Query 036794
Match_columns 1152
No_of_seqs 633 out of 4036
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 08:59:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jr3_A DNA polymerase III subu 100.0 5.8E-43 2E-47 392.6 36.6 352 407-759 2-358 (373)
2 2chq_A Replication factor C sm 100.0 2.3E-38 8E-43 346.7 28.8 310 407-759 3-315 (319)
3 1sxj_C Activator 1 40 kDa subu 100.0 1.1E-37 3.9E-42 349.8 33.4 309 408-759 12-329 (340)
4 1iqp_A RFCS; clamp loader, ext 100.0 3.4E-37 1.2E-41 338.7 31.4 310 407-759 11-323 (327)
5 1sxj_B Activator 1 37 kDa subu 100.0 2E-35 6.8E-40 324.1 32.2 307 408-759 8-318 (323)
6 1sxj_D Activator 1 41 kDa subu 100.0 1.5E-35 5.1E-40 330.1 31.6 313 405-758 21-351 (353)
7 1sxj_E Activator 1 40 kDa subu 100.0 4.8E-36 1.6E-40 335.6 26.8 322 409-758 2-350 (354)
8 3u61_B DNA polymerase accessor 100.0 1.2E-35 4.1E-40 329.8 28.3 299 406-759 11-319 (324)
9 1jr3_D DNA polymerase III, del 100.0 6.6E-35 2.3E-39 327.4 26.2 303 432-759 8-333 (343)
10 1a5t_A Delta prime, HOLB; zinc 100.0 2.6E-35 8.8E-40 331.5 21.3 308 425-759 6-321 (334)
11 2gno_A DNA polymerase III, gam 100.0 1.8E-30 6.1E-35 290.2 24.5 276 425-759 1-296 (305)
12 3pvs_A Replication-associated 100.0 7.5E-29 2.5E-33 290.4 27.7 257 408-692 13-298 (447)
13 1njg_A DNA polymerase III subu 100.0 2.4E-28 8.2E-33 252.6 25.6 241 406-646 8-249 (250)
14 2chg_A Replication factor C sm 99.9 1.2E-25 4.1E-30 230.5 27.0 220 408-647 4-225 (226)
15 1sxj_A Activator 1 95 kDa subu 99.9 1.8E-23 6.2E-28 248.5 20.9 234 406-664 24-293 (516)
16 3pfi_A Holliday junction ATP-d 99.9 1.7E-22 6E-27 225.1 22.7 212 406-647 14-253 (338)
17 3uk6_A RUVB-like 2; hexameric 99.9 8.6E-22 2.9E-26 221.4 22.3 238 408-648 30-330 (368)
18 1hqc_A RUVB; extended AAA-ATPa 99.9 2.6E-21 9E-26 213.4 25.5 208 411-647 2-237 (324)
19 2c9o_A RUVB-like 1; hexameric 99.9 6.1E-21 2.1E-25 223.4 21.9 124 526-650 297-439 (456)
20 1in4_A RUVB, holliday junction 99.8 2.3E-19 7.9E-24 201.7 24.8 213 406-648 10-250 (334)
21 3bos_A Putative DNA replicatio 99.8 3.4E-19 1.1E-23 186.3 17.1 209 408-646 14-241 (242)
22 3b9p_A CG5977-PA, isoform A; A 99.8 3.3E-18 1.1E-22 187.2 24.2 219 409-649 9-273 (297)
23 3vfd_A Spastin; ATPase, microt 99.8 1E-18 3.5E-23 200.1 20.4 201 407-629 101-329 (389)
24 1fnn_A CDC6P, cell division co 99.8 3E-17 1E-21 184.4 30.0 247 408-659 7-285 (389)
25 2v1u_A Cell division control p 99.8 4.6E-18 1.6E-22 190.2 22.6 234 408-648 9-276 (387)
26 3eie_A Vacuolar protein sortin 99.8 1.5E-18 5.2E-23 193.8 17.9 199 409-629 6-231 (322)
27 3syl_A Protein CBBX; photosynt 99.8 2E-18 7E-23 189.4 18.2 192 422-631 32-260 (309)
28 1lv7_A FTSH; alpha/beta domain 99.8 7.2E-18 2.5E-22 181.4 19.7 213 411-647 2-251 (257)
29 2qby_B CDC6 homolog 3, cell di 99.8 1.8E-17 6.2E-22 186.5 23.9 233 408-650 10-272 (384)
30 3d8b_A Fidgetin-like protein 1 99.8 4.3E-18 1.5E-22 193.3 18.6 199 410-630 73-299 (357)
31 4b4t_J 26S protease regulatory 99.8 1.2E-17 4E-22 192.9 22.2 208 416-647 143-388 (405)
32 1ofh_A ATP-dependent HSL prote 99.8 3E-18 1E-22 187.0 16.1 212 421-648 15-299 (310)
33 2qp9_X Vacuolar protein sortin 99.8 1.4E-17 4.8E-22 189.2 21.1 201 409-631 39-266 (355)
34 1xwi_A SKD1 protein; VPS4B, AA 99.7 5.8E-17 2E-21 181.8 23.0 196 414-631 5-228 (322)
35 1g8p_A Magnesium-chelatase 38 99.7 2E-17 6.8E-22 184.1 18.5 235 416-653 19-327 (350)
36 2qz4_A Paraplegin; AAA+, SPG7, 99.7 8.6E-17 2.9E-21 171.9 21.9 208 418-647 3-248 (262)
37 4b4t_I 26S protease regulatory 99.7 3.6E-17 1.2E-21 189.7 20.3 208 416-647 177-422 (437)
38 3h4m_A Proteasome-activating n 99.7 2.3E-17 8E-22 179.2 17.6 211 415-648 11-258 (285)
39 4b4t_M 26S protease regulatory 99.7 3.9E-17 1.3E-21 190.5 19.5 209 416-648 176-422 (434)
40 2qby_A CDC6 homolog 1, cell di 99.7 2.5E-16 8.7E-21 175.8 25.0 234 408-649 10-273 (386)
41 4b4t_L 26S protease subunit RP 99.7 7E-17 2.4E-21 188.5 21.1 207 418-647 178-421 (437)
42 2zan_A Vacuolar protein sortin 99.7 5.3E-17 1.8E-21 189.8 20.0 200 410-631 123-350 (444)
43 4b4t_H 26S protease regulatory 99.7 1E-16 3.6E-21 187.4 22.1 206 418-647 206-449 (467)
44 4fcw_A Chaperone protein CLPB; 99.7 8.5E-18 2.9E-22 184.4 12.2 202 420-631 16-276 (311)
45 4b4t_K 26S protease regulatory 99.7 1.4E-16 4.9E-21 185.5 22.2 206 418-647 169-413 (428)
46 2r44_A Uncharacterized protein 99.7 1.6E-16 5.5E-21 177.0 18.3 220 408-649 14-298 (331)
47 2z4s_A Chromosomal replication 99.7 1.5E-16 5.3E-21 185.8 18.4 210 419-649 103-333 (440)
48 2bjv_A PSP operon transcriptio 99.7 1E-16 3.5E-21 173.1 15.3 211 419-641 4-250 (265)
49 1l8q_A Chromosomal replication 99.7 4.3E-16 1.5E-20 173.2 18.8 183 419-632 9-214 (324)
50 2ce7_A Cell division protein F 99.7 3.6E-16 1.2E-20 184.6 19.1 208 417-648 12-256 (476)
51 1ojl_A Transcriptional regulat 99.7 3.2E-16 1.1E-20 174.6 17.4 211 421-643 2-247 (304)
52 3cf0_A Transitional endoplasmi 99.7 4.2E-16 1.4E-20 172.7 17.9 196 414-632 8-235 (301)
53 3pxg_A Negative regulator of g 99.6 5.3E-16 1.8E-20 182.6 14.8 199 408-631 167-383 (468)
54 2r62_A Cell division protease 99.6 3.6E-17 1.2E-21 176.4 1.7 212 414-648 4-253 (268)
55 1um8_A ATP-dependent CLP prote 99.6 1.3E-15 4.4E-20 173.2 13.9 211 421-647 21-364 (376)
56 3pxi_A Negative regulator of g 99.6 1.6E-15 5.4E-20 188.0 15.6 188 420-630 490-721 (758)
57 1r6b_X CLPA protein; AAA+, N-t 99.6 1.7E-15 5.7E-20 187.4 15.6 197 421-630 458-712 (758)
58 3m6a_A ATP-dependent protease 99.6 1.6E-15 5.6E-20 181.6 13.7 211 420-648 80-341 (543)
59 3te6_A Regulatory protein SIR3 99.6 7E-15 2.4E-19 165.5 17.7 217 410-632 11-285 (318)
60 2dhr_A FTSH; AAA+ protein, hex 99.6 3.5E-15 1.2E-19 177.1 15.5 208 416-647 26-270 (499)
61 1qvr_A CLPB protein; coiled co 99.6 8.7E-16 3E-20 192.8 10.5 202 420-631 557-817 (854)
62 1d2n_A N-ethylmaleimide-sensit 99.6 4E-15 1.4E-19 161.5 13.7 189 420-634 32-250 (272)
63 3hu3_A Transitional endoplasmi 99.6 9.6E-15 3.3E-19 173.0 18.1 197 413-632 196-421 (489)
64 1ixz_A ATP-dependent metallopr 99.6 2.6E-14 9E-19 153.3 18.9 209 413-645 8-253 (254)
65 1jbk_A CLPB protein; beta barr 99.6 3.2E-15 1.1E-19 149.4 10.2 165 408-592 9-194 (195)
66 1iy2_A ATP-dependent metallopr 99.6 1.4E-13 4.9E-18 150.1 21.0 206 416-645 35-277 (278)
67 3k1j_A LON protease, ATP-depen 99.6 8.4E-15 2.9E-19 177.4 12.2 226 412-646 32-373 (604)
68 1r6b_X CLPA protein; AAA+, N-t 99.5 2.6E-14 9E-19 176.8 16.3 223 408-647 173-432 (758)
69 3pxi_A Negative regulator of g 99.5 2.3E-14 7.9E-19 177.5 15.5 198 408-630 167-382 (758)
70 3hws_A ATP-dependent CLP prote 99.5 5E-15 1.7E-19 167.8 8.4 191 422-631 16-320 (363)
71 1qvr_A CLPB protein; coiled co 99.5 2.3E-14 7.8E-19 180.0 14.3 206 407-632 156-391 (854)
72 2p65_A Hypothetical protein PF 99.5 1.4E-14 4.9E-19 145.0 8.0 158 407-584 8-187 (187)
73 3cf2_A TER ATPase, transitiona 99.5 8.2E-14 2.8E-18 173.1 11.9 190 417-630 200-419 (806)
74 1ny5_A Transcriptional regulat 99.5 1.5E-13 5.1E-18 158.0 12.4 213 420-644 136-383 (387)
75 3cf2_A TER ATPase, transitiona 99.4 8.6E-14 2.9E-18 172.9 9.7 177 418-617 474-681 (806)
76 1w5s_A Origin recognition comp 99.4 3.3E-13 1.1E-17 153.0 12.3 229 410-647 14-292 (412)
77 3dzd_A Transcriptional regulat 99.4 3.7E-13 1.3E-17 153.9 11.9 200 421-633 129-361 (368)
78 2x8a_A Nuclear valosin-contain 99.4 8.2E-12 2.8E-16 137.2 20.7 204 417-648 6-264 (274)
79 3t15_A Ribulose bisphosphate c 99.4 4.1E-12 1.4E-16 140.5 18.2 156 441-617 34-217 (293)
80 1g41_A Heat shock protein HSLU 99.4 2.6E-12 9.1E-17 150.3 15.2 125 525-649 251-434 (444)
81 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 5.1E-11 1.8E-15 141.6 22.4 211 421-650 22-287 (500)
82 3n70_A Transport activator; si 99.3 2.4E-12 8.2E-17 127.7 8.1 133 422-583 2-144 (145)
83 3f9v_A Minichromosome maintena 99.3 1.4E-12 4.9E-17 157.9 6.6 211 420-647 294-586 (595)
84 3co5_A Putative two-component 99.2 1.2E-11 4E-16 122.5 6.5 129 422-583 5-142 (143)
85 1ypw_A Transitional endoplasmi 99.1 1.7E-10 5.8E-15 144.3 12.3 183 414-619 197-407 (806)
86 1ypw_A Transitional endoplasmi 99.1 7.8E-13 2.7E-17 165.3 -9.0 192 416-630 472-695 (806)
87 2qen_A Walker-type ATPase; unk 99.0 2E-08 6.7E-13 110.7 23.1 196 419-628 10-248 (350)
88 3ec2_A DNA replication protein 98.9 5.9E-09 2E-13 106.0 12.7 121 413-565 2-144 (180)
89 2fna_A Conserved hypothetical 98.9 3.9E-08 1.3E-12 108.4 17.3 198 419-629 11-253 (357)
90 3f8t_A Predicted ATPase involv 98.7 1.8E-08 6.3E-13 118.3 8.7 171 423-614 215-426 (506)
91 1u0j_A DNA replication protein 98.7 4.4E-08 1.5E-12 107.8 11.0 138 429-605 89-259 (267)
92 2w58_A DNAI, primosome compone 98.7 5.6E-08 1.9E-12 100.2 10.1 60 410-469 14-80 (202)
93 3upu_A ATP-dependent DNA helic 98.5 3.9E-07 1.3E-11 106.8 13.2 132 405-562 8-163 (459)
94 1tue_A Replication protein E1; 98.5 1.9E-07 6.6E-12 99.2 7.7 121 427-583 42-179 (212)
95 4akg_A Glutathione S-transfera 98.4 8.6E-07 2.9E-11 122.1 14.0 139 434-598 1261-1433(2695)
96 2kjq_A DNAA-related protein; s 98.4 2.7E-07 9.4E-12 92.5 5.4 118 419-576 15-140 (149)
97 2qgz_A Helicase loader, putati 98.3 4.9E-07 1.7E-11 101.0 6.9 58 411-468 114-177 (308)
98 4akg_A Glutathione S-transfera 98.0 8.3E-05 2.8E-09 102.9 20.8 168 428-630 633-837 (2695)
99 3vkg_A Dynein heavy chain, cyt 97.9 7.3E-05 2.5E-09 104.2 17.1 164 445-631 1306-1525(3245)
100 1z6t_A APAF-1, apoptotic prote 97.7 0.00023 7.8E-09 85.0 13.9 194 416-629 119-331 (591)
101 1ye8_A Protein THEP1, hypothet 97.6 0.00024 8.4E-09 73.1 11.7 69 523-593 98-173 (178)
102 1jql_B DNA polymerase III, del 97.6 0.0005 1.7E-08 68.1 12.7 124 433-580 9-139 (140)
103 2r2a_A Uncharacterized protein 97.5 0.00011 3.9E-09 77.3 7.0 61 523-583 86-153 (199)
104 2orw_A Thymidine kinase; TMTK, 97.4 7.5E-05 2.6E-09 77.3 4.5 52 523-577 75-132 (184)
105 3sfz_A APAF-1, apoptotic pepti 97.4 0.0015 5E-08 83.8 17.3 194 415-625 118-327 (1249)
106 3vkg_A Dynein heavy chain, cyt 97.4 0.0026 9E-08 89.1 20.7 170 428-632 592-799 (3245)
107 2a5y_B CED-4; apoptosis; HET: 97.4 0.0013 4.5E-08 78.6 14.6 185 424-623 131-334 (549)
108 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.0025 8.6E-08 72.1 11.4 23 444-466 124-146 (331)
109 2b8t_A Thymidine kinase; deoxy 97.0 0.0011 3.8E-08 71.1 7.9 107 443-562 12-124 (223)
110 3e1s_A Exodeoxyribonuclease V, 97.0 0.00094 3.2E-08 80.8 7.9 95 443-562 204-314 (574)
111 2fz4_A DNA repair protein RAD2 96.8 0.0055 1.9E-07 65.4 11.6 23 445-467 110-132 (237)
112 1vt4_I APAF-1 related killer D 96.6 0.021 7.1E-07 73.3 16.4 44 423-466 130-173 (1221)
113 2ze6_A Isopentenyl transferase 96.5 0.013 4.5E-07 63.2 11.8 26 445-470 3-28 (253)
114 1w36_D RECD, exodeoxyribonucle 96.5 0.0038 1.3E-07 75.9 8.4 42 524-569 262-303 (608)
115 2r8r_A Sensor protein; KDPD, P 96.4 0.018 6.2E-07 62.0 12.3 164 444-624 7-202 (228)
116 1g5t_A COB(I)alamin adenosyltr 96.4 0.0041 1.4E-07 65.6 6.9 123 445-576 30-172 (196)
117 3lw7_A Adenylate kinase relate 96.3 0.025 8.7E-07 55.2 11.4 25 445-470 3-27 (179)
118 2cvh_A DNA repair and recombin 96.3 0.026 9E-07 57.9 12.0 23 443-465 20-42 (220)
119 1ly1_A Polynucleotide kinase; 96.2 0.0065 2.2E-07 60.4 6.8 22 444-465 3-24 (181)
120 2i3b_A HCR-ntpase, human cance 96.2 0.026 8.9E-07 58.7 11.6 71 522-593 103-181 (189)
121 3kb2_A SPBC2 prophage-derived 96.0 0.019 6.5E-07 56.6 9.1 26 445-470 3-28 (173)
122 3cmw_A Protein RECA, recombina 95.9 0.013 4.4E-07 78.6 9.0 26 444-469 1083-1108(1706)
123 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.035 1.2E-06 57.1 10.6 25 443-467 23-47 (235)
124 3cmu_A Protein RECA, recombina 95.8 0.008 2.7E-07 81.4 6.8 26 443-468 1427-1452(2050)
125 4a74_A DNA repair and recombin 95.8 0.022 7.6E-07 58.8 8.8 26 443-468 25-50 (231)
126 3dl0_A Adenylate kinase; phosp 95.8 0.11 3.9E-06 53.5 14.1 25 446-470 3-27 (216)
127 3llm_A ATP-dependent RNA helic 95.7 0.082 2.8E-06 55.8 13.0 21 444-464 77-97 (235)
128 2iut_A DNA translocase FTSK; n 95.7 0.13 4.5E-06 62.1 16.1 68 525-592 344-419 (574)
129 2zr9_A Protein RECA, recombina 95.6 0.044 1.5E-06 62.2 10.9 85 443-537 61-152 (349)
130 3crm_A TRNA delta(2)-isopenten 95.6 0.0059 2E-07 69.0 3.6 28 443-470 5-32 (323)
131 1s96_A Guanylate kinase, GMP k 95.6 0.081 2.8E-06 56.1 12.2 56 525-593 108-163 (219)
132 3zvl_A Bifunctional polynucleo 95.6 0.025 8.6E-07 65.5 8.9 29 442-470 257-285 (416)
133 2z0h_A DTMP kinase, thymidylat 95.5 0.15 5.1E-06 51.4 13.5 24 445-468 2-25 (197)
134 1xx6_A Thymidine kinase; NESG, 95.4 0.01 3.5E-07 62.0 4.6 104 443-562 8-116 (191)
135 3kl4_A SRP54, signal recogniti 95.3 0.067 2.3E-06 62.7 11.5 27 443-469 97-123 (433)
136 3b6e_A Interferon-induced heli 95.3 0.019 6.5E-07 58.5 6.2 23 445-467 50-72 (216)
137 2px0_A Flagellar biosynthesis 95.3 0.13 4.5E-06 57.0 13.1 26 443-468 105-130 (296)
138 3hr8_A Protein RECA; alpha and 95.3 0.084 2.9E-06 60.3 11.7 26 443-468 61-86 (356)
139 3dm5_A SRP54, signal recogniti 95.2 0.089 3E-06 61.8 12.0 152 443-601 100-267 (443)
140 3jvv_A Twitching mobility prot 95.1 0.086 2.9E-06 60.1 11.4 125 418-565 104-232 (356)
141 1qhx_A CPT, protein (chloramph 95.1 0.011 3.9E-07 59.0 3.7 27 443-469 3-29 (178)
142 1u94_A RECA protein, recombina 95.1 0.066 2.2E-06 61.1 10.4 85 443-537 63-154 (356)
143 3fb4_A Adenylate kinase; psych 95.1 0.13 4.3E-06 53.1 11.5 25 446-470 3-27 (216)
144 1n0w_A DNA repair protein RAD5 95.1 0.06 2E-06 56.1 9.1 25 443-467 24-48 (243)
145 1cr0_A DNA primase/helicase; R 95.0 0.04 1.4E-06 60.1 8.0 28 442-469 34-61 (296)
146 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.11 3.8E-06 56.0 11.2 25 444-468 5-29 (260)
147 3b85_A Phosphate starvation-in 95.0 0.029 1E-06 59.1 6.5 42 414-466 4-45 (208)
148 1ltq_A Polynucleotide kinase; 95.0 0.08 2.7E-06 57.6 10.1 24 444-467 3-26 (301)
149 4dhe_A Probable GTP-binding pr 94.9 0.21 7E-06 51.3 12.7 118 445-566 31-156 (223)
150 3h1t_A Type I site-specific re 94.9 0.04 1.4E-06 66.1 8.0 42 426-469 183-224 (590)
151 3trf_A Shikimate kinase, SK; a 94.8 0.018 6E-07 58.0 4.1 28 443-470 5-32 (185)
152 2j9r_A Thymidine kinase; TK1, 94.8 0.016 5.5E-07 61.9 3.9 36 524-562 101-136 (214)
153 1xp8_A RECA protein, recombina 94.7 0.16 5.6E-06 58.1 12.3 85 443-537 74-165 (366)
154 1qde_A EIF4A, translation init 94.6 0.041 1.4E-06 56.9 6.4 42 523-564 154-196 (224)
155 1w4r_A Thymidine kinase; type 94.5 0.06 2.1E-06 56.7 7.3 28 442-469 19-47 (195)
156 1t6n_A Probable ATP-dependent 94.5 0.34 1.2E-05 49.9 12.9 43 522-564 156-200 (220)
157 2gxq_A Heat resistant RNA depe 94.4 0.24 8.2E-06 50.3 11.5 43 523-565 143-186 (207)
158 1nrj_B SR-beta, signal recogni 94.4 0.15 5E-06 52.3 10.0 113 444-566 13-132 (218)
159 3llu_A RAS-related GTP-binding 94.3 0.27 9.2E-06 49.8 11.5 112 445-567 22-142 (196)
160 2rhm_A Putative kinase; P-loop 94.3 0.028 9.6E-07 56.6 4.1 27 443-469 5-31 (193)
161 3iij_A Coilin-interacting nucl 94.1 0.028 9.5E-07 56.5 3.7 27 444-470 12-38 (180)
162 1kht_A Adenylate kinase; phosp 94.1 0.029 9.8E-07 56.2 3.8 25 444-468 4-28 (192)
163 1via_A Shikimate kinase; struc 94.1 0.026 9E-07 56.5 3.4 26 445-470 6-31 (175)
164 3vaa_A Shikimate kinase, SK; s 94.1 0.03 1E-06 57.6 3.9 27 444-470 26-52 (199)
165 1kag_A SKI, shikimate kinase I 94.0 0.026 9E-07 56.0 3.3 26 444-469 5-30 (173)
166 1vma_A Cell division protein F 94.0 0.11 3.9E-06 57.9 8.7 27 443-469 104-130 (306)
167 3bor_A Human initiation factor 94.0 0.037 1.3E-06 58.4 4.5 42 523-564 172-214 (237)
168 1zuh_A Shikimate kinase; alpha 94.0 0.033 1.1E-06 55.3 3.9 26 445-470 9-34 (168)
169 1nks_A Adenylate kinase; therm 93.9 0.029 9.9E-07 56.2 3.4 24 445-468 3-26 (194)
170 1ex7_A Guanylate kinase; subst 93.9 0.2 7E-06 52.0 9.8 23 445-467 3-25 (186)
171 2cdn_A Adenylate kinase; phosp 93.9 0.04 1.4E-06 56.5 4.4 30 441-470 18-47 (201)
172 1tev_A UMP-CMP kinase; ploop, 93.9 0.035 1.2E-06 55.7 3.9 28 443-470 3-30 (196)
173 3io5_A Recombination and repai 93.9 0.23 7.8E-06 56.2 10.8 88 444-537 29-124 (333)
174 3foz_A TRNA delta(2)-isopenten 93.9 0.15 5E-06 57.5 9.3 30 441-470 8-37 (316)
175 2iyv_A Shikimate kinase, SK; t 93.9 0.033 1.1E-06 56.1 3.7 26 445-470 4-29 (184)
176 3cm0_A Adenylate kinase; ATP-b 93.7 0.039 1.3E-06 55.4 3.8 27 444-470 5-31 (186)
177 1pzn_A RAD51, DNA repair and r 93.6 0.21 7E-06 56.6 10.1 25 443-467 131-155 (349)
178 1e6c_A Shikimate kinase; phosp 93.6 0.038 1.3E-06 54.7 3.5 26 445-470 4-29 (173)
179 3lda_A DNA repair protein RAD5 93.6 0.17 5.7E-06 58.7 9.3 24 443-466 178-201 (400)
180 3uie_A Adenylyl-sulfate kinase 93.5 0.069 2.4E-06 54.9 5.5 30 439-468 21-50 (200)
181 1mv5_A LMRA, multidrug resista 93.5 0.041 1.4E-06 59.1 3.9 24 444-467 29-52 (243)
182 2c95_A Adenylate kinase 1; tra 93.5 0.047 1.6E-06 55.1 4.0 27 444-470 10-36 (196)
183 3exa_A TRNA delta(2)-isopenten 93.5 0.18 6.1E-06 56.9 9.0 27 444-470 4-30 (322)
184 2plr_A DTMP kinase, probable t 93.5 0.045 1.5E-06 55.7 3.9 26 444-469 5-30 (213)
185 2p5t_B PEZT; postsegregational 93.5 0.029 9.9E-07 60.2 2.6 28 441-468 30-57 (253)
186 2bwj_A Adenylate kinase 5; pho 93.5 0.044 1.5E-06 55.4 3.8 27 444-470 13-39 (199)
187 1vec_A ATP-dependent RNA helic 93.4 0.34 1.2E-05 49.2 10.4 42 523-564 145-187 (206)
188 3t61_A Gluconokinase; PSI-biol 93.4 0.041 1.4E-06 56.4 3.5 28 443-470 18-45 (202)
189 2r6a_A DNAB helicase, replicat 93.4 0.15 5.3E-06 59.5 8.8 27 442-468 202-228 (454)
190 2vli_A Antibiotic resistance p 93.4 0.032 1.1E-06 55.8 2.7 27 444-470 6-32 (183)
191 1qf9_A UMP/CMP kinase, protein 93.4 0.05 1.7E-06 54.4 4.0 28 443-470 6-33 (194)
192 2eyu_A Twitching motility prot 93.4 0.25 8.5E-06 53.7 9.8 28 442-469 24-51 (261)
193 1aky_A Adenylate kinase; ATP:A 93.3 0.052 1.8E-06 56.5 4.1 28 443-470 4-31 (220)
194 3vkw_A Replicase large subunit 93.2 0.085 2.9E-06 62.0 6.1 24 525-548 235-258 (446)
195 3tlx_A Adenylate kinase 2; str 93.2 0.092 3.1E-06 56.1 5.9 30 441-470 27-56 (243)
196 1gvn_B Zeta; postsegregational 93.2 0.036 1.2E-06 61.0 2.8 27 442-468 32-58 (287)
197 2pt5_A Shikimate kinase, SK; a 93.1 0.056 1.9E-06 53.4 3.9 26 445-470 2-27 (168)
198 1y63_A LMAJ004144AAA protein; 93.1 0.055 1.9E-06 55.0 3.8 27 444-470 11-38 (184)
199 3fmo_B ATP-dependent RNA helic 93.0 0.38 1.3E-05 53.0 10.8 41 523-563 234-276 (300)
200 2wwf_A Thymidilate kinase, put 93.0 0.058 2E-06 55.2 3.9 28 443-470 10-37 (212)
201 1z0j_A RAB-22, RAS-related pro 93.0 0.27 9.2E-06 47.5 8.5 22 445-466 8-29 (170)
202 1kao_A RAP2A; GTP-binding prot 93.0 0.68 2.3E-05 44.3 11.3 22 445-466 5-26 (167)
203 2orv_A Thymidine kinase; TP4A 92.9 0.36 1.2E-05 52.2 10.0 37 523-563 89-125 (234)
204 2fwr_A DNA repair protein RAD2 92.9 0.27 9.3E-06 56.8 9.8 23 445-467 110-132 (472)
205 4eun_A Thermoresistant glucoki 92.9 0.065 2.2E-06 55.1 4.1 28 442-469 28-55 (200)
206 1knq_A Gluconate kinase; ALFA/ 92.8 0.063 2.2E-06 53.5 3.8 27 443-469 8-34 (175)
207 3bc1_A RAS-related protein RAB 92.8 0.35 1.2E-05 47.7 9.2 22 445-466 13-34 (195)
208 2jaq_A Deoxyguanosine kinase; 92.8 0.063 2.2E-06 54.3 3.7 26 445-470 2-27 (205)
209 2ius_A DNA translocase FTSK; n 92.8 0.2 6.7E-06 59.9 8.5 68 526-593 299-374 (512)
210 1u8z_A RAS-related protein RAL 92.7 0.5 1.7E-05 45.3 9.8 22 445-466 6-27 (168)
211 1nn5_A Similar to deoxythymidy 92.7 0.071 2.4E-06 54.6 4.0 28 443-470 9-36 (215)
212 3cmu_A Protein RECA, recombina 92.6 0.097 3.3E-06 71.2 6.2 25 444-468 1082-1106(2050)
213 1z0f_A RAB14, member RAS oncog 92.6 0.21 7.3E-06 48.7 7.2 22 445-466 17-38 (179)
214 1ek0_A Protein (GTP-binding pr 92.6 0.4 1.4E-05 46.2 9.0 22 445-466 5-26 (170)
215 1zak_A Adenylate kinase; ATP:A 92.6 0.061 2.1E-06 56.0 3.4 27 444-470 6-32 (222)
216 1ak2_A Adenylate kinase isoenz 92.6 0.08 2.7E-06 55.8 4.3 27 444-470 17-43 (233)
217 3tkl_A RAS-related protein RAB 92.5 0.37 1.2E-05 48.0 8.9 22 445-466 18-39 (196)
218 1zd8_A GTP:AMP phosphotransfer 92.5 0.063 2.2E-06 56.2 3.4 27 444-470 8-34 (227)
219 1ukz_A Uridylate kinase; trans 92.5 0.076 2.6E-06 54.3 3.9 26 444-469 16-41 (203)
220 1v5w_A DMC1, meiotic recombina 92.5 0.22 7.5E-06 56.1 8.0 25 443-467 122-146 (343)
221 2dyk_A GTP-binding protein; GT 92.5 0.48 1.7E-05 45.4 9.4 22 445-466 3-24 (161)
222 1zp6_A Hypothetical protein AT 92.5 0.066 2.2E-06 54.0 3.4 24 443-466 9-32 (191)
223 3p32_A Probable GTPase RV1496/ 92.5 8.6 0.00029 43.2 21.1 29 440-468 76-104 (355)
224 2a9k_A RAS-related protein RAL 92.4 0.64 2.2E-05 45.5 10.5 22 445-466 20-41 (187)
225 1r2q_A RAS-related protein RAB 92.4 0.4 1.4E-05 46.2 8.8 22 445-466 8-29 (170)
226 1ky3_A GTP-binding protein YPT 92.4 0.22 7.4E-06 48.7 6.9 22 445-466 10-31 (182)
227 1rif_A DAR protein, DNA helica 92.4 0.46 1.6E-05 51.2 10.1 34 429-466 118-151 (282)
228 2pl3_A Probable ATP-dependent 92.3 0.52 1.8E-05 49.2 10.2 40 523-562 170-210 (236)
229 1hv8_A Putative ATP-dependent 92.3 0.61 2.1E-05 51.0 11.1 43 523-565 146-189 (367)
230 2bov_A RAla, RAS-related prote 92.3 0.97 3.3E-05 45.3 11.8 22 445-466 16-37 (206)
231 3thx_B DNA mismatch repair pro 92.1 0.27 9.3E-06 62.6 9.1 24 443-466 673-696 (918)
232 2z43_A DNA repair and recombin 92.1 0.13 4.3E-06 57.4 5.5 25 443-467 107-131 (324)
233 3be4_A Adenylate kinase; malar 92.1 0.08 2.7E-06 55.2 3.6 26 445-470 7-32 (217)
234 3c8u_A Fructokinase; YP_612366 92.1 0.099 3.4E-06 54.1 4.3 40 429-468 7-47 (208)
235 2yvu_A Probable adenylyl-sulfa 92.1 0.097 3.3E-06 52.9 4.1 28 442-469 12-39 (186)
236 3pey_A ATP-dependent RNA helic 92.1 0.58 2E-05 51.7 10.7 43 522-564 143-187 (395)
237 2ga8_A Hypothetical 39.9 kDa p 92.0 0.16 5.4E-06 58.2 6.1 46 425-471 3-52 (359)
238 1e4v_A Adenylate kinase; trans 92.0 0.081 2.8E-06 54.9 3.5 25 446-470 3-27 (214)
239 2j37_W Signal recognition part 91.9 0.53 1.8E-05 56.2 10.7 27 443-469 101-127 (504)
240 1svi_A GTP-binding protein YSX 91.9 0.65 2.2E-05 46.3 9.9 23 444-466 24-46 (195)
241 3b5x_A Lipid A export ATP-bind 91.9 0.19 6.4E-06 60.7 6.9 42 524-565 498-540 (582)
242 1cke_A CK, MSSA, protein (cyti 91.9 0.093 3.2E-06 54.4 3.7 27 444-470 6-32 (227)
243 2pbr_A DTMP kinase, thymidylat 91.8 0.096 3.3E-06 52.5 3.7 24 445-468 2-25 (195)
244 1m7g_A Adenylylsulfate kinase; 91.8 0.15 5.2E-06 52.7 5.3 29 440-468 22-50 (211)
245 1xti_A Probable ATP-dependent 91.8 0.63 2.2E-05 51.6 10.7 42 522-563 150-193 (391)
246 2bbw_A Adenylate kinase 4, AK4 91.8 0.099 3.4E-06 55.5 3.9 28 443-470 27-54 (246)
247 3umf_A Adenylate kinase; rossm 91.8 0.11 3.6E-06 55.4 4.1 29 442-470 28-56 (217)
248 1rz3_A Hypothetical protein rb 91.8 0.2 6.7E-06 51.7 6.0 41 428-468 5-47 (201)
249 1svm_A Large T antigen; AAA+ f 91.8 0.19 6.4E-06 57.9 6.4 30 439-468 165-194 (377)
250 2ce2_X GTPase HRAS; signaling 91.7 0.26 9.1E-06 47.0 6.5 22 445-466 5-26 (166)
251 2v3c_C SRP54, signal recogniti 91.7 0.25 8.6E-06 57.8 7.5 25 444-468 100-124 (432)
252 1c1y_A RAS-related protein RAP 91.7 0.67 2.3E-05 44.5 9.4 22 445-466 5-26 (167)
253 3cmw_A Protein RECA, recombina 91.7 0.55 1.9E-05 63.2 11.5 84 444-537 733-823 (1706)
254 2xb4_A Adenylate kinase; ATP-b 91.6 0.1 3.5E-06 54.8 3.8 26 445-470 2-27 (223)
255 2qor_A Guanylate kinase; phosp 91.6 0.08 2.8E-06 54.6 2.9 25 444-468 13-37 (204)
256 1wb9_A DNA mismatch repair pro 91.6 0.36 1.2E-05 60.7 9.2 24 444-467 608-631 (800)
257 1s2m_A Putative ATP-dependent 91.6 1.6 5.6E-05 48.6 13.8 40 522-561 161-201 (400)
258 1q57_A DNA primase/helicase; d 91.6 1.3 4.5E-05 52.1 13.6 27 443-469 242-268 (503)
259 1ewq_A DNA mismatch repair pro 91.5 0.19 6.4E-06 62.9 6.5 25 443-467 576-600 (765)
260 2pez_A Bifunctional 3'-phospho 91.5 0.12 4.2E-06 51.8 4.0 26 442-467 4-29 (179)
261 4b3f_X DNA-binding protein smu 91.5 0.16 5.5E-06 61.9 5.8 40 426-468 191-230 (646)
262 3fht_A ATP-dependent RNA helic 91.5 0.45 1.5E-05 53.1 9.0 42 523-564 167-210 (412)
263 3sop_A Neuronal-specific septi 91.4 2.7 9.3E-05 45.7 15.0 25 445-469 4-28 (270)
264 3lxw_A GTPase IMAP family memb 91.4 1.7 5.9E-05 46.3 13.2 21 445-465 23-43 (247)
265 2efe_B Small GTP-binding prote 91.4 0.31 1E-05 47.9 6.8 22 445-466 14-35 (181)
266 2bdt_A BH3686; alpha-beta prot 91.3 0.11 3.6E-06 52.6 3.4 24 444-467 3-26 (189)
267 3sr0_A Adenylate kinase; phosp 91.3 0.12 4E-06 54.5 3.8 26 445-470 2-27 (206)
268 3ber_A Probable ATP-dependent 91.3 0.4 1.4E-05 51.1 8.0 40 523-562 185-225 (249)
269 2v6i_A RNA helicase; membrane, 91.3 0.42 1.4E-05 55.4 8.7 17 444-460 3-19 (431)
270 2pt7_A CAG-ALFA; ATPase, prote 91.2 0.69 2.4E-05 52.0 10.1 38 428-468 159-196 (330)
271 2xau_A PRE-mRNA-splicing facto 91.1 0.31 1.1E-05 60.9 8.0 32 432-466 101-132 (773)
272 1wms_A RAB-9, RAB9, RAS-relate 91.1 0.18 6.1E-06 49.4 4.7 22 445-466 9-30 (177)
273 3dkp_A Probable ATP-dependent 91.1 1.2 4E-05 46.7 11.3 43 522-564 173-221 (245)
274 3ake_A Cytidylate kinase; CMP 91.0 0.14 4.7E-06 52.1 3.9 26 445-470 4-29 (208)
275 3q85_A GTP-binding protein REM 91.0 0.64 2.2E-05 45.0 8.5 20 446-465 5-24 (169)
276 2v54_A DTMP kinase, thymidylat 91.0 0.12 4E-06 52.6 3.3 25 443-467 4-28 (204)
277 3tau_A Guanylate kinase, GMP k 90.9 0.14 4.7E-06 53.2 3.9 27 442-468 7-33 (208)
278 1z2a_A RAS-related protein RAB 90.9 0.14 4.8E-06 49.4 3.7 22 445-466 7-28 (168)
279 3iuy_A Probable ATP-dependent 90.9 0.25 8.5E-06 51.3 5.8 42 522-563 165-207 (228)
280 1kgd_A CASK, peripheral plasma 90.9 0.13 4.4E-06 52.1 3.5 25 444-468 6-30 (180)
281 2bme_A RAB4A, RAS-related prot 90.9 1.1 3.9E-05 44.0 10.4 22 445-466 12-33 (186)
282 2oil_A CATX-8, RAS-related pro 90.8 0.81 2.8E-05 45.7 9.4 22 445-466 27-48 (193)
283 3q72_A GTP-binding protein RAD 90.8 0.24 8.1E-06 47.9 5.2 20 445-464 4-23 (166)
284 1r8s_A ADP-ribosylation factor 90.8 3.2 0.00011 39.7 13.3 22 446-467 3-24 (164)
285 1ls1_A Signal recognition part 90.8 0.58 2E-05 51.7 9.0 27 443-469 98-124 (295)
286 2oxc_A Probable ATP-dependent 90.8 0.49 1.7E-05 49.4 8.0 17 445-461 63-79 (230)
287 3tr0_A Guanylate kinase, GMP k 90.8 0.15 5E-06 51.9 3.8 25 443-467 7-31 (205)
288 2lkc_A Translation initiation 90.8 2.3 8E-05 41.3 12.4 22 444-465 9-30 (178)
289 3bh0_A DNAB-like replicative h 90.8 1.1 3.9E-05 49.6 11.3 28 441-468 66-93 (315)
290 1q0u_A Bstdead; DEAD protein, 90.7 0.47 1.6E-05 49.0 7.7 45 523-567 149-195 (219)
291 4dsu_A GTPase KRAS, isoform 2B 90.7 0.4 1.4E-05 47.3 6.9 22 445-466 6-27 (189)
292 2j41_A Guanylate kinase; GMP, 90.7 0.15 5.2E-06 51.8 3.9 25 443-467 6-30 (207)
293 3dz8_A RAS-related protein RAB 90.7 0.76 2.6E-05 46.0 8.9 23 445-467 25-47 (191)
294 3clv_A RAB5 protein, putative; 90.7 0.32 1.1E-05 48.2 6.1 22 445-466 9-30 (208)
295 2erx_A GTP-binding protein DI- 90.6 0.68 2.3E-05 44.6 8.3 21 445-465 5-25 (172)
296 2ged_A SR-beta, signal recogni 90.6 1.8 6.1E-05 43.0 11.6 23 444-466 49-71 (193)
297 4a1f_A DNAB helicase, replicat 90.6 0.32 1.1E-05 55.1 6.7 28 441-468 44-71 (338)
298 3lxx_A GTPase IMAP family memb 90.6 0.51 1.7E-05 49.6 7.9 23 444-466 30-52 (239)
299 2hup_A RAS-related protein RAB 90.5 0.36 1.2E-05 49.2 6.5 22 445-466 31-52 (201)
300 3ly5_A ATP-dependent RNA helic 90.5 0.034 1.2E-06 59.9 -1.3 41 523-563 200-241 (262)
301 3kkq_A RAS-related protein M-R 90.3 0.34 1.1E-05 47.9 5.9 22 445-466 20-41 (183)
302 2fn4_A P23, RAS-related protei 90.3 1 3.5E-05 43.9 9.3 22 445-466 11-32 (181)
303 2il1_A RAB12; G-protein, GDP, 90.3 0.38 1.3E-05 48.5 6.4 22 445-466 28-49 (192)
304 1odf_A YGR205W, hypothetical 3 90.3 0.32 1.1E-05 53.8 6.2 29 441-469 29-57 (290)
305 3tw8_B RAS-related protein RAB 90.3 0.08 2.7E-06 51.9 1.3 21 445-465 11-31 (181)
306 1wp9_A ATP-dependent RNA helic 90.3 0.58 2E-05 52.6 8.5 23 445-467 25-47 (494)
307 3fmp_B ATP-dependent RNA helic 90.2 0.65 2.2E-05 53.8 9.1 43 523-565 234-278 (479)
308 1uj2_A Uridine-cytidine kinase 90.2 0.18 6E-06 53.9 3.9 28 443-470 22-49 (252)
309 2oca_A DAR protein, ATP-depend 90.1 0.78 2.7E-05 53.5 9.7 22 445-466 130-151 (510)
310 2if2_A Dephospho-COA kinase; a 90.1 0.15 5E-06 52.2 3.1 24 445-469 3-26 (204)
311 2g6b_A RAS-related protein RAB 90.1 0.28 9.6E-06 48.1 5.1 22 445-466 12-33 (180)
312 3pqc_A Probable GTP-binding pr 90.1 1.9 6.5E-05 42.5 11.3 22 445-466 25-46 (195)
313 1fuu_A Yeast initiation factor 89.9 0.73 2.5E-05 51.1 8.9 43 523-565 161-204 (394)
314 2p5s_A RAS and EF-hand domain 89.9 0.46 1.6E-05 48.0 6.7 23 444-466 29-51 (199)
315 3thx_A DNA mismatch repair pro 89.9 0.28 9.7E-06 62.5 6.2 23 444-466 663-685 (934)
316 1jjv_A Dephospho-COA kinase; P 89.9 0.15 5E-06 52.3 3.0 23 445-468 4-26 (206)
317 2a5j_A RAS-related protein RAB 89.8 0.94 3.2E-05 45.3 8.8 22 445-466 23-44 (191)
318 1gtv_A TMK, thymidylate kinase 89.7 0.12 4.2E-06 52.9 2.2 25 445-469 2-26 (214)
319 3eiq_A Eukaryotic initiation f 89.7 0.67 2.3E-05 51.8 8.4 43 523-565 182-225 (414)
320 2zpa_A Uncharacterized protein 89.7 0.31 1.1E-05 60.0 6.0 25 444-468 193-217 (671)
321 1m7b_A RND3/RHOE small GTP-bin 89.6 0.52 1.8E-05 46.9 6.7 22 445-466 9-30 (184)
322 3e2i_A Thymidine kinase; Zn-bi 89.6 0.33 1.1E-05 52.0 5.4 36 523-561 100-135 (219)
323 3r20_A Cytidylate kinase; stru 89.5 0.22 7.6E-06 53.6 4.0 27 444-470 10-36 (233)
324 3a00_A Guanylate kinase, GMP k 89.4 0.17 5.8E-06 51.4 3.0 24 445-468 3-26 (186)
325 2nzj_A GTP-binding protein REM 89.4 0.38 1.3E-05 46.8 5.3 21 445-465 6-26 (175)
326 3bgw_A DNAB-like replicative h 89.3 0.57 1.9E-05 54.8 7.7 27 442-468 196-222 (444)
327 2qu8_A Putative nucleolar GTP- 89.3 1.8 6.3E-05 44.8 10.9 23 444-466 30-52 (228)
328 3oes_A GTPase rhebl1; small GT 89.3 0.98 3.4E-05 45.6 8.6 22 445-466 26-47 (201)
329 2z0m_A 337AA long hypothetical 89.3 0.44 1.5E-05 51.6 6.3 22 445-466 33-54 (337)
330 3a8t_A Adenylate isopentenyltr 89.3 0.15 5.1E-06 58.0 2.6 29 443-471 40-68 (339)
331 2y8e_A RAB-protein 6, GH09086P 89.3 0.93 3.2E-05 44.0 8.1 22 445-466 16-37 (179)
332 1z08_A RAS-related protein RAB 89.2 0.6 2.1E-05 45.1 6.7 22 445-466 8-29 (170)
333 3cph_A RAS-related protein SEC 89.2 0.42 1.4E-05 48.4 5.8 22 445-466 22-43 (213)
334 1z06_A RAS-related protein RAB 89.2 0.4 1.4E-05 47.8 5.6 22 445-466 22-43 (189)
335 1gwn_A RHO-related GTP-binding 89.2 0.57 1.9E-05 48.2 6.8 22 445-466 30-51 (205)
336 3asz_A Uridine kinase; cytidin 89.2 0.24 8.2E-06 50.8 3.9 26 443-468 6-31 (211)
337 2fg5_A RAB-22B, RAS-related pr 89.2 0.59 2E-05 47.0 6.7 22 445-466 25-46 (192)
338 3nwj_A ATSK2; P loop, shikimat 89.1 0.17 5.8E-06 54.9 2.8 43 428-470 33-75 (250)
339 3ihw_A Centg3; RAS, centaurin, 89.0 3.4 0.00012 41.3 12.3 22 445-466 22-43 (184)
340 2fh5_B SR-beta, signal recogni 89.0 0.87 3E-05 46.4 7.9 23 444-466 8-30 (214)
341 2dr3_A UPF0273 protein PH0284; 88.9 0.24 8.1E-06 51.6 3.7 25 443-467 23-47 (247)
342 1zu4_A FTSY; GTPase, signal re 88.9 4 0.00014 45.6 13.9 27 443-469 105-131 (320)
343 1x3s_A RAS-related protein RAB 88.9 0.36 1.2E-05 47.9 4.9 22 445-466 17-38 (195)
344 2gj8_A MNME, tRNA modification 88.7 0.73 2.5E-05 45.8 7.0 23 444-466 5-27 (172)
345 2gco_A H9, RHO-related GTP-bin 88.7 0.57 2E-05 47.5 6.4 22 445-466 27-48 (201)
346 1p9r_A General secretion pathw 88.7 0.46 1.6E-05 55.4 6.3 40 429-470 155-194 (418)
347 2ehv_A Hypothetical protein PH 88.7 0.23 7.8E-06 51.8 3.4 23 443-465 30-52 (251)
348 2whx_A Serine protease/ntpase/ 88.7 0.57 1.9E-05 57.1 7.3 25 516-540 269-293 (618)
349 2q6t_A DNAB replication FORK h 88.6 0.79 2.7E-05 53.3 8.2 27 442-468 199-225 (444)
350 2qm8_A GTPase/ATPase; G protei 88.4 8.3 0.00028 43.2 16.1 28 441-468 53-80 (337)
351 4e22_A Cytidylate kinase; P-lo 88.3 0.29 9.8E-06 52.5 3.9 28 443-470 27-54 (252)
352 3con_A GTPase NRAS; structural 88.3 0.36 1.2E-05 48.1 4.4 22 445-466 23-44 (190)
353 3t1o_A Gliding protein MGLA; G 88.2 0.7 2.4E-05 45.7 6.5 23 445-467 16-38 (198)
354 2p6r_A Afuhel308 helicase; pro 88.2 0.54 1.9E-05 57.6 6.8 42 523-564 137-182 (702)
355 2eyq_A TRCF, transcription-rep 88.2 3.1 0.0001 54.4 14.0 39 425-464 607-645 (1151)
356 2o52_A RAS-related protein RAB 88.1 1.5 5.2E-05 44.3 9.1 22 445-466 27-48 (200)
357 1uf9_A TT1252 protein; P-loop, 88.1 0.29 9.7E-06 49.5 3.6 24 443-466 8-31 (203)
358 2grj_A Dephospho-COA kinase; T 88.1 0.29 1E-05 50.8 3.7 26 445-470 14-39 (192)
359 1upt_A ARL1, ADP-ribosylation 88.0 6.9 0.00024 37.5 13.4 22 444-465 8-29 (171)
360 2ew1_A RAS-related protein RAB 88.0 1.1 3.9E-05 45.8 8.1 22 445-466 28-49 (201)
361 1sky_E F1-ATPase, F1-ATP synth 88.0 0.48 1.6E-05 56.1 5.9 26 445-470 153-178 (473)
362 2xxa_A Signal recognition part 87.9 2.9 9.8E-05 48.9 12.3 27 443-469 100-126 (433)
363 3e70_C DPA, signal recognition 87.8 9.3 0.00032 42.9 16.0 29 441-469 127-155 (328)
364 3t5g_A GTP-binding protein RHE 87.8 0.73 2.5E-05 45.3 6.3 21 445-465 8-28 (181)
365 1nlf_A Regulatory protein REPA 87.8 0.3 1E-05 52.8 3.7 26 443-468 30-55 (279)
366 2j1l_A RHO-related GTP-binding 87.7 0.72 2.5E-05 47.4 6.4 21 445-465 36-56 (214)
367 2gk6_A Regulator of nonsense t 87.6 0.45 1.5E-05 57.9 5.5 39 426-468 182-220 (624)
368 1q3t_A Cytidylate kinase; nucl 87.6 0.37 1.3E-05 50.8 4.2 28 443-470 16-43 (236)
369 2yc2_C IFT27, small RAB-relate 87.6 0.56 1.9E-05 47.0 5.4 22 445-466 22-43 (208)
370 1vht_A Dephospho-COA kinase; s 87.6 0.31 1E-05 50.5 3.5 25 444-469 5-29 (218)
371 2hxs_A RAB-26, RAS-related pro 87.6 0.41 1.4E-05 46.8 4.2 22 445-466 8-29 (178)
372 2va8_A SSO2462, SKI2-type heli 87.5 0.73 2.5E-05 56.5 7.4 20 444-463 47-66 (715)
373 1zbd_A Rabphilin-3A; G protein 87.5 0.48 1.6E-05 47.8 4.9 21 445-465 10-30 (203)
374 3fho_A ATP-dependent RNA helic 87.4 0.6 2E-05 55.1 6.3 42 523-564 258-301 (508)
375 4dkx_A RAS-related protein RAB 87.3 0.74 2.5E-05 48.5 6.3 20 446-465 16-35 (216)
376 1wrb_A DJVLGB; RNA helicase, D 87.3 0.2 6.8E-06 53.0 1.9 18 445-462 62-79 (253)
377 1zj6_A ADP-ribosylation factor 87.2 6.4 0.00022 38.9 12.9 25 441-465 14-38 (187)
378 4eaq_A DTMP kinase, thymidylat 87.2 0.39 1.3E-05 51.0 4.1 27 443-469 26-52 (229)
379 1lvg_A Guanylate kinase, GMP k 87.2 0.33 1.1E-05 50.1 3.5 25 444-468 5-29 (198)
380 2qt1_A Nicotinamide riboside k 87.2 0.3 1E-05 50.1 3.1 24 444-467 22-45 (207)
381 2f7s_A C25KG, RAS-related prot 87.2 0.57 2E-05 47.8 5.2 21 445-465 27-47 (217)
382 2gf0_A GTP-binding protein DI- 87.1 0.54 1.8E-05 46.9 4.9 23 444-466 9-31 (199)
383 2z83_A Helicase/nucleoside tri 87.1 0.89 3.1E-05 53.0 7.5 16 444-459 22-37 (459)
384 3b60_A Lipid A export ATP-bind 87.1 0.26 8.8E-06 59.5 2.9 43 524-566 498-541 (582)
385 2zts_A Putative uncharacterize 87.0 0.4 1.4E-05 49.9 4.0 24 443-466 30-53 (251)
386 2atv_A RERG, RAS-like estrogen 86.9 0.97 3.3E-05 45.4 6.7 23 444-466 29-51 (196)
387 4gp7_A Metallophosphoesterase; 86.9 0.32 1.1E-05 48.9 3.1 20 443-462 9-28 (171)
388 2jlq_A Serine protease subunit 86.9 0.6 2.1E-05 54.3 5.8 23 517-539 103-125 (451)
389 2atx_A Small GTP binding prote 86.8 0.47 1.6E-05 47.4 4.3 22 445-466 20-41 (194)
390 3q3j_B RHO-related GTP-binding 86.8 0.32 1.1E-05 50.2 3.1 22 445-466 29-50 (214)
391 1g16_A RAS-related protein SEC 86.8 0.45 1.5E-05 45.9 4.0 21 445-465 5-25 (170)
392 3d3q_A TRNA delta(2)-isopenten 86.8 0.34 1.2E-05 55.0 3.5 27 444-470 8-34 (340)
393 1h65_A Chloroplast outer envel 86.8 2.3 8E-05 45.6 10.0 31 435-465 31-61 (270)
394 2bcg_Y Protein YP2, GTP-bindin 86.7 0.52 1.8E-05 47.7 4.6 22 445-466 10-31 (206)
395 1zd9_A ADP-ribosylation factor 86.7 6.6 0.00023 39.0 12.7 22 445-466 24-45 (188)
396 2cjw_A GTP-binding protein GEM 86.7 2.7 9.1E-05 42.5 9.9 22 445-466 8-29 (192)
397 2h92_A Cytidylate kinase; ross 86.6 0.35 1.2E-05 49.9 3.3 26 445-470 5-30 (219)
398 3geh_A MNME, tRNA modification 86.5 8.4 0.00029 45.3 15.3 23 445-467 226-248 (462)
399 4djt_A GTP-binding nuclear pro 86.5 0.15 5.2E-06 52.2 0.5 20 445-464 13-32 (218)
400 1yks_A Genome polyprotein [con 86.5 1.2 4E-05 51.8 7.9 17 444-460 9-25 (440)
401 2qmh_A HPR kinase/phosphorylas 86.4 0.26 8.8E-06 52.3 2.1 25 444-468 35-59 (205)
402 1mh1_A RAC1; GTP-binding, GTPa 86.4 0.29 9.8E-06 48.2 2.4 22 445-466 7-28 (186)
403 3ney_A 55 kDa erythrocyte memb 86.4 0.43 1.5E-05 50.1 3.8 25 444-468 20-44 (197)
404 1htw_A HI0065; nucleotide-bind 86.3 0.45 1.5E-05 47.9 3.8 27 441-467 31-57 (158)
405 3c5c_A RAS-like protein 12; GD 86.3 0.39 1.3E-05 48.2 3.3 22 445-466 23-44 (187)
406 3tqc_A Pantothenate kinase; bi 86.2 0.66 2.3E-05 52.2 5.5 45 424-468 70-117 (321)
407 2fv8_A H6, RHO-related GTP-bin 86.2 0.58 2E-05 47.7 4.6 22 445-466 27-48 (207)
408 3fe2_A Probable ATP-dependent 86.1 1.4 4.7E-05 46.3 7.6 42 522-563 174-216 (242)
409 1znw_A Guanylate kinase, GMP k 86.1 0.44 1.5E-05 49.2 3.7 24 444-467 21-44 (207)
410 2wsm_A Hydrogenase expression/ 86.1 0.49 1.7E-05 48.6 4.0 45 423-468 11-55 (221)
411 2jeo_A Uridine-cytidine kinase 86.1 0.49 1.7E-05 50.2 4.1 26 444-469 26-51 (245)
412 3reg_A RHO-like small GTPase; 86.0 0.26 8.9E-06 49.5 1.9 23 444-466 24-46 (194)
413 2j0v_A RAC-like GTP-binding pr 85.9 0.42 1.4E-05 48.7 3.4 22 445-466 11-32 (212)
414 3j16_B RLI1P; ribosome recycli 85.7 1.8 6.2E-05 52.7 9.4 158 445-603 380-572 (608)
415 3lnc_A Guanylate kinase, GMP k 85.7 0.31 1.1E-05 51.0 2.3 24 444-467 28-52 (231)
416 1j8m_F SRP54, signal recogniti 85.6 2.4 8.2E-05 46.9 9.5 26 443-468 98-123 (297)
417 2j0s_A ATP-dependent RNA helic 85.6 2.6 8.9E-05 47.2 10.0 42 523-564 178-220 (410)
418 1z6g_A Guanylate kinase; struc 85.5 0.41 1.4E-05 50.2 3.1 23 445-467 25-47 (218)
419 3iby_A Ferrous iron transport 85.5 1.4 4.7E-05 47.5 7.4 22 445-466 3-24 (256)
420 1wf3_A GTP-binding protein; GT 85.5 6.5 0.00022 43.4 12.9 119 445-566 9-129 (301)
421 1gm5_A RECG; helicase, replica 85.4 3.6 0.00012 51.5 12.0 40 425-465 372-411 (780)
422 2e87_A Hypothetical protein PH 85.4 6.6 0.00022 44.1 13.2 24 443-466 167-190 (357)
423 3bwd_D RAC-like GTP-binding pr 85.3 0.42 1.4E-05 46.9 2.9 22 445-466 10-31 (182)
424 1g8f_A Sulfate adenylyltransfe 85.3 0.48 1.6E-05 56.7 3.9 44 426-469 377-421 (511)
425 2v9p_A Replication protein E1; 85.2 0.9 3.1E-05 50.8 5.9 28 440-467 123-150 (305)
426 3cbq_A GTP-binding protein REM 85.2 0.92 3.1E-05 46.1 5.5 20 445-464 25-44 (195)
427 2f6r_A COA synthase, bifunctio 85.1 0.53 1.8E-05 51.5 3.9 25 444-469 76-100 (281)
428 2h17_A ADP-ribosylation factor 85.0 1.9 6.3E-05 42.7 7.6 22 445-466 23-44 (181)
429 2wjy_A Regulator of nonsense t 85.0 0.71 2.4E-05 58.0 5.4 39 426-468 358-396 (800)
430 3gee_A MNME, tRNA modification 84.9 2.1 7.2E-05 50.6 9.2 115 445-566 235-355 (476)
431 4gzl_A RAS-related C3 botulinu 84.9 0.24 8.1E-06 50.7 0.9 23 444-466 31-53 (204)
432 3eph_A TRNA isopentenyltransfe 84.8 0.52 1.8E-05 54.8 3.8 27 444-470 3-29 (409)
433 2wv9_A Flavivirin protease NS2 84.7 2.8 9.7E-05 51.6 10.5 20 520-539 328-347 (673)
434 3hdt_A Putative kinase; struct 84.7 0.52 1.8E-05 50.2 3.5 28 444-471 15-42 (223)
435 2db3_A ATP-dependent RNA helic 84.6 0.6 2E-05 53.8 4.2 42 522-563 201-246 (434)
436 2gf9_A RAS-related protein RAB 84.5 0.47 1.6E-05 47.4 2.9 22 445-466 24-45 (189)
437 2aya_A DNA polymerase III subu 84.4 2.7 9.4E-05 41.0 8.2 72 869-944 24-95 (128)
438 2v1x_A ATP-dependent DNA helic 84.4 0.53 1.8E-05 57.0 3.9 33 425-464 48-80 (591)
439 3cpj_B GTP-binding protein YPT 84.4 0.46 1.6E-05 49.1 2.9 22 445-466 15-36 (223)
440 3kta_A Chromosome segregation 84.2 0.56 1.9E-05 46.9 3.3 25 445-469 28-52 (182)
441 2hf9_A Probable hydrogenase ni 84.1 1 3.4E-05 46.4 5.3 41 427-468 23-63 (226)
442 3rc3_A ATP-dependent RNA helic 84.0 0.28 9.4E-06 60.6 1.1 17 444-460 156-172 (677)
443 3tqf_A HPR(Ser) kinase; transf 83.8 0.6 2E-05 48.6 3.3 24 443-466 16-39 (181)
444 2axn_A 6-phosphofructo-2-kinas 83.7 0.68 2.3E-05 55.3 4.4 28 443-470 35-62 (520)
445 1xjc_A MOBB protein homolog; s 83.7 0.68 2.3E-05 47.5 3.8 26 444-469 5-30 (169)
446 3t5d_A Septin-7; GTP-binding p 83.7 3.8 0.00013 44.1 9.8 20 445-464 10-29 (274)
447 3fdi_A Uncharacterized protein 83.6 0.56 1.9E-05 48.8 3.1 29 444-472 7-35 (201)
448 3i5x_A ATP-dependent RNA helic 83.6 3.3 0.00011 48.9 10.1 20 443-462 111-130 (563)
449 2o8b_B DNA mismatch repair pro 83.5 1.1 3.7E-05 57.8 6.3 22 443-464 789-810 (1022)
450 2iwr_A Centaurin gamma 1; ANK 83.4 3.6 0.00012 40.1 8.8 22 445-466 9-30 (178)
451 2oap_1 GSPE-2, type II secreti 83.0 0.74 2.5E-05 55.0 4.2 39 427-468 247-285 (511)
452 2xzl_A ATP-dependent helicase 83.0 0.78 2.7E-05 57.7 4.6 38 427-468 363-400 (802)
453 1np6_A Molybdopterin-guanine d 83.0 0.75 2.6E-05 47.1 3.7 25 444-468 7-31 (174)
454 3aez_A Pantothenate kinase; tr 82.8 0.78 2.7E-05 51.2 4.1 29 441-469 88-116 (312)
455 2i1q_A DNA repair and recombin 82.8 0.66 2.3E-05 51.2 3.5 25 443-467 98-122 (322)
456 2ewv_A Twitching motility prot 82.8 0.73 2.5E-05 52.6 3.9 27 443-469 136-162 (372)
457 3b9q_A Chloroplast SRP recepto 82.7 0.77 2.6E-05 51.0 4.0 26 444-469 101-126 (302)
458 1rj9_A FTSY, signal recognitio 82.7 0.84 2.9E-05 50.8 4.3 27 443-469 102-128 (304)
459 2q3h_A RAS homolog gene family 82.7 0.44 1.5E-05 48.0 1.8 22 445-466 22-43 (201)
460 1oyw_A RECQ helicase, ATP-depe 82.6 2.8 9.7E-05 49.7 9.0 33 425-464 29-61 (523)
461 2ocp_A DGK, deoxyguanosine kin 82.6 0.66 2.3E-05 48.9 3.2 25 444-468 3-27 (241)
462 2qtf_A Protein HFLX, GTP-bindi 82.6 4.4 0.00015 46.1 10.2 22 445-466 181-202 (364)
463 1x6v_B Bifunctional 3'-phospho 82.5 0.66 2.3E-05 56.8 3.6 26 442-467 51-76 (630)
464 2ffh_A Protein (FFH); SRP54, s 82.5 4.4 0.00015 47.3 10.3 27 443-469 98-124 (425)
465 1m8p_A Sulfate adenylyltransfe 82.4 0.78 2.7E-05 55.5 4.2 30 440-469 393-422 (573)
466 2qag_C Septin-7; cell cycle, c 82.4 2.8 9.5E-05 48.8 8.6 23 445-467 33-55 (418)
467 3cr8_A Sulfate adenylyltranfer 82.4 0.75 2.6E-05 55.4 4.0 43 427-469 352-395 (552)
468 2xtp_A GTPase IMAP family memb 82.4 4 0.00014 43.2 9.2 22 444-465 23-44 (260)
469 1ega_A Protein (GTP-binding pr 82.3 3.6 0.00012 45.3 9.2 22 445-466 10-31 (301)
470 2xgj_A ATP-dependent RNA helic 82.3 2.8 9.6E-05 54.0 9.4 18 445-462 103-120 (1010)
471 3iev_A GTP-binding protein ERA 82.3 3.7 0.00013 45.3 9.2 29 921-949 267-295 (308)
472 2g3y_A GTP-binding protein GEM 82.1 2.8 9.6E-05 43.7 7.8 20 445-464 39-58 (211)
473 1a7j_A Phosphoribulokinase; tr 82.1 0.46 1.6E-05 52.4 1.9 25 444-468 6-30 (290)
474 4edh_A DTMP kinase, thymidylat 82.1 0.84 2.9E-05 48.1 3.8 28 443-470 6-33 (213)
475 2zj8_A DNA helicase, putative 82.0 0.78 2.7E-05 56.4 4.0 18 444-461 40-57 (720)
476 2e0g_A Chromosomal replication 81.8 2.8 9.6E-05 39.3 6.9 73 869-946 3-81 (107)
477 3o8b_A HCV NS3 protease/helica 81.8 3.1 0.00011 51.3 9.1 40 523-562 317-359 (666)
478 2b6h_A ADP-ribosylation factor 81.7 2.8 9.6E-05 42.2 7.4 20 445-464 31-50 (192)
479 3l9o_A ATP-dependent RNA helic 81.6 1.8 6.3E-05 56.2 7.4 21 445-465 201-221 (1108)
480 3i8s_A Ferrous iron transport 81.5 2.3 7.8E-05 46.1 7.1 22 445-466 5-26 (274)
481 1sq5_A Pantothenate kinase; P- 81.5 0.91 3.1E-05 50.2 4.0 28 441-468 78-105 (308)
482 2gks_A Bifunctional SAT/APS ki 80.7 1 3.6E-05 54.1 4.4 43 427-469 355-398 (546)
483 4a4z_A Antiviral helicase SKI2 80.7 1.5 5.1E-05 56.4 6.1 22 444-465 55-76 (997)
484 2j69_A Bacterial dynamin-like 80.6 6.3 0.00022 48.6 11.4 23 443-465 69-91 (695)
485 3gmt_A Adenylate kinase; ssgci 80.6 0.83 2.8E-05 49.1 3.1 26 446-471 11-36 (230)
486 4f4c_A Multidrug resistance pr 80.4 0.43 1.5E-05 63.1 1.0 25 444-468 445-469 (1321)
487 1lw7_A Transcriptional regulat 80.3 1 3.5E-05 50.8 3.9 27 444-470 171-197 (365)
488 3r7w_A Gtpase1, GTP-binding pr 80.3 4.5 0.00015 44.5 9.0 21 445-465 5-25 (307)
489 3ld9_A DTMP kinase, thymidylat 80.3 1.1 3.9E-05 47.7 4.1 29 441-469 19-47 (223)
490 2gza_A Type IV secretion syste 80.2 1.4 4.7E-05 50.0 5.0 35 431-468 166-200 (361)
491 1bif_A 6-phosphofructo-2-kinas 80.2 1 3.4E-05 52.8 3.9 28 443-470 39-66 (469)
492 2f1r_A Molybdopterin-guanine d 80.1 0.87 3E-05 46.5 3.0 25 445-469 4-28 (171)
493 3gj0_A GTP-binding nuclear pro 80.1 0.37 1.3E-05 49.6 0.2 21 445-465 17-37 (221)
494 2og2_A Putative signal recogni 80.0 1.1 3.6E-05 51.3 3.9 27 443-469 157-183 (359)
495 4f4c_A Multidrug resistance pr 79.8 0.45 1.6E-05 62.9 0.9 42 524-565 1235-1277(1321)
496 4dcu_A GTP-binding protein ENG 79.8 5.2 0.00018 46.5 9.8 114 444-565 24-142 (456)
497 3sqw_A ATP-dependent RNA helic 79.8 3.9 0.00013 48.8 8.9 21 443-463 60-80 (579)
498 3dpu_A RAB family protein; roc 79.7 3.8 0.00013 48.7 8.7 42 425-466 15-64 (535)
499 1p5z_B DCK, deoxycytidine kina 79.7 0.46 1.6E-05 50.9 0.8 27 442-468 23-49 (263)
500 3tif_A Uncharacterized ABC tra 79.6 0.95 3.2E-05 48.3 3.2 42 524-565 163-207 (235)
No 1
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=100.00 E-value=5.8e-43 Score=392.59 Aligned_cols=352 Identities=26% Similarity=0.435 Sum_probs=320.4
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.+.+|.+||+|.+|++++|++.+++.|.+++..++.+++|||+||+|||||++|+++++.++|.......||+.|..|..
