BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036799
(166 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255556021|ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus communis]
gi|223541708|gb|EEF43256.1| tfiih, polypeptide, putative [Ricinus communis]
Length = 451
Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 107/132 (81%), Positives = 118/132 (89%), Gaps = 6/132 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S QGFVVVETNFRMYAYSTSKLH EI+RLFS++EYQLPNL+VGA TKESL +AFENGIT
Sbjct: 293 SRKQGFVVVETNFRMYAYSTSKLHCEIMRLFSRVEYQLPNLVVGAMTKESLYSAFENGIT 352
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
AEQ QNAHPRVA+RIPS+PENV DQIRLWESD+NRVEMTPAH YDEFPSRDVFEA
Sbjct: 353 AEQIISFLQQNAHPRVAERIPSVPENVTDQIRLWESDMNRVEMTPAHLYDEFPSRDVFEA 412
Query: 155 ACDYARDRSGLL 166
AC++ARD +GLL
Sbjct: 413 ACNFARDWNGLL 424
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 38/93 (40%), Gaps = 49/93 (52%)
Query: 1 MPSGIIARLPTSEDLEAYAIGQWE------------------------------------ 24
+ S I RLPT E+L+ YA+GQWE
Sbjct: 125 LASNIAVRLPTLEELDTYALGQWECFLLHLINSGHAERSTNFSSSMMKIFQRGLLTQRDK 184
Query: 25 -------------LMDTNAQLWYIVREYISNSQ 44
LMDTNAQLWYI+REYISNS+
Sbjct: 185 EAPRLTESGFQFLLMDTNAQLWYIIREYISNSE 217
>gi|449433857|ref|XP_004134713.1| PREDICTED: general transcription factor IIH subunit 4-like [Cucumis
sativus]
Length = 451
Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/132 (81%), Positives = 118/132 (89%), Gaps = 6/132 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S GFVVVETNFRMYAYSTSKLH EILRLFS+IEYQLPNLIVGA TKESL NAF+NGIT
Sbjct: 293 SRKLGFVVVETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGIT 352
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
AEQ QNAHPRVA+RIPS+PENV DQIRLWESDLNRV++TPAH+YDEFPSR+VFEA
Sbjct: 353 AEQIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEA 412
Query: 155 ACDYARDRSGLL 166
ACDYAR+ +GLL
Sbjct: 413 ACDYAREWNGLL 424
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 39/93 (41%), Gaps = 49/93 (52%)
Query: 1 MPSGIIARLPTSEDLEAYAIGQWE------------------------------------ 24
MPS I RLP+ EDLEAYA+ QWE
Sbjct: 125 MPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLSQRDK 184
Query: 25 -------------LMDTNAQLWYIVREYISNSQ 44
LM+TNAQLWYI+REYISN++
Sbjct: 185 EAPRLTESGFQFLLMETNAQLWYIIREYISNAE 217
>gi|224077128|ref|XP_002305144.1| predicted protein [Populus trichocarpa]
gi|222848108|gb|EEE85655.1| predicted protein [Populus trichocarpa]
Length = 449
Score = 218 bits (556), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 102/132 (77%), Positives = 117/132 (88%), Gaps = 6/132 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S QG+VVVETNFR+YAYS+SKLH EILRLFSKIEYQLPNLIVGA TKESL AFENGIT
Sbjct: 291 SRKQGYVVVETNFRLYAYSSSKLHCEILRLFSKIEYQLPNLIVGAITKESLYTAFENGIT 350
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
++Q QNAHPRVA+R+PS+PENV DQIRLWE+DLNRVE+TP+H+YDEFPSRD FEA
Sbjct: 351 SDQIISFLQQNAHPRVAERLPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDTFEA 410
Query: 155 ACDYARDRSGLL 166
ACD+AR+ +GLL
Sbjct: 411 ACDFAREWNGLL 422
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 22 QWELMDTNAQLWYIVREYISNSQ 44
Q+ LMDTNAQLWYI+REYI+NS+
Sbjct: 193 QFLLMDTNAQLWYIIREYITNSE 215
>gi|147854406|emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]
Length = 451
Score = 218 bits (556), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 103/132 (78%), Positives = 114/132 (86%), Gaps = 6/132 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S QGFVVVETNFR+YAYS+SKLH EILRLFS++EYQLPNLIVGA TKESL NAFENGIT
Sbjct: 293 SRKQGFVVVETNFRLYAYSSSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFENGIT 352
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
AEQ QNAHPRVA+R P++PENV DQIRLWE+DLNRVE P+H YDEFPSRDVFEA
