~~~~-~F----~~-~~~~ft---tp~DL----- 82 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE---SVFLLGPPGIAKSLIARRLKFAFQNAR-AF----EY-LMTRFS---TPEEV----- 82 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC---CEEEECCCChhHHHHHHHHHHHhcccC-cc----ee-eeeeec---CcHHh-----
Confidence 458999999999988886653 489999999999999999999875321 11 00 000000 00011
Q ss_pred CCCCCHHHHHHHH-----HHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC---------CCCEEE-EEEcCCCC
Q 036794 501 VGNFDFESILDLL-----DNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA---------PRRVVF-ILVSSSLD 565 (1152)
Q Consensus 501 as~~~vdeIreLl-----e~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep---------p~~Vif-ILaTN~~d 565 (1152)
++...+..+. ......+. ....++|+|||+.+++..+++|+.+|++. +.+..| +++||.+.
T Consensus 83 ---fG~l~i~~~~~~g~f~r~~~G~L-~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LP 158 (498)
T PRK13531 83 ---FGPLSIQALKDEGRYQRLTSGYL-PEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELP 158 (498)
T ss_pred ---cCcHHHhhhhhcCchhhhcCCcc-ccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCc
Confidence 1111111111 11111111 12249999999999999999999999761 123344 44455332
Q ss_pred ---cchHHHHccceE-EEecCCCh-hHHHHHHHHHHH-----------------------HcCCCCCHHHHHHHHHhc--
Q 036794 566 ---ALPHIIISRCQK-FFFPKMKD-ADIIYTLQWIAS-----------------------KEGIEIDKDALKLIASRS-- 615 (1152)
Q Consensus 566 ---kL~~aL~SR~qv-I~F~~p~~-~EI~eiL~~iak-----------------------keGl~Id~dALelLAe~s-- 615 (1152)
.+.+++..|+.. +.+++++. ++..++|..... -..+.+++..+++|....
T Consensus 159 E~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~ 238 (498)
T PRK13531 159 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQ 238 (498)
T ss_pred ccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHH
Confidence 244589999963 77777863 444555543110 135567778777776652
Q ss_pred ----C----CCHHHHHHH---HHHHHHhCCC--CCHHHHHHHHhc
Q 036794 616 ----D----GSLRDAEMT---LEQLSLLGQR--ISVPLVQELVGL 647 (1152)
Q Consensus 616 ----~----GDLR~Ain~---LEkLsLlg~~--IT~EdV~elVg~ 647 (1152)
. -+.|..+.. ++..+++.++ ++.+||. ++..
T Consensus 239 lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~ 282 (498)
T PRK13531 239 LDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKD 282 (498)
T ss_pred HhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHH
Confidence 1 234554443 4444566543 8888888 5543
No 208
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=99.09 E-value=3e-10 Score=142.53 Aligned_cols=211 Identities=21% Similarity=0.247 Sum_probs=148.5
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhC------------CCC--c-EEEEEcCCCchHHHHHHHHHHHHcccCC
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRR------------KVG--L-LYVFYGPHGTGKTSCARIFARALNCQSL 472 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~g------------ri~--~-~yLL~GPpGTGKTtlARaLAkeL~~~~~ 472 (1152)
.+.|.++|+|....++.|+......+.+|+... ... . ++|++||||+|||+.|++++++++....
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~ 386 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVV 386 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccccee
Confidence 578999999999999999887777888887664 111 1 3699999999999999999999987655
Q ss_pred CCCCCCCCCCccccccCCCccceE-EeCCCCCCCHHHHHHHHHHH-hhCCCCCCceEEEEeCCCCCCH---HHHHHHHHH
Q 036794 473 EQPKPCGFCNSCISHDRGKSRNIK-EVGPVGNFDFESILDLLDNM-VTSRPPSQYRIFVFDDCDTLSP---DSWSAISKV 547 (1152)
Q Consensus 473 e~~epcg~c~~c~~i~~g~~~dvi-EIdaas~~~vdeIreLle~a-~~~P~~a~~kVVIIDEID~Ls~---eaqnaLLkl 547 (1152)
+.+..... +.....- +.+..+. ..+...+... .........-||++||+|-+.. ..+..|-.+
T Consensus 387 E~Nas~~R---------Sk~~l~~~~~~~~~s---~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l 454 (871)
T KOG1968|consen 387 EKNASDVR---------SKKELLNKLGNATSS---HSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSL 454 (871)
T ss_pred ecCccccc---------cccHHHhhhhccccc---cchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHH
Confidence 44311000 0000000 0000000 0111111000 0001113345999999999987 456777777
Q ss_pred HhhCCCCEEEEEEcCCCCc-chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 036794 548 VDRAPRRVVFILVSSSLDA-LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626 (1152)
Q Consensus 548 LEepp~~VifILaTN~~dk-L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~L 626 (1152)
+.. ...-+|++||+.+. -..++.+-|-.++|..|+...+..+|..+|..+++.|+++.++.+...++||+|..++.|
T Consensus 455 ~~k--s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~l 532 (871)
T KOG1968|consen 455 CKK--SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQL 532 (871)
T ss_pred HHh--ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHH
Confidence 774 55668888887763 233566678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 036794 627 EQLSLL 632 (1152)
Q Consensus 627 EkLsLl 632 (1152)
+.+.+.
T Consensus 533 q~~~~~ 538 (871)
T KOG1968|consen 533 QFWSLS 538 (871)
T ss_pred hhhhcc
Confidence 988544
No 209
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=99.08 E-value=1.9e-09 Score=110.85 Aligned_cols=164 Identities=21% Similarity=0.292 Sum_probs=118.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~ 525 (1152)
|||||+.=.-+...++.|.+.+..... ...++..++.. .....++++.+...|+++..
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~~------------------~~~~~~~~~~~----~~~~~~l~~~~~s~slF~~~ 58 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKDF------------------DDFNVIVFDGS----EDDIDELLEELQSPSLFGDK 58 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTTE------------------EEEEEEE-STT----S-HHH-HTTTSTTTTSSSSE
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCCC------------------ccceEEEEccc----cCcHHHHHHHHhcCCccCCC
Confidence 899999888888888888777442210 01123333321 12233477788888999999
Q ss_pred eEEEEeCC----CCCCHHHHHHHHHHHhhCCCCEEEEEEcC-CCC---cchHHHHccceEEEecCCChhHHHHHHHHHHH
Q 036794 526 RIFVFDDC----DTLSPDSWSAISKVVDRAPRRVVFILVSS-SLD---ALPHIIISRCQKFFFPKMKDADIIYTLQWIAS 597 (1152)
Q Consensus 526 kVVIIDEI----D~Ls~eaqnaLLklLEepp~~VifILaTN-~~d---kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iak 597 (1152)
++|+|.++ +.........|..+++.++.++++|+.++ ..+ ++...+...+.++.|.++...++..|++..++
T Consensus 59 klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 138 (172)
T PF06144_consen 59 KLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAK 138 (172)
T ss_dssp EEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHH
T ss_pred eEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHH
Confidence 99999998 55677788999999999999999999888 554 46677778888999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036794 598 KEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL 631 (1152)
Q Consensus 598 keGl~Id~dALelLAe~s~GDLR~Ain~LEkLsL 631 (1152)
+.|+.++++|+++|+.+.++|++.+.++|+++++
T Consensus 139 ~~g~~i~~~a~~~L~~~~~~d~~~l~~EleKL~L 172 (172)
T PF06144_consen 139 KNGLKIDPDAAQYLIERVGNDLSLLQNELEKLSL 172 (172)
T ss_dssp HTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHhChHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999875
No 210
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.07 E-value=2.1e-09 Score=103.79 Aligned_cols=136 Identities=22% Similarity=0.270 Sum_probs=88.4
Q ss_pred cCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCC
Q 036794 424 VGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGN 503 (1152)
Q Consensus 424 VGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~ 503 (1152)
+|++.++..+...+... ....++|+||+|+|||++++.+++.+..... .++.++....
T Consensus 1 ~~~~~~~~~i~~~~~~~-~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~---------------------~v~~~~~~~~ 58 (151)
T cd00009 1 VGQEEAIEALREALELP-PPKNLLLYGPPGTGKTTLARAIANELFRPGA---------------------PFLYLNASDL 58 (151)
T ss_pred CchHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHhhcCCC---------------------CeEEEehhhh
Confidence 36777888888887653 3346899999999999999999998852110 0222221111
Q ss_pred CCHHHHHHHH-----HHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC------CCCEEEEEEcCCCC--cchHH
Q 036794 504 FDFESILDLL-----DNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA------PRRVVFILVSSSLD--ALPHI 570 (1152)
Q Consensus 504 ~~vdeIreLl-----e~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep------p~~VifILaTN~~d--kL~~a 570 (1152)
.......... .............+|||||++.+.......++..++.. ...+.+|++++... .+.+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~ 138 (151)
T cd00009 59 LEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRA 138 (151)
T ss_pred hhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChh
Confidence 1101111000 11111122345689999999999777778888888874 46888999988766 67888
Q ss_pred HHccc-eEEEec
Q 036794 571 IISRC-QKFFFP 581 (1152)
Q Consensus 571 L~SR~-qvI~F~ 581 (1152)
+.+|+ ..+.|+
T Consensus 139 ~~~r~~~~i~~~ 150 (151)
T cd00009 139 LYDRLDIRIVIP 150 (151)
T ss_pred HHhhhccEeecC
Confidence 99998 566654
No 211
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4.3e-10 Score=124.91 Aligned_cols=178 Identities=20% Similarity=0.217 Sum_probs=116.9
Q ss_pred CCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
-+|+++-|--..+..|.+.+.- =+.|..+|||||||||||.+|+++|..+++.+....
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~---------- 198 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVV---------- 198 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEee----------
Confidence 4899999988888888776532 245668999999999999999999999987642110
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhh----
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PDSWSAISKVVDR---- 550 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~eaqnaLLklLEe---- 550 (1152)
++.. ++....-...-|++.+..+.. -...++|+||+|... ...+..|..++++
T Consensus 199 ---ss~l-----v~kyiGEsaRlIRemf~yA~~----~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgf 266 (388)
T KOG0651|consen 199 ---SSAL-----VDKYIGESARLIRDMFRYARE----VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGF 266 (388)
T ss_pred ---Hhhh-----hhhhcccHHHHHHHHHHHHhh----hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccc
Confidence 0100 011111122345555555433 234899999999862 2345677777665
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcC--CCCCHHHHHHHHHhcCC
Q 036794 551 -APRRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEG--IEIDKDALKLIASRSDG 617 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeG--l~Id~dALelLAe~s~G 617 (1152)
.-..|-+|++||+++-|+++|++-.. .+..+.|.......+++-..+... -.|+.+++-.+.+-++|
T Consensus 267 d~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~g 339 (388)
T KOG0651|consen 267 DTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNG 339 (388)
T ss_pred hhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccCh
Confidence 33689999999999999999988554 355565655554444443332211 14777777777777655
No 212
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.04 E-value=9.1e-09 Score=111.42 Aligned_cols=190 Identities=21% Similarity=0.281 Sum_probs=139.4
Q ss_pred hhCCCCcCcccCcHHHHHHHHH---HHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCC
Q 036794 414 KYMPRTFRDLVGQNLVAQALSN---AVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490 (1152)
Q Consensus 414 KyRP~sFddLVGQe~v~q~Lk~---aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g 490 (1152)
.+.|-.+.+|+|-+...+.|.. ....|..++.+||+|.+||||+++++++..++....
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~g------------------- 113 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEG------------------- 113 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcC-------------------
Confidence 4556678899998887777763 445688888999999999999999999999887542
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH-HHHHHHHHHhh----CCCCEEEEEEcCCCC
Q 036794 491 KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD-SWSAISKVVDR----APRRVVFILVSSSLD 565 (1152)
Q Consensus 491 ~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e-aqnaLLklLEe----pp~~VifILaTN~~d 565 (1152)
..++|++.. ++..+..+++.++..| .+-|||+|+.-.=..+ ...+|..+||. .|.+|+|..++|.-+
T Consensus 114 --lrLVEV~k~---dl~~Lp~l~~~Lr~~~---~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 114 --LRLVEVDKE---DLATLPDLVELLRARP---EKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred --CeEEEEcHH---HHhhHHHHHHHHhcCC---ceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 237887653 4455666677766554 3468899987554433 45566666654 788999999988766
Q ss_pred cchHH----------------------HHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHH-----HHHhcCC
Q 036794 566 ALPHI----------------------IISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKL-----IASRSDG 617 (1152)
Q Consensus 566 kL~~a----------------------L~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALel-----LAe~s~G 617 (1152)
.+++. |-.|+. .+.|++.+.++...++...+++.+++++++.++. -..+.+.
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 44432 334544 5889999999999999999999999998755544 3334556
Q ss_pred CHHHHHHHHHHHH
Q 036794 618 SLRDAEMTLEQLS 630 (1152)
Q Consensus 618 DLR~Ain~LEkLs 630 (1152)
+-|-|.+.++.++
T Consensus 266 SGR~A~QF~~~~~ 278 (287)
T COG2607 266 SGRVAWQFIRDLA 278 (287)
T ss_pred ccHhHHHHHHHHH
Confidence 8888888877764
No 213
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1e-08 Score=123.26 Aligned_cols=214 Identities=18% Similarity=0.172 Sum_probs=147.4
Q ss_pred CcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 421 RDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
.++.|....+..+...+.. -+.+.++|+|||||||||.+++++|++.++.....+ +-.+
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~--------~pel- 254 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLIN--------GPEL- 254 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecc--------cHHH-
Confidence 5677777666666655533 245568999999999999999999999875421111 0000
Q ss_pred CCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH----------HHHHHHHHHHhhCC--CCEE
Q 036794 489 RGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP----------DSWSAISKVVDRAP--RRVV 556 (1152)
Q Consensus 489 ~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~----------eaqnaLLklLEepp--~~Vi 556 (1152)
+ .....-.-..++..++.+.... .+.++||||+|.+.+ .....|+.+++... ..++
T Consensus 255 -------i--~k~~gEte~~LR~~f~~a~k~~---~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vi 322 (693)
T KOG0730|consen 255 -------I--SKFPGETESNLRKAFAEALKFQ---VPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVI 322 (693)
T ss_pred -------H--HhcccchHHHHHHHHHHHhccC---CCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEE
Confidence 0 0001122355788888775442 257999999999864 24558888888755 7999
Q ss_pred EEEEcCCCCcchHHHHc-cceE-EEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCH-HHHHHHHHHHHHhC
Q 036794 557 FILVSSSLDALPHIIIS-RCQK-FFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSL-RDAEMTLEQLSLLG 633 (1152)
Q Consensus 557 fILaTN~~dkL~~aL~S-R~qv-I~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDL-R~Ain~LEkLsLlg 633 (1152)
+|.+||.++.|.+++++ |+.. +.+.-|+..+..++|+.+++..+.. ++..+..++..+.|-+ .++..++..+++-.
T Consensus 323 vl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~ 401 (693)
T KOG0730|consen 323 VLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQA 401 (693)
T ss_pred EEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 99999999999999997 7764 8888999999999999999988776 6778888998887754 35555555544332
Q ss_pred CCCCHHHHHHHHhccchhhHHHH
Q 036794 634 QRISVPLVQELVGLISDEKLVDL 656 (1152)
Q Consensus 634 ~~IT~EdV~elVg~v~ee~ifdL 656 (1152)
.+=+.++++.+...+....+-+.
T Consensus 402 ~r~~~~~~~~A~~~i~psa~Re~ 424 (693)
T KOG0730|consen 402 TRRTLEIFQEALMGIRPSALREI 424 (693)
T ss_pred hhhhHHHHHHHHhcCCchhhhhe
Confidence 22255566666655444443333
No 214
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.98 E-value=3.7e-08 Score=119.00 Aligned_cols=194 Identities=18% Similarity=0.255 Sum_probs=132.6
Q ss_pred ccCcHHHHHHHHHHHH----hCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEe
Q 036794 423 LVGQNLVAQALSNAVM----RRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV 498 (1152)
Q Consensus 423 LVGQe~v~q~Lk~aL~----~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEI 498 (1152)
|-+.+.....+...+. ....+.++.++|-||||||.+++.+-+.|.........| ...++++
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p--------------~f~yveI 463 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELP--------------KFDYVEI 463 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCC--------------CccEEEE
Confidence 4555655555554443 323344788999999999999999998876433222111 1124444
Q ss_pred CCCCCC------------------CHHHHHHHHHHHhhCCCC-CCceEEEEeCCCCCCHHHHHHHHHHHhhC---CCCEE
Q 036794 499 GPVGNF------------------DFESILDLLDNMVTSRPP-SQYRIFVFDDCDTLSPDSWSAISKVVDRA---PRRVV 556 (1152)
Q Consensus 499 daas~~------------------~vdeIreLle~a~~~P~~-a~~kVVIIDEID~Ls~eaqnaLLklLEep---p~~Vi 556 (1152)
++..-. .+..-.++++.-...|.. ....||+|||.|.|-..-|..|..+++.| ...++
T Consensus 464 Ngm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLv 543 (767)
T KOG1514|consen 464 NGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLV 543 (767)
T ss_pred cceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceE
Confidence 433222 223323333332222222 34568999999999988899999999874 46888
Q ss_pred EEEEcCCCCcchHH-----HHccc--eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHh---cCCCHHHHHHHH
Q 036794 557 FILVSSSLDALPHI-----IISRC--QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASR---SDGSLRDAEMTL 626 (1152)
Q Consensus 557 fILaTN~~dkL~~a-----L~SR~--qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~---s~GDLR~Ain~L 626 (1152)
+|.++|..+ ||+. +-+|+ .++.|.+++-.++.+++...++.. -.++.+|+++++.. ..||.|.++.++
T Consensus 544 vi~IaNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 544 VIAIANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred EEEeccccc-CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 899988877 5554 34454 479999999999999998777654 35789999999887 679999999999
Q ss_pred HHHHHh
Q 036794 627 EQLSLL 632 (1152)
Q Consensus 627 EkLsLl 632 (1152)
++++-.
T Consensus 622 ~RA~Ei 627 (767)
T KOG1514|consen 622 RRAAEI 627 (767)
T ss_pred HHHHHH
Confidence 998755
No 215
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=2.1e-08 Score=116.81 Aligned_cols=211 Identities=20% Similarity=0.244 Sum_probs=143.5
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHh---CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMR---RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~---gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
..+.-.+.| ..++|.+.-+..+++++.. .+.+..+.++|.||||||.+..-+-..+.+.... +|....+|.
T Consensus 141 ~~l~~t~~p---~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~---~~~v~inc~ 214 (529)
T KOG2227|consen 141 ESLLNTAPP---GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS---PVTVYINCT 214 (529)
T ss_pred HHHHhcCCC---CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc---ceeEEEeec
Confidence 344555666 5679999888888888765 3444567799999999999998877776655332 344445566
Q ss_pred cccCCCc------cce-EEeCCCCCCCHHHHHHHHHH-HhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh---CCCC
Q 036794 486 SHDRGKS------RNI-KEVGPVGNFDFESILDLLDN-MVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR---APRR 554 (1152)
Q Consensus 486 ~i~~g~~------~dv-iEIdaas~~~vdeIreLle~-a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe---pp~~ 554 (1152)
.+..... ..+ .+... ...+ .+....++. .... ...-|+++||+|.|....+..|+.+++- |..+
T Consensus 215 sl~~~~aiF~kI~~~~~q~~~s-~~~~-~~~~~~~~~h~~q~---k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr 289 (529)
T KOG2227|consen 215 SLTEASAIFKKIFSSLLQDLVS-PGTG-MQHLEKFEKHTKQS---KFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSR 289 (529)
T ss_pred cccchHHHHHHHHHHHHHHhcC-Cchh-HHHHHHHHHHHhcc---cceEEEEechhhHHhhcccceeeeehhcccCCcce
Confidence 5432221 111 01111 1122 222223332 2222 1235889999999988877778777776 5678
Q ss_pred EEEEEEcCCCC---cchHHHHccce----EEEecCCChhHHHHHHHHHHHHcCCCC-CHHHHHHHHHh---cCCCHHHHH
Q 036794 555 VVFILVSSSLD---ALPHIIISRCQ----KFFFPKMKDADIIYTLQWIASKEGIEI-DKDALKLIASR---SDGSLRDAE 623 (1152)
Q Consensus 555 VifILaTN~~d---kL~~aL~SR~q----vI~F~~p~~~EI~eiL~~iakkeGl~I-d~dALelLAe~---s~GDLR~Ai 623 (1152)
.++|.++|..+ .+.+.|..++. .+.|+||+.++|.++|...+..+...+ -+.|++++|+. ..||+|.|+
T Consensus 290 ~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaL 369 (529)
T KOG2227|consen 290 IILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKAL 369 (529)
T ss_pred eeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHH
Confidence 89999999876 45666777554 699999999999999999988776554 44588888887 569999999
Q ss_pred HHHHHHH
Q 036794 624 MTLEQLS 630 (1152)
Q Consensus 624 n~LEkLs 630 (1152)
..+..+.
T Consensus 370 dv~R~ai 376 (529)
T KOG2227|consen 370 DVCRRAI 376 (529)
T ss_pred HHHHHHH
Confidence 9988654
No 216
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.96 E-value=1e-09 Score=117.50 Aligned_cols=133 Identities=20% Similarity=0.276 Sum_probs=76.0
Q ss_pred CcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC-C------C
Q 036794 419 TFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR-G------K 491 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~-g------~ 491 (1152)
.|.+|+||+.++..|.-+...+ |.+||+||||||||++|+.++..+...... +.+..... ..+.. . .
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~---h~lLl~GppGtGKTmlA~~l~~lLP~l~~~--e~le~~~i-~s~~~~~~~~~~~~ 74 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGG---HHLLLIGPPGTGKTMLARRLPSLLPPLTEE--EALEVSKI-YSVAGLGPDEGLIR 74 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC-----EEEES-CCCTHHHHHHHHHHCS--CCEE--CCESS--S--TT---S---EEEE
T ss_pred ChhhhcCcHHHHHHHHHHHcCC---CCeEEECCCCCCHHHHHHHHHHhCCCCchH--HHhhhccc-cccccCCCCCceec
Confidence 3899999999999999888753 679999999999999999998765432211 11110000 00000 0 0
Q ss_pred ccceEEeCCCCCCCHHHHHHHHHHHh-hCC---CCCCceEEEEeCCCCCCHHHHHHHHHHHhh-------------CCCC
Q 036794 492 SRNIKEVGPVGNFDFESILDLLDNMV-TSR---PPSQYRIFVFDDCDTLSPDSWSAISKVVDR-------------APRR 554 (1152)
Q Consensus 492 ~~dviEIdaas~~~vdeIreLle~a~-~~P---~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-------------pp~~ 554 (1152)
.+.+.... .... ...++.... ..| ..+.++|+||||+..+.....++|+..|++ .|.+
T Consensus 75 ~~Pfr~ph--hs~s---~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~ 149 (206)
T PF01078_consen 75 QRPFRAPH--HSAS---EAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPAR 149 (206)
T ss_dssp ---EEEE---TT-----HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--
T ss_pred CCCcccCC--CCcC---HHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecc
Confidence 11111111 1111 122222211 011 125689999999999999999999999997 4677
Q ss_pred EEEEEEcC
Q 036794 555 VVFILVSS 562 (1152)
Q Consensus 555 VifILaTN 562 (1152)
..||++.|
T Consensus 150 f~lv~a~N 157 (206)
T PF01078_consen 150 FLLVAAMN 157 (206)
T ss_dssp EEEEEEE-
T ss_pred cEEEEEec
Confidence 88888876
No 217
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.96 E-value=1.1e-08 Score=108.03 Aligned_cols=192 Identities=17% Similarity=0.274 Sum_probs=110.8
Q ss_pred ccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCC------------
Q 036794 423 LVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG------------ 490 (1152)
Q Consensus 423 LVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g------------ 490 (1152)
++|.+..++.|.+++..+.. ..++++||+|+|||++++.+.+.+..... ...++..+......
T Consensus 1 F~gR~~el~~l~~~l~~~~~-~~~~l~G~rg~GKTsLl~~~~~~~~~~~~----~~~y~~~~~~~~~~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPS-QHILLYGPRGSGKTSLLKEFINELKEKGY----KVVYIDFLEESNESSLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--S-SEEEEEESTTSSHHHHHHHHHHHCT--EE----CCCHHCCTTBSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcC-cEEEEEcCCcCCHHHHHHHHHHHhhhcCC----cEEEEecccchhhhHHHHHHHHHHHH
Confidence 57899999999999987643 46899999999999999999998743211 01111110000000
Q ss_pred -----------CccceEEeC-CCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC------HHHHHHHHHHHhh--
Q 036794 491 -----------KSRNIKEVG-PVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS------PDSWSAISKVVDR-- 550 (1152)
Q Consensus 491 -----------~~~dviEId-aas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls------~eaqnaLLklLEe-- 550 (1152)
.......+. .........+..+++.+... +..-||+|||++.+. ......|..+++.
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKK---GKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHC---HCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhc---CCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 000000010 00112234455566655433 333799999999988 3445677777776
Q ss_pred CCCCEEEEEEcCCCCcc------hHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHH
Q 036794 551 APRRVVFILVSSSLDAL------PHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEI--DKDALKLIASRSDGSLRDA 622 (1152)
Q Consensus 551 pp~~VifILaTN~~dkL------~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~I--d~dALelLAe~s~GDLR~A 622 (1152)
...++.+|+++...... ..++..|+..+.+++++.++..+++...+... ..+ +++.++.+...++|+++.+
T Consensus 153 ~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l 231 (234)
T PF01637_consen 153 SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYL 231 (234)
T ss_dssp --TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHH
T ss_pred ccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHH
Confidence 34567777776653211 12366778889999999999999999988776 655 9999999999999999876
Q ss_pred H
Q 036794 623 E 623 (1152)
Q Consensus 623 i 623 (1152)
.
T Consensus 232 ~ 232 (234)
T PF01637_consen 232 Q 232 (234)
T ss_dssp H
T ss_pred h
Confidence 4
No 218
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.96 E-value=3.8e-08 Score=116.09 Aligned_cols=238 Identities=13% Similarity=0.184 Sum_probs=137.0
Q ss_pred cCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeC
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVG 499 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEId 499 (1152)
++++++.+..++.+..++..++ .++|+||||||||++|+.+|..+........ + ..+.....-...+++.-.
T Consensus 174 l~d~~i~e~~le~l~~~L~~~~---~iil~GppGtGKT~lA~~la~~l~~~~~~~~--v---~~VtFHpsySYeDFI~G~ 245 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIKK---NIILQGPPGVGKTFVARRLAYLLTGEKAPQR--V---NMVQFHQSYSYEDFIQGY 245 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcCC---CEEEECCCCCCHHHHHHHHHHHhcCCcccce--e---eEEeecccccHHHHhccc
Confidence 6788888888888888887543 5899999999999999999998865321110 0 000000000111111100
Q ss_pred CCCCCCH----HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH-HHHHHHHHHhh----------------------CC
Q 036794 500 PVGNFDF----ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD-SWSAISKVVDR----------------------AP 552 (1152)
Q Consensus 500 aas~~~v----deIreLle~a~~~P~~a~~kVVIIDEID~Ls~e-aqnaLLklLEe----------------------pp 552 (1152)
.....+. .-+.+++..+...| ..+.+|||||++....+ .+..|+.+||. .|
T Consensus 246 rP~~vgy~~~~G~f~~~~~~A~~~p--~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP 323 (459)
T PRK11331 246 RPNGVGFRRKDGIFYNFCQQAKEQP--EKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVP 323 (459)
T ss_pred CCCCCCeEecCchHHHHHHHHHhcc--cCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCC
Confidence 0111111 12344555554433 34589999999999855 57777777762 45
Q ss_pred CCEEEEEEcCCCC----cchHHHHccceEEEecC-CChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 036794 553 RRVVFILVSSSLD----ALPHIIISRCQKFFFPK-MKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLE 627 (1152)
Q Consensus 553 ~~VifILaTN~~d----kL~~aL~SR~qvI~F~~-p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LE 627 (1152)
.++.||.+.|..+ .++.+|++|+..+.+.+ ++...+.+++. ..+ +++..++.+++. +..+.+.|.
T Consensus 324 ~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l~----~~~--~~~~~~~~l~~~----l~~LN~~I~ 393 (459)
T PRK11331 324 ENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLL----NKK--AEPSFVESLCQK----MNELNQEIS 393 (459)
T ss_pred CCeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHHH----hcc--cCchhHHHHHHH----HHHHHHHHH
Confidence 7888999998776 58889999999988876 34444444442 122 344444444332 233333333
Q ss_pred HH-HHhCC--C-----CC------HHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036794 628 QL-SLLGQ--R-----IS------VPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIME 677 (1152)
Q Consensus 628 kL-sLlg~--~-----IT------~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~ 677 (1152)
+- .+++. . .. .....+.+..+-...+.-|++.-+-.|..++-.+.+.|+.
T Consensus 394 ~~~~~lg~~~~IGhsyf~~~~~~~~~~~~~~l~~i~~~~I~PlL~EY~~dd~~k~~~~~~~~~~ 457 (459)
T PRK11331 394 KEATILGKGFRIGHSYFCCGLEDGTSPDTQWLKEIVMTDIAPLLEEYFFDDPYKQQIWADKLLG 457 (459)
T ss_pred hhhhccCCCeEEeeeeeccccccccchhHHHHHHHHHhhhhhhHHHHcCCCHHHHHHHHHHhcc
Confidence 21 11211 0 00 0011133344445667777777777888887777776653
No 219
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.9e-09 Score=126.04 Aligned_cols=245 Identities=16% Similarity=0.214 Sum_probs=153.9
Q ss_pred cccccchhcccCCCC--CCCCCchhhhccccCCCCCC-CCCCCCccccCCCCCCCCCCCCCCccccccCC---cccccCc
Q 036794 290 HHRGKTFLDMAGRSL--TSCGLSDSRIRKAGGASHSR-NVPDMPLVSDRSSSSTNSGAEALPLLVEASGS---QSTEHAG 363 (1152)
Q Consensus 290 ~~~g~~~~d~~g~~~--~~~~~~d~~~rk~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~lPLl~~a~~s---~~~~n~~ 363 (1152)
.++|.-+|+..-++. --++.+ ++.++..-+ ++..+-...+.+..+.++..+.|.|...+... .+.-|++
T Consensus 141 ~f~~~~~l~l~v~~ie~~D~~~~-----~~~~a~~~~~~~~~G~l~~nT~i~F~k~~~s~lnL~~~~~~k~~~n~ii~Pd 215 (744)
T KOG0741|consen 141 EFNGNKLLGLKVKDIEAFDPGIS-----EGESAVTKRQKIERGLLLGNTQIVFEKAENSSLNLIGKSKTKPASNSIINPD 215 (744)
T ss_pred EecCceEeeeEEEEEeeeccccc-----cCCcccccccceeeeEeecCcEEEEEeccCcceEeeccccccchhccccCCC
Confidence 556766777666543 133333 354444444 36655555677778899999999988763332 2677899
Q ss_pred ccccCCCceeeehhhhhccccchhhhhcccccccccccccccccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCC
Q 036794 364 WVHDYSGELGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVG 443 (1152)
Q Consensus 364 ~~~d~sGeiGi~~d~Llk~~~~~dl~se~rs~~~~~l~~~~~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~ 443 (1152)
|....+| ||-...++.+- ..+++..+. -.+++++.| .-+.-
T Consensus 216 f~Fe~mG-IGGLd~EFs~I------------------------FRRAFAsRv---------Fpp~vie~l-----Gi~HV 256 (744)
T KOG0741|consen 216 FNFESMG-IGGLDKEFSDI------------------------FRRAFASRV---------FPPEVIEQL-----GIKHV 256 (744)
T ss_pred CChhhcc-cccchHHHHHH------------------------HHHHHHhhc---------CCHHHHHHc-----Cccce
Confidence 9999888 76544432211 011222222 223333322 01112
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHh----hC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV----TS 519 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~----~~ 519 (1152)
.++|||||||||||.+||.|.+-||...+... .|-. + ++.+-...-+.+|.++..+. ..
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIV-------------NGPe--I--L~KYVGeSE~NvR~LFaDAEeE~r~~ 319 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIV-------------NGPE--I--LNKYVGESEENVRKLFADAEEEQRRL 319 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCccc-------------CcHH--H--HHHhhcccHHHHHHHHHhHHHHHHhh
Confidence 36999999999999999999999997754321 1111 0 11111223456787776542 33
Q ss_pred CCCCCceEEEEeCCCCC-------------CHHHHHHHHHHHhh--CCCCEEEEEEcCCCCcchHHHHccce---EEEec
Q 036794 520 RPPSQYRIFVFDDCDTL-------------SPDSWSAISKVVDR--APRRVVFILVSSSLDALPHIIISRCQ---KFFFP 581 (1152)
Q Consensus 520 P~~a~~kVVIIDEID~L-------------s~eaqnaLLklLEe--pp~~VifILaTN~~dkL~~aL~SR~q---vI~F~ 581 (1152)
...+.-.|||+||+|.+ .....|.||.-++. .-.++.+|..||..+.++++|++.+. ..++.
T Consensus 320 g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIs 399 (744)
T KOG0741|consen 320 GANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEIS 399 (744)
T ss_pred CccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEe
Confidence 33456679999999976 33467888888775 33689999999999999999998654 36677
Q ss_pred CCChhHHHHHHHHH
Q 036794 582 KMKDADIIYTLQWI 595 (1152)
Q Consensus 582 ~p~~~EI~eiL~~i 595 (1152)
.|++.-..++++-+
T Consensus 400 LPDE~gRlQIl~IH 413 (744)
T KOG0741|consen 400 LPDEKGRLQILKIH 413 (744)
T ss_pred CCCccCceEEEEhh
Confidence 78887666655433
No 220
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.93 E-value=2.8e-09 Score=111.22 Aligned_cols=145 Identities=18% Similarity=0.217 Sum_probs=84.2
Q ss_pred ccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCC-ccceEEeCC
Q 036794 423 LVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK-SRNIKEVGP 500 (1152)
Q Consensus 423 LVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~-~~dviEIda 500 (1152)
|||.+..++.+.+.++. ...+..+||+|++||||+.+|++|++...... .||. ..+|..+.... ...++-...
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~----~pfi-~vnc~~~~~~~~e~~LFG~~~ 75 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKN----GPFI-SVNCAALPEELLESELFGHEK 75 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTT----S-EE-EEETTTS-HHHHHHHHHEBCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhccc----CCeE-EEehhhhhcchhhhhhhcccc
Confidence 58888888877776655 55566799999999999999999998543321 2221 12232221100 000111000
Q ss_pred CCCCCH-HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCCC----
Q 036794 501 VGNFDF-ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSSL---- 564 (1152)
Q Consensus 501 as~~~v-deIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~~---- 564 (1152)
....+. ..-..+++. +.+++||||||+.|+...|..|+++|++. +.+++||++|+..
T Consensus 76 ~~~~~~~~~~~G~l~~-------A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~ 148 (168)
T PF00158_consen 76 GAFTGARSDKKGLLEQ-------ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEEL 148 (168)
T ss_dssp SSSTTTSSEBEHHHHH-------TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHH
T ss_pred ccccccccccCCceee-------ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHH
Confidence 000000 000123333 46789999999999999999999999962 3589999999853
Q ss_pred ---CcchHHHHccceEEE
Q 036794 565 ---DALPHIIISRCQKFF 579 (1152)
Q Consensus 565 ---dkL~~aL~SR~qvI~ 579 (1152)
..+.+.|..|+..+.
T Consensus 149 v~~g~fr~dLy~rL~~~~ 166 (168)
T PF00158_consen 149 VEQGRFREDLYYRLNVFT 166 (168)
T ss_dssp HHTTSS-HHHHHHHTTEE
T ss_pred HHcCCChHHHHHHhceEe
Confidence 246677777776543
No 221
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.93 E-value=4.2e-08 Score=120.83 Aligned_cols=126 Identities=11% Similarity=0.152 Sum_probs=90.6
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhC---------------------CCCEEEEEEcCCC--CcchHHHHccce---
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRA---------------------PRRVVFILVSSSL--DALPHIIISRCQ--- 576 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEep---------------------p~~VifILaTN~~--dkL~~aL~SR~q--- 576 (1152)
++++++||||++.|+...|..|+++|++. |.++.+|+++|.. ..+.++|++|+.
T Consensus 216 AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~ 295 (608)
T TIGR00764 216 AHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYG 295 (608)
T ss_pred CCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCe
Confidence 45789999999999999999999999751 2367888888753 468889999987
Q ss_pred E-EEecC---CChhH---HHHHHHHHHHHcC--CCCCHHHHHHHHHh----------cCCCHHHHHHHHHHHHHh-----
Q 036794 577 K-FFFPK---MKDAD---IIYTLQWIASKEG--IEIDKDALKLIASR----------SDGSLRDAEMTLEQLSLL----- 632 (1152)
Q Consensus 577 v-I~F~~---p~~~E---I~eiL~~iakkeG--l~Id~dALelLAe~----------s~GDLR~Ain~LEkLsLl----- 632 (1152)
. +.|.. .+.+. +..++.+.+++.| ..++++|++.|.++ +..+.|++.+++..+...
T Consensus 296 v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~ 375 (608)
T TIGR00764 296 YEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSG 375 (608)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcC
Confidence 3 45543 22333 3455555566653 25899999999864 235689999998887432
Q ss_pred CCCCCHHHHHHHHhcc
Q 036794 633 GQRISVPLVQELVGLI 648 (1152)
Q Consensus 633 g~~IT~EdV~elVg~v 648 (1152)
...|+.++|.+++...
T Consensus 376 ~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 376 KVYVTAEHVLKAKKLA 391 (608)
T ss_pred CceecHHHHHHHHHHH
Confidence 2358999998877543
No 222
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.91 E-value=1.7e-08 Score=116.89 Aligned_cols=175 Identities=21% Similarity=0.285 Sum_probs=113.8
Q ss_pred cCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHH-------cccCCCCC-CCCCCCCccccccCCC
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL-------NCQSLEQP-KPCGFCNSCISHDRGK 491 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL-------~~~~~e~~-epcg~c~~c~~i~~g~ 491 (1152)
|.-++||+.....|.-.....++. .+||.|+.||||||++|+|+..| +|.+...+ .|-..|..|.......