T Consensus 2 ~~~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 81 (373)
T 1jr3_A 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 (373)
T ss_dssp -CCCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHH
T ss_pred CcHHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999987667789999999999
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
+..+...+++++++....+.+.++++++.+...|..++++||||||+|.++...++.|++++++++.+++||++|+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred HhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 99998889999887666667788999999888888888999999999999999999999999999999999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHHH
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELV 645 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~elV 645 (1152)
+.+++.+||..+.|++++.+++..+|..+++++|+.+++++++.|+..++||+|.+.++++++..+ .+.||.++|.+++
T Consensus 162 l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 162 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 (373)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTTTCBCHHHHHHHT
T ss_pred CcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999998766 4579999999999
Q ss_pred hccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchh----HHHHHHhCCCCcc
Q 036794 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH----RRKFFRRQPLSKE 721 (1152)
Q Consensus 646 g~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~----~~~~~~r~~ls~~ 721 (1152)
+....+.+|++++++..++...++..+..|...|.+|..++..|.++|++++..+........ ....+ .+.+.++
T Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~l~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~-~~~a~~~ 320 (373)
T 1jr3_A 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM-RELARTI 320 (373)
T ss_dssp TCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSGGGGTHHHH-HHHHHHS
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhhcCccccccchhHHHHH-HHHHHhC
Confidence 999999999999999999999999999999999999999999999999999987653221111 11112 2234589
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 722 EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 722 s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+.+.|.+++..|.++|.++|.+.++++.||.++++++.
T Consensus 321 ~~~~l~~~~~~l~~~~~~lk~~~~~~l~le~~ll~~~~ 358 (373)
T 1jr3_A 321 PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999985
No 2
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=100.00 E-value=2.3e-38 Score=346.73 Aligned_cols=310 Identities=24% Similarity=0.359 Sum_probs=272.0
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.+.+|.+||+|.+|++++|++.+++.|.+++..++.++ |||+||+|||||++|+++++.+.+...
T Consensus 3 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~-------------- 67 (319)
T 2chq_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDLFGENW-------------- 67 (319)
T ss_dssp ---CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCC-EEEESSSSSSHHHHHHHHHHHHHTTCH--------------
T ss_pred ccccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCe-EEEECcCCcCHHHHHHHHHHHhcCCcc--------------
Confidence 35799999999999999999999999999999988887 999999999999999999999875421
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHh-hCCCC-CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMV-TSRPP-SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~-~~P~~-a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
...+++++.....+.+.+++++..+. ..++. ++++||||||+|.++.+.+++|++++++++.+++||++||.+
T Consensus 68 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 68 -----RDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (319)
T ss_dssp -----HHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred -----cCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 01133343333333344444444443 44554 668999999999999999999999999999999999999999
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQEL 644 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~el 644 (1152)
.++.++|.+||..+.|++++.+++..+|..++.++|+.+++++++.|+..++||+|.++++|++++.+++.||.++|.++
T Consensus 143 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~i~~~~v~~~ 222 (319)
T 2chq_A 143 SRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQI 222 (319)
T ss_dssp GGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSSSCBCHHHHHHH
T ss_pred hhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888778999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccH
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIME-TGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEM 723 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~-~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~ 723 (1152)
++......+|++++++..+|...+++.+.+|+. .|.+|..++..|.++++.+ +++.
T Consensus 223 ~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~l-----------------------~~~~ 279 (319)
T 2chq_A 223 TATARPEEMTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISM-----------------------PIKD 279 (319)
T ss_dssp TTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTS-----------------------CSCT
T ss_pred HCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------------------cCCH
Confidence 999999999999999999999999999999998 9999999999988876632 4777
Q ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 724 EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 724 ~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+.+.+++..+.++|.++|.+.++++.||.+++++|.
T Consensus 280 ~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~ 315 (319)
T 2chq_A 280 SLKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLST 315 (319)
T ss_dssp THHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999984
No 3
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=1.1e-37 Score=349.83 Aligned_cols=309 Identities=19% Similarity=0.317 Sum_probs=279.6
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
..+|.+||||.+|++++||+.+++.|..++..++.+| |||+||+|||||++|+++++.+.+...
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~--------------- 75 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIYGKNY--------------- 75 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSH---------------
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCc---------------
Confidence 6799999999999999999999999999999999998 999999999999999999999986421
Q ss_pred cCCCccceEEeCCCCCCCHHHHHHHHHHHh--hCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 488 DRGKSRNIKEVGPVGNFDFESILDLLDNMV--TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~~~vdeIreLle~a~--~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
...+.+++.....+.+.+++.+..+. ..++.+.++|+||||+|.|+.+++++|++++|+++.++.||++||.+.
T Consensus 76 ----~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~ 151 (340)
T 1sxj_C 76 ----SNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAH 151 (340)
T ss_dssp ----HHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred ----cceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCcc
Confidence 12356666655566788888777655 344556789999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-----CCCHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-----RISVPL 640 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~-----~IT~Ed 640 (1152)
++.++|.+||+.+.|.+++.+++.+++..+++.+++.+++++++.++..++|++|.++++|+.++.+.+ .||.++
T Consensus 152 ~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~ 231 (340)
T 1sxj_C 152 KLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDV 231 (340)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHH
T ss_pred ccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999877654 699999
Q ss_pred HHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCC
Q 036794 641 VQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIME-TGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLS 719 (1152)
Q Consensus 641 V~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~-~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls 719 (1152)
|.++++......++++++++..+|...|+.++..|+. .|++|..|+..|..+++.+
T Consensus 232 v~~~~~~~~~~~i~~l~~~i~~~~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~----------------------- 288 (340)
T 1sxj_C 232 IYECCGAPRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDY----------------------- 288 (340)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTS-----------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------------------
Confidence 9999999999999999999999999999999999998 9999999999988877632
Q ss_pred ccc-HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 720 KEE-MEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 720 ~~s-~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
.++ ...+.+++..+.++|.+||.+.++.+.||.++++++.
T Consensus 289 ~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~l~~~l~~ 329 (340)
T 1sxj_C 289 ELQNEETRVHLLTKLADIEYSISKGGNDQIQGSAVIGAIKA 329 (340)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 255 6789999999999999999999999999999999984
No 4
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=3.4e-37 Score=338.65 Aligned_cols=310 Identities=24% Similarity=0.365 Sum_probs=274.3
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
...+|.+||+|.+|++++|++.+++.|..++..++.++ |||+||+|||||++|+++++.+.+...
T Consensus 11 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~la~~l~~~l~~~~~-------------- 75 (327)
T 1iqp_A 11 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELFGENW-------------- 75 (327)
T ss_dssp TTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCE-EEEESCTTSSHHHHHHHHHHHHHGGGH--------------
T ss_pred cCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcc--------------
Confidence 35699999999999999999999999999999998877 999999999999999999999876421
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHH-hhCCCC-CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNM-VTSRPP-SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a-~~~P~~-a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
...+.++++....+.+.+++.+... ...|+. ++++||||||+|.++.+.+++|++++++++.+++||++|+.+
T Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 76 -----RHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp -----HHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred -----cCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 1124445443333344445544443 344444 678999999999999999999999999999999999999999
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQEL 644 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~el 644 (1152)
+++.+++.+||..+.|++++.+++..++..++..+++.+++++++.|+..++||+|.++++|++++.....||.++|.++
T Consensus 151 ~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~ 230 (327)
T 1iqp_A 151 SKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMV 230 (327)
T ss_dssp GGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred cccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887778999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccH
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIM-ETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEM 723 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL-~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~ 723 (1152)
++....++++++++++..++...+++.++.++ ..|.+|..++..|..+++.+ +++.
T Consensus 231 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~~-----------------------~~~~ 287 (327)
T 1iqp_A 231 ASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNL-----------------------PIEE 287 (327)
T ss_dssp TTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGS-----------------------SSCH
T ss_pred HCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------------------cCCH
Confidence 99999999999999999999999999999999 99999999999988875421 5888
Q ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 724 EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 724 ~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+.+.+++..+.++|.++|++.++++.||.+++++|.
T Consensus 288 ~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~ 323 (327)
T 1iqp_A 288 PKKVLLADKIGEYNFRLVEGANEIIQLEALLAQFTL 323 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999973
No 5
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2e-35 Score=324.10 Aligned_cols=307 Identities=15% Similarity=0.262 Sum_probs=274.3
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
..+|.++|+|..|++++|++.+++.|.+++..++.++ |||+||+|+|||++|+++++.+.|...
T Consensus 8 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~--------------- 71 (323)
T 1sxj_B 8 QLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHELLGRSY--------------- 71 (323)
T ss_dssp CCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGH---------------
T ss_pred cCcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcc---------------
Confidence 4689999999999999999999999999999998888 999999999999999999999876421
Q ss_pred cCCCccceEEeCCCCCCCHHHHHHHHHHHh--hCCC-CCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 488 DRGKSRNIKEVGPVGNFDFESILDLLDNMV--TSRP-PSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~~~vdeIreLle~a~--~~P~-~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
...+++++.....+.+.++++++.+. ..++ .++++||||||+|.++...+++|++++++++.+++||++|+.+
T Consensus 72 ----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 72 ----ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp ----HHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred ----cCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 12355666555556788888888765 3444 4558999999999999999999999999999999999999999
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQEL 644 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~el 644 (1152)
.++.+++.+||..+.|++++.+++..+|..++..+|+.+++++++.|+..++||+|.++++|++++...+.|+.++|.++
T Consensus 148 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~~~i~~~~v~~~ 227 (323)
T 1sxj_B 148 NKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKI 227 (323)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSBCHHHHHHH
T ss_pred hhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999876678999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHH-HHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccH
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRV-IMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEM 723 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~-LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~ 723 (1152)
++......+++++++ ++...++.++.. |+..|.++..++..+..+++.+ ..++.
T Consensus 228 ~~~~~~~~i~~~~~~---~~~~~~l~~l~~dl~~~g~~~~~i~~~l~~~~~~l----------------------~~~~~ 282 (323)
T 1sxj_B 228 VDSPHPLIVKKMLLA---SNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNL----------------------AQVKE 282 (323)
T ss_dssp HTSCCHHHHHHHHSC---SSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTC----------------------TTSCH
T ss_pred HCCCCHHHHHHHHhc---CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------------------ccCCH
Confidence 999988999999987 899999999998 9889999999888877765532 23788
Q ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 724 EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 724 ~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
..+.++++.|.++|.++|.+.++++.||.++++++.
T Consensus 283 ~~l~~~l~~l~~~~~~l~~~~~~~l~le~l~~~~~~ 318 (323)
T 1sxj_B 283 SVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHK 318 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999974
No 6
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=1.5e-35 Score=330.05 Aligned_cols=313 Identities=21% Similarity=0.346 Sum_probs=269.9
Q ss_pred cccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 405 NGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 405 ~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
+....+|.+||+|.+|++++|++.+++.|..++..+..++ +||+||||||||++|+++++.+++....
T Consensus 21 ~~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~la~~la~~l~~~~~~----------- 88 (353)
T 1sxj_D 21 SLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKELYGPDLM----------- 88 (353)
T ss_dssp -----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCC-EEEECSTTSSHHHHHHHHHHHHHHHHHH-----------
T ss_pred cccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCE-EEEECCCCCCHHHHHHHHHHHhCCCccc-----------
Confidence 4557899999999999999999999999999999988877 8999999999999999999998753100
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCC------------CCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR------------PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP 552 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P------------~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp 552 (1152)
...+.++++....+.+.+++.+....... ..+.++||||||+|.++...+++|+++|++++
T Consensus 89 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~ 161 (353)
T 1sxj_D 89 -------KSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS 161 (353)
T ss_dssp -------TTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT
T ss_pred -------ccceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC
Confidence 01244555444455666666555443221 12467899999999999999999999999999
Q ss_pred CCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 036794 553 RRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL 632 (1152)
Q Consensus 553 ~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl 632 (1152)
.+++||++||.+..+.+++.+||..+.|++++.+++..+|..++..+++.+++++++.|+.+++||+|.++++|++++.+
T Consensus 162 ~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~ 241 (353)
T 1sxj_D 162 GVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKG 241 (353)
T ss_dssp TTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHH
T ss_pred CCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred C-C-----CCCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc
Q 036794 633 G-Q-----RISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706 (1152)
Q Consensus 633 g-~-----~IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g 706 (1152)
. . .||.++|.++++....+.++++++++..++...++.++++++..|++|..|+..|..+++
T Consensus 242 ~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~------------ 309 (353)
T 1sxj_D 242 AQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYI------------ 309 (353)
T ss_dssp HHHHCSCCCCCHHHHHHHHTCCCSHHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHH------------
T ss_pred cCCCccCccccHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH------------
Confidence 2 2 699999999999998999999999999999999999999999999999999998887653
Q ss_pred hhHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 707 RHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 707 ~~~~~~~~r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
....++...+.+++..|.++|.+||.+.++.+.||.++++|+
T Consensus 310 ----------~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~l~~~~~~~~ 351 (353)
T 1sxj_D 310 ----------TNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKIS 351 (353)
T ss_dssp ----------HCSSSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ----------HhccCCHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 123678899999999999999999999999999999999986
No 7
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=4.8e-36 Score=335.60 Aligned_cols=322 Identities=18% Similarity=0.248 Sum_probs=253.9
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHH-HhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC--------CCCCCC
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAV-MRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE--------QPKPCG 479 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL-~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e--------~~epcg 479 (1152)
.+|++||||++|++++||+.+++.|.+++ ..++.++ |||+||+|+|||++++++++++.+.... ...||+
T Consensus 2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~ 80 (354)
T 1sxj_E 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN 80 (354)
T ss_dssp --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------
T ss_pred CcchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc
Confidence 38999999999999999999999999999 8888888 9999999999999999999988665321 223566
Q ss_pred CCCccccccCCCccceEEeCCCCCC--CHHHHHHHHHHHhhC-CC---------CCCceEEEEeCCCCCCHHHHHHHHHH
Q 036794 480 FCNSCISHDRGKSRNIKEVGPVGNF--DFESILDLLDNMVTS-RP---------PSQYRIFVFDDCDTLSPDSWSAISKV 547 (1152)
Q Consensus 480 ~c~~c~~i~~g~~~dviEIdaas~~--~vdeIreLle~a~~~-P~---------~a~~kVVIIDEID~Ls~eaqnaLLkl 547 (1152)
.|..|..+... .++++++.... ....++++++.+... +. .++++||||||++.|...++++|+++
T Consensus 81 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~ 157 (354)
T 1sxj_E 81 RKLELNVVSSP---YHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRT 157 (354)
T ss_dssp -----CCEECS---SEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHH
T ss_pred ccceeeeeccc---ceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHH
Confidence 65555444332 24455443211 112466666665322 21 34789999999999999999999999
Q ss_pred HhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCC-HHHHHHHHHhcCCCHHHHHHHH
Q 036794 548 VDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEID-KDALKLIASRSDGSLRDAEMTL 626 (1152)
Q Consensus 548 LEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id-~dALelLAe~s~GDLR~Ain~L 626 (1152)
|++++.++.||++|+++++++++|.+||..+.|++++.+++..+|..++.++|+.++ +++++.|+..++||+|.++++|
T Consensus 158 le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 158 MEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp HHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 999989999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhCC-CCCHHHHHHHHhccchhhHHHHHHHHHcCCHHH----HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchh
Q 036794 627 EQLSLLGQ-RISVPLVQELVGLISDEKLVDLLDLALSADTVN----TVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701 (1152)
Q Consensus 627 EkLsLlg~-~IT~EdV~elVg~v~ee~ifdLldAils~d~~~----ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~ 701 (1152)
++++.+.+ .||.+++ +.....++.+|+++++++.++... +...+..|+..|.++..|+.+|..++.
T Consensus 238 ~~~~~~~~~~i~~~~~--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~------- 308 (354)
T 1sxj_E 238 ESMALNNELALKSSSP--IIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLL------- 308 (354)
T ss_dssp THHHHTTTTEECSSCC--CCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTT-------
T ss_pred HHHHHhCCCCcCcCcC--CCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-------
Confidence 99988765 5876554 222334578899999999865544 445566777889999988876654221
Q ss_pred hhhcchhHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 702 DFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 702 ~~~~g~~~~~~~~r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
.+.+++...+.++++.+.++|.++|.+.++.+.||.+++++|
T Consensus 309 ---------------~~~~~~~~~l~~~~~~l~~~d~~l~~g~~~~~~le~~~~~~~ 350 (354)
T 1sxj_E 309 ---------------DVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVM 350 (354)
T ss_dssp ---------------TCTTSCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred ---------------hccCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 123688899999999999999999999999999999999987
No 8
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=100.00 E-value=1.2e-35 Score=329.84 Aligned_cols=299 Identities=17% Similarity=0.232 Sum_probs=253.5
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
....+|.+||+|.+|++++|++.+++.|.+++..++.++.|||+||||||||++|+++++.+++.
T Consensus 11 ~~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~--------------- 75 (324)
T 3u61_B 11 EKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNAD--------------- 75 (324)
T ss_dssp TTCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEE---------------
T ss_pred cccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCC---------------
Confidence 44679999999999999999999999999999999999999999999999999999999998643
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHH-HhhCCCCCCceEEEEeCCCCCC-HHHHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDN-MVTSRPPSQYRIFVFDDCDTLS-PDSWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~-a~~~P~~a~~kVVIIDEID~Ls-~eaqnaLLklLEepp~~VifILaTN~ 563 (1152)
++++++. ..+.+.+++.+.. +...++.+.++||||||+|.++ .+.++.|++++++++.+++||++||.
T Consensus 76 ---------~~~i~~~-~~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 76 ---------MMFVNGS-DCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp ---------EEEEETT-TCCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESS
T ss_pred ---------EEEEccc-ccCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 4455442 2447777776665 4456667789999999999999 99999999999999899999999999
Q ss_pred CCcchHHHHccceEEEecCCChhH-------HHHHHHHHHHHcCCCCCH-HHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 036794 564 LDALPHIIISRCQKFFFPKMKDAD-------IIYTLQWIASKEGIEIDK-DALKLIASRSDGSLRDAEMTLEQLSLLGQR 635 (1152)
Q Consensus 564 ~dkL~~aL~SR~qvI~F~~p~~~E-------I~eiL~~iakkeGl~Id~-dALelLAe~s~GDLR~Ain~LEkLsLlg~~ 635 (1152)
+.+++++|.+||.++.|++|+.++ +..++..++..+++.+++ ++++.|+..++||+|.+++.|++++ ..+.
T Consensus 146 ~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~-~~~~ 224 (324)
T 3u61_B 146 IDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS-SKGV 224 (324)
T ss_dssp GGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG-GGTC
T ss_pred ccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh-ccCC
Confidence 999999999999999999999776 456677778889999998 9999999999999999999999998 5667
Q ss_pred CCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHh
Q 036794 636 ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRR 715 (1152)
Q Consensus 636 IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r 715 (1152)
||.++|.+++.. .+.++++++++..++...++..+.+++. +|..|+..|+.++..
T Consensus 225 i~~~~v~~~~~~--~~~i~~~~~~~~~~~~~~a~~~~~~l~~---~~~~i~~~l~~~~~~-------------------- 279 (324)
T 3u61_B 225 LDAGILSLVTND--RGAIDDVLESLKNKDVKQLRALAPKYAA---DYSWFVGKLAEEIYS-------------------- 279 (324)
T ss_dssp BCC--------------CHHHHHHHHTTCHHHHHHHHHHHSS---CHHHHHHHHHHHHHH--------------------
T ss_pred CCHHHHHHHhCC--HHHHHHHHHHHHcCCHHHHHHHHHHhcc---CHHHHHHHHHHHHHH--------------------
Confidence 999999998766 6789999999999999999999999988 898888877654431
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 716 QPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 716 ~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
.++.+.+.+++..|.++|.+||.+.++.+.||.++++++.
T Consensus 280 ----~~~~~~l~~i~~~l~~~d~~l~~g~~~~~~le~~~~~~~~ 319 (324)
T 3u61_B 280 ----RVTPQSIIRMYEIVGENNQYHGIAANTELHLAYLFIQLAC 319 (324)
T ss_dssp ----HSCHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred ----hCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999974
No 9
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=100.00 E-value=6.6e-35 Score=327.44 Aligned_cols=303 Identities=16% Similarity=0.175 Sum_probs=263.4
Q ss_pred HHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHH
Q 036794 432 ALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILD 511 (1152)
Q Consensus 432 ~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIre 511 (1152)
.|.+.++ ++.+++||||||+|+||+++++.|++.+.|.... + ..+++++. . .++++
T Consensus 8 ~l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~---~---------------~~~~~~~~--~---~~~~~ 63 (343)
T 1jr3_D 8 QLRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE---E---------------HHTFSIDP--N---TDWNA 63 (343)
T ss_dssp THHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCC---E---------------EEEEECCT--T---CCHHH
T ss_pred HHHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCC---e---------------eEEEEecC--C---CCHHH
Confidence 4566677 6899999999999999999999999998865210 0 01334442 2 34566
Q ss_pred HHHHHhhCCCCCCceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCC------CcchHHHHccceEEEecCCC
Q 036794 512 LLDNMVTSRPPSQYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSL------DALPHIIISRCQKFFFPKMK 584 (1152)
Q Consensus 512 Lle~a~~~P~~a~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~------dkL~~aL~SR~qvI~F~~p~ 584 (1152)
+++.+...|++++++||||||+|. ++.+++++|+++|++|+.+++||++++++ .++.++|.+||+++.|.+++
T Consensus 64 l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~ 143 (343)
T 1jr3_D 64 IFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPE 143 (343)
T ss_dssp HHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCC
T ss_pred HHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCC
Confidence 777777778889999999999999 99999999999999999999999999874 46899999999999999999
Q ss_pred hhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHhccchhhHHHHHHHHHc
Q 036794 585 DADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRISVPLVQELVGLISDEKLVDLLDLALS 662 (1152)
Q Consensus 585 ~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl--g~~IT~EdV~elVg~v~ee~ifdLldAils 662 (1152)
..++..||..+++++|+.++++++++|++.++||++.+.++|++++++ ++.||.++|.++++...++++|++++++..
T Consensus 144 ~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~ai~~ 223 (343)
T 1jr3_D 144 QAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLM 223 (343)
T ss_dssp TTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999887 456999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHH------------hCCCCcccHHHHHHHH
Q 036794 663 ADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFR------------RQPLSKEEMEKLRQAL 730 (1152)
Q Consensus 663 ~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~------------r~~ls~~s~~kL~qaL 730 (1152)
+|...|+..++.|+..|++|..|++.|.++||+|+.++.....+ .....++ .+++.+|+.+.|.+++
T Consensus 224 ~d~~~al~~l~~l~~~g~~~~~il~~l~~~~r~l~~~~~~~~~g-~~~~i~~~l~i~~~~~~~~~~~~~~~s~~~L~~~l 302 (343)
T 1jr3_D 224 GKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHT-PLRALFDKHRVWQNRRGMMGEALNRLSQTQLRQAV 302 (343)
T ss_dssp SCHHHHHHHHTSSTTTTCCHHHHHHHHHHHHHHHHHHHTCSSSS-CHHHHHHHHTCCSSHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999988754444 2222111 2235689999999999
Q ss_pred HHHHHHHHHhccC--CCHHHHHHHHHHHcCC
Q 036794 731 KTLSEAEKQLRMS--NDKLTWLTAALLQLAP 759 (1152)
Q Consensus 731 ~~L~eaD~qLK~s--~dprl~LE~lLLkLa~ 759 (1152)
..|.++|.++|++ .++++.||.+++++|.
T Consensus 303 ~~l~~~d~~lK~~~~~~~~~~le~l~l~l~~ 333 (343)
T 1jr3_D 303 QLLTRTELTLKQDYGQSVWAELEGLSLLLCH 333 (343)
T ss_dssp HHHHHHHHHHHHSSCSCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Confidence 9999999999995 4899999999999996
No 10
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=100.00 E-value=2.6e-35 Score=331.46 Aligned_cols=308 Identities=16% Similarity=0.190 Sum_probs=253.4
Q ss_pred CcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCC---
Q 036794 425 GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPV--- 501 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaa--- 501 (1152)
-++++++.|.+++..++.+|+|||+||+|||||++|+++|+.++|.......||+.|..|..+..+.++++.++++.
T Consensus 6 w~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 85 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGK 85 (334)
T ss_dssp GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTC
T ss_pred chHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccC
Confidence 36788899999999999999999999999999999999999999987655689999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEec
Q 036794 502 GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFP 581 (1152)
Q Consensus 502 s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~ 581 (1152)
...++++++++++.+...|+.++++||||||+|.|+.+++++|+++||+|+.+++||++|+++++++++|+|||+.+.|+
T Consensus 86 ~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~ 165 (334)
T 1a5t_A 86 NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLA 165 (334)
T ss_dssp SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCC
Confidence 45789999999999998998899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHHHHHHH
Q 036794 582 KMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLAL 661 (1152)
Q Consensus 582 ~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdLldAil 661 (1152)
+++.+++.+||..++ .+++++++.++..++|++|.+++++++.......++.+.+..++.
T Consensus 166 ~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~~~~~~~~~~~~~~~--------------- 225 (334)
T 1a5t_A 166 PPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVP--------------- 225 (334)
T ss_dssp CCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHHHHHHHHHHHHHHHH---------------
T ss_pred CCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccchHHHHHHHHHHHHHHHh---------------
Confidence 999999999998764 689999999999999999999999988653221222233333222
Q ss_pred cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchh---HHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Q 036794 662 SADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH---RRKFFRRQPLSKEEMEKLRQALKTLSEAEK 738 (1152)
Q Consensus 662 s~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~---~~~~~~r~~ls~~s~~kL~qaL~~L~eaD~ 738 (1152)
..+.. ..+..+ .+.++..++..|..+|++++..+... .+.. ....+.. .+.+++.+.|.++++.+.+++.
T Consensus 226 ~~~~~---~~~~~l--~~~~~~~~l~~l~~~~rdll~~~~~~-~~~~~~~~~~~~~~-~a~~~~~~~l~~~~~~l~~~~~ 298 (334)
T 1a5t_A 226 SGDWY---SLLAAL--NHEQAPARLHWLATLLMDALKRHHGA-AQVTNVDVPGLVAE-LANHLSPSRLQAILGDVCHIRE 298 (334)
T ss_dssp HCCCG---GGHHHH--CSTTHHHHHHHHHHHHHHHTCC-------CCCTTCHHHHHH-HHHHSCHHHHHHHHHHHHHHHH
T ss_pred ChHHH---HHHHHH--hcccHHHHHHHHHHHHHHHHHhccCC-ccccCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHH
Confidence 12211 122222 14688899999999999999876421 1110 0111111 2347899999999999999999
Q ss_pred Hhc--cCCCHHHHHHHHHHHcCC
Q 036794 739 QLR--MSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 739 qLK--~s~dprl~LE~lLLkLa~ 759 (1152)
++| .+.++++.||.++++++.
T Consensus 299 ~l~~~~~~n~~l~le~ll~~l~~ 321 (334)
T 1a5t_A 299 QLMSVTGINRELLITDLLLRIEH 321 (334)
T ss_dssp HHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHH
Confidence 999 788999999999999984
No 11
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.97 E-value=1.8e-30 Score=290.20 Aligned_cols=276 Identities=15% Similarity=0.152 Sum_probs=225.8
Q ss_pred CcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCC-C
Q 036794 425 GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVG-N 503 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas-~ 503 (1152)
||+++++.|.+.++.++ .++||||||+|+|||++|+++++... .|. ..++++.++++.+ .
T Consensus 1 g~~~~~~~L~~~i~~~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~-----------~~~-------~~~~d~~~l~~~~~~ 61 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE-GISILINGEDLSYPREVSLELPEYVE-----------KFP-------PKASDVLEIDPEGEN 61 (305)
T ss_dssp ---CHHHHHHHHHHTCS-SEEEEEECSSSSHHHHHHHHHHHHHH-----------TSC-------CCTTTEEEECCSSSC
T ss_pred ChHHHHHHHHHHHHCCC-CcEEEEECCCCCCHHHHHHHHHHhCc-----------hhh-------ccCCCEEEEcCCcCC
Confidence 78999999999999999 88999999999999999999998521 111 1456788888765 6
Q ss_pred CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCC
Q 036794 504 FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKM 583 (1152)
Q Consensus 504 ~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p 583 (1152)
.++++++++++.+...|+.++++||||||+|.|+.+++|+|+++||+|+.+++||++|+++.+++++|+|| ++.|+++
T Consensus 62 ~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l 139 (305)
T 2gno_A 62 IGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVN 139 (305)
T ss_dssp BCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECC
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred ChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH-----------HHhCCCCCHHHHHHHHhccchh-
Q 036794 584 KDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-----------SLLGQRISVPLVQELVGLISDE- 651 (1152)
Q Consensus 584 ~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkL-----------sLlg~~IT~EdV~elVg~v~ee- 651 (1152)
+.+++..||..++ .++++++ ..+.||+|.+++.++.. ..++ +.++|.++++...++
T Consensus 140 ~~~~i~~~L~~~~-----~i~~~~~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~~~---~~~~v~~~~~~~~~~~ 207 (305)
T 2gno_A 140 VPKEFRDLVKEKI-----GDLWEEL----PLLERDFKTALEAYKLGAEKLSGLMESLKVLE---TEKLLKKVLSKGLEGY 207 (305)
T ss_dssp CCHHHHHHHHHHH-----TTHHHHC----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHHSC---HHHHTTTTTCSHHHHH
T ss_pred CHHHHHHHHHHHh-----CCCHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcc---cHHHHHHHHccCCcch
Confidence 9999999999887 3777776 34689999998887532 1222 467888888877755
Q ss_pred -hHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCccc-HHHHH
Q 036794 652 -KLVDLLDLALSADTVNTVKNLRVIME--TGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEE-MEKLR 727 (1152)
Q Consensus 652 -~ifdLldAils~d~~~ALk~L~~LL~--~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s-~~kL~ 727 (1152)
++|++++++..+|...|+..+++|+. .|++| +..|.+++|.++... .+. .+.|+
T Consensus 208 ~~v~~l~~ai~~~~~~~a~~~~~~l~~~~~g~~~---~~~i~~~~r~l~~~~-------------------~~~~~~~l~ 265 (305)
T 2gno_A 208 LACRELLERFSKVESKEFFALFDQVTNTITGKDA---FLLIQRLTRIILHEN-------------------TWESVEDQK 265 (305)
T ss_dssp HHHHHHHHHHHHSCGGGHHHHHHHHHHHSCTHHH---HHHHHHHHHHHHHTS-------------------CCCSHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcCCCH---HHHHHHHHHHHHhhc-------------------hhhhHHHHH
Confidence 89999999999999999999999999 78888 455556666655211 222 33333
Q ss_pred HHHHHHHHHHHHhcc---CCCHHHHHHHHHHHcCC
Q 036794 728 QALKTLSEAEKQLRM---SNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 728 qaL~~L~eaD~qLK~---s~dprl~LE~lLLkLa~ 759 (1152)
.+..+|..+.. +.++.+.|+.++..+|.
T Consensus 266 ----~~~~~~~~~~~k~~g~~~~lql~~l~~~~~~ 296 (305)
T 2gno_A 266 ----SVSFLDSILRVKIANLNNKLTLMNILAIHRE 296 (305)
T ss_dssp ----HHHHHHHHHTCCGGGCCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 55555555544 88999999999999983
No 12
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.96 E-value=7.5e-29 Score=290.44 Aligned_cols=257 Identities=19% Similarity=0.307 Sum_probs=213.5
Q ss_pred ccchhhhhCCCCcCcccCcHHHH---HHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVA---QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~---q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
.++|.++|||.+|++++||++++ ..|..++..++. +.+||+||||||||++|++|++.+++.
T Consensus 13 ~~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~-~~vLL~GppGtGKTtlAr~ia~~~~~~-------------- 77 (447)
T 3pvs_A 13 FQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHL-HSMILWGPPGTGKTTLAEVIARYANAD-------------- 77 (447)
T ss_dssp -CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCC-CEEEEECSTTSSHHHHHHHHHHHTTCE--------------
T ss_pred cCChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCC-cEEEEECCCCCcHHHHHHHHHHHhCCC--------------
Confidence 36999999999999999999999 899999999988 569999999999999999999998654
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
+..+.. ...+...++++++.+...+..+.+.||||||+|.++...++.|+.+|++ ..++||++|+..
T Consensus 78 ----------f~~l~a-~~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n 144 (447)
T 3pvs_A 78 ----------VERISA-VTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTEN 144 (447)
T ss_dssp ----------EEEEET-TTCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSC
T ss_pred ----------eEEEEe-ccCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCC
Confidence 223322 2345777888888766555567789999999999999999999999998 568888888543
Q ss_pred --CcchHHHHccceEEEecCCChhHHHHHHHHHHHH-------cCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-
Q 036794 565 --DALPHIIISRCQKFFFPKMKDADIIYTLQWIASK-------EGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ- 634 (1152)
Q Consensus 565 --dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk-------eGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~- 634 (1152)
..+.++|.+||.++.|.+++.+++..+|..++.. .++.+++++++.|+.+++||+|.++|.|++++.+..
T Consensus 145 ~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~ 224 (447)
T 3pvs_A 145 PSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEV 224 (447)
T ss_dssp GGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCB
T ss_pred cccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccc
Confidence 3688999999999999999999999999999987 567799999999999999999999999999987743
Q ss_pred ------CCCHHHHHHHHhccc------h----hhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 036794 635 ------RISVPLVQELVGLIS------D----EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV 692 (1152)
Q Consensus 635 ------~IT~EdV~elVg~v~------e----e~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~q 692 (1152)
.||.++|.+++.... . +.+..+++++...|.+.|+.+|.+|+..|++|..|+..|...
T Consensus 225 ~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~ 298 (447)
T 3pvs_A 225 DDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAI 298 (447)
T ss_dssp CTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 499999999998753 1 345555666667999999999999999999999988877664
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.96 E-value=2.4e-28 Score=252.61 Aligned_cols=241 Identities=32% Similarity=0.574 Sum_probs=215.0
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
..+.+|.++|+|..|++++|++.+++.|..++..++.++.+||+||+|+|||++|+.+++.+.+.......+|+.|..|.
T Consensus 8 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (250)
T 1njg_A 8 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 87 (250)
T ss_dssp ---CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHH
T ss_pred hHHHHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 34678999999999999999999999999999999888899999999999999999999999887766668899999988
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+......+++.++.......+.+..+++.+...+..+++.+|||||+|.+....++.|++++++++.+++||++|+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp HHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred HHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 88777777777776655556677888887776666667789999999999999999999999999888999999999998
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~EdV~el 644 (1152)
.+.+++.+|+..+.|++++.+++.+++..++...++.+++++++.|+++++|++|.+.+++++++.++ +.||.++|.++
T Consensus 168 ~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 247 (250)
T 1njg_A 168 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 247 (250)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTSSBCHHHHHHH
T ss_pred hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCceecHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999987764 46999999988
Q ss_pred Hh
Q 036794 645 VG 646 (1152)
Q Consensus 645 Vg 646 (1152)
++
T Consensus 248 ~~ 249 (250)
T 1njg_A 248 LG 249 (250)
T ss_dssp SC
T ss_pred hC
Confidence 75
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.94 E-value=1.2e-25 Score=230.47 Aligned_cols=220 Identities=25% Similarity=0.415 Sum_probs=189.0
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
..+|.++|+|..|++++|++.+++.|..++..+..++ +||+||+|||||++|+.+++.+.+...
T Consensus 4 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------- 67 (226)
T 2chg_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDLFGENW--------------- 67 (226)
T ss_dssp CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGG---------------
T ss_pred hhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCe-EEEECCCCCCHHHHHHHHHHHHhcccc---------------
Confidence 4689999999999999999999999999999887666 899999999999999999999865421
Q ss_pred cCCCccceEEeCCCCCCCHHHHHHHHHHHhhCC-C-CCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 488 DRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR-P-PSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~~~vdeIreLle~a~~~P-~-~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
...++.++.....+.+.+...+....... . .+.+.+|||||++.+....++.|++++++++.+++||++|+.+.
T Consensus 68 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 68 ----RDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp ----GGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred ----ccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 11134444434445566666665543321 2 25678999999999999999999999999889999999999998
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elV 645 (1152)
.+.+++.+|+..+.|++++.+++..++..++...++.+++++++.|+..++||+|.+.+.|++++.+++.||.++|.+++
T Consensus 144 ~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~~~I~~~~v~~~~ 223 (226)
T 2chg_A 144 RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQIT 223 (226)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCBCHHHHHHHH
T ss_pred hcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCceecHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999888889999999988
Q ss_pred hc
Q 036794 646 GL 647 (1152)
Q Consensus 646 g~ 647 (1152)
+.
T Consensus 224 ~~ 225 (226)
T 2chg_A 224 AT 225 (226)
T ss_dssp HT
T ss_pred cC
Confidence 63
No 15
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.90 E-value=1.8e-23 Score=248.45 Aligned_cols=234 Identities=18% Similarity=0.247 Sum_probs=178.9
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhC----------------CCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRR----------------KVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~g----------------ri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
...++|++||+|.+|++|+|++.+++.|.+++... ...+++||+||||||||++|+++|+++++
T Consensus 24 ~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~ 103 (516)
T 1sxj_A 24 ASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY 103 (516)
T ss_dssp --CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred ccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34579999999999999999999999999998762 14468999999999999999999999865
Q ss_pred cCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHh--------------hCCCCCCceEEEEeCCCC
Q 036794 470 QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV--------------TSRPPSQYRIFVFDDCDT 535 (1152)
Q Consensus 470 ~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~--------------~~P~~a~~kVVIIDEID~ 535 (1152)
. +++++.........+...+..+. .......+.||||||+|.
T Consensus 104 ~------------------------~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~ 159 (516)
T 1sxj_A 104 D------------------------ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDG 159 (516)
T ss_dssp E------------------------EEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGG
T ss_pred C------------------------EEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCc
Confidence 4 23333222222222221111110 001225678999999999
Q ss_pred CCHHH---HHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036794 536 LSPDS---WSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIA 612 (1152)
Q Consensus 536 Ls~ea---qnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLA 612 (1152)
+.... .+.|++++++....+++|..+.....++ ++.+||..+.|++|+.+++.++|..++..+++.+++++++.|+
T Consensus 160 l~~~~~~~l~~L~~~l~~~~~~iIli~~~~~~~~l~-~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la 238 (516)
T 1sxj_A 160 MSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMR-PFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLI 238 (516)
T ss_dssp CCTTSTTHHHHHHHHHHHCSSCEEEEESCTTSSTTG-GGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhcCCCEEEEEcCCCCccch-hhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 97654 4889999988544444433333334444 5899999999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhcc---chhhHHHHHHHHHcCC
Q 036794 613 SRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLI---SDEKLVDLLDLALSAD 664 (1152)
Q Consensus 613 e~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v---~ee~ifdLldAils~d 664 (1152)
+.++||+|.+++.|+.++...+.|+.++|.+++... ....+|++++.++.++
T Consensus 239 ~~s~GdiR~~i~~L~~~~~~~~~It~~~v~~~~~~~~~~~~~~~f~~~~~il~~~ 293 (516)
T 1sxj_A 239 QTTRGDIRQVINLLSTISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQ 293 (516)
T ss_dssp HHTTTCHHHHHHHHTHHHHHSSCCCTTHHHHHHHHHHTTTTSHHHHHHHHHTBGG
T ss_pred HHcCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhccCCCCCHHHHHHHHhcCC
Confidence 999999999999999998878889999999888743 3457899999888754
No 16
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.89 E-value=1.7e-22 Score=225.09 Aligned_cols=212 Identities=20% Similarity=0.210 Sum_probs=167.2
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHh----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCC
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMR----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFC 481 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c 481 (1152)
.....|.++|+|.+|++|+|++.+++.|..++.. +.....+||+||+|||||++|+++++.+++.+.
T Consensus 14 ~~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~--------- 84 (338)
T 3pfi_A 14 SFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIK--------- 84 (338)
T ss_dssp ---------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE---------
T ss_pred chhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE---------
Confidence 3355899999999999999999999999988876 344556999999999999999999999765421
Q ss_pred CccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC---------
Q 036794 482 NSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP--------- 552 (1152)
Q Consensus 482 ~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp--------- 552 (1152)
.++.........+..++.. .+.+.+|||||++.++...++.|+++|++..
T Consensus 85 ---------------~~~~~~~~~~~~~~~~~~~------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~ 143 (338)
T 3pfi_A 85 ---------------TTAAPMIEKSGDLAAILTN------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGP 143 (338)
T ss_dssp ---------------EEEGGGCCSHHHHHHHHHT------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC--------
T ss_pred ---------------EecchhccchhHHHHHHHh------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCc
Confidence 1111111233445545443 2567899999999999999999999999742
Q ss_pred ---------CCEEEEEEcCCCCcchHHHHccc-eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Q 036794 553 ---------RRVVFILVSSSLDALPHIIISRC-QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA 622 (1152)
Q Consensus 553 ---------~~VifILaTN~~dkL~~aL~SR~-qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~A 622 (1152)
++++||++||....+.++|++|+ ..+.|++|+.+++..++...+...++.+++++++.|+..|+||+|.+
T Consensus 144 ~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l 223 (338)
T 3pfi_A 144 AAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIA 223 (338)
T ss_dssp -CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHH
T ss_pred cccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHH
Confidence 13789999999999999999999 68999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 623 EMTLEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 623 in~LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
.+.++.+..+ ...|+.+++..++..
T Consensus 224 ~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 224 LRLLKRVRDFADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 9999997433 335899988877643
No 17
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.88 E-value=8.6e-22 Score=221.43 Aligned_cols=238 Identities=18% Similarity=0.209 Sum_probs=171.0
Q ss_pred ccchhhhhCCCC-cCcccCcHHHHHH---HHHHHHhCCCC-cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCC
Q 036794 408 HQNLTQKYMPRT-FRDLVGQNLVAQA---LSNAVMRRKVG-LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCN 482 (1152)
Q Consensus 408 ~~~l~eKyRP~s-FddLVGQe~v~q~---Lk~aL~~gri~-~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~ 482 (1152)
...+.++|+|.. |++|+|++.++.. +...+..+..+ +++||+||||||||++|+++++.+.+........|..
T Consensus 30 ~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~-- 107 (368)
T 3uk6_A 30 GLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE-- 107 (368)
T ss_dssp SCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG--
T ss_pred ccCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh--
Confidence 345678899998 9999999988766 45666666654 6899999999999999999999998642211111111
Q ss_pred ccccccCCC-----------------------------------ccceEEe-CCCCCCCHHHHHHHHHHHhhC-CCCC--
Q 036794 483 SCISHDRGK-----------------------------------SRNIKEV-GPVGNFDFESILDLLDNMVTS-RPPS-- 523 (1152)
Q Consensus 483 ~c~~i~~g~-----------------------------------~~dviEI-daas~~~vdeIreLle~a~~~-P~~a-- 523 (1152)
+.....+. ..++..+ ..........++..+..+... ...+
T Consensus 108 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~ 186 (368)
T 3uk6_A 108 -IFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKA 186 (368)
T ss_dssp -GSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC-
T ss_pred -hhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccc
Confidence 00000000 0000000 000011134566665554321 1111
Q ss_pred --CceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEc-----------CCCCcchHHHHccceEEEecCCChhHHHH
Q 036794 524 --QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVS-----------SSLDALPHIIISRCQKFFFPKMKDADIIY 590 (1152)
Q Consensus 524 --~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaT-----------N~~dkL~~aL~SR~qvI~F~~p~~~EI~e 590 (1152)
.++||||||+|.|..+.++.|++++++++..++++.+. +.+..++++|++||..+.|++|+.+++..
T Consensus 187 ~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 187 EIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQ 266 (368)
T ss_dssp --CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHH
T ss_pred cccCceEEEhhccccChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHH
Confidence 13699999999999999999999999987776544443 12557889999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHh----C-CCCCHHHHHHHHhcc
Q 036794 591 TLQWIASKEGIEIDKDALKLIASRSD-GSLRDAEMTLEQLSLL----G-QRISVPLVQELVGLI 648 (1152)
Q Consensus 591 iL~~iakkeGl~Id~dALelLAe~s~-GDLR~Ain~LEkLsLl----g-~~IT~EdV~elVg~v 648 (1152)
+|..++...++.+++++++.|+.++. ||+|.+.++|+.+..+ + ..||.++|.+++...
T Consensus 267 il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 267 ILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999988 9999999999998654 2 369999999998763
No 18
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.88 E-value=2.6e-21 Score=213.44 Aligned_cols=208 Identities=18% Similarity=0.207 Sum_probs=166.4
Q ss_pred hhhhhCCCCcCcccCcHHHHHHHHHHHHh----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMR----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 411 l~eKyRP~sFddLVGQe~v~q~Lk~aL~~----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
+.++|+|.+|++++|++.+++.|..++.. +..+..+||+||+|||||++|+++++.+++..
T Consensus 2 ~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~--------------- 66 (324)
T 1hqc_A 2 EDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL--------------- 66 (324)
T ss_dssp ---CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---------------
T ss_pred CccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---------------
Confidence 35689999999999999999988887764 34556799999999999999999999986542
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC--------------
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-------------- 552 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-------------- 552 (1152)
..++........++...+.. ..+.+.+|||||++.++...++.|++++++..
T Consensus 67 ---------~~~~~~~~~~~~~l~~~l~~-----~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~ 132 (324)
T 1hqc_A 67 ---------RVTSGPAIEKPGDLAAILAN-----SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTI 132 (324)
T ss_dssp ---------EEECTTTCCSHHHHHHHHTT-----TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCE
T ss_pred ---------EEEeccccCChHHHHHHHHH-----hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhcccccccccc
Confidence 11111111122333333322 12566899999999999999999999999742
Q ss_pred ----CCEEEEEEcCCCCcchHHHHccc-eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 036794 553 ----RRVVFILVSSSLDALPHIIISRC-QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLE 627 (1152)
Q Consensus 553 ----~~VifILaTN~~dkL~~aL~SR~-qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LE 627 (1152)
.+++||++||....+.++|.+|+ .++.|++|+.+++..++...+...++.+++++++.|+.+++|++|.+.+.++
T Consensus 133 ~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~ 212 (324)
T 1hqc_A 133 RLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFR 212 (324)
T ss_dssp EEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred ccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 35789999999988989999999 5899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC-----CCCCHHHHHHHHhc
Q 036794 628 QLSLLG-----QRISVPLVQELVGL 647 (1152)
Q Consensus 628 kLsLlg-----~~IT~EdV~elVg~ 647 (1152)
.+..++ ..|+.+++.+++..
T Consensus 213 ~~~~~a~~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 213 RVRDFAQVAGEEVITRERALEALAA 237 (324)
T ss_dssp HHTTTSTTTSCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 986543 35999998887653
No 19
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.86 E-value=6.1e-21 Score=223.41 Aligned_cols=124 Identities=19% Similarity=0.287 Sum_probs=112.3
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEc---------CC----CCcchHHHHccceEEEecCCChhHHHHHH
Q 036794 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVS---------SS----LDALPHIIISRCQKFFFPKMKDADIIYTL 592 (1152)
Q Consensus 526 kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaT---------N~----~dkL~~aL~SR~qvI~F~~p~~~EI~eiL 592 (1152)
+|+||||+|+|+.+++++|+++||+++.+ +||++| ++ ++.++++|++||+.+.|++++.+++.++|
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 69999999999999999999999999888 688787 44 67899999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHh-----CCCCCHHHHHHHHhccch
Q 036794 593 QWIASKEGIEIDKDALKLIASRS-DGSLRDAEMTLEQLSLL-----GQRISVPLVQELVGLISD 650 (1152)
Q Consensus 593 ~~iakkeGl~Id~dALelLAe~s-~GDLR~Ain~LEkLsLl-----g~~IT~EdV~elVg~v~e 650 (1152)
+.++..+++.++++++.+|+..+ .|++|.++++|+++..+ ...|+.++|.++++...+
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d 439 (456)
T 2c9o_A 376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYD 439 (456)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcC
Confidence 99999999999999999999998 99999999999997433 246999999999877643
No 20
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.83 E-value=2.3e-19 Score=201.74 Aligned_cols=213 Identities=19% Similarity=0.209 Sum_probs=165.2
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhC----CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCC
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRR----KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFC 481 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~g----ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c 481 (1152)
..|++|+++|+|++|++++|++.++..|..++..+ ..+..++|+||+|+||||+|++|+..+++....
T Consensus 10 ~~~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~-------- 81 (334)
T 1in4_A 10 TVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV-------- 81 (334)
T ss_dssp -------CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEE--------
T ss_pred HHHHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE--------
Confidence 45788999999999999999999999998887653 444569999999999999999999999764211
Q ss_pred CccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC---------
Q 036794 482 NSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP--------- 552 (1152)
Q Consensus 482 ~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp--------- 552 (1152)
..........++..++... ..+.|+||||++.+....++.|+..++...
T Consensus 82 ----------------~sg~~~~~~~~l~~~~~~~------~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~ 139 (334)
T 1in4_A 82 ----------------TSGPVLVKQGDMAAILTSL------ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGP 139 (334)
T ss_dssp ----------------EETTTCCSHHHHHHHHHHC------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC------
T ss_pred ----------------EechHhcCHHHHHHHHHHc------cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCc
Confidence 0000111223444444332 345799999999999888888888776532
Q ss_pred ---------CCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Q 036794 553 ---------RRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA 622 (1152)
Q Consensus 553 ---------~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~A 622 (1152)
..+.||.+++.+..+.+.+++||. .+.|.+++.+++.++|+..++..++.++++++..|+.++.|++|.+
T Consensus 140 ~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a 219 (334)
T 1in4_A 140 SAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIA 219 (334)
T ss_dssp ---------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHH
T ss_pred ccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHH
Confidence 236778889999999999999997 5889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-----CCCCCHHHHHHHHhcc
Q 036794 623 EMTLEQLSLL-----GQRISVPLVQELVGLI 648 (1152)
Q Consensus 623 in~LEkLsLl-----g~~IT~EdV~elVg~v 648 (1152)
.+.|+++..+ .+.||.+++.+++...
T Consensus 220 ~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 220 IRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 9999987433 2469999999988754
No 21
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.81 E-value=3.4e-19 Score=186.33 Aligned_cols=209 Identities=19% Similarity=0.235 Sum_probs=156.8
Q ss_pred ccchhhhhCC-CCcCcccC---cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 408 HQNLTQKYMP-RTFRDLVG---QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 408 ~~~l~eKyRP-~sFddLVG---Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
..+|..+|+| .+|++++| ++.++..|..++..+ ....+||+||+|||||++|+++++.+......
T Consensus 14 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~---------- 82 (242)
T 3bos_A 14 QLSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGD-GVQAIYLWGPVKSGRTHLIHAACARANELERR---------- 82 (242)
T ss_dssp CCEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTC-SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCC----------
T ss_pred hcCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCe----------
Confidence 3467788888 79999997 357888888888765 45579999999999999999999998754211
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHH--HHHHHHHHhhCC--CCEEEEE
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDS--WSAISKVVDRAP--RRVVFIL 559 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~ea--qnaLLklLEepp--~~VifIL 559 (1152)
+..++..... +.+.+.+. ....+.+|||||++.+.... ++.|+.+++... ..+.+|+
T Consensus 83 -----------~~~~~~~~~~--~~~~~~~~------~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~ 143 (242)
T 3bos_A 83 -----------SFYIPLGIHA--SISTALLE------GLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIV 143 (242)
T ss_dssp -----------EEEEEGGGGG--GSCGGGGT------TGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEE
T ss_pred -----------EEEEEHHHHH--HHHHHHHH------hccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 1111100000 00001111 11345799999999997765 788888877632 2334666
Q ss_pred EcCCCC----cchHHHHccc---eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 036794 560 VSSSLD----ALPHIIISRC---QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL 632 (1152)
Q Consensus 560 aTN~~d----kL~~aL~SR~---qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl 632 (1152)
+++... .+.+.+.+|+ ..+.|++++.+++.+++..++...++.+++++++.|+.+++||+|.+.+.|+++..+
T Consensus 144 ~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~ 223 (242)
T 3bos_A 144 SASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKA 223 (242)
T ss_dssp EESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 666432 4558899999 899999999999999999999999999999999999999999999999999998655
Q ss_pred ----CCCCCHHHHHHHHh
Q 036794 633 ----GQRISVPLVQELVG 646 (1152)
Q Consensus 633 ----g~~IT~EdV~elVg 646 (1152)
+..||.++|.+++.
T Consensus 224 a~~~~~~It~~~v~~~l~ 241 (242)
T 3bos_A 224 SMVHQRKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHTCCCCHHHHHHHHT
T ss_pred HHHhCCCCcHHHHHHHhh
Confidence 45699999998874
No 22
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.80 E-value=3.3e-18 Score=187.22 Aligned_cols=219 Identities=21% Similarity=0.235 Sum_probs=161.8
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCC
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKP 477 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~ep 477 (1152)
..|.++|+|.+|++|+|++.+++.|..++.. +..+.++||+||||||||++|+++|+.+++.....
T Consensus 9 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i--- 85 (297)
T 3b9p_A 9 DEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNI--- 85 (297)
T ss_dssp TTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEE---
T ss_pred HHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe---
Confidence 3567788999999999999999999988754 23457899999999999999999999986542111
Q ss_pred CCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HHHHHHHHH
Q 036794 478 CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PDSWSAISK 546 (1152)
Q Consensus 478 cg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~eaqnaLLk 546 (1152)
.|..+... ........++.++..+.. ..+.||||||+|.+. ...++.|+.
T Consensus 86 -----~~~~l~~~----------~~~~~~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 146 (297)
T 3b9p_A 86 -----SAASLTSK----------YVGDGEKLVRALFAVARH----MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLV 146 (297)
T ss_dssp -----ESTTTSSS----------SCSCHHHHHHHHHHHHHH----TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHH
T ss_pred -----eHHHHhhc----------ccchHHHHHHHHHHHHHH----cCCcEEEeccHHHhccccccCcchHHHHHHHHHHH
Confidence 11111100 001123345555555433 345899999998873 345678888
Q ss_pred HHhhCC-----CCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHH
Q 036794 547 VVDRAP-----RRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLR 620 (1152)
Q Consensus 547 lLEepp-----~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR 620 (1152)
.++..+ ..++||++||.++.+++++.+||. .+.|+.|+.++...++..++...+..+++++++.|+..+.|..+
T Consensus 147 ~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~ 226 (297)
T 3b9p_A 147 EFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSG 226 (297)
T ss_dssp HHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCH
T ss_pred HHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCH
Confidence 888754 468999999999999999999995 68899999999999999999988888999999999999988665
Q ss_pred -HHHHHHHHHHHh-----------------CCCCCHHHHHHHHhccc
Q 036794 621 -DAEMTLEQLSLL-----------------GQRISVPLVQELVGLIS 649 (1152)
Q Consensus 621 -~Ain~LEkLsLl-----------------g~~IT~EdV~elVg~v~ 649 (1152)
++.++++.++.. ...|+.+|+.+++..+.
T Consensus 227 ~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 273 (297)
T 3b9p_A 227 SDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIR 273 (297)
T ss_dssp HHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcC
Confidence 555666654322 12478888877776543
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.80 E-value=1e-18 Score=200.06 Aligned_cols=201 Identities=20% Similarity=0.238 Sum_probs=150.8
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCC
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQP 475 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~ 475 (1152)
....|.++|+|.+|++|+|++.+++.|..++.. +..+.++||+||+|||||++|++||+.+++.....
T Consensus 101 ~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v- 179 (389)
T 3vfd_A 101 IMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNI- 179 (389)
T ss_dssp GGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE-
T ss_pred HHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe-
Confidence 345788899999999999999999999988743 23456899999999999999999999977543211
Q ss_pred CCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCC-----------CHHHHHHH
Q 036794 476 KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTL-----------SPDSWSAI 544 (1152)
Q Consensus 476 epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~L-----------s~eaqnaL 544 (1152)
.|..+.. . .+ ......+..++..+... ...||||||+|.| ....++.|
T Consensus 180 -------~~~~l~~-----~-~~----g~~~~~~~~~~~~a~~~----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~l 238 (389)
T 3vfd_A 180 -------SAASLTS-----K-YV----GEGEKLVRALFAVAREL----QPSIIFIDQVDSLLCERREGEHDASRRLKTEF 238 (389)
T ss_dssp -------CSCCC-----------------CHHHHHHHHHHHHHS----SSEEEEEETGGGGC--------CTHHHHHHHH
T ss_pred -------eHHHhhc-----c-cc----chHHHHHHHHHHHHHhc----CCeEEEEECchhhcccCCCccchHHHHHHHHH
Confidence 1111100 0 00 01233456666665432 3479999999988 34456788
Q ss_pred HHHHhh----CCCCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCH
Q 036794 545 SKVVDR----APRRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSL 619 (1152)
Q Consensus 545 LklLEe----pp~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDL 619 (1152)
+..++. .+.+++||++||.++.+++++++||. .+.|+.|+.+++..+|..++...+..++++++..|+..+.|..
T Consensus 239 l~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~ 318 (389)
T 3vfd_A 239 LIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYS 318 (389)
T ss_dssp HHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCC
T ss_pred HHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCC
Confidence 888875 35679999999999999999999996 6999999999999999999999999999999999999999966
Q ss_pred HHHHHH-HHHH
Q 036794 620 RDAEMT-LEQL 629 (1152)
Q Consensus 620 R~Ain~-LEkL 629 (1152)
+..++. +..+
T Consensus 319 ~~~l~~L~~~a 329 (389)
T 3vfd_A 319 GSDLTALAKDA 329 (389)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 644444 4443
No 24
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.79 E-value=3e-17 Score=184.37 Aligned_cols=247 Identities=18% Similarity=0.118 Sum_probs=169.8
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHh---CCCCc--EEEEEcCCCchHHHHHHHHHHHHcccC-CCC-CCCCCC
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMR---RKVGL--LYVFYGPHGTGKTSCARIFARALNCQS-LEQ-PKPCGF 480 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~---gri~~--~yLL~GPpGTGKTtlARaLAkeL~~~~-~e~-~epcg~ 480 (1152)
..+|..+|+| ++++|++..++.|..++.. +..+. .++|+||+|||||++++.+++.+.+.. ... ...|..
T Consensus 7 ~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 7 DSVFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp GGGGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred HhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 4467788987 7899999999999888876 44445 799999999999999999999986541 100 001111
Q ss_pred CCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC----CCEE
Q 036794 481 CNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP----RRVV 556 (1152)
Q Consensus 481 c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp----~~Vi 556 (1152)
+.....+.......+....+........+.+.+...... .+.+.||||||++.+....+..|++++++.+ .++.
T Consensus 84 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~ 161 (389)
T 1fnn_A 84 YRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRE--RDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIA 161 (389)
T ss_dssp CCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH--TTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEE
T ss_pred CCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhh--cCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEE
Confidence 000000000000000000000112233333333222111 1446799999999999999999999998743 5899
Q ss_pred EEEEcCCC---CcchHHHHccce--EEEecCCChhHHHHHHHHHHHHc--CCCCCHHHHHHHHHhc---------CCCHH
Q 036794 557 FILVSSSL---DALPHIIISRCQ--KFFFPKMKDADIIYTLQWIASKE--GIEIDKDALKLIASRS---------DGSLR 620 (1152)
Q Consensus 557 fILaTN~~---dkL~~aL~SR~q--vI~F~~p~~~EI~eiL~~iakke--Gl~Id~dALelLAe~s---------~GDLR 620 (1152)
||++|+.+ ..+.+.+.+|+. .+.|++++.+++.+++...+... ...+++++++.++..+ +||+|
T Consensus 162 iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r 241 (389)
T 1fnn_A 162 LVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDAR 241 (389)
T ss_dssp EEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHH
T ss_pred EEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHH
Confidence 99999987 567788889987 69999999999999999988762 3479999999999998 89999
Q ss_pred HHHHHHHHHHHh-----CCCCCHHHHHHHHhccchhhHHHHHHH
Q 036794 621 DAEMTLEQLSLL-----GQRISVPLVQELVGLISDEKLVDLLDL 659 (1152)
Q Consensus 621 ~Ain~LEkLsLl-----g~~IT~EdV~elVg~v~ee~ifdLldA 659 (1152)
.+.+.++.+... ...|+.++|.+++.....+.+.+.++.
T Consensus 242 ~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~ 285 (389)
T 1fnn_A 242 LAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIG 285 (389)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHc
Confidence 999999987654 246999999888776555444444443
No 25
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.79 E-value=4.6e-18 Score=190.23 Aligned_cols=234 Identities=19% Similarity=0.216 Sum_probs=159.9
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHh---CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC--CCCCCCCCC
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMR---RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE--QPKPCGFCN 482 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~---gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e--~~epcg~c~ 482 (1152)
...|..+|.| ++++|++..++.|..++.. +..+..++|+||+|||||++|+.+++.+...... ...++. ..
T Consensus 9 ~~~l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~-~i 84 (387)
T 2v1u_A 9 RWVLLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPI-YV 84 (387)
T ss_dssp HHHHSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEE-EE
T ss_pred HHhcCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEE-EE
Confidence 3456667876 7899999999999988865 3555679999999999999999999988432100 000000 00
Q ss_pred ccccccCCC--ccc-eEEeC---CCCCCCHHHHH-HHHHHHhhCCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhhC--
Q 036794 483 SCISHDRGK--SRN-IKEVG---PVGNFDFESIL-DLLDNMVTSRPPSQYRIFVFDDCDTLSPD--SWSAISKVVDRA-- 551 (1152)
Q Consensus 483 ~c~~i~~g~--~~d-viEId---aas~~~vdeIr-eLle~a~~~P~~a~~kVVIIDEID~Ls~e--aqnaLLklLEep-- 551 (1152)
+|....... ... +..++ +........+. .+.+.+. ..+.+.||||||+|.+... .++.|..+++..
T Consensus 85 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~ 161 (387)
T 2v1u_A 85 NARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS---RLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQE 161 (387)
T ss_dssp ETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT---TSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGC
T ss_pred ECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEccHhhhcccCCCChHHHhHhhchhh
Confidence 111100000 000 00000 00111233322 2333322 1244679999999999776 667777776643
Q ss_pred ---CCCEEEEEEcCCC---CcchHHHHccc--eEEEecCCChhHHHHHHHHHHHH--cCCCCCHHHHHHHHHhcC---CC
Q 036794 552 ---PRRVVFILVSSSL---DALPHIIISRC--QKFFFPKMKDADIIYTLQWIASK--EGIEIDKDALKLIASRSD---GS 618 (1152)
Q Consensus 552 ---p~~VifILaTN~~---dkL~~aL~SR~--qvI~F~~p~~~EI~eiL~~iakk--eGl~Id~dALelLAe~s~---GD 618 (1152)
+.+++||++||.+ ..+.+.+.+|+ ..+.|++++.+++..++...+.. .+..+++++++.++.++. ||
T Consensus 162 ~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~ 241 (387)
T 2v1u_A 162 LGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGD 241 (387)
T ss_dssp C-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCC
T ss_pred cCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccC
Confidence 5688999999987 57888999999 68999999999999999999876 567899999999999987 99
Q ss_pred HHHHHHHHHHHHHhC-----CCCCHHHHHHHHhcc
Q 036794 619 LRDAEMTLEQLSLLG-----QRISVPLVQELVGLI 648 (1152)
Q Consensus 619 LR~Ain~LEkLsLlg-----~~IT~EdV~elVg~v 648 (1152)
+|.+++.++.+...+ ..|+.++|.+++...
T Consensus 242 ~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 242 ARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 999999999986542 469999999887665
No 26
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.78 E-value=1.5e-18 Score=193.84 Aligned_cols=199 Identities=17% Similarity=0.184 Sum_probs=152.2
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHH-----------hCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCC
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVM-----------RRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKP 477 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~-----------~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~ep 477 (1152)
..|..++.+.+|++|+|++.+++.|..++. ....+.++|||||||||||++|+++|+++++.....
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v--- 82 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV--- 82 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE---
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE---
Confidence 356677888899999999999999998883 133456899999999999999999999986542111
Q ss_pred CCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHH
Q 036794 478 CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISK 546 (1152)
Q Consensus 478 cg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLk 546 (1152)
.|..+.. .........++.++..+.. ..+.||||||+|.+.. ..++.|+.
T Consensus 83 -----~~~~l~~----------~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 143 (322)
T 3eie_A 83 -----SSSDLVS----------KWMGESEKLVKQLFAMARE----NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLV 143 (322)
T ss_dssp -----EHHHHHT----------TTGGGHHHHHHHHHHHHHH----TSSEEEEEECGGGGSCC------CCTHHHHHHHHH
T ss_pred -----chHHHhh----------cccchHHHHHHHHHHHHHh----cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHH
Confidence 1111100 0001112345666666543 2458999999998854 34678888
Q ss_pred HHhh---CCCCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHH
Q 036794 547 VVDR---APRRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRD 621 (1152)
Q Consensus 547 lLEe---pp~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~ 621 (1152)
.++. ...+++||++||.++.+++++++||. .+.|+.|+.+++.++++.++...+..++++.+..|+..+.| +.++
T Consensus 144 ~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~d 223 (322)
T 3eie_A 144 QMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSD 223 (322)
T ss_dssp HHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHH
T ss_pred HhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHH
Confidence 8874 45789999999999999999999996 58899999999999999999988888999999999999887 6777
Q ss_pred HHHHHHHH
Q 036794 622 AEMTLEQL 629 (1152)
Q Consensus 622 Ain~LEkL 629 (1152)
+.+++..+
T Consensus 224 i~~l~~~a 231 (322)
T 3eie_A 224 IAVVVKDA 231 (322)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777655
No 27
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.78 E-value=2e-18 Score=189.41 Aligned_cols=192 Identities=16% Similarity=0.166 Sum_probs=147.0
Q ss_pred cccCcHHHHHHHHHHHHh--------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 422 DLVGQNLVAQALSNAVMR--------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~--------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
+|+|++.+++.|.+.+.. +.....+||+||||||||++|+++++.+.+.......++.++. |..+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT-RDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-GGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-HHHh
Confidence 799999999999877653 4555679999999999999999999999765322111211111 1111
Q ss_pred cCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCC---------CHHHHHHHHHHHhhCCCCEEEE
Q 036794 488 DRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTL---------SPDSWSAISKVVDRAPRRVVFI 558 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~L---------s~eaqnaLLklLEepp~~VifI 558 (1152)
. ..........+..++..+ .+.||||||+|.+ ....++.|+++|++.+.+++||
T Consensus 111 ~----------~~~~g~~~~~~~~~~~~~-------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i 173 (309)
T 3syl_A 111 V----------GQYIGHTAPKTKEVLKRA-------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVI 173 (309)
T ss_dssp C----------CSSTTCHHHHHHHHHHHH-------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEE
T ss_pred h----------hhcccccHHHHHHHHHhc-------CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEE
Confidence 0 000011123455555554 2469999999977 7788999999999988899999
Q ss_pred EEcCCCC-----cchHHHHccc-eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHh--------cCCCHHHHHH
Q 036794 559 LVSSSLD-----ALPHIIISRC-QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASR--------SDGSLRDAEM 624 (1152)
Q Consensus 559 LaTN~~d-----kL~~aL~SR~-qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~--------s~GDLR~Ain 624 (1152)
++|+... .+.++|++|| ..+.|++|+.+++..++..++.+.++.+++++++.++.+ +.||+|.+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~ 253 (309)
T 3syl_A 174 LAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRN 253 (309)
T ss_dssp EEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHH
T ss_pred EeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHH
Confidence 9997543 2457899999 689999999999999999999999999999999999985 6699999999
Q ss_pred HHHHHHH
Q 036794 625 TLEQLSL 631 (1152)
Q Consensus 625 ~LEkLsL 631 (1152)
.|+.++.
T Consensus 254 ~l~~a~~ 260 (309)
T 3syl_A 254 ALDRARL 260 (309)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999864
No 28
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.77 E-value=7.2e-18 Score=181.35 Aligned_cols=213 Identities=17% Similarity=0.185 Sum_probs=156.9
Q ss_pred hhhhhCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCC
Q 036794 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCG 479 (1152)
Q Consensus 411 l~eKyRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg 479 (1152)
|.+++.+.+|++|+|++.+++.|...+.. ...+.++||+||+|||||++|+++++.+++.....
T Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i----- 76 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI----- 76 (257)
T ss_dssp EEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE-----
T ss_pred CCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE-----
Confidence 67788999999999999999988876543 23466899999999999999999999886432111
Q ss_pred CCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHH
Q 036794 480 FCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAIS 545 (1152)
Q Consensus 480 ~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLL 545 (1152)
.|..+... ........++.+++.+.. ..+.++||||+|.+.. ...+.|+
T Consensus 77 ---~~~~~~~~----------~~~~~~~~~~~~~~~a~~----~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll 139 (257)
T 1lv7_A 77 ---SGSDFVEM----------FVGVGASRVRDMFEQAKK----AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQML 139 (257)
T ss_dssp ---CSCSSTTS----------CCCCCHHHHHHHHHHHHT----TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHH
T ss_pred ---eHHHHHHH----------hhhhhHHHHHHHHHHHHH----cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHH
Confidence 11111000 011234567777777642 2347999999977642 3456677
Q ss_pred HHHhh--CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-C
Q 036794 546 KVVDR--APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASRSDG-S 618 (1152)
Q Consensus 546 klLEe--pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~s~G-D 618 (1152)
..++. ...++++|++||.++.+++++.+ |+. .+.|+.|+.++..++++.+++... +.+++ +..++..+.| +
T Consensus 140 ~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~~~la~~~~G~~ 217 (257)
T 1lv7_A 140 VEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPGFS 217 (257)
T ss_dssp HHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCC
T ss_pred HHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHHcCCCC
Confidence 77775 35679999999999989998887 765 588999999999999988876543 44443 6788899999 9
Q ss_pred HHHHHHHHHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 619 LRDAEMTLEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 619 LR~Ain~LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
.|++.+.++.++.+ ...|+.+++.+++..
T Consensus 218 ~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 218 GADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 99999999997655 246999999888754
No 29
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.77 E-value=1.8e-17 Score=186.47 Aligned_cols=233 Identities=16% Similarity=0.171 Sum_probs=159.6
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHh---CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCC---CC-CCCCCC
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMR---RKVGLLYVFYGPHGTGKTSCARIFARALNCQSL---EQ-PKPCGF 480 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~---gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~---e~-~epcg~ 480 (1152)
...|..+|+| ++++|++..++.|..++.. +..+..++|+||+|||||++|+++++.+..... .. ..++ .
T Consensus 10 ~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~-~ 85 (384)
T 2qby_B 10 KVFIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQ-A 85 (384)
T ss_dssp TTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEE-E
T ss_pred HhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceE-E
Confidence 4577888987 7899999999988877765 555678999999999999999999998743210 00 0000 0
Q ss_pred CCcccccc-CCC------ccceEEeC-CCCCCCHHH-HHHHHHHHhhCCCCCCceEEEEeCCCCCCHHH-HHH-HHHHHh
Q 036794 481 CNSCISHD-RGK------SRNIKEVG-PVGNFDFES-ILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDS-WSA-ISKVVD 549 (1152)
Q Consensus 481 c~~c~~i~-~g~------~~dviEId-aas~~~vde-IreLle~a~~~P~~a~~kVVIIDEID~Ls~ea-qna-LLklLE 549 (1152)
..+|.... ... ...+.... +........ +..+...+. ....||||||+|.+.... ++. |..+++
T Consensus 86 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~vlilDEi~~l~~~~~~~~~l~~l~~ 160 (384)
T 2qby_B 86 YVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-----NIRAIIYLDEVDTLVKRRGGDIVLYQLLR 160 (384)
T ss_dssp EEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-----SSCEEEEEETTHHHHHSTTSHHHHHHHHT
T ss_pred EEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-----cCCCEEEEECHHHhccCCCCceeHHHHhc
Confidence 01111110 000 00000000 000111222 222332221 122399999999987552 455 555555
Q ss_pred hCCCCEEEEEEcCCC---CcchHHHHccc-eEEEecCCChhHHHHHHHHHHHH--cCCCCCHHHHHHHHHhcC---CCHH
Q 036794 550 RAPRRVVFILVSSSL---DALPHIIISRC-QKFFFPKMKDADIIYTLQWIASK--EGIEIDKDALKLIASRSD---GSLR 620 (1152)
Q Consensus 550 epp~~VifILaTN~~---dkL~~aL~SR~-qvI~F~~p~~~EI~eiL~~iakk--eGl~Id~dALelLAe~s~---GDLR 620 (1152)
.. .++.||++|+.. ..+.+.+.+|+ ..+.|++++.+++.+++..++.. .+..+++++++.++.+++ ||+|
T Consensus 161 ~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r 239 (384)
T 2qby_B 161 SD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDAR 239 (384)
T ss_dssp SS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHH
T ss_pred CC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHH
Confidence 44 789999999987 56888899995 68999999999999999998875 456799999999999987 9999
Q ss_pred HHHHHHHHHHHhC---CCCCHHHHHHHHhccch
Q 036794 621 DAEMTLEQLSLLG---QRISVPLVQELVGLISD 650 (1152)
Q Consensus 621 ~Ain~LEkLsLlg---~~IT~EdV~elVg~v~e 650 (1152)
.+++.|+.+...+ ..|+.++|.+++.....
T Consensus 240 ~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~ 272 (384)
T 2qby_B 240 KAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ 272 (384)
T ss_dssp HHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc
Confidence 9999999987664 46999999998876543
No 30
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.77 E-value=4.3e-18 Score=193.25 Aligned_cols=199 Identities=17% Similarity=0.191 Sum_probs=151.2
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPC 478 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epc 478 (1152)
.+.++|+|.+|++|+|++.+++.|.+++.. +..+..+||+||+|||||++|+++|+.+++.....
T Consensus 73 ~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i---- 148 (357)
T 3d8b_A 73 EIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSI---- 148 (357)
T ss_dssp HTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE----
T ss_pred hcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEE----
Confidence 355678899999999999999999988763 45567899999999999999999999986542111
Q ss_pred CCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHH
Q 036794 479 GFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKV 547 (1152)
Q Consensus 479 g~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLkl 547 (1152)
.|..+... ........++.++..+.. ..+.||||||+|.|.. ..++.|+..
T Consensus 149 ----~~~~l~~~----------~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~ 210 (357)
T 3d8b_A 149 ----SASSLTSK----------WVGEGEKMVRALFAVARC----QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQ 210 (357)
T ss_dssp ----EGGGGCCS----------STTHHHHHHHHHHHHHHH----TCSEEEEEETHHHHTBC------CHHHHHHHHHHHH
T ss_pred ----ehHHhhcc----------ccchHHHHHHHHHHHHHh----cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHH
Confidence 11111100 000112345555555432 3458999999988732 346678888
Q ss_pred Hhh----CCCCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHH
Q 036794 548 VDR----APRRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRD 621 (1152)
Q Consensus 548 LEe----pp~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~ 621 (1152)
|+. ...+++||++||.++.+++++++||. .+.|+.|+.+++..++..++...++.+++++++.|+..+.| ..++
T Consensus 211 l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~d 290 (357)
T 3d8b_A 211 LDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGAD 290 (357)
T ss_dssp HHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHH
T ss_pred HhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHH
Confidence 875 35689999999999999999999997 68999999999999999999998999999999999999988 6666
Q ss_pred HHHHHHHHH
Q 036794 622 AEMTLEQLS 630 (1152)
Q Consensus 622 Ain~LEkLs 630 (1152)
+.++++.+.
T Consensus 291 l~~l~~~a~ 299 (357)
T 3d8b_A 291 MTQLCREAS 299 (357)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666543
No 31
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.2e-17 Score=192.86 Aligned_cols=208 Identities=18% Similarity=0.225 Sum_probs=152.9
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
...+|+||.|.+.+++.|++++.- -..+.+||||||||||||++|+++|.++++.+....
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~-------- 214 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS-------- 214 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE--------
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE--------
Confidence 345899999999999999987753 245568999999999999999999999987632110
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHh
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKVVD 549 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLklLE 549 (1152)
+..+ +......+...+++++..+... .+.||||||+|.+.. ...+.||..|+
T Consensus 215 ~s~l----------~sk~vGese~~vr~lF~~Ar~~----aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 280 (405)
T 4b4t_J 215 GAEL----------VQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLD 280 (405)
T ss_dssp GGGG----------SCSSTTHHHHHHHHHHHHHHHT----CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHH
T ss_pred hHHh----------hccccchHHHHHHHHHHHHHHh----CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhh
Confidence 0000 0001112245688888887654 347999999999842 13456777777
Q ss_pred h--CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHH
Q 036794 550 R--APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-SLRDA 622 (1152)
Q Consensus 550 e--pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-DLR~A 622 (1152)
. ...+++||++||.++.|+++|++ |+. .|.|+.|+.+++.++++.+++...+ +++ .++.||..+.| +..++
T Consensus 281 g~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l--~~dvdl~~lA~~t~G~SGADi 358 (405)
T 4b4t_J 281 GFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL--TRGINLRKVAEKMNGCSGADV 358 (405)
T ss_dssp TTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC--CSSCCHHHHHHHCCSCCHHHH
T ss_pred ccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC--CccCCHHHHHHHCCCCCHHHH
Confidence 4 45689999999999999999998 776 6999999999999999988776543 332 37888998877 77777
Q ss_pred HHHHHHHHHh---C--CCCCHHHHHHHHhc
Q 036794 623 EMTLEQLSLL---G--QRISVPLVQELVGL 647 (1152)
Q Consensus 623 in~LEkLsLl---g--~~IT~EdV~elVg~ 647 (1152)
.+++..+++. . ..|+.+|+..++..
T Consensus 359 ~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 359 KGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 7777776544 2 24888888777654
No 32
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.77 E-value=3e-18 Score=187.04 Aligned_cols=212 Identities=21% Similarity=0.254 Sum_probs=150.1
Q ss_pred CcccCcHHHHHHHHHHHHh-------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 421 RDLVGQNLVAQALSNAVMR-------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~-------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
++++|++.+++.|..++.. +..++.+||+||||||||++|+++++.+++.... ..|..+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~--------i~~~~~ 86 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK--------VEATKF 86 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEE--------EEGGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE--------Ecchhc
Confidence 4689999999999988865 3456679999999999999999999998654211 111111
Q ss_pred cCCCccceEEeCCCCCCCHHHHHHHHHHHhhCC-CCCCceEEEEeCCCCCCHHH------------HHHHHHHHhhC---
Q 036794 488 DRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR-PPSQYRIFVFDDCDTLSPDS------------WSAISKVVDRA--- 551 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~~~vdeIreLle~a~~~P-~~a~~kVVIIDEID~Ls~ea------------qnaLLklLEep--- 551 (1152)
....+ + +......+.+++......- ....+.||||||+|.+.... ++.|+++|++.
T Consensus 87 ~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 158 (310)
T 1ofh_A 87 TEVGY-----V---GKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVS 158 (310)
T ss_dssp SSCCS-----G---GGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEE
T ss_pred ccCCc-----c---CccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEe
Confidence 11000 0 0011123444443210000 00135799999999998664 88999999973
Q ss_pred -------CCCEEEEEEc----CCCCcchHHHHccce-EEEecCCChhHHHHHHHH-----------HHHHcCC--CCCHH
Q 036794 552 -------PRRVVFILVS----SSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQW-----------IASKEGI--EIDKD 606 (1152)
Q Consensus 552 -------p~~VifILaT----N~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~-----------iakkeGl--~Id~d 606 (1152)
..+++||+++ +.+..++++|.+||. .+.|++|+.+++..+++. .+...+. .++++
T Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (310)
T 1ofh_A 159 TKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTD 238 (310)
T ss_dssp ETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHH
T ss_pred cccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHH
Confidence 3578888885 456678999999996 599999999999998872 3334553 68999
Q ss_pred HHHHHHHhc--------CCCHHHHHHHHHHHHH-----h---CC---CCCHHHHHHHHhcc
Q 036794 607 ALKLIASRS--------DGSLRDAEMTLEQLSL-----L---GQ---RISVPLVQELVGLI 648 (1152)
Q Consensus 607 ALelLAe~s--------~GDLR~Ain~LEkLsL-----l---g~---~IT~EdV~elVg~v 648 (1152)
++++|+.++ .||+|.+.+.|+++.. . .+ .||.++|.+++...
T Consensus 239 a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 239 AVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred HHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 999999996 7999999999999741 1 11 39999999988754
No 33
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.76 E-value=1.4e-17 Score=189.15 Aligned_cols=201 Identities=17% Similarity=0.178 Sum_probs=148.0
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCC
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKP 477 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~ep 477 (1152)
..+..++.+.+|++|+|++.+++.|..++.. ...++++|||||||||||++|++||+++++.....
T Consensus 39 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v--- 115 (355)
T 2qp9_X 39 SAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV--- 115 (355)
T ss_dssp --------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE---
T ss_pred hhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe---
Confidence 3456678888999999999999999988742 24456799999999999999999999987542111
Q ss_pred CCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHH
Q 036794 478 CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISK 546 (1152)
Q Consensus 478 cg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLk 546 (1152)
.|..+... ........++.++..+.. ..+.||||||+|.+.. ..++.|+.
T Consensus 116 -----~~~~l~~~----------~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 176 (355)
T 2qp9_X 116 -----SSSDLVSK----------WMGESEKLVKQLFAMARE----NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLV 176 (355)
T ss_dssp -----EHHHHHSC----------C---CHHHHHHHHHHHHH----TSSEEEEEECGGGGTC------CTHHHHHHHHHHH
T ss_pred -----eHHHHhhh----------hcchHHHHHHHHHHHHHH----cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHH
Confidence 11111100 001123445666665543 3458999999999863 24678888
Q ss_pred HHhh---CCCCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHH
Q 036794 547 VVDR---APRRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRD 621 (1152)
Q Consensus 547 lLEe---pp~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~ 621 (1152)
.|+. ....++||++||.++.+++++++||. .+.|+.|+.+++..+|+.++...+..+++..++.|+..+.| +.++
T Consensus 177 ~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~d 256 (355)
T 2qp9_X 177 QMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSD 256 (355)
T ss_dssp HHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHH
T ss_pred HhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHH
Confidence 8875 35689999999999999999999995 68999999999999999999888888899999999999988 7788
Q ss_pred HHHHHHHHHH
Q 036794 622 AEMTLEQLSL 631 (1152)
Q Consensus 622 Ain~LEkLsL 631 (1152)
+.++++.+++
T Consensus 257 l~~l~~~A~~ 266 (355)
T 2qp9_X 257 IAVVVKDALM 266 (355)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 34
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.75 E-value=5.8e-17 Score=181.79 Aligned_cols=196 Identities=15% Similarity=0.158 Sum_probs=147.7
Q ss_pred hhCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHc-ccCCCCCCCCCCC
Q 036794 414 KYMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALN-CQSLEQPKPCGFC 481 (1152)
Q Consensus 414 KyRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~-~~~~e~~epcg~c 481 (1152)
++.+.+|+||+|++.+++.|.+++.. ...++++|||||||||||++|+++|+++. .....
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~-------- 76 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS-------- 76 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEE--------
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEE--------
Confidence 45567899999999999999988752 23446899999999999999999999973 22100
Q ss_pred CccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhh
Q 036794 482 NSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKVVDR 550 (1152)
Q Consensus 482 ~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLklLEe 550 (1152)
..|..+. ..........++.++..+.. ..+.||||||+|.+.. ...+.|+..++.
T Consensus 77 i~~~~l~----------~~~~g~~~~~~~~lf~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~ 142 (322)
T 1xwi_A 77 ISSSDLV----------SKWLGESEKLVKNLFQLARE----NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG 142 (322)
T ss_dssp EECCSSC----------CSSCCSCHHHHHHHHHHHHH----TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHC
T ss_pred EEhHHHH----------hhhhhHHHHHHHHHHHHHHh----cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhc
Confidence 0111110 00011234556777766543 3458999999998822 345678888876
Q ss_pred ---CCCCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHH
Q 036794 551 ---APRRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAEMT 625 (1152)
Q Consensus 551 ---pp~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ain~ 625 (1152)
...+++||++||.++.+++++++||. .+.|+.|+.+++..+++.++...+..+++..++.|+..+.| +.+++.++
T Consensus 143 ~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 143 VGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp SSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHH
T ss_pred ccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 35789999999999999999999995 68999999999999999999888888899999999999888 57777777
Q ss_pred HHHHHH
Q 036794 626 LEQLSL 631 (1152)
Q Consensus 626 LEkLsL 631 (1152)
+..+++
T Consensus 223 ~~~A~~ 228 (322)
T 1xwi_A 223 VRDALM 228 (322)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 776653
No 35
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.74 E-value=2e-17 Score=184.15 Aligned_cols=235 Identities=15% Similarity=0.168 Sum_probs=154.4
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccC----CCC----CCCCCCCCccccc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS----LEQ----PKPCGFCNSCISH 487 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~----~e~----~epcg~c~~c~~i 487 (1152)
+|.+|++++|++.++..+..++...... .+||+||||||||++|+++++.+.... ... ..+|..|..|..+
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~~~-~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPGIG-GVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLST 97 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGGGC-CEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCC
T ss_pred CCCCchhccChHHHHHHHHHHhhCCCCc-eEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhcc
Confidence 5668999999999888776665543333 389999999999999999999886311 011 1233444444422
Q ss_pred cCCCc-cceEEeCCCCCCCHHHH------HHHHHHHhhC--C---CCCCceEEEEeCCCCCCHHHHHHHHHHHhhC----
Q 036794 488 DRGKS-RNIKEVGPVGNFDFESI------LDLLDNMVTS--R---PPSQYRIFVFDDCDTLSPDSWSAISKVVDRA---- 551 (1152)
Q Consensus 488 ~~g~~-~dviEIdaas~~~vdeI------reLle~a~~~--P---~~a~~kVVIIDEID~Ls~eaqnaLLklLEep---- 551 (1152)
..... ..++.+.. ......+ ...+...... + ..+.++||||||++.++...++.|+++|++.
T Consensus 98 ~~~~~~~~~~~~~~--~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~ 175 (350)
T 1g8p_A 98 NVIRKPTPVVDLPL--GVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVV 175 (350)
T ss_dssp CEEEECCCEEEECT--TCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEE
T ss_pred ccccCCCcccccCC--CcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCceEE
Confidence 21110 11222211 1111111 1122211000 0 0123689999999999999999999999973
Q ss_pred ---------CCCEEEEEEcCCCC-cchHHHHccceE-EEecCCChh-HHHHHHHHH------------------------
Q 036794 552 ---------PRRVVFILVSSSLD-ALPHIIISRCQK-FFFPKMKDA-DIIYTLQWI------------------------ 595 (1152)
Q Consensus 552 ---------p~~VifILaTN~~d-kL~~aL~SR~qv-I~F~~p~~~-EI~eiL~~i------------------------ 595 (1152)
+.+++||+++|..+ .+.++|++||.. +.|++|+.. +..+++..+
T Consensus 176 ~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (350)
T 1g8p_A 176 ERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQ 255 (350)
T ss_dssp CCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred EecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHH
Confidence 24788888888644 789999999986 999999544 333454331
Q ss_pred -----HHHcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHHHHh----C-CCCCHHHHHHHHhccchhhH
Q 036794 596 -----ASKEGIEIDKDALKLIASRSDG----SLRDAEMTLEQLSLL----G-QRISVPLVQELVGLISDEKL 653 (1152)
Q Consensus 596 -----akkeGl~Id~dALelLAe~s~G----DLR~Ain~LEkLsLl----g-~~IT~EdV~elVg~v~ee~i 653 (1152)
....++.++++++++|+.++.+ ++|.+.++|+.+..+ + ..|+.++|.+++..+....+
T Consensus 256 i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 256 ILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRL 327 (350)
T ss_dssp HHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhcc
Confidence 2234678999999999999655 789999999876433 2 35999999998876554443
No 36
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.74 E-value=8.6e-17 Score=171.88 Aligned_cols=208 Identities=15% Similarity=0.148 Sum_probs=143.6
Q ss_pred CCcCcccCcHHHHHHHHHHHHhC-----------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMRR-----------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~g-----------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.+|++|+|++.+++.|.+.+..- ..+..+||+||||||||++|+++|+++++..... .|..
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~--------~~~~ 74 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAM--------AGAE 74 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE--------ETTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEe--------chHH
Confidence 47999999999999888766431 3456799999999999999999999986542111 1111
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC------------HHH---HHHHHHHHhh-
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS------------PDS---WSAISKVVDR- 550 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls------------~ea---qnaLLklLEe- 550 (1152)
+. +.........+..++..+... .+.||||||+|.+. ... .+.|+..++.
T Consensus 75 ~~----------~~~~~~~~~~~~~~~~~a~~~----~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 140 (262)
T 2qz4_A 75 FV----------EVIGGLGAARVRSLFKEARAR----APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM 140 (262)
T ss_dssp TS----------SSSTTHHHHHHHHHHHHHHHT----CSEEEEEECC-------------------CHHHHHHHHHHHTC
T ss_pred HH----------hhccChhHHHHHHHHHHHHhc----CCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc
Confidence 10 001112234566666665432 35899999999983 222 3344444544
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHH
Q 036794 551 -APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASRSDG-SLRDAEM 624 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~s~G-DLR~Ain 624 (1152)
.+.+++||++||.++.+++++.+ |+. .+.|+.|+.+++.++++.++...++..+.+. +..|+..+.| ..+++.+
T Consensus 141 ~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 141 GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHH
Confidence 34689999999999999999998 885 6899999999999999999999888887764 5788888877 4568888
Q ss_pred HHHHHHHhC-----CCCCHHHHHHHHhc
Q 036794 625 TLEQLSLLG-----QRISVPLVQELVGL 647 (1152)
Q Consensus 625 ~LEkLsLlg-----~~IT~EdV~elVg~ 647 (1152)
+++.++..+ ..|+.+++.+++..
T Consensus 221 l~~~a~~~a~~~~~~~i~~~d~~~a~~~ 248 (262)
T 2qz4_A 221 ICNEAALHAAREGHTSVHTLNFEYAVER 248 (262)
T ss_dssp HHHHHHTC--------CCBCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 888876542 23666666655543
No 37
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.6e-17 Score=189.68 Aligned_cols=208 Identities=17% Similarity=0.173 Sum_probs=150.7
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
...+|+||.|.+.+++.|.+.+.. -..+.+||||||||||||++|+++|.++++.+....
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~-------- 248 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIV-------- 248 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEE--------
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEE--------
Confidence 345899999999999999987743 245679999999999999999999999887632110
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHh
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKVVD 549 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLklLE 549 (1152)
+.. +. ...-..+...++.++..+... .+.||||||+|.+.. ...+.||..++
T Consensus 249 ~s~--------l~--sk~vGesek~ir~lF~~Ar~~----aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lD 314 (437)
T 4b4t_I 249 GSE--------LI--QKYLGDGPRLCRQIFKVAGEN----APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD 314 (437)
T ss_dssp SGG--------GC--CSSSSHHHHHHHHHHHHHHHT----CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHH
T ss_pred HHH--------hh--hccCchHHHHHHHHHHHHHhc----CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhh
Confidence 000 00 001112234577888877543 347999999998732 13445666666
Q ss_pred h--CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHH
Q 036794 550 R--APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-SLRDA 622 (1152)
Q Consensus 550 e--pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-DLR~A 622 (1152)
. ...+++||+|||.++.|+++|++ |+. .|.|+.|+.+++.++|+.++.... ++++ .++.||..+.| +..++
T Consensus 315 g~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~--l~~dvdl~~LA~~T~GfSGADI 392 (437)
T 4b4t_I 315 GFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN--LSEDVNLETLVTTKDDLSGADI 392 (437)
T ss_dssp HCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC--BCSCCCHHHHHHHCCSCCHHHH
T ss_pred CcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC--CCCcCCHHHHHHhCCCCCHHHH
Confidence 4 44689999999999999999998 777 489999999999999988876544 3333 37888888776 67777
Q ss_pred HHHHHHHHHh---C--CCCCHHHHHHHHhc
Q 036794 623 EMTLEQLSLL---G--QRISVPLVQELVGL 647 (1152)
Q Consensus 623 in~LEkLsLl---g--~~IT~EdV~elVg~ 647 (1152)
.+++..+++. . ..|+.+|+.+++..
T Consensus 393 ~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 393 QAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 7777776544 2 24888888777643
No 38
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.74 E-value=2.3e-17 Score=179.24 Aligned_cols=211 Identities=17% Similarity=0.164 Sum_probs=149.2
Q ss_pred hCCCCcCcccCcHHHHHHHHHHHHhC------------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCC
Q 036794 415 YMPRTFRDLVGQNLVAQALSNAVMRR------------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCN 482 (1152)
Q Consensus 415 yRP~sFddLVGQe~v~q~Lk~aL~~g------------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~ 482 (1152)
+.+.+|++|+|++.+++.|...+... ..+..+||+||||||||++|+++|+.++......
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v-------- 82 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRV-------- 82 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE--------
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE--------
Confidence 33457999999999999998887542 5667899999999999999999999976542111
Q ss_pred ccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCC-----------CHHHHHHHHHHHhh-
Q 036794 483 SCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTL-----------SPDSWSAISKVVDR- 550 (1152)
Q Consensus 483 ~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~L-----------s~eaqnaLLklLEe- 550 (1152)
.|..+.. .........+..++..+.. ..+.||||||+|.+ ....+..|+.+++.
T Consensus 83 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 148 (285)
T 3h4m_A 83 VGSELVK----------KFIGEGASLVKDIFKLAKE----KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEM 148 (285)
T ss_dssp EGGGGCC----------CSTTHHHHHHHHHHHHHHH----TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHH
T ss_pred ehHHHHH----------hccchHHHHHHHHHHHHHH----cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHh
Confidence 1111100 0001112345555655543 23479999999987 33455666666553
Q ss_pred ----CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHH
Q 036794 551 ----APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDA 622 (1152)
Q Consensus 551 ----pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~A 622 (1152)
...+++||++||.++.+++++.+ |+. .+.|++|+.+++.++++..+...++. .+..+..|+..+.| +.+++
T Consensus 149 ~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i 227 (285)
T 3h4m_A 149 DGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAEL 227 (285)
T ss_dssp HTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHH
T ss_pred hCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHH
Confidence 44689999999999999999998 886 69999999999999999888766543 22346777877766 66677
Q ss_pred HHHHHHHHHh-----CCCCCHHHHHHHHhcc
Q 036794 623 EMTLEQLSLL-----GQRISVPLVQELVGLI 648 (1152)
Q Consensus 623 in~LEkLsLl-----g~~IT~EdV~elVg~v 648 (1152)
.+++..+... ...|+.+++.+++...
T Consensus 228 ~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 228 KAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 7766665433 2359999999887654
No 39
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.9e-17 Score=190.47 Aligned_cols=209 Identities=19% Similarity=0.191 Sum_probs=151.1
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
.+.+|+||.|.+.+++.|.+.+.. -..+.+||||||||||||++|+++|.++++.+....