T Consensus 16 f~aivGqd~lk~aL~l~av~P~ig-gvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~ 94 (423)
T COG1239 16 FTAIVGQDPLKLALGLNAVDPQIG-GALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDEL 94 (423)
T ss_pred hhhhcCchHHHHHHhhhhcccccc-eeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhcccc
Confidence 889999999988776554455555 47999999999999999999976 44433322 4445677776652111
Q ss_pred c------cceEEeCCC---------CCCCHHHHHHHHHH-Hh-hCC---CCCCceEEEEeCCCCCCHHHHHHHHHHHhh-
Q 036794 492 S------RNIKEVGPV---------GNFDFESILDLLDN-MV-TSR---PPSQYRIFVFDDCDTLSPDSWSAISKVVDR- 550 (1152)
Q Consensus 492 ~------~dviEIdaa---------s~~~vdeIreLle~-a~-~~P---~~a~~kVVIIDEID~Ls~eaqnaLLklLEe- 550 (1152)
. ..+-.++.. +..++. ..++. .. +.| ..++++|++|||+..|....++.||.++++
T Consensus 95 ~~~~~~~r~v~~v~lPl~ateDrvvGslDi~---ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG 171 (423)
T COG1239 95 EWLPREKRKVPFVALPLGATEDRLVGSLDIE---KALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEG 171 (423)
T ss_pred ccccccceecceecCCCccchhhhccccCHH---HHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhC
Confidence 0 000011111 112221 12221 11 111 136789999999999999999999999987
Q ss_pred ------------CCCCEEEEEEcCCC-CcchHHHHccce-EEEecCC-ChhHHHHHHHHHHHH
Q 036794 551 ------------APRRVVFILVSSSL-DALPHIIISRCQ-KFFFPKM-KDADIIYTLQWIASK 598 (1152)
Q Consensus 551 ------------pp~~VifILaTN~~-dkL~~aL~SR~q-vI~F~~p-~~~EI~eiL~~iakk 598 (1152)
.|.++++|.+.|-. ..|.+.|+.||. .++...+ +.++.++++.+.+.-
T Consensus 172 ~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 172 VNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred CceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 45677777777633 368888999976 4665554 456667777666554
No 223
>PHA02244 ATPase-like protein
Probab=98.90 E-value=6.5e-08 Score=111.70 Aligned_cols=121 Identities=19% Similarity=0.269 Sum_probs=81.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceE-EeCCCCCCCHHHHHHHHHHHhhCCCC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIK-EVGPVGNFDFESILDLLDNMVTSRPP 522 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dvi-EIdaas~~~vdeIreLle~a~~~P~~ 522 (1152)
..+||+||+|||||++|+++|..++......+ +. .. ..++. .+...+ .+. -..++..+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In--------~l-~d---~~~L~G~i~~~g--~~~-dgpLl~A~------ 178 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMN--------AI-MD---EFELKGFIDANG--KFH-ETPFYEAF------ 178 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEe--------cC-hH---HHhhcccccccc--ccc-chHHHHHh------
Confidence 34899999999999999999999875532111 00 00 00000 011111 111 01122222
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhh-----------CCCCEEEEEEcCCC-----------CcchHHHHccceEEEe
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDR-----------APRRVVFILVSSSL-----------DALPHIIISRCQKFFF 580 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEe-----------pp~~VifILaTN~~-----------dkL~~aL~SR~qvI~F 580 (1152)
..+.++||||++.++++++..|..++++ .+.++.||+++|.. ..+++++++||..|.|
T Consensus 179 ~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~ 258 (383)
T PHA02244 179 KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEF 258 (383)
T ss_pred hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeC
Confidence 4568999999999999999999999974 34688999999852 4588999999999999
Q ss_pred cCCCh
Q 036794 581 PKMKD 585 (1152)
Q Consensus 581 ~~p~~ 585 (1152)
..++.
T Consensus 259 dyp~~ 263 (383)
T PHA02244 259 DYDEK 263 (383)
T ss_pred CCCcH
Confidence 88764
No 224
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.89 E-value=8.2e-08 Score=109.84 Aligned_cols=146 Identities=20% Similarity=0.278 Sum_probs=90.9
Q ss_pred cCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeC
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVG 499 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEId 499 (1152)
...++|++.++..+..++..+.. +||-||||||||++|+.+|+.++..+.... |.....
T Consensus 23 ~~~~~g~~~~~~~~l~a~~~~~~---vll~G~PG~gKT~la~~lA~~l~~~~~~i~--------~t~~l~---------- 81 (329)
T COG0714 23 EKVVVGDEEVIELALLALLAGGH---VLLEGPPGVGKTLLARALARALGLPFVRIQ--------CTPDLL---------- 81 (329)
T ss_pred CCeeeccHHHHHHHHHHHHcCCC---EEEECCCCccHHHHHHHHHHHhCCCeEEEe--------cCCCCC----------
Confidence 34488999988888877777653 799999999999999999999985432111 111100
Q ss_pred CCCCCCHHHHHHH---HHH--HhhCCCC-CCceEEEEeCCCCCCHHHHHHHHHHHhh------------CCCCEEEEEEc
Q 036794 500 PVGNFDFESILDL---LDN--MVTSRPP-SQYRIFVFDDCDTLSPDSWSAISKVVDR------------APRRVVFILVS 561 (1152)
Q Consensus 500 aas~~~vdeIreL---le~--a~~~P~~-a~~kVVIIDEID~Ls~eaqnaLLklLEe------------pp~~VifILaT 561 (1152)
+..-++...+... ... +...|.+ +-..++++|||+..++..+++|+.+|++ .+...++|++.
T Consensus 82 p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~ 161 (329)
T COG0714 82 PSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQ 161 (329)
T ss_pred HHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEcc
Confidence 0000111111111 000 1111211 1115999999999999999999999998 11334444444
Q ss_pred C-----CCCcchHHHHccc-eEEEecCCChh
Q 036794 562 S-----SLDALPHIIISRC-QKFFFPKMKDA 586 (1152)
Q Consensus 562 N-----~~dkL~~aL~SR~-qvI~F~~p~~~ 586 (1152)
| ....++++++.|| ..+.+..|...
T Consensus 162 Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~ 192 (329)
T COG0714 162 NPGEYEGTYPLPEALLDRFLLRIYVDYPDSE 192 (329)
T ss_pred CccccCCCcCCCHHHHhhEEEEEecCCCCch
Confidence 6 2335899999999 56667666333
No 225
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.88 E-value=1e-07 Score=108.73 Aligned_cols=174 Identities=17% Similarity=0.194 Sum_probs=103.5
Q ss_pred cccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc--cCCCccceEEe-
Q 036794 422 DLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH--DRGKSRNIKEV- 498 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i--~~g~~~dviEI- 498 (1152)
+.+-.......+..++..++ .+||.||||||||++|+.+|+.++......+ |..-... ..|.. .+.+
T Consensus 46 ~y~f~~~~~~~vl~~l~~~~---~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~-----~~~~l~~~DliG~~--~~~l~ 115 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYDR---RVMVQGYHGTGKSTHIEQIAARLNWPCVRVN-----LDSHVSRIDLVGKD--AIVLK 115 (327)
T ss_pred CccCCHHHHHHHHHHHhcCC---cEEEEeCCCChHHHHHHHHHHHHCCCeEEEE-----ecCCCChhhcCCCc--eeecc
Confidence 34445556666666665433 4899999999999999999999986542211 0000000 00100 0000
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh--------------CCCCEEEEEEcCCC
Q 036794 499 GPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR--------------APRRVVFILVSSSL 564 (1152)
Q Consensus 499 daas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe--------------pp~~VifILaTN~~ 564 (1152)
+....+.+ ....+..+. ..+.++++||++.+.++.++.|..+||. +.+..+||+++|..
T Consensus 116 ~g~~~~~f--~~GpL~~A~-----~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~ 188 (327)
T TIGR01650 116 DGKQITEF--RDGILPWAL-----QHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTI 188 (327)
T ss_pred CCcceeEE--ecCcchhHH-----hCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCC
Confidence 00000000 000111111 2346799999999999999999999983 23467777777753
Q ss_pred C------------cchHHHHccceE-EEecCCChhHHHHHHHHHHHHcCCC--CCHHHHHHHHHh
Q 036794 565 D------------ALPHIIISRCQK-FFFPKMKDADIIYTLQWIASKEGIE--IDKDALKLIASR 614 (1152)
Q Consensus 565 d------------kL~~aL~SR~qv-I~F~~p~~~EI~eiL~~iakkeGl~--Id~dALelLAe~ 614 (1152)
. .++++++.|+.+ +.+..|+.++-.++|...+. ++. .+++.++++++.
T Consensus 189 g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~--~~~~~~~~~i~~~mV~l 251 (327)
T TIGR01650 189 GLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAK--GFDDTEGKDIINAMVRV 251 (327)
T ss_pred CcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhcc--CCCccchHHHHHHHHHH
Confidence 2 478999999975 67888888888787765432 221 124455555443
No 226
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.3e-08 Score=113.65 Aligned_cols=189 Identities=23% Similarity=0.342 Sum_probs=119.4
Q ss_pred ccCcHHHHHHHHHHHHh-------C-C------CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 423 LVGQNLVAQALSNAVMR-------R-K------VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 423 LVGQe~v~q~Lk~aL~~-------g-r------i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
+|||+.++..|.-++-. . . ....+||.||+|+|||.+|+.+|+.++.++.-.
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiA-------------- 128 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIA-------------- 128 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeec--------------
Confidence 78999888776543321 1 1 113699999999999999999999998663211
Q ss_pred CCCccceEEeCCCCCCC--HHH-HHHHHHHHhhCCCCCCceEEEEeCCCCCC--------------HHHHHHHHHHHhh-
Q 036794 489 RGKSRNIKEVGPVGNFD--FES-ILDLLDNMVTSRPPSQYRIFVFDDCDTLS--------------PDSWSAISKVVDR- 550 (1152)
Q Consensus 489 ~g~~~dviEIdaas~~~--vde-IreLle~a~~~P~~a~~kVVIIDEID~Ls--------------~eaqnaLLklLEe- 550 (1152)
|...+.-+++.+ ++. +..++..+.+.-..+.+++|+|||||+++ ...|.+||+++|.
T Consensus 129 -----DATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 129 -----DATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred -----cccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 111111223333 333 33445554444444778999999999983 3478999999997
Q ss_pred ----CC----------------CCEEEEEEcCC---------------------------------------CC-----c
Q 036794 551 ----AP----------------RRVVFILVSSS---------------------------------------LD-----A 566 (1152)
Q Consensus 551 ----pp----------------~~VifILaTN~---------------------------------------~d-----k 566 (1152)
|| .++.||+...- ++ -
T Consensus 204 vasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFG 283 (408)
T COG1219 204 VASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFG 283 (408)
T ss_pred eeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcC
Confidence 22 34455554210 00 0
Q ss_pred chHHHHccceE-EEecCCChhHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHhc---CCCHHHHHHHHHHH
Q 036794 567 LPHIIISRCQK-FFFPKMKDADIIYTLQW-----------IASKEGI--EIDKDALKLIASRS---DGSLRDAEMTLEQL 629 (1152)
Q Consensus 567 L~~aL~SR~qv-I~F~~p~~~EI~eiL~~-----------iakkeGl--~Id~dALelLAe~s---~GDLR~Ain~LEkL 629 (1152)
|.|.+.-|+.+ ..+..++.+++..+|.. .+..+++ .++++||..+|+.+ .-..|-+.++++.+
T Consensus 284 LIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~ 363 (408)
T COG1219 284 LIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEEL 363 (408)
T ss_pred CcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 34456667765 55788888888776642 2333444 47899999998872 23567777777776
Q ss_pred H
Q 036794 630 S 630 (1152)
Q Consensus 630 s 630 (1152)
.
T Consensus 364 l 364 (408)
T COG1219 364 L 364 (408)
T ss_pred H
Confidence 4
No 227
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.87 E-value=6.2e-08 Score=119.35 Aligned_cols=123 Identities=15% Similarity=0.233 Sum_probs=85.3
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhC---------------------CCCEEEEEEcCCC--CcchHHHHccce---
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRA---------------------PRRVVFILVSSSL--DALPHIIISRCQ--- 576 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEep---------------------p~~VifILaTN~~--dkL~~aL~SR~q--- 576 (1152)
++++++||||++.|+...|..|+++|++. +.++.+|++++.. ..+.+.|.+|+.
T Consensus 225 AnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~ 304 (637)
T PRK13765 225 AHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYG 304 (637)
T ss_pred CCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCe
Confidence 45789999999999999999999999651 2367888888763 356788999985
Q ss_pred -EEEecCC---ChhHHHHHHHHHHHH---c--CCCCCHHHHHHHHHhc---CCC-------HHHHHHHHHHHHHhC----
Q 036794 577 -KFFFPKM---KDADIIYTLQWIASK---E--GIEIDKDALKLIASRS---DGS-------LRDAEMTLEQLSLLG---- 633 (1152)
Q Consensus 577 -vI~F~~p---~~~EI~eiL~~iakk---e--Gl~Id~dALelLAe~s---~GD-------LR~Ain~LEkLsLlg---- 633 (1152)
.++|..- +++.+..+++.+++. . -..++++|+..|++++ .|+ +|++.+++..+...+
T Consensus 305 v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~ 384 (637)
T PRK13765 305 YEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEG 384 (637)
T ss_pred EEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhc
Confidence 3566542 244555555555543 2 2369999999998872 232 667777777654332
Q ss_pred -CCCCHHHHHHHH
Q 036794 634 -QRISVPLVQELV 645 (1152)
Q Consensus 634 -~~IT~EdV~elV 645 (1152)
..|+.++|.+++
T Consensus 385 ~~~i~~~~v~~a~ 397 (637)
T PRK13765 385 AELTTAEHVLEAK 397 (637)
T ss_pred cceecHHHHHHHH
Confidence 247778877665
No 228
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.86 E-value=1e-07 Score=115.40 Aligned_cols=157 Identities=13% Similarity=0.203 Sum_probs=95.9
Q ss_pred cCcccCcHHHHHHHHHHHHhCCCC-----------cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKVG-----------LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri~-----------~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
...+.|++.++..|.-++-.|... ..+||+|+||||||++|+.+++......... +.-..|..+.
T Consensus 202 ~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~----~~~~~~~~l~ 277 (509)
T smart00350 202 APSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTT----GKGSSAVGLT 277 (509)
T ss_pred CccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcC----CCCCCcCCcc
Confidence 346889999988888777665211 2699999999999999999998764321100 0001111111
Q ss_pred CCCccceEEeCCC-CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-------------CCC
Q 036794 489 RGKSRNIKEVGPV-GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-------------PRR 554 (1152)
Q Consensus 489 ~g~~~dviEIdaa-s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-------------p~~ 554 (1152)
.... .++. +.+.. +. ..-..++.++++|||++.++...+.+|+..|++. +.+
T Consensus 278 ~~~~-----~~~~~g~~~~-------~~--G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~ 343 (509)
T smart00350 278 AAVT-----RDPETREFTL-------EG--GALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNAR 343 (509)
T ss_pred ccce-----EccCcceEEe-------cC--ccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCC
Confidence 1000 0000 00000 00 0011256789999999999999999999999872 356
Q ss_pred EEEEEEcCCCC-------------cchHHHHccceE--EEecCCChhHHHHHHHH
Q 036794 555 VVFILVSSSLD-------------ALPHIIISRCQK--FFFPKMKDADIIYTLQW 594 (1152)
Q Consensus 555 VifILaTN~~d-------------kL~~aL~SR~qv--I~F~~p~~~EI~eiL~~ 594 (1152)
+.+|+++|-.. .+++++++||.. +-...++.+.-.+++..
T Consensus 344 ~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~ 398 (509)
T smart00350 344 CSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKH 398 (509)
T ss_pred cEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHH
Confidence 77888887321 589999999963 33344555444444443
No 229
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.86 E-value=2.2e-09 Score=112.26 Aligned_cols=101 Identities=17% Similarity=0.254 Sum_probs=64.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc-ccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHH----HHHHHHHHhh
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN-CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFES----ILDLLDNMVT 518 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~-~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vde----IreLle~a~~ 518 (1152)
..+||+||+|+|||.+|+++|+.+. .... .+..++.......+. +..++.....
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~---------------------~~~~~d~s~~~~~~~~~~~~~~l~~~~~~ 62 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSER---------------------PLIRIDMSEYSEGDDVESSVSKLLGSPPG 62 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCC---------------------EEEEEEGGGHCSHHHCSCHCHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCcc---------------------chHHHhhhcccccchHHhhhhhhhhcccc
Confidence 3689999999999999999999998 3321 122222211111111 1111111100
Q ss_pred CCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhh-----------CCCCEEEEEEcCCCC
Q 036794 519 SRPPSQYRIFVFDDCDTLSP-----------DSWSAISKVVDR-----------APRRVVFILVSSSLD 565 (1152)
Q Consensus 519 ~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLklLEe-----------pp~~VifILaTN~~d 565 (1152)
........||+|||||++++ ..++.||++||+ .-.+++||+++|--.
T Consensus 63 ~v~~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 63 YVGAEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HHHHHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred eeeccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 00012235999999999999 999999999997 226889999998544
No 230
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=8.1e-09 Score=129.20 Aligned_cols=148 Identities=21% Similarity=0.388 Sum_probs=111.6
Q ss_pred ccccccccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCC-------CCcEEEEEcCCCchHHHHHHHHHHHHcccCC
Q 036794 400 LGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRK-------VGLLYVFYGPHGTGKTSCARIFARALNCQSL 472 (1152)
Q Consensus 400 l~~~~~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gr-------i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~ 472 (1152)
+...+......+.+... +.|+||++++..+.++|...+ ....+||.||.|+|||.+|+++|..++...
T Consensus 545 ~~~~e~~~l~~L~~~L~----~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse- 619 (898)
T KOG1051|consen 545 LAEAEAERLKKLEERLH----ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSE- 619 (898)
T ss_pred hhhhHHHHHHHHHHHHH----hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCc-
Confidence 33344445556666664 679999999999999998733 344799999999999999999999986542
Q ss_pred CCCCCCCCCCccccccCCCccceEEe--CCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 036794 473 EQPKPCGFCNSCISHDRGKSRNIKEV--GPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR 550 (1152)
Q Consensus 473 e~~epcg~c~~c~~i~~g~~~dviEI--daas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe 550 (1152)
...+.++++.+..+... .+.++.+.+....+.+.+...|+ .||+||||+......++.|+++|++
T Consensus 620 ---------~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~----sVVLfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 620 ---------ENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPY----SVVLFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred ---------cceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCc----eEEEEechhhcCHHHHHHHHHHHhc
Confidence 22344455544432222 23456788888889999988776 7999999999999999999999998
Q ss_pred C-----------CCCEEEEEEcCCCC
Q 036794 551 A-----------PRRVVFILVSSSLD 565 (1152)
Q Consensus 551 p-----------p~~VifILaTN~~d 565 (1152)
. -.+++|||++|.-.
T Consensus 687 GrltDs~Gr~Vd~kN~I~IMTsn~~~ 712 (898)
T KOG1051|consen 687 GRLTDSHGREVDFKNAIFIMTSNVGS 712 (898)
T ss_pred CccccCCCcEeeccceEEEEecccch
Confidence 2 26899999988643
No 231
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=98.84 E-value=2.3e-08 Score=99.83 Aligned_cols=106 Identities=21% Similarity=0.331 Sum_probs=88.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHH------------hCCCCc
Q 036794 653 LVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFR------------RQPLSK 720 (1152)
Q Consensus 653 ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~------------r~~ls~ 720 (1152)
.|+++|+++.||...++++|+.|..+|++|..|++.|++.++.|+..+..... .....+|+ .+++++
T Consensus 1 pF~L~Da~L~G~~~ra~riL~~L~~Eg~ep~~lLw~L~rElr~L~~l~~~~~~-~~l~~~~~~~rIW~~Rq~l~~~Al~R 79 (125)
T PF14840_consen 1 PFQLIDALLAGDAKRALRILQGLQAEGVEPPILLWALQRELRLLIQLKQALAQ-QPLQQLFKQLRIWQKRQPLYQQALQR 79 (125)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTT-S-HHHHHHHHTT-CCHHHHHHHHHHH
T ss_pred CCcHHHHHHCCCHHHHHHHHHHHHHCCccHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHcCCCHhHHHHHHHHHHc
Confidence 38999999999999999999999999999999999999999999998876654 33333333 235668
Q ss_pred ccHHHHHHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHcCC
Q 036794 721 EEMEKLRQALKTLSEAEKQLRM--SNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 721 ~s~~kL~qaL~~L~eaD~qLK~--s~dprl~LE~lLLkLa~ 759 (1152)
.+...|++++..+..+|..+|+ ..+++..|+.+.+.||.
T Consensus 80 ls~~~L~~ll~~~a~iD~~iKg~~~~~~W~~L~~L~L~lc~ 120 (125)
T PF14840_consen 80 LSLQQLEQLLQLLAQIDRAIKGNYQGDPWDELEQLSLLLCG 120 (125)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHTSTTSTHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHcC
Confidence 9999999999999999999999 67999999999999996
No 232
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=4.9e-08 Score=120.97 Aligned_cols=204 Identities=18% Similarity=0.189 Sum_probs=147.4
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
...+++.-|-..++.++|.+..+..+...+.+....++ +|.|+||+|||.++..+|..+-....+..
T Consensus 157 ~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNP-vLiGEpGVGKTAIvEGLA~rIv~g~VP~~------------ 223 (786)
T COG0542 157 TRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNP-VLVGEPGVGKTAIVEGLAQRIVNGDVPES------------ 223 (786)
T ss_pred hhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCC-eEecCCCCCHHHHHHHHHHHHhcCCCCHH------------
Confidence 34455556667889999999999888888877666654 58899999999999999998865443321
Q ss_pred cCCCccceEEeC------CCCCCC--HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC---------HHHHHHHHHHHhh
Q 036794 488 DRGKSRNIKEVG------PVGNFD--FESILDLLDNMVTSRPPSQYRIFVFDDCDTLS---------PDSWSAISKVVDR 550 (1152)
Q Consensus 488 ~~g~~~dviEId------aas~~~--vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls---------~eaqnaLLklLEe 550 (1152)
-....++.+| ++...+ -+.+..+++.+...+ .-|+||||+|.+- .++.|.|...|..
T Consensus 224 --L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~----~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR 297 (786)
T COG0542 224 --LKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSK----NVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR 297 (786)
T ss_pred --HcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCC----CeEEEEechhhhcCCCcccccccchhhhhHHHHhc
Confidence 0011122222 112222 245777888876543 5899999999872 3466788888876
Q ss_pred CCCCEEEEEEcCCCC-----cchHHHHccceEEEecCCChhHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCC---
Q 036794 551 APRRVVFILVSSSLD-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK----EGIEIDKDALKLIASRSDGS--- 618 (1152)
Q Consensus 551 pp~~VifILaTN~~d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk----eGl~Id~dALelLAe~s~GD--- 618 (1152)
....+|.+|+..+ .-+++|.+|+|.|.+..|+.++...+|+-+... .++.|+++|+...+..+...
T Consensus 298 --GeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~d 375 (786)
T COG0542 298 --GELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPD 375 (786)
T ss_pred --CCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhccc
Confidence 6889999997432 256789999999999999999999998877654 58899999999888775432
Q ss_pred ---HHHHHHHHHHHHHh
Q 036794 619 ---LRDAEMTLEQLSLL 632 (1152)
Q Consensus 619 ---LR~Ain~LEkLsLl 632 (1152)
...|+..||.++..
T Consensus 376 R~LPDKAIDLiDeA~a~ 392 (786)
T COG0542 376 RFLPDKAIDLLDEAGAR 392 (786)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 23688888887543
No 233
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.81 E-value=1e-07 Score=114.85 Aligned_cols=156 Identities=17% Similarity=0.218 Sum_probs=95.9
Q ss_pred CCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC--C-----
Q 036794 418 RTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR--G----- 490 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~--g----- 490 (1152)
..|++++||+.+++.+.-++..+ +.++|.||+|+|||++|+.++..+....... +..+..+.. +
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~~g---~~vlliG~pGsGKTtlar~l~~llp~~~~~~------~le~~~i~s~~g~~~~~ 259 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAAGG---HNLLLFGPPGSGKTMLASRLQGILPPLTNEE------AIETARIWSLVGKLIDR 259 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhccCC---CEEEEEecCCCCHHHHHHHHhcccCCCCCcE------EEeccccccchhhhccc
Confidence 37999999999988887776543 5799999999999999999987653221100 000000000 0
Q ss_pred ---CccceEEeCCCCCCCHHHHHHHHHHH-hhC---CCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC------------
Q 036794 491 ---KSRNIKEVGPVGNFDFESILDLLDNM-VTS---RPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA------------ 551 (1152)
Q Consensus 491 ---~~~dviEIdaas~~~vdeIreLle~a-~~~---P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep------------ 551 (1152)
....+...... .... .++... ... -..+.++++||||++.|+...++.|+..||+.
T Consensus 260 ~~~~~~Pf~~p~~s--~s~~---~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~ 334 (499)
T TIGR00368 260 KQIKQRPFRSPHHS--ASKP---ALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIF 334 (499)
T ss_pred cccccCCccccccc--cchh---hhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCccee
Confidence 00000000000 0000 000000 000 01256789999999999999999999999873
Q ss_pred -CCCEEEEEEcCCC-----------------------CcchHHHHccceE-EEecCCChhH
Q 036794 552 -PRRVVFILVSSSL-----------------------DALPHIIISRCQK-FFFPKMKDAD 587 (1152)
Q Consensus 552 -p~~VifILaTN~~-----------------------dkL~~aL~SR~qv-I~F~~p~~~E 587 (1152)
+.++.+|+++|.- .++..+|++|+.. +.+++++..+
T Consensus 335 ~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 335 YPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred ccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 4678899998731 1577789999985 6777765443
No 234
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.80 E-value=1.2e-07 Score=116.45 Aligned_cols=200 Identities=16% Similarity=0.173 Sum_probs=117.8
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHH
Q 036794 430 AQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESI 509 (1152)
Q Consensus 430 ~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeI 509 (1152)
+..|.-..-...+++ +||.|++|||||++|++|++.+....+....+++. ..+. + .+..+ +
T Consensus 4 ~~Al~l~av~p~~g~-vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~-----------t~d~--L--~G~id---l 64 (589)
T TIGR02031 4 KLALTLLAVDPSLGG-VAIRARAGTGKTALARALAEILPPIMPFVELPLGV-----------TEDR--L--IGGID---V 64 (589)
T ss_pred HHHHHHhccCCCcce-EEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCccc-----------chhh--c--ccchh---h
Confidence 333333333344554 89999999999999999999876431100011100 0000 0 00000 0
Q ss_pred HHHHHH----HhhCCC-CCCceEEEEeCCCCCCHHHHHHHHHHHhhC-------------CCCEEEEEEcCCCC---cch
Q 036794 510 LDLLDN----MVTSRP-PSQYRIFVFDDCDTLSPDSWSAISKVVDRA-------------PRRVVFILVSSSLD---ALP 568 (1152)
Q Consensus 510 reLle~----a~~~P~-~a~~kVVIIDEID~Ls~eaqnaLLklLEep-------------p~~VifILaTN~~d---kL~ 568 (1152)
...+.. +..-+. .+.+++|||||++.+++..++.|+.+|++. +.++.||+++|..+ .++
T Consensus 65 ~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~ 144 (589)
T TIGR02031 65 EESLAGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLP 144 (589)
T ss_pred hhhhhcCcccCCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCC
Confidence 100000 001111 256689999999999999999999999873 24567777666443 699
Q ss_pred HHHHccceE-EEecC-CChhHHHHHHHHHH---------------------H--HcCCCCCHHHHHHHHHh---cCC-CH
Q 036794 569 HIIISRCQK-FFFPK-MKDADIIYTLQWIA---------------------S--KEGIEIDKDALKLIASR---SDG-SL 619 (1152)
Q Consensus 569 ~aL~SR~qv-I~F~~-p~~~EI~eiL~~ia---------------------k--keGl~Id~dALelLAe~---s~G-DL 619 (1152)
++|+.|+.. +.+.. ++.++..++++... + ...+.++++++++|+.. .+- .+
T Consensus 145 ~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~ 224 (589)
T TIGR02031 145 DHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGH 224 (589)
T ss_pred HHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCc
Confidence 999999885 44433 34444444443322 1 13567899998888877 222 36
Q ss_pred HHHHHHHHHH---HHhCC--CCCHHHHHHHHhcc
Q 036794 620 RDAEMTLEQL---SLLGQ--RISVPLVQELVGLI 648 (1152)
Q Consensus 620 R~Ain~LEkL---sLlg~--~IT~EdV~elVg~v 648 (1152)
|..+.++.-+ +.+.+ .++.+||..++..+
T Consensus 225 Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lv 258 (589)
T TIGR02031 225 RADLFAVRAAKAHAALHGRTEVTEEDLKLAVELV 258 (589)
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 7666665543 44433 48999988887654
No 235
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.79 E-value=1.1e-07 Score=109.59 Aligned_cols=196 Identities=16% Similarity=0.177 Sum_probs=121.0
Q ss_pred CCcC-cccCcHHHHHHHHHHHHhC-----CCCcEEEEEcCCCchHHHHHHHHHHHHccc-------------------CC
Q 036794 418 RTFR-DLVGQNLVAQALSNAVMRR-----KVGLLYVFYGPHGTGKTSCARIFARALNCQ-------------------SL 472 (1152)
Q Consensus 418 ~sFd-dLVGQe~v~q~Lk~aL~~g-----ri~~~yLL~GPpGTGKTtlARaLAkeL~~~-------------------~~ 472 (1152)
..|+ +++|+++++..|.++++.. .....++|+||||+|||++|++|++.++.- ..
T Consensus 47 ~~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~ 126 (361)
T smart00763 47 RFFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMH 126 (361)
T ss_pred cccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCc
Confidence 3688 8999999998888877662 223578999999999999999999988541 11
Q ss_pred CCC-------------CCC---------CCCCcccccc----CCCccceE---------------EeCCCCCCCHHHHHH
Q 036794 473 EQP-------------KPC---------GFCNSCISHD----RGKSRNIK---------------EVGPVGNFDFESILD 511 (1152)
Q Consensus 473 e~~-------------epc---------g~c~~c~~i~----~g~~~dvi---------------EIdaas~~~vdeIre 511 (1152)
+.+ ..+ ..|.-|.... .|....+. .+.+. .-.-.++.+
T Consensus 127 e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~-D~~~qdi~~ 205 (361)
T smart00763 127 EDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPK-DENNQDISE 205 (361)
T ss_pred cCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCC-CCCcccHHH
Confidence 110 000 1133333322 12111110 01111 111112333
Q ss_pred HHHHHh----------------h--CCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-----------CCCCEEEEEEcC
Q 036794 512 LLDNMV----------------T--SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-----------APRRVVFILVSS 562 (1152)
Q Consensus 512 Lle~a~----------------~--~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-----------pp~~VifILaTN 562 (1152)
++..+. + .-..+.++++-++|+.+...+.++.||.++++ .+.+.+||+++|
T Consensus 206 L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sN 285 (361)
T smart00763 206 LTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSN 285 (361)
T ss_pred HhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCC
Confidence 322110 0 00124678999999999999999999999997 223466777777
Q ss_pred CC-------CcchHHHHccceEEEecCCC-hhHHHHHHHHHHHHc---CCCCCHHHHHHHHHh
Q 036794 563 SL-------DALPHIIISRCQKFFFPKMK-DADIIYTLQWIASKE---GIEIDKDALKLIASR 614 (1152)
Q Consensus 563 ~~-------dkL~~aL~SR~qvI~F~~p~-~~EI~eiL~~iakke---Gl~Id~dALelLAe~ 614 (1152)
.. .+..++|+.||..+.++.+. ..+=.++.++.+... +..+.+.+++.++..
T Consensus 286 e~e~~~~~~~k~~eaf~dR~~~i~vpY~l~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 286 ESEWQRFKSNKKNEALLDRIIKVKVPYCLRVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAALF 348 (361)
T ss_pred HHHHhhhhccccchhhhhceEEEeCCCcCCHHHHHHHHHHHhccCcCcccccCchHHHHHHHH
Confidence 55 25688999999998887654 344445556555533 566788887777655
No 236
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.78 E-value=3.3e-08 Score=99.17 Aligned_cols=126 Identities=23% Similarity=0.314 Sum_probs=83.8
Q ss_pred cCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCC
Q 036794 424 VGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVG 502 (1152)
Q Consensus 424 VGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas 502 (1152)
||....++.+.+.+.. ......+||+|++||||+++|+.|+........ |+ .+..|....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~----~~-~~~~~~~~~-------------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANG----PF-IVIDCASLP-------------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-----C-CCCCHHCTC--------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCC----Ce-EEechhhCc--------------
Confidence 5777888888877765 355556999999999999999999886443211 11 111222111
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-CCCEEEEEEcCCC-C------cchHHHHcc
Q 036794 503 NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-PRRVVFILVSSSL-D------ALPHIIISR 574 (1152)
Q Consensus 503 ~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-p~~VifILaTN~~-d------kL~~aL~SR 574 (1152)
.++++. ...++|||+|++.|+.+.|..|+.+|+.. ..++++|+++... . .+.+.|..+
T Consensus 62 -------~~~l~~-------a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~ 127 (138)
T PF14532_consen 62 -------AELLEQ-------AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYR 127 (138)
T ss_dssp -------HHHHHH-------CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHH
T ss_pred -------HHHHHH-------cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHH
Confidence 234444 25589999999999999999999999863 5788999988643 2 366677777
Q ss_pred ce--EEEecC
Q 036794 575 CQ--KFFFPK 582 (1152)
Q Consensus 575 ~q--vI~F~~ 582 (1152)
+. .|.+|+
T Consensus 128 l~~~~i~lPp 137 (138)
T PF14532_consen 128 LSQLEIHLPP 137 (138)
T ss_dssp CSTCEEEE--
T ss_pred hCCCEEeCCC
Confidence 65 455554
No 237
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=6.2e-08 Score=108.53 Aligned_cols=133 Identities=23% Similarity=0.361 Sum_probs=89.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCC-------------HHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFD-------------FESIL 510 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~-------------vdeIr 510 (1152)
..+|++||||||||++++++|+.+.-..... -.+..++|++..+-+. +++|.
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~---------------y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ 242 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDR---------------YYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQ 242 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCc---------------cccceEEEEehhHHHHHHHhhhhhHHHHHHHHHH
Confidence 4799999999999999999999986442111 1122355665432211 23333
Q ss_pred HHHHHHhhCCCCCCceEEEEeCCCCCCH---------------HHHHHHHHHHhhCC-CCEEEEEEcCC-CCcchHHHHc
Q 036794 511 DLLDNMVTSRPPSQYRIFVFDDCDTLSP---------------DSWSAISKVVDRAP-RRVVFILVSSS-LDALPHIIIS 573 (1152)
Q Consensus 511 eLle~a~~~P~~a~~kVVIIDEID~Ls~---------------eaqnaLLklLEepp-~~VifILaTN~-~dkL~~aL~S 573 (1152)
++++. .+....|+|||++.+.. .+.|+||.-|+... .+-++|++|.+ .+.++.++..
T Consensus 243 ELv~d------~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD 316 (423)
T KOG0744|consen 243 ELVED------RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD 316 (423)
T ss_pred HHHhC------CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh
Confidence 33332 24456788999998732 25789999998843 34455666655 4689999999
Q ss_pred cceE-EEecCCChhHHHHHHHHHHH
Q 036794 574 RCQK-FFFPKMKDADIIYTLQWIAS 597 (1152)
Q Consensus 574 R~qv-I~F~~p~~~EI~eiL~~iak 597 (1152)
|..+ +.+.+|+...+..+++.-..
T Consensus 317 RADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 317 RADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred HhhheeecCCccHHHHHHHHHHHHH
Confidence 9995 66788888888887765544
No 238
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.73 E-value=1.3e-08 Score=101.39 Aligned_cols=115 Identities=23% Similarity=0.375 Sum_probs=66.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc-cCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH-DRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS 523 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i-~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a 523 (1152)
.+||+||||||||++|+.+|+.++...... .|... ............ .....+.. ..+.. ...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i--------~~~~~~~~~dl~g~~~~~-~~~~~~~~-~~l~~------a~~ 64 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRI--------NCSSDTTEEDLIGSYDPS-NGQFEFKD-GPLVR------AMR 64 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEE--------E-TTTSTHHHHHCEEET--TTTTCEEE--CCCT------THH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEE--------Eeccccccccceeeeeec-cccccccc-ccccc------ccc
Confidence 379999999999999999999985432110 00000 000000000100 00000000 00000 001
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhh-------------CCC------CEEEEEEcCCCC----cchHHHHccc
Q 036794 524 QYRIFVFDDCDTLSPDSWSAISKVVDR-------------APR------RVVFILVSSSLD----ALPHIIISRC 575 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~eaqnaLLklLEe-------------pp~------~VifILaTN~~d----kL~~aL~SR~ 575 (1152)
+..++||||++...++.++.|+.+|++ .+. +.+||+++|..+ .++++|++||
T Consensus 65 ~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 65 KGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp EEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 568999999999999999999999987 112 388999998777 7999999986
No 239
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.71 E-value=1.8e-06 Score=108.78 Aligned_cols=141 Identities=10% Similarity=0.035 Sum_probs=88.2
Q ss_pred CcccCcHHHHHHHHHHHHhCC--------------------CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCC
Q 036794 421 RDLVGQNLVAQALSNAVMRRK--------------------VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF 480 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~gr--------------------i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~ 480 (1152)
-.|.|++.++..|.-++-.|- ....+||.|+||||||.+|+.+++...........++..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 468899999988877775542 112699999999999999999998643221111111111
Q ss_pred CCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC---------
Q 036794 481 CNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA--------- 551 (1152)
Q Consensus 481 c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep--------- 551 (1152)
..|.... ...+... ..+ .++ . ..-..+..++++|||++.|+...+.+|+.+||+.
T Consensus 530 -vgLTa~~-------~~~d~~t-G~~-----~le-~-GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi 593 (915)
T PTZ00111 530 -VGLTASI-------KFNESDN-GRA-----MIQ-P-GAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGI 593 (915)
T ss_pred -ccccchh-------hhccccc-Ccc-----ccc-C-CcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCc
Confidence 0111110 0000000 000 000 0 0011256789999999999999999999999873
Q ss_pred ----CCCEEEEEEcCCC-------------CcchHHHHccceE
Q 036794 552 ----PRRVVFILVSSSL-------------DALPHIIISRCQK 577 (1152)
Q Consensus 552 ----p~~VifILaTN~~-------------dkL~~aL~SR~qv 577 (1152)
+.++.||+++|-. -.|+++|++||..
T Consensus 594 ~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDL 636 (915)
T PTZ00111 594 VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDL 636 (915)
T ss_pred ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcE
Confidence 3578888888742 1488999999974
No 240
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=4.7e-08 Score=114.72 Aligned_cols=136 Identities=21% Similarity=0.254 Sum_probs=78.6
Q ss_pred CcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccc---e
Q 036794 419 TFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRN---I 495 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~d---v 495 (1152)
.|.||+||+.++++|.-+...| |.+||+||||||||.+|+-+...|-....+.- ...+......+.... +
T Consensus 177 D~~DV~GQ~~AKrAleiAAAGg---HnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~----lE~s~I~s~~g~~~~~~~~ 249 (490)
T COG0606 177 DFKDVKGQEQAKRALEIAAAGG---HNLLLVGPPGTGKTMLASRLPGLLPPLSIPEA----LEVSAIHSLAGDLHEGCPL 249 (490)
T ss_pred chhhhcCcHHHHHHHHHHHhcC---CcEEEecCCCCchHHhhhhhcccCCCCChHHH----HHHHHHhhhcccccccCcc
Confidence 6999999999999998887665 56999999999999999988664422111000 000000000000000 0
Q ss_pred EEeCCCCCCCH-HHHHHHHHHHhhCCC-----CCCceEEEEeCCCCCCHHHHHHHHHHHhh-------------CCCCEE
Q 036794 496 KEVGPVGNFDF-ESILDLLDNMVTSRP-----PSQYRIFVFDDCDTLSPDSWSAISKVVDR-------------APRRVV 556 (1152)
Q Consensus 496 iEIdaas~~~v-deIreLle~a~~~P~-----~a~~kVVIIDEID~Ls~eaqnaLLklLEe-------------pp~~Vi 556 (1152)
...-+-....- .....++-.- ..|. -+.++|+||||+..+.....+.|..-||+ +|.+..
T Consensus 250 ~~~rPFr~PHHsaS~~aLvGGG-~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fq 328 (490)
T COG0606 250 KIHRPFRAPHHSASLAALVGGG-GVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQ 328 (490)
T ss_pred ceeCCccCCCccchHHHHhCCC-CCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeE
Confidence 00000000000 0001111110 1111 15678999999999999999999999987 456667
Q ss_pred EEEEcC
Q 036794 557 FILVSS 562 (1152)
Q Consensus 557 fILaTN 562 (1152)
+|+++|
T Consensus 329 lv~AmN 334 (490)
T COG0606 329 LVAAMN 334 (490)
T ss_pred EhhhcC
Confidence 777776
No 241
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.2e-06 Score=106.00 Aligned_cols=187 Identities=19% Similarity=0.241 Sum_probs=127.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCC
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP 522 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~ 522 (1152)
..++||+||+|+|||.+++++++++......+ ..++..........+.+...+..+......