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~-------- 247 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA-------- 247 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE--------
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe--------
Confidence 445899999999999999877532 245679999999999999999999999987632110
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------H---HHHHHHHHHh
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------D---SWSAISKVVD 549 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------e---aqnaLLklLE 549 (1152)
+..+ . ......+...++.++..+... .+.||||||+|.+.. . ..+.||..|+
T Consensus 248 ~s~l--------~--~~~vGese~~ir~lF~~A~~~----aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ld 313 (434)
T 4b4t_M 248 APQL--------V--QMYIGEGAKLVRDAFALAKEK----APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLD 313 (434)
T ss_dssp GGGG--------C--SSCSSHHHHHHHHHHHHHHHH----CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHT
T ss_pred hhhh--------h--hcccchHHHHHHHHHHHHHhc----CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhh
Confidence 0000 0 001112234577788776543 247999999997621 1 2456777777
Q ss_pred hC--CCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHH
Q 036794 550 RA--PRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-SLRDA 622 (1152)
Q Consensus 550 ep--p~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-DLR~A 622 (1152)
.. ..+++||++||.++.|+++|++ |+. .|.|+.|+.+++.++++.+++...+ +++ .++.||..+.| +.+++
T Consensus 314 g~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~--~~dvdl~~lA~~t~G~sGADi 391 (434)
T 4b4t_M 314 GFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT--DDDINWQELARSTDEFNGAQL 391 (434)
T ss_dssp TSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB--CSCCCHHHHHHHCSSCCHHHH
T ss_pred ccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC--CCcCCHHHHHHhCCCCCHHHH
Confidence 53 3578999999999999999988 777 5999999999999999988877543 222 27788888877 77777
Q ss_pred HHHHHHHHHh-----CCCCCHHHHHHHHhcc
Q 036794 623 EMTLEQLSLL-----GQRISVPLVQELVGLI 648 (1152)
Q Consensus 623 in~LEkLsLl-----g~~IT~EdV~elVg~v 648 (1152)
.+++..+++. ...|+.+|+.+++..+
T Consensus 392 ~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 392 KAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 7777776544 2358999888877654
No 40
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.73 E-value=2.5e-16 Score=175.79 Aligned_cols=234 Identities=16% Similarity=0.187 Sum_probs=159.0
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHh---CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMR---RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~---gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
..+|..+|.| ++++|++..++.|..++.. +..+..++|+||+|||||++++.+++.+...... ..++. ...|
T Consensus 10 ~~~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-~~~~~-~i~~ 84 (386)
T 2qby_A 10 REYLLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-KFKHV-YINT 84 (386)
T ss_dssp GGGGSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-SCEEE-EEEH
T ss_pred hhhCCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-CceEE-EEEC
Confidence 3456667775 7889999999999988875 4556679999999999999999999988543110 00000 0111
Q ss_pred ccccC------CCccceEEeCCCCCCCHHHHHHH-HHHHhhCCCCCCceEEEEeCCCCCC----HHHHHHHHHHHhh-CC
Q 036794 485 ISHDR------GKSRNIKEVGPVGNFDFESILDL-LDNMVTSRPPSQYRIFVFDDCDTLS----PDSWSAISKVVDR-AP 552 (1152)
Q Consensus 485 ~~i~~------g~~~dviEIdaas~~~vdeIreL-le~a~~~P~~a~~kVVIIDEID~Ls----~eaqnaLLklLEe-pp 552 (1152)
..... .-...+....+........+.+. .+.+.. .+.+.||||||++.+. .+.+..|++.++. ..
T Consensus 85 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~ 161 (386)
T 2qby_A 85 RQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRD---YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNK 161 (386)
T ss_dssp HHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT---CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc---cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCC
Confidence 10000 00000000000111223443333 333322 2346899999999885 4566777777765 35
Q ss_pred CCEEEEEEcCCCC---cchHHHHccc--eEEEecCCChhHHHHHHHHHHHHc--CCCCCHHHHHHHHHhcC---CCHHHH
Q 036794 553 RRVVFILVSSSLD---ALPHIIISRC--QKFFFPKMKDADIIYTLQWIASKE--GIEIDKDALKLIASRSD---GSLRDA 622 (1152)
Q Consensus 553 ~~VifILaTN~~d---kL~~aL~SR~--qvI~F~~p~~~EI~eiL~~iakke--Gl~Id~dALelLAe~s~---GDLR~A 622 (1152)
.++.||++|+.++ .+.+.+.+|+ ..+.|++++.+++.+++...+... ...++++++++++.++. ||+|.+
T Consensus 162 ~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~ 241 (386)
T 2qby_A 162 SKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRA 241 (386)
T ss_dssp --EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHH
T ss_pred CeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 6889999998773 5777899998 689999999999999999887653 36789999999999988 999999
Q ss_pred HHHHHHHHHh----C-CCCCHHHHHHHHhccc
Q 036794 623 EMTLEQLSLL----G-QRISVPLVQELVGLIS 649 (1152)
Q Consensus 623 in~LEkLsLl----g-~~IT~EdV~elVg~v~ 649 (1152)
+++++.++.. + ..|+.++|.+++....
T Consensus 242 ~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 242 LDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 9999987654 2 3699999998876653
No 41
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=7e-17 Score=188.51 Aligned_cols=207 Identities=16% Similarity=0.155 Sum_probs=149.6
Q ss_pred CCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|+||.|.+.+++.|.+++.. -..+.+||||||||||||++|+++|.++++.+... .+.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v--------~~s 249 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS--------PAS 249 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE--------EGG
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE--------ehh
Confidence 4799999999999999887753 34567999999999999999999999998763211 000
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhhC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKVVDRA 551 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLklLEep 551 (1152)
.+ ++.....+...++.++..+... .+.||||||+|.+.. ...+.||..|+..
T Consensus 250 ~l----------~sk~~Gese~~ir~~F~~A~~~----~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 250 GI----------VDKYIGESARIIREMFAYAKEH----EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp GT----------CCSSSSHHHHHHHHHHHHHHHS----CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred hh----------ccccchHHHHHHHHHHHHHHhc----CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 00 0011112234577777776543 348999999998732 1345677777753
Q ss_pred --CCCEEEEEEcCCCCcchHHHHcc--ce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHH
Q 036794 552 --PRRVVFILVSSSLDALPHIIISR--CQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAEMT 625 (1152)
Q Consensus 552 --p~~VifILaTN~~dkL~~aL~SR--~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ain~ 625 (1152)
..+++||++||.++.|+++|+++ +. .|.|+.|+..++.++++.++....+. ++-.++.|+..+.| +..++.++
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l 394 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNC 394 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHH
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHH
Confidence 35799999999999999999886 55 59999999999999999888765432 11237788888877 77777777
Q ss_pred HHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 626 LEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 626 LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
+..+++. ...|+.+|+.+++..
T Consensus 395 ~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 395 ATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 7766544 235888888777654
No 42
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.73 E-value=5.3e-17 Score=189.82 Aligned_cols=200 Identities=16% Similarity=0.170 Sum_probs=148.4
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHc-ccCCCCCCC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALN-CQSLEQPKP 477 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~-~~~~e~~ep 477 (1152)
.+..++.+.+|++|+|++.+++.|..++.. ...++++||+||||||||++|++||+++. .....
T Consensus 123 ~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~---- 198 (444)
T 2zan_A 123 AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS---- 198 (444)
T ss_dssp -CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEE----
T ss_pred ceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEE----
Confidence 344567788999999999999999988732 23457899999999999999999999973 22100
Q ss_pred CCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HHHHHHHHH
Q 036794 478 CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PDSWSAISK 546 (1152)
Q Consensus 478 cg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~eaqnaLLk 546 (1152)
..|..+.. . .++ .....++.++..+.. ..+.||||||+|.+. ...++.|+.
T Consensus 199 ----v~~~~l~~-----~-~~g----~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~ 260 (444)
T 2zan_A 199 ----ISSSDLVS-----K-WLG----ESEKLVKNLFQLARE----NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLV 260 (444)
T ss_dssp ----ECCC-------------------CCCTHHHHHHHHHH----SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHT
T ss_pred ----EeHHHHHh-----h-hcc----hHHHHHHHHHHHHHH----cCCeEEEEechHhhccCCCCccccHHHHHHHHHHH
Confidence 01111100 0 000 011234556655543 345899999999983 235677888
Q ss_pred HHhh---CCCCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHH
Q 036794 547 VVDR---APRRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRD 621 (1152)
Q Consensus 547 lLEe---pp~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~ 621 (1152)
.|+. .+.+++||++||.++.++++|++||. .+.|+.|+.+++..++..++...+..+++..+..|+..+.| +.++
T Consensus 261 ~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgad 340 (444)
T 2zan_A 261 QMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGAD 340 (444)
T ss_dssp TTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHH
T ss_pred HHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHH
Confidence 8876 45789999999999999999999996 68899999999999999999888878899999999999988 7778
Q ss_pred HHHHHHHHHH
Q 036794 622 AEMTLEQLSL 631 (1152)
Q Consensus 622 Ain~LEkLsL 631 (1152)
+.+++..+++
T Consensus 341 l~~l~~~a~~ 350 (444)
T 2zan_A 341 ISIIVRDALM 350 (444)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 7777776653
No 43
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1e-16 Score=187.37 Aligned_cols=206 Identities=15% Similarity=0.165 Sum_probs=148.8
Q ss_pred CCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|+||.|.+.+++.|++++.. -..+.+||||||||||||++|+++|+++++.+... .+.
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v--------s~s 277 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRV--------IGS 277 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE--------EGG
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE--------EhH
Confidence 4799999999999999887642 25677999999999999999999999998763211 000
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------H---HHHHHHHHHhh-
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------D---SWSAISKVVDR- 550 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------e---aqnaLLklLEe- 550 (1152)
.+ . ......+...++.++..+... .+.||||||+|.+.. . ..+.||..|+.
T Consensus 278 ~L--------~--sk~vGesek~ir~lF~~Ar~~----aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 278 EL--------V--QKYVGEGARMVRELFEMARTK----KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp GG--------C--CCSSSHHHHHHHHHHHHHHHT----CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred Hh--------h--cccCCHHHHHHHHHHHHHHhc----CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 10 0 001112235678888877544 347999999998832 1 23455666654
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHH
Q 036794 551 -APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-SLRDAEM 624 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-DLR~Ain 624 (1152)
...+++||++||.++.|+++|++ |+. .|.|+.|+.+++.++|+.+++...+ +.+ .++.|+..+.| +..++.+
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l--~~dvdl~~LA~~T~GfSGADI~~ 421 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV--ERGIRWELISRLCPNSTGAELRS 421 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB--CSSCCHHHHHHHCCSCCHHHHHH
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC--CCCCCHHHHHHHCCCCCHHHHHH
Confidence 34689999999999999999998 887 5999999999999999888765443 322 36778888877 6777777
Q ss_pred HHHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 625 TLEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 625 ~LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
++..+++. ...|+.+|+.+++..
T Consensus 422 l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 422 VCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 77766544 235788887766543
No 44
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.73 E-value=8.5e-18 Score=184.40 Aligned_cols=202 Identities=19% Similarity=0.268 Sum_probs=141.7
Q ss_pred cCcccCcHHHHHHHHHHHHhCC--------CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCC
Q 036794 420 FRDLVGQNLVAQALSNAVMRRK--------VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK 491 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gr--------i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~ 491 (1152)
..+++|++.+++.|..++..+. ....+||+||+|||||++|++||+.+.+..... . ...|..+....
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~----~-~~~~~~~~~~~ 90 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAM----I-RIDMTEYMEKH 90 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE----E-EEEGGGCCSTT
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcce----E-Eeecccccccc
Confidence 3678999999999998887752 235799999999999999999999986542111 0 01111111100
Q ss_pred c-cceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-----------CCEEEEE
Q 036794 492 S-RNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-----------RRVVFIL 559 (1152)
Q Consensus 492 ~-~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-----------~~VifIL 559 (1152)
. ..++. ...+..+......+...+.. ..+.||||||++.++...++.|+++|++.. .+++||+
T Consensus 91 ~~~~l~g-~~~~~~~~~~~~~~~~~~~~----~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ 165 (311)
T 4fcw_A 91 AVSRLIG-APPGYVGYEEGGQLTEAVRR----RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIM 165 (311)
T ss_dssp HHHHHHC-CCTTSTTTTTCCHHHHHHHH----CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEE
T ss_pred cHHHhcC-CCCccccccccchHHHHHHh----CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEE
Confidence 0 00000 00111121111122222222 235899999999999999999999999843 4788999
Q ss_pred EcCC--------------------------CCcchHHHHccc-eEEEecCCChhHHHHHHHHHHHHc---------CCCC
Q 036794 560 VSSS--------------------------LDALPHIIISRC-QKFFFPKMKDADIIYTLQWIASKE---------GIEI 603 (1152)
Q Consensus 560 aTN~--------------------------~dkL~~aL~SR~-qvI~F~~p~~~EI~eiL~~iakke---------Gl~I 603 (1152)
+||. ...+.++|++|| ..+.|.+++.+++..++..++.+. .+.+
T Consensus 166 ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 245 (311)
T 4fcw_A 166 TSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLEL 245 (311)
T ss_dssp EESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEE
T ss_pred ecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEe
Confidence 9997 335778899999 579999999999999888766542 4568
Q ss_pred CHHHHHHHHHh-c--CCCHHHHHHHHHHHHH
Q 036794 604 DKDALKLIASR-S--DGSLRDAEMTLEQLSL 631 (1152)
Q Consensus 604 d~dALelLAe~-s--~GDLR~Ain~LEkLsL 631 (1152)
++++++.|+.+ | +||+|++.+.++++..
T Consensus 246 ~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 246 TEAAKDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp CHHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred CHHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 99999999997 6 6999999999998753
No 45
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.4e-16 Score=185.54 Aligned_cols=206 Identities=19% Similarity=0.201 Sum_probs=149.8
Q ss_pred CCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|+||.|.+.+++.|.+.+.. -..+.+||||||||||||++|+++|+++++.+... .+.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v--------~~~ 240 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV--------NGS 240 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE--------EGG
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE--------ecc
Confidence 4799999999999999887743 34567899999999999999999999998663211 000
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC--------------HHHHHHHHHHHhh-
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS--------------PDSWSAISKVVDR- 550 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls--------------~eaqnaLLklLEe- 550 (1152)
.+ ++.........++++|..+... .+.||||||+|.+. ....+.||..|+.
T Consensus 241 ~l----------~~~~~Ge~e~~ir~lF~~A~~~----aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 241 EF----------VHKYLGEGPRMVRDVFRLAREN----APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp GT----------CCSSCSHHHHHHHHHHHHHHHT----CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred hh----------hccccchhHHHHHHHHHHHHHc----CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence 00 0011112245688888877543 34899999998652 1245678888876
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHc--cce-EEEec-CCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHH
Q 036794 551 -APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFP-KMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-SLRDAE 623 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~-~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-DLR~Ai 623 (1152)
...+++||++||.++.++++|++ |+. .|.|+ .|+..+...+++.++....+ +++ .++.||..+.| +.+++.
T Consensus 307 ~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l--~~~~dl~~lA~~t~G~sgadi~ 384 (428)
T 4b4t_K 307 DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL--APEADLDSLIIRNDSLSGAVIA 384 (428)
T ss_dssp CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB--CTTCCHHHHHHHTTTCCHHHHH
T ss_pred CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC--CcccCHHHHHHHCCCCCHHHHH
Confidence 44689999999999999999998 776 48896 67888899999888876543 333 37888888777 777777
Q ss_pred HHHHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 624 MTLEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 624 n~LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
+++..+++. ...|+.+|+.+++..
T Consensus 385 ~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 385 AIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 777776544 235888888877643
No 46
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.70 E-value=1.6e-16 Score=176.97 Aligned_cols=220 Identities=11% Similarity=0.111 Sum_probs=154.8
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
..+|.++|+|..|.+++|++.++..+..++..+. .+||+||||||||++|+++++.+++..... .|...
T Consensus 14 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~---~vll~G~pGtGKT~la~~la~~~~~~~~~i--------~~~~~ 82 (331)
T 2r44_A 14 YRNKIKEVIDEVGKVVVGQKYMINRLLIGICTGG---HILLEGVPGLAKTLSVNTLAKTMDLDFHRI--------QFTPD 82 (331)
T ss_dssp HHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTC---CEEEESCCCHHHHHHHHHHHHHTTCCEEEE--------ECCTT
T ss_pred HHHHHHHHHHHhccceeCcHHHHHHHHHHHHcCC---eEEEECCCCCcHHHHHHHHHHHhCCCeEEE--------ecCCC
Confidence 4578999999999999999999999998887753 589999999999999999999986542111 11000
Q ss_pred cC-CCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCE
Q 036794 488 DR-GKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRV 555 (1152)
Q Consensus 488 ~~-g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~V 555 (1152)
.. ........++.... .+ .....+. ...||||||++.++...++.|+..+++. +..+
T Consensus 83 ~~~~~l~g~~~~~~~~~-~~--------~~~~g~l--~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~ 151 (331)
T 2r44_A 83 LLPSDLIGTMIYNQHKG-NF--------EVKKGPV--FSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPF 151 (331)
T ss_dssp CCHHHHHEEEEEETTTT-EE--------EEEECTT--CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSC
T ss_pred CChhhcCCceeecCCCC-ce--------EeccCcc--cccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCE
Confidence 00 00000000000000 00 0000011 1369999999999999999999999973 4566
Q ss_pred EEEEEcCCCC-----cchHHHHccceE-EEecCCChhHHHHHHHHHHHH----------------------cCCCCCHHH
Q 036794 556 VFILVSSSLD-----ALPHIIISRCQK-FFFPKMKDADIIYTLQWIASK----------------------EGIEIDKDA 607 (1152)
Q Consensus 556 ifILaTN~~d-----kL~~aL~SR~qv-I~F~~p~~~EI~eiL~~iakk----------------------eGl~Id~dA 607 (1152)
++|+++|..+ .++++|++||.. +.|.+|+.+++.++|+..+.. .++.+++++
T Consensus 152 ~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 231 (331)
T 2r44_A 152 LVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESL 231 (331)
T ss_dssp EEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHH
T ss_pred EEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHH
Confidence 7776666332 388999999984 999999999999999887654 277899999
Q ss_pred HHHHHHhc-----CC---------------CHHHHHHHHHHHH---Hh-CC-CCCHHHHHHHHhccc
Q 036794 608 LKLIASRS-----DG---------------SLRDAEMTLEQLS---LL-GQ-RISVPLVQELVGLIS 649 (1152)
Q Consensus 608 LelLAe~s-----~G---------------DLR~Ain~LEkLs---Ll-g~-~IT~EdV~elVg~v~ 649 (1152)
+++++... .+ +.|.+++.+..+. .+ +. .|+.++|.+++..+.
T Consensus 232 ~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl 298 (331)
T 2r44_A 232 EKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDIL 298 (331)
T ss_dssp HHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 99998763 22 7999998887653 33 22 489999998876543
No 47
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.70 E-value=1.5e-16 Score=185.78 Aligned_cols=210 Identities=14% Similarity=0.160 Sum_probs=150.0
Q ss_pred CcCccc-C--cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccce
Q 036794 419 TFRDLV-G--QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNI 495 (1152)
Q Consensus 419 sFddLV-G--Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dv 495 (1152)
+|++++ | +..+...+...+......+.++||||+|+|||++|+++++.+....... .+
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~-------------------~v 163 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDL-------------------RV 163 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSS-------------------CE
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCC-------------------eE
Confidence 799988 5 4455566666665533256799999999999999999999986442111 02
Q ss_pred EEeCCCCCCCHHHHHHHHHHH---hhCCCCC-CceEEEEeCCCCCCH--HHHHHHHHHHhhC-CCCEEEEEEcCCC-C--
Q 036794 496 KEVGPVGNFDFESILDLLDNM---VTSRPPS-QYRIFVFDDCDTLSP--DSWSAISKVVDRA-PRRVVFILVSSSL-D-- 565 (1152)
Q Consensus 496 iEIdaas~~~vdeIreLle~a---~~~P~~a-~~kVVIIDEID~Ls~--eaqnaLLklLEep-p~~VifILaTN~~-d-- 565 (1152)
..++... + ..++...+... ....... ...||||||++.+.. ..++.|+.+++.. .....+|++|+.+ .
T Consensus 164 ~~v~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l 241 (440)
T 2z4s_A 164 MYITSEK-F-LNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKL 241 (440)
T ss_dssp EEEEHHH-H-HHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGC
T ss_pred EEeeHHH-H-HHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHH
Confidence 2222110 0 11111111100 0000002 457999999999986 6788888888762 3345666677653 3
Q ss_pred -cchHHHHccc---eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh----CCCCC
Q 036794 566 -ALPHIIISRC---QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL----GQRIS 637 (1152)
Q Consensus 566 -kL~~aL~SR~---qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl----g~~IT 637 (1152)
.+.+.|.+|| ..+.|++|+.+++..+|...+...++.++++++++|+..++||+|++.+.|+++..+ +..||
T Consensus 242 ~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It 321 (440)
T 2z4s_A 242 SEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVD 321 (440)
T ss_dssp SSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3788999999 589999999999999999999999999999999999999999999999999998654 44699
Q ss_pred HHHHHHHHhccc
Q 036794 638 VPLVQELVGLIS 649 (1152)
Q Consensus 638 ~EdV~elVg~v~ 649 (1152)
.+++.+++....
T Consensus 322 ~~~~~~~l~~~~ 333 (440)
T 2z4s_A 322 LKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHTSTTT
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 48
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.70 E-value=1e-16 Score=173.10 Aligned_cols=211 Identities=10% Similarity=0.096 Sum_probs=132.4
Q ss_pred CcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cceE
Q 036794 419 TFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNIK 496 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dvi 496 (1152)
+|++++|++..+..+.+.+.. ......+||+||+|||||++|+++++.+.... .|+. ...|..+..... ..++
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~----~~~~-~v~~~~~~~~~~~~~l~ 78 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ----GPFI-SLNCAALNENLLDSELF 78 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTT----SCEE-EEEGGGSCHHHHHHHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccC----CCeE-EEecCCCChhHHHHHhc
Confidence 699999999988888776654 44456699999999999999999998765321 1111 112221100000 0000
Q ss_pred EeCCCCCCCH-HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCCC
Q 036794 497 EVGPVGNFDF-ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSSL 564 (1152)
Q Consensus 497 EIdaas~~~v-deIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~~ 564 (1152)
........+. .....+++. +.+++|||||++.++.+.++.|+++|++. +.++.||++||..
T Consensus 79 g~~~~~~~g~~~~~~~~l~~-------a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~ 151 (265)
T 2bjv_A 79 GHEAGAFTGAQKRHPGRFER-------ADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (265)
T ss_dssp CCC---------CCCCHHHH-------TTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSC
T ss_pred CCcccccccccccccchhhh-------cCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcC
Confidence 0000000000 000001111 23579999999999999999999999973 3578899999864
Q ss_pred -C------cchHHHHccce--EEEecCCCh--hHHHHHH----HHHHHHcCC----CCCHHHHHHHHHh-cCCCHHHHHH
Q 036794 565 -D------ALPHIIISRCQ--KFFFPKMKD--ADIIYTL----QWIASKEGI----EIDKDALKLIASR-SDGSLRDAEM 624 (1152)
Q Consensus 565 -d------kL~~aL~SR~q--vI~F~~p~~--~EI~eiL----~~iakkeGl----~Id~dALelLAe~-s~GDLR~Ain 624 (1152)
. .+.+.|.+|+. .+.++++.. +++..++ ...+...+. .+++++++.|..+ |+||+|++.+
T Consensus 152 ~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~ 231 (265)
T 2bjv_A 152 LPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKN 231 (265)
T ss_dssp HHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHH
T ss_pred HHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHH
Confidence 1 36688999985 477777765 4555443 444445555 6899999999877 7999999999
Q ss_pred HHHHHHHh--CCCCCHHHH
Q 036794 625 TLEQLSLL--GQRISVPLV 641 (1152)
Q Consensus 625 ~LEkLsLl--g~~IT~EdV 641 (1152)
.|+.++.. +..|+.+++
T Consensus 232 ~l~~~~~~~~~~~i~~~~l 250 (265)
T 2bjv_A 232 VVERSVYRHGTSDYPLDDI 250 (265)
T ss_dssp HHHHHHHHHCCSSSCBCCC
T ss_pred HHHHHHHhCCCCcCcHHHc
Confidence 99998765 345776554
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.69 E-value=4.3e-16 Score=173.23 Aligned_cols=183 Identities=14% Similarity=0.206 Sum_probs=134.0
Q ss_pred CcCccc-C--cHHHHHHHHHHHHhCC-CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccc
Q 036794 419 TFRDLV-G--QNLVAQALSNAVMRRK-VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRN 494 (1152)
Q Consensus 419 sFddLV-G--Qe~v~q~Lk~aL~~gr-i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~d 494 (1152)
+|++++ | +..+...+..++.... .++.+||+||+|||||++|+++++.+..... +
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~----~----------------- 67 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGY----R----------------- 67 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTC----C-----------------
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCC----E-----------------
Confidence 699987 5 5566777777776643 4456899999999999999999998854310 0
Q ss_pred eEEeCCCCCCCHHHHHH---------HHHHHhhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhC-CCCEEEEEEcC
Q 036794 495 IKEVGPVGNFDFESILD---------LLDNMVTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDRA-PRRVVFILVSS 562 (1152)
Q Consensus 495 viEIdaas~~~vdeIre---------Lle~a~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEep-p~~VifILaTN 562 (1152)
++.++... . ...+.. +.... ....+|||||++.+.. ..++.|+.+++.. .....+|++++
T Consensus 68 ~~~i~~~~-~-~~~~~~~~~~~~~~~~~~~~------~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 68 VIYSSADD-F-AQAMVEHLKKGTINEFRNMY------KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp EEEEEHHH-H-HHHHHHHHHHTCHHHHHHHH------HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred EEEEEHHH-H-HHHHHHHHHcCcHHHHHHHh------cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 22221100 0 011111 11111 2357999999999986 6777888887652 23344555555
Q ss_pred -CCC---cchHHHHccc---eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 036794 563 -SLD---ALPHIIISRC---QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL 632 (1152)
Q Consensus 563 -~~d---kL~~aL~SR~---qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl 632 (1152)
.+. .+.+.|.+|+ ..+.|++ +.+++..++...+...++.++++++++|+.++ ||+|.+.+.|+++..+
T Consensus 140 ~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 140 RHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLK 214 (324)
T ss_dssp SCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHHH
T ss_pred CChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHHc
Confidence 333 5788999999 6899999 99999999999999999999999999999999 9999999999998766
No 50
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.68 E-value=3.6e-16 Score=184.55 Aligned_cols=208 Identities=20% Similarity=0.242 Sum_probs=153.8
Q ss_pred CCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 417 PRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 417 P~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
..+|+||+|++.+++.|.+.+.. .+.+.++||+||||||||++|+++|.+++..+... +|.
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~i--------s~~ 83 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHI--------SGS 83 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEE--------EGG
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeC--------CHH
Confidence 34899999999999999887653 24567899999999999999999999886542111 111
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhh-
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKVVDR- 550 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLklLEe- 550 (1152)
.+... ....+...++.++..+... .+.||||||+|.+.. ..++.|+..|+.
T Consensus 84 ~~~~~----------~~g~~~~~~r~lf~~A~~~----~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~ 149 (476)
T 2ce7_A 84 DFVEL----------FVGVGAARVRDLFAQAKAH----APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF 149 (476)
T ss_dssp GTTTC----------CTTHHHHHHHHHHHHHHHT----CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS
T ss_pred HHHHH----------HhcccHHHHHHHHHHHHhc----CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc
Confidence 11100 0112345677788776542 348999999998843 246778887774
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCCCH-HHHHH
Q 036794 551 -APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASRSDGSL-RDAEM 624 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~s~GDL-R~Ain 624 (1152)
...+++||++||.++.+++++++ |+. .|.|+.|+.+++.++++.+++... +.+++ +..|+..++|+. +++.+
T Consensus 150 ~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~--l~~~v~l~~la~~t~G~sgadL~~ 227 (476)
T 2ce7_A 150 DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAKRTPGFVGADLEN 227 (476)
T ss_dssp CGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred CCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC--CcchhhHHHHHHhcCCCcHHHHHH
Confidence 34589999999999989988886 776 689999999999999988776544 33333 778999999977 89999
Q ss_pred HHHHHHHh-----CCCCCHHHHHHHHhcc
Q 036794 625 TLEQLSLL-----GQRISVPLVQELVGLI 648 (1152)
Q Consensus 625 ~LEkLsLl-----g~~IT~EdV~elVg~v 648 (1152)
+++.+++. ...|+.+++.+++..+
T Consensus 228 lv~~Aal~A~~~~~~~I~~~dl~~al~~v 256 (476)
T 2ce7_A 228 LVNEAALLAAREGRDKITMKDFEEAIDRV 256 (476)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeecHHHHHHHHHHH
Confidence 99987654 2359999988877654
No 51
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.68 E-value=3.2e-16 Score=174.58 Aligned_cols=211 Identities=15% Similarity=0.146 Sum_probs=139.1
Q ss_pred CcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cceEEe
Q 036794 421 RDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNIKEV 498 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dviEI 498 (1152)
++|+|++..++.+...+.. ......+||+||+|||||++|++|++....... |+. ..+|..+..... ..++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~----~~v-~v~~~~~~~~l~~~~lfg~ 76 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDR----PLV-TLNCAALNESLLESELFGH 76 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSS----CCC-EEECSSCCHHHHHHHHTCC
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCC----CeE-EEeCCCCChHHHHHHhcCc
Confidence 4689999999888877765 344556999999999999999999997643321 111 112222110000 000000
Q ss_pred CCCCCCCH-HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCCC--
Q 036794 499 GPVGNFDF-ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSSL-- 564 (1152)
Q Consensus 499 daas~~~v-deIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~~-- 564 (1152)
......+. ......++.+ .+++|||||++.|+...+..|+++|++. +.++.||++||..
T Consensus 77 ~~g~~tg~~~~~~g~~~~a-------~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~ 149 (304)
T 1ojl_A 77 EKGAFTGADKRREGRFVEA-------DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA 149 (304)
T ss_dssp CSSCCC---CCCCCHHHHH-------TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHH
T ss_pred cccccCchhhhhcCHHHhc-------CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHH
Confidence 00000000 0001122222 3479999999999999999999999974 3578999999865
Q ss_pred -----CcchHHHHccce--EEEecCCC--hhHHHHHHHHHHH----HcC---CCCCHHHHHHHHHh-cCCCHHHHHHHHH
Q 036794 565 -----DALPHIIISRCQ--KFFFPKMK--DADIIYTLQWIAS----KEG---IEIDKDALKLIASR-SDGSLRDAEMTLE 627 (1152)
Q Consensus 565 -----dkL~~aL~SR~q--vI~F~~p~--~~EI~eiL~~iak----keG---l~Id~dALelLAe~-s~GDLR~Ain~LE 627 (1152)
..+.+.|.+|+. .|.++++. .+++..++..++. ..+ ..+++++++.|..+ |+||+|++.|.++
T Consensus 150 ~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~ 229 (304)
T 1ojl_A 150 EEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIE 229 (304)
T ss_dssp HHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 135677999985 36677777 4566665554443 333 56999999999999 7999999999999
Q ss_pred HHHHhC--CCCCHHHHHH
Q 036794 628 QLSLLG--QRISVPLVQE 643 (1152)
Q Consensus 628 kLsLlg--~~IT~EdV~e 643 (1152)
+++... ..|+.+++..
T Consensus 230 ~~~~~~~~~~i~~~~l~~ 247 (304)
T 1ojl_A 230 RAVVLLTGEYISERELPL 247 (304)
T ss_dssp HHHHHCCSSSBCGGGSCG
T ss_pred HHHHhCCCCcccHHhhhh
Confidence 987763 4588777653
No 52
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.68 E-value=4.2e-16 Score=172.66 Aligned_cols=196 Identities=19% Similarity=0.224 Sum_probs=139.2
Q ss_pred hhCCCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCC
Q 036794 414 KYMPRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFC 481 (1152)
Q Consensus 414 KyRP~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c 481 (1152)
++.+.+|++|+|++.+++.|.+++.. -..+.++||+||||||||++|+++|+.+++.....
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v------- 80 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI------- 80 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEE-------
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEE-------
Confidence 45566899999999999999988864 25567899999999999999999999876442111
Q ss_pred CccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH--------------HHHHHHHH
Q 036794 482 NSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD--------------SWSAISKV 547 (1152)
Q Consensus 482 ~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e--------------aqnaLLkl 547 (1152)
.|..+... .++ .....++.+++.+... .+.||||||+|.+... .++.|+..
T Consensus 81 -~~~~l~~~------~~g----~~~~~~~~~f~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~ 145 (301)
T 3cf0_A 81 -KGPELLTM------WFG----ESEANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTE 145 (301)
T ss_dssp -CHHHHHHH------HHT----TCTTHHHHHHHHHHHT----CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHH
T ss_pred -EhHHHHhh------hcC----chHHHHHHHHHHHHhc----CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHH
Confidence 11111000 000 1123456677665432 3489999999987543 46789999
Q ss_pred Hhh--CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHH
Q 036794 548 VDR--APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRD 621 (1152)
Q Consensus 548 LEe--pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~ 621 (1152)
|+. ...+++||++||.++.+++++++ |+. .+.|+.|+.+++.++++.+++..++. .+..++.|+..+.| ..++
T Consensus 146 l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~d 224 (301)
T 3cf0_A 146 MDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGAD 224 (301)
T ss_dssp HHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHH
T ss_pred hhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHH
Confidence 885 34689999999999999999988 886 69999999999999999988876643 11224556666544 4557
Q ss_pred HHHHHHHHHHh
Q 036794 622 AEMTLEQLSLL 632 (1152)
Q Consensus 622 Ain~LEkLsLl 632 (1152)
+.++++.+++.
T Consensus 225 l~~l~~~a~~~ 235 (301)
T 3cf0_A 225 LTEICQRACKL 235 (301)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776543
No 53
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.65 E-value=5.3e-16 Score=182.56 Aligned_cols=199 Identities=16% Similarity=0.154 Sum_probs=143.7
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
...|.++|+|..|++|||++..++.+...+.....+ .+||+||||||||++|++||+.+.+...+.. ...
T Consensus 167 ~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~-~~LL~G~pG~GKT~la~~la~~l~~~~~p~~----l~~----- 236 (468)
T 3pxg_A 167 ARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKN-NPVLIGEPGVGKTAIAEGLAQQIINNEVPEI----LRD----- 236 (468)
T ss_dssp CCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSC-EEEEESCTTTTTHHHHHHHHHHHHSSCSCTT----TSS-----
T ss_pred HHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCC-CeEEECCCCCCHHHHHHHHHHHHHhCCCChh----hcC-----
Confidence 457899999999999999999999999999875554 5799999999999999999999876543211 000
Q ss_pred cCCCccceEEeCCCC-CC--CHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 488 DRGKSRNIKEVGPVG-NF--DFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 488 ~~g~~~dviEIdaas-~~--~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
..++.++... .. ....+..+++.+.. ..+.||||| ...++++.|+.+|++ ..+.+|++||..
T Consensus 237 -----~~~~~l~~~~~~~g~~e~~~~~~~~~~~~----~~~~iLfiD----~~~~a~~~L~~~L~~--g~v~vI~at~~~ 301 (468)
T 3pxg_A 237 -----KRVMTLDMGTKYRGEFEDRLKKVMDEIRQ----AGNIILFID----AAIDASNILKPSLAR--GELQCIGATTLD 301 (468)
T ss_dssp -----CCEECC----------CTTHHHHHHHHHT----CCCCEEEEC----C--------CCCTTS--SSCEEEEECCTT
T ss_pred -----CeEEEeeCCccccchHHHHHHHHHHHHHh----cCCeEEEEe----CchhHHHHHHHhhcC--CCEEEEecCCHH
Confidence 0011111110 00 01345666766643 245799999 455678889999985 578999999877
Q ss_pred C-----cchHHHHccceEEEecCCChhHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCC------HHHHHHHHHHH
Q 036794 565 D-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK----EGIEIDKDALKLIASRSDGS------LRDAEMTLEQL 629 (1152)
Q Consensus 565 d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk----eGl~Id~dALelLAe~s~GD------LR~Ain~LEkL 629 (1152)
. .++++|.+||+.|.|++|+.+++..+|+.++.. .++.++++++..++.++.+. .+.+++.|+.+
T Consensus 302 e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a 381 (468)
T 3pxg_A 302 EYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEA 381 (468)
T ss_dssp TTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHH
Confidence 6 478899999999999999999999999988766 78899999999999885443 44688888876
Q ss_pred HH
Q 036794 630 SL 631 (1152)
Q Consensus 630 sL 631 (1152)
+.
T Consensus 382 ~~ 383 (468)
T 3pxg_A 382 GS 383 (468)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 54
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.63 E-value=3.6e-17 Score=176.43 Aligned_cols=212 Identities=17% Similarity=0.192 Sum_probs=146.5
Q ss_pred hhCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCC
Q 036794 414 KYMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCN 482 (1152)
Q Consensus 414 KyRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~ 482 (1152)
++.+.+|++|+|++.+++.|.+++.. ...+.++||+||||||||++|+++|+.+++.....+ |.
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~-----~~ 78 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMG-----GS 78 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCC-----SC
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEec-----hH
Confidence 55667899999999999888877652 344567999999999999999999999876533221 11
Q ss_pred ccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH---------------HHHHHHHH
Q 036794 483 SCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD---------------SWSAISKV 547 (1152)
Q Consensus 483 ~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e---------------aqnaLLkl 547 (1152)
.......+. +...++.+++.+... ...||||||+|.+... .++.|+..
T Consensus 79 ~~~~~~~~~-------------~~~~~~~~~~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~ 141 (268)
T 2r62_A 79 SFIEMFVGL-------------GASRVRDLFETAKKQ----APSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAE 141 (268)
T ss_dssp TTTTSCSSS-------------CSSSSSTTHHHHHHS----CSCEEEESCGGGTTC----------CCCSCSSTTTTTTT
T ss_pred HHHHhhcch-------------HHHHHHHHHHHHHhc----CCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHH
Confidence 111110010 011122344444322 3479999999998653 35567777
Q ss_pred HhhCC---CCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHH
Q 036794 548 VDRAP---RRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLR 620 (1152)
Q Consensus 548 LEepp---~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR 620 (1152)
++... ..++||++||.++.+++++.+ |+. .+.|+.|+.+++.++|+.++....+. ++..++.|+..+.| ..+
T Consensus 142 l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~ 220 (268)
T 2r62_A 142 MDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGA 220 (268)
T ss_dssp TTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHH
T ss_pred hhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHH
Confidence 77632 358899999999888888888 664 58999999999999998887654332 22235667777766 567
Q ss_pred HHHHHHHHHHHhC-----CCCCHHHHHHHHhcc
Q 036794 621 DAEMTLEQLSLLG-----QRISVPLVQELVGLI 648 (1152)
Q Consensus 621 ~Ain~LEkLsLlg-----~~IT~EdV~elVg~v 648 (1152)
++.+.++.++..+ ..|+.+++.+++...
T Consensus 221 dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 253 (268)
T 2r62_A 221 DLANIINEAALLAGRNNQKEVRQQHLKEAVERG 253 (268)
T ss_dssp HHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 8888888887663 359999998877643
No 55
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.62 E-value=1.3e-15 Score=173.15 Aligned_cols=211 Identities=21% Similarity=0.208 Sum_probs=138.9
Q ss_pred CcccCcHHHHHHHHHHHH----h-------------------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 421 RDLVGQNLVAQALSNAVM----R-------------------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~----~-------------------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
+.|+||+.+++.|..++. . ....+.+||+||||||||++|++||+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 458999999999988772 1 12345699999999999999999999986432
Q ss_pred CCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH------------
Q 036794 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD------------ 539 (1152)
Q Consensus 472 ~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e------------ 539 (1152)
. . ..|..+.... + + +......+..++.........+.++||||||++.+...
T Consensus 101 ~-------~-~~~~~~~~~~---~--~---g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~ 164 (376)
T 1um8_A 101 A-------I-SDATSLTEAG---Y--V---GEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSG 164 (376)
T ss_dssp E-------E-EEGGGCC----------------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------C
T ss_pred E-------E-ecchhhhhcC---c--C---CccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccch
Confidence 1 1 1122211100 0 0 00011223333333211101135689999999999887
Q ss_pred --HHHHHHHHHhhCC---------------------CCEEEEEEcCC---------------------------------
Q 036794 540 --SWSAISKVVDRAP---------------------RRVVFILVSSS--------------------------------- 563 (1152)
Q Consensus 540 --aqnaLLklLEepp---------------------~~VifILaTN~--------------------------------- 563 (1152)
.++.|+++|++.. .+++||+++|.
T Consensus 165 ~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~ 244 (376)
T 1um8_A 165 EGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILH 244 (376)
T ss_dssp HHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGG
T ss_pred HHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHh
Confidence 8999999999631 45678887761
Q ss_pred --------CCcchHHHHccc-eEEEecCCChhHHHHHHHH----HHH-------H--cCCCCCHHHHHHHHHh-c--CCC
Q 036794 564 --------LDALPHIIISRC-QKFFFPKMKDADIIYTLQW----IAS-------K--EGIEIDKDALKLIASR-S--DGS 618 (1152)
Q Consensus 564 --------~dkL~~aL~SR~-qvI~F~~p~~~EI~eiL~~----iak-------k--eGl~Id~dALelLAe~-s--~GD 618 (1152)
...+.++|.+|+ .++.|++++.+++..++.. ++. . .++.++++++++|+.+ + .||
T Consensus 245 ~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 324 (376)
T 1um8_A 245 LVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTG 324 (376)
T ss_dssp GCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCT
T ss_pred hcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccC
Confidence 012567899999 6799999999999988862 211 1 2456899999999999 4 399
Q ss_pred HHHHHHHHHHHHHh-----C----C--CCCHHHHHHHHhc
Q 036794 619 LRDAEMTLEQLSLL-----G----Q--RISVPLVQELVGL 647 (1152)
Q Consensus 619 LR~Ain~LEkLsLl-----g----~--~IT~EdV~elVg~ 647 (1152)
+|.+.+.|+++... . + .||.++|.+....
T Consensus 325 ~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 325 ARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEP 364 (376)
T ss_dssp GGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSCC
T ss_pred cHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCCCc
Confidence 99999999997542 1 1 3888888775543
No 56
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.62 E-value=1.6e-15 Score=187.96 Aligned_cols=188 Identities=18% Similarity=0.280 Sum_probs=137.0
Q ss_pred cCcccCcHHHHHHHHHHHHhCCCC--------cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCC
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKVG--------LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK 491 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri~--------~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~ 491 (1152)
..+++||+.+++.|..++...... ..+||+||||||||++|+++|+.+..... ++. ...|..+...
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~----~~i-~i~~s~~~~~- 563 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEE----SMI-RIDMSEYMEK- 563 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTT----CEE-EEEGGGGCSS-
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCc----ceE-EEechhcccc-
Confidence 467999999999999998864321 26999999999999999999999854321 111 1112222111
Q ss_pred ccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-----------CCCCEEEEEE
Q 036794 492 SRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-----------APRRVVFILV 560 (1152)
Q Consensus 492 ~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-----------pp~~VifILa 560 (1152)
.... ...+.+.+.. ..+.||||||++.++.+.++.|+++|++ ...+++||++
T Consensus 564 ----~~~~---------~~~l~~~~~~----~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 564 ----HSTS---------GGQLTEKVRR----KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp ----CCCC------------CHHHHHH----CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred ----cccc---------cchhhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 1000 1112222222 2357999999999999999999999998 3468899999
Q ss_pred cCCCCc------------chHHHHccc-eEEEecCCChhHHHHHHHHHHHH---------cCCCCCHHHHHHHHHh---c
Q 036794 561 SSSLDA------------LPHIIISRC-QKFFFPKMKDADIIYTLQWIASK---------EGIEIDKDALKLIASR---S 615 (1152)
Q Consensus 561 TN~~dk------------L~~aL~SR~-qvI~F~~p~~~EI~eiL~~iakk---------eGl~Id~dALelLAe~---s 615 (1152)
||.... +.++|++|+ .+|.|++++.+++..++...+.. ..+.++++++++|+.. |
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 706 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDL 706 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCT
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCC
Confidence 995432 788899999 68999999999999988877654 2456899999999875 8
Q ss_pred CCCHHHHHHHHHHHH
Q 036794 616 DGSLRDAEMTLEQLS 630 (1152)
Q Consensus 616 ~GDLR~Ain~LEkLs 630 (1152)
+|++|.+.+.|+++.
T Consensus 707 ~~~~R~L~~~i~~~v 721 (758)
T 3pxi_A 707 EYGARPLRRAIQKHV 721 (758)
T ss_dssp TTTTTTHHHHHHHHT
T ss_pred CCCChHHHHHHHHHH
Confidence 899999999999863
No 57
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.62 E-value=1.7e-15 Score=187.39 Aligned_cols=197 Identities=18% Similarity=0.281 Sum_probs=142.7
Q ss_pred CcccCcHHHHHHHHHHHHhCC--------CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCC-
Q 036794 421 RDLVGQNLVAQALSNAVMRRK--------VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK- 491 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~gr--------i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~- 491 (1152)
.+++||+.++..|..++.... ....+||+||+|||||++|+++|+.+++.... ..|..+....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~--------i~~s~~~~~~~ 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR--------FDMSEYMERHT 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEE--------EEGGGCSSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEE--------Eechhhcchhh
Confidence 579999999999988887532 22379999999999999999999998643211 1122211110
Q ss_pred ccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-----------CCEEEEEE
Q 036794 492 SRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-----------RRVVFILV 560 (1152)
Q Consensus 492 ~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-----------~~VifILa 560 (1152)
...++. .+.+..+.+....+.+.+... .+.||||||++.++++.++.|+++|++.. .+++||++
T Consensus 530 ~~~l~g-~~~g~~g~~~~~~l~~~~~~~----~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 530 VSRLIG-APPGYVGFDQGGLLTDAVIKH----PHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp CSSSCC-CCSCSHHHHHTTHHHHHHHHC----SSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred HhhhcC-CCCCCcCccccchHHHHHHhC----CCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 000110 112344444444444444443 36899999999999999999999999732 57889999
Q ss_pred cCCCC-------------------------cchHHHHccc-eEEEecCCChhHHHHHHHHHHHHc---------CCCCCH
Q 036794 561 SSSLD-------------------------ALPHIIISRC-QKFFFPKMKDADIIYTLQWIASKE---------GIEIDK 605 (1152)
Q Consensus 561 TN~~d-------------------------kL~~aL~SR~-qvI~F~~p~~~EI~eiL~~iakke---------Gl~Id~ 605 (1152)
||... .+.++|++|+ .+|.|++++.+++..++...+.+. .+.+++
T Consensus 605 sN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 684 (758)
T 1r6b_X 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQ 684 (758)
T ss_dssp ECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECH
T ss_pred cCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCH
Confidence 98632 5778899999 579999999999999988877632 357899
Q ss_pred HHHHHHHHh-cCCC--HHHHHHHHHHHH
Q 036794 606 DALKLIASR-SDGS--LRDAEMTLEQLS 630 (1152)
Q Consensus 606 dALelLAe~-s~GD--LR~Ain~LEkLs 630 (1152)
+++++|+.+ |+++ .|.+.+.|+++.
T Consensus 685 ~a~~~l~~~~~~~~~g~R~l~~~i~~~~ 712 (758)
T 1r6b_X 685 EARNWLAEKGYDRAMGARPMARVIQDNL 712 (758)
T ss_dssp HHHHHHHHHHCBTTTBTTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCCCchHHHHHHHHHH
Confidence 999999987 5555 999999998864
No 58
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.61 E-value=1.6e-15 Score=181.62 Aligned_cols=211 Identities=18% Similarity=0.245 Sum_probs=141.1
Q ss_pred cCcccCcHHHHHHHHHHHHh-----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccc
Q 036794 420 FRDLVGQNLVAQALSNAVMR-----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRN 494 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~-----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~d 494 (1152)
.++++|++.++..+...+.- .-.+..+||+||||||||++|++||..++....... |... .+
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~--------~~~~-----~~ 146 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRIS--------LGGV-----RD 146 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEEC--------CCC--------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEE--------eccc-----ch
Confidence 45689999998888765432 123457999999999999999999999865432111 1111 00
Q ss_pred eEEeCCC--CCC--CHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH----HHHHHHHHHhhCC--------------
Q 036794 495 IKEVGPV--GNF--DFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD----SWSAISKVVDRAP-------------- 552 (1152)
Q Consensus 495 viEIdaa--s~~--~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e----aqnaLLklLEepp-------------- 552 (1152)
..++... ... ....+...+..+ .....|+||||+|.+... .+++|+++|+...
T Consensus 147 ~~~~~g~~~~~ig~~~~~~~~~~~~a-----~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~ 221 (543)
T 3m6a_A 147 ESEIRGHRRTYVGAMPGRIIQGMKKA-----GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFD 221 (543)
T ss_dssp -----------------CHHHHHHTT-----CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCB
T ss_pred hhhhhhHHHHHhccCchHHHHHHHHh-----hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeec
Confidence 0011000 000 111223333322 123459999999999887 4588999997522
Q ss_pred -CCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHh--cCCCH
Q 036794 553 -RRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIA-----SKE-----GIEIDKDALKLIASR--SDGSL 619 (1152)
Q Consensus 553 -~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~ia-----kke-----Gl~Id~dALelLAe~--s~GDL 619 (1152)
.+++||++||.++.++++|++||.+|.|++|+.++...++..++ +.. ++.++++++..|+.. ++|++
T Consensus 222 ~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~v 301 (543)
T 3m6a_A 222 LSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGV 301 (543)
T ss_dssp CSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSS
T ss_pred ccceEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhch
Confidence 57899999999999999999999999999999999998887765 223 456899999998875 56899
Q ss_pred HHHHHHHHHHHHh-------C--C--CCCHHHHHHHHhcc
Q 036794 620 RDAEMTLEQLSLL-------G--Q--RISVPLVQELVGLI 648 (1152)
Q Consensus 620 R~Ain~LEkLsLl-------g--~--~IT~EdV~elVg~v 648 (1152)
|.+.+.++.++.. . + .||.+++.++++..
T Consensus 302 R~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 302 RSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 9999999886432 1 1 36777777777653
No 59
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.61 E-value=7e-15 Score=165.47 Aligned_cols=217 Identities=12% Similarity=0.072 Sum_probs=139.4
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHh---CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCC-CC-CCCcc
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMR---RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKP-CG-FCNSC 484 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~---gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~ep-cg-~c~~c 484 (1152)
.+.+-|.|.. -|.|.+..+..|...+.. +..+..+||+||||||||++++.+++++.........| +. ..-+|
T Consensus 11 ~l~~~~~~~~--~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc 88 (318)
T 3te6_A 11 SIRESLQKRE--LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDA 88 (318)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEET
T ss_pred hhhhccCCcc--ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEec
Confidence 3444555422 277877666666544433 34555789999999999999999999986432111111 11 11222
Q ss_pred ccccCCCc------cceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh---hCCCCE
Q 036794 485 ISHDRGKS------RNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVD---RAPRRV 555 (1152)
Q Consensus 485 ~~i~~g~~------~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLE---epp~~V 555 (1152)
..+..... ..+...........+.+..+++.+.. ......||||||+|.|. .++.|+.+++ ....++
T Consensus 89 ~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~--~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~ 164 (318)
T 3te6_A 89 LELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPK--AKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKL 164 (318)
T ss_dssp TCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCG--GGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCE
T ss_pred cccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhh--ccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcE
Confidence 22211000 00000000011223455555555310 12445799999999998 5667777765 345689
Q ss_pred EEEEEcCCCCc----chHHHHccc--eEEEecCCChhHHHHHHHHHHHHcC-----------------------------
Q 036794 556 VFILVSSSLDA----LPHIIISRC--QKFFFPKMKDADIIYTLQWIASKEG----------------------------- 600 (1152)
Q Consensus 556 ifILaTN~~dk----L~~aL~SR~--qvI~F~~p~~~EI~eiL~~iakkeG----------------------------- 600 (1152)
+||+++|..+. +++.+.+|+ .+|.|++++.+++.++|+.+++...
T Consensus 165 ~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (318)
T 3te6_A 165 SIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPD 244 (318)
T ss_dssp EEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CT
T ss_pred EEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccc
Confidence 99999998763 445567887 5799999999999999999987631
Q ss_pred ------CCCCHHHHHHHHHh---cCCCHHHHHHHHHHHHHh
Q 036794 601 ------IEIDKDALKLIASR---SDGSLRDAEMTLEQLSLL 632 (1152)
Q Consensus 601 ------l~Id~dALelLAe~---s~GDLR~Ain~LEkLsLl 632 (1152)
+.++++|++++|+. ..||+|.|+++|+.++..
T Consensus 245 ~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ 285 (318)
T 3te6_A 245 NVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEI 285 (318)
T ss_dssp TEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 13799999999994 789999999999998755
No 60
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.61 E-value=3.5e-15 Score=177.13 Aligned_cols=208 Identities=20% Similarity=0.234 Sum_probs=145.6
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
.+.+|++|+|+++++..|.+.+.. .+++.++||+||||||||++|++||..+...+. + ..|
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i-------~-i~g 97 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFI-------T-ASG 97 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEE-------E-EEG
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE-------E-Eeh
Confidence 556899999999999988877653 234668999999999999999999998753211 0 011
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhh
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKVVDR 550 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLklLEe 550 (1152)
..+.. .........++.+++.+. .....++||||+|.+.. ...+.|+..|+.
T Consensus 98 ~~~~~----------~~~g~~~~~v~~lfq~a~----~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 98 SDFVE----------MFVGVGAARVRDLFETAK----RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp GGGTS----------SCTTHHHHHHHHHTTTSS----SSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred hHHHH----------hhhhhHHHHHHHHHHHHH----hcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 11100 000011233444444332 12347999999988742 234566666664
Q ss_pred --CCCCEEEEEEcCCCCcchHHHHcc--ce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCCCH-HHHH
Q 036794 551 --APRRVVFILVSSSLDALPHIIISR--CQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASRSDGSL-RDAE 623 (1152)
Q Consensus 551 --pp~~VifILaTN~~dkL~~aL~SR--~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~s~GDL-R~Ai 623 (1152)
....+++|++||.++.++++++++ +. .+.|+.|+.+++.++|+.+++ ++.+++++ +..|+..|+|+. +++.
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G~~gadL~ 241 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLE 241 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCSCCHHHHH
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCCCCHHHHH
Confidence 335678888899999899999884 43 689999999999998876654 45566554 888999999988 9999
Q ss_pred HHHHHHHHhC-----CCCCHHHHHHHHhc
Q 036794 624 MTLEQLSLLG-----QRISVPLVQELVGL 647 (1152)
Q Consensus 624 n~LEkLsLlg-----~~IT~EdV~elVg~ 647 (1152)
+.++.+++++ ..|+.+++.+++..