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~h------------------v~~v~Cs~l~~~~~e~iQk~l~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAH------------------VEIVSCSTLDGSSLEKIQKFLNNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceE------------------EEEEechhccchhHHHHHHHHHHHHHHHHh
Confidence 34699999999999999999999976332110 001111122223466777666665444444
Q ss_pred CCceEEEEeCCCCCCHH----------HHHHHH----HHHhh---CCCCEEEEEEcCCCCcchHHHHcc--ce-EEEecC
Q 036794 523 SQYRIFVFDDCDTLSPD----------SWSAIS----KVVDR---APRRVVFILVSSSLDALPHIIISR--CQ-KFFFPK 582 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~e----------aqnaLL----klLEe---pp~~VifILaTN~~dkL~~aL~SR--~q-vI~F~~ 582 (1152)
-.+.||+||++|.+... ..+.|. +++.. ....+.||++.+....+.+.|.+. ++ ++.+++
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 45679999999988431 112222 33222 445678888888888888877654 44 478899
Q ss_pred CChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHhC---------CCCCHHHHHHHHhc
Q 036794 583 MKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAEMTLEQLSLLG---------QRISVPLVQELVGL 647 (1152)
Q Consensus 583 p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ain~LEkLsLlg---------~~IT~EdV~elVg~ 647 (1152)
|...++.++|..++++....+..+.+++++..++| ..+++.-..+++...+ +-+|.+++.+.+..
T Consensus 573 p~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~ 647 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKD 647 (952)
T ss_pred cchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHh
Confidence 99999999999999988878888899999999998 7888888888875432 13566666655543
No 242
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.56 E-value=6.3e-07 Score=85.39 Aligned_cols=119 Identities=19% Similarity=0.206 Sum_probs=68.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccc---------eEEeCCCCCCCHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRN---------IKEVGPVGNFDFESILDLLD 514 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~d---------viEIdaas~~~vdeIreLle 514 (1152)
..++|+||+|||||++++.++..+..... .+..+....... ....+.........+..+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGG----------GVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALA 72 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCC----------CEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHH
Confidence 46899999999999999999998876520 011111110000 01111112233445555555
Q ss_pred HHhhCCCCCCceEEEEeCCCCCCHHHHHHHHH--------HHhhCCCCEEEEEEcCC-CCcchHHHHccce
Q 036794 515 NMVTSRPPSQYRIFVFDDCDTLSPDSWSAISK--------VVDRAPRRVVFILVSSS-LDALPHIIISRCQ 576 (1152)
Q Consensus 515 ~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLk--------lLEepp~~VifILaTN~-~dkL~~aL~SR~q 576 (1152)
.+...+ ..+|||||++.+.......+.. ..........+|+++|. ....+..+..+..
T Consensus 73 ~~~~~~----~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 139 (148)
T smart00382 73 LARKLK----PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFD 139 (148)
T ss_pred HHHhcC----CCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhhccc
Confidence 554333 4899999999998776554443 22334567788888885 2233444443433
No 243
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.52 E-value=2e-06 Score=103.74 Aligned_cols=153 Identities=16% Similarity=0.237 Sum_probs=93.7
Q ss_pred CCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc--CCC----
Q 036794 418 RTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD--RGK---- 491 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~--~g~---- 491 (1152)
..|.++.|+..+++.+.-++.. ++.++|.||+|+|||++++.++..+.....+. ...+..+. .|.
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~---G~~llliG~~GsGKTtLak~L~gllpp~~g~e------~le~~~i~s~~g~~~~~ 258 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAG---GHNLLLIGPPGTGKTMLASRINGLLPDLSNEE------ALESAAILSLVNAESVQ 258 (506)
T ss_pred cCeEEEECcHHHHhhhheeccC---CcEEEEECCCCCcHHHHHHHHhccCCCCCCcE------EEecchhhhhhcccccc
Confidence 3788999999888877655543 46799999999999999999987654221110 00011110 000
Q ss_pred ----ccceEEeCCCCCCCHHHHHHHHHH-HhhC---CCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-------------
Q 036794 492 ----SRNIKEVGPVGNFDFESILDLLDN-MVTS---RPPSQYRIFVFDDCDTLSPDSWSAISKVVDR------------- 550 (1152)
Q Consensus 492 ----~~dviEIdaas~~~vdeIreLle~-a~~~---P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe------------- 550 (1152)
.+.+.. +....+.. .++-. .... -..+.++++||||++.+....++.|++.||+
T Consensus 259 ~~~~~rPfr~--ph~~~s~~---~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~ 333 (506)
T PRK09862 259 KQWRQRPFRS--PHHSASLT---AMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKIT 333 (506)
T ss_pred CCcCCCCccC--CCccchHH---HHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCccee
Confidence 000000 00000000 01100 0000 0125678999999999999999999999977
Q ss_pred CCCCEEEEEEcCCC---------------------CcchHHHHccceE-EEecCCC
Q 036794 551 APRRVVFILVSSSL---------------------DALPHIIISRCQK-FFFPKMK 584 (1152)
Q Consensus 551 pp~~VifILaTN~~---------------------dkL~~aL~SR~qv-I~F~~p~ 584 (1152)
.+.++.+|+++|.. .++..++++|+.. +.+++++
T Consensus 334 ~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~ 389 (506)
T PRK09862 334 YPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPP 389 (506)
T ss_pred ccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCC
Confidence 25678888888743 1477789999985 7777664
No 244
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.49 E-value=1.9e-07 Score=93.53 Aligned_cols=111 Identities=19% Similarity=0.267 Sum_probs=57.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc-cccCCCccceEEeCCC-CCCCHHHHHHHHHHHhhCCCCC
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI-SHDRGKSRNIKEVGPV-GNFDFESILDLLDNMVTSRPPS 523 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~-~i~~g~~~dviEIdaa-s~~~vdeIreLle~a~~~P~~a 523 (1152)
+||.|+||+|||++|+++|+.++..+.... |. ...-....++...+.. +.+. +...|.+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq--------~tpdllPsDi~G~~v~~~~~~~f~----------~~~GPif- 62 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQ--------FTPDLLPSDILGFPVYDQETGEFE----------FRPGPIF- 62 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE----------TT--HHHHHEEEEEETTTTEEE----------EEE-TT--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEE--------ecCCCCcccceeeeeeccCCCeeE----------eecChhh-
Confidence 799999999999999999999887642111 00 0000000111111110 0000 0112222
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhh-----------CCCCEEEEEEcCCCC-----cchHHHHccce
Q 036794 524 QYRIFVFDDCDTLSPDSWSAISKVVDR-----------APRRVVFILVSSSLD-----ALPHIIISRCQ 576 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~eaqnaLLklLEe-----------pp~~VifILaTN~~d-----kL~~aL~SR~q 576 (1152)
..|+++||+...++..|.+||..++| .|....+|++-|..+ .+|++++.|+.
T Consensus 63 -~~ill~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 63 -TNILLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp -SSEEEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred -hceeeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 25999999999999999999999998 233445555556444 58888888863
No 245
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.6e-06 Score=96.29 Aligned_cols=123 Identities=22% Similarity=0.272 Sum_probs=88.2
Q ss_pred ceEEEEeCCCCCCH------------HHHHHHHHHHhh----------CCCCEEEEEEc----CCCCcchHHHHccceE-
Q 036794 525 YRIFVFDDCDTLSP------------DSWSAISKVVDR----------APRRVVFILVS----SSLDALPHIIISRCQK- 577 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~------------eaqnaLLklLEe----------pp~~VifILaT----N~~dkL~~aL~SR~qv- 577 (1152)
.++|||||||++.. ..|.-||.++|. ...++.||.+. ..|..|.|.|.-|+.+
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIR 330 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIR 330 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceE
Confidence 57999999998732 356789999886 23566777765 3577788889999984
Q ss_pred EEecCCChhHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHhc-------C-CCHHHHHHHHHHHH----Hh
Q 036794 578 FFFPKMKDADIIYTLQW-----------IASKEGI--EIDKDALKLIASRS-------D-GSLRDAEMTLEQLS----LL 632 (1152)
Q Consensus 578 I~F~~p~~~EI~eiL~~-----------iakkeGl--~Id~dALelLAe~s-------~-GDLR~Ain~LEkLs----Ll 632 (1152)
+.+..++.+++..+|.. .++-+|+ .++++|++.||+.+ + =..|.+...|+++. +.
T Consensus 331 VEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLediSFe 410 (444)
T COG1220 331 VELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDISFE 410 (444)
T ss_pred EEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhCcc
Confidence 99999999998876642 2344565 47999999999882 1 24678888887763 22
Q ss_pred C-----C--CCCHHHHHHHHhc
Q 036794 633 G-----Q--RISVPLVQELVGL 647 (1152)
Q Consensus 633 g-----~--~IT~EdV~elVg~ 647 (1152)
+ + .|+.+-|.+-++.
T Consensus 411 A~d~~g~~v~Id~~yV~~~l~~ 432 (444)
T COG1220 411 APDMSGQKVTIDAEYVEEKLGD 432 (444)
T ss_pred CCcCCCCeEEEcHHHHHHHHHH
Confidence 2 2 2777777776654
No 246
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.48 E-value=6.6e-06 Score=92.99 Aligned_cols=207 Identities=14% Similarity=0.133 Sum_probs=116.3
Q ss_pred ccCcHHHH---HHHHHHHHhCCC--CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEE
Q 036794 423 LVGQNLVA---QALSNAVMRRKV--GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKE 497 (1152)
Q Consensus 423 LVGQe~v~---q~Lk~aL~~gri--~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviE 497 (1152)
-||.+.+. +.|...+...+. .+++||+|++|.|||++++.|.+.-....... .....++.
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~---------------~~~~PVv~ 100 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED---------------AERIPVVY 100 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC---------------CccccEEE
Confidence 37766544 455555555322 24699999999999999999988643211000 00112333
Q ss_pred eCCCCCCCHHHHHHHHHHHhhCCCC------------------CCceEEEEeCCCCCCH---HHHHHHHHHHhhC--CCC
Q 036794 498 VGPVGNFDFESILDLLDNMVTSRPP------------------SQYRIFVFDDCDTLSP---DSWSAISKVVDRA--PRR 554 (1152)
Q Consensus 498 Idaas~~~vdeIreLle~a~~~P~~------------------a~~kVVIIDEID~Ls~---eaqnaLLklLEep--p~~ 554 (1152)
+.....-+...+-..+-.....|+. -+-+++||||+|.+-. ..+..++.+|... .-.
T Consensus 101 vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ 180 (302)
T PF05621_consen 101 VQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQ 180 (302)
T ss_pred EecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccC
Confidence 3222211111111111111111110 2347999999999632 2233333333221 134
Q ss_pred EEEEEEcCCC--C--cchHHHHccceEEEecCCCh-hHHHHHHHHHHHHcCC----C-CCHHHHHHHHHhcCCCHHHHHH
Q 036794 555 VVFILVSSSL--D--ALPHIIISRCQKFFFPKMKD-ADIIYTLQWIASKEGI----E-IDKDALKLIASRSDGSLRDAEM 624 (1152)
Q Consensus 555 VifILaTN~~--d--kL~~aL~SR~qvI~F~~p~~-~EI~eiL~~iakkeGl----~-Id~dALelLAe~s~GDLR~Ain 624 (1152)
+.+|++.+.. . .-++.+.+|+..+.+++-.. ++....|..+-....+ . -+++....|...++|.+.++..
T Consensus 181 ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 181 IPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred CCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 4455554321 1 24567999999988887654 3555555554433222 1 3566778999999999999999
Q ss_pred HHHHHHHh-----CCCCCHHHHHHH
Q 036794 625 TLEQLSLL-----GQRISVPLVQEL 644 (1152)
Q Consensus 625 ~LEkLsLl-----g~~IT~EdV~el 644 (1152)
+|..++.. .+.||.+.+..+
T Consensus 261 ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 261 LLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred HHHHHHHHHHhcCCceecHHHHhhC
Confidence 99998655 235998877764
No 247
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.45 E-value=1.5e-06 Score=97.03 Aligned_cols=130 Identities=27% Similarity=0.375 Sum_probs=82.5
Q ss_pred cccCcHHHHHHHHHHHHh------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccce
Q 036794 422 DLVGQNLVAQALSNAVMR------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNI 495 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dv 495 (1152)
.|.||..+++.+.++++. .+.|.++-|+|++||||..++++||+.+....... .|+.......
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S--------~~V~~fvat~--- 151 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS--------PFVHHFVATL--- 151 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccc--------hhHHHhhhhc---
Confidence 368999888888888875 34455788999999999999999999876542211 1111111000
Q ss_pred EEeCCCCCCCHHHHHH-HHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-------CCEEEEEEcCCCC
Q 036794 496 KEVGPVGNFDFESILD-LLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-------RRVVFILVSSSLD 565 (1152)
Q Consensus 496 iEIdaas~~~vdeIre-Lle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-------~~VifILaTN~~d 565 (1152)
+-.....++.-++ +-..+...-....+.++|+||+|+|+++..++|-.+|+..+ ...+|||.+|.-.
T Consensus 152 ---hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg 226 (344)
T KOG2170|consen 152 ---HFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGG 226 (344)
T ss_pred ---cCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcc
Confidence 0001111221111 11111111112456899999999999999999999998633 5789999998643
No 248
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2.6e-06 Score=98.73 Aligned_cols=121 Identities=27% Similarity=0.437 Sum_probs=76.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCC--CHHH-HHHHHHHHhhCCC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNF--DFES-ILDLLDNMVTSRP 521 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~--~vde-IreLle~a~~~P~ 521 (1152)
.+||.||+|+|||.+|+.||+-++.+ +..|. |..+. .+++. +++. |..|+..+.+.-.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVP-------faIcD-cTtLT-----------QAGYVGeDVEsvi~KLl~~A~~nVe 288 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVP-------FAICD-CTTLT-----------QAGYVGEDVESVIQKLLQEAEYNVE 288 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCC-------eEEec-ccchh-----------hcccccccHHHHHHHHHHHccCCHH
Confidence 58999999999999999999998754 33443 33322 12222 2333 3334444433333
Q ss_pred CCCceEEEEeCCCCCC--------------HHHHHHHHHHHhh-------------CCC--------CEEEEEEcCCCCc
Q 036794 522 PSQYRIFVFDDCDTLS--------------PDSWSAISKVVDR-------------APR--------RVVFILVSSSLDA 566 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls--------------~eaqnaLLklLEe-------------pp~--------~VifILaTN~~dk 566 (1152)
.++.+||||||+|++. ...|.+||++||. ++. ++.||+ ......
T Consensus 289 kAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFia-sGAF~~ 367 (564)
T KOG0745|consen 289 KAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIA-SGAFVG 367 (564)
T ss_pred HHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEe-cccccc
Confidence 4678999999999985 3468999999986 111 222332 223344
Q ss_pred chHHHHccceE--EEecCCCh
Q 036794 567 LPHIIISRCQK--FFFPKMKD 585 (1152)
Q Consensus 567 L~~aL~SR~qv--I~F~~p~~ 585 (1152)
|...|.+|... +-|..++.
T Consensus 368 Ldk~I~rR~~d~slGFg~~s~ 388 (564)
T KOG0745|consen 368 LDKIISRRLDDKSLGFGAPSS 388 (564)
T ss_pred hHHHHHHhhcchhcccCCCCC
Confidence 77777777763 66777655
No 249
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.33 E-value=1.5e-05 Score=88.28 Aligned_cols=186 Identities=15% Similarity=0.182 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cc-----eEEeC
Q 036794 427 NLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RN-----IKEVG 499 (1152)
Q Consensus 427 e~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~d-----viEId 499 (1152)
+..++.|.+.+.. ......+.|+|++|+|||++|..+++...... .+. +.+ ......... .. ...+.
T Consensus 2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~-~f~---~v~--wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKN-RFD---GVI--WVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCC-CCT---EEE--EEEEES-SCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccc-ccc---ccc--cccccccccccccccccccccc
Confidence 4567778888877 34456899999999999999999987733111 000 000 000000000 00 00000
Q ss_pred CC-----CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHcc
Q 036794 500 PV-----GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISR 574 (1152)
Q Consensus 500 aa-----s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR 574 (1152)
.. ...+.+...+.+.... ..++.+||||+++... .+..|...+.....+..+|++|.+.. +...+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~-v~~~~~~~ 148 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELL----KDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRS-VAGSLGGT 148 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHH----CCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGG-GGTTHHSC
T ss_pred ccccccccccccccccccchhhh----ccccceeeeeeecccc--cccccccccccccccccccccccccc-cccccccc
Confidence 00 1122233333332221 1346799999987544 44455555544445788888887654 33333333
Q ss_pred ceEEEecCCChhHHHHHHHHHHHHcC---CCCCHHHHHHHHHhcCCCHHHHHHH
Q 036794 575 CQKFFFPKMKDADIIYTLQWIASKEG---IEIDKDALKLIASRSDGSLRDAEMT 625 (1152)
Q Consensus 575 ~qvI~F~~p~~~EI~eiL~~iakkeG---l~Id~dALelLAe~s~GDLR~Ain~ 625 (1152)
...+.+.+++.++..+++...+.... ..-.++.++.|++.++|.+-.+.-+
T Consensus 149 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 202 (287)
T PF00931_consen 149 DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLI 202 (287)
T ss_dssp EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 67899999999999999988875443 1222456778899998866554333
No 250
>PRK08116 hypothetical protein; Validated
Probab=98.30 E-value=1.9e-06 Score=96.47 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=84.9
Q ss_pred hhhCCCCcCcccC---cHHHHHHHHHHHHh----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 413 QKYMPRTFRDLVG---QNLVAQALSNAVMR----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 413 eKyRP~sFddLVG---Qe~v~q~Lk~aL~~----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|+-.+|++++. +..++..+.+.+.. ...+.+++|+|++|||||++|.+|++++..... +
T Consensus 77 ~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~----~-------- 144 (268)
T PRK08116 77 EKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGV----P-------- 144 (268)
T ss_pred HHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCC----e--------
Confidence 4555567887753 33344444433332 223346999999999999999999999864311 1
Q ss_pred cccCCCccceEEeCCC----------CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCC--CCCHHHHHHHHHHHhh-CC
Q 036794 486 SHDRGKSRNIKEVGPV----------GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCD--TLSPDSWSAISKVVDR-AP 552 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaa----------s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID--~Ls~eaqnaLLklLEe-pp 552 (1152)
+..++.. .........++++.+ ....+|||||++ ..+...+..|+.+|+. ..
T Consensus 145 ---------v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l------~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~ 209 (268)
T PRK08116 145 ---------VIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL------VNADLLILDDLGAERDTEWAREKVYNIIDSRYR 209 (268)
T ss_pred ---------EEEEEHHHHHHHHHHHHhccccccHHHHHHHh------cCCCEEEEecccCCCCCHHHHHHHHHHHHHHHH
Confidence 1111100 000001111223322 334799999995 4566677788888886 23
Q ss_pred CCEEEEEEcCCCC-c----chHHHHcc----ceEEEecCCCh
Q 036794 553 RRVVFILVSSSLD-A----LPHIIISR----CQKFFFPKMKD 585 (1152)
Q Consensus 553 ~~VifILaTN~~d-k----L~~aL~SR----~qvI~F~~p~~ 585 (1152)
....+|++||... . +...+.+| |..|.|...+-
T Consensus 210 ~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 210 KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 4456888888542 2 34456777 66677776553
No 251
>PRK12377 putative replication protein; Provisional
Probab=98.29 E-value=2.8e-06 Score=94.18 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=73.0
Q ss_pred hhhCCCCcCccc----CcHHHHHHHHHHHHhC-CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 413 QKYMPRTFRDLV----GQNLVAQALSNAVMRR-KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 413 eKyRP~sFddLV----GQe~v~q~Lk~aL~~g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
..+...+|+.+. |+..++..+...+..- .....++|+||+|||||++|.+|++.+......
T Consensus 66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~-------------- 131 (248)
T PRK12377 66 PLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRS-------------- 131 (248)
T ss_pred cccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCC--------------
Confidence 345556898886 3444555444443321 123468999999999999999999998643110
Q ss_pred cCCCccceEEeCCCCC--------CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCC--CCHHHHHHHHHHHhhCC-CCEE
Q 036794 488 DRGKSRNIKEVGPVGN--------FDFESILDLLDNMVTSRPPSQYRIFVFDDCDT--LSPDSWSAISKVVDRAP-RRVV 556 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~--------~~vdeIreLle~a~~~P~~a~~kVVIIDEID~--Ls~eaqnaLLklLEepp-~~Vi 556 (1152)
+..+....- .......++++.+ ....||||||++. ++...+..|..+++..- ....
T Consensus 132 -------v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l------~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~p 198 (248)
T PRK12377 132 -------VIVVTVPDVMSRLHESYDNGQSGEKFLQEL------CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRS 198 (248)
T ss_pred -------eEEEEHHHHHHHHHHHHhccchHHHHHHHh------cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 111110000 0000111233332 4558999999955 45667789999998733 3455
Q ss_pred EEEEcCC
Q 036794 557 FILVSSS 563 (1152)
Q Consensus 557 fILaTN~ 563 (1152)
+|++||.
T Consensus 199 tiitSNl 205 (248)
T PRK12377 199 VGMLTNL 205 (248)
T ss_pred EEEEcCC
Confidence 6778874
No 252
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.28 E-value=5.3e-05 Score=84.29 Aligned_cols=207 Identities=14% Similarity=0.213 Sum_probs=114.2
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccc-eE-EeCCCCCCCHH
Q 036794 430 AQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRN-IK-EVGPVGNFDFE 507 (1152)
Q Consensus 430 ~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~d-vi-EIdaas~~~vd 507 (1152)
++++.......+.| +||.||.|.||+.+|+-|-..-.... ....++ ...+|........+. ++ .+.. .-.+..
T Consensus 197 ieqierva~rsr~p--~ll~gptgagksflarriyelk~arh-q~sg~f-vevncatlrgd~amsalfghvkg-aftga~ 271 (531)
T COG4650 197 IEQIERVAIRSRAP--ILLNGPTGAGKSFLARRIYELKQARH-QFSGAF-VEVNCATLRGDTAMSALFGHVKG-AFTGAR 271 (531)
T ss_pred HHHHHHHHhhccCC--eEeecCCCcchhHHHHHHHHHHHHHH-hcCCce-EEEeeeeecCchHHHHHHhhhcc-ccccch
Confidence 34444333334444 89999999999999998854211110 111111 112233221111100 00 0000 001111
Q ss_pred HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC---C--------CCEEEEEEcC-C------CCcchH
Q 036794 508 SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA---P--------RRVVFILVSS-S------LDALPH 569 (1152)
Q Consensus 508 eIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep---p--------~~VifILaTN-~------~dkL~~ 569 (1152)
.-+ +.+ -..++++++|+|||+.|..+.+..||+.+|+. | .+.-+|.-|- + ...+.+
T Consensus 272 ~~r---~gl---lrsadggmlfldeigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fre 345 (531)
T COG4650 272 ESR---EGL---LRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRE 345 (531)
T ss_pred hhh---hhh---hccCCCceEehHhhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHH
Confidence 111 111 11267789999999999999999999999982 1 2233343332 1 124666
Q ss_pred HHHccceEEEecCCChhHHHH--------HHHHHHHHcC--CCCCHHHHHHHHH-------hcCCCHHHHHHHHHHHHHh
Q 036794 570 IIISRCQKFFFPKMKDADIIY--------TLQWIASKEG--IEIDKDALKLIAS-------RSDGSLRDAEMTLEQLSLL 632 (1152)
Q Consensus 570 aL~SR~qvI~F~~p~~~EI~e--------iL~~iakkeG--l~Id~dALelLAe-------~s~GDLR~Ain~LEkLsLl 632 (1152)
.|..|.....|..|...+..+ -|...+...| +.+..+|-..-.. .|.||.|++-.-+-+++.+
T Consensus 346 dl~arinlwtf~lpgl~qr~ediepnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatl 425 (531)
T COG4650 346 DLYARINLWTFTLPGLRQRQEDIEPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATL 425 (531)
T ss_pred HHHHhhheeeeeccccccCccccCCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHH
Confidence 788888877776664433222 3444454444 3455555433222 2789999999999888766
Q ss_pred --CCCCCHHHHHHHHhc
Q 036794 633 --GQRISVPLVQELVGL 647 (1152)
Q Consensus 633 --g~~IT~EdV~elVg~ 647 (1152)
+++||.+.|++-+..
T Consensus 426 ad~grit~~~ve~ei~r 442 (531)
T COG4650 426 ADSGRITLDVVEDEINR 442 (531)
T ss_pred hcCCceeHHHHHHHHHH
Confidence 568999888776543
No 253
>PF13173 AAA_14: AAA domain
Probab=98.25 E-value=5.1e-06 Score=82.35 Aligned_cols=120 Identities=21% Similarity=0.231 Sum_probs=72.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHH-HHHHHHHHhhCCCC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFES-ILDLLDNMVTSRPP 522 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vde-IreLle~a~~~P~~ 522 (1152)
.+++|+||+|+|||++++.+++.+... . .+..++-........ ..++.+.+... ..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~---~-------------------~~~yi~~~~~~~~~~~~~~~~~~~~~~-~~ 59 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPP---E-------------------NILYINFDDPRDRRLADPDLLEYFLEL-IK 59 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhccc---c-------------------cceeeccCCHHHHHHhhhhhHHHHHHh-hc
Confidence 468999999999999999999886610 0 022222111000000 00011222111 11
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc----chHHHHccceEEEecCCChhHH
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA----LPHIIISRCQKFFFPKMKDADI 588 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk----L~~aL~SR~qvI~F~~p~~~EI 588 (1152)
.+..+|||||++.++ +.+..+..+++.. .++.||+++..... ....+..|...+.+.|++-.|+
T Consensus 60 ~~~~~i~iDEiq~~~-~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLP-DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhc-cHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 256899999999986 4555555555553 57788888765443 3445777888899999887664
No 254
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=2.1e-05 Score=96.49 Aligned_cols=181 Identities=20% Similarity=0.303 Sum_probs=116.9
Q ss_pred CcCcccCcHHHHHHHHHHHHhC--------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCC
Q 036794 419 TFRDLVGQNLVAQALSNAVMRR--------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~g--------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g 490 (1152)
+|-..-+++..+..+.+.+.-. .....+||+|+||+|||++.+++|++++....+. .|..+...
T Consensus 399 n~~~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~ev--------dc~el~~~ 470 (953)
T KOG0736|consen 399 NSLSPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEV--------DCYELVAE 470 (953)
T ss_pred ccCCCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEec--------cHHHHhhc
Confidence 3444556666555555555432 3446899999999999999999999998764332 23333221
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH--------HHHHHHHHHh--h---CCCCEEE
Q 036794 491 KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD--------SWSAISKVVD--R---APRRVVF 557 (1152)
Q Consensus 491 ~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e--------aqnaLLklLE--e---pp~~Vif 557 (1152)
.. ...-......+..+... ...||||-.+|-+.-+ .+..+...+. . ....++|
T Consensus 471 s~----------~~~etkl~~~f~~a~~~----~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~iv 536 (953)
T KOG0736|consen 471 SA----------SHTETKLQAIFSRARRC----SPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIV 536 (953)
T ss_pred cc----------chhHHHHHHHHHHHhhc----CceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEE
Confidence 11 11122344455555443 3468888877766321 1222222222 1 3468999
Q ss_pred EEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHH
Q 036794 558 ILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-SLRDAE 623 (1152)
Q Consensus 558 ILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-DLR~Ai 623 (1152)
|.+|+..+.+|+.+++-+. .|.++.++++++.++|+++..... ++.+ .++.++.++.| ..+++.
T Consensus 537 v~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~--~n~~v~~k~~a~~t~gfs~~~L~ 603 (953)
T KOG0736|consen 537 VATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP--LNQDVNLKQLARKTSGFSFGDLE 603 (953)
T ss_pred EEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc--cchHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999998876 599999999999999999987655 4433 46667777665 444443
No 255
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.23 E-value=1.1e-05 Score=97.80 Aligned_cols=159 Identities=17% Similarity=0.193 Sum_probs=98.3
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCC-----------cEEEEEcCCCchHHHHHHHHHHHHcccCCCCC
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVG-----------LLYVFYGPHGTGKTSCARIFARALNCQSLEQP 475 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~-----------~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~ 475 (1152)
.|..|.+-..| +|.|++.++..|.-++-.|... -.+||+|.||||||.+.+.+++.+.......
T Consensus 419 iy~lLa~SiAP----sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTS- 493 (804)
T KOG0478|consen 419 IYELLARSIAP----SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTS- 493 (804)
T ss_pred HHHHHHHhhch----hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeec-
Confidence 34555555543 5778888888887766553221 2699999999999999999998865442211
Q ss_pred CCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-----
Q 036794 476 KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR----- 550 (1152)
Q Consensus 476 epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe----- 550 (1152)
|.......+.+.-..+. +-++++-+. ..-..++.++-.|||+|+|+....+.|+.+||.
T Consensus 494 --------------GkGsSavGLTayVtrd~-dtkqlVLes-GALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSI 557 (804)
T KOG0478|consen 494 --------------GKGSSAVGLTAYVTKDP-DTRQLVLES-GALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSI 557 (804)
T ss_pred --------------CCccchhcceeeEEecC-ccceeeeec-CcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhH
Confidence 11100010000000000 011111110 011226778999999999999999999999997
Q ss_pred --------CCCCEEEEEEcCC------CC-------cchHHHHccceE--EEecCCChh
Q 036794 551 --------APRRVVFILVSSS------LD-------ALPHIIISRCQK--FFFPKMKDA 586 (1152)
Q Consensus 551 --------pp~~VifILaTN~------~d-------kL~~aL~SR~qv--I~F~~p~~~ 586 (1152)
.+..+-+|+++|- +. .||++|++||.. +-|.++++.
T Consensus 558 AKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 558 AKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred hhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchh
Confidence 3456667888772 21 389999999995 345666554
No 256
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.22 E-value=6.3e-06 Score=91.19 Aligned_cols=144 Identities=18% Similarity=0.160 Sum_probs=83.2
Q ss_pred hhhhCCCCcCccc----CcHHHHHHHHHHHHhCC-CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 412 TQKYMPRTFRDLV----GQNLVAQALSNAVMRRK-VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 412 ~eKyRP~sFddLV----GQe~v~q~Lk~aL~~gr-i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.+.|++.+|+++. ++..++..+...+..-. ....++|+|++|||||++|.+|++++..... .
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~----~--------- 129 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGK----S--------- 129 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCC----e---------
Confidence 4567778999976 33445566665554321 1236899999999999999999999864311 0
Q ss_pred ccCCCccceEEeCCCCC---------CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhh-CCCC
Q 036794 487 HDRGKSRNIKEVGPVGN---------FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD--SWSAISKVVDR-APRR 554 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~---------~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e--aqnaLLklLEe-pp~~ 554 (1152)
+..+....- ..-....++++.+ ....+|||||++..... ....|..+++. ....
T Consensus 130 --------v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l------~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~ 195 (244)
T PRK07952 130 --------VLIITVADIMSAMKDTFSNSETSEEQLLNDL------SNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSK 195 (244)
T ss_pred --------EEEEEHHHHHHHHHHHHhhccccHHHHHHHh------ccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 111110000 0000112233332 34579999999887543 33467778876 3335
Q ss_pred EEEEEEcCCCC-----cchHHHHccc-----eEEEecC
Q 036794 555 VVFILVSSSLD-----ALPHIIISRC-----QKFFFPK 582 (1152)
Q Consensus 555 VifILaTN~~d-----kL~~aL~SR~-----qvI~F~~ 582 (1152)
..+|++||... .+...+.+|+ ..+.|.-
T Consensus 196 ~~tiitSNl~~~~l~~~~g~ri~sRl~~~~~~~i~f~~ 233 (244)
T PRK07952 196 RPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNW 233 (244)
T ss_pred CCEEEeCCCCHHHHHHHhChHHHHHHHHCCceEEEeeC
Confidence 66778887532 2334455554 2566654
No 257
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.19 E-value=6.6e-05 Score=92.44 Aligned_cols=204 Identities=13% Similarity=0.094 Sum_probs=120.9
Q ss_pred cHHHHHHHHHHHHhC-CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCC
Q 036794 426 QNLVAQALSNAVMRR-KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNF 504 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~ 504 (1152)
|+.++..|.-..... .++ ++||.|+.||+|+++++.++..+....+...-|- +...+ .-+
T Consensus 8 ~~~~~~Al~l~av~p~~~g-Gv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~-----------~~t~~-------~L~ 68 (584)
T PRK13406 8 WADAALAAALLAVDPAGLG-GVVLRARAGPVRDRWLAALRALLPAGTPLRRLPP-----------GIADD-------RLL 68 (584)
T ss_pred HHHHHHHHHHhCcCccccc-eEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCC-----------CCcHH-------Hcc
Confidence 556665554333333 443 6899999999999999999988754211000000 00000 001
Q ss_pred CHHHHHHHHHHHh--hCC---CCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-------------CCCEEEEEEcC---C
Q 036794 505 DFESILDLLDNMV--TSR---PPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-------------PRRVVFILVSS---S 563 (1152)
Q Consensus 505 ~vdeIreLle~a~--~~P---~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-------------p~~VifILaTN---~ 563 (1152)
+--++...+..-. ..| ..+.++||||||+..+.+..++.|+..|++. |.+..+|++-| +
T Consensus 69 Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~ 148 (584)
T PRK13406 69 GGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEE 148 (584)
T ss_pred CCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhc
Confidence 1111111221111 011 1256789999999999999999999999982 34444444312 1
Q ss_pred CCcchHHHHccceE-EEecCCChhHHH-------HHHHHHHHHcCCCCCHHHHHHHHHh---cCC-CHHHHHHHHHHH--
Q 036794 564 LDALPHIIISRCQK-FFFPKMKDADII-------YTLQWIASKEGIEIDKDALKLIASR---SDG-SLRDAEMTLEQL-- 629 (1152)
Q Consensus 564 ~dkL~~aL~SR~qv-I~F~~p~~~EI~-------eiL~~iakkeGl~Id~dALelLAe~---s~G-DLR~Ain~LEkL-- 629 (1152)
...+++.++.||.. +.+..++..+.. .++.....-.++.++++.+++++.. .+- ++|..+.++.-+
T Consensus 149 ~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa 228 (584)
T PRK13406 149 DERAPAALADRLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARA 228 (584)
T ss_pred ccCCCHHhHhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 23599999999984 777776654332 1222222224788999999988775 222 567666666554
Q ss_pred -HHhCC--CCCHHHHHHHHhcc
Q 036794 630 -SLLGQ--RISVPLVQELVGLI 648 (1152)
Q Consensus 630 -sLlg~--~IT~EdV~elVg~v 648 (1152)
+.+.+ .|+.+||.+++..+
T Consensus 229 ~AaL~Gr~~V~~~dv~~Aa~lv 250 (584)
T PRK13406 229 AAALAGRTAVEEEDLALAARLV 250 (584)
T ss_pred HHHHcCCCCCCHHHHHHHHHHH
Confidence 34433 59999998887554
No 258
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.10 E-value=0.00011 Score=89.34 Aligned_cols=162 Identities=12% Similarity=0.083 Sum_probs=93.2
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhh-----------CCCCEEEEEEcCCC-------CcchHHHHccceEEEecCCC-
Q 036794 524 QYRIFVFDDCDTLSPDSWSAISKVVDR-----------APRRVVFILVSSSL-------DALPHIIISRCQKFFFPKMK- 584 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~eaqnaLLklLEe-----------pp~~VifILaTN~~-------dkL~~aL~SR~qvI~F~~p~- 584 (1152)
.++++=+=|+-+.+.+....||.+.++ .+-+.+||..||+. ++-.++|+.|+.+|.+|-.-
T Consensus 255 NrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~~~~~~i~~D~vIiaHsNE~E~~~F~~nk~nEA~~DRi~~V~VPY~lr 334 (644)
T PRK15455 255 NQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGTEGIGAIPFDGIILAHSNESEWQTFRNNKNNEAFLDRIYIVKVPYCLR 334 (644)
T ss_pred cCCcEeeHHHhcCcHHHHHHhcCCCccCcccCCCCcceeccceeEEecCCHHHHHHHhcCccchhhhceEEEEeCCccCC
Confidence 345555557777777777777777766 22355677777754 35677899999998877543
Q ss_pred hhHHHHHHHHHHHH---cCCCCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHHhCCC-C-----CHHHHHHHHhcc
Q 036794 585 DADIIYTLQWIASK---EGIEIDKDALKLIASRS-------DGSLRDAEMTLEQLSLLGQR-I-----SVPLVQELVGLI 648 (1152)
Q Consensus 585 ~~EI~eiL~~iakk---eGl~Id~dALelLAe~s-------~GDLR~Ain~LEkLsLlg~~-I-----T~EdV~elVg~v 648 (1152)
..+=.++-++..+. .+..+.|.+++.+|..+ +-+ .+.++++-+|++. + +..+++++-...
T Consensus 335 ~~eE~kIYeKll~~s~l~~~hiAPhtle~aA~faVLTRL~~p~~----~~l~~KmklYdGe~~~~~~~~~~~~~E~rd~a 410 (644)
T PRK15455 335 VSEEIKIYEKLLRNSELAHAPCAPGTLEMLARFSVLSRLKEPEN----SSIYSKMRVYDGESLKDTDPKAKSYQEYRDYA 410 (644)
T ss_pred hhHHHHHHHHHhcCccccCCCcCccHHHHHHHHHHHhcCCCCCc----CCHHHHHHhhcccccccCCCCcccHHHHHhhc
Confidence 23333444555544 35678888888777661 122 4588999888542 3 334444443211
Q ss_pred chhhHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHH
Q 036794 649 SDEKLVDLLDLALSADTVNTVKNLRVIMET-----GVEPLALMSQLATVITD 695 (1152)
Q Consensus 649 ~ee~ifdLldAils~d~~~ALk~L~~LL~~-----G~dPl~ILs~La~qiRd 695 (1152)
..+ +.+..-++.-+.+.|...+.. ..+|+.++..|-..+..
T Consensus 411 ~~~------EGm~GiS~Rf~~~~ls~a~~~~~~~~~~nP~~~l~~Le~~i~~ 456 (644)
T PRK15455 411 GVD------EGMNGLSTRFAFKILSRVFNFDHTEVAANPVHLMYVLEQQIER 456 (644)
T ss_pred CCC------CCCCCCCHHHHHHHHHHHHccCcccccCCHHHHHHHHHHHHhh
Confidence 110 011111344444555554444 45777777777665543
No 259
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.09 E-value=0.00017 Score=79.67 Aligned_cols=188 Identities=20% Similarity=0.236 Sum_probs=115.3
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc---------cceE
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS---------RNIK 496 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~---------~dvi 496 (1152)
+..++..+..++..++. .+.++|+-|+|||.+.|++...++.... |. +.+..-.. ....
T Consensus 36 h~e~l~~l~~~i~d~qg--~~~vtGevGsGKTv~~Ral~~s~~~d~~-----~~-----v~i~~~~~s~~~~~~ai~~~l 103 (269)
T COG3267 36 HNEALLMLHAAIADGQG--ILAVTGEVGSGKTVLRRALLASLNEDQV-----AV-----VVIDKPTLSDATLLEAIVADL 103 (269)
T ss_pred hhHHHHHHHHHHhcCCc--eEEEEecCCCchhHHHHHHHHhcCCCce-----EE-----EEecCcchhHHHHHHHHHHHh
Confidence 45777888888887764 3689999999999999977777663311 11 00000000 0000
Q ss_pred EeCCCCCCC--HHHHHHHHHHHhhCCCCCCc-eEEEEeCCCCCCHHHHHHHHHHHhh---CCCCEEEEEEcC-CCC---c
Q 036794 497 EVGPVGNFD--FESILDLLDNMVTSRPPSQY-RIFVFDDCDTLSPDSWSAISKVVDR---APRRVVFILVSS-SLD---A 566 (1152)
Q Consensus 497 EIdaas~~~--vdeIreLle~a~~~P~~a~~-kVVIIDEID~Ls~eaqnaLLklLEe---pp~~VifILaTN-~~d---k 566 (1152)
+.++..... ...+...+..+.. .+++ .++++||++.+..++.+.|..+.+- ......++++.- ... +
T Consensus 104 ~~~p~~~~~~~~e~~~~~L~al~~---~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr 180 (269)
T COG3267 104 ESQPKVNVNAVLEQIDRELAALVK---KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLR 180 (269)
T ss_pred ccCccchhHHHHHHHHHHHHHHHH---hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhc
Confidence 111111110 1122222222211 2444 7899999999999988877666543 333334444432 111 1
Q ss_pred --chHHHHccceE-EEecCCChhHHHHHHHHHHHHcCCC---CCHHHHHHHHHhcCCCHHHHHHHHHH
Q 036794 567 --LPHIIISRCQK-FFFPKMKDADIIYTLQWIASKEGIE---IDKDALKLIASRSDGSLRDAEMTLEQ 628 (1152)
Q Consensus 567 --L~~aL~SR~qv-I~F~~p~~~EI~eiL~~iakkeGl~---Id~dALelLAe~s~GDLR~Ain~LEk 628 (1152)
....+..|+.+ |..+|++.++...+|++.++..+.. ++++++..+...+.|-.+..-+...+
T Consensus 181 ~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 181 LPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred hHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 12247788887 9999999999999999999876654 78999999999999966655444444
No 260
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.04 E-value=0.00012 Score=90.82 Aligned_cols=144 Identities=17% Similarity=0.199 Sum_probs=88.9
Q ss_pred cCcccCcHHHHHHHHHHHHhCCC-----------CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKV-----------GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri-----------~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
+-.|.|++.++..|.-++-.|-. .-++||.|.|||||+.+.+.+++.+-...... +.........
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vyts----gkgss~~GLT 360 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTS----GKGSSAAGLT 360 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEc----cccccccCce
Confidence 45788999999888877655311 13699999999999999999987754332111 1111111111
Q ss_pred CCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-------------CCCCE
Q 036794 489 RGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-------------APRRV 555 (1152)
Q Consensus 489 ~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-------------pp~~V 555 (1152)
..... ++. ++ + -.++. ..-..++++|+.|||+|+|......+|...||. .+..+
T Consensus 361 Aav~r-----d~~--tg-e---~~Lea--GALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARc 427 (682)
T COG1241 361 AAVVR-----DKV--TG-E---WVLEA--GALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARC 427 (682)
T ss_pred eEEEE-----ccC--CC-e---EEEeC--CEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhh
Confidence 10000 000 00 0 00000 001126779999999999999999999999998 23455
Q ss_pred EEEEEcCCCC-------------cchHHHHccceEEEe
Q 036794 556 VFILVSSSLD-------------ALPHIIISRCQKFFF 580 (1152)
Q Consensus 556 ifILaTN~~d-------------kL~~aL~SR~qvI~F 580 (1152)
-+++|+|-.. .++++|+||+..|.+
T Consensus 428 svLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifv 465 (682)
T COG1241 428 SVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFV 465 (682)
T ss_pred hhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEE
Confidence 5666776321 388899999996543
No 261
>PRK06526 transposase; Provisional
Probab=98.01 E-value=3e-05 Score=86.35 Aligned_cols=101 Identities=18% Similarity=0.241 Sum_probs=56.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS 523 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a 523 (1152)
..++|+||+|||||++|.+|+.++...... + .+..+..+.. .+..... ...+...+..+ .
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~----v-~f~t~~~l~~-------~l~~~~~--~~~~~~~l~~l------~ 158 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHR----V-LFATAAQWVA-------RLAAAHH--AGRLQAELVKL------G 158 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCc----h-hhhhHHHHHH-------HHHHHHh--cCcHHHHHHHh------c
Confidence 468999999999999999999876432110 0 0000000000 0000000 00111222222 3
Q ss_pred CceEEEEeCCCCCC--HHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 524 QYRIFVFDDCDTLS--PDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls--~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
+..+|||||++.+. ....+.|..+++....+..+|++||.+
T Consensus 159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred cCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 45799999999874 556677888887633334578888754
No 262
>PF05729 NACHT: NACHT domain
Probab=97.95 E-value=4.3e-05 Score=76.85 Aligned_cols=150 Identities=18% Similarity=0.213 Sum_probs=78.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCC-CCCCCCccccccCCCcc-ceEE-eCCCCCCCHHHHHHHHHHHhhCCC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPK-PCGFCNSCISHDRGKSR-NIKE-VGPVGNFDFESILDLLDNMVTSRP 521 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~e-pcg~c~~c~~i~~g~~~-dviE-Idaas~~~vdeIreLle~a~~~P~ 521 (1152)
.++|+|++|+|||++++.++..+......... ++.+...+......... .+.. +..........+...+..+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--- 78 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLE--- 78 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHH---
Confidence 58999999999999999999887655422210 11111111111110000 0000 000000000111111111111
Q ss_pred CCCceEEEEeCCCCCCHHHH--------HHHHHHHhh-CCCCEEEEEEcCCCCc-chHHHHccceEEEecCCChhHHHHH
Q 036794 522 PSQYRIFVFDDCDTLSPDSW--------SAISKVVDR-APRRVVFILVSSSLDA-LPHIIISRCQKFFFPKMKDADIIYT 591 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~eaq--------naLLklLEe-pp~~VifILaTN~~dk-L~~aL~SR~qvI~F~~p~~~EI~ei 591 (1152)
....-+||||.+|.+..... ..|..++.. .+.++.+|+++..... -..........+.+.+++.+++..+
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 24456899999999876332 244455555 4567777777754331 1222333335788999999999999
Q ss_pred HHHHHH
Q 036794 592 LQWIAS 597 (1152)
Q Consensus 592 L~~iak 597 (1152)
++..++
T Consensus 159 ~~~~f~ 164 (166)
T PF05729_consen 159 LRKYFS 164 (166)
T ss_pred HHHHhh
Confidence 987764
No 263
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.93 E-value=2.5e-05 Score=76.33 Aligned_cols=111 Identities=22% Similarity=0.369 Sum_probs=55.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCC-CCCCCCCccccccCCCccceE-----EeC--CCCCCCHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQP-KPCGFCNSCISHDRGKSRNIK-----EVG--PVGNFDFESILDLLDN 515 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~-epcg~c~~c~~i~~g~~~dvi-----EId--aas~~~vdeIreLle~ 515 (1152)
..++++||+|+|||++++.+++.+........ .++.+ ..|.... ...++. .+. .......+.+.+.+..
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIY-VNCPSSR--TPRDFAQEILEALGLPLKSRQTSDELRSLLID 81 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEE-EEHHHHS--SHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEE-EEeCCCC--CHHHHHHHHHHHhCccccccCCHHHHHHHHHH
Confidence 45899999999999999999998753210000 00000 0000000 000000 000 0011122332222222
Q ss_pred -HhhCCCCCCceEEEEeCCCCC-CHHHHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 516 -MVTSRPPSQYRIFVFDDCDTL-SPDSWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 516 -a~~~P~~a~~kVVIIDEID~L-s~eaqnaLLklLEepp~~VifILaTN~ 563 (1152)
+... ...+|+|||+|.+ ..+.++.|..+++ ..++.||++++.
T Consensus 82 ~l~~~----~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRR----RVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHC----TEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHhc----CCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 2211 1259999999999 8888888887777 466777776643
No 264
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.91 E-value=0.0013 Score=84.40 Aligned_cols=200 Identities=15% Similarity=0.144 Sum_probs=112.2
Q ss_pred CCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCC-----CCCCCCCCC-Cccccc---
Q 036794 417 PRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL-----EQPKPCGFC-NSCISH--- 487 (1152)
Q Consensus 417 P~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~-----e~~epcg~c-~~c~~i--- 487 (1152)
|..-.++|-.+.+.+.|. .....+.++++||+|+|||+++..++.....-.+ ..+.|-.++ ..|..+
T Consensus 10 p~~~~~~~~R~rl~~~l~----~~~~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~ 85 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLS----GANNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIAALQQA 85 (903)
T ss_pred CCCccccCcchHHHHHHh----cccCCCeEEEECCCCCCHHHHHHHHHHhCCCeEEEecCcccCCHHHHHHHHHHHHHHh
Confidence 444567777777766664 3344567899999999999999998764321000 000110000 000000
Q ss_pred cCCCccceEEeC-CCCCCCH-HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 488 DRGKSRNIKEVG-PVGNFDF-ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 488 ~~g~~~dviEId-aas~~~v-deIreLle~a~~~P~~a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN~~ 564 (1152)
..+.......+. ....... ..+..++..+.. ....-+||||++|.+.... ...|..++...+.++.+|+++...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 86 TNGHCSKSEALAQKRQYASLSSLFAQLFIELAD---WHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred cCcccchhhhhhccCCcCCHHHHHHHHHHHHhc---CCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 000000000000 0000111 122334443322 1445789999999997554 446666777778888888887653
Q ss_pred Ccch-HHHHccce--EEEec--CCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 036794 565 DALP-HIIISRCQ--KFFFP--KMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626 (1152)
Q Consensus 565 dkL~-~aL~SR~q--vI~F~--~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~L 626 (1152)
..++ ..+.-+.. .+... +++.+|...++... .|..++++.+..|.+.++|++.-+.-.+
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~---~~~~~~~~~~~~l~~~t~Gwp~~l~l~~ 226 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR---LSSPIEAAESSRLCDDVEGWATALQLIA 226 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCChHHHHHHHH
Confidence 2232 22332333 34333 78889988877543 4678999999999999999987654333
No 265
>PRK08181 transposase; Validated
Probab=97.89 E-value=8.4e-05 Score=83.49 Aligned_cols=100 Identities=12% Similarity=0.196 Sum_probs=58.6
Q ss_pred HHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCC-------CCHH
Q 036794 435 NAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGN-------FDFE 507 (1152)
Q Consensus 435 ~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~-------~~vd 507 (1152)
.++..+ ..++|+||+|||||++|.+++.++...... +..+....- ....
T Consensus 101 ~~~~~~---~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~---------------------v~f~~~~~L~~~l~~a~~~~ 156 (269)
T PRK08181 101 SWLAKG---ANLLLFGPPGGGKSHLAAAIGLALIENGWR---------------------VLFTRTTDLVQKLQVARREL 156 (269)
T ss_pred HHHhcC---ceEEEEecCCCcHHHHHHHHHHHHHHcCCc---------------------eeeeeHHHHHHHHHHHHhCC
Confidence 455533 358999999999999999999887532110 111110000 0000
Q ss_pred HHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 508 SILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 508 eIreLle~a~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
....++..+ ....+|||||++.+.. .....|+.+++......-+|++||.+
T Consensus 157 ~~~~~l~~l------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 157 QLESAIAKL------DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred cHHHHHHHH------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 111222222 3457999999998754 34567888887633334678888753
No 266
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.89 E-value=0.00081 Score=79.70 Aligned_cols=216 Identities=16% Similarity=0.200 Sum_probs=126.9
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHhCCC-----------CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKV-----------GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPC 478 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri-----------~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epc 478 (1152)
.+++|....---+|.|++++++.|.-.+-.|-. .-.++|.|.||+-|+.+.+.+.+-.-......+
T Consensus 331 d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTG--- 407 (721)
T KOG0482|consen 331 DFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTG--- 407 (721)
T ss_pred cHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecC---
Confidence 345555433345789999999999888866421 126899999999999999999776433221111
Q ss_pred CCCCccccccCCCccceEEeCCCCCCCHHHHHHHH-HHHh---hCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC---
Q 036794 479 GFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLL-DNMV---TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA--- 551 (1152)
Q Consensus 479 g~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLl-e~a~---~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep--- 551 (1152)
.|++ ++ .+.++ -+++-+ .++. ..-..++.+|-.|||+|+|....-.++-.+||..
T Consensus 408 ----------rGSS-GV-GLTAA------VmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTIS 469 (721)
T KOG0482|consen 408 ----------RGSS-GV-GLTAA------VMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTIS 469 (721)
T ss_pred ----------CCCC-cc-ccchh------hhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhh
Confidence 0000 00 00000 000000 0000 0011256789999999999988888888888872
Q ss_pred ----------CCCEEEEEEcCC------CC-------cchHHHHccceE-------------------------------
Q 036794 552 ----------PRRVVFILVSSS------LD-------ALPHIIISRCQK------------------------------- 577 (1152)
Q Consensus 552 ----------p~~VifILaTN~------~d-------kL~~aL~SR~qv------------------------------- 577 (1152)
..++.++.++|- +. .||.+|+|||..
T Consensus 470 IaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~ 549 (721)
T KOG0482|consen 470 IAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPP 549 (721)
T ss_pred hhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCC
Confidence 245556666652 11 489999999762
Q ss_pred EEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHh--------------cCCCHHHHHHHHHHHHHh-----CCCCCH
Q 036794 578 FFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASR--------------SDGSLRDAEMTLEQLSLL-----GQRISV 638 (1152)
Q Consensus 578 I~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~--------------s~GDLR~Ain~LEkLsLl-----g~~IT~ 638 (1152)
..|.+++.+-+..+|. .|+...-.++++..++|... +--..|.++.+|.-...+ ...+..
T Consensus 550 ~~fepl~~~~mR~yI~-~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~ 628 (721)
T KOG0482|consen 550 LDFEPLDPNLMRRYIS-LAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEE 628 (721)
T ss_pred ccCCCCCHHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccch
Confidence 2355555555555553 34445555677776666544 123567777776543222 446788
Q ss_pred HHHHHHHhc
Q 036794 639 PLVQELVGL 647 (1152)
Q Consensus 639 EdV~elVg~ 647 (1152)
+||.+++..
T Consensus 629 ~DV~EALRL 637 (721)
T KOG0482|consen 629 DDVNEALRL 637 (721)
T ss_pred hhHHHHHHH
Confidence 888888753
No 267
>PRK06921 hypothetical protein; Provisional
Probab=97.87 E-value=5.9e-05 Score=84.53 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
...++|+||+|+|||++|.+|++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 457899999999999999999998753
No 268
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00021 Score=85.00 Aligned_cols=153 Identities=20% Similarity=0.301 Sum_probs=89.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCC------CCHHHHHHHHHHHhh
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGN------FDFESILDLLDNMVT 518 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~------~~vdeIreLle~a~~ 518 (1152)
.+||.||+|+|||++|-.+|.....++ +..+.+..- .....+...++.+..
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPF-----------------------vKiiSpe~miG~sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDFPF-----------------------VKIISPEDMIGLSESAKCAHIKKIFEDAYK 596 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCCCe-----------------------EEEeChHHccCccHHHHHHHHHHHHHHhhc
Confidence 699999999999999999988755442 222222221 234567778888766
Q ss_pred CCCCCCceEEEEeCCCCCC----------HHHHHHHHHHHhhCCC--CEEEEEEcCCCCcchHH--HHccce-EEEecCC
Q 036794 519 SRPPSQYRIFVFDDCDTLS----------PDSWSAISKVVDRAPR--RVVFILVSSSLDALPHI--IISRCQ-KFFFPKM 583 (1152)
Q Consensus 519 ~P~~a~~kVVIIDEID~Ls----------~eaqnaLLklLEepp~--~VifILaTN~~dkL~~a--L~SR~q-vI~F~~p 583 (1152)
.|. .||+||+++.|- .-...+|+-+|...|+ +-.||++|+....+... +..-+. .+.++.+
T Consensus 597 S~l----siivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 597 SPL----SIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred Ccc----eEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 665 799999998872 2345566666766443 46677777653322221 333333 4777777
Q ss_pred Ch-hHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-----CHHHHHHHHHHH
Q 036794 584 KD-ADIIYTLQWIASKEGIEIDKDALKLIASRSDG-----SLRDAEMTLEQL 629 (1152)
Q Consensus 584 ~~-~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-----DLR~Ain~LEkL 629 (1152)
+. +++.+.|. ..++ +.++..+.++..--+ .+..++.++|.+
T Consensus 673 ~~~~~~~~vl~----~~n~-fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a 719 (744)
T KOG0741|consen 673 TTGEQLLEVLE----ELNI-FSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMA 719 (744)
T ss_pred CchHHHHHHHH----HccC-CCcchhHHHHHHHhccccchhHHHHHHHHHHH
Confidence 65 55555443 2232 445555554444211 244455555443
No 269
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.84 E-value=0.001 Score=73.39 Aligned_cols=139 Identities=22% Similarity=0.245 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHH
Q 036794 429 VAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFES 508 (1152)
Q Consensus 429 v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vde 508 (1152)
....|..++... ..-.++||.|||||++++.+|+.++.. ++.++-....+...
T Consensus 21 ~~~~l~~al~~~---~~~~~~GpagtGKtetik~La~~lG~~------------------------~~vfnc~~~~~~~~ 73 (231)
T PF12774_consen 21 CFLTLTQALSLN---LGGALSGPAGTGKTETIKDLARALGRF------------------------VVVFNCSEQMDYQS 73 (231)
T ss_dssp HHHHHHHHHCTT---TEEEEESSTTSSHHHHHHHHHHCTT--------------------------EEEEETTSSS-HHH
T ss_pred HHHHHHHHhccC---CCCCCcCCCCCCchhHHHHHHHHhCCe------------------------EEEecccccccHHH
Confidence 344555555432 334689999999999999999998865 33333334577788
Q ss_pred HHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh--------------------CCCCEEEEEEcC----CC
Q 036794 509 ILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR--------------------APRRVVFILVSS----SL 564 (1152)
Q Consensus 509 IreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe--------------------pp~~VifILaTN----~~ 564 (1152)
+..++..+... +..+.+||++.|+.+....+-+.+.. ..+++.+.++.| ..
T Consensus 74 l~ril~G~~~~-----GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr 148 (231)
T PF12774_consen 74 LSRILKGLAQS-----GAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGR 148 (231)
T ss_dssp HHHHHHHHHHH-----T-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC
T ss_pred HHHHHHHHhhc-----CchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCc
Confidence 88888876543 36899999999998876655444332 112333444444 12
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCC
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIE 602 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~ 602 (1152)
..+|+.|+.-+..+.+..|+...|.+.+ +-..|..
T Consensus 149 ~~LP~nLk~lFRpvam~~PD~~~I~ei~---L~s~GF~ 183 (231)
T PF12774_consen 149 SELPENLKALFRPVAMMVPDLSLIAEIL---LLSQGFK 183 (231)
T ss_dssp --S-HHHCTTEEEEE--S--HHHHHHHH---HHCCCTS
T ss_pred ccCCHhHHHHhheeEEeCCCHHHHHHHH---HHHcCch
Confidence 4699999999999999888877665543 4455653
No 270
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.83 E-value=6.6e-05 Score=84.40 Aligned_cols=133 Identities=16% Similarity=0.266 Sum_probs=77.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHH-------
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNM------- 516 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a------- 516 (1152)
..+||+||+|||||.+++.+-+.+.... + ....+.-........+..+++..
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~--------------------~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~ 92 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDK--------------------Y-LVITINFSAQTTSNQLQKIIESKLEKRRGR 92 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCC--------------------E-EEEEEES-TTHHHHHHHHCCCTTECECTTE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccc--------------------c-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC
Confidence 3589999999999999988765433210 0 01111111112223333333221
Q ss_pred hhCCCCCCceEEEEeCCCCCCHH------HHHHHHHHHhhC------------CCCEEEEEEcCCC---CcchHHHHccc
Q 036794 517 VTSRPPSQYRIFVFDDCDTLSPD------SWSAISKVVDRA------------PRRVVFILVSSSL---DALPHIIISRC 575 (1152)
Q Consensus 517 ~~~P~~a~~kVVIIDEID~Ls~e------aqnaLLklLEep------------p~~VifILaTN~~---dkL~~aL~SR~ 575 (1152)
.+.|..+++-|+||||+++-..+ ..+.|.++++.. -.++.||++++.. ..+++.+.+.+
T Consensus 93 ~~gP~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f 172 (272)
T PF12775_consen 93 VYGPPGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF 172 (272)
T ss_dssp EEEEESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE
T ss_pred CCCCCCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe
Confidence 12344566778999999887543 345666666651 1467788776632 24888999999
Q ss_pred eEEEecCCChhHHHHHHHHHHH
Q 036794 576 QKFFFPKMKDADIIYTLQWIAS 597 (1152)
Q Consensus 576 qvI~F~~p~~~EI~eiL~~iak 597 (1152)
.++.+..|+.+.+..+...++.
T Consensus 173 ~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 173 NILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp EEEE----TCCHHHHHHHHHHH
T ss_pred EEEEecCCChHHHHHHHHHHHh
Confidence 9999999999988887776665
No 271
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.82 E-value=0.00049 Score=83.47 Aligned_cols=142 Identities=17% Similarity=0.264 Sum_probs=87.6
Q ss_pred CcCcccCcHHHHHHHHHHHHhC-----------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 419 TFRDLVGQNLVAQALSNAVMRR-----------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~g-----------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
.|..|.|++.++.-|.-.+-.| +....+++.|.|||||+.+.++.+.-+..... -||........
T Consensus 343 l~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY----tsGkaSSaAGL 418 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY----TSGKASSAAGL 418 (764)
T ss_pred hCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE----ecCcccccccc
Confidence 3678889999998777666443 11236999999999999999998655432211 12221111111
Q ss_pred cCCCccceEEeCC-CCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-------------CCC
Q 036794 488 DRGKSRNIKEVGP-VGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-------------APR 553 (1152)
Q Consensus 488 ~~g~~~dviEIda-as~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-------------pp~ 553 (1152)
...+.. |. .+.+.++ . ..-+-++.+|--|||+|+|....+.+|+..||. .+.
T Consensus 419 ----TaaVvk-D~esgdf~iE-------A--GALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnA 484 (764)
T KOG0480|consen 419 ----TAAVVK-DEESGDFTIE-------A--GALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNA 484 (764)
T ss_pred ----eEEEEe-cCCCCceeee-------c--CcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecc
Confidence 100100 11 0111111 0 011236778999999999999889999999998 234
Q ss_pred CEEEEEEcCCCC-------------cchHHHHccceEE
Q 036794 554 RVVFILVSSSLD-------------ALPHIIISRCQKF 578 (1152)
Q Consensus 554 ~VifILaTN~~d-------------kL~~aL~SR~qvI 578 (1152)
++-+|+|+|-.. ++.++|+||+..|
T Consensus 485 RtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~ 522 (764)
T KOG0480|consen 485 RTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLF 522 (764)
T ss_pred hhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEE
Confidence 555777776321 3777899999853
No 272
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.81 E-value=0.00017 Score=83.17 Aligned_cols=111 Identities=21% Similarity=0.221 Sum_probs=65.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHH-----------HHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESI-----------LDL 512 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeI-----------reL 512 (1152)
..++|+||+|||||++|.++|+++..... .+..+....- ++.+ ...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~---------------------~V~y~t~~~l--~~~l~~~~~~~~~~~~~~ 240 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGK---------------------SVIYRTADEL--IEILREIRFNNDKELEEV 240 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCC---------------------eEEEEEHHHH--HHHHHHHHhccchhHHHH
Confidence 56899999999999999999998853311 1222211000 0001 111
Q ss_pred HHHHhhCCCCCCceEEEEeCCCCC--CHHHHHHHHHHHhhC-CCCEEEEEEcCCC-Cc----chHHHHccc----eEEEe
Q 036794 513 LDNMVTSRPPSQYRIFVFDDCDTL--SPDSWSAISKVVDRA-PRRVVFILVSSSL-DA----LPHIIISRC----QKFFF 580 (1152)
Q Consensus 513 le~a~~~P~~a~~kVVIIDEID~L--s~eaqnaLLklLEep-p~~VifILaTN~~-dk----L~~aL~SR~----qvI~F 580 (1152)
++.+ ....+|||||++.. +......|+.++++. ...-.+|++||.. .. +.+.+.+|+ ..+.|
T Consensus 241 ~~~l------~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~ 314 (329)
T PRK06835 241 YDLL------INCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRLLGNFTLLKF 314 (329)
T ss_pred HHHh------ccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEe
Confidence 2222 23479999999775 445567888888873 2234577888753 22 344566664 35666
Q ss_pred cCC
Q 036794 581 PKM 583 (1152)
Q Consensus 581 ~~p 583 (1152)
...
T Consensus 315 ~G~ 317 (329)
T PRK06835 315 YGE 317 (329)
T ss_pred cCc
Confidence 543
No 273
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.78 E-value=8.5e-05 Score=84.90 Aligned_cols=131 Identities=14% Similarity=0.161 Sum_probs=69.6
Q ss_pred hhCCCCcCcccC----cHHHHHHHHHHHHh---CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 414 KYMPRTFRDLVG----QNLVAQALSNAVMR---RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 414 KyRP~sFddLVG----Qe~v~q~Lk~aL~~---gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.+...+|+++.. +..+......++.. +....+++|+||+|||||++|.++|+++...... +.+
T Consensus 120 ~~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~----v~~------ 189 (306)
T PRK08939 120 DLLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVS----STL------ 189 (306)
T ss_pred hHhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCC----EEE------
Confidence 344567887763 23344444455553 2244679999999999999999999998532110 000
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHH--HHHHH-HHhhC-CCCEEEEEEcC
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSW--SAISK-VVDRA-PRRVVFILVSS 562 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaq--naLLk-lLEep-p~~VifILaTN 562 (1152)
+..... +.++.. .++-....+.++.+ ....||||||++......+ ..++. +++.- ......|++||
T Consensus 190 ~~~~~l--~~~lk~--~~~~~~~~~~l~~l------~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 190 LHFPEF--IRELKN--SISDGSVKEKIDAV------KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred EEHHHH--HHHHHH--HHhcCcHHHHHHHh------cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 000000 000000 00001122333333 3457999999987644433 23544 44542 35667788887
Q ss_pred CC
Q 036794 563 SL 564 (1152)
Q Consensus 563 ~~ 564 (1152)
-.
T Consensus 260 l~ 261 (306)
T PRK08939 260 FD 261 (306)
T ss_pred CC
Confidence 53
No 274
>PRK04132 replication factor C small subunit; Provisional
Probab=97.78 E-value=1.2e-05 Score=101.79 Aligned_cols=52 Identities=31% Similarity=0.527 Sum_probs=47.8
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHH
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSC 459 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtl 459 (1152)
...+|.+||||++|+||+||+.+++.|++++..++++|. ||+||||+||+.+
T Consensus 5 ~~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~-l~~g~~g~~~cl~ 56 (846)
T PRK04132 5 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHL-LFAGPPGVGKCLT 56 (846)
T ss_pred hcccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeE-EEECCCCCCcccc
Confidence 356999999999999999999999999999999999984 6999999999754
No 275
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.78 E-value=0.00025 Score=85.40 Aligned_cols=232 Identities=13% Similarity=0.204 Sum_probs=128.4
Q ss_pred cccCcHHHHHHHHHHHHhCCCC-----------cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCC
Q 036794 422 DLVGQNLVAQALSNAVMRRKVG-----------LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~gri~-----------~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g 490 (1152)
.|.|+..++..+.-++-.|-.. -.+||+|.|||||+.+.+.+++.........+ .-.+.+.+...
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTG----qGASavGLTa~ 525 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTG----QGASAVGLTAY 525 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEecc----CCccccceeEE
Confidence 4669999999998888664221 26999999999999999999886554321111 10111111110
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-------------CCCCEEE
Q 036794 491 KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-------------APRRVVF 557 (1152)
Q Consensus 491 ~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-------------pp~~Vif 557 (1152)
..-+|... .| .++. ..-..+.++|-+|||+|+|....-..+-..||. ....+.+
T Consensus 526 -----v~KdPvtr-EW-----TLEa--GALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctv 592 (854)
T KOG0477|consen 526 -----VRKDPVTR-EW-----TLEA--GALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTV 592 (854)
T ss_pred -----EeeCCccc-ee-----eecc--CeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhh
Confidence 00111100 00 0000 001126778999999999986654444444444 2356778
Q ss_pred EEEcCCCC-------------cchHHHHccceEEE-----ecCCChhHHHHHH-HHHHHH-------cCC----------
Q 036794 558 ILVSSSLD-------------ALPHIIISRCQKFF-----FPKMKDADIIYTL-QWIASK-------EGI---------- 601 (1152)
Q Consensus 558 ILaTN~~d-------------kL~~aL~SR~qvI~-----F~~p~~~EI~eiL-~~iakk-------eGl---------- 601 (1152)
|+++|-.. .+.++|+||+.++- +.+..++.+.+++ ..+.+. .++
T Consensus 593 IAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~ 672 (854)
T KOG0477|consen 593 IAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVE 672 (854)
T ss_pred heecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccc
Confidence 88887311 36677999988643 3333334444332 222221 112
Q ss_pred CCCHHHHHHHHHhcC---------CCHHHHHHH---HHHHHHhCC--CCCHHHHHHHHhccchhhHHHHHHHHHcCCHHH
Q 036794 602 EIDKDALKLIASRSD---------GSLRDAEMT---LEQLSLLGQ--RISVPLVQELVGLISDEKLVDLLDLALSADTVN 667 (1152)
Q Consensus 602 ~Id~dALelLAe~s~---------GDLR~Ain~---LEkLsLlg~--~IT~EdV~elVg~v~ee~ifdLldAils~d~~~ 667 (1152)
.++.++|..-+.++. +|...+.++ |.+-++..+ .||..+|+.++.......-..|-+.+...|...
T Consensus 673 ~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~ 752 (854)
T KOG0477|consen 673 PIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDM 752 (854)
T ss_pred cChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHH
Confidence 156666665555533 333333333 233233333 489999999988766666666666666666666
Q ss_pred HHH
Q 036794 668 TVK 670 (1152)
Q Consensus 668 ALk 670 (1152)
|+.
T Consensus 753 AI~ 755 (854)
T KOG0477|consen 753 AIR 755 (854)
T ss_pred HHH
Confidence 654
No 276
>PHA00729 NTP-binding motif containing protein
Probab=97.77 E-value=0.00013 Score=79.95 Aligned_cols=128 Identities=17% Similarity=0.253 Sum_probs=70.8
Q ss_pred HHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHH
Q 036794 435 NAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLD 514 (1152)
Q Consensus 435 ~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle 514 (1152)
+.+..+... .++|+|+||||||++|.+|++.++.......... .....+.. ... ++.+.+.+.+.
T Consensus 10 ~~l~~~~f~-nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~------~~~d~~~~--~~f------id~~~Ll~~L~ 74 (226)
T PHA00729 10 SAYNNNGFV-SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKD------DAWQYVQN--SYF------FELPDALEKIQ 74 (226)
T ss_pred HHHhcCCeE-EEEEECCCCCCHHHHHHHHHHHHHhhcccccchh------hHHhcCCc--EEE------EEHHHHHHHHH
Confidence 344445443 5899999999999999999998752211110000 00000111 111 23344444444
Q ss_pred HHhhCCCCCCceEEEEeCCCCCCHH-HHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHH
Q 036794 515 NMVTSRPPSQYRIFVFDDCDTLSPD-SWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQ 593 (1152)
Q Consensus 515 ~a~~~P~~a~~kVVIIDEID~Ls~e-aqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~ 593 (1152)
.+... .....++||||+..-... .+. .+ . + ...-.+.+.+++|+..+.|.+++++++...|+
T Consensus 75 ~a~~~--~~~~dlLIIDd~G~~~~~~~wh-----~~----~----~--~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr 137 (226)
T PHA00729 75 DAIDN--DYRIPLIIFDDAGIWLSKYVWY-----ED----Y----M--KTFYKIYALIRTRVSAVIFTTPSPEDLAFYLR 137 (226)
T ss_pred HHHhc--CCCCCEEEEeCCchhhcccchh-----hh----c----c--chHHHHHHHHHhhCcEEEEecCCHHHHHHHHH
Confidence 33211 123468999997542211 111 00 0 0 11123777889999999999999998888776
Q ss_pred H
Q 036794 594 W 594 (1152)
Q Consensus 594 ~ 594 (1152)
.
T Consensus 138 ~ 138 (226)
T PHA00729 138 E 138 (226)
T ss_pred h
Confidence 4
No 277
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.75 E-value=3.7e-05 Score=79.18 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=33.5
Q ss_pred cccCcHHHHHHHHHHH--HhCCCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 422 DLVGQNLVAQALSNAV--MRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL--~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|.+..++.|...+ .....++.++|+|++|+|||++++.+...+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3689999999999988 344555789999999999999999988876544
No 278
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.74 E-value=0.0017 Score=77.07 Aligned_cols=152 Identities=14% Similarity=0.248 Sum_probs=85.2
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCC-----------CcEEEEEcCCCchHHHHHHHHHHHHcccCCCC
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKV-----------GLLYVFYGPHGTGKTSCARIFARALNCQSLEQ 474 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri-----------~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~ 474 (1152)
..|..+.....| .|.|++++++++.-.+-.|.. .-.+||.|.|||-|+.+.+.+-+-..-.....
T Consensus 320 d~Ye~is~sIAP----SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTS 395 (729)
T KOG0481|consen 320 DVYERISKSIAP----SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTS 395 (729)
T ss_pred cHHHHHhhccCc----hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEec
Confidence 345555555655 466999999988877655321 12699999999999999998855321111000
Q ss_pred CCCCCCCCccccccCCCccceEEeCCCC-CCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh---
Q 036794 475 PKPCGFCNSCISHDRGKSRNIKEVGPVG-NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR--- 550 (1152)
Q Consensus 475 ~epcg~c~~c~~i~~g~~~dviEIdaas-~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe--- 550 (1152)
|.-.+......+. .-|+.. .+-. +. ..-..++++||.|||+|+|-++.--++-..||.
T Consensus 396 ----GKGSSAAGLTASV-----~RD~~tReFyl-------EG--GAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTI 457 (729)
T KOG0481|consen 396 ----GKGSSAAGLTASV-----IRDPSTREFYL-------EG--GAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTI 457 (729)
T ss_pred ----CCCcccccceeeE-----EecCCcceEEE-------ec--ceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhH
Confidence 0000011110000 001100 0000 00 001126779999999999988877777777776
Q ss_pred ----------CCCCEEEEEEcCCC----C---------cchHHHHccceEEE
Q 036794 551 ----------APRRVVFILVSSSL----D---------ALPHIIISRCQKFF 579 (1152)
Q Consensus 551 ----------pp~~VifILaTN~~----d---------kL~~aL~SR~qvI~ 579 (1152)
...++-+++++|.+ + .+.++|+||+..|.
T Consensus 458 SIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIF 509 (729)
T KOG0481|consen 458 SIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIF 509 (729)
T ss_pred HHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEE
Confidence 22344455666521 1 37789999998543
No 279
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.70 E-value=0.0014 Score=87.00 Aligned_cols=193 Identities=17% Similarity=0.120 Sum_probs=101.4
Q ss_pred CCcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceE
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIK 496 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dvi 496 (1152)
..|+++||.+..++.|..++.. ......+-|+|+.|+||||+|++++..+...+.. .|......... .....
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g---~vfv~~~~v~~----~~~~~ 253 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQS---SVFIDRAFISK----SMEIY 253 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCe---EEEeecccccc----chhhc
Confidence 4688999999888888887753 2334578999999999999999998877543210 00000000000 00000
Q ss_pred E-eCCCCCC-CHHHHHHHHHHHh-------------hCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEc
Q 036794 497 E-VGPVGNF-DFESILDLLDNMV-------------TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVS 561 (1152)
Q Consensus 497 E-Idaas~~-~vdeIreLle~a~-------------~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaT 561 (1152)
. .+..... ...-..+++..+. ..-...++-+||||+++. ...++.|....+.......+|++|
T Consensus 254 ~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTT 331 (1153)
T PLN03210 254 SSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVIT 331 (1153)
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEe
Confidence 0 0000000 0000001111100 000123456888999875 334555554444334566788888
Q ss_pred CCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHH
Q 036794 562 SSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEID--KDALKLIASRSDGSLRD 621 (1152)
Q Consensus 562 N~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id--~dALelLAe~s~GDLR~ 621 (1152)
.+.+.+... .-..++.+..++.++..+++...+-.....-+ .+....++.+++|-+-.
T Consensus 332 rd~~vl~~~--~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLA 391 (1153)
T PLN03210 332 KDKHFLRAH--GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLG 391 (1153)
T ss_pred CcHHHHHhc--CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHH
Confidence 765532210 01236788888888888777776643322111 13455567777775543
No 280
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.70 E-value=0.0012 Score=78.27 Aligned_cols=114 Identities=17% Similarity=0.242 Sum_probs=66.7
Q ss_pred hhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCcc
Q 036794 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSR 493 (1152)
Q Consensus 414 KyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~ 493 (1152)
-|.|..|++ ...+..|...+.--..+..+++.||+|||||++|.+++....|...
T Consensus 184 G~~P~~~~~----r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG--------------------- 238 (449)
T TIGR02688 184 GYEPEGFEA----RQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG--------------------- 238 (449)
T ss_pred CCCcccCCh----HHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---------------------
Confidence 477777752 3333444433222222345899999999999999999877433210
Q ss_pred ceEEeCCCCCCCHHHHHHHHHHHh--hCCCCCCceEEEEeCCCCCCH----HHHHHHHHHHhh---------CCCCEEEE
Q 036794 494 NIKEVGPVGNFDFESILDLLDNMV--TSRPPSQYRIFVFDDCDTLSP----DSWSAISKVVDR---------APRRVVFI 558 (1152)
Q Consensus 494 dviEIdaas~~~vdeIreLle~a~--~~P~~a~~kVVIIDEID~Ls~----eaqnaLLklLEe---------pp~~VifI 558 (1152)
...... .++.++. .....+.+.+|+|||+..++. +....|..+|+. ...+.-++
T Consensus 239 --------~f~T~a---~Lf~~L~~~~lg~v~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~v 307 (449)
T TIGR02688 239 --------GTITVA---KLFYNISTRQIGLVGRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFV 307 (449)
T ss_pred --------CcCcHH---HHHHHHHHHHHhhhccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEE
Confidence 001111 1222211 112236779999999999643 356778888886 23466677
Q ss_pred EEcCC
Q 036794 559 LVSSS 563 (1152)
Q Consensus 559 LaTN~ 563 (1152)
|..|-
T Consensus 308 fvGNi 312 (449)
T TIGR02688 308 FLGNV 312 (449)
T ss_pred EEccc
Confidence 77663
No 281
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.70 E-value=0.00059 Score=71.05 Aligned_cols=147 Identities=17% Similarity=0.225 Sum_probs=73.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCC-CCcc-----------ccccCCCccceEEeCCC----C--CCC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF-CNSC-----------ISHDRGKSRNIKEVGPV----G--NFD 505 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~-c~~c-----------~~i~~g~~~dviEIdaa----s--~~~ 505 (1152)
.-++++|+||+||||++.-++..|....... +|+ |... ..+..|...-+-..+.. + ...