T Consensus 242 ~lv~~Aa~~A~~~~~~~It~~dl~~al~~ 270 (499)
T 2dhr_A 242 NLLNEAALLAAREGRRKITMKDLEEAADR 270 (499)
T ss_dssp HHHHHHHHHHTTTCCSSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 9999987652 35999998887754
No 61
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.60 E-value=8.7e-16 Score=192.79 Aligned_cols=202 Identities=20% Similarity=0.275 Sum_probs=139.8
Q ss_pred cCcccCcHHHHHHHHHHHHhCCC--------CcEEEEEcCCCchHHHHHHHHHHHHcccCCCC-CCCCCCCCccccccCC
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKV--------GLLYVFYGPHGTGKTSCARIFARALNCQSLEQ-PKPCGFCNSCISHDRG 490 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri--------~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~-~epcg~c~~c~~i~~g 490 (1152)
+.+|+|++.+++.|..++..... ...+||+||+|||||++|++||+.+.+..... ...|..+..+...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~--- 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV--- 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG---
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH---
Confidence 46799999999999998876431 24799999999999999999999986532111 0112221111110
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-----------CCEEEEE
Q 036794 491 KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-----------RRVVFIL 559 (1152)
Q Consensus 491 ~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-----------~~VifIL 559 (1152)
..++. .+.+.++.+....+...+...| +.||||||++.++.+.++.|+++|++.. .+++||+
T Consensus 634 --s~l~g-~~~~~~G~~~~g~l~~~~~~~~----~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ 706 (854)
T 1qvr_A 634 --SRLIG-APPGYVGYEEGGQLTEAVRRRP----YSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIIL 706 (854)
T ss_dssp --GGC---------------CHHHHHHHCS----SEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEE
T ss_pred --HHHcC-CCCCCcCccccchHHHHHHhCC----CeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEE
Confidence 01110 1122334443344444444433 5899999999999999999999999742 4788999
Q ss_pred EcCCC--------------------------CcchHHHHccc-eEEEecCCChhHHHHHHHHHHHH-------c--CCCC
Q 036794 560 VSSSL--------------------------DALPHIIISRC-QKFFFPKMKDADIIYTLQWIASK-------E--GIEI 603 (1152)
Q Consensus 560 aTN~~--------------------------dkL~~aL~SR~-qvI~F~~p~~~EI~eiL~~iakk-------e--Gl~I 603 (1152)
+||.. ..+.+.|++|+ .++.|.+++.+++..++...+.+ . .+.+
T Consensus 707 tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~ 786 (854)
T 1qvr_A 707 TSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLEL 786 (854)
T ss_dssp ECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred ecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 99862 23567899999 46889999999999888776652 1 3569
Q ss_pred CHHHHHHHHHh-c--CCCHHHHHHHHHHHHH
Q 036794 604 DKDALKLIASR-S--DGSLRDAEMTLEQLSL 631 (1152)
Q Consensus 604 d~dALelLAe~-s--~GDLR~Ain~LEkLsL 631 (1152)
+++++++|+.+ | +||+|.+.+.++++..
T Consensus 787 ~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 787 TEAAKDFLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp CHHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred CHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence 99999999998 5 7999999999998643
No 62
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.60 E-value=4e-15 Score=161.50 Aligned_cols=189 Identities=16% Similarity=0.206 Sum_probs=125.6
Q ss_pred cCcccCcHHHHHHHHH-------HHHh--CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCC
Q 036794 420 FRDLVGQNLVAQALSN-------AVMR--RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~-------aL~~--gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g 490 (1152)
+..++|++..++.+.. .+.. ...++.+||+||+|||||++|+++|+.+++..... .|.....+
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i--------~~~~~~~g 103 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI--------CSPDKMIG 103 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE--------ECGGGCTT
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE--------eCHHHhcC
Confidence 3567887665554443 3332 44557899999999999999999999976542111 11110000
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCC----------CHHHHHHHHHHHhh---CCCCEEE
Q 036794 491 KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTL----------SPDSWSAISKVVDR---APRRVVF 557 (1152)
Q Consensus 491 ~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~L----------s~eaqnaLLklLEe---pp~~Vif 557 (1152)
.........++.+++.+.. ....+|||||+|.| ....++.|+..++. .+..+++
T Consensus 104 ---------~~~~~~~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 104 ---------FSETAKCQAMKKIFDDAYK----SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHT----SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ---------CchHHHHHHHHHHHHHHHh----cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 0000112345566665532 34689999999987 34455666666664 4457778
Q ss_pred EEEcCCCCcchH-HHHccc-eEEEecCCCh-hHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-----CHHHHHHHHHHH
Q 036794 558 ILVSSSLDALPH-IIISRC-QKFFFPKMKD-ADIIYTLQWIASKEGIEIDKDALKLIASRSDG-----SLRDAEMTLEQL 629 (1152)
Q Consensus 558 ILaTN~~dkL~~-aL~SR~-qvI~F~~p~~-~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-----DLR~Ain~LEkL 629 (1152)
|++||.++.+++ .+.+|+ ..|.|++++. +++..++.. . ..++++++..|+..+.| |+|++++.++.+
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~----~-~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a 245 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL----L-GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMS 245 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH----H-TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh----c-CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Confidence 888888887776 578884 5789988877 555554432 2 25789999999999877 999999999998
Q ss_pred HHhCC
Q 036794 630 SLLGQ 634 (1152)
Q Consensus 630 sLlg~ 634 (1152)
.....
T Consensus 246 ~~~~~ 250 (272)
T 1d2n_A 246 LQMDP 250 (272)
T ss_dssp TTSCG
T ss_pred hhhch
Confidence 65543
No 63
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.60 E-value=9.6e-15 Score=173.04 Aligned_cols=197 Identities=15% Similarity=0.137 Sum_probs=144.7
Q ss_pred hhhCCCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCC
Q 036794 413 QKYMPRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF 480 (1152)
Q Consensus 413 eKyRP~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~ 480 (1152)
+.+.+..|++|+|++.+++.|.+++.. ...+.++|||||||||||++|++||+.+++.+..
T Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~------- 268 (489)
T 3hu3_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL------- 268 (489)
T ss_dssp HHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEE-------
T ss_pred cccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEE-------
Confidence 456777899999999999999988765 3666789999999999999999999987644211
Q ss_pred CCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHh
Q 036794 481 CNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKVVD 549 (1152)
Q Consensus 481 c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLklLE 549 (1152)
.+|..+... ........++.+++.+... ...+|||||+|.+.. ..++.|+.+|+
T Consensus 269 -vn~~~l~~~----------~~g~~~~~~~~~f~~A~~~----~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld 333 (489)
T 3hu3_A 269 -INGPEIMSK----------LAGESESNLRKAFEEAEKN----APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 333 (489)
T ss_dssp -EEHHHHHTS----------CTTHHHHHHHHHHHHHHHT----CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHH
T ss_pred -EEchHhhhh----------hcchhHHHHHHHHHHHHhc----CCcEEEecchhhhccccccccchHHHHHHHHHHHHhh
Confidence 122222110 0011234566677766432 347999999976643 56789999999
Q ss_pred h--CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHH
Q 036794 550 R--APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAE 623 (1152)
Q Consensus 550 e--pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ai 623 (1152)
. ...+++||++||.++.+++++.+ |+. .+.|+.|+.+++.++|+.+++...+.. +..+..++..+.| ..+++.
T Consensus 334 ~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~-~~~l~~la~~t~g~s~~dL~ 412 (489)
T 3hu3_A 334 GLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-DVDLEQVANETHGHVGADLA 412 (489)
T ss_dssp HSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT-TCCHHHHHHTCTTCCHHHHH
T ss_pred ccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc-hhhHHHHHHHccCCcHHHHH
Confidence 6 45689999999999999999998 665 599999999999999998877655432 2246778888777 566777
Q ss_pred HHHHHHHHh
Q 036794 624 MTLEQLSLL 632 (1152)
Q Consensus 624 n~LEkLsLl 632 (1152)
+++..+++.
T Consensus 413 ~L~~~A~~~ 421 (489)
T 3hu3_A 413 ALCSEAALQ 421 (489)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776544
No 64
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.59 E-value=2.6e-14 Score=153.33 Aligned_cols=209 Identities=21% Similarity=0.259 Sum_probs=142.9
Q ss_pred hhhCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCC
Q 036794 413 QKYMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFC 481 (1152)
Q Consensus 413 eKyRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c 481 (1152)
..+.+.+|++++|++.++..+.+.... -..+.+++|+||+|||||+++++++..+..... .
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i-------~- 79 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFI-------T- 79 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEE-------E-
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE-------E-
Confidence 345566899999999988888766543 134567999999999999999999988652210 0
Q ss_pred CccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHH
Q 036794 482 NSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKV 547 (1152)
Q Consensus 482 ~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLkl 547 (1152)
..+..+ .. .........+..+++.+.. ....++|+||+|.+.. ...+.|+..
T Consensus 80 ~~~~~~--------~~--~~~~~~~~~i~~~~~~~~~----~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~ 145 (254)
T 1ixz_A 80 ASGSDF--------VE--MFVGVGAARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE 145 (254)
T ss_dssp EEHHHH--------HH--SCTTHHHHHHHHHHHHHTT----SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHH
T ss_pred eeHHHH--------HH--HHhhHHHHHHHHHHHHHHh----cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHH
Confidence 000000 00 0000112345566666532 2347999999986521 124566666
Q ss_pred HhhC--CCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCCCH-H
Q 036794 548 VDRA--PRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASRSDGSL-R 620 (1152)
Q Consensus 548 LEep--p~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~s~GDL-R 620 (1152)
|+.. ...++++.+|+.++.+++++.+ |+. .+.|+.|+.+++.++++..++ ++.+++++ +..|+..+.|+. +
T Consensus 146 l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~ 223 (254)
T 1ixz_A 146 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGA 223 (254)
T ss_dssp HHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHH
T ss_pred HhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHHHHHHcCCCCHH
Confidence 6642 3456777888999999999988 554 589999999999999987664 45555554 888999999976 8
Q ss_pred HHHHHHHHHHHh----C-CCCCHHHHHHHH
Q 036794 621 DAEMTLEQLSLL----G-QRISVPLVQELV 645 (1152)
Q Consensus 621 ~Ain~LEkLsLl----g-~~IT~EdV~elV 645 (1152)
++.+.++.++.. + ..||.+++.+++
T Consensus 224 dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 224 DLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 999999887654 2 359999988765
No 65
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.58 E-value=3.2e-15 Score=149.41 Aligned_cols=165 Identities=18% Similarity=0.208 Sum_probs=117.5
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
..+|.++|+|..|++++|++..++.+..++..+. +..+||+||+|||||++|+.+++.+.+...... .
T Consensus 9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~-~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~----~------- 76 (195)
T 1jbk_A 9 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRT-KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEG----L------- 76 (195)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSS-SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGG----G-------
T ss_pred hHHHHHHHhhccccccccchHHHHHHHHHHhcCC-CCceEEECCCCCCHHHHHHHHHHHHHhCCCchh----h-------
Confidence 4578999999999999999999999999887754 345899999999999999999999876422110 0
Q ss_pred cCCCccceEEeCCC----CCCC----HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC--------HHHHHHHHHHHhhC
Q 036794 488 DRGKSRNIKEVGPV----GNFD----FESILDLLDNMVTSRPPSQYRIFVFDDCDTLS--------PDSWSAISKVVDRA 551 (1152)
Q Consensus 488 ~~g~~~dviEIdaa----s~~~----vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls--------~eaqnaLLklLEep 551 (1152)
....++.++.. .... ...+..++..+... ..+.||||||+|.+. ...++.|..+++.
T Consensus 77 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~- 149 (195)
T 1jbk_A 77 ---KGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQ---EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR- 149 (195)
T ss_dssp ---TTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHS---TTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-
T ss_pred ---cCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhc---CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc-
Confidence 00112222210 0011 12344455544322 445799999999985 3346777777765
Q ss_pred CCCEEEEEEcCCCC-----cchHHHHccceEEEecCCChhHHHHHH
Q 036794 552 PRRVVFILVSSSLD-----ALPHIIISRCQKFFFPKMKDADIIYTL 592 (1152)
Q Consensus 552 p~~VifILaTN~~d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL 592 (1152)
.++.+|++|+... .+++++.+||..+.|++|+.+++.++|
T Consensus 150 -~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 -GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp -TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred -CCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 4678888888765 577899999999999999999887654
No 66
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.55 E-value=1.4e-13 Score=150.06 Aligned_cols=206 Identities=21% Similarity=0.270 Sum_probs=140.0
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
.+.+|++|+|++.++..+.+.+.. -..+..++|+||+|||||+++++|+..+..... . ..|
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i-------~-~~~ 106 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFI-------T-ASG 106 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEE-------E-EEH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEE-------E-ecH
Confidence 455799999999998888766543 134557999999999999999999988752210 0 000
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HH---HHHHHHHHHhh
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PD---SWSAISKVVDR 550 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~e---aqnaLLklLEe 550 (1152)
..+ .. .........+..+++.+... ...++|+||++.+. .. ..+.++..|+.
T Consensus 107 ~~~--------~~--~~~~~~~~~i~~~~~~~~~~----~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsg 172 (278)
T 1iy2_A 107 SDF--------VE--MFVGVGAARVRDLFETAKRH----APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 172 (278)
T ss_dssp HHH--------HH--STTTHHHHHHHHHHHHHHTS----CSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTT
T ss_pred HHH--------HH--HHhhHHHHHHHHHHHHHHhc----CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhC
Confidence 000 00 00001123455666665321 24799999998652 11 22344444443
Q ss_pred --CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCCCH-HHHH
Q 036794 551 --APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASRSDGSL-RDAE 623 (1152)
Q Consensus 551 --pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~s~GDL-R~Ai 623 (1152)
....++++++|+.++.+++++.+ |+. .+.|+.|+.+++.++|+.+++ ++.+++++ +..++..+.|+. +++.
T Consensus 173 g~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~ 250 (278)
T 1iy2_A 173 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLE 250 (278)
T ss_dssp CCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred CCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCcccCHHHHHHHcCCCCHHHHH
Confidence 23457778888999999999988 454 689999999999999987764 45555554 888999999977 8899
Q ss_pred HHHHHHHHh----C-CCCCHHHHHHHH
Q 036794 624 MTLEQLSLL----G-QRISVPLVQELV 645 (1152)
Q Consensus 624 n~LEkLsLl----g-~~IT~EdV~elV 645 (1152)
+.++.++.. + ..|+.+++.+++
T Consensus 251 ~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 251 NLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 999887654 2 359999998765
No 67
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.55 E-value=8.4e-15 Score=177.39 Aligned_cols=226 Identities=16% Similarity=0.212 Sum_probs=150.2
Q ss_pred hhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCC----CC-------CCC
Q 036794 412 TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQP----KP-------CGF 480 (1152)
Q Consensus 412 ~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~----ep-------cg~ 480 (1152)
..+|+|+.|++++|++.+++.+..++..+. .+||+||+|||||++|++|+..+.+...... .+ |.+
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~g~---~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~ 108 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAANQKR---HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKT 108 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEE
T ss_pred cccccccccceEECchhhHhhccccccCCC---EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEE
Confidence 458999999999999999999999998874 5899999999999999999998765421000 00 111
Q ss_pred CCccccc------------------------cCCCc------------cceEEeCCCCCCCHHHHHHHHHHHhhCC----
Q 036794 481 CNSCISH------------------------DRGKS------------RNIKEVGPVGNFDFESILDLLDNMVTSR---- 520 (1152)
Q Consensus 481 c~~c~~i------------------------~~g~~------------~dviEIdaas~~~vdeIreLle~a~~~P---- 520 (1152)
|..|... ..... ..++... ... ..+++..+...+
T Consensus 109 ~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~---~~~---~~~L~G~~~~~~~~~g 182 (604)
T 3k1j_A 109 VPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDAT---GAH---AGALLGDVRHDPFQSG 182 (604)
T ss_dssp EETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECT---TCC---HHHHHCEECCCCC---
T ss_pred EecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcC---CCC---HHhcCceEEechhhcC
Confidence 1111000 00000 0011100 001 111221110000
Q ss_pred ---------------CCCCceEEEEeCCCCCCHHHHHHHHHHHhhC---------------------CCCEEEEEEcCCC
Q 036794 521 ---------------PPSQYRIFVFDDCDTLSPDSWSAISKVVDRA---------------------PRRVVFILVSSSL 564 (1152)
Q Consensus 521 ---------------~~a~~kVVIIDEID~Ls~eaqnaLLklLEep---------------------p~~VifILaTN~~ 564 (1152)
..+.++++||||++.|++..|+.|+++|++. +.++.||++||..
T Consensus 183 ~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~ 262 (604)
T 3k1j_A 183 GLGTPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLD 262 (604)
T ss_dssp -CCCCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHH
T ss_pred CccccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHH
Confidence 0135579999999999999999999999951 2478899999865
Q ss_pred --CcchHHHHccce----EEEecCC---ChhHHHHHHHHHHHHc-----CCCCCHHHHHHHHHhc---CC-------CHH
Q 036794 565 --DALPHIIISRCQ----KFFFPKM---KDADIIYTLQWIASKE-----GIEIDKDALKLIASRS---DG-------SLR 620 (1152)
Q Consensus 565 --dkL~~aL~SR~q----vI~F~~p---~~~EI~eiL~~iakke-----Gl~Id~dALelLAe~s---~G-------DLR 620 (1152)
..++++|++||. .+.|+.. ....+..++..+++.. ...++++++..|++++ .| ++|
T Consensus 263 ~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R 342 (604)
T 3k1j_A 263 TVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLR 342 (604)
T ss_dssp HHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHH
T ss_pred HHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHH
Confidence 578999999995 5666543 3334555665555432 2579999999999873 66 699
Q ss_pred HHHHHHHHHHHh-----CCCCCHHHHHHHHh
Q 036794 621 DAEMTLEQLSLL-----GQRISVPLVQELVG 646 (1152)
Q Consensus 621 ~Ain~LEkLsLl-----g~~IT~EdV~elVg 646 (1152)
++.++++.+..+ ...|+.++|.+++.
T Consensus 343 ~l~~llr~A~~~A~~~~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 343 DLGGIVRAAGDIAVKKGKKYVEREDVIEAVK 373 (604)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence 999999987544 23699999998874
No 68
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.55 E-value=2.6e-14 Score=176.77 Aligned_cols=223 Identities=16% Similarity=0.182 Sum_probs=156.1
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc--
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI-- 485 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~-- 485 (1152)
...|.++|+|..|++++|++..++.+.+.+..... ..+||+||||||||++|+++++.+.+...+.. . ..|.
T Consensus 173 ~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~-~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~----~-~~~~~~ 246 (758)
T 1r6b_X 173 TTNLNQLARVGGIDPLIGREKELERAIQVLCRRRK-NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV----M-ADCTIY 246 (758)
T ss_dssp SCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSS-CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGG----G-TTCEEE
T ss_pred hHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCC-CCeEEEcCCCCCHHHHHHHHHHHHHhCCCChh----h-cCCEEE
Confidence 45789999999999999999999999998876644 45899999999999999999999976532210 0 0110
Q ss_pred cccCCCccceEEeCCCCCC-C-HHHHHHHHHHHhhCCCCCCceEEEEeCCCCC---------CHHHHHHHHHHHhhCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNF-D-FESILDLLDNMVTSRPPSQYRIFVFDDCDTL---------SPDSWSAISKVVDRAPRR 554 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~-~-vdeIreLle~a~~~P~~a~~kVVIIDEID~L---------s~eaqnaLLklLEepp~~ 554 (1152)
....+. + +.+.... . ...+..+++.+.. ....||||||+|.+ ..+..+.|..+++. ..
T Consensus 247 ~~~~~~---l--~~~~~~~g~~e~~l~~~~~~~~~----~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~ 315 (758)
T 1r6b_X 247 SLDIGS---L--LAGTKYRGDFEKRFKALLKQLEQ----DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GK 315 (758)
T ss_dssp ECCCC--------CCCCCSSCHHHHHHHHHHHHSS----SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CC
T ss_pred EEcHHH---H--hccccccchHHHHHHHHHHHHHh----cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CC
Confidence 111000 0 0001111 1 2346666666532 24589999999998 23345566666664 57
Q ss_pred EEEEEEcCCCC-----cchHHHHccceEEEecCCChhHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC------CH
Q 036794 555 VVFILVSSSLD-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK----EGIEIDKDALKLIASRSDG------SL 619 (1152)
Q Consensus 555 VifILaTN~~d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk----eGl~Id~dALelLAe~s~G------DL 619 (1152)
+.+|++|+.++ .++++|.+||+.+.|++|+.+++.++|..++.. .++.++++++..++..+.| ..
T Consensus 316 ~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp 395 (758)
T 1r6b_X 316 IRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLP 395 (758)
T ss_dssp CEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTT
T ss_pred eEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCc
Confidence 78888887542 356789999999999999999999999887765 6888999999999887543 23
Q ss_pred HHHHHHHHHHHHh---------CCCCCHHHHHHHHhc
Q 036794 620 RDAEMTLEQLSLL---------GQRISVPLVQELVGL 647 (1152)
Q Consensus 620 R~Ain~LEkLsLl---------g~~IT~EdV~elVg~ 647 (1152)
..++..++.++.. ...|+.++|.+++..
T Consensus 396 ~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~ 432 (758)
T 1r6b_X 396 DKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVAR 432 (758)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHH
Confidence 4677777765432 235888888877643
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.54 E-value=2.3e-14 Score=177.53 Aligned_cols=198 Identities=16% Similarity=0.153 Sum_probs=142.6
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
...|.++|+|..|++++|++..++.|...+...... .+||+||||||||++|++||+.+.+...+.. . ..|.
T Consensus 167 ~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~-~vLL~G~pGtGKT~la~~la~~l~~~~~p~~----l-~~~~-- 238 (758)
T 3pxi_A 167 ARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKN-NPVLIGEPGVGKTAIAEGLAQQIINNEVPEI----L-RDKR-- 238 (758)
T ss_dssp CCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSC-EEEEESCTTTTTHHHHHHHHHHHHSSCSCTT----T-SSCC--
T ss_pred HHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCC-CeEEECCCCCCHHHHHHHHHHHHhcCCCChh----h-cCCe--
Confidence 457889999999999999999999999999876555 4899999999999999999999876433221 0 0010
Q ss_pred cCCCccceEEeCC-CC--CCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 488 DRGKSRNIKEVGP-VG--NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 488 ~~g~~~dviEIda-as--~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
++.++. .. ......++.++..+.. ..+.||||| ...++++.|+.+|+. ..+++|++||..
T Consensus 239 -------~~~~~~g~~~~G~~e~~l~~~~~~~~~----~~~~iLfiD----~~~~~~~~L~~~l~~--~~v~~I~at~~~ 301 (758)
T 3pxi_A 239 -------VMTLDMGTKYRGEFEDRLKKVMDEIRQ----AGNIILFID----AAIDASNILKPSLAR--GELQCIGATTLD 301 (758)
T ss_dssp -------EECC----------CTTHHHHHHHHHT----CCCCEEEEC----C--------CCCTTS--SSCEEEEECCTT
T ss_pred -------EEEecccccccchHHHHHHHHHHHHHh----cCCEEEEEc----CchhHHHHHHHHHhc--CCEEEEeCCChH
Confidence 111111 00 0011245667766643 345799999 455678889888885 678999999877
Q ss_pred C-----cchHHHHccceEEEecCCChhHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHH
Q 036794 565 D-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK----EGIEIDKDALKLIASRSDG------SLRDAEMTLEQL 629 (1152)
Q Consensus 565 d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk----eGl~Id~dALelLAe~s~G------DLR~Ain~LEkL 629 (1152)
. .++++|.+||+.|.|+.|+.+++..+|+.++.. .++.++++++..++.++.+ ....++..++.+
T Consensus 302 ~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a 381 (758)
T 3pxi_A 302 EYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEA 381 (758)
T ss_dssp TTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHH
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHH
Confidence 6 588899999999999999999999999977765 6888999999999887432 346778888776
Q ss_pred H
Q 036794 630 S 630 (1152)
Q Consensus 630 s 630 (1152)
+
T Consensus 382 ~ 382 (758)
T 3pxi_A 382 G 382 (758)
T ss_dssp H
T ss_pred H
Confidence 4
No 70
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.54 E-value=5e-15 Score=167.76 Aligned_cols=191 Identities=23% Similarity=0.277 Sum_probs=128.2
Q ss_pred cccCcHHHHHHHHHHHHh--------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 422 DLVGQNLVAQALSNAVMR--------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~--------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
.|+||+.+++.|..++.. ...+..+||+||||||||++|++||+.++..... ..|..+
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~--------~~~~~l 87 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTM--------ADATTL 87 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE--------EEHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEE--------echHHh
Confidence 379999999999988831 1134579999999999999999999998644211 111111
Q ss_pred cCCCccceEEeCCCCCCCH---HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH--------------HHHHHHHHHhh
Q 036794 488 DRGKSRNIKEVGPVGNFDF---ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD--------------SWSAISKVVDR 550 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~~~v---deIreLle~a~~~P~~a~~kVVIIDEID~Ls~e--------------aqnaLLklLEe 550 (1152)
.. ...++. ..+..++.........+.+.||||||+|.+... .++.|+++|+.
T Consensus 88 ~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg 156 (363)
T 3hws_A 88 TE-----------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEG 156 (363)
T ss_dssp TT-----------CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHC
T ss_pred cc-----------cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcC
Confidence 10 001111 223334333211101134579999999988766 89999999993
Q ss_pred ---------------------CCCCEEEEEEcCCC----------Cc---------------------------------
Q 036794 551 ---------------------APRRVVFILVSSSL----------DA--------------------------------- 566 (1152)
Q Consensus 551 ---------------------pp~~VifILaTN~~----------dk--------------------------------- 566 (1152)
...+++||++++.. .+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~ 236 (363)
T 3hws_A 157 TVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIK 236 (363)
T ss_dssp C----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHH
T ss_pred ceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHH
Confidence 12345566666532 11
Q ss_pred --chHHHHccceE-EEecCCChhHHHHHHHH----HH-------HHcC--CCCCHHHHHHHHHh---cCCCHHHHHHHHH
Q 036794 567 --LPHIIISRCQK-FFFPKMKDADIIYTLQW----IA-------SKEG--IEIDKDALKLIASR---SDGSLRDAEMTLE 627 (1152)
Q Consensus 567 --L~~aL~SR~qv-I~F~~p~~~EI~eiL~~----ia-------kkeG--l~Id~dALelLAe~---s~GDLR~Ain~LE 627 (1152)
+.+.|++|+.. +.|.+++.+++.+++.. ++ ...+ +.+++++++.|+.+ ++++.|.+.|.++
T Consensus 237 ~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie 316 (363)
T 3hws_A 237 FGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVE 316 (363)
T ss_dssp HTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHH
T ss_pred cCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHH
Confidence 67889999996 56999999988777764 22 2223 45899999999964 7889999999999
Q ss_pred HHHH
Q 036794 628 QLSL 631 (1152)
Q Consensus 628 kLsL 631 (1152)
++..
T Consensus 317 ~~~~ 320 (363)
T 3hws_A 317 AALL 320 (363)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9753
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.53 E-value=2.3e-14 Score=180.00 Aligned_cols=206 Identities=16% Similarity=0.159 Sum_probs=143.8
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
...+|+++|+|..|++++|++..+..+...+..+... .+||+||||||||++|+++|+.+.+...+...
T Consensus 156 ~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~-~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l---------- 224 (854)
T 1qvr_A 156 YGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKN-NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGL---------- 224 (854)
T ss_dssp HEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCC-CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTS----------
T ss_pred HHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCC-ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhh----------
Confidence 3568899999999999999999999999998876554 47899999999999999999998654322110
Q ss_pred ccCCCccceEEeCCCC------C--CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC--------HHHHHHHHHHHhh
Q 036794 487 HDRGKSRNIKEVGPVG------N--FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS--------PDSWSAISKVVDR 550 (1152)
Q Consensus 487 i~~g~~~dviEIdaas------~--~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls--------~eaqnaLLklLEe 550 (1152)
. ...++.++... . .....+..++..+... ....||||||+|.+. .++.+.|..+++.
T Consensus 225 --~--~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~ 297 (854)
T 1qvr_A 225 --K--GKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQS---QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR 297 (854)
T ss_dssp --T--TCEEEEECC-----------CHHHHHHHHHHHHHTT---CSSEEEEECCC-------------------HHHHHT
T ss_pred --c--CCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhc---CCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC
Confidence 0 01122222111 0 1123466667666432 345799999999986 4556778888876
Q ss_pred CCCCEEEEEEcCCCC----cchHHHHccceEEEecCCChhHHHHHHHHHHH----HcCCCCCHHHHHHHHHhcCC-----
Q 036794 551 APRRVVFILVSSSLD----ALPHIIISRCQKFFFPKMKDADIIYTLQWIAS----KEGIEIDKDALKLIASRSDG----- 617 (1152)
Q Consensus 551 pp~~VifILaTN~~d----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iak----keGl~Id~dALelLAe~s~G----- 617 (1152)
..+.+|++|+... .++++|.+||+.|.|++|+.+++..+|+.++. ..++.++++++..++..+.|
T Consensus 298 --~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~ 375 (854)
T 1qvr_A 298 --GELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITER 375 (854)
T ss_dssp --TCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSS
T ss_pred --CCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccc
Confidence 5677888888653 25778999999999999999999999987765 35889999999999988543
Q ss_pred -CHHHHHHHHHHHHHh
Q 036794 618 -SLRDAEMTLEQLSLL 632 (1152)
Q Consensus 618 -DLR~Ain~LEkLsLl 632 (1152)
-...++..++.++..
T Consensus 376 ~lp~kai~lldea~a~ 391 (854)
T 1qvr_A 376 RLPDKAIDLIDEAAAR 391 (854)
T ss_dssp CTHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHH
Confidence 267788888887543
No 72
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.51 E-value=1.4e-14 Score=145.03 Aligned_cols=158 Identities=14% Similarity=0.161 Sum_probs=111.8
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
...+|.++|+|..|++++|++..+..+..++..+.. ..+||+||+|||||++|+.+++.+.+...+.. .
T Consensus 8 ~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~-~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~----~------ 76 (187)
T 2p65_A 8 YSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTK-NNPILLGDPGVGKTAIVEGLAIKIVQGDVPDS----L------ 76 (187)
T ss_dssp TEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSS-CEEEEESCGGGCHHHHHHHHHHHHHTTCSCTT----T------
T ss_pred HHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCC-CceEEECCCCCCHHHHHHHHHHHHHhcCCcch----h------
Confidence 356889999999999999999999999998877544 45799999999999999999999865321110 0
Q ss_pred ccCCCccceEEeCCC------CC--CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC---------HHHHHHHHHHHh
Q 036794 487 HDRGKSRNIKEVGPV------GN--FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS---------PDSWSAISKVVD 549 (1152)
Q Consensus 487 i~~g~~~dviEIdaa------s~--~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls---------~eaqnaLLklLE 549 (1152)
....++.++.. .. .....+..++..+... ..+.+|||||+|.+. .+.++.|..+++
T Consensus 77 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~ 149 (187)
T 2p65_A 77 ----KGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDA---EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLA 149 (187)
T ss_dssp ----TTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHT---TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHH
T ss_pred ----cCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhc---CCceEEEEeCHHHhcccccccccchHHHHHHHHHHh
Confidence 00112222210 00 0112344455554332 345799999999986 456777878877
Q ss_pred hCCCCEEEEEEcCCCC-----cchHHHHccceEEEecCCC
Q 036794 550 RAPRRVVFILVSSSLD-----ALPHIIISRCQKFFFPKMK 584 (1152)
Q Consensus 550 epp~~VifILaTN~~d-----kL~~aL~SR~qvI~F~~p~ 584 (1152)
. ..++||++++.+. .+++++.+||..+.|++|+
T Consensus 150 ~--~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 150 R--GELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp T--TCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred c--CCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 6 5678888888654 4788999999999988774
No 73
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.47 E-value=8.2e-14 Score=173.07 Aligned_cols=190 Identities=16% Similarity=0.158 Sum_probs=136.4
Q ss_pred CCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 417 PRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 417 P~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
..+|+||.|.+.+++.|++.+.. ...+.++|||||||||||++|+++|+++++.... ..|
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~--------v~~ 271 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL--------ING 271 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEE--------EEH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEE--------EEh
Confidence 35799999999999999887753 2456799999999999999999999988765211 011
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhhC--
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKVVDRA-- 551 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLklLEep-- 551 (1152)
..+. ..........++.+++.+.. ..+.||||||+|.+.. ...+.|+..|+..
T Consensus 272 ~~l~----------sk~~gese~~lr~lF~~A~~----~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~ 337 (806)
T 3cf2_A 272 PEIM----------SKLAGESESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp HHHH----------SSCTTHHHHHHHHHHHHHTT----SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG
T ss_pred HHhh----------cccchHHHHHHHHHHHHHHH----cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc
Confidence 1110 11111224557788887753 3458999999999843 2456777777763
Q ss_pred CCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHH
Q 036794 552 PRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-SLRDAEMTL 626 (1152)
Q Consensus 552 p~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-DLR~Ain~L 626 (1152)
..++++|++||.++.++++|++ |+. .|.|+.|+..++.++|+.+++... +.++ .+..|+..+.| ...++.+++
T Consensus 338 ~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~--~~~dvdl~~lA~~T~GfsgaDL~~Lv 415 (806)
T 3cf2_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVANETHGHVGADLAALC 415 (806)
T ss_dssp GGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE--ECTTCCHHHHHHHCCSCCHHHHHHHH
T ss_pred cCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC--CCcccCHHHHHHhcCCCCHHHHHHHH
Confidence 3579999999999999999998 777 599999999999999987765432 2222 37778888776 556666666
Q ss_pred HHHH
Q 036794 627 EQLS 630 (1152)
Q Consensus 627 EkLs 630 (1152)
..++
T Consensus 416 ~eA~ 419 (806)
T 3cf2_A 416 SEAA 419 (806)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 74
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.46 E-value=1.5e-13 Score=158.03 Aligned_cols=213 Identities=15% Similarity=0.151 Sum_probs=137.7
Q ss_pred cCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCC-ccceEE
Q 036794 420 FRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK-SRNIKE 497 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~-~~dviE 497 (1152)
|..++|++..++.+...+.. ......+||+|++|||||++|++++....... .|+. ..+|..+.... ...++.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~----~~fv-~v~~~~~~~~~~~~elfg 210 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSK----EPFV-ALNVASIPRDIFEAELFG 210 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTT----SCEE-EEETTTSCHHHHHHHHHC
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCC----CCeE-EEecCCCCHHHHHHHhcC
Confidence 67899998888888776655 33444589999999999999999998754321 1111 11222211000 000000
Q ss_pred eCCCCCCCH-HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCCC-
Q 036794 498 VGPVGNFDF-ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSSL- 564 (1152)
Q Consensus 498 Idaas~~~v-deIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~~- 564 (1152)
.......+. .....+++. +.++++||||++.|+.+.|..|+++|++. +.++++|++||..
T Consensus 211 ~~~g~~tga~~~~~g~~~~-------a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l 283 (387)
T 1ny5_A 211 YEKGAFTGAVSSKEGFFEL-------ADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNI 283 (387)
T ss_dssp BCTTSSTTCCSCBCCHHHH-------TTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCH
T ss_pred CCCCCCCCcccccCCceee-------CCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCH
Confidence 000000000 000012222 45689999999999999999999999972 2578899999853
Q ss_pred ------CcchHHHHccceE--EEecCCCh--hHHHHHHHH----HHHHcCC---CCCHHHHHHHHHh-cCCCHHHHHHHH
Q 036794 565 ------DALPHIIISRCQK--FFFPKMKD--ADIIYTLQW----IASKEGI---EIDKDALKLIASR-SDGSLRDAEMTL 626 (1152)
Q Consensus 565 ------dkL~~aL~SR~qv--I~F~~p~~--~EI~eiL~~----iakkeGl---~Id~dALelLAe~-s~GDLR~Ain~L 626 (1152)
..+.+.|..|+.. +.++++.. +++..++.. .+.+.+. .+++++++.|..+ |+||+|++.|.+
T Consensus 284 ~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i 363 (387)
T 1ny5_A 284 KELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVI 363 (387)
T ss_dssp HHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHH
Confidence 2467778888864 55566543 455544444 3444443 4899999999988 999999999999
Q ss_pred HHHHHhC--CCCCHHHHHHH
Q 036794 627 EQLSLLG--QRISVPLVQEL 644 (1152)
Q Consensus 627 EkLsLlg--~~IT~EdV~el 644 (1152)
++++... ..|+.+++...
T Consensus 364 ~~~~~~~~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 364 ERAVLFSEGKFIDRGELSCL 383 (387)
T ss_dssp HHHHHHCCSSEECHHHHHHH
T ss_pred HHHHHhCCCCcCcHHHCcHh
Confidence 9988763 35888887543
No 75
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.45 E-value=8.6e-14 Score=172.89 Aligned_cols=177 Identities=19% Similarity=0.260 Sum_probs=114.9
Q ss_pred CCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|+++.|.+++++.|.+++.. -..+..+|||||||||||++|+++|.+++..+....
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~---------- 543 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK---------- 543 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECC----------
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEec----------
Confidence 4789999999999999987753 133457999999999999999999999876532110
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhh-
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKVVDR- 550 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLklLEe- 550 (1152)
..++ +..........++++|+.+... .+.||||||+|.+.. ...+.||..|+.
T Consensus 544 ------~~~l--~s~~vGese~~vr~lF~~Ar~~----~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~ 611 (806)
T 3cf2_A 544 ------GPEL--LTMWFGESEANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 611 (806)
T ss_dssp ------HHHH--HTTTCSSCHHHHHHHHHHHHTT----CSEEEECSCGGGCC--------------CHHHHHHHHHHHSS
T ss_pred ------cchh--hccccchHHHHHHHHHHHHHHc----CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCC
Confidence 0000 1111223356789999988643 348999999998842 135788888886
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Q 036794 551 -APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG 617 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G 617 (1152)
...++++|++||.++.|++++++ |+. .|.|+.|+.+++.++++.++++..+. ++-.++.|++.++|
T Consensus 612 ~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g 681 (806)
T 3cf2_A 612 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNG 681 (806)
T ss_dssp CSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC------------
T ss_pred CCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCC
Confidence 34578999999999999999998 887 58999999999999888776554332 11235666666544
No 76
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.43 E-value=3.3e-13 Score=152.96 Aligned_cols=229 Identities=21% Similarity=0.280 Sum_probs=145.9
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHH-Hh---C--CCCcEEEE--EcCCCchHHHHHHHHHHHHcccCC--CCCCCCC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAV-MR---R--KVGLLYVF--YGPHGTGKTSCARIFARALNCQSL--EQPKPCG 479 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL-~~---g--ri~~~yLL--~GPpGTGKTtlARaLAkeL~~~~~--e~~epcg 479 (1152)
++..+|.| ++++|.+..++.|..++ .. + ..+..++| +||+|+|||++++.+++.+..... ....++
T Consensus 14 ~~~~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~- 89 (412)
T 1w5s_A 14 VFDENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQ- 89 (412)
T ss_dssp GGSTTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEE-
T ss_pred hcCCccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeE-
Confidence 44456665 67899999888888877 43 3 45567889 999999999999999998754210 000000
Q ss_pred CCCccccccCCCccceE-----EeC---CCCCCCHHHHHHHH-HHHhhCCCCCCceEEEEeCCCCCCH------HHHHHH
Q 036794 480 FCNSCISHDRGKSRNIK-----EVG---PVGNFDFESILDLL-DNMVTSRPPSQYRIFVFDDCDTLSP------DSWSAI 544 (1152)
Q Consensus 480 ~c~~c~~i~~g~~~dvi-----EId---aas~~~vdeIreLl-e~a~~~P~~a~~kVVIIDEID~Ls~------eaqnaL 544 (1152)
....|.... ....+. .++ +........+...+ +.+.. .+.+.||||||+|.+.. +.+..|
T Consensus 90 ~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~llvlDe~~~l~~~~~~~~~~l~~l 164 (412)
T 1w5s_A 90 AYVNAFNAP--NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYV---ENHYLLVILDEFQSMLSSPRIAAEDLYTL 164 (412)
T ss_dssp EEEEGGGCC--SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHH---HTCEEEEEEESTHHHHSCTTSCHHHHHHH
T ss_pred EEEECCCCC--CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHh---cCCeEEEEEeCHHHHhhccCcchHHHHHH
Confidence 001111100 000000 000 00111223322222 22211 13457999999999753 566677
Q ss_pred HHHHhhCC-----CCEEEEEEcCCCC---cch---HHHHccce-EEEecCCChhHHHHHHHHHHHHcC--CCCCHHHHHH
Q 036794 545 SKVVDRAP-----RRVVFILVSSSLD---ALP---HIIISRCQ-KFFFPKMKDADIIYTLQWIASKEG--IEIDKDALKL 610 (1152)
Q Consensus 545 LklLEepp-----~~VifILaTN~~d---kL~---~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeG--l~Id~dALel 610 (1152)
++.+++.+ .++.||++|+.++ .+. +.+.+++. .+.|++++.+++.+++...+...+ ..++++++..
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~ 244 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLEL 244 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 78887654 6788998987665 233 45556643 499999999999999988776533 3589999999
Q ss_pred HHHhcC------CCHHHHHHHHHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 611 IASRSD------GSLRDAEMTLEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 611 LAe~s~------GDLR~Ain~LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
++..++ |+++.+.++++.+... ...|+.+++..++..
T Consensus 245 i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 245 ISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 292 (412)
T ss_dssp HHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 999999 9999999999876433 235888888766543
No 77
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.42 E-value=3.7e-13 Score=153.93 Aligned_cols=200 Identities=14% Similarity=0.200 Sum_probs=131.4
Q ss_pred CcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cceEEe
Q 036794 421 RDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNIKEV 498 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dviEI 498 (1152)
.+++|++..+..+...+.. ......+||+|++||||+.+|++++........ ....+|..+..... ..++.-
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~------fv~vnc~~~~~~~~~~~lfg~ 202 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGA------FVDLNCASIPQELAESELFGH 202 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSC------EEEEESSSSCTTTHHHHHHEE
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccCC------cEEEEcccCChHHHHHHhcCc
Confidence 4688988877777665543 233345899999999999999999987653311 11223333221110 001000
Q ss_pred CCCCCCCH-HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCCC--
Q 036794 499 GPVGNFDF-ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSSL-- 564 (1152)
Q Consensus 499 daas~~~v-deIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~~-- 564 (1152)
......+. ..-...++. +.+++||||||+.|+...|..|+++|++. +.++++|++||..
T Consensus 203 ~~g~~tga~~~~~g~~~~-------a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~ 275 (368)
T 3dzd_A 203 EKGAFTGALTRKKGKLEL-------ADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLE 275 (368)
T ss_dssp CSCSSSSCCCCEECHHHH-------TTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHH
T ss_pred cccccCCcccccCChHhh-------cCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHH
Confidence 00000000 000012222 35579999999999999999999999972 2478899999853
Q ss_pred -----CcchHHHHccceE--EEecCCCh--hHHHHHHHHHH----HHcC---CCCCHHHHHHHHHh-cCCCHHHHHHHHH
Q 036794 565 -----DALPHIIISRCQK--FFFPKMKD--ADIIYTLQWIA----SKEG---IEIDKDALKLIASR-SDGSLRDAEMTLE 627 (1152)
Q Consensus 565 -----dkL~~aL~SR~qv--I~F~~p~~--~EI~eiL~~ia----kkeG---l~Id~dALelLAe~-s~GDLR~Ain~LE 627 (1152)
..+.+.|.+|+.. |.++|+.+ +++..++..++ ...+ ..++++|++.|..+ |+||+|++.|.++
T Consensus 276 ~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~ 355 (368)
T 3dzd_A 276 EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIE 355 (368)
T ss_dssp HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 2466789999885 56777766 56666555444 3334 45999999999998 8999999999999
Q ss_pred HHHHhC
Q 036794 628 QLSLLG 633 (1152)
Q Consensus 628 kLsLlg 633 (1152)
+++...
T Consensus 356 ~~~~~~ 361 (368)
T 3dzd_A 356 RAVILC 361 (368)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 998763
No 78
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.40 E-value=8.2e-12 Score=137.22 Aligned_cols=204 Identities=20% Similarity=0.227 Sum_probs=130.3
Q ss_pred CCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 417 PRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 417 P~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
..+|+||.|.+.+++.|.+.+.. -..+.++||+||+|||||++++++|..++..
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~-------------- 71 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN-------------- 71 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE--------------
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC--------------
Confidence 35799999999999998876521 2445679999999999999999999986542
Q ss_pred ccccCCCccceEEeCCCCC----C--CHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHH
Q 036794 485 ISHDRGKSRNIKEVGPVGN----F--DFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKV 547 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~----~--~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLkl 547 (1152)
++.++.... . ....++.+++.+... ...++|+||++.+.. ...+.++..
T Consensus 72 ----------~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~----~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~ 137 (274)
T 2x8a_A 72 ----------FISVKGPELLNMYVGESERAVRQVFQRAKNS----APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTE 137 (274)
T ss_dssp ----------EEEEETTTTCSSTTHHHHHHHHHHHHHHHHT----CSEEEEEETCTTTCC---------CTTHHHHHHHH
T ss_pred ----------EEEEEcHHHHhhhhhHHHHHHHHHHHHHHhc----CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHh
Confidence 111211110 1 123456666665322 237999999998632 234566666
Q ss_pred Hhh--CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHc-CCCCCHH-HHHHHHHhc--CC-
Q 036794 548 VDR--APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKE-GIEIDKD-ALKLIASRS--DG- 617 (1152)
Q Consensus 548 LEe--pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakke-Gl~Id~d-ALelLAe~s--~G- 617 (1152)
|+. ....++++++||.++.+++++++ |+. .|.|+.|+..++.++++.+++.. ...++.+ .+..|+..+ .|
T Consensus 138 Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 217 (274)
T 2x8a_A 138 MDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCY 217 (274)
T ss_dssp HHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSC
T ss_pred hhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCc
Confidence 664 33467888889999999999988 777 58899999999999998877542 2223222 356666542 23
Q ss_pred CHHHHHHHHHHHHHhC----------------CCCCHHHHHHHHhcc
Q 036794 618 SLRDAEMTLEQLSLLG----------------QRISVPLVQELVGLI 648 (1152)
Q Consensus 618 DLR~Ain~LEkLsLlg----------------~~IT~EdV~elVg~v 648 (1152)
...++.+++..+++.+ ..|+.+|+.+++..+
T Consensus 218 sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~ 264 (274)
T 2x8a_A 218 TGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKV 264 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHh
Confidence 5555655555544321 136777777766544
No 79
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.40 E-value=4.1e-12 Score=140.53 Aligned_cols=156 Identities=17% Similarity=0.191 Sum_probs=100.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCC
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR 520 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P 520 (1152)
+.+..+|||||||||||++|+++|++++...... .|..+.. .........+++++..+....
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v--------~~~~l~~----------~~~g~~~~~i~~~f~~a~~~~ 95 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMM--------SAGELES----------GNAGEPAKLIRQRYREAAEII 95 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEE--------EHHHHHC----------C---HHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEE--------eHHHhhh----------ccCchhHHHHHHHHHHHHHHH
Confidence 4556899999999999999999999996542111 1111100 000112334566666652111
Q ss_pred CCCCceEEEEeCCCCCCH-------------HHHHHHHHHHhh-------------CCCCEEEEEEcCCCCcchHHHHc-
Q 036794 521 PPSQYRIFVFDDCDTLSP-------------DSWSAISKVVDR-------------APRRVVFILVSSSLDALPHIIIS- 573 (1152)
Q Consensus 521 ~~a~~kVVIIDEID~Ls~-------------eaqnaLLklLEe-------------pp~~VifILaTN~~dkL~~aL~S- 573 (1152)
....+.||||||+|.+.. ..++.|+.+|+. ...+++||++||.++.+++++++
T Consensus 96 ~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~ 175 (293)
T 3t15_A 96 RKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRD 175 (293)
T ss_dssp TTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHH
T ss_pred hcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCC
Confidence 124568999999998754 245889999873 23579999999999999999986
Q ss_pred -cceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Q 036794 574 -RCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG 617 (1152)
Q Consensus 574 -R~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G 617 (1152)
|+..+.+ .|+.+++.++++.++...+ ++.+.+..+...+.|
T Consensus 176 ~R~d~~i~-~P~~~~r~~Il~~~~~~~~--~~~~~l~~~~~~~~~ 217 (293)
T 3t15_A 176 GRMEKFYW-APTREDRIGVCTGIFRTDN--VPAEDVVKIVDNFPG 217 (293)
T ss_dssp HHEEEEEE-CCCHHHHHHHHHHHHGGGC--CCHHHHHHHHHHSCS
T ss_pred CCCceeEe-CcCHHHHHHHHHHhccCCC--CCHHHHHHHhCCCCc
Confidence 6665434 4689999999998887665 456666666665444
No 80
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.37 E-value=2.6e-12 Score=150.31 Aligned_cols=125 Identities=20% Similarity=0.252 Sum_probs=94.2
Q ss_pred ceEEEEeCCCCCCHH------------HHHHHHHHHhh----------CCCCEEEEEEc----CCCCcchHHHHccceE-
Q 036794 525 YRIFVFDDCDTLSPD------------SWSAISKVVDR----------APRRVVFILVS----SSLDALPHIIISRCQK- 577 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~e------------aqnaLLklLEe----------pp~~VifILaT----N~~dkL~~aL~SR~qv- 577 (1152)
..++++||+|++... .|++||++||. ...++.||+++ .++..+.|.|+.|+.+
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~ 330 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIR 330 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEE
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhccccee
Confidence 468999999998532 67899999996 24678899887 2444466779999997
Q ss_pred EEecCCChhHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHh--------cCCCHHHHHHHHHHHHHh----
Q 036794 578 FFFPKMKDADIIYTLQW-----------IASKEGI--EIDKDALKLIASR--------SDGSLRDAEMTLEQLSLL---- 632 (1152)
Q Consensus 578 I~F~~p~~~EI~eiL~~-----------iakkeGl--~Id~dALelLAe~--------s~GDLR~Ain~LEkLsLl---- 632 (1152)
+.|++++.+++..++.. .+..+|+ .++++|+..|++. -..+.|.+.+.|+++...
T Consensus 331 i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~ 410 (444)
T 1g41_A 331 VELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFS 410 (444)
T ss_dssp EECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhh
Confidence 89999999999998831 2222344 5899999999986 247899999998886422
Q ss_pred --C---C--CCCHHHHHHHHhccc
Q 036794 633 --G---Q--RISVPLVQELVGLIS 649 (1152)
Q Consensus 633 --g---~--~IT~EdV~elVg~v~ 649 (1152)
. + .||.+.|.+.++...
T Consensus 411 ~~~~~~~~~~i~~~~v~~~l~~~~ 434 (444)
T 1g41_A 411 ASDMNGQTVNIDAAYVADALGEVV 434 (444)
T ss_dssp GGGCTTCEEEECHHHHHHHHTTTT
T ss_pred ccccCCCeEEEeHHHHHHhcCccc
Confidence 1 1 388999988887544
No 81
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.33 E-value=5.1e-11 Score=141.59 Aligned_cols=211 Identities=12% Similarity=0.108 Sum_probs=130.8
Q ss_pred CcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCC
Q 036794 421 RDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGP 500 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIda 500 (1152)
..|+|++.++..+..++..+. .+||+||||||||++|++||+.+....... +..|.... ..+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~---~VLL~GpPGtGKT~LAraLa~~l~~~~~f~---~~~~~~~t------~~dL~G~-- 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE---SVFLLGPPGIAKSLIARRLKFAFQNARAFE---YLMTRFST------PEEVFGP-- 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC---EEEEECCSSSSHHHHHHHGGGGBSSCCEEE---EECCTTCC------HHHHHCC--
T ss_pred hhhHHHHHHHHHHHHHHhcCC---eeEeecCchHHHHHHHHHHHHHHhhhhHHH---HHHHhcCC------HHHhcCc--
Confidence 468999999999988887763 589999999999999999998774311000 00111000 0000000
Q ss_pred CCCCCHHHH--HHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC----------CCCEEEEEEcCCCC---
Q 036794 501 VGNFDFESI--LDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA----------PRRVVFILVSSSLD--- 565 (1152)
Q Consensus 501 as~~~vdeI--reLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep----------p~~VifILaTN~~d--- 565 (1152)
...... ...+..+...+. ....|+||||++.+++..++.|+.+|++. .+..++|++||.+.
T Consensus 88 ---~~~~~~~~~g~~~~~~~g~l-~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~ 163 (500)
T 3nbx_X 88 ---LSIQALKDEGRYERLTSGYL-PEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEAD 163 (500)
T ss_dssp ---BC----------CBCCTTSG-GGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTT
T ss_pred ---ccHHHHhhchhHHhhhccCC-CcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCcc
Confidence 000000 000100000000 13469999999999999999999999861 11224578887543
Q ss_pred cchHHHHccceE-EEecCCCh-hHHHHHHHHHH-----------------------HHcCCCCCHHHHHHHHHhc-----
Q 036794 566 ALPHIIISRCQK-FFFPKMKD-ADIIYTLQWIA-----------------------SKEGIEIDKDALKLIASRS----- 615 (1152)
Q Consensus 566 kL~~aL~SR~qv-I~F~~p~~-~EI~eiL~~ia-----------------------kkeGl~Id~dALelLAe~s----- 615 (1152)
.+.+++++|+.. +.+++|+. ++...++.... ...++.++++++++++...
T Consensus 164 ~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~ 243 (500)
T 3nbx_X 164 SSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDK 243 (500)
T ss_dssp CTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhc
Confidence 255689999864 88888887 45555554322 2236789999999998775
Q ss_pred -----CCCHHHHHHHHHHH---HHhCC--CCCHHHHHHHHhccch
Q 036794 616 -----DGSLRDAEMTLEQL---SLLGQ--RISVPLVQELVGLISD 650 (1152)
Q Consensus 616 -----~GDLR~Ain~LEkL---sLlg~--~IT~EdV~elVg~v~e 650 (1152)
+.+.|.++..+..+ +.+.+ .|+.+||. ++..+..
T Consensus 244 ~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL~ 287 (500)
T 3nbx_X 244 LPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCLW 287 (500)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTSC
T ss_pred CCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhhh
Confidence 45888877776654 33333 48889888 5554443
No 82
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.31 E-value=2.4e-12 Score=127.67 Aligned_cols=133 Identities=12% Similarity=0.146 Sum_probs=92.5
Q ss_pred cccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCC
Q 036794 422 DLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGP 500 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIda 500 (1152)
+++|++..++.+...+.. ......+||+||+|||||++|+++++...... .|+. ..|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~----~~~v--~~~~~~~~~---------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQ----GEFV--YRELTPDNA---------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTT----SCCE--EEECCTTTS----------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccC----CCEE--EECCCCCcc----------
Confidence 689999999888887765 44455689999999999999999998653221 1111 222221111
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC-------cchHHHHc
Q 036794 501 VGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD-------ALPHIIIS 573 (1152)
Q Consensus 501 as~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d-------kL~~aL~S 573 (1152)
.....+++.+ ..++|||||+|.++.+.+..|+.+|+..+.++.+|++||..- .+.+.|..