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv---gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~ 82 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKV---GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN 82 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCcee---eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence 3478999999999999999998886542111 111 1111 11111111111111110 0 022
Q ss_pred HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC---HHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecC
Q 036794 506 FESILDLLDNMVTSRPPSQYRIFVFDDCDTLS---PDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPK 582 (1152)
Q Consensus 506 vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls---~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~ 582 (1152)
++.+.++...+....+ ....||||||++.|- .....++-.+|....+ +++.+--+.-+.+...++++..++-|
T Consensus 83 v~~le~i~~~al~rA~-~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp-liatlHrrsr~P~v~~ik~~~~v~v~-- 158 (179)
T COG1618 83 VEGLEEIAIPALRRAL-EEADVIIIDEIGPMELKSKKFREAVEEVLKSGKP-LIATLHRRSRHPLVQRIKKLGGVYVF-- 158 (179)
T ss_pred HHHHHHHhHHHHHHHh-hcCCEEEEecccchhhccHHHHHHHHHHhcCCCc-EEEEEecccCChHHHHhhhcCCEEEE--
Confidence 3333333222211111 124799999999874 3334455555554322 33333323445566678888887776
Q ss_pred CChhHHHHHHHHHHH
Q 036794 583 MKDADIIYTLQWIAS 597 (1152)
Q Consensus 583 p~~~EI~eiL~~iak 597 (1152)
+++...-.++.+++.
T Consensus 159 lt~~NR~~i~~~Il~ 173 (179)
T COG1618 159 LTPENRNRILNEILS 173 (179)
T ss_pred EccchhhHHHHHHHH
Confidence 555544445544443
No 282
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.65 E-value=0.00014 Score=93.77 Aligned_cols=142 Identities=17% Similarity=0.251 Sum_probs=91.4
Q ss_pred HHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEe---CC----CCCCC
Q 036794 433 LSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV---GP----VGNFD 505 (1152)
Q Consensus 433 Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEI---da----as~~~ 505 (1152)
|...++.-....++||-|.||+|||+++.++|+..+.. |..++.+...++..+ +. .+.+.
T Consensus 1533 l~rVlRAmqv~kpilLEGsPGVGKTSlItaLAr~tG~k-------------liRINLSeQTdL~DLfGsd~Pve~~Gef~ 1599 (4600)
T COG5271 1533 LRRVLRAMQVGKPILLEGSPGVGKTSLITALARKTGKK-------------LIRINLSEQTDLCDLFGSDLPVEEGGEFR 1599 (4600)
T ss_pred HHHHHHHHhcCCceeecCCCCccHHHHHHHHHHHhcCc-------------eEEeeccccchHHHHhCCCCCcccCceeE
Confidence 34444444555678999999999999999999998754 233333332222211 11 11122
Q ss_pred HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh------C--------CCCEEEEEEcCCCC------
Q 036794 506 FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR------A--------PRRVVFILVSSSLD------ 565 (1152)
Q Consensus 506 vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe------p--------p~~VifILaTN~~d------ 565 (1152)
|.+. .++..+ .++.-|++||+...+..+.+.|-..|+. | .++. .|||+-+|.
T Consensus 1600 w~da-pfL~am------r~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~Hpnf-rVFAaqNPq~qggGR 1671 (4600)
T COG5271 1600 WMDA-PFLHAM------RDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNF-RVFAAQNPQDQGGGR 1671 (4600)
T ss_pred eccc-HHHHHh------hcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCe-eeeeecCchhcCCCc
Confidence 2111 122222 4568999999998888888888777775 1 1233 355554442
Q ss_pred -cchHHHHccceEEEecCCChhHHHHHHHHH
Q 036794 566 -ALPHIIISRCQKFFFPKMKDADIIYTLQWI 595 (1152)
Q Consensus 566 -kL~~aL~SR~qvI~F~~p~~~EI~eiL~~i 595 (1152)
-||..+..|+.++....++.+++..++...
T Consensus 1672 KgLPkSF~nRFsvV~~d~lt~dDi~~Ia~~~ 1702 (4600)
T COG5271 1672 KGLPKSFLNRFSVVKMDGLTTDDITHIANKM 1702 (4600)
T ss_pred ccCCHHHhhhhheEEecccccchHHHHHHhh
Confidence 499999999999999999999987766543
No 283
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.64 E-value=0.0003 Score=78.45 Aligned_cols=27 Identities=37% Similarity=0.452 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
....++|+||+|||||++|-+|++++.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 344689999999999999999999987
No 284
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.61 E-value=0.00011 Score=76.94 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=37.7
Q ss_pred CceEEEEeCCCCC---CHHHHHHHHHHHhhCCCCEEEEEEcCC--CCcchHHHHcc--ceEEEecCCChhHHHH
Q 036794 524 QYRIFVFDDCDTL---SPDSWSAISKVVDRAPRRVVFILVSSS--LDALPHIIISR--CQKFFFPKMKDADIIY 590 (1152)
Q Consensus 524 ~~kVVIIDEID~L---s~eaqnaLLklLEepp~~VifILaTN~--~dkL~~aL~SR--~qvI~F~~p~~~EI~e 590 (1152)
...+++|||++.| .....+++.++|+. +.. +|++-.. ...+.+.+.+| +.++.+.+-..+.+..
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~s-~~~--vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l~~ 165 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLDS-NKP--VIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDALPE 165 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHCT-TSE--EEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCCHHH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHcC-CCc--EEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhhHhh
Confidence 4579999999987 45567788999983 223 4444332 34578889988 7778777666555543
No 285
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.59 E-value=2.9e-05 Score=89.44 Aligned_cols=150 Identities=18% Similarity=0.249 Sum_probs=76.0
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCC-----------CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCC
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRK-----------VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQP 475 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gr-----------i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~ 475 (1152)
.+..+.+-..| .|.|++.++..+.-.+-.+. ..-.+||.|.|||||+.+.+.+++........
T Consensus 14 ~~~~l~~s~aP----~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~-- 87 (331)
T PF00493_consen 14 IFDRLANSIAP----SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYT-- 87 (331)
T ss_dssp HHHCCHHHCSS----TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEE--
T ss_pred HHHHHHHHhCC----cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEEE--
Confidence 34455555554 57788888777654443321 12269999999999999998775432211100
Q ss_pred CCCCCCCccccccCCCccceEEeCCC-CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh----
Q 036794 476 KPCGFCNSCISHDRGKSRNIKEVGPV-GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR---- 550 (1152)
Q Consensus 476 epcg~c~~c~~i~~g~~~dviEIdaa-s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe---- 550 (1152)
+|.-..-..+.. ...-++. +...++. ..+ ..++++|++|||+|.+..+....|+.+||.
T Consensus 88 --~g~~~s~~gLta-----~~~~d~~~~~~~lea-Gal--------vlad~GiccIDe~dk~~~~~~~~l~eaMEqq~is 151 (331)
T PF00493_consen 88 --SGKGSSAAGLTA-----SVSRDPVTGEWVLEA-GAL--------VLADGGICCIDEFDKMKEDDRDALHEAMEQQTIS 151 (331)
T ss_dssp --ECCGSTCCCCCE-----EECCCGGTSSECEEE--HH--------HHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEE
T ss_pred --CCCCcccCCccc-----eeccccccceeEEeC-Cch--------hcccCceeeecccccccchHHHHHHHHHHcCeec
Confidence 000000000000 0000000 0000000 001 015679999999999999999999999998
Q ss_pred ---------CCCCEEEEEEcCCCC-------------cchHHHHccceEE
Q 036794 551 ---------APRRVVFILVSSSLD-------------ALPHIIISRCQKF 578 (1152)
Q Consensus 551 ---------pp~~VifILaTN~~d-------------kL~~aL~SR~qvI 578 (1152)
.+.++-|++++|-.. .++++|++||..|
T Consensus 152 i~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLi 201 (331)
T PF00493_consen 152 IAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLI 201 (331)
T ss_dssp ECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEE
T ss_pred cchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEE
Confidence 245667888876321 3777899999854
No 286
>PHA02774 E1; Provisional
Probab=97.58 E-value=0.00047 Score=83.99 Aligned_cols=138 Identities=20% Similarity=0.208 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHH
Q 036794 429 VAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFES 508 (1152)
Q Consensus 429 v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vde 508 (1152)
....|+.+++......+++|+||||||||++|.+|++.++... +..++..+.+-+
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~v-----------------------i~fvN~~s~FwL-- 474 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKV-----------------------ISFVNSKSHFWL-- 474 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCE-----------------------EEEEECcccccc--
Confidence 4455666665433335899999999999999999999986321 111111111111
Q ss_pred HHHHHHHHhhCCCCCCceEEEEeCCCCCC-HHHHHHHHHHHhhCC-------------CCEEEEEEcCCC---CcchHHH
Q 036794 509 ILDLLDNMVTSRPPSQYRIFVFDDCDTLS-PDSWSAISKVVDRAP-------------RRVVFILVSSSL---DALPHII 571 (1152)
Q Consensus 509 IreLle~a~~~P~~a~~kVVIIDEID~Ls-~eaqnaLLklLEepp-------------~~VifILaTN~~---dkL~~aL 571 (1152)
.|. ...++++|||+-.-. .-....|..+|+..+ ....+|++||-. +.-...|
T Consensus 475 ----------qpl-~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL 543 (613)
T PHA02774 475 ----------QPL-ADAKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYL 543 (613)
T ss_pred ----------chh-ccCCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHh
Confidence 111 344799999982221 122335666666532 123467777732 1234458
Q ss_pred HccceEEEecCC-------------ChhHHHHHHHHHHHHcCCC
Q 036794 572 ISRCQKFFFPKM-------------KDADIIYTLQWIASKEGIE 602 (1152)
Q Consensus 572 ~SR~qvI~F~~p-------------~~~EI~eiL~~iakkeGl~ 602 (1152)
.+|...|.|+.+ +......+.++...+..+.
T Consensus 544 ~sRi~~f~F~n~~P~d~~G~P~f~ltd~~WKsFF~rlw~~LdL~ 587 (613)
T PHA02774 544 HSRITVFEFPNPFPLDENGNPVFELTDANWKSFFERLWSQLDLS 587 (613)
T ss_pred hhhEEEEECCCCCCcCCCCCEeeeeCchhHHHHHHHHHHHcCCC
Confidence 899999988754 3345566666666665543
No 287
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.56 E-value=0.00013 Score=77.04 Aligned_cols=102 Identities=22% Similarity=0.236 Sum_probs=53.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCC
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP 521 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~ 521 (1152)
....++|+||+|||||++|.++++++..... ++.+ +....- +..+... ..-....+++..+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~----~v~f------~~~~~L--~~~l~~~--~~~~~~~~~~~~l~---- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGY----SVLF------ITASDL--LDELKQS--RSDGSYEELLKRLK---- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT------EEE------EEHHHH--HHHHHCC--HCCTTHCHHHHHHH----
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCc----ceeE------eecCce--ecccccc--ccccchhhhcCccc----
Confidence 3457999999999999999999998754211 0000 000000 0000000 00011122333332
Q ss_pred CCCceEEEEeCCCCCC--HHHHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 522 PSQYRIFVFDDCDTLS--PDSWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls--~eaqnaLLklLEepp~~VifILaTN~ 563 (1152)
+..++||||++... ....+.|..+++.--.+-..|++||.
T Consensus 108 --~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~ 149 (178)
T PF01695_consen 108 --RVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNL 149 (178)
T ss_dssp --TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS
T ss_pred --cccEecccccceeeecccccccchhhhhHhhcccCeEeeCCC
Confidence 33799999998764 44556777777762223357778874
No 288
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.54 E-value=0.00021 Score=69.09 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=46.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~ 525 (1152)
+.|+||+|+|||++|+.|++.+........ ...++...+... ..+. . ...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~----------------~~~vy~~~~~~~--------~w~g-----Y-~~q 50 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPT----------------KDSVYTRNPGDK--------FWDG-----Y-QGQ 50 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCC----------------CCcEEeCCCccc--------hhhc-----c-CCC
Confidence 479999999999999999998875421110 011222111111 1111 1 244
Q ss_pred eEEEEeCCCCCCHH----HHHHHHHHHhh
Q 036794 526 RIFVFDDCDTLSPD----SWSAISKVVDR 550 (1152)
Q Consensus 526 kVVIIDEID~Ls~e----aqnaLLklLEe 550 (1152)
.++++||+...... ....|++++..
T Consensus 51 ~vvi~DD~~~~~~~~~~~~~~~l~~l~s~ 79 (107)
T PF00910_consen 51 PVVIIDDFGQDNDGYNYSDESELIRLISS 79 (107)
T ss_pred cEEEEeecCccccccchHHHHHHHHHHhc
Confidence 79999999887754 56678887765
No 289
>PF14516 AAA_35: AAA-like domain
Probab=97.48 E-value=0.015 Score=67.36 Aligned_cols=209 Identities=14% Similarity=0.110 Sum_probs=110.2
Q ss_pred cCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCC-CCCCCC--------C-----CccccccC
Q 036794 424 VGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQ-PKPCGF--------C-----NSCISHDR 489 (1152)
Q Consensus 424 VGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~-~epcg~--------c-----~~c~~i~~ 489 (1152)
|....+-+.+.+.+... +..+.+.||+.+|||++...+.+.+....... ...|.. . ..|..+..
T Consensus 14 i~R~~~e~~~~~~i~~~--G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~ 91 (331)
T PF14516_consen 14 IERPPAEQECYQEIVQP--GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISR 91 (331)
T ss_pred cCchHHHHHHHHHHhcC--CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHH
Confidence 55666777777777652 23478999999999999999887765331100 000000 0 00101100
Q ss_pred CCccceEEeCC---CCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--HH----HHHHHHHHhh-----CCCCE
Q 036794 490 GKSRNIKEVGP---VGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--DS----WSAISKVVDR-----APRRV 555 (1152)
Q Consensus 490 g~~~dviEIda---as~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--ea----qnaLLklLEe-----pp~~V 555 (1152)
.-..+. .++. ............++..... ...++-|++|||+|.+.. .. +..|....++ .....
T Consensus 92 ~L~l~~-~l~~~w~~~~~~~~~~~~~~~~~ll~-~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L 169 (331)
T PF14516_consen 92 QLKLDE-KLDEYWDEEIGSKISCTEYFEEYLLK-QIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKL 169 (331)
T ss_pred HcCCCh-hHHHHHHHhcCChhhHHHHHHHHHHh-cCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceE
Confidence 000000 0000 0000111222333332111 114557899999998864 22 2222233332 12457
Q ss_pred EEEEEcCCCCcchHHH-H---ccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036794 556 VFILVSSSLDALPHII-I---SRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL 631 (1152)
Q Consensus 556 ifILaTN~~dkL~~aL-~---SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsL 631 (1152)
.||++......++..+ . .-+..+.++..+.+++...++ ..+..+++..++.|...++|..--....+..++.
T Consensus 170 ~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~----~~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 170 RLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQ----RYGLEFSQEQLEQLMDWTGGHPYLVQKACYLLVE 245 (331)
T ss_pred EEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHH----hhhccCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777764322122111 1 223357888889998876654 4577889999999999999988766555555543
Q ss_pred hCCCCCHHHHH
Q 036794 632 LGQRISVPLVQ 642 (1152)
Q Consensus 632 lg~~IT~EdV~ 642 (1152)
+.++.+++.
T Consensus 246 --~~~~~~~l~ 254 (331)
T PF14516_consen 246 --EQITLEQLL 254 (331)
T ss_pred --ccCcHHHHH
Confidence 356655443
No 290
>PRK04296 thymidine kinase; Provisional
Probab=97.45 E-value=0.0011 Score=70.70 Aligned_cols=111 Identities=14% Similarity=0.198 Sum_probs=55.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCC-CCCCCHHHHHHHHHHHhhCCCC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGP-VGNFDFESILDLLDNMVTSRPP 522 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIda-as~~~vdeIreLle~a~~~P~~ 522 (1152)
..+|++||+|+|||+++..++..+..... .+.+.........+...-...++- .....+....+++..+.. ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~----~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGM----KVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCC----eEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 46899999999999999888877633211 010000000000000000000000 000011122333333322 23
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
..+.+|+|||++.++.+....|++.+.. ..+.+|++.-
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~~--~g~~vi~tgl 114 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLDD--LGIPVICYGL 114 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHHH--cCCeEEEEec
Confidence 5678999999999987755667777665 3455555543
No 291
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.45 E-value=0.00028 Score=77.19 Aligned_cols=86 Identities=17% Similarity=0.284 Sum_probs=49.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhC
Q 036794 440 RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTS 519 (1152)
Q Consensus 440 gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~ 519 (1152)
.+.+..+||||+||+|||++|+.++........... ..........++..++.. ..++.+.+.+..+.
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~~~~~~~~d~~--------~~~l~g~~~~~v~~~d~~--~~~~~~~d~l~~~~-- 76 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPGKTLVLSFDMS--------SKVLIGDENVDIADHDDM--PPIQAMVEFYVMQN-- 76 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCCCCEEEecccc--------chhccCCCCCceeecCCC--CCHHHHHHHHHHHH--
Confidence 345677999999999999999998632111110000 001111112234444332 34666666665443
Q ss_pred CCCCCceEEEEeCCCCCC
Q 036794 520 RPPSQYRIFVFDDCDTLS 537 (1152)
Q Consensus 520 P~~a~~kVVIIDEID~Ls 537 (1152)
.....+.+||||.++.|.
T Consensus 77 ~~~~~ydtVVIDsI~~l~ 94 (220)
T TIGR01618 77 IQAVKYDNIVIDNISALQ 94 (220)
T ss_pred hccccCCEEEEecHHHHH
Confidence 234678999999998773
No 292
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.41 E-value=0.0077 Score=71.46 Aligned_cols=120 Identities=15% Similarity=0.229 Sum_probs=69.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ 524 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~ 524 (1152)
+++++||+++||||+++.+.+.+..... ++..+. .......+.+.+......... +
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~i----------------------y~~~~d-~~~~~~~l~d~~~~~~~~~~~-~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEII----------------------YINFDD-LRLDRIELLDLLRAYIELKER-E 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceE----------------------EEEecc-hhcchhhHHHHHHHHHHhhcc-C
Confidence 8999999999999999887766532100 000000 011112222333332211111 5
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC----CcchHHHHccceEEEecCCChhHHHHH
Q 036794 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL----DALPHIIISRCQKFFFPKMKDADIIYT 591 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~----dkL~~aL~SR~qvI~F~~p~~~EI~ei 591 (1152)
...+|||||+.+.. -+.+|..+.+..+. -|+++++.. ....+.+.-|...+.+.|++-.|....
T Consensus 95 ~~yifLDEIq~v~~-W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 95 KSYIFLDEIQNVPD-WERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CceEEEecccCchh-HHHHHHHHHccccc--eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 56899999998764 33344444444333 344444322 346667888988999999998887654
No 293
>PRK09183 transposase/IS protein; Provisional
Probab=97.37 E-value=0.0006 Score=76.17 Aligned_cols=95 Identities=18% Similarity=0.200 Sum_probs=53.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCC-CH------HHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNF-DF------ESILDLLDNM 516 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~-~v------deIreLle~a 516 (1152)
..++|+||+|+|||++|.+|+..+..... .+..+....-. .. ..+...+...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~---------------------~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~ 161 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGI---------------------KVRFTTAADLLLQLSTAQRQGRYKTTLQRG 161 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCC---------------------eEEEEeHHHHHHHHHHHHHCCcHHHHHHHH
Confidence 46889999999999999999877532210 01111100000 00 0111222221
Q ss_pred hhCCCCCCceEEEEeCCCCC--CHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 517 VTSRPPSQYRIFVFDDCDTL--SPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 517 ~~~P~~a~~kVVIIDEID~L--s~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
.....++||||++.+ .....+.|+.+++..-....+|++||.+
T Consensus 162 -----~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~ 206 (259)
T PRK09183 162 -----VMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLP 206 (259)
T ss_pred -----hcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCC
Confidence 133479999999985 4455567888886522223477788753
No 294
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.35 E-value=0.0094 Score=68.45 Aligned_cols=71 Identities=25% Similarity=0.399 Sum_probs=48.3
Q ss_pred eEEEEeCCCCCCHHH-HHHHHHHHhh---CCCCEEEEEEcCCCC---cchHHHHccce---EEEecCCChhHHHHHHHHH
Q 036794 526 RIFVFDDCDTLSPDS-WSAISKVVDR---APRRVVFILVSSSLD---ALPHIIISRCQ---KFFFPKMKDADIIYTLQWI 595 (1152)
Q Consensus 526 kVVIIDEID~Ls~ea-qnaLLklLEe---pp~~VifILaTN~~d---kL~~aL~SR~q---vI~F~~p~~~EI~eiL~~i 595 (1152)
.++|+||+|.+.... |..|..+++- ....+.+|..|+..+ .+-+.+.||+. ++-++..+..+.+++.+..
T Consensus 139 ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~l 218 (408)
T KOG2228|consen 139 VIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKL 218 (408)
T ss_pred EEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHH
Confidence 456678999876554 4444555543 456888999998776 45667888886 3445566677888777766
Q ss_pred H
Q 036794 596 A 596 (1152)
Q Consensus 596 a 596 (1152)
.
T Consensus 219 l 219 (408)
T KOG2228|consen 219 L 219 (408)
T ss_pred h
Confidence 4
No 295
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.34 E-value=0.0018 Score=75.15 Aligned_cols=213 Identities=15% Similarity=0.174 Sum_probs=114.4
Q ss_pred CcccCcHHHHHHHHHHHHhC--CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEe
Q 036794 421 RDLVGQNLVAQALSNAVMRR--KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV 498 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~g--ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEI 498 (1152)
..+.+.+..+..|...+-.. ..+..+.|||..|||||.+.+.+-+..+.++. +..|..|.........-+..+
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~v-----w~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENV-----WLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcce-----eeehHHhccHHHHHHHHHHHh
Confidence 35667888888888887553 35667899999999999999999998854432 233555554422111111111
Q ss_pred ---CCC---CCCCHHHHHHHHHHHhhCCC---CCCceEEEEeCCCCCCH---HHHHHHHHHHhhCC-CCEEEEEEcCCCC
Q 036794 499 ---GPV---GNFDFESILDLLDNMVTSRP---PSQYRIFVFDDCDTLSP---DSWSAISKVVDRAP-RRVVFILVSSSLD 565 (1152)
Q Consensus 499 ---daa---s~~~vdeIreLle~a~~~P~---~a~~kVVIIDEID~Ls~---eaqnaLLklLEepp-~~VifILaTN~~d 565 (1152)
+.. .....+.+.+.+..+...+. .+..-++|+|.+|.+.. ..++.|+++-+-.+ ..+.||++.....
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e 160 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCE 160 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccH
Confidence 000 01112334444433332121 13345678999998753 34444444433322 3666666665444
Q ss_pred cchHHHHcc--ceEEEecCCChhHHHHHHHHHHH-HcCCCCCHHHHHHHHHh---cCCCHHHHHHHHHHH-HHhCCCCCH
Q 036794 566 ALPHIIISR--CQKFFFPKMKDADIIYTLQWIAS-KEGIEIDKDALKLIASR---SDGSLRDAEMTLEQL-SLLGQRISV 638 (1152)
Q Consensus 566 kL~~aL~SR--~qvI~F~~p~~~EI~eiL~~iak-keGl~Id~dALelLAe~---s~GDLR~Ain~LEkL-sLlg~~IT~ 638 (1152)
+....=..- ...+.|+.++.+++..++..--- +...++=...+..+.+. .-+|+.++..++..+ -.+.++|+.
T Consensus 161 ~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~crd~~eL~~~~~~~wpky~epi~~ 240 (438)
T KOG2543|consen 161 KQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACRDVNELRSLISLAWPKYCEPITK 240 (438)
T ss_pred HHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcccccc
Confidence 322210111 22589999999999887753211 11111112223333332 225888888888875 344444443
No 296
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.33 E-value=0.00071 Score=72.43 Aligned_cols=95 Identities=18% Similarity=0.347 Sum_probs=53.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHH-------HH-
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLL-------DN- 515 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLl-------e~- 515 (1152)
..+++.||+|||||++++.+...+.... ..++.+.+. +.....+.+-. ..
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g---------------------~~v~~~apT-~~Aa~~L~~~~~~~a~Ti~~~ 76 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG---------------------KRVIGLAPT-NKAAKELREKTGIEAQTIHSF 76 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT-----------------------EEEEESS-HHHHHHHHHHHTS-EEEHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC---------------------CeEEEECCc-HHHHHHHHHhhCcchhhHHHH
Confidence 4678999999999999999988776431 012222211 11111111111 00
Q ss_pred HhhCC--------CCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 516 MVTSR--------PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 516 a~~~P--------~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
+...+ ....+.+|||||+.+++...+..|++.+... ++.+|++..
T Consensus 77 l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~--~~klilvGD 129 (196)
T PF13604_consen 77 LYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKKS--GAKLILVGD 129 (196)
T ss_dssp TTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-
T ss_pred HhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHhc--CCEEEEECC
Confidence 00001 1244579999999999999988888888773 455555553
No 297
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.29 E-value=0.002 Score=83.96 Aligned_cols=152 Identities=17% Similarity=0.209 Sum_probs=97.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ 524 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~ 524 (1152)
.+||.||+-+|||+++..+|+..+..+...+.- .-.+...+.+.+..+..+...+.+ .-+++.+ .+
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNH-------EHTdlqeYiGTyvTdd~G~lsFkE-GvLVeAl------R~ 955 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNH-------EHTDLQEYIGTYVTDDDGSLSFKE-GVLVEAL------RR 955 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCc-------ccchHHHHhhceeecCCCceeeeh-hHHHHHH------hc
Confidence 389999999999999999999987654332200 000011111112222222222211 1133433 23
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhh-------------CCCCEEEEEEcCCCC-------cchHHHHccceEEEecCCC
Q 036794 525 YRIFVFDDCDTLSPDSWSAISKVVDR-------------APRRVVFILVSSSLD-------ALPHIIISRCQKFFFPKMK 584 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~eaqnaLLklLEe-------------pp~~VifILaTN~~d-------kL~~aL~SR~qvI~F~~p~ 584 (1152)
+--|++||....+.++.++|-++|++ .|..-..+|||-+|. .|..+++.|+..++|..++
T Consensus 956 GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddip 1035 (4600)
T COG5271 956 GYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIP 1035 (4600)
T ss_pred CcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhcccCc
Confidence 46899999999999999999999987 122223456665543 3788999999999999999
Q ss_pred hhHHHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 036794 585 DADIIYTLQWIASKEGIEIDKDALKLIASRS 615 (1152)
Q Consensus 585 ~~EI~eiL~~iakkeGl~Id~dALelLAe~s 615 (1152)
.+++..+|... ..|.+.....+++-.
T Consensus 1036 edEle~ILh~r-----c~iapSyakKiVeVy 1061 (4600)
T COG5271 1036 EDELEEILHGR-----CEIAPSYAKKIVEVY 1061 (4600)
T ss_pred HHHHHHHHhcc-----CccCHHHHHHHHHHH
Confidence 99999988754 456666666655553
No 298
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.27 E-value=0.0004 Score=69.72 Aligned_cols=50 Identities=34% Similarity=0.486 Sum_probs=41.6
Q ss_pred CcccCcHHHHHHHHHHHHh------CCCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 421 RDLVGQNLVAQALSNAVMR------RKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..|.||..+++.+.++|.. .+.|.++.|+|++|||||.+++.||+.+...
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~ 80 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKS 80 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhc
Confidence 4689999888888888765 3445577899999999999999999998754
No 299
>PHA02624 large T antigen; Provisional
Probab=97.25 E-value=0.0012 Score=80.74 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=28.9
Q ss_pred HHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 433 LSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 433 Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++..+..-.....+||+||+|||||+++.+|++.++..
T Consensus 421 lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~ 458 (647)
T PHA02624 421 LKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGK 458 (647)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 33333333444689999999999999999999998543
No 300
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.22 E-value=0.0018 Score=64.49 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=21.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHc
Q 036794 446 YVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
++|+||+|+|||+++..++..+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998874
No 301
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.21 E-value=0.014 Score=66.08 Aligned_cols=43 Identities=23% Similarity=0.367 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhC--CCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 428 LVAQALSNAVMRR--KVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 428 ~v~q~Lk~aL~~g--ri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
...+.|.+.|... ..+.++-|+|+-|+|||++.+.+-+.+...
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4567778888776 567789999999999999999999888765
No 302
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.0032 Score=74.39 Aligned_cols=145 Identities=13% Similarity=0.207 Sum_probs=74.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCC-CCCCCCCccccccC-------CCccceEEeCCCCCCCHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQP-KPCGFCNSCISHDR-------GKSRNIKEVGPVGNFDFESILDLLD 514 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~-epcg~c~~c~~i~~-------g~~~dviEIdaas~~~vdeIreLle 514 (1152)
+..++|+||+|+||||++..+|..+.......+ ..+.....|..... +...++ .+ ......+.+...+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgv-pv--~~~~~~~~l~~~L~ 250 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGI-PV--KAIESFKDLKEEIT 250 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCc-ce--EeeCcHHHHHHHHH
Confidence 458999999999999999999987642210000 01111111111100 000000 00 00112344444443
Q ss_pred HHhhCCCCCCceEEEEeCCCCCCHHH--HHHHHHHHhhC--CCCEEEEEEcCCCC-cchHHHHccc-----eEEEecCCC
Q 036794 515 NMVTSRPPSQYRIFVFDDCDTLSPDS--WSAISKVVDRA--PRRVVFILVSSSLD-ALPHIIISRC-----QKFFFPKMK 584 (1152)
Q Consensus 515 ~a~~~P~~a~~kVVIIDEID~Ls~ea--qnaLLklLEep--p~~VifILaTN~~d-kL~~aL~SR~-----qvI~F~~p~ 584 (1152)
.. ..+.+||||+++.++.+. ...|.++++.. +..+++++.++.-. .+. .+..++ ..+-|.+++
T Consensus 251 ~~------~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~~~~~I~TKlD 323 (388)
T PRK12723 251 QS------KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFSYKTVIFTKLD 323 (388)
T ss_pred Hh------CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCCCCEEEEEecc
Confidence 32 457899999999987553 35666777652 34677777765433 233 333333 245666776
Q ss_pred hhHHHHHHHHHHH
Q 036794 585 DADIIYTLQWIAS 597 (1152)
Q Consensus 585 ~~EI~eiL~~iak 597 (1152)
...-.-.+-.++.
T Consensus 324 et~~~G~~l~~~~ 336 (388)
T PRK12723 324 ETTCVGNLISLIY 336 (388)
T ss_pred CCCcchHHHHHHH
Confidence 6544333333333
No 303
>PRK13695 putative NTPase; Provisional
Probab=96.96 E-value=0.01 Score=61.89 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=42.2
Q ss_pred CCceEEEEeCCCCC---CHHHHHHHHHHHhhCCCCEEEEEEcCCC--CcchHHHHcc--ceEEEecCCChhHHHHHHHH
Q 036794 523 SQYRIFVFDDCDTL---SPDSWSAISKVVDRAPRRVVFILVSSSL--DALPHIIISR--CQKFFFPKMKDADIIYTLQW 594 (1152)
Q Consensus 523 a~~kVVIIDEID~L---s~eaqnaLLklLEepp~~VifILaTN~~--dkL~~aL~SR--~qvI~F~~p~~~EI~eiL~~ 594 (1152)
....+|+|||+..+ .....+.|..+++. ...+|++++.. ..+.+.|..+ +.++.+.+-+.+++...+..
T Consensus 95 ~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~---~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~ 170 (174)
T PRK13695 95 EEADVIIIDEIGKMELKSPKFVKAVEEVLDS---EKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILN 170 (174)
T ss_pred CCCCEEEEECCCcchhhhHHHHHHHHHHHhC---CCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHH
Confidence 35689999997654 33345566666643 34666666653 2455566666 44677766666666655544
No 304
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.95 E-value=0.0013 Score=76.84 Aligned_cols=43 Identities=28% Similarity=0.397 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
|..+...+.+++.. ..+..+.++||.|||||++.++|...+..
T Consensus 6 Q~~~~~~v~~~~~~-~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 6 QRRVFDTVIEAIEN-EEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHHHc-cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 55677777777765 45567889999999999999999887754
No 305
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.90 E-value=0.005 Score=66.25 Aligned_cols=140 Identities=14% Similarity=0.188 Sum_probs=69.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC-------CCccceEEeCCCCCCC-HHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR-------GKSRNIKEVGPVGNFD-FESILDLLD 514 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~-------g~~~dviEIdaas~~~-vdeIreLle 514 (1152)
|..++|.||+|+||||++-.||..+..... ..+..|..+..+.. ....++-........+ .+.+.+.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~---~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGK---KVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccc---cceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 457899999999999999999887754311 11111111111100 0000010000000111 122233333
Q ss_pred HHhhCCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhh-CCCCEEEEEEcCCCCcchHHHH---cc--ceEEEecCCChh
Q 036794 515 NMVTSRPPSQYRIFVFDDCDTLSPD--SWSAISKVVDR-APRRVVFILVSSSLDALPHIII---SR--CQKFFFPKMKDA 586 (1152)
Q Consensus 515 ~a~~~P~~a~~kVVIIDEID~Ls~e--aqnaLLklLEe-pp~~VifILaTN~~dkL~~aL~---SR--~qvI~F~~p~~~ 586 (1152)
.+.. .++.+||||-++..+.+ ....|.++++. .+..+.|++.++.-..-...+. +. ...+-|.++++.
T Consensus 78 ~~~~----~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet 153 (196)
T PF00448_consen 78 KFRK----KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDET 153 (196)
T ss_dssp HHHH----TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSS
T ss_pred HHhh----cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCC
Confidence 3321 23479999999887644 34566666555 4667888888765432222222 22 234567777765
Q ss_pred HHH
Q 036794 587 DII 589 (1152)
Q Consensus 587 EI~ 589 (1152)
...
T Consensus 154 ~~~ 156 (196)
T PF00448_consen 154 ARL 156 (196)
T ss_dssp STT
T ss_pred CCc
Confidence 433
No 306
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.89 E-value=0.0012 Score=76.71 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=22.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.++++.|.||||||.+|-.+++.+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 368999999999999999999998
No 307
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.87 E-value=0.018 Score=68.39 Aligned_cols=149 Identities=11% Similarity=0.129 Sum_probs=86.2
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhh------CCCCEEEEEEcCCCC---cchHHHHcc-ceEEEecCCChhHHHHHHH
Q 036794 524 QYRIFVFDDCDTLSPDSWSAISKVVDR------APRRVVFILVSSSLD---ALPHIIISR-CQKFFFPKMKDADIIYTLQ 593 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~eaqnaLLklLEe------pp~~VifILaTN~~d---kL~~aL~SR-~qvI~F~~p~~~EI~eiL~ 593 (1152)
.+-||+||.+..-... .+.+.+.|-+ ...-..+||.|++.. .|.++|-.+ +..|.+...+++.-..++.
T Consensus 148 ~~PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 3679999998665433 3344444433 223445666776654 355555555 3458888888888888887
Q ss_pred HHHHHc-CC-------------------CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhH
Q 036794 594 WIASKE-GI-------------------EIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKL 653 (1152)
Q Consensus 594 ~iakke-Gl-------------------~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~i 653 (1152)
..+... .. ..+...++..+...+|-+.++.-+..++-. |.. -.+.|.+++.. ..
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks-Ge~-p~~Av~~iI~q----sa 300 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS-GES-PEEAVEEIISQ----SA 300 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc-CCC-HHHHHHHHHHH----HH
Confidence 777543 11 134556777778889999998888888754 321 12334444433 33
Q ss_pred HHHHHHHHc----------CCHHHHHHHHHHHHHhC
Q 036794 654 VDLLDLALS----------ADTVNTVKNLRVIMETG 679 (1152)
Q Consensus 654 fdLldAils----------~d~~~ALk~L~~LL~~G 679 (1152)
-++....+. ....+|..++..|-.++
T Consensus 301 ~eI~k~fl~~~~~~~~~~~Wt~~QaW~LIk~Ls~~~ 336 (431)
T PF10443_consen 301 SEIRKMFLLDDSDDAKSLKWTREQAWYLIKLLSKND 336 (431)
T ss_pred HHHHHHHhcCCCCcccCCCCCHHHHHHHHHHhccCC
Confidence 333333333 24455666666654443
No 308
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.82 E-value=0.022 Score=65.46 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=38.1
Q ss_pred EEEecCCChhHHHHHHHHHHHHcCC---CCCHHHHHHHHHhcCCCHHHHH
Q 036794 577 KFFFPKMKDADIIYTLQWIASKEGI---EIDKDALKLIASRSDGSLRDAE 623 (1152)
Q Consensus 577 vI~F~~p~~~EI~eiL~~iakkeGl---~Id~dALelLAe~s~GDLR~Ai 623 (1152)
.|.+++++.+|+...++......-+ ..++...+.+...++||++++.
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~ 307 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELE 307 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhc
Confidence 7899999999999999888765433 3566778888888899999875
No 309
>PRK10536 hypothetical protein; Provisional
Probab=96.82 E-value=0.013 Score=65.81 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=34.5
Q ss_pred cCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
|..+.+.......+..++... ..++++||.|||||++|.+++..
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~---~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESK---QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CccccCCCHHHHHHHHHHhcC---CeEEEECCCCCCHHHHHHHHHHH
Confidence 445666666666777777663 36899999999999999999885
No 310
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.022 Score=67.42 Aligned_cols=144 Identities=13% Similarity=0.123 Sum_probs=72.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc--------cccCCCccceEEeCCCCCCCHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI--------SHDRGKSRNIKEVGPVGNFDFESILDLLD 514 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~--------~i~~g~~~dviEIdaas~~~vdeIreLle 514 (1152)
+..++|.||.|+||||++..||..+........ ...+.... .+.......++. ..+...+.+.+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVg--lI~aDt~RiaAvEQLk~yae~lgipv~v-----~~d~~~L~~aL~ 313 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG--FITTDHSRIGTVQQLQDYVKTIGFEVIA-----VRDEAAMTRALT 313 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEE--EEecCCcchHHHHHHHHHhhhcCCcEEe-----cCCHHHHHHHHH
Confidence 357899999999999999999987753211100 00000000 000000000111 123344555554
Q ss_pred HHhhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhh-CCCCEEEEEEcCCC-CcchHHHHccce-----EEEecCCCh
Q 036794 515 NMVTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDR-APRRVVFILVSSSL-DALPHIIISRCQ-----KFFFPKMKD 585 (1152)
Q Consensus 515 ~a~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEe-pp~~VifILaTN~~-dkL~~aL~SR~q-----vI~F~~p~~ 585 (1152)
.+... .++.+||||-++.... .....|.++++. .|..++|++.++.- ..+. .+..++. .+-|.+++.
T Consensus 314 ~lk~~---~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~-~i~~~F~~~~idglI~TKLDE 389 (436)
T PRK11889 314 YFKEE---ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI-EIITNFKDIHIDGIVFTKFDE 389 (436)
T ss_pred HHHhc---cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHH-HHHHHhcCCCCCEEEEEcccC
Confidence 44211 2468999999988764 345677777765 33456666654322 2222 2333322 455666666
Q ss_pred hHHHHHHHHHHH
Q 036794 586 ADIIYTLQWIAS 597 (1152)
Q Consensus 586 ~EI~eiL~~iak 597 (1152)
....--+-.++.
T Consensus 390 T~k~G~iLni~~ 401 (436)
T PRK11889 390 TASSGELLKIPA 401 (436)
T ss_pred CCCccHHHHHHH
Confidence 543333333333
No 311
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=96.77 E-value=0.0081 Score=73.69 Aligned_cols=52 Identities=19% Similarity=0.373 Sum_probs=35.5
Q ss_pred HHHHHhhCCCCCCceEEEEeCCCC--CCHHHHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 512 LLDNMVTSRPPSQYRIFVFDDCDT--LSPDSWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 512 Lle~a~~~P~~a~~kVVIIDEID~--Ls~eaqnaLLklLEepp~~VifILaTN~ 563 (1152)
++.++...|...+|.||||||+|. ++.+..-.||+-+-....+..+|+.+..
T Consensus 151 LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSAT 204 (674)
T KOG0922|consen 151 LLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSAT 204 (674)
T ss_pred HHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeee
Confidence 566666778889999999999997 4556555555555544555555555443
No 312
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.72 E-value=0.0025 Score=65.71 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.+.+|++|.||||||+++..||...+..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~ 34 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLE 34 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCc
Confidence 3458999999999999999999887755
No 313
>PRK14974 cell division protein FtsY; Provisional
Probab=96.67 E-value=0.017 Score=67.14 Aligned_cols=27 Identities=37% Similarity=0.469 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|+||+|+||||++..+|..+..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~ 166 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKK 166 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999987653
No 314
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.67 E-value=0.0068 Score=76.97 Aligned_cols=105 Identities=18% Similarity=0.239 Sum_probs=55.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCcc-ceEEeCCCCCCCHHHHHHHHHHHhh----
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSR-NIKEVGPVGNFDFESILDLLDNMVT---- 518 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~-dviEIdaas~~~vdeIreLle~a~~---- 518 (1152)
..++++|+||||||++++++...+....... ++. .|. ..+... .+.+. .......+..++.....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~--~v~---l~A--pTg~AA~~L~e~---~g~~a~Tih~lL~~~~~~~~~ 408 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLL--PVG---LAA--PTGRAAKRLGEV---TGLTASTIHRLLGYGPDTFRH 408 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCc--eEE---EEe--CchHHHHHHHHh---cCCccccHHHHhhccCCccch
Confidence 3689999999999999999988765431000 000 000 000000 00000 00001112222211000
Q ss_pred --CCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEc
Q 036794 519 --SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVS 561 (1152)
Q Consensus 519 --~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaT 561 (1152)
........+|||||+.|+....+..|++.+. ..+.+|++.
T Consensus 409 ~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~~---~~~rlilvG 450 (720)
T TIGR01448 409 NHLEDPIDCDLLIVDESSMMDTWLALSLLAALP---DHARLLLVG 450 (720)
T ss_pred hhhhccccCCEEEEeccccCCHHHHHHHHHhCC---CCCEEEEEC
Confidence 0001346799999999999988888877653 456677765
No 315
>PTZ00202 tuzin; Provisional
Probab=96.66 E-value=0.032 Score=66.70 Aligned_cols=53 Identities=25% Similarity=0.305 Sum_probs=43.5
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHhC--CCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMRR--KVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~g--ri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.|....+++|.+.....|..++... ..+..++|+||+|+|||++++.+...+.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3555788999999999999888653 3345789999999999999999987654
No 316
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=96.65 E-value=0.028 Score=52.34 Aligned_cols=87 Identities=21% Similarity=0.257 Sum_probs=71.4
Q ss_pred cchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHHHHH
Q 036794 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLR 727 (1152)
Q Consensus 648 v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~kL~ 727 (1152)
+++..+-++++.+.+++..++...+++|+..|.++..|+..|...+.. . .++.....
T Consensus 3 p~~~~i~~i~~~~~~~~~~~~~~~~~~l~~~G~s~~~Il~~l~~~l~~----------------------~-~~~~~~k~ 59 (89)
T PF08542_consen 3 PPPEVIEEILESCLNGDFKEARKKLYELLVEGYSASDILKQLHEVLVE----------------------S-DIPDSQKA 59 (89)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--HHHHHHHHHHHHHT----------------------S-TSSHHHHH
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH----------------------h-hccHHHHH
Confidence 456778889999999999999999999999999999999999887652 1 44556677
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHc
Q 036794 728 QALKTLSEAEKQLRMSNDKLTWLTAALLQL 757 (1152)
Q Consensus 728 qaL~~L~eaD~qLK~s~dprl~LE~lLLkL 757 (1152)
+++..++++|..|..|.++.+.|+.++.++
T Consensus 60 ~i~~~la~~e~rl~~G~~e~lQl~alva~~ 89 (89)
T PF08542_consen 60 EILKILAEIEYRLSDGASEILQLEALVAAF 89 (89)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHCCCCHHHHHHHHHhhC
Confidence 889999999999999999999999998764
No 317
>PF13479 AAA_24: AAA domain
Probab=96.62 E-value=0.0036 Score=67.83 Aligned_cols=75 Identities=25% Similarity=0.461 Sum_probs=44.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCcc--ceEEeCCCCCCCHHHHHHHHHHHhhCCC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSR--NIKEVGPVGNFDFESILDLLDNMVTSRP 521 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~--dviEIdaas~~~vdeIreLle~a~~~P~ 521 (1152)
.-+|||||||+|||++|..+-+-+. .....|... .....+...-..++++.+.++.+...
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~~k~l~----------------id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~-- 65 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASLPKPLF----------------IDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEED-- 65 (213)
T ss_pred eEEEEECCCCCCHHHHHHhCCCeEE----------------EEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhc--
Confidence 4589999999999999998832221 111222100 00001111113678888877665333
Q ss_pred CCCceEEEEeCCCCC
Q 036794 522 PSQYRIFVFDDCDTL 536 (1152)
Q Consensus 522 ~a~~kVVIIDEID~L 536 (1152)
...+.+||||-++.+
T Consensus 66 ~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 66 EADYDTIVIDSISWL 80 (213)
T ss_pred cCCCCEEEEECHHHH
Confidence 367899999988765
No 318
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.61 E-value=0.038 Score=66.21 Aligned_cols=135 Identities=13% Similarity=0.171 Sum_probs=65.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc-ccCCCCCCCCCCCCcccccc----CCCccceEEeCCCCCCCHHHHHHHHHHHhh
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN-CQSLEQPKPCGFCNSCISHD----RGKSRNIKEVGPVGNFDFESILDLLDNMVT 518 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~-~~~~e~~epcg~c~~c~~i~----~g~~~dviEIdaas~~~vdeIreLle~a~~ 518 (1152)
..++|.||+|+||||++..||..+. ...... .+.......... ...+.....+........+++...+..+
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~--V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-- 297 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKK--VALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-- 297 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCe--EEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh--
Confidence 4789999999999999999987764 211000 000000000000 0000000000000011223344444433
Q ss_pred CCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhh--CCCCEEEEEEcCCCCcchHHHHccce-----EEEecCCChh
Q 036794 519 SRPPSQYRIFVFDDCDTLSPD--SWSAISKVVDR--APRRVVFILVSSSLDALPHIIISRCQ-----KFFFPKMKDA 586 (1152)
Q Consensus 519 ~P~~a~~kVVIIDEID~Ls~e--aqnaLLklLEe--pp~~VifILaTN~~dkL~~aL~SR~q-----vI~F~~p~~~ 586 (1152)
..+.+||||..+....+ ....|..+++. .+..+.+|+.++.-..-...+..++. .+-|..++..
T Consensus 298 ----~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKlDet 370 (424)
T PRK05703 298 ----RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLDET 370 (424)
T ss_pred ----CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEeccccc
Confidence 35689999999876543 44567777762 34566777776543322222333322 3445555554
No 319
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.60 E-value=0.0082 Score=74.48 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=28.1
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 524 QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
...+|||||+.|+.......|++.+ +..+.+|++..
T Consensus 259 ~~dvlIiDEaSMvd~~l~~~ll~al---~~~~rlIlvGD 294 (586)
T TIGR01447 259 PLDVLVVDEASMVDLPLMAKLLKAL---PPNTKLILLGD 294 (586)
T ss_pred cccEEEEcccccCCHHHHHHHHHhc---CCCCEEEEECC
Confidence 4579999999999998877777765 45677777754
No 320
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.60 E-value=0.011 Score=63.70 Aligned_cols=102 Identities=26% Similarity=0.304 Sum_probs=67.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCC
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP 522 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~ 522 (1152)
..+++|.|+.|+|||++.+.|........ +... .+-+....+...
T Consensus 52 d~~lvl~G~QG~GKStf~~~L~~~~~~d~-----------------------~~~~-----~~kd~~~~l~~~------- 96 (198)
T PF05272_consen 52 DTVLVLVGKQGIGKSTFFRKLGPEYFSDS-----------------------INDF-----DDKDFLEQLQGK------- 96 (198)
T ss_pred ceeeeEecCCcccHHHHHHHHhHHhccCc-----------------------cccC-----CCcHHHHHHHHh-------
Confidence 35789999999999999999965532211 0000 111222222222
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhh---------------CCCCEEEEEEcCCCCcchH-HHHccceEEEecC
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDR---------------APRRVVFILVSSSLDALPH-IIISRCQKFFFPK 582 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEe---------------pp~~VifILaTN~~dkL~~-aL~SR~qvI~F~~ 582 (1152)
-+|.|||++.+.....+.|..++-. .+...+||++||+.+-|.. +=-+|+-.|.+..
T Consensus 97 ---~iveldEl~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 97 ---WIVELDELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred ---HheeHHHHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 5889999999998888888877754 3467889999998774433 4456777777766
No 321
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.58 E-value=0.048 Score=63.55 Aligned_cols=49 Identities=27% Similarity=0.442 Sum_probs=39.3
Q ss_pred CcC-cccCcHHHHHHHHHHHHh-----CCCCcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 419 TFR-DLVGQNLVAQALSNAVMR-----RKVGLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 419 sFd-dLVGQe~v~q~Lk~aL~~-----gri~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.|+ ++.|.++.+..|.+.++. +.-...+||.||.|+|||++++.|.+.+
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 466 799999888777766654 2334589999999999999999998865
No 322
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.56 E-value=0.012 Score=75.13 Aligned_cols=101 Identities=17% Similarity=0.225 Sum_probs=57.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCC----------CCCHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVG----------NFDFESILDLL 513 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas----------~~~vdeIreLl 513 (1152)
..++|+|++|||||++++++...+...... +..+.+.+ ......+..++
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~---------------------V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~ 427 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYR---------------------VIGAALSGKAAEGLQAESGIESRTLASLE 427 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCe---------------------EEEEeCcHHHHHHHHhccCCceeeHHHHH
Confidence 367899999999999999998765432110 11111100 00011122222
Q ss_pred HHHh-hCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcch
Q 036794 514 DNMV-TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALP 568 (1152)
Q Consensus 514 e~a~-~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~ 568 (1152)
.... .........+|||||+.|+....+..|++..... ...+||+. +++.|+
T Consensus 428 ~~~~~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~~--~~kliLVG-D~~QLp 480 (744)
T TIGR02768 428 YAWANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEEA--GAKVVLVG-DPEQLQ 480 (744)
T ss_pred hhhccCcccCCCCcEEEEECcccCCHHHHHHHHHHHHhc--CCEEEEEC-ChHHcc
Confidence 1111 1122346789999999999998888888766653 44555554 333343
No 323
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.017 Score=68.04 Aligned_cols=25 Identities=32% Similarity=0.592 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..|+|.||+|+||||++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999875
No 324
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.51 E-value=0.0043 Score=72.70 Aligned_cols=127 Identities=15% Similarity=0.233 Sum_probs=68.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCC
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR 520 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P 520 (1152)
..+.+++|||+.|+|||.+.-.+...+....... ..+. .+....+..+.... ...+-+..+.+.+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R---~HFh----~Fm~~vh~~l~~~~----~~~~~l~~va~~l~--- 125 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRR---VHFH----EFMLDVHSRLHQLR----GQDDPLPQVADELA--- 125 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccc---cccc----HHHHHHHHHHHHHh----CCCccHHHHHHHHH---
Confidence 3456899999999999999999987765421100 0000 00000000011110 01112333333332
Q ss_pred CCCCceEEEEeCCCCCCHHHHHHHHHHHhh-CCCCEEEEEEcCCCC-c-------------chHHHHccceEEEecCC
Q 036794 521 PPSQYRIFVFDDCDTLSPDSWSAISKVVDR-APRRVVFILVSSSLD-A-------------LPHIIISRCQKFFFPKM 583 (1152)
Q Consensus 521 ~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-pp~~VifILaTN~~d-k-------------L~~aL~SR~qvI~F~~p 583 (1152)
....||.+||++--.....-.|-++++. ....+++|+++|.+. . ....|..+|.++.+...
T Consensus 126 --~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~ 201 (362)
T PF03969_consen 126 --KESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGG 201 (362)
T ss_pred --hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCC
Confidence 3457999999876543322223333333 236888888888532 1 23357889999888765
No 325
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.47 E-value=0.11 Score=60.61 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=25.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 440 RKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 440 gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
...+..+-|+|+||+||||++..+...+..
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345668999999999999999999888764
No 326
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.38 E-value=0.26 Score=59.42 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.+..++|+|++|+||||++..+|..+..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3568999999999999999999988754
No 327
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.35 E-value=0.013 Score=73.00 Aligned_cols=35 Identities=11% Similarity=0.298 Sum_probs=27.9
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
..+|||||+.|+.......|++.+ +.++.+|++..
T Consensus 266 ~dvlIvDEaSMvd~~lm~~ll~al---~~~~rlIlvGD 300 (615)
T PRK10875 266 LDVLVVDEASMVDLPMMARLIDAL---PPHARVIFLGD 300 (615)
T ss_pred CCeEEEChHhcccHHHHHHHHHhc---ccCCEEEEecc
Confidence 479999999999988888777765 45677777764
No 328
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.34 E-value=0.011 Score=76.87 Aligned_cols=104 Identities=16% Similarity=0.179 Sum_probs=55.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHh-hCCCCC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV-TSRPPS 523 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~-~~P~~a 523 (1152)
.++|+|.+|||||++.+++...+....... ..| +. .+... ..+..........|..++.... ......
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V-------~~~-Ap-TGkAA--~~L~e~tGi~a~TI~sll~~~~~~~~~l~ 432 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEV-------RGA-AL-SGIAA--ENLEGGSGIASRTIASLEHGWGQGRDLLT 432 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeE-------EEe-cC-cHHHH--HHHhhccCcchhhHHHHHhhhcccccccc
Confidence 568999999999999988876654221000 000 00 00000 0000000111122333322111 111234
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEc
Q 036794 524 QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVS 561 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaT 561 (1152)
...||||||+.|+....+..|++..+.. .+.+||+.
T Consensus 433 ~~~vlIVDEASMv~~~~m~~LL~~a~~~--garvVLVG 468 (988)
T PRK13889 433 SRDVLVIDEAGMVGTRQLERVLSHAADA--GAKVVLVG 468 (988)
T ss_pred cCcEEEEECcccCCHHHHHHHHHhhhhC--CCEEEEEC
Confidence 5679999999999999888888877764 44555554
No 329
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.023 Score=72.87 Aligned_cols=179 Identities=15% Similarity=0.169 Sum_probs=105.9
Q ss_pred cCcccCc-HHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEe
Q 036794 420 FRDLVGQ-NLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV 498 (1152)
Q Consensus 420 FddLVGQ-e~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEI 498 (1152)
++-++|. ++-++.+.+.+.+....+ -+|.|++|+|||.++.-+++.+.....+.. ..-..+..+..+. +
T Consensus 185 ldPvigr~deeirRvi~iL~Rrtk~N-PvLVG~~gvgktaiv~gla~ri~~G~vp~~---l~~~~l~~l~~g~------l 254 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRKTKNN-PVLVGEPGVGKTAIVEGLAQRIATGDVPET---LKDKKLIALDFGS------L 254 (898)
T ss_pred CCCccCCchHHHHHHHHHHhccCCCC-ceEEecCCCCchhHHHHHHHHhhcCCCCcc---ccccceEEEEhhh------c
Confidence 5678887 655555555555544433 478999999999999999998765543321 0011112222221 0
Q ss_pred CCCCCCCHHH----HHHHHHHHhhCCCCCCceEEEEeCCCCCCHH--------HHHHHHHHHhhCCCCEEEEEEcCCCC-
Q 036794 499 GPVGNFDFES----ILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD--------SWSAISKVVDRAPRRVVFILVSSSLD- 565 (1152)
Q Consensus 499 daas~~~vde----IreLle~a~~~P~~a~~kVVIIDEID~Ls~e--------aqnaLLklLEepp~~VifILaTN~~d- 565 (1152)
.++.....+ +.+++..+.. .+.+-|+||||+|.+... +.+.|...|.. ..+.+|.+|+.-.
T Consensus 255 -~aGa~~rge~E~rlk~l~k~v~~---~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~r--g~l~~IGatT~e~Y 328 (898)
T KOG1051|consen 255 -VAGAKRRGEFEERLKELLKEVES---GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLAR--GGLWCIGATTLETY 328 (898)
T ss_pred -ccCcccchHHHHHHHHHHHHHhc---CCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhc--CCeEEEecccHHHH
Confidence 112222233 4444444432 356678999999998433 23333333333 3389999887321
Q ss_pred ----cchHHHHccceEEEecCCChhHHHHHHHHHHHH----cCCCCCHHHHHHHHHh
Q 036794 566 ----ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK----EGIEIDKDALKLIASR 614 (1152)
Q Consensus 566 ----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk----eGl~Id~dALelLAe~ 614 (1152)
.-.|++-+|++.+.++.|+..+...+|...... .|..+.+.++...+..
T Consensus 329 ~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~ 385 (898)
T KOG1051|consen 329 RKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQL 385 (898)
T ss_pred HHHHhhCcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccch
Confidence 245679999999888889887766666655444 4556666665444433
No 330
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.23 E-value=0.011 Score=64.24 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAk 465 (1152)
..++|+||.|.|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5689999999999999999984
No 331
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.21 E-value=0.0056 Score=62.14 Aligned_cols=41 Identities=17% Similarity=0.348 Sum_probs=25.1
Q ss_pred CceEEEEeCCCCCCH-HHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 524 QYRIFVFDDCDTLSP-DSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~-eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
...+|||||+|.+.. .....+..++...+....+|+.|..+
T Consensus 129 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~ 170 (201)
T smart00487 129 NVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATP 170 (201)
T ss_pred HCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCC
Confidence 456999999999986 44444445555433444445555444
No 332
>PRK08118 topology modulation protein; Reviewed
Probab=96.21 E-value=0.098 Score=54.81 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=24.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
+++.||+|+||||+|+.|++.++...
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~~ 29 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPV 29 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 78999999999999999999998764
No 333
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.20 E-value=0.015 Score=62.66 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=21.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..++|+||.|+||||+.+.++..+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 578999999999999999998644
No 334
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.18 E-value=0.0043 Score=60.11 Aligned_cols=26 Identities=31% Similarity=0.588 Sum_probs=23.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.|+|+|+||+||||+|+.|++.+++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~ 26 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFP 26 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCe
Confidence 47899999999999999999998754
No 335
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.18 E-value=0.023 Score=74.54 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=55.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCC----------CCCHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVG----------NFDFESILDLL 513 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas----------~~~vdeIreLl 513 (1152)
...++.|++|||||++.+++...+...... ++-+.+.+ ......|..++
T Consensus 398 r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~---------------------V~g~ApTgkAA~~L~e~~Gi~a~TIas~l 456 (1102)
T PRK13826 398 RIAAVVGRAGAGKTTMMKAAREAWEAAGYR---------------------VVGGALAGKAAEGLEKEAGIQSRTLSSWE 456 (1102)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCe---------------------EEEEcCcHHHHHHHHHhhCCCeeeHHHHH
Confidence 467999999999999999998765432110 11111110 00111122211
Q ss_pred HHHh-hCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEE
Q 036794 514 DNMV-TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFIL 559 (1152)
Q Consensus 514 e~a~-~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifIL 559 (1152)
.... .........||||||+.|+.......|++.++.....++||.
T Consensus 457 l~~~~~~~~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~~~garvVLVG 503 (1102)
T PRK13826 457 LRWNQGRDQLDNKTVFVLDEAGMVASRQMALFVEAVTRAGAKLVLVG 503 (1102)
T ss_pred hhhccCccCCCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEEEC
Confidence 1110 011123467999999999999999999988876444444444
No 336
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.15 E-value=0.039 Score=65.86 Aligned_cols=150 Identities=11% Similarity=0.160 Sum_probs=70.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCC-ccceEEeCCCCCCCHHHHHHHHHHHhhCCC
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK-SRNIKEVGPVGNFDFESILDLLDNMVTSRP 521 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~-~~dviEIdaas~~~vdeIreLle~a~~~P~ 521 (1152)
+..++|.||+|+||||++..||..+....... .+............. ...+.+...........+.++.+.+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~--V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~---- 296 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKS--VSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA---- 296 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCe--EEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH----
Confidence 34689999999999999999997653211000 000000000000000 00000000000011222334444432
Q ss_pred CCCceEEEEeCCCCCC--HHHHHHHHHHHhh----CCCCEEEEEEcCCCCcchHHHHccce-----EEEecCCChhHHHH
Q 036794 522 PSQYRIFVFDDCDTLS--PDSWSAISKVVDR----APRRVVFILVSSSLDALPHIIISRCQ-----KFFFPKMKDADIIY 590 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls--~eaqnaLLklLEe----pp~~VifILaTN~~dkL~~aL~SR~q-----vI~F~~p~~~EI~e 590 (1152)
...+.+||||=++..+ ......|.+++.. .+..++||+.++.-..-...+..++. .+-|.+++...-.-
T Consensus 297 ~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~~~G 376 (432)
T PRK12724 297 RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLG 376 (432)
T ss_pred hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCCCcc
Confidence 1456899999877764 3445566666653 24567777776654322222333332 36667777654333
Q ss_pred HHHHHHHH
Q 036794 591 TLQWIASK 598 (1152)
Q Consensus 591 iL~~iakk 598 (1152)
-+-.++..
T Consensus 377 ~il~i~~~ 384 (432)
T PRK12724 377 SFLELADT 384 (432)
T ss_pred HHHHHHHH
Confidence 33333333
No 337
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.14 E-value=0.013 Score=72.24 Aligned_cols=119 Identities=16% Similarity=0.173 Sum_probs=68.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc--------cCCCccceEEe-CCCCCCCHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH--------DRGKSRNIKEV-GPVGNFDFESILDLL 513 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i--------~~g~~~dviEI-daas~~~vdeIreLl 513 (1152)
+.-+|+.||+|+|||++.|+||.---........| ..|..+ ..|.-++.+-. +.....+-+++.+++
T Consensus 419 G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P----~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL 494 (604)
T COG4178 419 GERLLITGESGAGKTSLLRALAGLWPWGSGRISMP----ADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVL 494 (604)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCccCCCceecC----CCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHH
Confidence 34689999999999999999987543332222222 111111 11111111111 111113334444443
Q ss_pred HHHhhCC----------------------------CCCCceEEEEeCCC-CCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 514 DNMVTSR----------------------------PPSQYRIFVFDDCD-TLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 514 e~a~~~P----------------------------~~a~~kVVIIDEID-~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
..+.... ...+++++||||+- .|.++....|++.|++.-+++.+|-++..+
T Consensus 495 ~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~ 574 (604)
T COG4178 495 HKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRP 574 (604)
T ss_pred HHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccch
Confidence 3321100 01357899999984 567888899999999966788888888765
Q ss_pred C
Q 036794 565 D 565 (1152)
Q Consensus 565 d 565 (1152)
.
T Consensus 575 t 575 (604)
T COG4178 575 T 575 (604)
T ss_pred h
Confidence 4
No 338
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.09 E-value=0.015 Score=55.33 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.++++||+|+|||+++-.++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 4789999999999999888887654
No 339
>PRK06762 hypothetical protein; Provisional
Probab=96.09 E-value=0.026 Score=58.08 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+|++|+||||+|+.|++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999987
No 340
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.06 E-value=0.032 Score=75.71 Aligned_cols=144 Identities=18% Similarity=0.305 Sum_probs=90.4
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEE------eCCCCCC
Q 036794 431 QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKE------VGPVGNF 504 (1152)
Q Consensus 431 q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviE------Idaas~~ 504 (1152)
..+..++..++.+ +||.||.|+|||+++.-+|++.+..... ++.-.+.++.+ .+..+..
T Consensus 430 a~~~~a~~~~~~p--illqG~tssGKtsii~~la~~~g~~~vr-------------innhehtd~qeyig~y~~~~~g~l 494 (1856)
T KOG1808|consen 430 ADLARAISSGKFP--ILLQGPTSSGKTSIIKELARATGKNIVR-------------INNHEHTDLQEYIGTYVADDNGDL 494 (1856)
T ss_pred HHHHHHHhcCCCC--eEEecCcCcCchhHHHHHHHHhccCcee-------------hhccccchHHHHHHhhhcCCCCCe
Confidence 3444555567666 8999999999999999999998765332 22222222211 1122222
Q ss_pred CHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-----CCCCEE--------EEEEcCCCC------
Q 036794 505 DFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-----APRRVV--------FILVSSSLD------ 565 (1152)
Q Consensus 505 ~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-----pp~~Vi--------fILaTN~~d------ 565 (1152)
.+... -++..+ -++..+|+||++..+.+.+++|.++++. .|.... .+++|-++.
T Consensus 495 ~freg-~LV~Al------r~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~gr 567 (1856)
T KOG1808|consen 495 VFREG-VLVQAL------RNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGR 567 (1856)
T ss_pred eeehh-HHHHHH------HhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchh
Confidence 22221 133333 2357999999999999999999999987 222222 234443332
Q ss_pred -cchHHHHccceEEEecCCChhHHHHHHHHHH
Q 036794 566 -ALPHIIISRCQKFFFPKMKDADIIYTLQWIA 596 (1152)
Q Consensus 566 -kL~~aL~SR~qvI~F~~p~~~EI~eiL~~ia 596 (1152)
.+..++.+|+..++|-.+.++++..++...+
T Consensus 568 k~lsRa~~~rf~e~~f~~~~e~e~~~i~~~~~ 599 (1856)
T KOG1808|consen 568 KILSRALRNRFIELHFDDIGEEELEEILEHRC 599 (1856)
T ss_pred hhhhhcccccchhhhhhhcCchhhhhhhcccc
Confidence 2555678888888888888887777665443
No 341
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.05 E-value=0.015 Score=62.94 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=23.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|+|+||+|||++|+.+|++|...
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHh
Confidence 57999999999999999999998755
No 342
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=96.05 E-value=0.019 Score=65.07 Aligned_cols=197 Identities=17% Similarity=0.135 Sum_probs=104.2
Q ss_pred CcCcccCcHHH---HHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccce
Q 036794 419 TFRDLVGQNLV---AQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNI 495 (1152)
Q Consensus 419 sFddLVGQe~v---~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dv 495 (1152)
.-.++++-..+ +..+.-+-+.|. ...+||-+|.|||..++-+++.-.........||.........
T Consensus 70 ~~~~~l~tkt~r~~~~~~~~A~k~g~---l~~vyg~~g~gKt~a~~~y~~s~p~~~l~~~~p~~~a~~~i~~-------- 138 (297)
T COG2842 70 LAPDFLETKTVRRIFFRTRPASKTGS---LVVVYGYAGLGKTQAAKNYAPSNPNALLIEADPSYTALVLILI-------- 138 (297)
T ss_pred ccccccccchhHhHhhhhhhhhhcCc---eEEEeccccchhHHHHHhhcccCccceeecCChhhHHHHHHHH--------
Confidence 34567776554 333444444444 5789999999999999999876433322222333321111000
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCC------CCcchH
Q 036794 496 KEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSS------LDALPH 569 (1152)
Q Consensus 496 iEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~------~dkL~~ 569 (1152)
.+.+ ........+.+.+......- ....++|++||++.|+..+++.|.+..++.+..+++|..-.- +.....
T Consensus 139 i~~~-~~~~~~~~~~d~~~~~~~~l-~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~~vLvG~prL~~~l~~~~~~~~ 216 (297)
T COG2842 139 ICAA-AFGATDGTINDLTERLMIRL-RDTVRLIIVDEADRLPYRALEELRRIHDKTGIGVVLVGMPRLFKVLRRPEDELS 216 (297)
T ss_pred HHHH-HhcccchhHHHHHHHHHHHH-ccCcceeeeehhhccChHHHHHHHHHHHhhCceEEEecChHHHhccccchHHHH
Confidence 0000 00011112222222221111 356789999999999999999999999986544444443221 111111
Q ss_pred HHHccceE---EEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 036794 570 IIISRCQK---FFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL 632 (1152)
Q Consensus 570 aL~SR~qv---I~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl 632 (1152)
.+.+|..+ +...-++..++.....+... .++++.+..+.....|++|.+...+......
T Consensus 217 rl~srv~v~~~~~~~~~d~d~~~~~~~~~l~----~~~~~~v~~~~~~~~g~~~~L~~~l~~~~~~ 278 (297)
T COG2842 217 RLYSRVRVGKLLGEKFPDADELAEIAALVLP----TEDELVLMQVIKETEGNIRRLDKILAGAVGT 278 (297)
T ss_pred HHHHHhhhHhhhhhhhhhhHHHHHHHHhhCc----cchHHHHHHHHHhcchhHhHHHHHHhhhhhh
Confidence 23333321 11111222333333332221 2567777777888899999988887765443
No 343
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.03 E-value=0.096 Score=54.60 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=23.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|+||||+||||+|+.||+.+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~ 26 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT 26 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe
Confidence 7899999999999999999998754
No 344
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.98 E-value=0.061 Score=54.75 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=59.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHH--HHHHhhCC
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDL--LDNMVTSR 520 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreL--le~a~~~P 520 (1152)
+..+.|.||.|+||||++++++..+..... ...++ +. ..+..+.. ....+.+.+ ...+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-----------~i~~~-~~-~~i~~~~~---lS~G~~~rv~laral~--- 86 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEG-----------IVTWG-ST-VKIGYFEQ---LSGGEKMRLALAKLLL--- 86 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCce-----------EEEEC-Ce-EEEEEEcc---CCHHHHHHHHHHHHHh---
Confidence 346899999999999999999765432110 01111 00 11222211 222333322 22222
Q ss_pred CCCCceEEEEeCCC-CCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 521 PPSQYRIFVFDDCD-TLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 521 ~~a~~kVVIIDEID-~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
.+..++++||.. .+.......|.++|.+. ...+|++|++++.
T Consensus 87 --~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~ 129 (144)
T cd03221 87 --ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYF 129 (144)
T ss_pred --cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHH
Confidence 455799999975 56777777888888775 2467777777653
No 345
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.96 E-value=0.024 Score=59.34 Aligned_cols=45 Identities=13% Similarity=0.232 Sum_probs=33.1
Q ss_pred CCceEEEEeCCC-CCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcc
Q 036794 523 SQYRIFVFDDCD-TLSPDSWSAISKVVDRAPRRVVFILVSSSLDAL 567 (1152)
Q Consensus 523 a~~kVVIIDEID-~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL 567 (1152)
.+++++++||.- .|.......|.+.|.+......+|++|++++.+
T Consensus 115 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 115 QDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 456899999975 467777778888887654456788888877643
No 346
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.94 E-value=0.14 Score=60.75 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=43.4
Q ss_pred CCceEEEEeCCCCCCHHH--HHHHHHHHhh-CCCCEEEEEEcCCCCcchHHHHccce-----EEEecCCChhHHHH
Q 036794 523 SQYRIFVFDDCDTLSPDS--WSAISKVVDR-APRRVVFILVSSSLDALPHIIISRCQ-----KFFFPKMKDADIIY 590 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~ea--qnaLLklLEe-pp~~VifILaTN~~dkL~~aL~SR~q-----vI~F~~p~~~EI~e 590 (1152)
..+.+|+||=+++-..+. ...|-.+++. .+..+.|++.++.-..-...+..++. -+-|.++++..-..
T Consensus 280 ~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET~s~G 355 (407)
T COG1419 280 RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDETTSLG 355 (407)
T ss_pred hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcceeEEEcccccCchh
Confidence 456899999998865443 3455556554 45688888888876655555666554 24566666554333
No 347
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=95.92 E-value=0.021 Score=63.40 Aligned_cols=54 Identities=11% Similarity=0.266 Sum_probs=39.8
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhh---CCCCEEEEEEcCCCCcchHHHHccce
Q 036794 523 SQYRIFVFDDC-DTLSPDSWSAISKVVDR---APRRVVFILVSSSLDALPHIIISRCQ 576 (1152)
Q Consensus 523 a~~kVVIIDEI-D~Ls~eaqnaLLklLEe---pp~~VifILaTN~~dkL~~aL~SR~q 576 (1152)
..+.++||||. ..|...+...|+++|++ .+...-+|++|...+.+++-+..++.
T Consensus 188 ~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~ll 245 (257)
T COG1119 188 KDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLL 245 (257)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEE
Confidence 45789999995 55666777788888887 34467788889988888885544433
No 348
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.90 E-value=0.083 Score=64.74 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..+.|+||.|+||||++..|+..+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999987653
No 349
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.88 E-value=0.033 Score=57.90 Aligned_cols=41 Identities=12% Similarity=0.241 Sum_probs=31.1
Q ss_pred CCceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+.+++++||.-. |.......|.++|.+. ...+|++|++++
T Consensus 108 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~ 149 (166)
T cd03223 108 HKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPS 149 (166)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChh
Confidence 4568999999754 6777788888888875 356777888765
No 350
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.87 E-value=0.032 Score=58.01 Aligned_cols=22 Identities=41% Similarity=0.400 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+|++||||+|||+++..++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 7899999999999999887764
No 351
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=95.86 E-value=0.14 Score=58.42 Aligned_cols=134 Identities=16% Similarity=0.222 Sum_probs=77.6
Q ss_pred cCcccC-cHHHHHHHHHHHHh-----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCcc
Q 036794 420 FRDLVG-QNLVAQALSNAVMR-----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSR 493 (1152)
Q Consensus 420 FddLVG-Qe~v~q~Lk~aL~~-----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~ 493 (1152)
+.++.+ .++.+..|.+++.. ......++|+|+.|+||+++...|.+.++....... ....
T Consensus 47 L~~~~~~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~---------~~~~----- 112 (304)
T TIGR01613 47 LLETFGGDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAV---------ASLK----- 112 (304)
T ss_pred HHHHhCCCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCC---------cchh-----
Confidence 455554 44567777776643 334458999999999999999999877764321000 0000
Q ss_pred ceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh--------------CCCCEEEEE
Q 036794 494 NIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR--------------APRRVVFIL 559 (1152)
Q Consensus 494 dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe--------------pp~~VifIL 559 (1152)
+..++. ..+... .+ ....++++||++.-.....+.|..+... ......+|+
T Consensus 113 -~~~~~~-~~f~~a-------~l------~gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~ 177 (304)
T TIGR01613 113 -MNEFQE-HRFGLA-------RL------EGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQ 177 (304)
T ss_pred -hhhccC-CCchhh-------hh------cCCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEE
Confidence 000000 011110 11 3457999999875322222334333322 124667899
Q ss_pred EcCCCCcc---hHHHHccceEEEecC
Q 036794 560 VSSSLDAL---PHIIISRCQKFFFPK 582 (1152)
Q Consensus 560 aTN~~dkL---~~aL~SR~qvI~F~~ 582 (1152)
+||++..+ ..++.+|+.+|.|+.
T Consensus 178 ~tN~~P~~~~~~~a~~RR~~vi~f~~ 203 (304)
T TIGR01613 178 STNHLPRIRGFDGGIKRRLRIIPFTK 203 (304)
T ss_pred EcCCCCccCCCChhheeeEEEEeccC
Confidence 99986544 457899999999875
No 352
>PRK14532 adenylate kinase; Provisional
Probab=95.86 E-value=0.15 Score=53.71 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=23.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
++|.||||+||||+|+.||+.+++..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~ 28 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQ 28 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 78999999999999999999987654
No 353
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=95.80 E-value=0.022 Score=60.77 Aligned_cols=60 Identities=18% Similarity=0.344 Sum_probs=37.7
Q ss_pred CceEEEEeCCCCCCHH-HH-----HHHHHHHhhC-CCCEEEEEEcCCCCcchHHHHccceE-EEecCC
Q 036794 524 QYRIFVFDDCDTLSPD-SW-----SAISKVVDRA-PRRVVFILVSSSLDALPHIIISRCQK-FFFPKM 583 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~e-aq-----naLLklLEep-p~~VifILaTN~~dkL~~aL~SR~qv-I~F~~p 583 (1152)
...+||||||+..-+. .. ...+++|... ....-||++|-++..+++.++..++. +.+..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 5689999999976322 11 2444777663 35788999999999999989887763 444443
No 354
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.80 E-value=0.01 Score=66.29 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
-++|.||+|+|||++++.+++.+...
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccc
Confidence 57999999999999999999887643
No 355
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.74 E-value=0.16 Score=57.42 Aligned_cols=152 Identities=13% Similarity=0.203 Sum_probs=80.1
Q ss_pred cccCcHHHHHHHHHHHHh--CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeC
Q 036794 422 DLVGQNLVAQALSNAVMR--RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVG 499 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~--gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEId 499 (1152)
+||--+++++.+....+- ...+| .||.|..|+||.++++..|--.++. ++++.
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~Gh-~LLvG~~GsGr~sl~rLaa~i~~~~------------------------~~~i~ 63 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPRGH-ALLVGVGGSGRQSLARLAAFICGYE------------------------VFQIE 63 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTTEE-EEEECTTTSCHHHHHHHHHHHTTEE------------------------EE-TT
T ss_pred ceeeHHHHHHHHHHHHHHHcCCCCC-eEEecCCCccHHHHHHHHHHHhccc------------------------eEEEE
Confidence 455556666666544332 22234 6899999999999999776655443 44444
Q ss_pred CCCCCCHHHHHHHHHHH-hhCCCCCCceEEEEeCCCCCCHHHHH---------------------HHH------------
Q 036794 500 PVGNFDFESILDLLDNM-VTSRPPSQYRIFVFDDCDTLSPDSWS---------------------AIS------------ 545 (1152)
Q Consensus 500 aas~~~vdeIreLle~a-~~~P~~a~~kVVIIDEID~Ls~eaqn---------------------aLL------------ 545 (1152)
...+.+..+.++-+..+ ......++..+++|+|.+-......+ .++
T Consensus 64 ~~~~y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~ 143 (268)
T PF12780_consen 64 ITKGYSIKDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGI 143 (268)
T ss_dssp TSTTTHHHHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT-
T ss_pred eeCCcCHHHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCC
Confidence 44444555554444332 22233456678888887654221111 111
Q ss_pred ---------HHHhhCCCCEEEEEEcCCCC-------cchHHHHccceEEEecCCChhHHHHHHHHHHHH
Q 036794 546 ---------KVVDRAPRRVVFILVSSSLD-------ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK 598 (1152)
Q Consensus 546 ---------klLEepp~~VifILaTN~~d-------kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk 598 (1152)
.+++....+..||++-+... ...|+|.+.|.+.-|.+-+.+.+.......++.
T Consensus 144 ~~~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~ 212 (268)
T PF12780_consen 144 SDSRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSD 212 (268)
T ss_dssp -SSHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCH
T ss_pred CCchHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHh
Confidence 11122345555665543221 234568888988888888888777766655443
No 356
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.74 E-value=0.4 Score=61.09 Aligned_cols=182 Identities=17% Similarity=0.217 Sum_probs=97.0
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCC--------CCCCCCCCCCccccccCCCccceEE----e
Q 036794 431 QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL--------EQPKPCGFCNSCISHDRGKSRNIKE----V 498 (1152)
Q Consensus 431 q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~--------e~~epcg~c~~c~~i~~g~~~dviE----I 498 (1152)
..|.+-+..+.....+||+-|.|.||||++-.++..+..... ..++|.-+|..-........++.-. +
T Consensus 25 ~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l 104 (894)
T COG2909 25 PRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTL 104 (894)
T ss_pred HHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHH
Confidence 345555666666778999999999999999999752211100 1111111110000000000000000 0
Q ss_pred -CCCCCCCHH-HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcCCCCcc-hHHHHcc
Q 036794 499 -GPVGNFDFE-SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSSSLDAL-PHIIISR 574 (1152)
Q Consensus 499 -daas~~~vd-eIreLle~a~~~P~~a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN~~dkL-~~aL~SR 574 (1152)
.......+. -+..++.++... .++-.+|||+-|.++..+ ...|..+|+..|.++.+|++|.....+ ...++=|
T Consensus 105 ~q~~~~~~l~~l~~~L~~Ela~~---~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr 181 (894)
T COG2909 105 LQKHQYVSLESLLSSLLNELASY---EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLR 181 (894)
T ss_pred HHhcccccHHHHHHHHHHHHHhh---cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeeh
Confidence 000011111 122333333222 334689999999997765 457778888899999999999643322 1222222
Q ss_pred ceEEEec----CCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Q 036794 575 CQKFFFP----KMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGS 618 (1152)
Q Consensus 575 ~qvI~F~----~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GD 618 (1152)
-+.+.+. .++.+|..+++.. .-+..++...++.|..+++|=
T Consensus 182 ~~llEi~~~~Lrf~~eE~~~fl~~---~~~l~Ld~~~~~~L~~~teGW 226 (894)
T COG2909 182 DELLEIGSEELRFDTEEAAAFLND---RGSLPLDAADLKALYDRTEGW 226 (894)
T ss_pred hhHHhcChHhhcCChHHHHHHHHH---cCCCCCChHHHHHHHhhcccH
Confidence 2211111 2345666666542 234889999999999998873
No 357
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.72 E-value=0.033 Score=58.32 Aligned_cols=52 Identities=10% Similarity=0.291 Sum_probs=38.0
Q ss_pred CCCceEEEEeCCCCCCH-H--HHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccce
Q 036794 522 PSQYRIFVFDDCDTLSP-D--SWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~-e--aqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~q 576 (1152)
.+.+.+|||||+..+-. . ..+.++.+|+..|.++-+|+++.++. +.|.....