T Consensus 66 ------~~~~~~~~~a-------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~ 132 (145)
T 3n70_A 66 ------PQLNDFIALA-------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYY 132 (145)
T ss_dssp ------SCHHHHHHHH-------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHH
T ss_pred ------hhhhcHHHHc-------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHH
Confidence 1233344443 347999999999999999999999988888899999998642 35667777
Q ss_pred cce--EEEecCC
Q 036794 574 RCQ--KFFFPKM 583 (1152)
Q Consensus 574 R~q--vI~F~~p 583 (1152)
|+. .|.++++
T Consensus 133 rl~~~~i~lPpL 144 (145)
T 3n70_A 133 CFAMTQIACLPL 144 (145)
T ss_dssp HHHHHEEECCCC
T ss_pred HhcCCEEeCCCC
Confidence 766 4666554
No 83
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.29 E-value=1.4e-12 Score=157.93 Aligned_cols=211 Identities=17% Similarity=0.174 Sum_probs=133.5
Q ss_pred cCcccCcHHHHHHHHHHHHhCC----------CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC
Q 036794 420 FRDLVGQNLVAQALSNAVMRRK----------VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR 489 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gr----------i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~ 489 (1152)
...++|++.++..|..++..+. ....+||+||||||||++|+++|+.+...... ++....|..+..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~----~~~~~~~~~l~~ 369 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYT----TGKGSTAAGLTA 369 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECC----CTTCSTTTTSEE
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceec----CCCccccccccc
Confidence 3578999999888877766552 11258999999999999999999887543211 111112221111
Q ss_pred CCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-------------CCCEE
Q 036794 490 GKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-------------PRRVV 556 (1152)
Q Consensus 490 g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-------------p~~Vi 556 (1152)
....+. . .+..... ...+.. +.++|+||||++.++.+.+++|+.+|++. +.++.
T Consensus 370 ~~~~~~--~--~g~~~~~--~G~l~~-------A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~ 436 (595)
T 3f9v_A 370 AVVREK--G--TGEYYLE--AGALVL-------ADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAA 436 (595)
T ss_dssp ECSSGG--G--TSSCSEE--ECHHHH-------HSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred eeeecc--c--ccccccc--CCeeEe-------cCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence 000000 0 0000000 001111 24579999999999999999999999962 35677
Q ss_pred EEEEcCCCC-------------cchHHHHccce-EEEecCCChhHHHHHHHHHHHHc-----------------------
Q 036794 557 FILVSSSLD-------------ALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKE----------------------- 599 (1152)
Q Consensus 557 fILaTN~~d-------------kL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakke----------------------- 599 (1152)
||++||... .++++|++||. .+.+..++..+...+++.++...
T Consensus 437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~ 516 (595)
T 3f9v_A 437 VIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARK 516 (595)
T ss_dssp EEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHH
T ss_pred EEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHH
Confidence 899998764 78899999995 45555544433333333333221
Q ss_pred --CCCCCHHHHHHHHHh---------------cCCCHHHHHHHHHHH---HHh--CCCCCHHHHHHHHhc
Q 036794 600 --GIEIDKDALKLIASR---------------SDGSLRDAEMTLEQL---SLL--GQRISVPLVQELVGL 647 (1152)
Q Consensus 600 --Gl~Id~dALelLAe~---------------s~GDLR~Ain~LEkL---sLl--g~~IT~EdV~elVg~ 647 (1152)
.-.+++++.+.|..+ ++++.|.+.+++.-+ +.+ ...|+.+||.+++..
T Consensus 517 ~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l 586 (595)
T 3f9v_A 517 YVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINI 586 (595)
T ss_dssp HHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 225777788888876 578899888888765 333 345999999988754
No 84
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.20 E-value=1.2e-11 Score=122.54 Aligned_cols=129 Identities=17% Similarity=0.199 Sum_probs=87.4
Q ss_pred cccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCC
Q 036794 422 DLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGP 500 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIda 500 (1152)
+++|++..++.+.+.+.. ......+||+||+|||||++|+++++... . ++.++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~------------------------~~~~~~ 59 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-P------------------------WVSPAR 59 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-C------------------------EECCSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-C------------------------eEEech
Confidence 689999998888887765 23444589999999999999999976543 1 111211
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-CCCEEEEEEcCCC-Cc----chHHHHcc
Q 036794 501 VGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-PRRVVFILVSSSL-DA----LPHIIISR 574 (1152)
Q Consensus 501 as~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-p~~VifILaTN~~-dk----L~~aL~SR 574 (1152)
.. ...+....+++. +..++|||||++.++.+.+..|+++|++. +.++.+|++||.. .. +.+.|..|
T Consensus 60 ~~-~~~~~~~~~~~~-------a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~r 131 (143)
T 3co5_A 60 VE-YLIDMPMELLQK-------AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGL 131 (143)
T ss_dssp TT-HHHHCHHHHHHH-------TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHH
T ss_pred hh-CChHhhhhHHHh-------CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHH
Confidence 10 000112334443 23479999999999999999999999984 4678999999843 32 66778888
Q ss_pred ceE--EEecCC
Q 036794 575 CQK--FFFPKM 583 (1152)
Q Consensus 575 ~qv--I~F~~p 583 (1152)
+.. |.++++
T Consensus 132 l~~~~i~lPpL 142 (143)
T 3co5_A 132 FSESVVRIPPL 142 (143)
T ss_dssp SSSEEEEECCC
T ss_pred hcCcEEeCCCC
Confidence 653 555554
No 85
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.11 E-value=1.7e-10 Score=144.32 Aligned_cols=183 Identities=16% Similarity=0.164 Sum_probs=126.6
Q ss_pred hhCCCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCC
Q 036794 414 KYMPRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFC 481 (1152)
Q Consensus 414 KyRP~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c 481 (1152)
.+.+.+|++|+|++.+++.|.+++.. ...+..+||+||+|||||++|++|+..++.....
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~-------- 268 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL-------- 268 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEE--------
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEE--------
Confidence 34566899999999999999988864 2445689999999999999999999886543210
Q ss_pred CccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhh
Q 036794 482 NSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKVVDR 550 (1152)
Q Consensus 482 ~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLklLEe 550 (1152)
..|..+. ..........++.+++.+... ...++||||++.+.. ..++.|+.+++.
T Consensus 269 v~~~~l~----------~~~~g~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g 334 (806)
T 1ypw_A 269 INGPEIM----------SKLAGESESNLRKAFEEAEKN----APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG 334 (806)
T ss_dssp EEHHHHS----------SSSTTHHHHHHHHHHHHHHHH----CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHS
T ss_pred EEchHhh----------hhhhhhHHHHHHHHHHHHHhc----CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhh
Confidence 0111110 000111124466666665432 347999999987743 245678888876
Q ss_pred C--CCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCH
Q 036794 551 A--PRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSL 619 (1152)
Q Consensus 551 p--p~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDL 619 (1152)
. ...+++|++||.++.+++.+.+ |+. .+.|..|+.++..+++..++....+. ++..+..++..+.|..
T Consensus 335 ~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 407 (806)
T 1ypw_A 335 LKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHV 407 (806)
T ss_dssp SCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCC
T ss_pred hcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcc
Confidence 3 3578999999999989888877 775 58899999999999998776654432 2223566777766643
No 86
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.10 E-value=7.8e-13 Score=165.29 Aligned_cols=192 Identities=18% Similarity=0.209 Sum_probs=126.1
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHhC------------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMRR------------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~g------------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
...+|++++|.+.+++.|..++... ..+..+||+||||||||++|+++|..+++......
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~-------- 543 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK-------- 543 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCC--------
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEe--------
Confidence 3457999999999999998877531 23346899999999999999999999876543221
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC--------------HHHHHHHHHHHh
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS--------------PDSWSAISKVVD 549 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls--------------~eaqnaLLklLE 549 (1152)
|..+.. .........++.+++.+.... +.||||||+|.+. ...++.|+..|+
T Consensus 544 ~~~l~~----------~~~g~~~~~i~~~f~~a~~~~----p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld 609 (806)
T 1ypw_A 544 GPELLT----------MWFGESEANVREIFDKARQAA----PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD 609 (806)
T ss_dssp CSSSTT----------CCTTTSSHHHHHHHHHHHHHC----SBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC
T ss_pred chHhhh----------hhcCccHHHHHHHHHHHHhcC----CeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHh
Confidence 111100 000112345777777765432 3699999999863 123567777776
Q ss_pred h--CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHH
Q 036794 550 R--APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAE 623 (1152)
Q Consensus 550 e--pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ai 623 (1152)
. ...+++||++||.++.+++++++ ||. .|.|+.|+.++...+++.+++...+. .+..++.|+..+.| +.+++.
T Consensus 610 ~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sgadi~ 688 (806)
T 1ypw_A 610 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLT 688 (806)
T ss_dssp ------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----CCCCSCSCGGGSSSCCHHHH
T ss_pred cccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCC-cccCHHHHHHhccccCHHHHH
Confidence 5 34578899999999999999998 887 68999999999999988776543321 11123445555443 334444
Q ss_pred HHHHHHH
Q 036794 624 MTLEQLS 630 (1152)
Q Consensus 624 n~LEkLs 630 (1152)
+++..++
T Consensus 689 ~l~~~a~ 695 (806)
T 1ypw_A 689 EICQRAC 695 (806)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4554443
No 87
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.03 E-value=2e-08 Score=110.71 Aligned_cols=196 Identities=13% Similarity=0.106 Sum_probs=123.5
Q ss_pred CcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc-------------
Q 036794 419 TFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI------------- 485 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~------------- 485 (1152)
.-..++|.+..++.|..++..+ ..++|+||+|+|||++++.+++.+++.. ..|..+.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~---~~v~i~G~~G~GKT~Ll~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY---PLTLLLGIRRVGKSSLLRAFLNERPGIL-------IDCRELYAERGHITREELIK 79 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC---SEEEEECCTTSSHHHHHHHHHHHSSEEE-------EEHHHHHHTTTCBCHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC---CeEEEECCCcCCHHHHHHHHHHHcCcEE-------EEeecccccccCCCHHHHHH
Confidence 3467899999999999999875 5799999999999999999998752110 0011000
Q ss_pred ccc--CCCc------cce-EE---eCCC-CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-------HHHHHHH
Q 036794 486 SHD--RGKS------RNI-KE---VGPV-GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-------DSWSAIS 545 (1152)
Q Consensus 486 ~i~--~g~~------~dv-iE---Idaa-s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-------eaqnaLL 545 (1152)
.+. .... ..+ .. .... ....+..+.+.+...... .++.+|||||++.+.. +....|.
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~ 156 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEE---LGEFIVAFDEAQYLRFYGSRGGKELLALFA 156 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHH---HSCEEEEEETGGGGGGBTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhc---cCCEEEEEeCHHHHhccCccchhhHHHHHH
Confidence 000 0000 000 00 0000 012334443333332111 1247999999999764 3445555
Q ss_pred HHHhhCCCCEEEEEEcCCCCcchH---------HHHccc-eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 036794 546 KVVDRAPRRVVFILVSSSLDALPH---------IIISRC-QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRS 615 (1152)
Q Consensus 546 klLEepp~~VifILaTN~~dkL~~---------aL~SR~-qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s 615 (1152)
.+++.. .++.||+++.....+.. .+..|. ..+.+.+++.++..+++...+...|..++++++..++..+
T Consensus 157 ~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~t 235 (350)
T 2qen_A 157 YAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELL 235 (350)
T ss_dssp HHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred HHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 555553 47888888765321111 133343 4799999999999999998888788889999999999999
Q ss_pred CCCHHHHHHHHHH
Q 036794 616 DGSLRDAEMTLEQ 628 (1152)
Q Consensus 616 ~GDLR~Ain~LEk 628 (1152)
+|+...+......
T Consensus 236 gG~P~~l~~~~~~ 248 (350)
T 2qen_A 236 DGIPGWLVVFGVE 248 (350)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999876554443
No 88
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.92 E-value=5.9e-09 Score=105.99 Aligned_cols=121 Identities=19% Similarity=0.143 Sum_probs=79.5
Q ss_pred hhhCCCCcCcccC----cHHHHHHHHHHHHhCCC--CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 413 QKYMPRTFRDLVG----QNLVAQALSNAVMRRKV--GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 413 eKyRP~sFddLVG----Qe~v~q~Lk~aL~~gri--~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
++|++.+|+++++ +..+++.+...+..-.. +..++|+||+|+|||+++++++..+...... .+
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~---~~-------- 70 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI---RG-------- 70 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC---CC--------
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC---eE--------
Confidence 5799999999986 45677777777765332 4579999999999999999999987522100 00
Q ss_pred ccCCCccceEEeCCCCCCCHHHHH-------------HHHHHHhhCCCCCCceEEEEeCCC--CCCHHHHHHHHHHHhhC
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESIL-------------DLLDNMVTSRPPSQYRIFVFDDCD--TLSPDSWSAISKVVDRA 551 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIr-------------eLle~a~~~P~~a~~kVVIIDEID--~Ls~eaqnaLLklLEep 551 (1152)
..+ ...++. .++..+ .+..+|||||++ .+.......|..+++..
T Consensus 71 ---------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~llilDE~~~~~~~~~~~~~l~~ll~~~ 129 (180)
T 3ec2_A 71 ---------YFF------DTKDLIFRLKHLMDEGKDTKFLKTV------LNSPVLVLDDLGSERLSDWQRELISYIITYR 129 (180)
T ss_dssp ---------CEE------EHHHHHHHHHHHHHHTCCSHHHHHH------HTCSEEEEETCSSSCCCHHHHHHHHHHHHHH
T ss_pred ---------EEE------EHHHHHHHHHHHhcCchHHHHHHHh------cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHH
Confidence 001 111111 112222 245799999998 45666777787877663
Q ss_pred C-CCEEEEEEcCCCC
Q 036794 552 P-RRVVFILVSSSLD 565 (1152)
Q Consensus 552 p-~~VifILaTN~~d 565 (1152)
. ....+|++||.+.
T Consensus 130 ~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 130 YNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTTCEEEEECCCCS
T ss_pred HHcCCCEEEEcCCCh
Confidence 2 4577888888654
No 89
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.85 E-value=3.9e-08 Score=108.45 Aligned_cols=198 Identities=16% Similarity=0.140 Sum_probs=118.0
Q ss_pred CcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCC---CCCccccc--------
Q 036794 419 TFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCG---FCNSCISH-------- 487 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg---~c~~c~~i-------- 487 (1152)
....++|.+..++.|.. +.. ..++|+||+|+|||++++.+++.+..........|. .......+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 85 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEI 85 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC----CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHH
Confidence 34678999999999988 654 479999999999999999999886422100000000 00000000
Q ss_pred ------------cCCCccce------EEeCCC--CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH----HHHHH
Q 036794 488 ------------DRGKSRNI------KEVGPV--GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP----DSWSA 543 (1152)
Q Consensus 488 ------------~~g~~~dv------iEIdaa--s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~----eaqna 543 (1152)
.......+ ..++.. ....+.. +++.+..... ++.+|||||++.+.. +....
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~l~~~~~--~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 86 NKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFAN---LLESFEQASK--DNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHH---HHHHHHHTCS--SCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHH---HHHHHHhcCC--CCeEEEEECHHHhhccCchhHHHH
Confidence 00000000 011100 0122333 4433332211 357899999999753 34445
Q ss_pred HHHHHhhCCCCEEEEEEcCCCCcchH---------HHHccc-eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036794 544 ISKVVDRAPRRVVFILVSSSLDALPH---------IIISRC-QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIAS 613 (1152)
Q Consensus 544 LLklLEepp~~VifILaTN~~dkL~~---------aL~SR~-qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe 613 (1152)
|..+++.. .++.||+++.....+.. .+..|. ..+.+.+++.++..+++...+...+...++. ..++.
T Consensus 161 l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--~~i~~ 237 (357)
T 2fna_A 161 LAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--EVVYE 237 (357)
T ss_dssp HHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--HHHHH
T ss_pred HHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--HHHHH
Confidence 55555553 47888888875432221 133454 6899999999999999998877667766654 78889
Q ss_pred hcCCCHHHHHHHHHHH
Q 036794 614 RSDGSLRDAEMTLEQL 629 (1152)
Q Consensus 614 ~s~GDLR~Ain~LEkL 629 (1152)
.++|+...+......+
T Consensus 238 ~t~G~P~~l~~~~~~~ 253 (357)
T 2fna_A 238 KIGGIPGWLTYFGFIY 253 (357)
T ss_dssp HHCSCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHH
Confidence 9999998776555443
No 90
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.70 E-value=1.8e-08 Score=118.28 Aligned_cols=171 Identities=12% Similarity=0.028 Sum_probs=106.7
Q ss_pred ccCcHHHHHHHHHHHHhCC----CCcEEEEEcCCCchHHHHHHHH-HHHHcccCCCCCCCCCCCCccccccCCCccceEE
Q 036794 423 LVGQNLVAQALSNAVMRRK----VGLLYVFYGPHGTGKTSCARIF-ARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKE 497 (1152)
Q Consensus 423 LVGQe~v~q~Lk~aL~~gr----i~~~yLL~GPpGTGKTtlARaL-AkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviE 497 (1152)
|+||+.++..|.-++..|. ....+||.|+||| ||.+|+.+ ++.+..... .++.+..+..+... +.
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~f----t~g~~ss~~gLt~s----~r- 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVY----VDLRRTELTDLTAV----LK- 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEE----EEGGGCCHHHHSEE----EE-
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEE----ecCCCCCccCceEE----EE-
Confidence 8999999888887776652 1124899999999 99999999 765422100 00111111111100 00
Q ss_pred eCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh---------CCCCEEEEEEcCCCC---
Q 036794 498 VGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR---------APRRVVFILVSSSLD--- 565 (1152)
Q Consensus 498 Idaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe---------pp~~VifILaTN~~d--- 565 (1152)
++.+ +... ...+. .+..+++||||++.++...+.+|+..||+ .+.++.||+++|-..
T Consensus 285 -~~tG-~~~~--~G~l~-------LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd 353 (506)
T 3f8t_A 285 -EDRG-WALR--AGAAV-------LADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWP 353 (506)
T ss_dssp -ESSS-EEEE--ECHHH-------HTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--C
T ss_pred -cCCC-cccC--CCeeE-------EcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccC
Confidence 1100 0000 00011 14568999999999999999999999997 356788888888543
Q ss_pred --------cchHHHHccceEEEe---------------cCCChhHHHHHHHHHH-HHcCCCCCHHHHHHHHHh
Q 036794 566 --------ALPHIIISRCQKFFF---------------PKMKDADIIYTLQWIA-SKEGIEIDKDALKLIASR 614 (1152)
Q Consensus 566 --------kL~~aL~SR~qvI~F---------------~~p~~~EI~eiL~~ia-kkeGl~Id~dALelLAe~ 614 (1152)
.|++++++|+..+.. +.++.+++.+++...- ......+++++.++|..+
T Consensus 354 ~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 354 SDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp CSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHH
T ss_pred CCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHH
Confidence 789999999954221 1233445555554332 123677899998888765
No 91
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.69 E-value=4.4e-08 Score=107.77 Aligned_cols=138 Identities=15% Similarity=0.289 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhC-CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHH
Q 036794 429 VAQALSNAVMRR-KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFE 507 (1152)
Q Consensus 429 v~q~Lk~aL~~g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vd 507 (1152)
+...|..++... ....++|||||||||||++|.+||+.+.... +... .. ..+..
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l~G------------~vn~--~~----------~~f~l- 143 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYG------------CVNW--TN----------ENFPF- 143 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCEE------------ECCT--TC----------SSCTT-
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcccc------------eeec--cc----------ccccc-
Confidence 344566666654 3345799999999999999999998743210 0000 00 00100
Q ss_pred HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh--------CC-----CCEEEEEEcCC-C---------
Q 036794 508 SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR--------AP-----RRVVFILVSSS-L--------- 564 (1152)
Q Consensus 508 eIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe--------pp-----~~VifILaTN~-~--------- 564 (1152)
..+ ....+++.||+.+ ..++++.|..+++. .. ..+.||++||. +
T Consensus 144 ------~~~------~~k~i~l~Ee~~~-~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~ 210 (267)
T 1u0j_A 144 ------NDC------VDKMVIWWEEGKM-TAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNST 210 (267)
T ss_dssp ------GGG------SSCSEEEECSCCE-ETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEE
T ss_pred ------ccc------cccEEEEeccccc-hhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCcc
Confidence 000 2335666666654 45677778888872 12 45678888886 2
Q ss_pred -CcchHHHHccceEEEec--------CCChhHHHHHHHHHHHHcCCCCCH
Q 036794 565 -DALPHIIISRCQKFFFP--------KMKDADIIYTLQWIASKEGIEIDK 605 (1152)
Q Consensus 565 -dkL~~aL~SR~qvI~F~--------~p~~~EI~eiL~~iakkeGl~Id~ 605 (1152)
+...+.|.+||..|.|. +++.+++..++.+. +.+++++++
T Consensus 211 s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~w~-~~~~~~~~~ 259 (267)
T 1u0j_A 211 TFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRWA-KDHVVEVEH 259 (267)
T ss_dssp ECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHHHH-HHTCCCCCC
T ss_pred chhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHHHH-HHcCCCCcc
Confidence 24567799999999999 89999999999865 777766543
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.66 E-value=5.6e-08 Score=100.22 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=46.1
Q ss_pred chhhhhCCCCcCcccCcH----HHHHHHHHHHHhCCC---CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 410 NLTQKYMPRTFRDLVGQN----LVAQALSNAVMRRKV---GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe----~v~q~Lk~aL~~gri---~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.+..+|++.+|+++++.+ .+++.+..++..... +..++|+||+|||||++|+++++.+..
T Consensus 14 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 14 FMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp SSCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344577888999999743 466667777766432 257999999999999999999998864
No 93
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.53 E-value=3.9e-07 Score=106.78 Aligned_cols=132 Identities=17% Similarity=0.228 Sum_probs=77.5
Q ss_pred cccccchhhhhCCCCcCccc-CcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 405 NGRHQNLTQKYMPRTFRDLV-GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 405 ~~~~~~l~eKyRP~sFddLV-GQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
+....+|..||+|.+|++|- +|..++..+...+..+.. .+||+|++|||||+++..+++.+.......
T Consensus 8 ~~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~--~~li~G~aGTGKT~ll~~~~~~l~~~~~~~--------- 76 (459)
T 3upu_A 8 HHHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH--HVTINGPAGTGATTLTKFIIEALISTGETG--------- 76 (459)
T ss_dssp -------------CCSSCCCHHHHHHHHHHHHHHHSSSC--EEEEECCTTSCHHHHHHHHHHHHHHTTCCC---------
T ss_pred CCccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCCC--EEEEEeCCCCCHHHHHHHHHHHHHhcCCce---------
Confidence 34467999999999999998 788999999888887653 699999999999999999999887542100
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHH-----------HHHHH------------hhCCCCCCceEEEEeCCCCCCHHH
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILD-----------LLDNM------------VTSRPPSQYRIFVFDDCDTLSPDS 540 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIre-----------Lle~a------------~~~P~~a~~kVVIIDEID~Ls~ea 540 (1152)
+..+.+ .+.....+++ ++... ...+....+.+|||||+++++...
T Consensus 77 -----------il~~a~-T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~ 144 (459)
T 3upu_A 77 -----------IILAAP-THAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKL 144 (459)
T ss_dssp -----------EEEEES-SHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHH
T ss_pred -----------EEEecC-cHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHH
Confidence 111100 0000011111 11000 011222457899999999999998
Q ss_pred HHHHHHHHhhCCCCEEEEEEcC
Q 036794 541 WSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 541 qnaLLklLEepp~~VifILaTN 562 (1152)
+..|++.+. ....||++..
T Consensus 145 ~~~l~~~~~---~~~~~~~vGD 163 (459)
T 3upu_A 145 FKILLSTIP---PWCTIIGIGD 163 (459)
T ss_dssp HHHHHHHSC---TTCEEEEEEC
T ss_pred HHHHHHhcc---CCCEEEEECC
Confidence 888888875 3455555543
No 94
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.46 E-value=1.9e-07 Score=99.20 Aligned_cols=121 Identities=19% Similarity=0.186 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCH
Q 036794 427 NLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF 506 (1152)
Q Consensus 427 e~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~v 506 (1152)
...+..|+.++..-...+++|||||||||||++|.++++.+....... .. ....+.
T Consensus 42 ~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~f-------------an----------s~s~f~- 97 (212)
T 1tue_A 42 ITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISF-------------VN----------STSHFW- 97 (212)
T ss_dssp HHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCC-------------CC----------SSSCGG-
T ss_pred HHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeE-------------Ee----------ccchhh-
Confidence 345677777776422235799999999999999999999985331100 00 000000
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHH-HHHHHHHHhhCC-------------CCEEEEEEcCC---CCcchH
Q 036794 507 ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDS-WSAISKVVDRAP-------------RRVVFILVSSS---LDALPH 569 (1152)
Q Consensus 507 deIreLle~a~~~P~~a~~kVVIIDEID~Ls~ea-qnaLLklLEepp-------------~~VifILaTN~---~dkL~~ 569 (1152)
..+. .+.++++|||++...... ...+..+|+..+ ....+|++||. .+...+
T Consensus 98 -----------l~~l-~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~ 165 (212)
T 1tue_A 98 -----------LEPL-TDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWP 165 (212)
T ss_dssp -----------GGGG-TTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCH
T ss_pred -----------hccc-CCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchh
Confidence 0111 335799999998432121 234555555532 12468888885 234456
Q ss_pred HHHccceEEEecCC
Q 036794 570 IIISRCQKFFFPKM 583 (1152)
Q Consensus 570 aL~SR~qvI~F~~p 583 (1152)
.|.||+..+.|+.+
T Consensus 166 ~L~SRi~~f~F~~~ 179 (212)
T 1tue_A 166 YLESRITVFEFPNA 179 (212)
T ss_dssp HHHTSCEEEECCSC
T ss_pred hhhhhEEEEEcCCC
Confidence 79999999999854
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.41 E-value=8.6e-07 Score=122.10 Aligned_cols=139 Identities=10% Similarity=0.109 Sum_probs=95.7
Q ss_pred HHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHH
Q 036794 434 SNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLL 513 (1152)
Q Consensus 434 k~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLl 513 (1152)
..++..+ +.+||+||||||||++|+.+...... ..+..+.-........+...+
T Consensus 1261 ~~~l~~~---~~vLL~GPpGtGKT~la~~~l~~~~~-----------------------~~~~~infsa~ts~~~~~~~i 1314 (2695)
T 4akg_A 1261 YDLLNSK---RGIILCGPPGSGKTMIMNNALRNSSL-----------------------YDVVGINFSKDTTTEHILSAL 1314 (2695)
T ss_dssp HHHHHHT---CEEEEECSTTSSHHHHHHHHHHSCSS-----------------------CEEEEEECCTTCCHHHHHHHH
T ss_pred HHHHHCC---CeEEEECCCCCCHHHHHHHHHhcCCC-----------------------CceEEEEeecCCCHHHHHHHH
Confidence 3444444 46999999999999999665443210 012233333344556666666
Q ss_pred HHHh----------hCCC-CCCceEEEEeCCCCCCHH------HHHHHHHHHhhCC------------CCEEEEEEcCCC
Q 036794 514 DNMV----------TSRP-PSQYRIFVFDDCDTLSPD------SWSAISKVVDRAP------------RRVVFILVSSSL 564 (1152)
Q Consensus 514 e~a~----------~~P~-~a~~kVVIIDEID~Ls~e------aqnaLLklLEepp------------~~VifILaTN~~ 564 (1152)
+... ..|. .+++.||||||+++...+ ..+.|.+++|... .++.||+|+|.+
T Consensus 1315 ~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp 1394 (2695)
T 4akg_A 1315 HRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPP 1394 (2695)
T ss_dssp HHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCT
T ss_pred HHHhhhccccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCC
Confidence 6531 1222 355679999999886433 5667777777511 358899999987
Q ss_pred C-----cchHHHHccceEEEecCCChhHHHHHHHHHHHH
Q 036794 565 D-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK 598 (1152)
Q Consensus 565 d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk 598 (1152)
. .+++++.+||.++.|+.|+.+++..++..++..
T Consensus 1395 ~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1395 TDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp TSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHH
T ss_pred ccCCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHH
Confidence 3 699999999999999999999999998887754
No 96
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.36 E-value=2.7e-07 Score=92.45 Aligned_cols=118 Identities=12% Similarity=0.143 Sum_probs=72.3
Q ss_pred CcCccc-C-cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceE
Q 036794 419 TFRDLV-G-QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIK 496 (1152)
Q Consensus 419 sFddLV-G-Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dvi 496 (1152)
+|++++ | +..++..|... .+..++|+||+|+|||+++++++..+.... . .+.
T Consensus 15 ~~~~f~~g~n~~~~~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g--------~-------------~~~ 68 (149)
T 2kjq_A 15 SFDKFLGTENAELVYVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEAG--------K-------------NAA 68 (149)
T ss_dssp CCCCCCSCCTHHHHHHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTTT--------C-------------CEE
T ss_pred chhhcCcCccHHHHHHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhcC--------C-------------cEE
Confidence 455544 3 44555555444 345789999999999999999999875310 0 012
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC--CCEEEEEEcCC-CC---cchHH
Q 036794 497 EVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP--RRVVFILVSSS-LD---ALPHI 570 (1152)
Q Consensus 497 EIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp--~~VifILaTN~-~d---kL~~a 570 (1152)
.++....... .+ ..+..+|||||++.+....+..|+.+++... ...++|++++. +. .+ +.
T Consensus 69 ~~~~~~~~~~--------~~-----~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~-~~ 134 (149)
T 2kjq_A 69 YIDAASMPLT--------DA-----AFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIR-ED 134 (149)
T ss_dssp EEETTTSCCC--------GG-----GGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCC-HH
T ss_pred EEcHHHhhHH--------HH-----HhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHcccc-HH
Confidence 2221111110 00 1234799999999998776778888776522 12246667764 33 34 78
Q ss_pred HHccce
Q 036794 571 IISRCQ 576 (1152)
Q Consensus 571 L~SR~q 576 (1152)
|.+|+.
T Consensus 135 L~SRl~ 140 (149)
T 2kjq_A 135 LRTRMA 140 (149)
T ss_dssp HHHHGG
T ss_pred HHHHHh
Confidence 999976
No 97
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.32 E-value=4.9e-07 Score=100.95 Aligned_cols=58 Identities=21% Similarity=0.191 Sum_probs=44.4
Q ss_pred hhhhhCCCCcCcccCc----HHHHHHHHHHHHhCC--CCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 411 LTQKYMPRTFRDLVGQ----NLVAQALSNAVMRRK--VGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 411 l~eKyRP~sFddLVGQ----e~v~q~Lk~aL~~gr--i~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+...|++.+|+++++. ..++..+..++.... ....++|+||+|||||++|+++++++.
T Consensus 114 l~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 114 LPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp SCGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456677899999862 345666667777632 145799999999999999999999876
No 98
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.04 E-value=8.3e-05 Score=102.88 Aligned_cols=168 Identities=20% Similarity=0.236 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHH
Q 036794 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFE 507 (1152)
Q Consensus 428 ~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vd 507 (1152)
....+|..++..+ .+.++.||+|||||++++.+|+.++... +.++-....+..
T Consensus 633 r~~~tl~~Al~~~---~~~~l~GpaGtGKTe~vk~LA~~lg~~~------------------------v~~nc~e~ld~~ 685 (2695)
T 4akg_A 633 IGFATLTDSLHQK---YGGCFFGPAGTGKTETVKAFGQNLGRVV------------------------VVFNCDDSFDYQ 685 (2695)
T ss_dssp HHHHHHHHHHHTT---CEEEEECCTTSCHHHHHHHHHHTTTCCC------------------------EEEETTSSCCHH
T ss_pred HHHHHHHHHHHhC---CCCcccCCCCCCcHHHHHHHHHHhCCcE------------------------EEEECCCCCChh
Confidence 4445566666554 3468999999999999999999988652 222222334556
Q ss_pred HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHH-------HHHhh-------------CCCCEEEEEEcC----C
Q 036794 508 SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAIS-------KVVDR-------------APRRVVFILVSS----S 563 (1152)
Q Consensus 508 eIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLL-------klLEe-------------pp~~VifILaTN----~ 563 (1152)
.+..++..+... +..+++||++.+..+....|. ..+.+ ..+++.++++.| .
T Consensus 686 ~lg~~~~g~~~~-----Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g 760 (2695)
T 4akg_A 686 VLSRLLVGITQI-----GAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNG 760 (2695)
T ss_dssp HHHHHHHHHHHH-----TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSS
T ss_pred HhhHHHHHHHhc-----CCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccC
Confidence 667777665433 368999999999999877663 33322 123444555555 2
Q ss_pred CCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHh-------------cCCCHHHHHHHHHHHH
Q 036794 564 LDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASR-------------SDGSLRDAEMTLEQLS 630 (1152)
Q Consensus 564 ~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~-------------s~GDLR~Ain~LEkLs 630 (1152)
...||+.|+.||..+.+..|+.+.+.+++- ...|....+.....++.. .+-.+|.+...|..+.
T Consensus 761 ~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l---~s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag 837 (2695)
T 4akg_A 761 RSELPENLKKSFREFSMKSPQSGTIAEMIL---QIMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCS 837 (2695)
T ss_dssp SCCCCHHHHTTEEEEECCCCCHHHHHHHHH---HHHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHH
T ss_pred cccccHHHHhheEEEEeeCCCHHHHHHHHH---HhcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHH
Confidence 336999999999999999999887777653 234554444433333221 2347888888776653
No 99
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.93 E-value=7.3e-05 Score=104.18 Aligned_cols=164 Identities=13% Similarity=0.122 Sum_probs=106.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHh-------
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV------- 517 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~------- 517 (1152)
.+||+||+|||||.++..+...+.. ..+..++-...++...+...++...
T Consensus 1306 pvLL~GptGtGKT~li~~~L~~l~~-----------------------~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~ 1362 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLRAFPD-----------------------FEVVSLNFSSATTPELLLKTFDHHCEYKRTPS 1362 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGGGCTT-----------------------EEEEEECCCTTCCHHHHHHHHHHHEEEEECTT
T ss_pred cEEEECCCCCCHHHHHHHHHHhCCC-----------------------CceEEEEeeCCCCHHHHHHHHhhcceEEeccC
Confidence 3899999999999887554332210 1133444444556666666665411
Q ss_pred ----hCCC-CCCceEEEEeCCCCCCHH------HHHHHHHHHhh-----C-------CCCEEEEEEcCCC-----CcchH
Q 036794 518 ----TSRP-PSQYRIFVFDDCDTLSPD------SWSAISKVVDR-----A-------PRRVVFILVSSSL-----DALPH 569 (1152)
Q Consensus 518 ----~~P~-~a~~kVVIIDEID~Ls~e------aqnaLLklLEe-----p-------p~~VifILaTN~~-----dkL~~ 569 (1152)
..|. .++.-||||||+++...+ ..+.|.++|+. + -.++.||+++|.+ ..+++
T Consensus 1363 ~G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~ 1442 (3245)
T 3vkg_A 1363 GETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTH 1442 (3245)
T ss_dssp SCEEEEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCH
T ss_pred CCcccCCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCH
Confidence 1233 256678999999987644 56777888875 1 1467788888765 35899
Q ss_pred HHHccceEEEecCCChhHHHHHHHHHHHHcC-----C-CCCHHHHHHHHH---------------hcCCCHHHHHHHHHH
Q 036794 570 IIISRCQKFFFPKMKDADIIYTLQWIASKEG-----I-EIDKDALKLIAS---------------RSDGSLRDAEMTLEQ 628 (1152)
Q Consensus 570 aL~SR~qvI~F~~p~~~EI~eiL~~iakkeG-----l-~Id~dALelLAe---------------~s~GDLR~Ain~LEk 628 (1152)
.+.+|+.++.++.|+.+++..+...+....- + .+.+..+...++ +.--|+|++...++-
T Consensus 1443 Rf~r~F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qG 1522 (3245)
T 3vkg_A 1443 RFLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRA 1522 (3245)
T ss_dssp HHHTTCCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHH
T ss_pred HHHhhceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHH
Confidence 9999999999999999999888766554311 0 111232332222 123489999988887
Q ss_pred HHH
Q 036794 629 LSL 631 (1152)
Q Consensus 629 LsL 631 (1152)
+..
T Consensus 1523 ll~ 1525 (3245)
T 3vkg_A 1523 LLE 1525 (3245)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 100
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.68 E-value=0.00023 Score=85.05 Aligned_cols=194 Identities=12% Similarity=0.091 Sum_probs=106.7
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHhC-CCCcEEEEEcCCCchHHHHHHHHHHHH---cccCCCCCCCCCCCCccccccCCC
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMRR-KVGLLYVFYGPHGTGKTSCARIFARAL---NCQSLEQPKPCGFCNSCISHDRGK 491 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~g-ri~~~yLL~GPpGTGKTtlARaLAkeL---~~~~~e~~epcg~c~~c~~i~~g~ 491 (1152)
.|.....+||.+..+..|..++... .....++|+||.|+|||++|..++... ...+ +++....+..-....
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f-----~~~v~wv~~~~~~~~ 193 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCF-----PGGVHWVSVGKQDKS 193 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHC-----TTCEEEEEEESCCHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhC-----CCceEEEECCCCchH
Confidence 4566678999999999999998753 234579999999999999999987532 1111 000000000000000
Q ss_pred --ccce----EEeC------CCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEE
Q 036794 492 --SRNI----KEVG------PVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFIL 559 (1152)
Q Consensus 492 --~~dv----iEId------aas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifIL 559 (1152)
...+ ..++ .......+.+...+...... ..++-+||||+++.. .. ++..+..+.+|+
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~LLVLDdv~~~------~~---l~~l~~~~~ilv 262 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR--KHPRSLLILDDVWDS------WV---LKAFDSQCQILL 262 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH--TCTTCEEEEEEECCH------HH---HHTTCSSCEEEE
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHcc--CCCCeEEEEeCCCCH------HH---HHHhcCCCeEEE
Confidence 0000 0000 01112233333333322111 013469999999752 12 233356778888
Q ss_pred EcCCCCcchHHHHccceEEEe---cCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 036794 560 VSSSLDALPHIIISRCQKFFF---PKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL 629 (1152)
Q Consensus 560 aTN~~dkL~~aL~SR~qvI~F---~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkL 629 (1152)
+|.+...... + ....+.+ .+++.++..+++...+... ..-.++.+..|++.++|..-.+.-....+
T Consensus 263 TsR~~~~~~~-~--~~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~a~~l 331 (591)
T 1z6t_A 263 TTRDKSVTDS-V--MGPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVVSLIGALL 331 (591)
T ss_dssp EESCGGGGTT-C--CSCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ECCCcHHHHh-c--CCCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 8766542111 1 1233444 4789999988888776431 11224577889999999887765544433
No 101
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.65 E-value=0.00024 Score=73.10 Aligned_cols=69 Identities=9% Similarity=0.131 Sum_probs=48.3
Q ss_pred CCceEEEEeCCCC---CCHHHHHHHHHHHhhCCCCEEEEEEcC--CCCcchHHHHcc--ceEEEecCCChhHHHHHHH
Q 036794 523 SQYRIFVFDDCDT---LSPDSWSAISKVVDRAPRRVVFILVSS--SLDALPHIIISR--CQKFFFPKMKDADIIYTLQ 593 (1152)
Q Consensus 523 a~~kVVIIDEID~---Ls~eaqnaLLklLEepp~~VifILaTN--~~dkL~~aL~SR--~qvI~F~~p~~~EI~eiL~ 593 (1152)
.+..++|+||++- +.......|.++|++. ...+|+++. ....+...+.+| +.++.|.+.+.+++...|.
T Consensus 98 ~~p~llilDEigp~~~ld~~~~~~l~~~l~~~--~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~ 173 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMHDP--NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL 173 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHHHHHHHHHHHTCT--TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred cCCCEEEEeCCCCcccCCHHHHHHHHHHHhcC--CCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHH
Confidence 3458999999643 4566788999999873 443555553 333466678888 7899998888777665553
No 102
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.60 E-value=0.0005 Score=68.05 Aligned_cols=124 Identities=9% Similarity=0.080 Sum_probs=85.8
Q ss_pred HHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHH
Q 036794 433 LSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDL 512 (1152)
Q Consensus 433 Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreL 512 (1152)
|...++++ ..++|||||+.-.-....+..|.+.+..... ...+++.++. ..++ .++
T Consensus 9 l~~~l~~~-~~pvyll~G~E~~l~~~~~~~i~~~~~~~~~------------------~e~~~~~~~~--~~~~---~~l 64 (140)
T 1jql_B 9 LRAQLNEG-LRAAYLLLGNDPLLLQESQDAVRQVAAAQGF------------------EEHHTFSIDP--NTDW---NAI 64 (140)
T ss_dssp HHHHHHHC-CCSEEEEESSCHHHHHHHHHHHHHHHHHTTC------------------CEEECCCCST--TCCH---HHH
T ss_pred HHHHHhcc-CCceEEEEcCcHHHHHHHHHHHHHHHHHCCC------------------cceeEEEecC--CCCH---HHH
Confidence 33445543 7889999999987788888888776543210 0111222222 2444 456
Q ss_pred HHHHhhCCCCCCceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCC------cchHHHHccceEEEe
Q 036794 513 LDNMVTSRPPSQYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLD------ALPHIIISRCQKFFF 580 (1152)
Q Consensus 513 le~a~~~P~~a~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~d------kL~~aL~SR~qvI~F 580 (1152)
++.+...|+++.+++|+|.+... +..+....|..+++.+++++++|++...++ ++.+++...+..+.|
T Consensus 65 ~~~~~s~slF~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~kld~~~~~~k~~k~l~k~g~~v~~ 139 (140)
T 1jql_B 65 FSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (140)
T ss_dssp HHHHHCCCTTCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEEC
T ss_pred HHHHhcCCCCCCCEEEEEECCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCCcChhHHhhHHHHHHHhCeEEEEe
Confidence 77777889999999999998755 566677889999999999999999886543 466666666666654
No 103
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.51 E-value=0.00011 Score=77.25 Aligned_cols=61 Identities=7% Similarity=0.103 Sum_probs=43.8
Q ss_pred CCceEEEEeCCCCCC--H-HHH--HHHHHHHhhC-CCCEEEEEEcCCCCcchHHHHccceE-EEecCC
Q 036794 523 SQYRIFVFDDCDTLS--P-DSW--SAISKVVDRA-PRRVVFILVSSSLDALPHIIISRCQK-FFFPKM 583 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls--~-eaq--naLLklLEep-p~~VifILaTN~~dkL~~aL~SR~qv-I~F~~p 583 (1152)
+.+.||||||++.+. . +.. ..++..|+.. .....+|++|+.+..+...|+.|+.. +.|.++
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred cCceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 456899999999982 2 111 2456666653 34667889998888999999999884 667663
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.44 E-value=7.5e-05 Score=77.26 Aligned_cols=52 Identities=13% Similarity=0.266 Sum_probs=34.5
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC------CcchHHHHccceE
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL------DALPHIIISRCQK 577 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~------dkL~~aL~SR~qv 577 (1152)
..+.+|||||++.++++....|..+.+. ++.+|+++... -...+.|++++..
T Consensus 75 ~~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~ 132 (184)
T 2orw_A 75 EDTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLADT 132 (184)
T ss_dssp TTEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHCSE
T ss_pred CCCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHhhh
Confidence 3568999999999987777777667765 44455544322 2345567777753
No 105
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.44 E-value=0.0015 Score=83.82 Aligned_cols=194 Identities=12% Similarity=0.067 Sum_probs=106.1
Q ss_pred hCCCCcCcccCcHHHHHHHHHHHHhC-CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCcc
Q 036794 415 YMPRTFRDLVGQNLVAQALSNAVMRR-KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSR 493 (1152)
Q Consensus 415 yRP~sFddLVGQe~v~q~Lk~aL~~g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~ 493 (1152)
--|.....++|.+..++.|.+.+... .....+.|+|+.|+|||++|+.++........ ..+++....+..- ....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~--~~~~~~~~v~~~~--~~~~ 193 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEG--CFSGGVHWVSIGK--QDKS 193 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTT--TSTTCEEEEECCS--CCHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHh--hCCCeEEEEEECC--cCch
Confidence 34566678999999999999998653 33457889999999999999888654211000 0011110000000 0000
Q ss_pred ceE--------EeC------CCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEE
Q 036794 494 NIK--------EVG------PVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFIL 559 (1152)
Q Consensus 494 dvi--------EId------aas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifIL 559 (1152)
... .+. .....+.+.+.+.+...... ..++-+||||+++.. . .++.......+|+
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~LlvlDd~~~~--~-------~~~~~~~~~~ilv 262 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLR--KHPRSLLILDDVWDP--W-------VLKAFDNQCQILL 262 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSS--SSCSCEEEEESCCCH--H-------HHTTTCSSCEEEE
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhc--cCCCEEEEEecCCCH--H-------HHHhhcCCCEEEE
Confidence 000 000 00112233333333332111 123569999999853 1 2333356778888
Q ss_pred EcCCCCcchHHHHccceEEEecC-CChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHH
Q 036794 560 VSSSLDALPHIIISRCQKFFFPK-MKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMT 625 (1152)
Q Consensus 560 aTN~~dkL~~aL~SR~qvI~F~~-p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~ 625 (1152)
+|.+.... ..+......+.+.+ ++.++..+.+...+....-. .++....|++.++|-.-.+...
T Consensus 263 TtR~~~~~-~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~glPLal~~~ 327 (1249)
T 3sfz_A 263 TTRDKSVT-DSVMGPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKGSPLVVSLI 327 (1249)
T ss_dssp EESSTTTT-TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTTCHHHHHHH
T ss_pred EcCCHHHH-HhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCCCHHHHHHH
Confidence 88766422 11122234577775 88888888887766432222 2345677888888866554433
No 106
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.44 E-value=0.0026 Score=89.13 Aligned_cols=170 Identities=17% Similarity=0.155 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHH
Q 036794 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFE 507 (1152)
Q Consensus 428 ~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vd 507 (1152)
....+|..++..... ..+.||+|||||.+++.+|+.++... +.++-....+..
T Consensus 592 rcy~tl~~Al~~~~g---g~~~GPaGtGKTet~k~La~~lgr~~------------------------~vfnC~~~~d~~ 644 (3245)
T 3vkg_A 592 RCYLTLTQALESRMG---GNPFGPAGTGKTETVKALGSQLGRFV------------------------LVFCCDEGFDLQ 644 (3245)
T ss_dssp HHHHHHHHHHHTTCE---EEEECSTTSSHHHHHHHHHHHTTCCE------------------------EEEECSSCCCHH
T ss_pred HHHHHHHHHHHhcCC---CCCCCCCCCCHHHHHHHHHHHhCCeE------------------------EEEeCCCCCCHH
Confidence 455677777766543 46889999999999999999998541 111112234555
Q ss_pred HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh---------------------CCCCEEEEEEcCC---
Q 036794 508 SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR---------------------APRRVVFILVSSS--- 563 (1152)
Q Consensus 508 eIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe---------------------pp~~VifILaTN~--- 563 (1152)
.+..++..+... +...++||++++..+....+...+.. ....+.|+++.|.
T Consensus 645 ~~g~i~~G~~~~-----GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~ 719 (3245)
T 3vkg_A 645 AMSRIFVGLCQC-----GAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYA 719 (3245)
T ss_dssp HHHHHHHHHHHH-----TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGG
T ss_pred HHHHHHhhHhhc-----CcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCcc
Confidence 566666665432 35779999999999887766554431 1124445555552
Q ss_pred -CCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHh-------------cCCCHHHHHHHHHHH
Q 036794 564 -LDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASR-------------SDGSLRDAEMTLEQL 629 (1152)
Q Consensus 564 -~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~-------------s~GDLR~Ain~LEkL 629 (1152)
...||+.|+.+|..+.+..|+.+.+.+++ +-.+|+.-.......+... .+=.||.+.+.|..+
T Consensus 720 gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~---L~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~A 796 (3245)
T 3vkg_A 720 GRSNLPDNLKKLFRSMAMIKPDREMIAQVM---LYSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSA 796 (3245)
T ss_dssp GCCCSCHHHHTTEEEEECCSCCHHHHHHHH---HHTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHH
T ss_pred CcccChHHHHhhcEEEEEeCCCHHHHHHHH---HHHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Confidence 23699999999999999999988877765 3456664323222222211 234689998888776
Q ss_pred HHh
Q 036794 630 SLL 632 (1152)
Q Consensus 630 sLl 632 (1152)
..+
T Consensus 797 G~l 799 (3245)
T 3vkg_A 797 GGI 799 (3245)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 107
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.37 E-value=0.0013 Score=78.62 Aligned_cols=185 Identities=11% Similarity=0.072 Sum_probs=96.5
Q ss_pred cCcHHHHHHHHHHHHhC--CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC------------
Q 036794 424 VGQNLVAQALSNAVMRR--KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR------------ 489 (1152)
Q Consensus 424 VGQe~v~q~Lk~aL~~g--ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~------------ 489 (1152)
+|.+..++.|.+++..+ .....+.|+|+.|+|||++|+.+++.......... .+.+..|..-..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY--DSIVWLKDSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB--SEEEEEECCCCSTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccC--CcEEEEEECCCCCCCHHHHHHHHH
Confidence 49999999999998764 23467899999999999999999862111000000 001111111000
Q ss_pred ---CCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCC-ceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 490 ---GKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ-YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 490 ---g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~-~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
+...+...+......+.+.+...+.... .++ +-+||||+++.... . .+. .. ....+|+||.+..
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L----~~~kr~LlVLDdv~~~~~--~-~~~---~~--~gs~ilvTTR~~~ 276 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNAL----IDRPNTLFVFDDVVQEET--I-RWA---QE--LRLRCLVTTRDVE 276 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH----TTSTTEEEEEEEECCHHH--H-HHH---HH--TTCEEEEEESBGG
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHH----cCCCcEEEEEECCCCchh--h-ccc---cc--CCCEEEEEcCCHH
Confidence 0000000000000111222222222221 133 57899999987321 1 121 11 4667777776544
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGI-EIDKDALKLIASRSDGSLRDAE 623 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl-~Id~dALelLAe~s~GDLR~Ai 623 (1152)
+......-...+.+.+++.++..+++...+..... .-.+++...|++.++|..-.+.
T Consensus 277 -v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~ 334 (549)
T 2a5y_B 277 -ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLM 334 (549)
T ss_dssp -GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred -HHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHH
Confidence 22111112246889999999988888765322111 1113467778888988776654
No 108
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.03 E-value=0.0025 Score=72.06 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
..+||+||||+|||++|..++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 46799999999999999999887
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.00 E-value=0.0011 Score=71.07 Aligned_cols=107 Identities=16% Similarity=0.155 Sum_probs=56.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCC--C-CC---CCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQP--K-PC---GFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNM 516 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~--e-pc---g~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a 516 (1152)
+..+|++||+|+||||++..++..+........ . .. +....+.. .|.......+ .... ++++.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr--lG~~~~~~~~-----~~~~---~i~~~i 81 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR--TGTSLPSVEV-----ESAP---EILNYI 81 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC--CCCSSCCEEE-----SSTH---HHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh--cCCCcccccc-----CCHH---HHHHHH
Confidence 457899999999999999888776643211000 0 00 00000000 0111111111 1122 334433
Q ss_pred hhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 517 VTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 517 ~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
........+.+|+|||++.+..+....+..+.+ . .+.+|++..
T Consensus 82 ~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~-~--gi~Vil~Gl 124 (223)
T 2b8t_A 82 MSNSFNDETKVIGIDEVQFFDDRICEVANILAE-N--GFVVIISGL 124 (223)
T ss_dssp HSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHH-T--TCEEEEECC
T ss_pred HHHhhCCCCCEEEEecCccCcHHHHHHHHHHHh-C--CCeEEEEec
Confidence 322223457899999999998776555544333 2 567777765
No 110
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.98 E-value=0.00094 Score=80.79 Aligned_cols=95 Identities=18% Similarity=0.274 Sum_probs=54.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHH-------HH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLL-------DN 515 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLl-------e~ 515 (1152)
...++|+|+||||||+++..++..+...... +..+.+ .......+.+.+ ..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~---------------------Vl~~Ap-T~~Aa~~L~e~~~~~a~Tih~ 261 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLE---------------------VGLCAP-TGKAARRLGEVTGRTASTVHR 261 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCC---------------------EEEEES-SHHHHHHHHHHHTSCEEEHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCe---------------------EEEecC-cHHHHHHhHhhhcccHHHHHH
Confidence 3578999999999999999999876543110 111111 011111111110 00
Q ss_pred -HhhCC--------CCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 516 -MVTSR--------PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 516 -a~~~P--------~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
+...+ ....+.+|||||+.++....+..|++.+. ....+|++..
T Consensus 262 ll~~~~~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 262 LLGYGPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp HTTEETTEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred HHcCCcchhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 00000 12356899999999999888777776654 4556666553
No 111
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.83 E-value=0.0055 Score=65.44 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.+|++||+|+|||.+|..++..+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 37999999999999998887765
No 112
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.64 E-value=0.021 Score=73.33 Aligned_cols=44 Identities=20% Similarity=0.097 Sum_probs=38.1
Q ss_pred ccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 036794 423 LVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 423 LVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.||.+..+..|.+++........+.|+|+.|+|||++|+.++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 49999999999999987444568999999999999999999853
No 113
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.50 E-value=0.013 Score=63.18 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=23.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|.||+|+||||+|+.||+.++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~ 28 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWP 28 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCe
Confidence 57899999999999999999998754
No 114
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.50 E-value=0.0038 Score=75.89 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=29.2
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchH
Q 036794 524 QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPH 569 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~ 569 (1152)
...+|||||++++.......|++.+ +....+|++.. ++.+++
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l---~~~~~liLvGD-~~QL~~ 303 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDAL---PDHARVIFLGD-RDQLAS 303 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTC---CTTCEEEEEEC-TTSGGG
T ss_pred CCCEEEEechhhCCHHHHHHHHHhC---CCCCEEEEEcc-hhhcCC
Confidence 5679999999999877766776655 45666777654 333544
No 115
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.45 E-value=0.018 Score=62.00 Aligned_cols=164 Identities=13% Similarity=0.167 Sum_probs=82.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCC----CCCCCCCC--ccccccCCCccceEEeCCCCCCCHHHHHHHHHHHh
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQ----PKPCGFCN--SCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV 517 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~----~epcg~c~--~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~ 517 (1152)
..++|.|++|+|||+++-.+|..+....... ..|-+... .+..-........+..... ......+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~-~~~e~~l~~~L~--- 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGM-TLEEMDLDALLK--- 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTE-EEEECCHHHHHH---
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCc-ccccccHHHHHh---
Confidence 4589999999999999999988875332110 01100000 0000000000011111100 000011222222
Q ss_pred hCCCCCCceEEEEeCCCCCCHH------HHHHHHHHHhhCCCCEEEEEEcCC------------------CCcchHHHHc
Q 036794 518 TSRPPSQYRIFVFDDCDTLSPD------SWSAISKVVDRAPRRVVFILVSSS------------------LDALPHIIIS 573 (1152)
Q Consensus 518 ~~P~~a~~kVVIIDEID~Ls~e------aqnaLLklLEepp~~VifILaTN~------------------~dkL~~aL~S 573 (1152)
..+.+|||||+...+.. .+..+...++ ..+-+|.++|- .+.+|..+..