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p---~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP---KELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC---HHHHHhCc
Confidence 46789999999976522 1 34678999999899999999997743 44444443
No 358
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.71 E-value=0.034 Score=59.53 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
..++|+||.|.|||++.+.|+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 46899999999999999999843
No 359
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.70 E-value=0.045 Score=58.48 Aligned_cols=26 Identities=38% Similarity=0.644 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|+||||+|||+++..++....
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~ 37 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAA 37 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999987654
No 360
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.034 Score=57.89 Aligned_cols=45 Identities=16% Similarity=0.364 Sum_probs=33.0
Q ss_pred CCceEEEEeCCC-CCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcc
Q 036794 523 SQYRIFVFDDCD-TLSPDSWSAISKVVDRAPRRVVFILVSSSLDAL 567 (1152)
Q Consensus 523 a~~kVVIIDEID-~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL 567 (1152)
.+..++++||.- .|.......|.++|.+......+|++|++++.+
T Consensus 113 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 158 (171)
T cd03228 113 RDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158 (171)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 355899999975 466777778888887754457788888877643
No 361
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.69 E-value=0.2 Score=58.26 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=34.1
Q ss_pred cccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 422 DLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.++....+...|..+++.+. .+||+|++|+||||+++++...+..
T Consensus 142 ~~~~~~~~~~~L~~~v~~~~---nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 142 ELLAEKKIKEFLEHAVISKK---NIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred hhhhhHHHHHHHHHHHHcCC---cEEEECCCCCCHHHHHHHHHhhCCC
Confidence 34455566667777776542 4899999999999999999988754
No 362
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.69 E-value=0.04 Score=70.69 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=34.6
Q ss_pred HHHHHhhCCCCCCceEEEEeCCCCCCHH--H-HHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 512 LLDNMVTSRPPSQYRIFVFDDCDTLSPD--S-WSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 512 Lle~a~~~P~~a~~kVVIIDEID~Ls~e--a-qnaLLklLEepp~~VifILaTN~~ 564 (1152)
++..+...|...++.+|||||+|.=+.+ . ...|.+++...+.+..+|+.+...
T Consensus 150 Llrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATl 205 (845)
T COG1643 150 LLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATL 205 (845)
T ss_pred HHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence 4555556677789999999999985433 2 233444455555567777766544
No 363
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.68 E-value=0.17 Score=55.44 Aligned_cols=145 Identities=15% Similarity=0.142 Sum_probs=69.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ 524 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~ 524 (1152)
.|+|.||+|||||.+|-.+|+..+.+...... ..| |..+..++.. .... . ..+-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dr--iq~--y~~l~v~Sgr----------p~~~-------e-----l~~~ 56 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDR--IQC--YPELSVGSGR----------PTPS-------E-----LKGT 56 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-S--GGG---GGGTTTTT-------------SG-------G-----GTT-
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecc--eec--ccccccccCC----------CCHH-------H-----Hccc
Confidence 68999999999999999999999876322110 001 1111111110 0000 0 1123
Q ss_pred ceEEEEeCCCC----CC-HHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHcc-----ce--EEEecCCChhHHHHHH
Q 036794 525 YRIFVFDDCDT----LS-PDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISR-----CQ--KFFFPKMKDADIIYTL 592 (1152)
Q Consensus 525 ~kVVIIDEID~----Ls-~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR-----~q--vI~F~~p~~~EI~eiL 592 (1152)
.+ ++|||-.- ++ .++.+.|+..+.+....-.+|+-......+..-..++ ++ +..++-++.+.....+
T Consensus 57 ~R-iyL~~r~l~~G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra 135 (233)
T PF01745_consen 57 RR-IYLDDRPLSDGIINAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARA 135 (233)
T ss_dssp EE-EES----GGG-S--HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHH
T ss_pred ce-eeeccccccCCCcCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHH
Confidence 34 66665321 22 3456677888888777778889888777444433333 22 4555666666666666
Q ss_pred HHHHHHc--CCCCCHHHHHHHHHhcC
Q 036794 593 QWIASKE--GIEIDKDALKLIASRSD 616 (1152)
Q Consensus 593 ~~iakke--Gl~Id~dALelLAe~s~ 616 (1152)
.+++++. .-.-.+..++.|+..|.
T Consensus 136 ~~Rv~~ML~p~~~~~Sll~EL~~lW~ 161 (233)
T PF01745_consen 136 KRRVRQMLRPDSSGPSLLEELVALWN 161 (233)
T ss_dssp HHHHHHHHS--SSS--HHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHh
Confidence 6665542 11234567777777753
No 364
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.67 E-value=0.018 Score=61.89 Aligned_cols=122 Identities=11% Similarity=0.054 Sum_probs=65.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCC-----CCCCCCCCCccccccCCCccceEEeCC-------CCCCCHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLE-----QPKPCGFCNSCISHDRGKSRNIKEVGP-------VGNFDFESILD 511 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e-----~~epcg~c~~c~~i~~g~~~dviEIda-------as~~~vdeIre 511 (1152)
..+++||++|.|||++|-.++-..-..... +-........-..+.......+..... ....+.....+
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 358899999999999999887654322111 000000000000000000000111110 00111233444
Q ss_pred HHHHHhhCCCCCCceEEEEeCCCCCCHH---HHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 512 LLDNMVTSRPPSQYRIFVFDDCDTLSPD---SWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 512 Lle~a~~~P~~a~~kVVIIDEID~Ls~e---aqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.++.+...-..+.+.+|||||+-.+-.. ..+.++.+|+..|..+-+|++..+..
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 4444444334578899999998654221 24578889999899999999987643
No 365
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.1 Score=65.51 Aligned_cols=233 Identities=17% Similarity=0.147 Sum_probs=125.0
Q ss_pred hhhhCCCCcCcccCcHHHHHHHHHH-----HHhCCCCcEEEEEc----CCCchHHHHHHHHHHHHc-ccCCCCCCCCCCC
Q 036794 412 TQKYMPRTFRDLVGQNLVAQALSNA-----VMRRKVGLLYVFYG----PHGTGKTSCARIFARALN-CQSLEQPKPCGFC 481 (1152)
Q Consensus 412 ~eKyRP~sFddLVGQe~v~q~Lk~a-----L~~gri~~~yLL~G----PpGTGKTtlARaLAkeL~-~~~~e~~epcg~c 481 (1152)
.+.-+|..|.++.+++......... ..-+.....+..+| ++|.+++..++.+-.... ........++.+.
T Consensus 95 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~~~~ 174 (647)
T COG1067 95 VPAGRPESFSELLGQKAEEKAEYLSYLILLALLGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPKNFV 174 (647)
T ss_pred ccccCCcchHHHHHhhhhHHHHHHhhhhHHHhhchhhhhhhhcccccccchhhHHHHHHHHHhhhhcccchhhhhhhhhh
Confidence 4456778999999987655444433 11223233467788 999999999876654421 1212222222221
Q ss_pred Cc-----cccc-----cCCCccceEEeCCCCC-CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 036794 482 NS-----CISH-----DRGKSRNIKEVGPVGN-FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR 550 (1152)
Q Consensus 482 ~~-----c~~i-----~~g~~~dviEIdaas~-~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe 550 (1152)
.. .... ..+.-.+-++.++.+. .+......+...+ -..+.++||||||+..|....+..+|+.+++
T Consensus 175 ~~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~~~~~i~pGa---VHkAngGVLiIdei~lL~~~~~w~~LKa~~~ 251 (647)
T COG1067 175 ELSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTTGHIRVKPGA---VHKANGGVLIIDEIGLLAQPLQWKLLKALLD 251 (647)
T ss_pred hhccccCCcEEecCCCChhhcceeEEEcCCCCccCCCCcccccCcc---cccccCcEEEEEhhhhhCcHHHHHHHHHHHh
Confidence 11 0000 0000001111111110 0000000010000 1135789999999999998877777777765
Q ss_pred ---------------------CCCCEEEEEEcCCCC--cchHHHHccce---E-EEecCC---ChhHHHHHHHHH----H
Q 036794 551 ---------------------APRRVVFILVSSSLD--ALPHIIISRCQ---K-FFFPKM---KDADIIYTLQWI----A 596 (1152)
Q Consensus 551 ---------------------pp~~VifILaTN~~d--kL~~aL~SR~q---v-I~F~~p---~~~EI~eiL~~i----a 596 (1152)
.|.+..+|+++|.-+ .+.+...+|.. . ..|... +++...+.++.+ +
T Consensus 252 k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~ 331 (647)
T COG1067 252 KEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELA 331 (647)
T ss_pred ccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHH
Confidence 246778888887422 23333333332 2 455442 344444444433 3
Q ss_pred HH-cCCCCCHHHHHHHHHh----c------CCCHHHHHHHHHHHHHhC-----CCCCHHHHHHHHhc
Q 036794 597 SK-EGIEIDKDALKLIASR----S------DGSLRDAEMTLEQLSLLG-----QRISVPLVQELVGL 647 (1152)
Q Consensus 597 kk-eGl~Id~dALelLAe~----s------~GDLR~Ain~LEkLsLlg-----~~IT~EdV~elVg~ 647 (1152)
+. .-..++.+|+..|... + .=.+|++.+++.-+...+ .-|+.++|.+++..
T Consensus 332 ~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 332 RDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHh
Confidence 34 3346899998888766 2 236888999998765442 13999999988755
No 366
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=95.64 E-value=0.051 Score=63.88 Aligned_cols=115 Identities=23% Similarity=0.304 Sum_probs=66.3
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHH
Q 036794 430 AQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESI 509 (1152)
Q Consensus 430 ~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeI 509 (1152)
+..|+..++.-...+.++|+|||.|||+.++..|.+-+...... + ++..+.+-.
T Consensus 249 l~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViS-------------f----------~Ns~ShFWL--- 302 (432)
T PF00519_consen 249 LIALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVIS-------------F----------VNSKSHFWL--- 302 (432)
T ss_dssp HHHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE--------------G----------GGTTSCGGG---
T ss_pred HHHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEE-------------e----------cCCCCcccc---
Confidence 35556666655556789999999999999999999988765211 1 111111111
Q ss_pred HHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHH----HHHHhhCC--------C-----CEEEEEEcCC-C--CcchH
Q 036794 510 LDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAI----SKVVDRAP--------R-----RVVFILVSSS-L--DALPH 569 (1152)
Q Consensus 510 reLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaL----LklLEepp--------~-----~VifILaTN~-~--dkL~~ 569 (1152)
.|. .+-+|.+||++ +...+.-+ ...|+..+ . -..+|++||. + +.-..
T Consensus 303 ---------qPL-~d~Ki~llDDA---T~~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~ 369 (432)
T PF00519_consen 303 ---------QPL-ADAKIALLDDA---TYPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWK 369 (432)
T ss_dssp ---------GGG-CT-SSEEEEEE----HHHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCH
T ss_pred ---------cch-hcCcEEEEcCC---cccHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhh
Confidence 122 45589999986 55566543 44454411 0 1125566652 2 22344
Q ss_pred HHHccceEEEecCC
Q 036794 570 IIISRCQKFFFPKM 583 (1152)
Q Consensus 570 aL~SR~qvI~F~~p 583 (1152)
-|.||...+.|+.+
T Consensus 370 YLhSRi~~f~F~n~ 383 (432)
T PF00519_consen 370 YLHSRITCFEFPNP 383 (432)
T ss_dssp HHCTTEEEEE--S-
T ss_pred hhhheEEEEEcCCc
Confidence 59999999999864
No 367
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.62 E-value=0.59 Score=60.88 Aligned_cols=106 Identities=18% Similarity=0.140 Sum_probs=72.6
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhCC-----CCEEEEEEcCCCCcchHHHHcc--ceEEEecCCChhHHHHHHHHH
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAP-----RRVVFILVSSSLDALPHIIISR--CQKFFFPKMKDADIIYTLQWI 595 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEepp-----~~VifILaTN~~dkL~~aL~SR--~qvI~F~~p~~~EI~eiL~~i 595 (1152)
.++-|+|+|++|-..+...+.|-.++.... .+-++.+.+..+. +.....+. ...|.+.|++..+....+...
T Consensus 153 ~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~-~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 153 EHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPT-LGEILKSATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred cCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccch-hhHHhhcCCceeEEecCcCchhhHHHHHHHH
Confidence 346789999999998888777777777643 1122222222222 33333333 346999999999999988877
Q ss_pred HHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036794 596 ASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLS 630 (1152)
Q Consensus 596 akkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLs 630 (1152)
+.. ......+.++.+.+.+.||.--+.+.+..+.
T Consensus 232 l~~-~~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~ 265 (849)
T COG3899 232 LGC-TKLLPAPLLELIFEKTKGNPFFIEEFLKALY 265 (849)
T ss_pred hCC-cccccchHHHHHHHHhcCCCccHHHHHHHHH
Confidence 754 3456778899999999998877777666554
No 368
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.58 E-value=0.074 Score=65.42 Aligned_cols=52 Identities=17% Similarity=0.352 Sum_probs=34.9
Q ss_pred HHHHHhhCCCCCCceEEEEeCCCC--CCHHHHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 512 LLDNMVTSRPPSQYRIFVFDDCDT--LSPDSWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 512 Lle~a~~~P~~a~~kVVIIDEID~--Ls~eaqnaLLklLEepp~~VifILaTN~ 563 (1152)
|+.++...|-.+.|.||||||+|. |+.+..-.|.+=+....++.-+++.+..
T Consensus 366 LlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT 419 (902)
T KOG0923|consen 366 LLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSAT 419 (902)
T ss_pred HHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccc
Confidence 444444556678999999999997 4555555666666666666666665543
No 369
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.58 E-value=0.056 Score=55.26 Aligned_cols=111 Identities=18% Similarity=0.182 Sum_probs=59.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCC----CccceEEeCCCCCCCHHHHHH--HHHHHh
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG----KSRNIKEVGPVGNFDFESILD--LLDNMV 517 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g----~~~dviEIdaas~~~vdeIre--Lle~a~ 517 (1152)
..+.|.||.|+|||+++++|+..+........ ... ..+... ....+..+.. ....+.+. +...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~--~~~----~~~~~~~~~~~~~~i~~~~q---lS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL--IDG----KDIAKLPLEELRRRIGYVPQ---LSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEE--ECC----EEcccCCHHHHHhceEEEee---CCHHHHHHHHHHHHHh
Confidence 57899999999999999999876532211000 000 000000 0000111111 12222222 222222
Q ss_pred hCCCCCCceEEEEeCCC-CCCHHHHHHHHHHHhhCCC-CEEEEEEcCCCCcch
Q 036794 518 TSRPPSQYRIFVFDDCD-TLSPDSWSAISKVVDRAPR-RVVFILVSSSLDALP 568 (1152)
Q Consensus 518 ~~P~~a~~kVVIIDEID-~Ls~eaqnaLLklLEepp~-~VifILaTN~~dkL~ 568 (1152)
.+..++++||.. .|.......|.+++.+... ...+|+++++.+.+.
T Consensus 97 -----~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 97 -----LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred -----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 335899999986 4666777777777766322 356778887766433
No 370
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.56 E-value=0.039 Score=55.77 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|+|++|+||||+|+.|++.++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~ 26 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAP 26 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCE
Confidence 7899999999999999999986543
No 371
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.54 E-value=0.1 Score=54.70 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
++|+|+||+|||++|+.|++.+++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~ 27 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH 27 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 68999999999999999999977653
No 372
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.53 E-value=0.21 Score=51.85 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.++|+||+|+|||+++..++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999987653
No 373
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.53 E-value=0.04 Score=59.69 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
..++|+||.|.|||++.+.++..
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999754
No 374
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.52 E-value=0.21 Score=59.21 Aligned_cols=108 Identities=15% Similarity=0.081 Sum_probs=55.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc-------CCCccce-EEeCCCCCCCHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD-------RGKSRNI-KEVGPVGNFDFESILDLLD 514 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~-------~g~~~dv-iEIdaas~~~vdeIreLle 514 (1152)
+..++|.||.|+||||++..+|..+....... ...+..+.... .....++ +.. ..+..++.+.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V---~lItaDtyR~gAveQLk~yae~lgvpv~~----~~dp~dL~~al~ 278 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTV---GFITTDTFRSGAVEQFQGYADKLDVELIV----ATSPAELEEAVQ 278 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE---EEEeCCccCccHHHHHHHHhhcCCCCEEe----cCCHHHHHHHHH
Confidence 45789999999999999999998763221100 00000000000 0000111 111 123455555555
Q ss_pred HHhhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhCCCC-EEEEEE
Q 036794 515 NMVTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDRAPRR-VVFILV 560 (1152)
Q Consensus 515 ~a~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEepp~~-VifILa 560 (1152)
.+... ..+.+||||=++.... +....|..+++...++ ++|++.
T Consensus 279 ~l~~~---~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLs 324 (407)
T PRK12726 279 YMTYV---NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFS 324 (407)
T ss_pred HHHhc---CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECC
Confidence 54321 3468999999988653 3445566665543333 344443
No 375
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.49 E-value=0.025 Score=61.46 Aligned_cols=35 Identities=14% Similarity=0.380 Sum_probs=21.2
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
..+|||||++.+++..... +|-....++.+|++..
T Consensus 120 ~~~iIvDEaQN~t~~~~k~---ilTR~g~~skii~~GD 154 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKM---ILTRIGEGSKIIITGD 154 (205)
T ss_dssp SEEEEE-SGGG--HHHHHH---HHTTB-TT-EEEEEE-
T ss_pred ceEEEEecccCCCHHHHHH---HHcccCCCcEEEEecC
Confidence 5799999999999876444 4555566777777764
No 376
>PRK07261 topology modulation protein; Provisional
Probab=95.48 E-value=0.12 Score=54.30 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=22.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|.|++|+||||+|+.|++.++..
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~ 27 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCP 27 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 6899999999999999999887644
No 377
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.48 E-value=0.12 Score=55.86 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..+.|+||||+|||+++..++...
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHh
Confidence 3589999999999999999998764
No 378
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.48 E-value=0.54 Score=52.57 Aligned_cols=77 Identities=18% Similarity=0.154 Sum_probs=47.2
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhC-CCCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCC
Q 036794 524 QYRIFVFDDCDTLSPDSWSAISKVVDRA-PRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIE 602 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~eaqnaLLklLEep-p~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~ 602 (1152)
...+||+|++..-. --.+.|..++... .-++-+|+.+-....+|+.++.-+..+-+-..+..++. .+.+..++.
T Consensus 98 ~~~LiIlDD~~~~~-~k~~~l~~~~~~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~~s~~dl~----~i~~~~~~~ 172 (241)
T PF04665_consen 98 PRFLIILDDLGDKK-LKSKILRQFFNNGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFNNSKRDLE----NIYRNMNIK 172 (241)
T ss_pred CCeEEEEeCCCCch-hhhHHHHHHHhcccccceEEEEEeeecccCCHHHhhcceEEEEecCcHHHHH----HHHHhcccc
Confidence 36799999986521 1123455665542 34778888888888899999888876443345555543 344444444
Q ss_pred CCH
Q 036794 603 IDK 605 (1152)
Q Consensus 603 Id~ 605 (1152)
.+.
T Consensus 173 ~~~ 175 (241)
T PF04665_consen 173 GPK 175 (241)
T ss_pred cch
Confidence 443
No 379
>PRK14528 adenylate kinase; Provisional
Probab=95.47 E-value=0.095 Score=55.69 Aligned_cols=27 Identities=33% Similarity=0.612 Sum_probs=23.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
.++|.||||+|||++|+.|++.+++..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~ 29 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQ 29 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 478999999999999999999887653
No 380
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.44 E-value=0.091 Score=59.45 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=23.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..++|.||+|+||||+.++++..+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 46899999999999999999987753
No 381
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.44 E-value=0.071 Score=57.81 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=42.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCC
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP 522 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~ 522 (1152)
+..+.|+||+|+|||+++..++....... +. .+....++.++....+....+.++.+.....+..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~-~~--------------~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~ 83 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPI-EL--------------GGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEE 83 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCcc-cc--------------CCCCccEEEEeCCCCcCHHHHHHHHHHhccChHh
Confidence 35789999999999999999975532111 00 0111235556555555566666666554322221
Q ss_pred CCceEEEEeC
Q 036794 523 SQYRIFVFDD 532 (1152)
Q Consensus 523 a~~kVVIIDE 532 (1152)
.-..+.+++.
T Consensus 84 ~~~~i~~~~~ 93 (235)
T cd01123 84 VLDNIYVARA 93 (235)
T ss_pred HhcCEEEEec
Confidence 2234666654
No 382
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.42 E-value=0.064 Score=55.61 Aligned_cols=115 Identities=22% Similarity=0.272 Sum_probs=58.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHH--HHHHhhCC
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDL--LDNMVTSR 520 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreL--le~a~~~P 520 (1152)
+..+.|.||.|+||||+.++|+..+........ -.+.-.............+..+.. ....+.+.+ ...+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~-~~g~~~~~~~~~~~~~~~i~~~~q---LS~G~~qrl~laral~--- 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDSGEIL-VDGKEVSFASPRDARRAGIAMVYQ---LSVGERQMVEIARALA--- 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECCEECCcCCHHHHHhcCeEEEEe---cCHHHHHHHHHHHHHh---
Confidence 346899999999999999999865432111000 000000000000000000111111 222222222 22222
Q ss_pred CCCCceEEEEeCCC-CCCHHHHHHHHHHHhhCC-CCEEEEEEcCCCCc
Q 036794 521 PPSQYRIFVFDDCD-TLSPDSWSAISKVVDRAP-RRVVFILVSSSLDA 566 (1152)
Q Consensus 521 ~~a~~kVVIIDEID-~Ls~eaqnaLLklLEepp-~~VifILaTN~~dk 566 (1152)
.+.+++++||.- .|.......+.++|.+.. ....+|++|.+.+.
T Consensus 99 --~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 99 --RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred --cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 345899999975 466777777777776542 35667778877653
No 383
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.40 E-value=0.34 Score=59.24 Aligned_cols=119 Identities=16% Similarity=0.264 Sum_probs=88.5
Q ss_pred ceEEEEeCCCCCCH--HHHHHHHHHHhh--CCCCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcC
Q 036794 525 YRIFVFDDCDTLSP--DSWSAISKVVDR--APRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEG 600 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~--eaqnaLLklLEe--pp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeG 600 (1152)
..+++|.++|.+-. .....|..+... ....+ +|+.+.... +|+.|..-+.+++|+.|+.+++...|..++...+
T Consensus 82 ~~~~vl~d~h~~~~~~~~~r~l~~l~~~~~~~~~~-~i~~~~~~~-~p~el~~~~~~~~~~lP~~~ei~~~l~~~~~~~~ 159 (489)
T CHL00195 82 PALFLLKDFNRFLNDISISRKLRNLSRILKTQPKT-IIIIASELN-IPKELKDLITVLEFPLPTESEIKKELTRLIKSLN 159 (489)
T ss_pred CcEEEEecchhhhcchHHHHHHHHHHHHHHhCCCE-EEEEcCCCC-CCHHHHhceeEEeecCcCHHHHHHHHHHHHHhcC
Confidence 46999999998843 233333333222 12333 444444444 8888988888999999999999999999888888
Q ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 036794 601 IEIDKDALKLIASRSDG-SLRDAEMTLEQLSLLGQRISVPLVQELV 645 (1152)
Q Consensus 601 l~Id~dALelLAe~s~G-DLR~Ain~LEkLsLlg~~IT~EdV~elV 645 (1152)
+.++++.++.|+..+.| +.-++.+.+.++....+.|+.+++..++
T Consensus 160 ~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~~~~~~~~~~~i~ 205 (489)
T CHL00195 160 IKIDSELLENLTRACQGLSLERIRRVLSKIIATYKTIDENSIPLIL 205 (489)
T ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCCChhhHHHHH
Confidence 99999999999999777 6788888888866556778888776554
No 384
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.38 E-value=0.075 Score=72.85 Aligned_cols=108 Identities=14% Similarity=0.174 Sum_probs=57.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHh-----h
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV-----T 518 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~-----~ 518 (1152)
..++|.|.+|||||++.+.+...+.... ... ++.....+........+.+ .......|..++.... .
T Consensus 985 r~~~I~G~AGTGKTT~l~~v~~~~~~l~-~~~---~~~V~glAPTgrAAk~L~e----~Gi~A~TI~s~L~~~~~~~~~~ 1056 (1747)
T PRK13709 985 RFTVVQGYAGVGKTTQFRAVMSAVNTLP-ESE---RPRVVGLGPTHRAVGEMRS----AGVDAQTLASFLHDTQLQQRSG 1056 (1747)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhh-ccc---CceEEEECCcHHHHHHHHh----cCcchhhHHHHhcccccccccc
Confidence 4789999999999999999988764210 000 0000000000000000000 0112223333332210 0
Q ss_pred CCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEc
Q 036794 519 SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVS 561 (1152)
Q Consensus 519 ~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaT 561 (1152)
........||||||+.|+.......|++.++... ..+||+.
T Consensus 1057 ~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~~g--arvVLVG 1097 (1747)
T PRK13709 1057 ETPDFSNTLFLLDESSMVGNTDMARAYALIAAGG--GRAVSSG 1097 (1747)
T ss_pred cCCCCCCcEEEEEccccccHHHHHHHHHhhhcCC--CEEEEec
Confidence 0111345799999999999999999999887643 4555554
No 385
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.37 E-value=0.22 Score=53.26 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||+|+|||++++.|.+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999998764
No 386
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.34 E-value=0.085 Score=54.67 Aligned_cols=113 Identities=15% Similarity=0.180 Sum_probs=57.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCC------CCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHh
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQP------KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV 517 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~------epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~ 517 (1152)
...+++||.|+|||++.++++-.+........ ..|..+. ..... ++.... -..+..+...+...+.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~-----i~~~~~-lS~G~~~~~~la~~L~ 93 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAA--VSAEL-----IFTRLQ-LSGGEKELSALALILA 93 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCccee--eEEEE-----ehheee-ccccHHHHHHHHHHHH
Confidence 46899999999999999998765544321110 1111111 11000 011100 1122333333333333
Q ss_pred hCCCCCCceEEEEeCCCCC-CHHHHHHHHHHHhhC-CCCEEEEEEcCCCC
Q 036794 518 TSRPPSQYRIFVFDDCDTL-SPDSWSAISKVVDRA-PRRVVFILVSSSLD 565 (1152)
Q Consensus 518 ~~P~~a~~kVVIIDEID~L-s~eaqnaLLklLEep-p~~VifILaTN~~d 565 (1152)
..+. ....+++|||+..- .......+...+.+. .....+|++|.+++
T Consensus 94 ~~~~-~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~ 142 (162)
T cd03227 94 LASL-KPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE 142 (162)
T ss_pred hcCC-CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 2211 35689999998664 444444444444332 11467778887776
No 387
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.34 E-value=0.013 Score=58.33 Aligned_cols=25 Identities=36% Similarity=0.727 Sum_probs=22.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.++++||||+||||+|+.+++.+.+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~ 25 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGA 25 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTE
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCC
Confidence 4789999999999999999988764
No 388
>PRK10867 signal recognition particle protein; Provisional
Probab=95.34 E-value=0.71 Score=55.75 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|+|++|+||||++-.+|..+..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 568999999999999999999887643
No 389
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.33 E-value=0.67 Score=55.80 Aligned_cols=136 Identities=13% Similarity=0.241 Sum_probs=67.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCC-CCccc--c------ccCCCccceEEeCCCCCCC-HHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF-CNSCI--S------HDRGKSRNIKEVGPVGNFD-FESILDL 512 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~-c~~c~--~------i~~g~~~dviEIdaas~~~-vdeIreL 512 (1152)
+..++|+|++|+||||++..||..+...... ++.. |.... + ........++... ...+ ..-..+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~k---V~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~--~~~dp~~i~~~~ 174 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFK---PCLVCADTFRAGAFDQLKQNATKARIPFYGSY--TESDPVKIASEG 174 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCC---EEEEcCcccchhHHHHHHHHhhccCCeEEeec--CCCCHHHHHHHH
Confidence 4589999999999999999999877533111 1101 10000 0 0000111112211 1112 1222233
Q ss_pred HHHHhhCCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhh-CCCCEEEEEEcCCCC---cchHHHHccc--eEEEecCCC
Q 036794 513 LDNMVTSRPPSQYRIFVFDDCDTLSPD--SWSAISKVVDR-APRRVVFILVSSSLD---ALPHIIISRC--QKFFFPKMK 584 (1152)
Q Consensus 513 le~a~~~P~~a~~kVVIIDEID~Ls~e--aqnaLLklLEe-pp~~VifILaTN~~d---kL~~aL~SR~--qvI~F~~p~ 584 (1152)
++.+.. ..+.+||||=++.+..+ ....|.++.+. .|..++||+-+..-. .....+.... .-+-|.+++
T Consensus 175 l~~~~~----~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlTKlD 250 (429)
T TIGR01425 175 VEKFKK----ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITKLD 250 (429)
T ss_pred HHHHHh----CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEECcc
Confidence 433322 35689999999887653 44566665544 345566666554321 1223333322 235566666
Q ss_pred hhH
Q 036794 585 DAD 587 (1152)
Q Consensus 585 ~~E 587 (1152)
...
T Consensus 251 ~~a 253 (429)
T TIGR01425 251 GHA 253 (429)
T ss_pred CCC
Confidence 543
No 390
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.32 E-value=0.052 Score=60.49 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=35.8
Q ss_pred CcCcccCcHHHHHHHHHHHHhC-CCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 419 TFRDLVGQNLVAQALSNAVMRR-KVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+++++.-.....+.+.+.+... +....+||+||+|+||||++.++...+...
T Consensus 102 sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 102 SLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred cHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 5677765544444444444433 223469999999999999999999887644
No 391
>PRK06547 hypothetical protein; Provisional
Probab=95.32 E-value=0.16 Score=53.64 Aligned_cols=31 Identities=26% Similarity=0.240 Sum_probs=26.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 440 RKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 440 gri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..+..|+|+|++|+|||++|+.|++.++..
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~ 42 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQ 42 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4455679999999999999999999987644
No 392
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.29 E-value=0.076 Score=60.10 Aligned_cols=135 Identities=14% Similarity=0.192 Sum_probs=69.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc--cc----cCCCccceEEeCCCCCCCHHHHHHHHHHHh
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI--SH----DRGKSRNIKEVGPVGNFDFESILDLLDNMV 517 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~--~i----~~g~~~dviEIdaas~~~vdeIreLle~a~ 517 (1152)
..++|.||+|+|||+++..++..+........ ...+.... .. ......++-.. ...+...+.+.+..+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~--~i~~D~~ri~~~~ql~~~~~~~~~~~~---~~~~~~~l~~~l~~l~ 150 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG--FITTDHSRIGTVQQLQDYVKTIGFEVI---AVRDEAAMTRALTYFK 150 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEE--EEecCCCCHHHHHHHHHHhhhcCceEE---ecCCHHHHHHHHHHHH
Confidence 57899999999999999999887643211000 00010000 00 00000010000 0123345555555443
Q ss_pred hCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhC-CCCEEEEEEcC-CCCcchHHHHccce-----EEEecCCChhH
Q 036794 518 TSRPPSQYRIFVFDDCDTLS--PDSWSAISKVVDRA-PRRVVFILVSS-SLDALPHIIISRCQ-----KFFFPKMKDAD 587 (1152)
Q Consensus 518 ~~P~~a~~kVVIIDEID~Ls--~eaqnaLLklLEep-p~~VifILaTN-~~dkL~~aL~SR~q-----vI~F~~p~~~E 587 (1152)
.. .++.+||||-..... .+....|.++++.. +..++|++.++ ....+.. +..++. .+-|.+++...
T Consensus 151 ~~---~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~-~~~~f~~~~~~~~I~TKlDet~ 225 (270)
T PRK06731 151 EE---ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE-IITNFKDIHIDGIVFTKFDETA 225 (270)
T ss_pred hc---CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHH-HHHHhCCCCCCEEEEEeecCCC
Confidence 21 356899999999885 44566777776652 34566666544 3322322 222222 35566666544
No 393
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.28 E-value=0.23 Score=57.51 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.||+|+||||++..+|..+..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 568999999999999999999988753
No 394
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.27 E-value=0.12 Score=56.97 Aligned_cols=108 Identities=16% Similarity=0.223 Sum_probs=56.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHH-HHcccCCCCCCCCCCCCccccccCCCccc-eEEeCCC-------CCC--CHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFAR-ALNCQSLEQPKPCGFCNSCISHDRGKSRN-IKEVGPV-------GNF--DFESILDL 512 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAk-eL~~~~~e~~epcg~c~~c~~i~~g~~~d-viEIdaa-------s~~--~vdeIreL 512 (1152)
..++|+||.|.|||++.+.++. .+..... ...|+.. ..+ .-... +..+... +.+ ...++..+
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G-~~v~a~~----~~~--~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~i 104 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIG-SFVPASS----ATL--SIFDSVLTRMGASDSIQHGMSTFMVELSETSHI 104 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCC-CEEEcCc----eEE--eccceEEEEecCccccccccchHHHHHHHHHHH
Confidence 4689999999999999999987 3322211 0111111 000 00100 1111111 111 23344445
Q ss_pred HHHHhhCCCCCCceEEEEeCCCCCC--HHHH---HHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 513 LDNMVTSRPPSQYRIFVFDDCDTLS--PDSW---SAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 513 le~a~~~P~~a~~kVVIIDEID~Ls--~eaq---naLLklLEepp~~VifILaTN~~d 565 (1152)
++.+ ..+.+|+|||+..-+ .+.. .++++.|.+. .+..+|++|...+
T Consensus 105 l~~~------~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~ 155 (222)
T cd03287 105 LSNC------TSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPS 155 (222)
T ss_pred HHhC------CCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHH
Confidence 5443 356899999985532 2222 2455555443 4567788888766
No 395
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.24 E-value=0.09 Score=58.42 Aligned_cols=53 Identities=13% Similarity=0.265 Sum_probs=36.4
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhC--CCCEEEEEEcCCCCcchHHHHccceE
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRA--PRRVVFILVSSSLDALPHIIISRCQK 577 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEep--p~~VifILaTN~~dkL~~aL~SR~qv 577 (1152)
+.+++|+||.-. |....|..++++|.+. ..+..+||++.+... ...+-.|+.+
T Consensus 159 ~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~V 214 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAV 214 (252)
T ss_pred CCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheee
Confidence 578999999744 5556677777777662 357789999988773 3335555543
No 396
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.24 E-value=0.15 Score=57.53 Aligned_cols=51 Identities=18% Similarity=0.166 Sum_probs=38.2
Q ss_pred CCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 417 PRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 417 P~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..|+++--.+..++.|+.++.... ..++|+||+|+||||+++++...+..
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~~~~--GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEKPH--GIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhcCC--CEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 3456666556677777877775443 25899999999999999999887753
No 397
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.24 E-value=0.059 Score=56.22 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=31.0
Q ss_pred CCceEEEEeCCC-CCCHHHHHHHHHHHhhCC-CCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCD-TLSPDSWSAISKVVDRAP-RRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID-~Ls~eaqnaLLklLEepp-~~VifILaTN~~d 565 (1152)
.+.+++++||.- .|.......|.++|.+.. ....+|++|.+.+
T Consensus 113 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 113 GNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 456899999975 467777777777776632 3567788888765
No 398
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.20 E-value=0.13 Score=54.67 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=57.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHH--HHHHHHhhCC
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESIL--DLLDNMVTSR 520 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIr--eLle~a~~~P 520 (1152)
+..+.|.||.|+||||+++.++..+...... +.+. +. .+..+.........+-+ .+...+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-----------i~~~-g~--~i~~~~q~~~LSgGq~qrv~laral~--- 87 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDN-----------DEWD-GI--TPVYKPQYIDLSGGELQRVAIAAALL--- 87 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCcE-----------EEEC-CE--EEEEEcccCCCCHHHHHHHHHHHHHh---
Confidence 3468899999999999999998764322111 0110 10 01111110002222211 2222222
Q ss_pred CCCCceEEEEeCCC-CCCHHHHHHHHHHHhhCC--CCEEEEEEcCCCC
Q 036794 521 PPSQYRIFVFDDCD-TLSPDSWSAISKVVDRAP--RRVVFILVSSSLD 565 (1152)
Q Consensus 521 ~~a~~kVVIIDEID-~Ls~eaqnaLLklLEepp--~~VifILaTN~~d 565 (1152)
.+..++++||.- .|.......+.+.+.+.. ....+|++|.+.+
T Consensus 88 --~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 133 (177)
T cd03222 88 --RNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA 133 (177)
T ss_pred --cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 345899999975 466677777777776532 2256777887765
No 399
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.20 E-value=0.073 Score=59.58 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
+..+|++||||+|||+++..++..
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999988765
No 400
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=95.19 E-value=0.072 Score=64.80 Aligned_cols=150 Identities=17% Similarity=0.219 Sum_probs=92.3
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCC-----------CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCC
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRK-----------VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPK 476 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gr-----------i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~e 476 (1152)
...|.....| .|.|++.+++.+.-.+..|- ..-.+|+.|.|-|-|+.+.|.+.+.....-..
T Consensus 292 FdlLa~SLAP----SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~T--- 364 (818)
T KOG0479|consen 292 FDLLARSLAP----SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIAT--- 364 (818)
T ss_pred HHHHhhccCc----ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccc---
Confidence 3444445554 57799999999887776531 11269999999999999999986653321100
Q ss_pred CCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh------
Q 036794 477 PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR------ 550 (1152)
Q Consensus 477 pcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe------ 550 (1152)
...|++ ++- +.++-..+.+....-++. ..-..+.++||.|||+|+|+.-.--++-.+||.
T Consensus 365 ----------TGRGSS-GVG-LTAAVTtD~eTGERRLEA--GAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIa 430 (818)
T KOG0479|consen 365 ----------TGRGSS-GVG-LTAAVTTDQETGERRLEA--GAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIA 430 (818)
T ss_pred ----------cCCCCC-Ccc-ceeEEeeccccchhhhhc--CceEEccCceEEehhcccccchhHHHHHHHHhcceEEeE
Confidence 001111 111 111111111111112221 011236789999999999998888899999987
Q ss_pred -------CCCCEEEEEEcCCCC-------------cchHHHHccceEE
Q 036794 551 -------APRRVVFILVSSSLD-------------ALPHIIISRCQKF 578 (1152)
Q Consensus 551 -------pp~~VifILaTN~~d-------------kL~~aL~SR~qvI 578 (1152)
...++-+|.++|-.. .|+..|++||..+
T Consensus 431 KAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLl 478 (818)
T KOG0479|consen 431 KAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLL 478 (818)
T ss_pred eccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEE
Confidence 346777888887321 3888999999854
No 401
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.19 E-value=0.017 Score=61.08 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=17.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..++.||||||||+++..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 48999999999998777776665
No 402
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.19 E-value=0.23 Score=56.29 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|+||+|+||||++..+|..+.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 46889999999999999999998774
No 403
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.16 E-value=0.14 Score=58.91 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=30.3
Q ss_pred HHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 435 NAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 435 ~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..+...+.|-.+||.|++|+|||++|..||..++..