T Consensus 83 -----~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~ 154 (228)
T 2r8r_A 83 -----AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQ 154 (228)
T ss_dssp -----HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHH
T ss_pred -----cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHh
Confidence 12479999999875321 3334433333 34455566551 1347778888
Q ss_pred cceEEEecCCChhHHHHHHHHHHHHcCCC-CCHHHHHHHHHh-cCCCHHHHHH
Q 036794 574 RCQKFFFPKMKDADIIYTLQWIASKEGIE-IDKDALKLIASR-SDGSLRDAEM 624 (1152)
Q Consensus 574 R~qvI~F~~p~~~EI~eiL~~iakkeGl~-Id~dALelLAe~-s~GDLR~Ain 624 (1152)
.+..|.+-.++++++.++|. +|.- ..+.+-..+..+ ..||+-.+..
T Consensus 155 ~a~~v~lvD~~p~~l~~rl~-----~g~vy~~~~~~~a~~~~f~~~nl~~lre 202 (228)
T 2r8r_A 155 EAFDLVLIDLPPRELLERLR-----DGKVYVPEQARAAIDAFFTQTNLTALRE 202 (228)
T ss_dssp TCSEEEEBCCCHHHHHHHHH-----TTCCCCTTCCHHHHHHHCCHHHHHHHHH
T ss_pred hCCeEEEecCCHHHHHHHHH-----CCCccChhHHHHHHHhhhchhhHHHHHH
Confidence 88878887888888777653 4433 233333334444 3456655544
No 116
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.42 E-value=0.0041 Score=65.60 Aligned_cols=123 Identities=12% Similarity=0.107 Sum_probs=66.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCC-----CCCCCCCCccccccCCCccceEEeCCCCCCC---------HHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQ-----PKPCGFCNSCISHDRGKSRNIKEVGPVGNFD---------FESIL 510 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~-----~epcg~c~~c~~i~~g~~~dviEIdaas~~~---------vdeIr 510 (1152)
.+++|+.+|.||||+|-.+|-..-...... ......+.....+..- ...+...+. .+. .....
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L-~v~~~~~g~--gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH-GVEFQVMAT--GFTWETQNREADTAACM 106 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG-TCEEEECCT--TCCCCGGGHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC-CcEEEEccc--ccccCCCCcHHHHHHHH
Confidence 478888899999999999987653322110 0000000000000000 011111111 111 12233
Q ss_pred HHHHHHhhCCCCCCceEEEEeCC------CCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccce
Q 036794 511 DLLDNMVTSRPPSQYRIFVFDDC------DTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576 (1152)
Q Consensus 511 eLle~a~~~P~~a~~kVVIIDEI------D~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~q 576 (1152)
..++.+...-..+.+.+|||||+ +.++. +.++.+|..-|..+-+|++++.+. +.|.....
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~---~ev~~~l~~Rp~~~~vIlTGr~ap---~~l~e~AD 172 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPL---EEVISALNARPGHQTVIITGRGCH---RDILDLAD 172 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSCTTCEEEEECSSCC---HHHHHHCS
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCH---HHHHHHHHhCcCCCEEEEECCCCc---HHHHHhCc
Confidence 44444444444577899999998 34443 458888888889999999998753 44444444
No 117
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.27 E-value=0.025 Score=55.23 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|+||+|+||||+|+.| +.++..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~ 27 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAK 27 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCc
Confidence 5889999999999999999 766544
No 118
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.27 E-value=0.026 Score=57.91 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAk 465 (1152)
+..++|+||+|+|||+++..++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 119
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.22 E-value=0.0065 Score=60.42 Aligned_cols=22 Identities=32% Similarity=0.473 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAk 465 (1152)
..++|.|+||+||||+|+.|++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999998
No 120
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.21 E-value=0.026 Score=58.66 Aligned_cols=71 Identities=18% Similarity=0.213 Sum_probs=43.3
Q ss_pred CCCceEEEEeCCCCC---CHHHHHHHHHHHhhCCCCEEE--EEEcCCC-CcchHHHHcc--ceEEEecCCChhHHHHHHH
Q 036794 522 PSQYRIFVFDDCDTL---SPDSWSAISKVVDRAPRRVVF--ILVSSSL-DALPHIIISR--CQKFFFPKMKDADIIYTLQ 593 (1152)
Q Consensus 522 ~a~~kVVIIDEID~L---s~eaqnaLLklLEepp~~Vif--ILaTN~~-dkL~~aL~SR--~qvI~F~~p~~~EI~eiL~ 593 (1152)
..++.||||||++.+ ....+.+|.++++... .+++ |.++.+. ..+.+.+..+ +.++.+..-..+.+...|-
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~-~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i~ 181 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPG-TIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDIV 181 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSS-CCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCCC-cEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHHH
Confidence 456789999998666 4456778888888642 2332 1222332 2355666554 5678877766666555443
No 121
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.03 E-value=0.019 Score=56.58 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|.|++|+||||+++.|++.+++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~ 28 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYP 28 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 57899999999999999999998754
No 122
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.87 E-value=0.013 Score=78.55 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+|+|||||||||++|++++.+...
T Consensus 1083 ~~~l~~G~~g~GKT~la~~~~~~~~~ 1108 (1706)
T 3cmw_A 1083 RIVEIYGPESSGKTTLTLQVIAAAQR 1108 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCChHHHHHHHHHHhhh
Confidence 35999999999999999999987543
No 123
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.85 E-value=0.035 Score=57.09 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||+|+|||++++.++..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3478999999999999999999665
No 124
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.81 E-value=0.008 Score=81.42 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|+||||||||++|.+++.+..
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34799999999999999999988754
No 125
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.80 E-value=0.022 Score=58.79 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..+.|.||+|+||||+++.|+..+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35799999999999999999998543
No 126
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.77 E-value=0.11 Score=53.54 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|+||+|+||||+|+.|++.++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIP 27 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999987643
No 127
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.72 E-value=0.082 Score=55.79 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=17.0
Q ss_pred cEEEEEcCCCchHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLA 464 (1152)
..+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 368999999999998766554
No 128
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.70 E-value=0.13 Score=62.13 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=50.7
Q ss_pred ceEEEEeCCCCCC----HHHHHHHHHHHhh-CCCCEEEEEEcCCCC--cchHHHHccce-EEEecCCChhHHHHHH
Q 036794 525 YRIFVFDDCDTLS----PDSWSAISKVVDR-APRRVVFILVSSSLD--ALPHIIISRCQ-KFFFPKMKDADIIYTL 592 (1152)
Q Consensus 525 ~kVVIIDEID~Ls----~eaqnaLLklLEe-pp~~VifILaTN~~d--kL~~aL~SR~q-vI~F~~p~~~EI~eiL 592 (1152)
+-+|||||++.+. .+....|.+++.. ....+.+|++|..+. .++..|++.+. +|-|...+..+...+|
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHH
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhc
Confidence 4689999999874 3445566666666 446899999998886 78888888887 5888877777766555
No 129
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.57 E-value=0.044 Score=62.22 Aligned_cols=85 Identities=24% Similarity=0.308 Sum_probs=46.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc------cCCC-ccceEEeCCCCCCCHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH------DRGK-SRNIKEVGPVGNFDFESILDLLDN 515 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i------~~g~-~~dviEIdaas~~~vdeIreLle~ 515 (1152)
+..++|+||||+|||++|..++..+.... ..|.+....... ..+. ...+....+ ...+++.+++..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g----~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~---~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAG----GIAAFIDAEHALDPEYAKKLGVDTDSLLVSQP---DTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECC---SSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCC----CeEEEEECCCCcCHHHHHHcCCCHHHeEEecC---CCHHHHHHHHHH
Confidence 35799999999999999999987653221 111110000000 0111 111222222 245566666655
Q ss_pred HhhCCCCCCceEEEEeCCCCCC
Q 036794 516 MVTSRPPSQYRIFVFDDCDTLS 537 (1152)
Q Consensus 516 a~~~P~~a~~kVVIIDEID~Ls 537 (1152)
+... ....+||||++..+.
T Consensus 134 l~~~---~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 134 LVRS---GALDIIVIDSVAALV 152 (349)
T ss_dssp HHTT---TCCSEEEEECGGGCC
T ss_pred HHhc---CCCCEEEEcChHhhc
Confidence 4322 346899999998876
No 130
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.56 E-value=0.0059 Score=68.95 Aligned_cols=28 Identities=36% Similarity=0.538 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|+||+|+|||++|+.||+.+++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~ 32 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCE 32 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 3478999999999999999999998754
No 131
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.56 E-value=0.081 Score=56.12 Aligned_cols=56 Identities=11% Similarity=0.033 Sum_probs=36.9
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHH
Q 036794 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQ 593 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~ 593 (1152)
++++|+| +.......+.+.+. ..+.+|+++.+++.+...|..|. .-+++++..++.
T Consensus 108 G~illLD----LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~Rl~~rG------~~~~e~i~~rl~ 163 (219)
T 1s96_A 108 GVDVFLD----IDWQGAQQIRQKMP---HARSIFILPPSKIELDRRLRGRG------QDSEEVIAKRMA 163 (219)
T ss_dssp TCEEEEE----CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHHHHHTTS------CSCHHHHHHHHH
T ss_pred CCeEEEE----ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHHHHHHcC------CCCHHHHHHHHH
Confidence 4899999 77777777877775 35667777777666655566665 123455555544
No 132
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.56 E-value=0.025 Score=65.52 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.+..++|+|+||+||||+|+.+++.+++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~ 285 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYV 285 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcE
Confidence 34579999999999999999998876543
No 133
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.52 E-value=0.15 Score=51.41 Aligned_cols=24 Identities=29% Similarity=0.564 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.+.|+|++|+||||+++.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999883
No 134
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.43 E-value=0.01 Score=62.04 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=52.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCC--CCC-CC--CCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHh
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQP--KPC-GF--CNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV 517 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~--epc-g~--c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~ 517 (1152)
+..++++||.|+|||+.+-.++..+.......- .|. .. .........+.......+.. . .++++.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~-----~---~~i~~~~~ 79 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKN-----S---REILKYFE 79 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESS-----S---THHHHHCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCC-----H---HHHHHHHh
Confidence 457899999999999888877776532211100 000 00 00000000011111111111 1 13444332
Q ss_pred hCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 518 TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 518 ~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
..+.+|+|||++.++++....|..+.+. ++.+|++.-
T Consensus 80 -----~~~dvViIDEaqfl~~~~v~~l~~l~~~---~~~Vi~~Gl 116 (191)
T 1xx6_A 80 -----EDTEVIAIDEVQFFDDEIVEIVNKIAES---GRRVICAGL 116 (191)
T ss_dssp -----TTCSEEEECSGGGSCTHHHHHHHHHHHT---TCEEEEEEC
T ss_pred -----ccCCEEEEECCCCCCHHHHHHHHHHHhC---CCEEEEEec
Confidence 2468999999999987765554444332 556666654
No 135
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.35 E-value=0.067 Score=62.68 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.||+|+||||++..||..+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999988753
No 136
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.33 E-value=0.019 Score=58.55 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.+++.+|+|+|||.++-.++..+
T Consensus 50 ~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 50 NIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999988776653
No 137
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.27 E-value=0.13 Score=56.99 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|.||+|+||||++..||..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999998875
No 138
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.25 E-value=0.084 Score=60.30 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|+||||+|||+++..++..+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999998764
No 139
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.20 E-value=0.089 Score=61.82 Aligned_cols=152 Identities=11% Similarity=0.113 Sum_probs=73.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCC-CCccccc------cCCCccceEEeCCCCCCC-HHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF-CNSCISH------DRGKSRNIKEVGPVGNFD-FESILDLLD 514 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~-c~~c~~i------~~g~~~dviEIdaas~~~-vdeIreLle 514 (1152)
+..++|.|++|+||||++..||..+...... .... |...... ..+...++-........+ .+-+.+.+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~k---Vllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYK---VGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVD 176 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCC---EEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCe---EEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHH
Confidence 5689999999999999999999887543211 0000 0000000 000011111111111122 222344555
Q ss_pred HHhhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhC-CCCEEEEEEcCCCCc---chHHHHccc--eEEEecCCChh
Q 036794 515 NMVTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDRA-PRRVVFILVSSSLDA---LPHIIISRC--QKFFFPKMKDA 586 (1152)
Q Consensus 515 ~a~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEep-p~~VifILaTN~~dk---L~~aL~SR~--qvI~F~~p~~~ 586 (1152)
.+.. ..+.+||||.+..+.. .....|.++..-. +..++||+-+..-.. ....+...+ ..+-+.+++..
T Consensus 177 ~a~~----~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 177 YFKS----KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGS 252 (443)
T ss_dssp HHHH----TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSCTTEEEEEECCSSC
T ss_pred HHHh----CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhCCCeEEEEECCCCc
Confidence 5432 2368999999988753 3344444443332 455666665543221 122233222 23667777765
Q ss_pred HHHHHHHHHHHHcCC
Q 036794 587 DIIYTLQWIASKEGI 601 (1152)
Q Consensus 587 EI~eiL~~iakkeGl 601 (1152)
.....+..+....++
T Consensus 253 ~~gG~~ls~~~~~g~ 267 (443)
T 3dm5_A 253 AKGGGALSAVAATGA 267 (443)
T ss_dssp SSHHHHHHHHHTTCC
T ss_pred ccccHHHHHHHHHCC
Confidence 443333333333333
No 140
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.15 E-value=0.086 Score=60.13 Aligned_cols=125 Identities=14% Similarity=0.165 Sum_probs=63.9
Q ss_pred CCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC----CCCCCCCCCccccccCCCcc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE----QPKPCGFCNSCISHDRGKSR 493 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e----~~epcg~c~~c~~i~~g~~~ 493 (1152)
.+++++.-.+ + |.+.+... ...++|.||+|+||||+.++++..+...... ...|..+... ......
T Consensus 104 ~~l~~lg~~~-~---l~~l~~~~--~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~----~~~~~v 173 (356)
T 3jvv_A 104 LTMEELGMGE-V---FKRVSDVP--RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHE----SKKCLV 173 (356)
T ss_dssp CCTTTTTCCH-H---HHHHHHCS--SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC----CSSSEE
T ss_pred CCHHHcCChH-H---HHHHHhCC--CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhh----ccccce
Confidence 3566664433 3 33333322 2369999999999999999999987643110 0011111000 000000
Q ss_pred ceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 494 NIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 494 dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
...++.. .... +.+.+..+. ..++.+|++||+- ..+....+++..+. ... +|+++...+
T Consensus 174 ~q~~~~~-~~~~---~~~~La~aL----~~~PdvillDEp~--d~e~~~~~~~~~~~--G~~-vl~t~H~~~ 232 (356)
T 3jvv_A 174 NQREVHR-DTLG---FSEALRSAL----REDPDIILVGEMR--DLETIRLALTAAET--GHL-VFGTLHTTS 232 (356)
T ss_dssp EEEEBTT-TBSC---HHHHHHHHT----TSCCSEEEESCCC--SHHHHHHHHHHHHT--TCE-EEEEESCSS
T ss_pred eeeeecc-ccCC---HHHHHHHHh----hhCcCEEecCCCC--CHHHHHHHHHHHhc--CCE-EEEEEccCh
Confidence 0112211 1122 223333332 2455899999996 46666666666554 333 566666555
No 141
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.14 E-value=0.011 Score=58.95 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|+|++|+||||+|+.|++.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 346899999999999999999998764
No 142
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.13 E-value=0.066 Score=61.08 Aligned_cols=85 Identities=25% Similarity=0.368 Sum_probs=46.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc------cCCC-ccceEEeCCCCCCCHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH------DRGK-SRNIKEVGPVGNFDFESILDLLDN 515 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i------~~g~-~~dviEIdaas~~~vdeIreLle~ 515 (1152)
+..++|+|+||+|||++|..++..+.... .+|.+....... ..+. ...+...++ ...+++.+++..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g----~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~---~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREG----KTCAFIDAEHALDPIYARKLGVDIDNLLCSQP---DTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECC---SSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC----CeEEEEeCCCCccHHHHHHcCCChhheeeeCC---CCHHHHHHHHHH
Confidence 35799999999999999999987753221 111111000000 0011 111222222 234566666655
Q ss_pred HhhCCCCCCceEEEEeCCCCCC
Q 036794 516 MVTSRPPSQYRIFVFDDCDTLS 537 (1152)
Q Consensus 516 a~~~P~~a~~kVVIIDEID~Ls 537 (1152)
+... ....+||||.+..+.
T Consensus 136 l~~~---~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 136 LARS---GAVDVIVVDSVAALT 154 (356)
T ss_dssp HHHH---TCCSEEEEECGGGCC
T ss_pred HHhc---cCCCEEEEcCHHHhc
Confidence 4322 345899999998875
No 143
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.06 E-value=0.13 Score=53.12 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=22.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|+||+|+||||+|+.|++.++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIP 27 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999988654
No 144
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.06 E-value=0.06 Score=56.11 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||+|+|||++++.++..+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3579999999999999999999853
No 145
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.05 E-value=0.04 Score=60.13 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.+..++|.||+|+|||++++.|+..+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3457899999999999999999987643
No 146
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.98 E-value=0.11 Score=55.97 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=22.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..++|+|+||+||||+|+.|++.+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999854
No 147
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.98 E-value=0.029 Score=59.10 Aligned_cols=42 Identities=29% Similarity=0.301 Sum_probs=29.5
Q ss_pred hhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 036794 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 414 KyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
..+|++|. +..++.. +..|. .+.|.||.|+||||++++++..
T Consensus 4 ~i~pk~~g----~~~~l~~----i~~Ge---~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 4 VIRPKTLG----QKHYVDA----IDTNT---IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CCCCCSHH----HHHHHHH----HHHCS---EEEEECCTTSSTTHHHHHHHHH
T ss_pred ccccCCHh----HHHHHHh----ccCCC---EEEEECCCCCCHHHHHHHHhcC
Confidence 35677763 3333332 34443 5789999999999999999987
No 148
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.96 E-value=0.08 Score=57.57 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..++|.|+||+||||+|+.|++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999999863
No 149
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.94 E-value=0.21 Score=51.29 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=55.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCC-CCCCCccccccCCCccceEEeCCCCCCC-------HHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKP-CGFCNSCISHDRGKSRNIKEVGPVGNFD-------FESILDLLDNM 516 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~ep-cg~c~~c~~i~~g~~~dviEIdaas~~~-------vdeIreLle~a 516 (1152)
.++|.|++|+|||+++..|...-.... ....+ +........+.......+..+|.++... .+....++...
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 109 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQKRLAF-ASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSY 109 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCSSSSC-TTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCccee-ecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHH
Confidence 588999999999999998854310000 01111 1111111111111223355555544222 23334444443
Q ss_pred hhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 517 VTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 517 ~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
.........-++++|--+.+.. ....+++.+...... +|++.|..|.
T Consensus 110 ~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~~~~p--~i~v~nK~Dl 156 (223)
T 4dhe_A 110 LQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAPTGKP--IHSLLTKCDK 156 (223)
T ss_dssp HHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGGGCCC--EEEEEECGGG
T ss_pred HhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHhcCCC--EEEEEecccc
Confidence 2221112235667776555553 334566666653333 4455555553
No 150
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=94.85 E-value=0.04 Score=66.05 Aligned_cols=42 Identities=24% Similarity=0.197 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
|..++..+.+.+..++ ..+|+++|+|+|||.++-.++..+..
T Consensus 183 Q~~ai~~~~~~~~~~~--~~~ll~~~TGsGKT~~~~~~~~~l~~ 224 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGK--KRSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp HHHHHHHHHHHHHTTC--SEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC--CceEEEecCCCChHHHHHHHHHHHHh
Confidence 5667777777776654 34789999999999998877776643
No 151
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.82 E-value=0.018 Score=58.03 Aligned_cols=28 Identities=25% Similarity=0.183 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
...++|+|++|+||||+|+.|++.++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~ 32 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRI 32 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3468999999999999999999998754
No 152
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.81 E-value=0.016 Score=61.86 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=25.5
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 524 QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
.+.+|+|||+..++.+..+.| ..|.+ .++.||++.-
T Consensus 101 ~~dvViIDEaQF~~~~~V~~l-~~l~~--~~~~Vi~~Gl 136 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEVV-QVLAN--RGYRVIVAGL 136 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHHH-HHHHH--TTCEEEEEEC
T ss_pred CCCEEEEECcccCCHHHHHHH-HHHhh--CCCEEEEEec
Confidence 468999999999988776444 44333 2667777764
No 153
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.75 E-value=0.16 Score=58.07 Aligned_cols=85 Identities=22% Similarity=0.355 Sum_probs=48.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc------cCCCc-cceEEeCCCCCCCHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH------DRGKS-RNIKEVGPVGNFDFESILDLLDN 515 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i------~~g~~-~dviEIdaas~~~vdeIreLle~ 515 (1152)
+..++|+||||+|||++|..++..+.... .+|.+....... ..+.. ..++...+ ...+++.++++.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g----~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~---~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAG----GTCAFIDAEHALDPVYARALGVNTDELLVSQP---DNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECC---SSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCC----CeEEEEECCCChhHHHHHHcCCCHHHceeecC---CcHHHHHHHHHH
Confidence 35789999999999999999987653211 111111110000 00111 11222222 245666666665
Q ss_pred HhhCCCCCCceEEEEeCCCCCC
Q 036794 516 MVTSRPPSQYRIFVFDDCDTLS 537 (1152)
Q Consensus 516 a~~~P~~a~~kVVIIDEID~Ls 537 (1152)
+... ....+||||.+..+.
T Consensus 147 l~~~---~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 147 LVRS---GAIDVVVVDSVAALT 165 (366)
T ss_dssp HHTT---TCCSEEEEECTTTCC
T ss_pred HHhc---CCCCEEEEeChHHhc
Confidence 5432 346899999999875
No 154
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.63 E-value=0.041 Score=56.93 Aligned_cols=42 Identities=17% Similarity=0.434 Sum_probs=25.6
Q ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 523 SQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN~~ 564 (1152)
....+|||||+|.+.... ...+..++...+....+|+.|..+
T Consensus 154 ~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~ 196 (224)
T 1qde_A 154 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM 196 (224)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSC
T ss_pred hhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeec
Confidence 556899999999875432 334555555545555555544433
No 155
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.51 E-value=0.06 Score=56.68 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCchHH-HHHHHHHHHHcc
Q 036794 442 VGLLYVFYGPHGTGKT-SCARIFARALNC 469 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKT-tlARaLAkeL~~ 469 (1152)
.+..+++|||.|+||| .+.+++.+....
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~ 47 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA 47 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 3457999999999999 888998887543
No 156
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.46 E-value=0.34 Score=49.93 Aligned_cols=43 Identities=19% Similarity=0.482 Sum_probs=26.7
Q ss_pred CCCceEEEEeCCCCCCH--HHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 522 PSQYRIFVFDDCDTLSP--DSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~--eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
....++|||||+|.+.. .....+..++...+.+..+|+.|..+
T Consensus 156 ~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 200 (220)
T 1t6n_A 156 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 200 (220)
T ss_dssp CTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCC
T ss_pred cccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeec
Confidence 35668999999998743 33445556666555455555554433
No 157
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.44 E-value=0.24 Score=50.28 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=26.4
Q ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN~~d 565 (1152)
...++|||||+|.+.... ...+..++...+.+..+|+.|..+.
T Consensus 143 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 186 (207)
T 2gxq_A 143 SRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLP 186 (207)
T ss_dssp TTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCC
T ss_pred hhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecC
Confidence 567899999999875432 3345555555555555555554443
No 158
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.41 E-value=0.15 Score=52.32 Aligned_cols=113 Identities=13% Similarity=0.192 Sum_probs=56.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHH-HHHHHHHHHhhCCCC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFE-SILDLLDNMVTSRPP 522 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vd-eIreLle~a~~~P~~ 522 (1152)
..++|.|++|+|||+++..|.............|.... .+ ....+..+|.++...+. .+...+.... ..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~----~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~~---~~ 82 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA----DY---DGSGVTLVDFPGHVKLRYKLSDYLKTRA---KF 82 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET----TG---GGSSCEEEECCCCGGGTHHHHHHHHHHG---GG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE----Ee---eCceEEEEECCCcHHHHHHHHHHHHhcc---cc
Confidence 45899999999999999999765422111011111000 00 12234444544443322 2222222211 01
Q ss_pred CCceEEEEeCC-CCC-CHHHHHHHHHHHhh----CCCCEEEEEEcCCCCc
Q 036794 523 SQYRIFVFDDC-DTL-SPDSWSAISKVVDR----APRRVVFILVSSSLDA 566 (1152)
Q Consensus 523 a~~kVVIIDEI-D~L-s~eaqnaLLklLEe----pp~~VifILaTN~~dk 566 (1152)
+..-++++|.. +.- .......+..++.. .+.++.+|++.|..|.
T Consensus 83 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 83 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 23357778876 221 23344455555543 3456667777787763
No 159
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.28 E-value=0.27 Score=49.75 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=55.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc--cccCCCccceEEeCCCCCCCHHHH----HHHHHHHhh
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI--SHDRGKSRNIKEVGPVGNFDFESI----LDLLDNMVT 518 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~--~i~~g~~~dviEIdaas~~~vdeI----reLle~a~~ 518 (1152)
-++|.|++|+|||++++.+........ . .......... .+..+....+...|.++...+..+ ...+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~--- 95 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSPNE-T--LFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG--- 95 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCGGG-G--GGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCcc-e--eeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc---
Confidence 589999999999999986654321110 0 0001110001 111122233444454443222211 122222
Q ss_pred CCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh---CCCCEEEEEEcCCCCcc
Q 036794 519 SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR---APRRVVFILVSSSLDAL 567 (1152)
Q Consensus 519 ~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe---pp~~VifILaTN~~dkL 567 (1152)
+..-|+++|=-+. ..+....+..++.+ ...++.+|++.|..|.+
T Consensus 96 ----~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 96 ----TGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp ----CSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred ----CCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence 3445677775554 44555555555554 24567777888877743
No 160
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.27 E-value=0.028 Score=56.60 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.|++|+||||+++.|++.++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 457899999999999999999998864
No 161
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.14 E-value=0.028 Score=56.50 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=23.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|+|++|+||||+++.|++.++..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~ 38 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLK 38 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCe
Confidence 358999999999999999999998644
No 162
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.12 E-value=0.029 Score=56.24 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=23.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..++|+|++|+||||+++.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 163
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.10 E-value=0.026 Score=56.54 Aligned_cols=26 Identities=38% Similarity=0.554 Sum_probs=23.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|.|++|+||||+|+.||+.++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~ 31 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLV 31 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 37899999999999999999998754
No 164
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.07 E-value=0.03 Score=57.61 Aligned_cols=27 Identities=37% Similarity=0.550 Sum_probs=24.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|.||+|+||||+++.|++.+++.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~ 52 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVP 52 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 468999999999999999999998654
No 165
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.04 E-value=0.026 Score=55.99 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=23.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..++|+||+|+||||+++.|+..++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35889999999999999999998764
No 166
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.00 E-value=0.11 Score=57.92 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.||+|+||||++..||..+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 357999999999999999999988753
No 167
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=94.00 E-value=0.037 Score=58.36 Aligned_cols=42 Identities=17% Similarity=0.377 Sum_probs=26.1
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 523 SQYRIFVFDDCDTLSPD-SWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~e-aqnaLLklLEepp~~VifILaTN~~ 564 (1152)
...++|||||+|.+... ....+..++...+....+|+.|..+
T Consensus 172 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~ 214 (237)
T 3bor_A 172 KWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATM 214 (237)
T ss_dssp TTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSC
T ss_pred ccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEec
Confidence 45689999999976443 2334555555555555666555443
No 168
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.99 E-value=0.033 Score=55.33 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=24.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|+|++|+||||+++.|++.++..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~ 34 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLE 34 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 68999999999999999999998864
No 169
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.94 E-value=0.029 Score=56.19 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.++|.|++|+||||+++.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999987
No 170
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.92 E-value=0.2 Score=52.00 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.++|+||+|+||||+++.|.+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999998764
No 171
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.91 E-value=0.04 Score=56.48 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..+..++|+|++|+||||+|+.|++.++..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~ 47 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIP 47 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 334478999999999999999999988754
No 172
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.90 E-value=0.035 Score=55.72 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|+|++|+||||+|+.|++.++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~ 30 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYT 30 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3468999999999999999999988643
No 173
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.90 E-value=0.23 Score=56.20 Aligned_cols=88 Identities=15% Similarity=0.214 Sum_probs=45.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc------cccCCCc-cceEEeCCCCCCCHHHH-HHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI------SHDRGKS-RNIKEVGPVGNFDFESI-LDLLDN 515 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~------~i~~g~~-~dviEIdaas~~~vdeI-reLle~ 515 (1152)
..++|+||||+|||+++..++..+..... ...|.|...-. .-..|.. ..++...+ ...+++ .++++.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~--g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~---~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYP--DAVCLFYDSEFGITPAYLRSMGVDPERVIHTPV---QSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCT--TCEEEEEESSCCCCHHHHHHTTCCGGGEEEEEC---SBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCC--CceEEEEeccchhhHHHHHHhCCCHHHeEEEcC---CCHHHHHHHHHHH
Confidence 36899999999999998887766532100 01111100000 0001111 12222211 345565 555555
Q ss_pred HhhCCCCCCceEEEEeCCCCCC
Q 036794 516 MVTSRPPSQYRIFVFDDCDTLS 537 (1152)
Q Consensus 516 a~~~P~~a~~kVVIIDEID~Ls 537 (1152)
+... ......+||||-+..|.
T Consensus 104 l~~i-~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 104 LDAI-ERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHTC-CTTCCEEEEEECSTTCB
T ss_pred HHHh-hccCceEEEEecccccc
Confidence 4211 22467999999999884
No 174
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.90 E-value=0.15 Score=57.45 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=25.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..+..++|.||+|+|||++|..+|+.+++.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~ 37 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVE 37 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEE
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCc
Confidence 345678999999999999999999998754
No 175
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.86 E-value=0.033 Score=56.06 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=23.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|+|++|+||||+|+.|++.++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVG 29 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 48899999999999999999998754
No 176
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.67 E-value=0.039 Score=55.45 Aligned_cols=27 Identities=33% Similarity=0.557 Sum_probs=23.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|+|++|+||||+++.|++.++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~ 31 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFK 31 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 368999999999999999999988654
No 177
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.65 E-value=0.21 Score=56.63 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||+|+|||++++.++..+
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999875
No 178
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.58 E-value=0.038 Score=54.72 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=23.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|+|++|+||||+|+.|++.++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYE 29 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999998754
No 179
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.57 E-value=0.17 Score=58.67 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
+..++|+||+|+|||++++.|+-.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Confidence 347999999999999999987644
No 180
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.53 E-value=0.069 Score=54.89 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=26.1
Q ss_pred hCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 439 RRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 439 ~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
....+..+.|.||+|+||||+++.|+..+.
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345566899999999999999999999986
No 181
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.52 E-value=0.041 Score=59.10 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..+.|.||.|+||||++++|+..+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999998764
No 182
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.48 E-value=0.047 Score=55.09 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=24.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|.|++|+||||+|+.|++.++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~ 36 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYT 36 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 468999999999999999999988653
No 183
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.47 E-value=0.18 Score=56.89 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=23.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|.||+|+|||++|..||+.+++.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~ 30 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGE 30 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEE
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccc
Confidence 468899999999999999999988754
No 184
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.46 E-value=0.045 Score=55.73 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=23.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..++|.|++|+||||+|+.|++.++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 46899999999999999999999875
No 185
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.46 E-value=0.029 Score=60.21 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+..++|.|+||+||||+|+.|++.++
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3345799999999999999999999875
No 186
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.45 E-value=0.044 Score=55.41 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=24.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|+|++|+||||+|+.|++.++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~ 39 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFT 39 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 468999999999999999999998744
No 187
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.45 E-value=0.34 Score=49.21 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=25.4
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 523 SQYRIFVFDDCDTLSPD-SWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~e-aqnaLLklLEepp~~VifILaTN~~ 564 (1152)
....+|||||+|.+... ....+..++...+.+..+|+.|..+
T Consensus 145 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 187 (206)
T 1vec_A 145 DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATF 187 (206)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred ccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeC
Confidence 56689999999976543 3345555555555444455544433
No 188
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.43 E-value=0.041 Score=56.40 Aligned_cols=28 Identities=29% Similarity=0.301 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|+|++|+||||+|+.|++.++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~ 45 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYP 45 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCE
Confidence 3468999999999999999999998643
No 189
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.42 E-value=0.15 Score=59.47 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.+..++|.|+||+|||+++..++..+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999988764
No 190
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.42 E-value=0.032 Score=55.77 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|+|++|+||||+|+.|++.++..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~ 32 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGS 32 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 468999999999999999999988754
No 191
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.39 E-value=0.05 Score=54.43 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|+|++|+||||+|+.|++.++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 33 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWV 33 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4578999999999999999999987643
No 192
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.36 E-value=0.25 Score=53.75 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.+..++|.||+|+||||++++++..+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 3457899999999999999999998754
No 193
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.31 E-value=0.052 Score=56.48 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|.|++|+||||+|+.|++.++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~ 31 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAA 31 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCce
Confidence 3468999999999999999999998754
No 194
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.22 E-value=0.085 Score=62.00 Aligned_cols=24 Identities=8% Similarity=0.182 Sum_probs=20.6
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHH
Q 036794 525 YRIFVFDDCDTLSPDSWSAISKVV 548 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~eaqnaLLklL 548 (1152)
..+|||||+.+++...+..|+..+
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~ 258 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMS 258 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHT
T ss_pred CCEEEEeCcccCCHHHHHHHHHhC
Confidence 689999999999998888777665
No 195
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.19 E-value=0.092 Score=56.09 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=25.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..+..++|+||+|+||||+|+.|++.++..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~ 56 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYC 56 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 345678999999999999999999987643
No 196
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.17 E-value=0.036 Score=61.03 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.+..++|+||+|+||||+|+.|++.+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999998763
No 197
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.14 E-value=0.056 Score=53.36 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|+|++|+||||+|+.|++.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~ 27 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIP 27 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 37899999999999999999988754
No 198
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.10 E-value=0.055 Score=54.99 Aligned_cols=27 Identities=37% Similarity=0.429 Sum_probs=23.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH-Hccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA-LNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke-L~~~ 470 (1152)
..++|+|++|+||||+++.|++. +++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~ 38 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQ 38 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 46899999999999999999998 5543
No 199
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=93.04 E-value=0.38 Score=52.97 Aligned_cols=41 Identities=20% Similarity=0.427 Sum_probs=25.5
Q ss_pred CCceEEEEeCCCCCCH--HHHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 523 SQYRIFVFDDCDTLSP--DSWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~--eaqnaLLklLEepp~~VifILaTN~ 563 (1152)
..-++|||||+|.+.. .....+..++...+.++.+|+.+..
T Consensus 234 ~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT 276 (300)
T 3fmo_B 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSAT 276 (300)
T ss_dssp GGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESC
T ss_pred hhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEecc
Confidence 4568999999998764 2334455555555555555555443
No 200
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.02 E-value=0.058 Score=55.20 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|+|++|+||||+++.|++.++..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4568999999999999999999998754
No 201
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.01 E-value=0.27 Score=47.52 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999998754
No 202
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.00 E-value=0.68 Score=44.26 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988753
No 203
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.95 E-value=0.36 Score=52.16 Aligned_cols=37 Identities=5% Similarity=0.058 Sum_probs=28.4
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~ 563 (1152)
..+.+|+|||+..+.. ...|.+.+.+ .++.||++.-+
T Consensus 89 ~~~dvViIDEaQF~~~--v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD--IVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp TTCSEEEESSGGGCTT--HHHHHHHHHH--TTCEEEEECCS
T ss_pred ccCCEEEEEchhhhhh--HHHHHHHHHh--CCCEEEEEecc
Confidence 3468999999999974 6677788877 56677777654
No 204
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=92.94 E-value=0.27 Score=56.81 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.+|+++|+|+|||.++-.++..+
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 38999999999999987777665
No 205
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.90 E-value=0.065 Score=55.07 Aligned_cols=28 Identities=29% Similarity=0.227 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.+..+.|.||+|+||||+++.|+..++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 3457899999999999999999998753
No 206
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.83 E-value=0.063 Score=53.52 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.||+|+||||+++.|+..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 346899999999999999999988753
No 207
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.81 E-value=0.35 Score=47.68 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998753
No 208
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.78 E-value=0.063 Score=54.30 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=23.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|.|++|+||||+++.|++.++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 27 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYE 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCc
Confidence 47899999999999999999998753
No 209
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=92.77 E-value=0.2 Score=59.95 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=46.4
Q ss_pred eEEEEeCCCCCCHH----HHHHHHHHHhhCC-CCEEEEEEcCCCC--cchHHHHccce-EEEecCCChhHHHHHHH
Q 036794 526 RIFVFDDCDTLSPD----SWSAISKVVDRAP-RRVVFILVSSSLD--ALPHIIISRCQ-KFFFPKMKDADIIYTLQ 593 (1152)
Q Consensus 526 kVVIIDEID~Ls~e----aqnaLLklLEepp-~~VifILaTN~~d--kL~~aL~SR~q-vI~F~~p~~~EI~eiL~ 593 (1152)
-+|||||+..+... ..+.|.++..... ..+.+|++|..+. .++..+++.+. +|-|...+..+...++.
T Consensus 299 ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 299 IVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHS
T ss_pred EEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcC
Confidence 48999999766432 2333444444433 4888999998886 57777877765 68888888777766553
No 210
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.69 E-value=0.5 Score=45.28 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998754
No 211
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.67 E-value=0.071 Score=54.57 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|+|++|+||||+++.|++.++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4568999999999999999999998754
No 212
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.65 E-value=0.097 Score=71.20 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+||+||||||||++|..|+.+.-
T Consensus 1082 ~~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A 1082 RIVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999987653
No 213
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.64 E-value=0.21 Score=48.68 Aligned_cols=22 Identities=27% Similarity=0.535 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999754
No 214
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.57 E-value=0.4 Score=46.18 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998753
No 215
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.56 E-value=0.061 Score=56.04 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=24.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|.|++|+||||+++.|++.++..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~ 32 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLA 32 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 358999999999999999999998754
No 216
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.56 E-value=0.08 Score=55.82 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=24.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|.|++|+||||+|+.|++.++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~ 43 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVC 43 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 468999999999999999999998754
No 217
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.53 E-value=0.37 Score=48.05 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999998753
No 218
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.52 E-value=0.063 Score=56.21 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|.|++|+||||+|+.|++.++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~ 34 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELK 34 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 468999999999999999999987644
No 219
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.49 E-value=0.076 Score=54.26 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=23.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..++|+|++|+||||+++.|++.++.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999998764
No 220
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.48 E-value=0.22 Score=56.11 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||+|+|||++|..++...
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998763
No 221
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.48 E-value=0.48 Score=45.35 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999754
No 222
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.47 E-value=0.066 Score=53.98 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
+..++|.||+|+||||+++.|+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 457899999999999999999875
No 223
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.46 E-value=8.6 Score=43.21 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 440 RKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 440 gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
......+.|+|++|+||||++..|+..+.
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34456789999999999999999998864
No 224
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.42 E-value=0.64 Score=45.55 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999998754
No 225
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.41 E-value=0.4 Score=46.16 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998753
No 226
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.37 E-value=0.22 Score=48.75 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988754
No 227
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=92.36 E-value=0.46 Score=51.25 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 036794 429 VAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 429 v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
..+.+..++..+ ..|+.+|+|+|||.++-.++..
T Consensus 118 Q~~ai~~~l~~~----~~ll~~~tGsGKT~~~~~~~~~ 151 (282)
T 1rif_A 118 QKDAVFEGLVNR----RRILNLPTSAGRSLIQALLARY 151 (282)
T ss_dssp HHHHHHHHHHHS----EEEECCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC----CeEEEcCCCCCcHHHHHHHHHH
Confidence 334444444442 3578999999999998777664
No 228
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=92.33 E-value=0.52 Score=49.17 Aligned_cols=40 Identities=18% Similarity=0.417 Sum_probs=24.5
Q ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcC
Q 036794 523 SQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN 562 (1152)
....+|||||+|.+.... ...+..++...+....+|+.|.
T Consensus 170 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 210 (236)
T 2pl3_A 170 TDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSA 210 (236)
T ss_dssp TTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEES
T ss_pred ccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEe
Confidence 566799999999875432 3455556665554554444443
No 229
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=92.27 E-value=0.61 Score=50.97 Aligned_cols=43 Identities=14% Similarity=0.346 Sum_probs=27.7
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDTLSPD-SWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~e-aqnaLLklLEepp~~VifILaTN~~d 565 (1152)
....+|||||+|.+... ....+..++...+....+|+.|..+.
T Consensus 146 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 189 (367)
T 1hv8_A 146 KNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMP 189 (367)
T ss_dssp TSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCC
T ss_pred ccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccC
Confidence 56689999999987433 23455566666555666666655443
No 230
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.27 E-value=0.97 Score=45.29 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998754
No 231
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=92.14 E-value=0.27 Score=62.60 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
+..++|+||.|.||||+.+.++..
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHHH
Confidence 347999999999999999998753
No 232
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.13 E-value=0.13 Score=57.44 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||||+|||++|..++..+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHH
Confidence 4579999999999999999998764
No 233
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.12 E-value=0.08 Score=55.21 Aligned_cols=26 Identities=15% Similarity=0.347 Sum_probs=23.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|.|++|+||||+|+.|++.++..
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~ 32 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLA 32 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCce
Confidence 58899999999999999999998754
No 234
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.11 E-value=0.099 Score=54.12 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=30.0
Q ss_pred HHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 429 VAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 429 v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+++.|.+.+.. ...+..+.|.||+|+||||+++.|+..+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44445444433 24456789999999999999999999886
No 235
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.11 E-value=0.097 Score=52.88 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.+..++|.|++|+||||+++.|+..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3457899999999999999999999864
No 236
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=92.10 E-value=0.58 Score=51.71 Aligned_cols=43 Identities=21% Similarity=0.362 Sum_probs=26.6
Q ss_pred CCCceEEEEeCCCCCCH--HHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 522 PSQYRIFVFDDCDTLSP--DSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~--eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
.....+|||||+|.+.. .....+..++...+.+..+|+.|..+
T Consensus 143 ~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 187 (395)
T 3pey_A 143 LQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATF 187 (395)
T ss_dssp CTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCC
T ss_pred cccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecC
Confidence 35678999999998754 23334455555555555555555444
No 237
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.02 E-value=0.16 Score=58.15 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHHHH----hCCCCcEEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 425 GQNLVAQALSNAVM----RRKVGLLYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~----~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
..+.+++.+...+. .+... .++|.|++|+|||+++++|++.+++.+
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~-~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRV-CVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCE-EEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCee-EEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 33444444444443 44443 588999999999999999999987653
No 238
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.01 E-value=0.081 Score=54.87 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=22.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|.|++|+||||+|+.|++.++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~ 27 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIP 27 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCe
Confidence 7899999999999999999988643
No 239
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.93 E-value=0.53 Score=56.17 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.|++|+||||++..||..+..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 347899999999999999999987753
No 240
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.90 E-value=0.65 Score=46.25 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=19.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.-++|.|++|+|||++...|...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998643
No 241
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.87 E-value=0.19 Score=60.68 Aligned_cols=42 Identities=17% Similarity=0.386 Sum_probs=30.5
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
+.+++++||.-. |.......+.+.|.+...+..+|++|++++
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 540 (582)
T 3b5x_A 498 DAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLS 540 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 467999999854 566667777777776544666778888765
No 242
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.86 E-value=0.093 Score=54.37 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=23.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..+.|.||+|+||||+++.|++.++..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~ 32 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWH 32 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 368899999999999999999988643
No 243
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.84 E-value=0.096 Score=52.52 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.++|+|++|+||||+++.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999884
No 244
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.83 E-value=0.15 Score=52.73 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=25.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 440 RKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 440 gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
...+..++|.|++|+||||+++.|++.+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34456789999999999999999999886
No 245
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=91.82 E-value=0.63 Score=51.63 Aligned_cols=42 Identities=17% Similarity=0.461 Sum_probs=26.7
Q ss_pred CCCceEEEEeCCCCCCH--HHHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 522 PSQYRIFVFDDCDTLSP--DSWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~--eaqnaLLklLEepp~~VifILaTN~ 563 (1152)
.....+|||||+|.+.. .....+..++...+....+|+.|..
T Consensus 150 ~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 193 (391)
T 1xti_A 150 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 193 (391)
T ss_dssp CTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESS
T ss_pred ccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEee
Confidence 35678999999998864 3444566666655545555554433
No 246
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.81 E-value=0.099 Score=55.50 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..+.|.||+|+||||+++.|++.++..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4578999999999999999999888643
No 247
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.78 E-value=0.11 Score=55.45 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.+..++|.||||+||+|.|+.|++.++..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 34578899999999999999999998754
No 248
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.77 E-value=0.2 Score=51.69 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhC--CCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 428 LVAQALSNAVMRR--KVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 428 ~v~q~Lk~aL~~g--ri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..++.|.+.+... ..+..+.|+|++|+||||+++.|+..+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4556666666543 3345789999999999999999998874
No 249
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.77 E-value=0.19 Score=57.86 Aligned_cols=30 Identities=23% Similarity=0.322 Sum_probs=25.2
Q ss_pred hCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 439 RRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 439 ~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.-..+..++|+||+|+||||++++++..+.
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 344556899999999999999999998764
No 250
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.69 E-value=0.26 Score=47.01 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999754
No 251
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.67 E-value=0.25 Score=57.76 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..++|.|++|+||||++..||..+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998764
No 252
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.66 E-value=0.67 Score=44.54 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||++...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999763
No 253
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.66 E-value=0.55 Score=63.23 Aligned_cols=84 Identities=24% Similarity=0.365 Sum_probs=47.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc------cccCC-CccceEEeCCCCCCCHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI------SHDRG-KSRNIKEVGPVGNFDFESILDLLDNM 516 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~------~i~~g-~~~dviEIdaas~~~vdeIreLle~a 516 (1152)
..++|+||||+|||++|..+|..+.... .+|.+...-. .-..+ ....++..+. ...+++.+.+..+
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~~g----~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~---~~leei~~~l~~l 805 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQREG----KTCAFIDAEHALDPIYARKLGVDIDNLLCSQP---DTGEQALEICDAL 805 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTT----CCEEEECTTSCCCHHHHHHTTCCGGGCEEECC---SSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHHcC----CCeEEEeccchHHHHHHHHcCCChhheEEecC---CcHHHHHHHHHHH
Confidence 4799999999999999999988764321 0111100000 00001 1112333332 2456666666544
Q ss_pred hhCCCCCCceEEEEeCCCCCC
Q 036794 517 VTSRPPSQYRIFVFDDCDTLS 537 (1152)
Q Consensus 517 ~~~P~~a~~kVVIIDEID~Ls 537 (1152)
... ....+||||++..+.
T Consensus 806 v~~---~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 806 ARS---GAVDVIVVDSVAALT 823 (1706)
T ss_dssp HHH---TCCSEEEESCSTTCC
T ss_pred HHc---cCCCEEEEechhhhc
Confidence 322 345899999999986
No 254
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.64 E-value=0.1 Score=54.79 Aligned_cols=26 Identities=19% Similarity=0.479 Sum_probs=23.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|.|++|+||||+|+.|++.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~ 27 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLA 27 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 37899999999999999999988643
No 255
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.62 E-value=0.08 Score=54.57 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..++|.||+|+||||+++.|++.+.
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3589999999999999999998863
No 256
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=91.60 E-value=0.36 Score=60.69 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..++|+||.|.||||+.+.++...
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 478999999999999999998754
No 257
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=91.58 E-value=1.6 Score=48.58 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=23.6
Q ss_pred CCCceEEEEeCCCCCCHHHHH-HHHHHHhhCCCCEEEEEEc
Q 036794 522 PSQYRIFVFDDCDTLSPDSWS-AISKVVDRAPRRVVFILVS 561 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~eaqn-aLLklLEepp~~VifILaT 561 (1152)
.....+|||||+|.+....+. .+..++...+....+|+.|
T Consensus 161 ~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lS 201 (400)
T 1s2m_A 161 LSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFS 201 (400)
T ss_dssp CTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEE
T ss_pred cccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEE
Confidence 356789999999977654443 3444444444444444443
No 258
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.55 E-value=1.3 Score=52.13 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.|+||+|||++|..+|..+..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHH
Confidence 457999999999999999999887643
No 259
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=91.52 E-value=0.19 Score=62.88 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||.|.||||+.+.++...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 3578999999999999999998764
No 260
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.47 E-value=0.12 Score=51.83 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.+..+.|+|++|+||||+++.|+..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999999987
No 261
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.46 E-value=0.16 Score=61.94 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
++...+++..++... ...||.||||||||+++-.+...+.
T Consensus 191 N~~Q~~AV~~al~~~---~~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 191 DTSQKEAVLFALSQK---ELAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp CHHHHHHHHHHHHCS---SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCC---CceEEECCCCCCHHHHHHHHHHHHH
Confidence 566667777777543 3579999999999976655554443
No 262
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=91.46 E-value=0.45 Score=53.11 Aligned_cols=42 Identities=19% Similarity=0.433 Sum_probs=25.2
Q ss_pred CCceEEEEeCCCCCCH--HHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 523 SQYRIFVFDDCDTLSP--DSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~--eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
....+|||||+|.+.. .....+..++...+.+..+|+.|..+
T Consensus 167 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 210 (412)
T 3fht_A 167 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATF 210 (412)
T ss_dssp GGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCC
T ss_pred hhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeec
Confidence 4568999999997643 23334444555445555555555443
No 263
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.44 E-value=2.7 Score=45.75 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.+.|.||+|+||||+.+.|+.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999987643
No 264
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=91.42 E-value=1.7 Score=46.25 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
-++|.|.+|+|||+++..|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 589999999999999998864
No 265
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.41 E-value=0.31 Score=47.86 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999998753
No 266
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.34 E-value=0.11 Score=52.64 Aligned_cols=24 Identities=38% Similarity=0.731 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..++|.||+|+||||+++.|+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 358899999999999999998743
No 267
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.32 E-value=0.12 Score=54.48 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=23.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|.||||+||+|.|+.|++.++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~ 27 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFV 27 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCe
Confidence 36899999999999999999998754
No 268
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=91.28 E-value=0.4 Score=51.10 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=24.1
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhCCCCEEEEEEcC
Q 036794 523 SQYRIFVFDDCDTLSPD-SWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~e-aqnaLLklLEepp~~VifILaTN 562 (1152)
....+|||||+|.+... ....+..++...+.+..+|+.|.
T Consensus 185 ~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SA 225 (249)
T 3ber_A 185 RALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 225 (249)
T ss_dssp TTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEES
T ss_pred cccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEec
Confidence 55689999999976543 23345555555444444444443
No 269
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=91.27 E-value=0.42 Score=55.37 Aligned_cols=17 Identities=35% Similarity=0.247 Sum_probs=15.0
Q ss_pred cEEEEEcCCCchHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCA 460 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlA 460 (1152)
..+|++||+|+|||.++
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 35899999999999976
No 270
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.17 E-value=0.69 Score=51.97 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 428 ~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.+...+.-.+..+. .++|.||+|+||||++++++..+.
T Consensus 159 ~~l~~l~~~i~~g~---~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 159 QAISAIKDGIAIGK---NVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHHHHHHHHHHTC---CEEEEESTTSCHHHHHHHGGGGSC
T ss_pred HHHhhhhhhccCCC---EEEEECCCCCCHHHHHHHHhCCCc
Confidence 45566666666665 489999999999999999987754
No 271
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.15 E-value=0.31 Score=60.91 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=22.4
Q ss_pred HHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 036794 432 ALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 432 ~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.+..++..+ ..+++.||+|+|||+++..+...
T Consensus 101 ~i~~~l~~~---~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 101 EFLKLYQNN---QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HHHHHHHHC---SEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCC---CeEEEECCCCCCHHHHHHHHHHH
Confidence 334445444 35899999999999977666443
No 272
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.10 E-value=0.18 Score=49.38 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||++...+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999998653
No 273
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=91.06 E-value=1.2 Score=46.69 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=25.3
Q ss_pred CCCceEEEEeCCCCCCH----HHHHHHHHHHhhC-CCCEE-EEEEcCCC
Q 036794 522 PSQYRIFVFDDCDTLSP----DSWSAISKVVDRA-PRRVV-FILVSSSL 564 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~----eaqnaLLklLEep-p~~Vi-fILaTN~~ 564 (1152)
....++|||||+|.+.. .....+..++... +.++. ++++++-+
T Consensus 173 ~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~ 221 (245)
T 3dkp_A 173 LASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFA 221 (245)
T ss_dssp CTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCC
T ss_pred cccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCC
Confidence 35678999999998865 3445555555542 23333 44444433
No 274
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.02 E-value=0.14 Score=52.12 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=23.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.+.|+|++|+||||+++.|++.++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~ 29 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVP 29 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 68899999999999999999988744
No 275
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.99 E-value=0.64 Score=44.99 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|++|+|||+++..+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999853
No 276
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.97 E-value=0.12 Score=52.58 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..+.|.|++|+||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999987
No 277
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.94 E-value=0.14 Score=53.20 Aligned_cols=27 Identities=33% Similarity=0.544 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.+..+.|.||+|+||||+++.|+..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345789999999999999999998753
No 278
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.93 E-value=0.14 Score=49.41 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999764
No 279
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=90.93 E-value=0.25 Score=51.32 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=25.6
Q ss_pred CCCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcCC
Q 036794 522 PSQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN~ 563 (1152)
....++|||||+|.+.... ...+..++...+.+..+|+.|..
T Consensus 165 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 207 (228)
T 3iuy_A 165 LRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSAT 207 (228)
T ss_dssp CTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESC
T ss_pred cccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEee
Confidence 3567899999999875432 33455555555545555554433
No 280
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=90.92 E-value=0.13 Score=52.15 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=22.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+.|.||+|+||||+++.|+..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999998753
No 281
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.86 E-value=1.1 Score=43.98 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998754
No 282
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.85 E-value=0.81 Score=45.67 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999998764
No 283
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.84 E-value=0.24 Score=47.94 Aligned_cols=20 Identities=40% Similarity=0.708 Sum_probs=17.9
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLA 464 (1152)
-++|.|++|+|||++++.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 37899999999999999885
No 284
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.84 E-value=3.2 Score=39.73 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL 467 (1152)
++|.|++|+|||+++..+...-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999997653
No 285
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.83 E-value=0.58 Score=51.70 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..+.|.|+.|+||||++..+|..+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 457888999999999999999988753
No 286
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=90.82 E-value=0.49 Score=49.40 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.4
Q ss_pred EEEEEcCCCchHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCAR 461 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlAR 461 (1152)
.+++.+|+|+|||.++-
T Consensus 63 ~~l~~a~TGsGKT~~~~ 79 (230)
T 2oxc_A 63 DLIVQAKSGTGKTCVFS 79 (230)
T ss_dssp CEEEECCTTSSHHHHHH
T ss_pred CEEEECCCCCcHHHHHH
Confidence 37999999999998743
No 287
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.77 E-value=0.15 Score=51.92 Aligned_cols=25 Identities=40% Similarity=0.695 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..+.|.||+|+||||+++.|+..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3468899999999999999999874
No 288
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.77 E-value=2.3 Score=41.30 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAk 465 (1152)
..++|.|++|+|||+++..+..
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4589999999999999999864
No 289
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.77 E-value=1.1 Score=49.64 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+..++|.|+||+|||++|..+|..+.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3445899999999999999999987654
No 290
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=90.73 E-value=0.47 Score=49.01 Aligned_cols=45 Identities=16% Similarity=0.366 Sum_probs=26.3
Q ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEE-cCCCCcc
Q 036794 523 SQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILV-SSSLDAL 567 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILa-TN~~dkL 567 (1152)
...++|||||+|.+.... ...+..++...+.+..+|+. ++-+..+
T Consensus 149 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~ 195 (219)
T 1q0u_A 149 HTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKL 195 (219)
T ss_dssp GGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGG
T ss_pred CcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHH
Confidence 456799999999875432 33455556655545544444 4433333
No 291
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.73 E-value=0.4 Score=47.26 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999754
No 292
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.72 E-value=0.15 Score=51.75 Aligned_cols=25 Identities=36% Similarity=0.592 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..+.|.||+|+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468999999999999999998876
No 293
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.65 E-value=0.76 Score=46.01 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
-++|.|++|+|||+++..+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999997653
No 294
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.65 E-value=0.32 Score=48.19 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999764
No 295
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.61 E-value=0.68 Score=44.62 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
-++|.|++|+|||+++..+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999864
No 296
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.58 E-value=1.8 Score=43.04 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
..++|.|++|+|||+++..+...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999764
No 297
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.57 E-value=0.32 Score=55.14 Aligned_cols=28 Identities=21% Similarity=0.111 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+..++|.|+||+|||++|..+|..+.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4445899999999999999999988754
No 298
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.57 E-value=0.51 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=19.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.-++|.|++|+|||+++..|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 35899999999999999998753
No 299
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.47 E-value=0.36 Score=49.18 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999998653
No 300
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=90.46 E-value=0.034 Score=59.88 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=25.1
Q ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcCC
Q 036794 523 SQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN~ 563 (1152)
...++|||||+|.+.... ...+..++...+....+|+.|..
T Consensus 200 ~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT 241 (262)
T 3ly5_A 200 KNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSAT 241 (262)
T ss_dssp TTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSS
T ss_pred ccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEec
Confidence 567899999999875542 33455555555555555554433
No 301
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.34 E-value=0.34 Score=47.87 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999998754
No 302
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.31 E-value=1 Score=43.85 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999765
No 303
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.28 E-value=0.38 Score=48.45 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998643
No 304
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.28 E-value=0.32 Score=53.82 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=25.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+..+.|.||+|+||||+++.|+..+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 44557899999999999999999998864
No 305
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.26 E-value=0.08 Score=51.85 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
-++|.|++|+|||+++..+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999998853
No 306
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=90.26 E-value=0.58 Score=52.60 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.+|+.+|+|+|||..+-.++...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999988876654
No 307
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=90.23 E-value=0.65 Score=53.80 Aligned_cols=43 Identities=19% Similarity=0.444 Sum_probs=26.3
Q ss_pred CCceEEEEeCCCCCCH--HHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDTLSP--DSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~--eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
...++|||||+|.+.. .....+..++...+.++.+|+.+..+.
T Consensus 234 ~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 278 (479)
T 3fmp_B 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE 278 (479)
T ss_dssp GGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCC
T ss_pred ccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCC
Confidence 5678999999997643 333444555555455555555554443
No 308
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.15 E-value=0.18 Score=53.90 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..+.|+|++|+||||+|+.|++.++..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 3478999999999999999999988764
No 309
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=90.15 E-value=0.78 Score=53.54 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
.+|++||+|+|||.++-.++..
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~ 151 (510)
T 2oca_A 130 RRILNLPTSAGRSLIQALLARY 151 (510)
T ss_dssp EEEEECCSTTTHHHHHHHHHHH
T ss_pred CcEEEeCCCCCHHHHHHHHHHH
Confidence 4799999999999998766654
No 310
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.13 E-value=0.15 Score=52.18 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.+.|+|++|+||||+++.|++ ++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~ 26 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGA 26 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTC
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCC
Confidence 478999999999999999998 653
No 311
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.11 E-value=0.28 Score=48.08 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998654
No 312
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.09 E-value=1.9 Score=42.51 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999988643
No 313
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=89.95 E-value=0.73 Score=51.07 Aligned_cols=43 Identities=16% Similarity=0.419 Sum_probs=27.2
Q ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN~~d 565 (1152)
....+|||||+|.+.... ...+..++...+....+|+.|..+.
T Consensus 161 ~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 204 (394)
T 1fuu_A 161 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 204 (394)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred hhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecC
Confidence 467899999999875432 3345555555555666666655443
No 314
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.94 E-value=0.46 Score=48.04 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.-++|.|++|+|||+++..+...
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999998753
No 315
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=89.91 E-value=0.28 Score=62.55 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
..++|+||.|.||||+.+.++-.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999543
No 316
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.91 E-value=0.15 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.+.|+||+|+||||+++.|+. ++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg 26 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LG 26 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TT
T ss_pred EEEEECCCCCCHHHHHHHHHH-CC
Confidence 578999999999999999987 44
No 317
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.82 E-value=0.94 Score=45.32 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999998753
No 318
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.73 E-value=0.12 Score=52.86 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.+.|.|++|+||||+++.|++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999864
No 319
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=89.69 E-value=0.67 Score=51.83 Aligned_cols=43 Identities=16% Similarity=0.370 Sum_probs=28.7
Q ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN~~d 565 (1152)
...++|||||+|.+.... ...+..++...+.+..+|+.|..+.
T Consensus 182 ~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 225 (414)
T 3eiq_A 182 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMP 225 (414)
T ss_dssp TTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCC
T ss_pred ccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence 446899999999875433 3456666666666666666665543
No 320
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=89.66 E-value=0.31 Score=59.95 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=21.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..++|+|++|.|||+++-.++..+.
T Consensus 193 ~~~vlta~RGRGKSa~lG~~~a~~~ 217 (671)
T 2zpa_A 193 GVAAVTAARGRGKSALAGQLISRIA 217 (671)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHH
Confidence 3579999999999999999988764
No 321
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.61 E-value=0.52 Score=46.90 Aligned_cols=22 Identities=32% Similarity=0.455 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999764
No 322
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.57 E-value=0.33 Score=51.98 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=26.2
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEc
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVS 561 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaT 561 (1152)
.+..+|+|||++.++.+....|..+. + .++.+|++.
T Consensus 100 ~~~dvV~IDEaQFf~~~~v~~l~~la-~--~gi~Vi~~G 135 (219)
T 3e2i_A 100 TNVDVIGIDEVQFFDDEIVSIVEKLS-A--DGHRVIVAG 135 (219)
T ss_dssp TTCSEEEECCGGGSCTHHHHHHHHHH-H--TTCEEEEEE
T ss_pred cCCCEEEEechhcCCHHHHHHHHHHH-H--CCCEEEEee
Confidence 45679999999999988777777766 3 245555554
No 323
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.45 E-value=0.22 Score=53.61 Aligned_cols=27 Identities=48% Similarity=0.708 Sum_probs=24.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..+.|.||+|+||||+++.|++.++..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~ 36 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGAR 36 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 468999999999999999999998754
No 324
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=89.42 E-value=0.17 Score=51.42 Aligned_cols=24 Identities=29% Similarity=0.438 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.+.|.||+|+||||+++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999998764
No 325
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.36 E-value=0.38 Score=46.82 Aligned_cols=21 Identities=48% Similarity=0.634 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
-++|.|++|+|||+++..+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 478999999999999998864
No 326
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.33 E-value=0.57 Score=54.83 Aligned_cols=27 Identities=19% Similarity=0.130 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.+..++|.|+||+|||++|..+|..+.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a 222 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMS 222 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHH
Confidence 345899999999999999999987754
No 327
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=89.32 E-value=1.8 Score=44.79 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=19.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.-++|.|++|+|||+++..|...
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998643
No 328
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.31 E-value=0.98 Score=45.64 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999999764
No 329
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=89.30 E-value=0.44 Score=51.56 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=17.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
.+++.+|+|+|||.++-..+-.
T Consensus 33 ~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 33 NVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEcCCCCcHHHHHHHHHHh
Confidence 3799999999999877655443
No 330
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.28 E-value=0.15 Score=57.96 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
+..++|.||+|+|||+++..||+.+++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~ei 68 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEV 68 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcE
Confidence 45789999999999999999999987653
No 331
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=89.27 E-value=0.93 Score=44.04 Aligned_cols=22 Identities=36% Similarity=0.452 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999998743
No 332
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.24 E-value=0.6 Score=45.12 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999998754
No 333
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.24 E-value=0.42 Score=48.36 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998743
No 334
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.23 E-value=0.4 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||++...|...
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998653
No 335
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.21 E-value=0.57 Score=48.19 Aligned_cols=22 Identities=32% Similarity=0.455 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999764
No 336
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=89.20 E-value=0.24 Score=50.83 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..+.|.||.|+||||+++.|+..+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999999876
No 337
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.17 E-value=0.59 Score=46.96 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999998754
No 338
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.07 E-value=0.17 Score=54.91 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 428 ~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++..+.-.+.....+..+.|.|++|+||||+++.|++.++..
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~ 75 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYT 75 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 3444444444441112348899999999999999999998754
No 339
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.05 E-value=3.4 Score=41.34 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999887654
No 340
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=88.95 E-value=0.87 Score=46.35 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.-++|.|++|+|||+++..+...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998764
No 341
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.93 E-value=0.24 Score=51.58 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||+|+|||+++..++..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999998887654
No 342
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.92 E-value=4 Score=45.61 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|+|++|+||||++..||..+..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 347999999999999999999988754
No 343
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.86 E-value=0.36 Score=47.94 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998654
No 344
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.74 E-value=0.73 Score=45.76 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.-++|.|++|+|||++...|...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999753
No 345
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=88.73 E-value=0.57 Score=47.48 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998754
No 346
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.72 E-value=0.46 Score=55.35 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 429 VAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 429 v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
....|...+ . .....++|+||+|+||||+.++++..++..
T Consensus 155 ~~~~L~~l~-~-~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 155 NHDNFRRLI-K-RPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp HHHHHHHHH-T-SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHH-H-hcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 344455553 2 344578999999999999999999988643
No 347
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.68 E-value=0.23 Score=51.81 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAk 465 (1152)
+..++|.||+|+||||+++.|+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 34789999999999999999984
No 348
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=88.65 E-value=0.57 Score=57.11 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=18.2
Q ss_pred HhhCCCCCCceEEEEeCCCCCCHHH
Q 036794 516 MVTSRPPSQYRIFVFDDCDTLSPDS 540 (1152)
Q Consensus 516 a~~~P~~a~~kVVIIDEID~Ls~ea 540 (1152)
+...+......+|||||+|.+....
T Consensus 269 l~~~~~l~~~~~iViDEah~~~~~~ 293 (618)
T 2whx_A 269 LLSSTRVPNYNLIVMDEAHFTDPCS 293 (618)
T ss_dssp HHHCSSCCCCSEEEEESTTCCSHHH
T ss_pred HhccccccCCeEEEEECCCCCCccH
Confidence 3334455778999999999996543
No 349
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.61 E-value=0.79 Score=53.31 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.+..++|+|+||+|||++|..+|..+.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999988754
No 350
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.41 E-value=8.3 Score=43.23 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+..+.|.||+|+||||+.+.|+..+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3455789999999999999999998764
No 351
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=88.28 E-value=0.29 Score=52.51 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..+.|.||+|+||||+++.|++.++..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 3468899999999999999999887754
No 352
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.25 E-value=0.36 Score=48.07 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999754
No 353
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.24 E-value=0.7 Score=45.73 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
-++|.|++|+|||++++.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47999999999999998776543
No 354
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=88.20 E-value=0.54 Score=57.61 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=25.6
Q ss_pred CCceEEEEeCCCCCCH----HHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 523 SQYRIFVFDDCDTLSP----DSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~----eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
...++|||||+|.+.. .....++..+.....++.+|+.|..+
T Consensus 137 ~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl 182 (702)
T 2p6r_A 137 KAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATA 182 (702)
T ss_dssp GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred hhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCc
Confidence 5678999999998743 23445555554333455555555443
No 355
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=88.17 E-value=3.1 Score=54.39 Aligned_cols=39 Identities=23% Similarity=0.123 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHH
Q 036794 425 GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLA 464 (1152)
.|..++..+...+..++.. .+|++||.|+|||.+|-..+
T Consensus 607 ~Q~~ai~~il~~~~~g~p~-d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 607 DQAQAINAVLSDMCQPLAM-DRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp HHHHHHHHHHHHHHSSSCC-EEEEECCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcC-cEEEECCCCCCHHHHHHHHH
Confidence 4666666666666555432 47999999999998876444
No 356
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=88.14 E-value=1.5 Score=44.33 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999998643
No 357
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.13 E-value=0.29 Score=49.55 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
+..+.|+|++|+||||+++.|++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 346899999999999999999986
No 358
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=88.11 E-value=0.29 Score=50.82 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.+.|+|++|+||||+++.|++.+++.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~ 39 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAH 39 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 67899999999999999999987654
No 359
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.05 E-value=6.9 Score=37.54 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAk 465 (1152)
.-++|.|++|+|||+++..+..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999865
No 360
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.03 E-value=1.1 Score=45.80 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999998764
No 361
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=88.02 E-value=0.48 Score=56.08 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=22.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|.||+|+|||+++..++......
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~ 178 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE 178 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc
Confidence 47899999999999999998876543
No 362
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=87.88 E-value=2.9 Score=48.87 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.|+.|+||||++-.||..+..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458899999999999999999988764
No 363
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.85 E-value=9.3 Score=42.88 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+..+.|.||+|+||||+++.|+..+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34568999999999999999999988753
No 364
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=87.84 E-value=0.73 Score=45.30 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
-++|.|++|+|||+++..+..
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 488999999999999999874
No 365
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.78 E-value=0.3 Score=52.81 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|+||+|+|||+++..|+..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 34789999999999999999998654
No 366
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=87.71 E-value=0.72 Score=47.39 Aligned_cols=21 Identities=43% Similarity=0.540 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
-++|.|++|+|||+++..+..
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999864
No 367
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=87.63 E-value=0.45 Score=57.92 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
++.....+..++. ...+|+.||||||||+++..+...+.
T Consensus 182 n~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 182 NHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp CHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 3444455555443 24689999999999999888877654
No 368
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.60 E-value=0.37 Score=50.77 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..+.|.|++|+||||+++.|++.++..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~ 43 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFT 43 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 3468999999999999999999988744
No 369
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=87.58 E-value=0.56 Score=47.04 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=4.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988754
No 370
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.58 E-value=0.31 Score=50.45 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=21.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+.|+|++|+||||+++.|+. ++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~ 29 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGI 29 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTC
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCC
Confidence 4688999999999999999987 543
No 371
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.57 E-value=0.41 Score=46.79 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4889999999999999998753
No 372
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=87.55 E-value=0.73 Score=56.48 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=16.7
Q ss_pred cEEEEEcCCCchHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIF 463 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaL 463 (1152)
..+|++||+|+|||+++-..
T Consensus 47 ~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHHH
Confidence 45899999999999998443
No 373
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=87.54 E-value=0.48 Score=47.75 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
-++|.|++|+|||+++..+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999998864
No 374
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=87.45 E-value=0.6 Score=55.07 Aligned_cols=42 Identities=19% Similarity=0.395 Sum_probs=25.7
Q ss_pred CCceEEEEeCCCCCCH--HHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 523 SQYRIFVFDDCDTLSP--DSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~--eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
...++|||||+|.+.. .....+..++...+.++.+|+.|..+
T Consensus 258 ~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~ 301 (508)
T 3fho_A 258 RDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATF 301 (508)
T ss_dssp TTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred cCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCC
Confidence 5678999999998764 22334444555445556555555444
No 375
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=87.28 E-value=0.74 Score=48.46 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|.+|+|||+++..+..
T Consensus 16 ivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHh
Confidence 78999999999999998865
No 376
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=87.26 E-value=0.2 Score=53.01 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=14.8
Q ss_pred EEEEEcCCCchHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARI 462 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARa 462 (1152)
.+++.+|+|+|||.++-.
T Consensus 62 ~~l~~a~TGsGKT~~~~~ 79 (253)
T 1wrb_A 62 DIMACAQTGSGKTAAFLI 79 (253)
T ss_dssp CEEEECCTTSSHHHHHHH
T ss_pred CEEEECCCCChHHHHHHH
Confidence 378999999999986543
No 377
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.24 E-value=6.4 Score=38.89 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=20.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHH
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAk 465 (1152)
+...-++|.|++|+|||++...+..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3344689999999999999999874
No 378
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.23 E-value=0.39 Score=50.98 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.|++|+||||+++.|++.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 456899999999999999999999864
No 379
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=87.22 E-value=0.33 Score=50.08 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+.|.||+|+||||+++.|...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3578999999999999999988753
No 380
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=87.22 E-value=0.3 Score=50.12 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..+.|+|++|+||||+++.|++.+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468899999999999999999875
No 381
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=87.16 E-value=0.57 Score=47.80 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.7
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
-++|.|++|+|||+++..|..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 489999999999999998864
No 382
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.14 E-value=0.54 Score=46.92 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.-++|.|++|+|||+++..|...
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 35899999999999999999763
No 383
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=87.11 E-value=0.89 Score=53.03 Aligned_cols=16 Identities=31% Similarity=0.266 Sum_probs=14.3
Q ss_pred cEEEEEcCCCchHHHH
Q 036794 444 LLYVFYGPHGTGKTSC 459 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtl 459 (1152)
..+|+.+|+|+|||++
T Consensus 22 ~~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 22 QMTVLDLHPGSGKTRK 37 (459)
T ss_dssp CEEEECCCTTSCTTTT
T ss_pred CcEEEECCCCCCHHHH
Confidence 4689999999999986
No 384
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=87.10 E-value=0.26 Score=59.48 Aligned_cols=43 Identities=19% Similarity=0.366 Sum_probs=30.1
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
+.+++++||.-. |.......+.+.|.+...+..+|++|++++.
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 541 (582)
T 3b60_A 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST 541 (582)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 367999999854 5666666777777664335667888887763
No 385
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.03 E-value=0.4 Score=49.85 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
+..++|+|+||+|||++|..++..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 457999999999999999887654
No 386
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.94 E-value=0.97 Score=45.39 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.-++|.|++|+|||+++..+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998764
No 387
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=86.93 E-value=0.32 Score=48.93 Aligned_cols=20 Identities=35% Similarity=0.517 Sum_probs=17.7
Q ss_pred CcEEEEEcCCCchHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARI 462 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARa 462 (1152)
+..+.|.||+|+||||+++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34689999999999999994
No 388
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=86.89 E-value=0.6 Score=54.30 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=16.9
Q ss_pred hhCCCCCCceEEEEeCCCCCCHH
Q 036794 517 VTSRPPSQYRIFVFDDCDTLSPD 539 (1152)
Q Consensus 517 ~~~P~~a~~kVVIIDEID~Ls~e 539 (1152)
...+.....++|||||+|.+...
T Consensus 103 ~~~~~l~~~~~iViDEah~~~~~ 125 (451)
T 2jlq_A 103 LSSTRVPNYNLIVMDEAHFTDPC 125 (451)
T ss_dssp HHCSCCCCCSEEEEETTTCCSHH
T ss_pred hCcccccCCCEEEEeCCccCCcc
Confidence 33445567899999999998543
No 389
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.84 E-value=0.47 Score=47.43 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999765
No 390
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=86.83 E-value=0.32 Score=50.24 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999998654
No 391
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=86.81 E-value=0.45 Score=45.89 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
-++|.|++|+|||+++..+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478999999999999999874
No 392
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=86.77 E-value=0.34 Score=55.04 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=24.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|.||+|+|||++|+.||+.+++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~ 34 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGE 34 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEE
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCc
Confidence 468999999999999999999998743
No 393
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=86.77 E-value=2.3 Score=45.63 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=23.6
Q ss_pred HHHHhCCCCcEEEEEcCCCchHHHHHHHHHH
Q 036794 435 NAVMRRKVGLLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 435 ~aL~~gri~~~yLL~GPpGTGKTtlARaLAk 465 (1152)
.....+.....++|.|++|+|||++...|..
T Consensus 31 ~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 31 NLKQEDVNSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp HHHHTTCCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHhhcCCCCeEEEEECCCCCCHHHHHHHHhC
Confidence 3334444445789999999999999999874
No 394
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=86.74 E-value=0.52 Score=47.69 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999998653
No 395
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=86.74 E-value=6.6 Score=39.00 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999753
No 396
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=86.71 E-value=2.7 Score=42.49 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||++...+...
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998753
No 397
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=86.65 E-value=0.35 Score=49.92 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.+.|+|++|+|||++++.|++.++..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~ 30 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMI 30 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 57899999999999999999987643
No 398
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=86.53 E-value=8.4 Score=45.27 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.++|.|++|+|||++...|...-
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998763
No 399
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=86.51 E-value=0.15 Score=52.18 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=18.1
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLA 464 (1152)
-++|.|++|+|||+++..|.
T Consensus 13 ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999998875
No 400
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=86.46 E-value=1.2 Score=51.83 Aligned_cols=17 Identities=29% Similarity=0.190 Sum_probs=14.9
Q ss_pred cEEEEEcCCCchHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCA 460 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlA 460 (1152)
..+|+.||+|+|||.++
T Consensus 9 ~~vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 9 MTTVLDFHPGAGKTRRF 25 (440)
T ss_dssp CEEEECCCTTSSTTTTH
T ss_pred CCEEEEcCCCCCHHHHH
Confidence 46899999999999975
No 401
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.44 E-value=0.26 Score=52.29 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..++|.||+|+|||++|..|++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4699999999999999999988754
No 402
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=86.40 E-value=0.29 Score=48.18 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988753
No 403
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=86.39 E-value=0.43 Score=50.15 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=22.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+.|.||+|+||||+++.|++...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999998753
No 404
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=86.34 E-value=0.45 Score=47.91 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..+..+.|.||.|+||||++++|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 334578999999999999999999988
No 405
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=86.27 E-value=0.39 Score=48.24 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999988754
No 406
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.23 E-value=0.66 Score=52.21 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=31.5
Q ss_pred cCcHHHHHHHHHHHHhC---CCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 424 VGQNLVAQALSNAVMRR---KVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 424 VGQe~v~q~Lk~aL~~g---ri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+|.......+...+... ..+..+.|.||+|+||||+++.|+..+.
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34444444444444443 2344788999999999999999998875
No 407
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.20 E-value=0.58 Score=47.68 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999998753
No 408
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=86.12 E-value=1.4 Score=46.30 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=26.1
Q ss_pred CCCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcCC
Q 036794 522 PSQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN~ 563 (1152)
....++|||||+|.+.... ...+..++...+.+..+|+.|..
T Consensus 174 ~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT 216 (242)
T 3fe2_A 174 LRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 216 (242)
T ss_dssp CTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESC
T ss_pred cccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEee
Confidence 3566899999999876543 34555556655555555554433
No 409
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=86.11 E-value=0.44 Score=49.17 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..+.|.||+|+||||++++|+..+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468899999999999999999876
No 410
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=86.09 E-value=0.49 Score=48.57 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=33.6
Q ss_pred ccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 423 LVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 423 LVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+-++......+...+...+. ..++|.|++|+|||+++..|+..+.
T Consensus 11 l~~~~~~~~~~~~~~~~~~~-~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 11 LAENKRLAEKNREALRESGT-VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHTC-EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HhhcHHHHHHHHHhhcccCc-eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 33455666666666655544 4688999999999999999988763
No 411
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=86.09 E-value=0.49 Score=50.24 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+-|.||.|+||||+++.|+..++.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhch
Confidence 46889999999999999999998753
No 412
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=86.04 E-value=0.26 Score=49.48 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.-++|.|++|+|||++...+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999998764
No 413
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=85.92 E-value=0.42 Score=48.68 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998754
No 414
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.74 E-value=1.8 Score=52.70 Aligned_cols=158 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEe----CCCCCCCHHHHHHHHHHHhhCC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV----GPVGNFDFESILDLLDNMVTSR 520 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEI----daas~~~vdeIreLle~a~~~P 520 (1152)
.+.|.||.|+||||++++|+..+................-..........+.+. -...........++++.+....
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~ 459 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDD 459 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTT
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChh
Q ss_pred CCCC----------------------ceEEEEeCCCC-CCHHHHHHHHHHHhhC--CCCEEEEEEcCCCCcchHHHHccc
Q 036794 521 PPSQ----------------------YRIFVFDDCDT-LSPDSWSAISKVVDRA--PRRVVFILVSSSLDALPHIIISRC 575 (1152)
Q Consensus 521 ~~a~----------------------~kVVIIDEID~-Ls~eaqnaLLklLEep--p~~VifILaTN~~dkL~~aL~SR~ 575 (1152)
.... ..|+++||.-. |.......+.++|.+. .....+|++|.+.+ +...+-.|.
T Consensus 460 ~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrv 538 (608)
T 3j16_B 460 IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKV 538 (608)
T ss_dssp TSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEE
T ss_pred hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEE
Q ss_pred eEEE------ecCCChhHHHHHHHHHHHHcCCCC
Q 036794 576 QKFF------FPKMKDADIIYTLQWIASKEGIEI 603 (1152)
Q Consensus 576 qvI~------F~~p~~~EI~eiL~~iakkeGl~I 603 (1152)
.++. ...-+++++..-........++.+
T Consensus 539 ivl~~~~g~~~~~g~p~~~~~~~~~~~~~~~~~~ 572 (608)
T 3j16_B 539 IVFEGIPSKNAHARAPESLLTGCNRFLKNLNVTF 572 (608)
T ss_dssp EECEEETTTEEECCCCEEHHHHHHHHHHHHTCCB
T ss_pred EEEeCCCCeEEecCChHHHhhhhhHHHHhcCcee
No 415
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=85.65 E-value=0.31 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=15.7
Q ss_pred cEEEEEcCCCchHHHHHHHHH-HHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFA-RAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLA-keL 467 (1152)
..+.|.||+|+||||+++.|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 468899999999999999998 764
No 416
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=85.61 E-value=2.4 Score=46.94 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|.|++|+||||++..+|..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999998875
No 417
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=85.60 E-value=2.6 Score=47.23 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=26.4
Q ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 523 SQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN~~ 564 (1152)
...++|||||+|.+.... ...+..++...+....+|+.|..+
T Consensus 178 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 220 (410)
T 2j0s_A 178 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 220 (410)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCC
T ss_pred hheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCC
Confidence 456899999999765433 345566666555555555555443
No 418
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=85.48 E-value=0.41 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.+.|.||+|+||||+++.|+..+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999999865
No 419
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=85.46 E-value=1.4 Score=47.51 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
.++|.|.+|+|||++...|...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999654
No 420
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=85.46 E-value=6.5 Score=43.37 Aligned_cols=119 Identities=16% Similarity=0.187 Sum_probs=55.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCH-HHHHHHHHH-HhhCCCC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF-ESILDLLDN-MVTSRPP 522 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~v-deIreLle~-a~~~P~~ 522 (1152)
.+.|.|.+|+||||+...|...-... ....|.........+.......+..+|.++.... ..+.+.+.. +...-..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~i--vs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ 86 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAP--ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 86 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSC--CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCceee--ecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhc
Confidence 47899999999999999986431111 0111111111111111112233445565554321 122222221 1111122
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
++.-++++|=-+.+... ...++..+.+...++.+|++.|..|.
T Consensus 87 ad~il~VvD~~~~~~~~-~~~i~~~l~~~~~~~p~ilV~NK~Dl 129 (301)
T 1wf3_A 87 VNAVVWVVDLRHPPTPE-DELVARALKPLVGKVPILLVGNKLDA 129 (301)
T ss_dssp CSEEEEEEETTSCCCHH-HHHHHHHHGGGTTTSCEEEEEECGGG
T ss_pred CCEEEEEEECCCCCChH-HHHHHHHHHhhcCCCCEEEEEECccc
Confidence 45566777765555544 34455556553223445566666553
No 421
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=85.38 E-value=3.6 Score=51.54 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=29.4
Q ss_pred CcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHH
Q 036794 425 GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAk 465 (1152)
.|..++..+...+..+... .+|+.||.|+|||.++-..+-
T Consensus 372 ~Q~~ai~~I~~~l~~~~~~-~~Ll~a~TGSGKTlvall~il 411 (780)
T 1gm5_A 372 AQKRAHQEIRNDMISEKPM-NRLLQGDVGSGKTVVAQLAIL 411 (780)
T ss_dssp HHHHHHHHHHHHHHSSSCC-CCEEECCSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCC-cEEEEcCCCCCHHHHHHHHHH
Confidence 4777788777776655433 378999999999998765543
No 422
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=85.35 E-value=6.6 Score=44.09 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
...++|.|++|+|||++...++..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998653
No 423
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=85.29 E-value=0.42 Score=46.89 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||++...+...
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999988753
No 424
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=85.27 E-value=0.48 Score=56.66 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHH-hCCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 426 QNLVAQALSNAVM-RRKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~-~gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..++.+.|.+... ..+.+..++|.|.+|+||||+|++||+.++.
T Consensus 377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3566666665542 2334467999999999999999999999985
No 425
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=85.25 E-value=0.9 Score=50.77 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 440 RKVGLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 440 gri~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
-..+..+.|.||+|+||||++++|+..+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3445678999999999999999999987
No 426
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=85.18 E-value=0.92 Score=46.06 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=18.1
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLA 464 (1152)
-++|.|++|+|||+++..+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999884
No 427
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=85.14 E-value=0.53 Score=51.48 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+.|+|++|+||||+|+.|+ .+++
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~ 100 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGA 100 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCC
Confidence 468999999999999999999 4553
No 428
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=85.05 E-value=1.9 Score=42.73 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||++...+...
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999753
No 429
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=84.98 E-value=0.71 Score=58.03 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
++.....+..++. ...+|+.||||||||+++..++..+.
T Consensus 358 n~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~ 396 (800)
T 2wjy_A 358 NHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLA 396 (800)
T ss_dssp CHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3444455555443 24689999999999999888877664
No 430
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=84.92 E-value=2.1 Score=50.58 Aligned_cols=115 Identities=12% Similarity=0.107 Sum_probs=47.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc-cccccCCCccceEEeCCCCCCCHHHHHHHHHH-----Hhh
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS-CISHDRGKSRNIKEVGPVGNFDFESILDLLDN-----MVT 518 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~-c~~i~~g~~~dviEIdaas~~~vdeIreLle~-----a~~ 518 (1152)
.++|.|++|+|||++...|...-... ....|...... ...+... ...+..+|.++... ..+.++. ...
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~~a~--vs~~~gtT~d~~~~~i~~~-g~~l~liDT~G~~~---~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQERAI--VSHMPGTTRDYIEECFIHD-KTMFRLTDTAGLRE---AGEEIEHEGIRRSRM 308 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC--------------------CEEEEET-TEEEEEEC-----------------------C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCCceEEEEEEEEEEC-CeEEEEEECCCCCc---chhHHHHHHHHHHHh
Confidence 48999999999999999987541110 00011000000 0001111 12345555544322 2222222 111
Q ss_pred CCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 519 SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 519 ~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
.-..++.-++++|--+............+++... +..+|++.|..|.
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-~~piIvV~NK~Dl 355 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHP-AAKFLTVANKLDR 355 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-TSEEEEEEECTTS
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-CCCEEEEEECcCC
Confidence 2223455677788666555433334444555433 4556666676663
No 431
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=84.87 E-value=0.24 Score=50.66 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.-++|.|++|+|||+++..+...
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999888753
No 432
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=84.78 E-value=0.52 Score=54.81 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=24.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|.||+|+|||++|..||+.++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~ 29 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGE 29 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEE
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCe
Confidence 468899999999999999999998754
No 433
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=84.70 E-value=2.8 Score=51.61 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=15.9
Q ss_pred CCCCCceEEEEeCCCCCCHH
Q 036794 520 RPPSQYRIFVFDDCDTLSPD 539 (1152)
Q Consensus 520 P~~a~~kVVIIDEID~Ls~e 539 (1152)
+.....++|||||+|.+...
T Consensus 328 ~~l~~l~lvViDEaH~~~~~ 347 (673)
T 2wv9_A 328 LRVPNYNLFVMDEAHFTDPA 347 (673)
T ss_dssp SCCCCCSEEEEESTTCCCHH
T ss_pred cccccceEEEEeCCcccCcc
Confidence 44567899999999999543
No 434
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=84.68 E-value=0.52 Score=50.21 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=25.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
..+.|.|++|+|||++|+.||+.+++..
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~ 42 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHF 42 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcE
Confidence 3789999999999999999999998764
No 435
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=84.56 E-value=0.6 Score=53.81 Aligned_cols=42 Identities=12% Similarity=0.280 Sum_probs=24.2
Q ss_pred CCCceEEEEeCCCCCCHHH-HHHHHHHHhh---CCCCEEEEEEcCC
Q 036794 522 PSQYRIFVFDDCDTLSPDS-WSAISKVVDR---APRRVVFILVSSS 563 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~ea-qnaLLklLEe---pp~~VifILaTN~ 563 (1152)
....++|||||+|.+.... ...+.+++.. .+..-+++++++-
T Consensus 201 l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~ 246 (434)
T 2db3_A 201 FEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATF 246 (434)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCC
T ss_pred cccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccC
Confidence 3566899999999875432 2344444443 3334444455443
No 436
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=84.47 E-value=0.47 Score=47.35 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998754
No 437
>2aya_A DNA polymerase III subunit TAU; KH-fold, C-terminus of polymerase III TAU subunit, transferase; HET: DNA; NMR {Escherichia coli}
Probab=84.43 E-value=2.7 Score=41.02 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=52.1
Q ss_pred HHHHHHHHHhccchHHHHHHhcCeEeEEecCCCCeEEEEeCCchhhhhHHHhHHHHHHHHHHHhCCcEEEEEEEec
Q 036794 869 EIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCES 944 (1152)
Q Consensus 869 ~iW~~vl~~~~~~~l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~~e~~~~~Ie~~~~~vlg~~v~v~i~~~~ 944 (1152)
+-|..++.++.-..+-.-|..++ .+... ...+.+.+.....-...+..+..|+.+|...||.+|+|.|.+..
T Consensus 24 d~W~~lv~~L~l~gl~~qLA~ns-~~~~~---~~~~~L~l~~~~~hL~~~~~~~~L~~ALs~~~G~~v~L~i~~g~ 95 (128)
T 2aya_A 24 DPWAAQVSQLSLPKLVEQVALNA-WKEES---DNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 95 (128)
T ss_dssp CHHHHHHHHHTCCSHHHHHHHTE-EEEEC---SSEEEEEECGGGTTTCCHHHHHHHHHHHHHHHSSCCEEEEEECC
T ss_pred CcHHHHHHHcCCcHHHHHHHHHH-hhhee---CCEEEEEECHHHHHhCCHHHHHHHHHHHHHHHCCCEEEEEEECC
Confidence 45999999998554444445566 54442 35788888865433345667899999999999999999987643
No 438
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=84.42 E-value=0.53 Score=57.01 Aligned_cols=33 Identities=24% Similarity=0.196 Sum_probs=22.6
Q ss_pred CcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHH
Q 036794 425 GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLA 464 (1152)
.|..++..+. .++ .+|+.+|+|+|||.+....+
T Consensus 48 ~Q~~~i~~il----~g~---d~lv~~pTGsGKTl~~~lpa 80 (591)
T 2v1x_A 48 LQLETINVTM----AGK---EVFLVMPTGGGKSLCYQLPA 80 (591)
T ss_dssp THHHHHHHHH----TTC---CEEEECCTTSCTTHHHHHHH
T ss_pred HHHHHHHHHH----cCC---CEEEEECCCChHHHHHHHHH
Confidence 4666665543 232 37899999999998765444
No 439
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=84.37 E-value=0.46 Score=49.09 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999998753
No 440
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=84.21 E-value=0.56 Score=46.87 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+|+||.|+|||+++++|.-.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 6789999999999999999887763
No 441
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=84.13 E-value=1 Score=46.39 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 427 NLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 427 e~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+...+.+...+...+. ..++|.|.+|+|||+++..++....
T Consensus 23 ~~~a~~~r~~~~~~~~-~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGV-VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHHTTC-EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCC-eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3455666666555443 4678899999999999999988764
No 442
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=83.97 E-value=0.28 Score=60.58 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=14.8
Q ss_pred cEEEEEcCCCchHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCA 460 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlA 460 (1152)
..+|+.||+|+|||+.|
T Consensus 156 k~vlv~apTGSGKT~~a 172 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTYHA 172 (677)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 47899999999999854
No 443
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=83.76 E-value=0.6 Score=48.58 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
+.++||+|++|+|||++|..+.+.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 357999999999999999999874
No 444
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=83.74 E-value=0.68 Score=55.27 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|+|.||+||||+|+.|++.++..
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3478999999999999999999998754
No 445
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=83.72 E-value=0.68 Score=47.46 Aligned_cols=26 Identities=19% Similarity=0.186 Sum_probs=23.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+.|.|++|+||||++..++..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 46899999999999999999998753
No 446
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=83.67 E-value=3.8 Score=44.13 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=17.8
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLA 464 (1152)
.+++.|++|+|||++...|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999998863
No 447
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=83.64 E-value=0.56 Score=48.84 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=25.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSL 472 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~ 472 (1152)
..+.|.|+.|+|||++++.||+.++..+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 46899999999999999999999987643
No 448
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=83.58 E-value=3.3 Score=48.90 Aligned_cols=20 Identities=30% Similarity=0.174 Sum_probs=16.0
Q ss_pred CcEEEEEcCCCchHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARI 462 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARa 462 (1152)
...+|+.+|+|+|||.++-.
T Consensus 111 ~~~~lv~apTGsGKTl~~~l 130 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFAFLI 130 (563)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCCccHHHHH
Confidence 34689999999999986543
No 449
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=83.49 E-value=1.1 Score=57.81 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLA 464 (1152)
+..++|+||.|.||||+.+.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4679999999999999999993
No 450
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=83.39 E-value=3.6 Score=40.14 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 451
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=83.01 E-value=0.74 Score=54.95 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 427 NLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 427 e~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..++..|...+..+. .++|.||+|+||||++++++..+.
T Consensus 247 ~~~l~~l~~~v~~g~---~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 247 SGVLAYLWLAIEHKF---SAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp HHHHHHHHHHHHTTC---CEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHhCCC---EEEEECCCCCCHHHHHHHHHhhCC
Confidence 456677777777654 389999999999999999987664
No 452
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=83.00 E-value=0.78 Score=57.66 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 427 NLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 427 e~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+.....+..++. ...+|+.||||||||+++..+...+.
T Consensus 363 ~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~ 400 (802)
T 2xzl_A 363 SSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLS 400 (802)
T ss_dssp HHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHH
Confidence 444444444432 34689999999999998877766553
No 453
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=82.96 E-value=0.75 Score=47.10 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=22.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+.|.|++|+||||++..+...+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 4689999999999999999998764
No 454
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=82.85 E-value=0.78 Score=51.21 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+..+.|.||+|+||||+++.|+..+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34557889999999999999999998764
No 455
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=82.80 E-value=0.66 Score=51.24 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||||+|||++|..++...
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998763
No 456
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=82.79 E-value=0.73 Score=52.61 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.||+|+||||++++++..+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 447899999999999999999998764
No 457
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=82.75 E-value=0.77 Score=51.01 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+.|.||.|+||||+++.|+..+..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999998753
No 458
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=82.70 E-value=0.84 Score=50.81 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..+.|.||.|+||||+++.|+..+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 458899999999999999999988754
No 459
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=82.66 E-value=0.44 Score=47.98 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||++...+...
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988743
No 460
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=82.64 E-value=2.8 Score=49.75 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=22.4
Q ss_pred CcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHH
Q 036794 425 GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLA 464 (1152)
.|.+++..+. .++ .+|+.+|+|+|||.++...+
T Consensus 29 ~Q~~~i~~il----~g~---d~lv~apTGsGKTl~~~lp~ 61 (523)
T 1oyw_A 29 GQEEIIDTVL----SGR---DCLVVMPTGGGKSLCYQIPA 61 (523)
T ss_dssp THHHHHHHHH----TTC---CEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCC---CEEEECCCCcHHHHHHHHHH
Confidence 4666655443 333 37899999999998765544
No 461
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=82.57 E-value=0.66 Score=48.92 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=22.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+.|.|++|+||||+++.|++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4588999999999999999999974
No 462
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=82.57 E-value=4.4 Score=46.09 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
.+.|.|++|+||||+...|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999754
No 463
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=82.52 E-value=0.66 Score=56.76 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.+..++|+|.+|+||||+|+.|++.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999998
No 464
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=82.48 E-value=4.4 Score=47.31 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.|+.|+||||++..||..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 457889999999999999999998754
No 465
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=82.45 E-value=0.78 Score=55.51 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=26.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 440 RKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 440 gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
++.+..++|+|++|+||||+|++|++.++.
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 344567999999999999999999999874
No 466
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=82.40 E-value=2.8 Score=48.81 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.+.|.||+|+||||+++.|+...
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999997653
No 467
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=82.40 E-value=0.75 Score=55.42 Aligned_cols=43 Identities=30% Similarity=0.376 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHH-hCCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 427 NLVAQALSNAVM-RRKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 427 e~v~q~Lk~aL~-~gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+...+..... ....+..+.|.|++|+||||++++|+..+..
T Consensus 352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 344444444331 1233457899999999999999999999873
No 468
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=82.36 E-value=4 Score=43.17 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAk 465 (1152)
..++|.|++|+|||++...|..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998864
No 469
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=82.33 E-value=3.6 Score=45.27 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
.+.|.|++|+||||+..+|...
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5889999999999999999754
No 470
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=82.30 E-value=2.8 Score=53.99 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=15.7
Q ss_pred EEEEEcCCCchHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARI 462 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARa 462 (1152)
.+|+.+|+|+|||.++..
T Consensus 103 ~vLV~apTGSGKTlva~l 120 (1010)
T 2xgj_A 103 SVLVSAHTSAGKTVVAEY 120 (1010)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred CEEEECCCCCChHHHHHH
Confidence 589999999999998744
No 471
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=82.26 E-value=3.7 Score=45.31 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhCCcEEEEEEEecccccc
Q 036794 921 KDQILQAFESVLGSPLTIEIRCESKIDTQ 949 (1152)
Q Consensus 921 ~~~Ie~~~~~vlg~~v~v~i~~~~~~d~~ 949 (1152)
...-..-|+++||++|.+.+.+.-+++-+
T Consensus 267 ~~~ar~~~~~~~~~~v~l~l~vkv~~~w~ 295 (308)
T 3iev_A 267 GKRARQELELILGRPVYLELWVKVVPDWR 295 (308)
T ss_dssp HHHHHHHHHHHHTSCEEEEEEEEECTTGG
T ss_pred HHHHHHHHHHHhCCceEEEEEEEECCCcc
Confidence 34445667888999999998887777654
No 472
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=82.12 E-value=2.8 Score=43.73 Aligned_cols=20 Identities=45% Similarity=0.712 Sum_probs=18.0
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLA 464 (1152)
-++|.|++|+|||++...+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999998875
No 473
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=82.09 E-value=0.46 Score=52.35 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=19.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+.|+||+|+||||+|+.|++.++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999876
No 474
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=82.09 E-value=0.84 Score=48.14 Aligned_cols=28 Identities=32% Similarity=0.584 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..+.|.|++|+||||.++.|++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4568899999999999999999998743
No 475
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=82.03 E-value=0.78 Score=56.40 Aligned_cols=18 Identities=28% Similarity=0.193 Sum_probs=15.9
Q ss_pred cEEEEEcCCCchHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCAR 461 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlAR 461 (1152)
..+|++||+|+|||+++.
T Consensus 40 ~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAE 57 (720)
T ss_dssp CEEEEECCGGGCHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 468999999999999884
No 476
>2e0g_A Chromosomal replication initiator protein DNAA; domain structure, structural genomics, NPPSFA; NMR {Escherichia coli K12}
Probab=81.81 E-value=2.8 Score=39.33 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=52.8
Q ss_pred HHHHHHHHHhccc----hHHHHHHhcCeEeEEecCCCCeEEEEeCCchhhhhH-HHhHHHHHHHHHHHhCCc-EEEEEEE
Q 036794 869 EIWLEVLNRIQNN----GTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKA-EKFKDQILQAFESVLGSP-LTIEIRC 942 (1152)
Q Consensus 869 ~iW~~vl~~~~~~----~l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~~-e~~~~~Ie~~~~~vlg~~-v~v~i~~ 942 (1152)
++|.+||+.++.. ..+..+ ..-++ .+.. .++.|...+...+.-. +++...|+.++..++|.+ +.|.|.+
T Consensus 3 ~~W~~vl~~Lk~~l~~~~f~tWi-~pl~~-~~~~---~~l~l~vPn~F~~~wie~~y~~~I~~~l~~~~g~~~~~i~~~v 77 (107)
T 2e0g_A 3 SLWQQCLARLQDELPATEFSMWI-RPLQA-ELSD---NTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEV 77 (107)
T ss_dssp CHHHHHHHHHHHHCSCCHHHHTT-TTSEE-EECS---SEEEEEESSHHHHHHHHHTHHHHHHHHHHHHTSSSCCEECCEE
T ss_pred HHHHHHHHHHHHHCCHHHHHHHH-HhCcC-cccC---CEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHhCCCceeEEEEE
Confidence 3799999999743 123334 34455 4433 5789999999888864 457999999999999987 7888777
Q ss_pred eccc
Q 036794 943 ESKI 946 (1152)
Q Consensus 943 ~~~~ 946 (1152)
..+.
T Consensus 78 ~~~~ 81 (107)
T 2e0g_A 78 GTKP 81 (107)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 5433
No 477
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=81.78 E-value=3.1 Score=51.26 Aligned_cols=40 Identities=25% Similarity=0.532 Sum_probs=25.9
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhh---CCCCEEEEEEcC
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDR---APRRVVFILVSS 562 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEe---pp~~VifILaTN 562 (1152)
.+.++|||||+|++.......|..+++. .....+|++.++
T Consensus 317 ~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT 359 (666)
T 3o8b_A 317 GAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATAT 359 (666)
T ss_dssp TSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESS
T ss_pred CcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCC
Confidence 4578999999999987764444444444 334445655554
No 478
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=81.67 E-value=2.8 Score=42.16 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLA 464 (1152)
-++|.|++|+|||+++..+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999884
No 479
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=81.60 E-value=1.8 Score=56.20 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=17.0
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
.+|++||+|+|||.++-..+.
T Consensus 201 dvLV~ApTGSGKTlva~l~i~ 221 (1108)
T 3l9o_A 201 SVLVSAHTSAGKTVVAEYAIA 221 (1108)
T ss_dssp CEEEECCSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHH
Confidence 489999999999988755443
No 480
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=81.53 E-value=2.3 Score=46.12 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
.++|.|.+|+|||++..+|...
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999654
No 481
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=81.46 E-value=0.91 Score=50.17 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+..+.|.||+|+||||+++.|+..+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3345788999999999999999998875
No 482
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=80.73 E-value=1 Score=54.07 Aligned_cols=43 Identities=28% Similarity=0.370 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHH-hCCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 427 NLVAQALSNAVM-RRKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 427 e~v~q~Lk~aL~-~gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.++...|..... .++.+..++|+|++|+||||+|+.|++.++.
T Consensus 355 ~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 355 PEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 455555555542 2344567899999999999999999998874
No 483
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=80.69 E-value=1.5 Score=56.40 Aligned_cols=22 Identities=18% Similarity=0.012 Sum_probs=16.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAk 465 (1152)
..+|+.+|+|+|||+++.....
T Consensus 55 ~~vlv~apTGsGKTlv~~~~i~ 76 (997)
T 4a4z_A 55 DSVFVAAHTSAGKTVVAEYAIA 76 (997)
T ss_dssp CEEEEECCTTSCSHHHHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHH
Confidence 3589999999999986544433
No 484
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=80.62 E-value=6.3 Score=48.64 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAk 465 (1152)
...++|.|++|+|||++..+|..
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg 91 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIG 91 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34589999999999999999974
No 485
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=80.59 E-value=0.83 Score=49.15 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=22.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
+=|.|+||+||||.|+.|++.++...
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~ 36 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQ 36 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCe
Confidence 56899999999999999999987553
No 486
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=80.35 E-value=0.43 Score=63.07 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+.|.||.|+||||+++.|.+.+.
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cEEEEEecCCCcHHHHHHHhccccc
Confidence 4688999999999999999987643
No 487
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=80.32 E-value=1 Score=50.84 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=23.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..+.|.||+|+||||+++.|+..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 358899999999999999999987643
No 488
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=80.28 E-value=4.5 Score=44.52 Aligned_cols=21 Identities=29% Similarity=0.467 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
-++|.|++|+|||++...+..
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~ 25 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFS 25 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999998754
No 489
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=80.27 E-value=1.1 Score=47.70 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+..+.|.|++|+||||+++.+++.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34567899999999999999999999875
No 490
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=80.24 E-value=1.4 Score=50.03 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 431 QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 431 q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+.-.+..|. .++|.||+|+||||++++++..+.
T Consensus 166 ~~l~~~i~~G~---~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 166 SFLRRAVQLER---VIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHHHTTC---CEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHhcCC---EEEEECCCCCCHHHHHHHHHhcCC
Confidence 45555566554 489999999999999999987654
No 491
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=80.16 E-value=1 Score=52.81 Aligned_cols=28 Identities=32% Similarity=0.347 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|.|.+|+||||+++.|++.++..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3478999999999999999999998754
No 492
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=80.09 E-value=0.87 Score=46.46 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.+.|.|++|+||||+++.|+..+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5789999999999999999998764
No 493
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=80.06 E-value=0.37 Score=49.57 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
-++|.|++|+|||+++..+..
T Consensus 17 ki~v~G~~~~GKSsli~~~~~ 37 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLT 37 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998443
No 494
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=80.01 E-value=1.1 Score=51.31 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..+.|.||.|+||||+++.|+..+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 348999999999999999999998753
No 495
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=79.82 E-value=0.45 Score=62.88 Aligned_cols=42 Identities=21% Similarity=0.434 Sum_probs=30.9
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
+.+|++|||+-. +..+....+.+.|++...+..+|+++.++.
T Consensus 1235 ~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLs 1277 (1321)
T 4f4c_A 1235 NPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLN 1277 (1321)
T ss_dssp CCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSS
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHH
Confidence 357999999854 455566678888888666667777787665
No 496
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=79.82 E-value=5.2 Score=46.53 Aligned_cols=114 Identities=13% Similarity=0.118 Sum_probs=52.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCC-----HHHHHHHHHHHhh
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFD-----FESILDLLDNMVT 518 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~-----vdeIreLle~a~~ 518 (1152)
+.++|.|.+|+|||++...|...-... ....|.................+..+|.++... .+.++.....+..
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~--v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISI--VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcc--cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 368999999999999999985421110 011111110000011111122345555544221 3344444433322
Q ss_pred CCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 519 SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 519 ~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
. +..-++++|--+.+... ...+.++|... +..+|++.|..|
T Consensus 102 ~---ad~il~VvD~~~~~~~~-d~~l~~~l~~~--~~pvilV~NK~D 142 (456)
T 4dcu_A 102 E---ADVIIFMVNGREGVTAA-DEEVAKILYRT--KKPVVLAVNKLD 142 (456)
T ss_dssp H---CSEEEEEEESSSCSCHH-HHHHHHHHTTC--CSCEEEEEECC-
T ss_pred h---CCEEEEEEeCCCCCChH-HHHHHHHHHHc--CCCEEEEEECcc
Confidence 2 34456667754444443 34677777663 334555566665
No 497
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=79.77 E-value=3.9 Score=48.82 Aligned_cols=21 Identities=29% Similarity=0.105 Sum_probs=16.5
Q ss_pred CcEEEEEcCCCchHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIF 463 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaL 463 (1152)
...+|+.+|+|+|||.++-..
T Consensus 60 ~~dvlv~apTGsGKTl~~~lp 80 (579)
T 3sqw_A 60 DHDVIARAKTGTGKTFAFLIP 80 (579)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHH
Confidence 346899999999999865443
No 498
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=79.72 E-value=3.8 Score=48.69 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=28.3
Q ss_pred CcHHHHHHHHHHHH---hCCC-----CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 425 GQNLVAQALSNAVM---RRKV-----GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~---~gri-----~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
|.+.+...++.... .+.. ..-++|.|.+|+|||++...+...
T Consensus 15 g~~~i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~ 64 (535)
T 3dpu_A 15 GKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGE 64 (535)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHHHHhcC
Confidence 44556666655554 1221 135889999999999999998754
No 499
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=79.69 E-value=0.46 Score=50.90 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.+..++|.|++|+||||+++.|++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345789999999999999999998873
No 500
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=79.60 E-value=0.95 Score=48.29 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=29.7
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCC--CCEEEEEEcCCCC
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAP--RRVVFILVSSSLD 565 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp--~~VifILaTN~~d 565 (1152)
+.+++|+||.-. |.......++++|.+.. ....+|++|.+++
T Consensus 163 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 163 NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 467999999754 56677777777776642 2567788888765
Done!