T Consensus 84 ~~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 84 RRIRKSKEPIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred HHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 445555677789999999999999999999998765
No 404
>PRK12338 hypothetical protein; Provisional
Probab=95.16 E-value=0.13 Score=59.39 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++++|++|+||||+|+.+|..++..
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~ 31 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIK 31 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCe
Confidence 4578999999999999999999998754
No 405
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.16 E-value=0.056 Score=57.40 Aligned_cols=65 Identities=6% Similarity=0.105 Sum_probs=42.2
Q ss_pred HHHHHHHHhhCCCCCCceEEEEeCCCCCCHH---HHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccce
Q 036794 509 ILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD---SWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576 (1152)
Q Consensus 509 IreLle~a~~~P~~a~~kVVIIDEID~Ls~e---aqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~q 576 (1152)
..+.++.+...-..+.+.+|||||+-.+-.- ..+.++++|+..|..+-+|++..+. |+.|.....
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~---p~~l~e~AD 149 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC---PQDLLELAD 149 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC---CHHHHHhCc
Confidence 4444444443333478899999998643111 1346888999989999999998764 344444444
No 406
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.15 E-value=0.042 Score=58.48 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=31.2
Q ss_pred CCceEEEEeCCCC-CCHHHHHHHHHHHhhCC-CCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDT-LSPDSWSAISKVVDRAP-RRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~-Ls~eaqnaLLklLEepp-~~VifILaTN~~d 565 (1152)
.+..++++||... |.......|+++|.+.. ....+|++|.+++
T Consensus 128 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 128 SNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 3568999999754 66777778888877643 3567788888765
No 407
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.14 E-value=0.024 Score=59.92 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++++|+|||||||+++.|+ .++..
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~ 26 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYK 26 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCc
Confidence 6899999999999999999 76654
No 408
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=95.14 E-value=0.087 Score=58.35 Aligned_cols=110 Identities=12% Similarity=0.155 Sum_probs=59.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCC-------CCC--CHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPV-------GNF--DFESILDLLD 514 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaa-------s~~--~vdeIreLle 514 (1152)
..++|+||...|||++.|.++-...-...-...||..+.. .+... -+..+... +.+ ...++..+++
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i--~~~d~---I~t~~~~~d~~~~~~S~F~~E~~~~~~il~ 118 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEI--PIFDR---IFTRIGDDDSIESGLSTFMAEMKRLSSILR 118 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEE--E--SE---EEEEES---SSTTSSSHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeeccccc--ccccE---EEeecccccccccccccHHHhHHHHHhhhh
Confidence 5789999999999999999987654332222234333111 11000 01122111 111 1234555555
Q ss_pred HHhhCCCCCCceEEEEeCCCCCCHH-----HHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 515 NMVTSRPPSQYRIFVFDDCDTLSPD-----SWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 515 ~a~~~P~~a~~kVVIIDEID~Ls~e-----aqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+ ..+.+|+|||+..-+.. ...+++++|.+. .++.+|++|+..+
T Consensus 119 ~~------~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~-~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 119 NA------TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEK-SGCFVIIATHFHE 167 (235)
T ss_dssp H--------TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHT-TT-EEEEEES-GG
T ss_pred hc------ccceeeecccccCCCChhHHHHHHHHHHHHHHHh-ccccEEEEeccch
Confidence 44 35689999999876432 233566666652 3567788887665
No 409
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.13 E-value=0.054 Score=64.79 Aligned_cols=25 Identities=36% Similarity=0.626 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..+.|.||+|+||||++..||..+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998753
No 410
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.12 E-value=0.099 Score=57.12 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
+..++++|+||+|||+++..++..
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYG 48 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 358999999999999999999765
No 411
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=95.11 E-value=0.11 Score=69.39 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 036794 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 428 ~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.....|..+|... .+++++|++|+||||.+=.+.-+
T Consensus 70 ~~~~~Il~~l~~~---~vvii~g~TGSGKTTqlPq~lle 105 (1283)
T TIGR01967 70 AKREDIAEAIAEN---QVVIIAGETGSGKTTQLPKICLE 105 (1283)
T ss_pred HHHHHHHHHHHhC---ceEEEeCCCCCCcHHHHHHHHHH
Confidence 3446666777653 36899999999999977555444
No 412
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.10 E-value=0.083 Score=56.56 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAk 465 (1152)
..++|+||.|.|||++.+.++.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 3689999999999999999983
No 413
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.08 E-value=0.14 Score=55.02 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.++|+||+|+||||++++++..+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999888763
No 414
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.05 E-value=0.022 Score=58.26 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|+|++|+|||++|+.||+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~ 31 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYD 31 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 4468999999999999999999998754
No 415
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=95.04 E-value=0.038 Score=67.94 Aligned_cols=42 Identities=14% Similarity=0.310 Sum_probs=30.7
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
++.|+++||.-. |.......+.+.|.+...+..+|++|+++.
T Consensus 487 ~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~ 529 (571)
T TIGR02203 487 DAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLS 529 (571)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhH
Confidence 467999999854 566677788888877555667777777754
No 416
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.00 E-value=0.042 Score=59.15 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+++.|+||+|||++++.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 3689999999999999998874
No 417
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.99 E-value=0.23 Score=60.54 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+.+++|.||.|+||||++..||..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 35899999999999999999998763
No 418
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.98 E-value=0.16 Score=71.02 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=28.8
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEE
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILV 560 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILa 560 (1152)
....||||||+.+++......|++..+.....++||.=
T Consensus 528 ~~~~vlIVDEAsMl~~~~~~~Ll~~a~~~garvVlvGD 565 (1960)
T TIGR02760 528 SNKDIFVVDEANKLSNNELLKLIDKAEQHNSKLILLND 565 (1960)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhhcCCEEEEEcC
Confidence 45689999999999999888888887764444444443
No 419
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.98 E-value=0.16 Score=69.09 Aligned_cols=99 Identities=17% Similarity=0.267 Sum_probs=56.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCC---------CCCCHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPV---------GNFDFESILDLLD 514 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaa---------s~~~vdeIreLle 514 (1152)
..++|.|.+|||||++.+.+...+.... +.. ...+.-+.+. .......+..++.
T Consensus 853 r~~~IqG~AGTGKTT~l~~i~~~~~~l~-e~~----------------g~~V~glAPTgkAa~~L~e~Gi~A~TIasfL~ 915 (1623)
T PRK14712 853 RFTVVQGYAGVGKTTQFRAVMSAVNMLP-ESE----------------RPRVVGLGPTHRAVGEMRSAGVDAQTLASFLH 915 (1623)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHh-hcc----------------CceEEEEechHHHHHHHHHhCchHhhHHHHhc
Confidence 4689999999999999988877653210 000 0001111110 0112222333332
Q ss_pred HHh-----hCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEc
Q 036794 515 NMV-----TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVS 561 (1152)
Q Consensus 515 ~a~-----~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaT 561 (1152)
... .........||||||+.|+....+..|++.++... ..+||+.
T Consensus 916 ~~~~~~~~~~~~~~~~~llIVDEASMV~~~~m~~ll~~~~~~g--arvVLVG 965 (1623)
T PRK14712 916 DTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGG--GRAVASG 965 (1623)
T ss_pred cccchhhcccCCCCCCcEEEEEccccccHHHHHHHHHhhhhCC--CEEEEEc
Confidence 210 00111245799999999999999889999887633 4455554
No 420
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.98 E-value=0.067 Score=55.80 Aligned_cols=43 Identities=16% Similarity=0.320 Sum_probs=30.9
Q ss_pred CCceEEEEeCCCC-CCHHHHHHHHHHHhhCC-CCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDT-LSPDSWSAISKVVDRAP-RRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~-Ls~eaqnaLLklLEepp-~~VifILaTN~~d 565 (1152)
.+..++++||.-. |.......|+++|.+.. ....+|++|.+.+
T Consensus 112 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~ 156 (173)
T cd03230 112 HDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156 (173)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 4568999999754 56677778888887643 2466788887765
No 421
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.96 E-value=0.12 Score=54.93 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|.||+|+|||++++.|+..+.
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 44689999999999999999998754
No 422
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.93 E-value=0.085 Score=67.10 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=71.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC----CCccceEEeCCCCCCCHHHHHHHHHHHhh
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR----GKSRNIKEVGPVGNFDFESILDLLDNMVT 518 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~----g~~~dviEIdaas~~~vdeIreLle~a~~ 518 (1152)
+.+|+|.||.|+||||++..||..+.............+.. ..+.. ..+.....+......+...+.+.++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt-~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-- 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDS-FRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-- 261 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcc-cchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh--
Confidence 35899999999999999999997653211000000000000 00000 000000000000112344455555543
Q ss_pred CCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhh-CCCCEEEEEEcCCC-Ccch---HHHHc----cceEEEecCCChhH
Q 036794 519 SRPPSQYRIFVFDDCDTLSPD--SWSAISKVVDR-APRRVVFILVSSSL-DALP---HIIIS----RCQKFFFPKMKDAD 587 (1152)
Q Consensus 519 ~P~~a~~kVVIIDEID~Ls~e--aqnaLLklLEe-pp~~VifILaTN~~-dkL~---~aL~S----R~qvI~F~~p~~~E 587 (1152)
..+.+||||=+.....+ ....|..+.+. .+..+++|+.++.- +.+. ..+.. ...-+-|.++++..
T Consensus 262 ----~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~ 337 (767)
T PRK14723 262 ----GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEAT 337 (767)
T ss_pred ----cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCC
Confidence 35589999999987543 23333333322 45567777765532 2222 22221 12346677777654
Q ss_pred HHHHHHHHHHHcC
Q 036794 588 IIYTLQWIASKEG 600 (1152)
Q Consensus 588 I~eiL~~iakkeG 600 (1152)
-.-.+-.++...+
T Consensus 338 ~~G~iL~i~~~~~ 350 (767)
T PRK14723 338 HLGPALDTVIRHR 350 (767)
T ss_pred CccHHHHHHHHHC
Confidence 4443333443333
No 423
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=94.92 E-value=0.17 Score=61.13 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=28.3
Q ss_pred HHhCCCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 437 VMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 437 L~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+...+.+..++|+|++|+|||++|..+|..++..
T Consensus 249 i~~~k~p~vil~~G~~G~GKSt~a~~LA~~lg~~ 282 (475)
T PRK12337 249 IRRPPRPLHVLIGGVSGVGKSVLASALAYRLGIT 282 (475)
T ss_pred hhccCCCeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 3444457789999999999999999999998754
No 424
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.91 E-value=0.13 Score=62.26 Aligned_cols=56 Identities=21% Similarity=0.201 Sum_probs=44.4
Q ss_pred hhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 414 KyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
.+..-.|+++.........+..++.... -.+|++||.|+||||+..++.+.++...
T Consensus 231 ~~~~l~l~~Lg~~~~~~~~~~~~~~~p~--GliLvTGPTGSGKTTTLY~~L~~ln~~~ 286 (500)
T COG2804 231 DQVILDLEKLGMSPFQLARLLRLLNRPQ--GLILVTGPTGSGKTTTLYAALSELNTPE 286 (500)
T ss_pred ccccCCHHHhCCCHHHHHHHHHHHhCCC--eEEEEeCCCCCCHHHHHHHHHHHhcCCC
Confidence 3344567888777888888888877643 3589999999999999999999988664
No 425
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.89 E-value=0.024 Score=66.99 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.||.||+|+|||++++.|++.+...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhh
Confidence 6899999999999999999988654
No 426
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.89 E-value=0.052 Score=60.00 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=22.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
++|+|+||+||||+|+.+++.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998753
No 427
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.87 E-value=0.045 Score=57.95 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|+||.|.|||++.+.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999984
No 428
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.82 E-value=0.1 Score=54.96 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.+|++|++|+|||++|..++..++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC
Confidence 479999999999999999998865
No 429
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.80 E-value=0.57 Score=49.60 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
..++|.|++|+|||++...+...
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 46899999999999999998765
No 430
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.75 E-value=0.064 Score=66.24 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=30.5
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
++.++++||.-. |..+....+.+.|.+...+..+|++|.+++
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~ 540 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence 367999999854 566666777777777555677777887764
No 431
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.74 E-value=0.46 Score=47.18 Aligned_cols=25 Identities=32% Similarity=0.656 Sum_probs=22.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+.|.|++|+|||++|+.|++.++..
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~ 26 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLP 26 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 6899999999999999999998755
No 432
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.72 E-value=0.14 Score=49.48 Aligned_cols=106 Identities=13% Similarity=0.140 Sum_probs=52.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCH---H----HHHHHHHHHhh
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF---E----SILDLLDNMVT 518 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~v---d----eIreLle~a~~ 518 (1152)
++|.|++|+||||+..+|...-...... ..++..-.....+. -....+..+|.++-.+. . .+...++.+
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~~~~-~~~~T~~~~~~~~~-~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~-- 77 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAKVSN-IPGTTRDPVYGQFE-YNNKKFILVDTPGINDGESQDNDGKEIRKFLEQI-- 77 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSEESS-STTSSSSEEEEEEE-ETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH--
T ss_pred EEEECCCCCCHHHHHHHHhccccccccc-cccceeeeeeeeee-eceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH--
Confidence 6899999999999999998531111100 01111111000000 01222345555443321 1 122333333
Q ss_pred CCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEE
Q 036794 519 SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFIL 559 (1152)
Q Consensus 519 ~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifIL 559 (1152)
...+.-++++| ++....+....+++.|+ ...++++|+
T Consensus 78 --~~~d~ii~vv~-~~~~~~~~~~~~~~~l~-~~~~~i~v~ 114 (116)
T PF01926_consen 78 --SKSDLIIYVVD-ASNPITEDDKNILRELK-NKKPIILVL 114 (116)
T ss_dssp --CTESEEEEEEE-TTSHSHHHHHHHHHHHH-TTSEEEEEE
T ss_pred --HHCCEEEEEEE-CCCCCCHHHHHHHHHHh-cCCCEEEEE
Confidence 22345677788 77644455667777776 445555554
No 433
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.71 E-value=0.16 Score=54.55 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=32.4
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
...++++||... +.......|..+|.+......+|++|.+++
T Consensus 135 ~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~ 177 (197)
T cd03278 135 PSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKG 177 (197)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence 347999999865 667778888888887544567888888866
No 434
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.71 E-value=0.21 Score=56.41 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=22.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..++|+|+||+||||+|+.|++.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 468999999999999999999987
No 435
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.70 E-value=0.37 Score=62.00 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=21.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
..++|+||.|.|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 47899999999999999999876
No 436
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.70 E-value=0.026 Score=54.56 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL 467 (1152)
++|+|++|+||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999996
No 437
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=94.68 E-value=0.27 Score=63.57 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHH
Q 036794 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCAR 461 (1152)
Q Consensus 428 ~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlAR 461 (1152)
.+...|.+++..++ .+++.||+|+|||+..=
T Consensus 8 ~~~~~i~~~l~~~~---~vvv~A~TGSGKTt~~p 38 (812)
T PRK11664 8 AVLPELLTALKTAP---QVLLKAPTGAGKSTWLP 38 (812)
T ss_pred HHHHHHHHHHHhCC---CEEEEcCCCCCHHHHHH
Confidence 45566777776543 48999999999999764
No 438
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.68 E-value=0.091 Score=63.45 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..+||+||||+|||+++..++..+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a 105 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLA 105 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999988654
No 439
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=94.67 E-value=0.12 Score=56.40 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
..++|+||.|.|||++.+.++..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 46899999999999999999753
No 440
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.63 E-value=0.087 Score=57.79 Aligned_cols=111 Identities=14% Similarity=0.208 Sum_probs=57.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCC-------CCC--CHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPV-------GNF--DFESILDLL 513 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaa-------s~~--~vdeIreLl 513 (1152)
...++|+||.|.|||++.+.++-...-...-...||... .+..- ..-+..+... +.+ ...++..++
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~----~i~~~-~~i~~~~~~~d~~~~~~StF~~e~~~~~~il 104 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSM----RLSLV-DRIFTRIGARDDIMKGESTFMVELSETANIL 104 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCcccc----Eeccc-cEEEEecCcccccccCcchHHHHHHHHHHHH
Confidence 346899999999999999999775322211111222211 11000 0001111111 111 123344445
Q ss_pred HHHhhCCCCCCceEEEEeCCCCCC-H-H---HHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 514 DNMVTSRPPSQYRIFVFDDCDTLS-P-D---SWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 514 e~a~~~P~~a~~kVVIIDEID~Ls-~-e---aqnaLLklLEepp~~VifILaTN~~d 565 (1152)
+.+ ..+.+|+|||+..-. + + ...+++++|.+. .++.+|++|...+
T Consensus 105 ~~~------~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~-~~~~~i~~TH~~e 154 (218)
T cd03286 105 RHA------TPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKK-VKCLTLFSTHYHS 154 (218)
T ss_pred HhC------CCCeEEEEecccCCCCchHHHHHHHHHHHHHHHh-cCCcEEEEeccHH
Confidence 443 456899999986532 2 2 223444555442 3678888888765
No 441
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.61 E-value=0.11 Score=54.58 Aligned_cols=44 Identities=16% Similarity=0.353 Sum_probs=31.0
Q ss_pred CCceEEEEeCCCC-CCHHHHHHHHHHHhhCCC--CEEEEEEcCCCCc
Q 036794 523 SQYRIFVFDDCDT-LSPDSWSAISKVVDRAPR--RVVFILVSSSLDA 566 (1152)
Q Consensus 523 a~~kVVIIDEID~-Ls~eaqnaLLklLEepp~--~VifILaTN~~dk 566 (1152)
.+.+++++||.-. |.......|.++|.+... ...+|++|.+++.
T Consensus 117 ~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 163 (178)
T cd03229 117 MDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDE 163 (178)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 4558999999754 667777788887776432 3677788877653
No 442
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=94.56 E-value=0.049 Score=64.67 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=23.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|.||+|+|||++++.|++.+...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhccc
Confidence 358999999999999999999987543
No 443
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.56 E-value=0.07 Score=56.01 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=31.6
Q ss_pred CCceEEEEeCCC-CCCHHHHHHHHHHHhhCCC--CEEEEEEcCCCCc
Q 036794 523 SQYRIFVFDDCD-TLSPDSWSAISKVVDRAPR--RVVFILVSSSLDA 566 (1152)
Q Consensus 523 a~~kVVIIDEID-~Ls~eaqnaLLklLEepp~--~VifILaTN~~dk 566 (1152)
.+..++++||.- .|.......|.++|.+... ...+|++|.+++.
T Consensus 114 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 114 QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 345899999975 5677777778887776433 4677888887663
No 444
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.52 E-value=0.22 Score=52.86 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.++|+||+|+||+++.+++|..+.
T Consensus 31 ~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccC
Confidence 589999999999999999998653
No 445
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.52 E-value=0.63 Score=53.43 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=24.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
.+|++||.|+||||+.-++-.++|...
T Consensus 127 LILVTGpTGSGKSTTlAamId~iN~~~ 153 (353)
T COG2805 127 LILVTGPTGSGKSTTLAAMIDYINKHK 153 (353)
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhccC
Confidence 589999999999999999999998764
No 446
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.48 E-value=0.19 Score=59.33 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=22.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+||+|+||+|||+++..++..+.
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a 107 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLA 107 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999987654
No 447
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.44 E-value=0.14 Score=56.43 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||+|+|||+++..++..+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3479999999999999986655543
No 448
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.43 E-value=0.2 Score=58.64 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=41.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHh
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV 517 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~ 517 (1152)
....+.|+||+|+|||+++..++-....+.. ..+....+++++..+.+..+++.++.+.+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~---------------~gg~~~~vvyIdTE~tF~peRl~~ia~~~g 185 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTE---------------MGGGNGKVAYIDTEGTFRPDRIVPIAERFG 185 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchh---------------hCCCCceEEEEEcCCCCCHHHHHHHHHHcC
Confidence 3458899999999999999988654322100 001112367788777788888888877653
No 449
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=94.43 E-value=0.37 Score=55.60 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=24.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|.||+|+|||++|..||+.+++.
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~ 31 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGE 31 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCc
Confidence 478999999999999999999998754
No 450
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=94.42 E-value=0.26 Score=65.90 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 036794 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 428 ~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
...+.|..++... .+++++|++|+||||..=.+..+
T Consensus 77 ~~r~~Il~ai~~~---~VviI~GeTGSGKTTqlPq~lle 112 (1294)
T PRK11131 77 QKKQDILEAIRDH---QVVIVAGETGSGKTTQLPKICLE 112 (1294)
T ss_pred HHHHHHHHHHHhC---CeEEEECCCCCCHHHHHHHHHHH
Confidence 4445666666654 36899999999999965544444
No 451
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.40 E-value=0.46 Score=57.26 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|.|++|+||||++..+|..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 46899999999999999999998864
No 452
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.38 E-value=0.24 Score=56.62 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=39.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHH
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNM 516 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a 516 (1152)
.+..++|+||||+|||+++..++.....+.. ..+....+++++....+..+.+.++.+..
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~---------------~g~~~~~~~yi~te~~f~~~rl~~~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEE---------------KGGLGGKAVYIDTENTFRPERIMQMAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcc---------------cCCCcceEEEEECCCCCCHHHHHHHHHHc
Confidence 3468899999999999999999765432100 00111136777776667777777776654
No 453
>PF13245 AAA_19: Part of AAA domain
Probab=94.37 E-value=0.053 Score=49.90 Aligned_cols=24 Identities=50% Similarity=0.682 Sum_probs=17.2
Q ss_pred cEEEEEcCCCchHHH-HHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTS-CARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTt-lARaLAkeL 467 (1152)
+.+++.||||||||+ +++.++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456779999999994 555555544
No 454
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.33 E-value=0.25 Score=53.16 Aligned_cols=26 Identities=42% Similarity=0.575 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|+|+||+|||+++..++..+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~ 44 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETA 44 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999988764
No 455
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.32 E-value=0.2 Score=57.65 Aligned_cols=59 Identities=22% Similarity=0.330 Sum_probs=39.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNM 516 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a 516 (1152)
+..++|+||||+|||+++..++........ ..+....+++++....+..+.+.++.+.+
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~---------------~gg~~~~~~yi~te~~f~~~rl~~~~~~~ 160 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEE---------------KGGLEGKAVYIDTEGTFRPERIEQMAEAL 160 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccc---------------cCCCCceEEEEeCCCCcCHHHHHHHHHHc
Confidence 468999999999999999999755322110 00111236677766667778877777654
No 456
>COG3910 Predicted ATPase [General function prediction only]
Probab=94.27 E-value=0.37 Score=52.06 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=30.7
Q ss_pred CCceEEEEeCCCC-CCHHHHHHHHHHHhh-CCCCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDT-LSPDSWSAISKVVDR-APRRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~-Ls~eaqnaLLklLEe-pp~~VifILaTN~~d 565 (1152)
.+.+++|+||-+. |++.-|-.||..|.. .....-||++|..|=
T Consensus 145 ~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 145 NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 4568999999876 577767677766655 223477888888764
No 457
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.26 E-value=0.15 Score=54.22 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=29.5
Q ss_pred ceEEEEeCCCC-CCHHHHHHHHHHHhhCC-CCEEEEEEcCCCC
Q 036794 525 YRIFVFDDCDT-LSPDSWSAISKVVDRAP-RRVVFILVSSSLD 565 (1152)
Q Consensus 525 ~kVVIIDEID~-Ls~eaqnaLLklLEepp-~~VifILaTN~~d 565 (1152)
..++++||.-. |.......|+++|.+.. ....+|++|.+++
T Consensus 108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 58999999744 66667777777776532 3567788888776
No 458
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=94.19 E-value=1.3 Score=47.03 Aligned_cols=114 Identities=11% Similarity=0.194 Sum_probs=53.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc-CCCccceEEeCCCCCCCH----HHHHHHHHHHhhC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD-RGKSRNIKEVGPVGNFDF----ESILDLLDNMVTS 519 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~-~g~~~dviEIdaas~~~v----deIreLle~a~~~ 519 (1152)
.++|.|.+|+|||+++..|...-....... ..+.-..|.... .-....+..+|.++..+. +.+...+......
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~--~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLS--ASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccC--CCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 378999999999999999975422111100 011111121110 001234566666554332 2333333332222
Q ss_pred CCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-----CCCCEEEEEEc
Q 036794 520 RPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-----APRRVVFILVS 561 (1152)
Q Consensus 520 P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-----pp~~VifILaT 561 (1152)
...+...+|++-.++.+..... .+++.+.+ .-.+++++++-
T Consensus 80 ~~~g~~~illVi~~~~~t~~d~-~~l~~l~~~fg~~~~~~~ivv~T~ 125 (196)
T cd01852 80 SAPGPHAFLLVVPLGRFTEEEE-QAVETLQELFGEKVLDHTIVLFTR 125 (196)
T ss_pred cCCCCEEEEEEEECCCcCHHHH-HHHHHHHHHhChHhHhcEEEEEEC
Confidence 2234445666666777655433 33333332 12455565553
No 459
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=94.18 E-value=0.44 Score=48.54 Aligned_cols=20 Identities=35% Similarity=0.615 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|++|+|||++.+.+..
T Consensus 4 v~~vG~~~vGKTsli~~~~~ 23 (165)
T cd04140 4 VVVFGAGGVGKSSLVLRFVK 23 (165)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998864
No 460
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.17 E-value=0.25 Score=53.50 Aligned_cols=25 Identities=36% Similarity=0.593 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||||+|||++|..++...
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~ 47 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEA 47 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998765
No 461
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=94.16 E-value=0.31 Score=49.12 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=17.9
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
+++.|++|+|||+++..+..
T Consensus 3 i~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999998863
No 462
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.15 E-value=0.23 Score=57.34 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=39.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNM 516 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a 516 (1152)
...++|+||||+|||+++..++-....+.. ..+....+.+++....+..+++.++.+.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~---------------~gg~~~~vvYIdtE~~f~~eRi~~~a~~~ 154 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPRE---------------MGGGNGKVAYIDTEGTFRPDRIRAIAERF 154 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchh---------------hcCCCCeEEEEEcCCCCCHHHHHHHHHHc
Confidence 357899999999999999888754322100 00111236777777778888888877664
No 463
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.14 E-value=0.22 Score=56.51 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|.||+|+||||++..||..+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34799999999999999999998764
No 464
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.13 E-value=0.11 Score=55.42 Aligned_cols=43 Identities=9% Similarity=0.293 Sum_probs=30.9
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhC-CCCEEEEEEcCCCCc
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRA-PRRVVFILVSSSLDA 566 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEep-p~~VifILaTN~~dk 566 (1152)
+..++++||.-. |.......|.++|.+. .....+|++|.+++.
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~ 188 (205)
T cd03226 144 GKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEF 188 (205)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 467999999754 6677777777777764 235678888887663
No 465
>PRK03839 putative kinase; Provisional
Probab=94.11 E-value=0.038 Score=57.76 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=23.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
++|.|+||+||||+++.||+.++..+
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~ 28 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEY 28 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 78999999999999999999987654
No 466
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=94.08 E-value=0.35 Score=49.42 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
-++|.|++|+|||++++.+++..
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999997543
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.08 E-value=1.4 Score=46.66 Aligned_cols=39 Identities=31% Similarity=0.265 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 427 NLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 427 e~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+.....|...+..+. .++|.||+|+||||+++++...+.
T Consensus 12 ~~~~~~l~~~v~~g~---~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 12 PLQAAYLWLAVEARK---NILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHHHHHHHhCCC---EEEEECCCCCCHHHHHHHHHhhcC
Confidence 456666777776653 589999999999999999988765
No 468
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=94.07 E-value=0.24 Score=49.78 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAke 466 (1152)
++|.|++|+|||+++..+...
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999988653
No 469
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.05 E-value=0.088 Score=61.00 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..++|+||||+|||++|..++...
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~ 79 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEA 79 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999998877665
No 470
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.04 E-value=0.077 Score=55.98 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAke 466 (1152)
+|++|++|+|||++|..++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999876
No 471
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=94.02 E-value=0.55 Score=60.86 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHH
Q 036794 429 VAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARI 462 (1152)
Q Consensus 429 v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARa 462 (1152)
....|.+++... ..+++.||+|+|||+..=.
T Consensus 6 ~~~~i~~~l~~~---~~vIi~a~TGSGKTT~vpl 36 (819)
T TIGR01970 6 VLPALRDALAAH---PQVVLEAPPGAGKSTAVPL 36 (819)
T ss_pred HHHHHHHHHHcC---CcEEEECCCCCCHHHHHHH
Confidence 455666677553 3589999999999996543
No 472
>PHA00350 putative assembly protein
Probab=94.01 E-value=0.1 Score=61.95 Aligned_cols=60 Identities=13% Similarity=0.211 Sum_probs=39.7
Q ss_pred CceEEEEeCCCCCCHHH-----------------------HHHHHHHHhh-CCCCEEEEEEcCCCCcchHHHHccceE-E
Q 036794 524 QYRIFVFDDCDTLSPDS-----------------------WSAISKVVDR-APRRVVFILVSSSLDALPHIIISRCQK-F 578 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~ea-----------------------qnaLLklLEe-pp~~VifILaTN~~dkL~~aL~SR~qv-I 578 (1152)
...+|||||++.+-+.. -..++..+.+ -..+.-||++|-++..+...++..+.. +
T Consensus 81 ~gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HRH~G~DIiliTQ~~~~Id~~iR~lvE~~~ 160 (399)
T PHA00350 81 RGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNWDIILLTPNIRKIHSDIRAMIEMTY 160 (399)
T ss_pred CCCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHhcccCceEEEEeCCHHHhhHHHHHhhhheE
Confidence 56899999999873221 1234445543 335677999999998888888877664 4
Q ss_pred EecCC
Q 036794 579 FFPKM 583 (1152)
Q Consensus 579 ~F~~p 583 (1152)
.+...
T Consensus 161 ~h~k~ 165 (399)
T PHA00350 161 YHKKN 165 (399)
T ss_pred EEEee
Confidence 43333
No 473
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.99 E-value=0.1 Score=63.81 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=27.6
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~ 563 (1152)
++.|+++||+-. +..+....+.+.|.+...+..+|++|++
T Consensus 488 ~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 488 DAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 467999999865 5666777788888775445555555543
No 474
>PLN02840 tRNA dimethylallyltransferase
Probab=93.97 E-value=1 Score=54.05 Aligned_cols=28 Identities=36% Similarity=0.511 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
...++|.||+|+|||++|..||+.+++.
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~~~ 48 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLNGE 48 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCCCC
Confidence 3468999999999999999999998754
No 475
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.86 E-value=0.11 Score=56.00 Aligned_cols=44 Identities=20% Similarity=0.456 Sum_probs=32.3
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcc
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLDAL 567 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~dkL 567 (1152)
+..++++||... |.......|.++|.+......+|++|.+++.+
T Consensus 157 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 201 (221)
T cd03244 157 KSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTI 201 (221)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 467999999754 66777788888887754456778888876643
No 476
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.84 E-value=0.21 Score=53.43 Aligned_cols=44 Identities=14% Similarity=0.286 Sum_probs=32.7
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcc
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLDAL 567 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~dkL 567 (1152)
+..++++||.-. |.......|.++|.+......+|++|++++.+
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~ 187 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTI 187 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 468999999754 56777778888887754467788888877643
No 477
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=93.81 E-value=0.16 Score=51.73 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAke 466 (1152)
++|.|++|+|||+++..+...
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999887643
No 478
>PRK06696 uridine kinase; Validated
Probab=93.77 E-value=0.1 Score=56.84 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHh--CCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 427 NLVAQALSNAVMR--RKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 427 e~v~q~Lk~aL~~--gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+++.|...+.. ...+..+.|.|++|+||||+|+.|+..++.
T Consensus 4 ~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 4 KQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4566677766653 344568999999999999999999999853
No 479
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.76 E-value=0.27 Score=53.93 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
...++|+||.|.|||++.+.++..
T Consensus 30 ~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 30 SRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred CeEEEEECCCCCChHHHHHHHHHH
Confidence 457899999999999999998854
No 480
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.75 E-value=0.054 Score=54.48 Aligned_cols=25 Identities=40% Similarity=0.642 Sum_probs=23.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|+|++|+|||++|+.|++.++..
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~ 26 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLP 26 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 7899999999999999999998754
No 481
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.74 E-value=0.12 Score=57.53 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=47.9
Q ss_pred CCceEEEEeCCCC-CCHHHHHHHHHHHhhCC--CCEEEEEEcCCCCcchHHHHccceEEE------ecCCChhHHHHHHH
Q 036794 523 SQYRIFVFDDCDT-LSPDSWSAISKVVDRAP--RRVVFILVSSSLDALPHIIISRCQKFF------FPKMKDADIIYTLQ 593 (1152)
Q Consensus 523 a~~kVVIIDEID~-Ls~eaqnaLLklLEepp--~~VifILaTN~~dkL~~aL~SR~qvI~------F~~p~~~EI~eiL~ 593 (1152)
.+..++++||.-. |.......+.++|.+.. ....+|++|.+.+.+ ..+..++..+. -..-.+.++...+.
T Consensus 132 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~-~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~ 210 (246)
T cd03237 132 KDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMI-DYLADRLIVFEGEPSVNGVANPPQSLRSGMN 210 (246)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEcCCCeeEEEeCCchHHHHHHH
Confidence 3468999999754 56666677777766632 356788888876632 22334433221 01113344556666
Q ss_pred HHHHHcCCCCCHH
Q 036794 594 WIASKEGIEIDKD 606 (1152)
Q Consensus 594 ~iakkeGl~Id~d 606 (1152)
.++..+++.+..+
T Consensus 211 ~~l~~~~~~~~~~ 223 (246)
T cd03237 211 RFLKNLDITFRRD 223 (246)
T ss_pred HHHHHCCCEEecC
Confidence 7777666665443
No 482
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.73 E-value=0.11 Score=64.17 Aligned_cols=42 Identities=19% Similarity=0.389 Sum_probs=30.1
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
+..|+++||+-. |..+....+.+.|.+...+..+|++|++++
T Consensus 503 ~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~ 545 (588)
T PRK11174 503 PCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLE 545 (588)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChH
Confidence 467999999855 566666777777777545566677777764
No 483
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.68 E-value=0.71 Score=46.25 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAke 466 (1152)
++|.|++|+|||+++..+...
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988754
No 484
>PRK05973 replicative DNA helicase; Provisional
Probab=93.66 E-value=0.23 Score=55.24 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..+|+.|+||+|||+++-.|+...
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~ 88 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEA 88 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999887764
No 485
>PLN02772 guanylate kinase
Probab=93.64 E-value=0.52 Score=56.04 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..++|+||+|+||+++++.|.+..
T Consensus 136 k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 136 KPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred cEEEEECCCCCCHHHHHHHHhhhc
Confidence 368999999999999999998764
No 486
>PRK13947 shikimate kinase; Provisional
Probab=93.60 E-value=0.057 Score=55.65 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=24.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
.++|.|++|+|||++|+.||+.++..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~ 29 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGF 29 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 378999999999999999999998764
No 487
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.59 E-value=0.12 Score=60.98 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.||+||+|+|||++++.+++.+...
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~~~ 160 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVAAN 160 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 5999999999999999999988654
No 488
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.57 E-value=0.066 Score=55.96 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=23.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|+|+||+||||+|+.|++.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~ 29 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEP 29 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 468999999999999999999987654
No 489
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.57 E-value=0.4 Score=48.33 Aligned_cols=31 Identities=39% Similarity=0.510 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
+.+.+++|+|+=|.|||+++|.|++.++...
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~ 43 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGIDE 43 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--S
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCC
Confidence 3446899999999999999999999997653
No 490
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.57 E-value=0.15 Score=51.96 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..+..++|.|+.|+|||++++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 344579999999999999999999998764
No 491
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.56 E-value=0.063 Score=55.83 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=23.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+.++|.||||+||||+|+.+++.++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~ 30 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFT 30 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 368999999999999999999987644
No 492
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.56 E-value=0.046 Score=56.07 Aligned_cols=24 Identities=33% Similarity=0.623 Sum_probs=21.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
++|.||+|+||||+|+.+++.+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~ 24 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGA 24 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCC
Confidence 478999999999999999999763
No 493
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.51 E-value=0.13 Score=54.01 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=30.1
Q ss_pred CCceEEEEeCCCC-CCHHHHHHHHHHHhhCC-CCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDT-LSPDSWSAISKVVDRAP-RRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~-Ls~eaqnaLLklLEepp-~~VifILaTN~~d 565 (1152)
.+..++++||.-. |.......+.++|.+.. ....+|++|.+.+
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 165 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD 165 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4568999999754 66667777777776632 2467778887765
No 494
>PRK13808 adenylate kinase; Provisional
Probab=93.50 E-value=0.84 Score=53.32 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=23.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
++|+||||+|||++++.|++.++...
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~ 28 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQ 28 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce
Confidence 78999999999999999999987654
No 495
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=93.50 E-value=0.35 Score=49.21 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEcCCCchHHHHHHHHHHHHccc
Q 036794 448 FYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 448 L~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+.||||+|||++|+.||+.++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~ 23 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV 23 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE
T ss_pred CcCCCCCChHHHHHHHHHhcCcc
Confidence 57999999999999999998754
No 496
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=93.50 E-value=0.57 Score=49.68 Aligned_cols=43 Identities=19% Similarity=0.449 Sum_probs=30.0
Q ss_pred CCceEEEEeCCCC-CCHHHHHHHHHHHhhCCC-CEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDT-LSPDSWSAISKVVDRAPR-RVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~-Ls~eaqnaLLklLEepp~-~VifILaTN~~d 565 (1152)
.+..++++||... +.......+.++|.+... ...+|+++.+++
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~ 159 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE 159 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 3458999999875 566666777777765322 367888887765
No 497
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.50 E-value=0.65 Score=53.35 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 427 NLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 427 e~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+.....|..+++.+ ..+||+||+|+||||+++++...+.
T Consensus 119 ~~~~~~L~~~v~~~---~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 119 AAQRDVLREAVLAR---KNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred HHHHHHHHHHHHcC---CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34556777777643 3589999999999999999988764
No 498
>PRK14529 adenylate kinase; Provisional
Probab=93.49 E-value=0.31 Score=53.75 Aligned_cols=27 Identities=19% Similarity=0.572 Sum_probs=24.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccCC
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQSL 472 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~~ 472 (1152)
++|.||||+||||.++.|++.++....
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 789999999999999999999886543
No 499
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=93.47 E-value=0.41 Score=51.75 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=30.0
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCC-CEEEEEEcCCCC
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPR-RVVFILVSSSLD 565 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~-~VifILaTN~~d 565 (1152)
+.+++++||... +.......|.++|.+... ...+|++|.+.+
T Consensus 151 ~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~ 194 (213)
T cd03279 151 RLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE 194 (213)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH
Confidence 457999999864 566677777777776432 557788887765
No 500
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.47 E-value=0.35 Score=56.60 Aligned_cols=60 Identities=17% Similarity=0.279 Sum_probs=40.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHH
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNM 516 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a 516 (1152)
....++|+|+||+|||+++..++-....... ..+....+++++..+.+..+++.++.+.+
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~---------------~gg~~g~vlyIdtE~~f~~eRl~qia~~~ 181 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLD---------------QGGGEGKAMYIDTEGTFRPQRLIQIAERF 181 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchh---------------hCCCCceEEEEECCCCccHHHHHHHHHHc
Confidence 3457899999999999999888754321100 00111237777777778888888887664
Done!