Sbjct: 353 AEQIISFLQQNAHPRVAERTPAVPENVTDQIRLWETDLNRVETMPSHLYDEFPSRDVFEA 412
Query: 155 ACDYARDRSGLL 166
ACD+AR+ GLL
Sbjct: 413 ACDFAREYGGLL 424
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 40/93 (43%), Gaps = 49/93 (52%)
Query: 1 MPSGIIARLPTSEDLEAYAIGQWE------------------------------------ 24
MPS I RLP+ +DLEAYA+GQWE
Sbjct: 125 MPSNITVRLPSLDDLEAYALGQWECFLLQLISSTQTEKLTNFSSSLMKVFQRGLLTQREK 184
Query: 25 -------------LMDTNAQLWYIVREYISNSQ 44
LMDTNAQLWYI+REYISNS+
Sbjct: 185 EAPRLTESGFQFLLMDTNAQLWYIMREYISNSE 217
>gi|356548733|ref|XP_003542754.1| PREDICTED: general transcription factor IIH subunit 4-like [Glycine
max]
Length = 451
Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 105/132 (79%), Positives = 116/132 (87%), Gaps = 6/132 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S QGFVVVETNFR+YAYSTSKLH EILRLFS++EYQLPNLIVGA TKESL +AFENGIT
Sbjct: 293 SRKQGFVVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYSAFENGIT 352
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
AEQ QNAHPRVA+RIPS+PENV +QIRLWE+DLNRVEMT A+YYDEFPSRDVFE
Sbjct: 353 AEQIITFLQQNAHPRVAERIPSVPENVTEQIRLWEADLNRVEMTDAYYYDEFPSRDVFEG 412
Query: 155 ACDYARDRSGLL 166
ACD AR+ +GLL
Sbjct: 413 ACDCAREWNGLL 424
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 39/93 (41%), Gaps = 49/93 (52%)
Query: 1 MPSGIIARLPTSEDLEAYAIGQWE------------------------------------ 24
MPS I RLPT E+LEAYA+ QWE
Sbjct: 125 MPSNITVRLPTLENLEAYALEQWECFLLQLISPSQVEKPLNISSSLMKVFQRRILSYRDK 184
Query: 25 -------------LMDTNAQLWYIVREYISNSQ 44
LMDTNAQLWYI+REYISNS+
Sbjct: 185 EAPKLTESGFQFLLMDTNAQLWYIIREYISNSE 217
>gi|358346685|ref|XP_003637396.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355503331|gb|AES84534.1| General transcription factor IIH subunit [Medicago truncatula]
Length = 451
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 110/164 (67%), Positives = 125/164 (76%), Gaps = 17/164 (10%)
Query: 20 IGQWELMDTNAQLWYI-----------VREYISNSQGFVVVETNFRMYAYSTSKLHYEIL 68
+G +L + W+I + E S +GFVVVETNFR+YAYSTSKLH EIL
Sbjct: 261 LGLVKLQQGRKESWFIPTKLATNLSVSMTESSSRKEGFVVVETNFRVYAYSTSKLHCEIL 320
Query: 69 RLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ------QNAHPRVADRIPSIPENVC 122
RLFS++EYQLPNLIVGA TKESL NAF+NGITA+Q QNAHPRVA RIP++PENV
Sbjct: 321 RLFSRVEYQLPNLIVGAITKESLYNAFDNGITADQIVSFFRQNAHPRVAQRIPAVPENVT 380
Query: 123 DQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
DQIRLWESDLNRVEMT A+YYDEFPSRDVFE ACD AR+ SGLL
Sbjct: 381 DQIRLWESDLNRVEMTEAYYYDEFPSRDVFEGACDCAREWSGLL 424
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 38/93 (40%), Gaps = 49/93 (52%)
Query: 1 MPSGIIARLPTSEDLEAYAIGQWE------------------------------------ 24
MPS I RLPT EDLE YA+ QWE
Sbjct: 125 MPSNITVRLPTLEDLETYALEQWECFLLQLISPSHVDKTLNISSSLMKVFQRRLLSQRDR 184
Query: 25 -------------LMDTNAQLWYIVREYISNSQ 44
LMDTNAQLWYI+REYI+NS+
Sbjct: 185 EAPKLTESGFQFLLMDTNAQLWYIIREYITNSE 217
>gi|357461579|ref|XP_003601071.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355490119|gb|AES71322.1| General transcription factor IIH subunit [Medicago truncatula]
Length = 452
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/164 (66%), Positives = 125/164 (76%), Gaps = 17/164 (10%)
Query: 20 IGQWELMDTNAQLWYI-----------VREYISNSQGFVVVETNFRMYAYSTSKLHYEIL 68
+G +L + W+I + E S +GFVVVETNFR+YAYSTSKLH EIL
Sbjct: 262 LGLVKLQQGRKESWFIPTKLATNLSVSMTESSSRKEGFVVVETNFRVYAYSTSKLHCEIL 321
Query: 69 RLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ------QNAHPRVADRIPSIPENVC 122
RLFS++EYQLPNLIVGA TKESL NAF+NGITA+Q QNAHPRVA R+P++PENV
Sbjct: 322 RLFSRVEYQLPNLIVGAITKESLYNAFDNGITADQIVSFLRQNAHPRVAQRVPAVPENVT 381
Query: 123 DQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
DQIRLWESDLNRVEMT A+YYDEFPSRDVFE ACD AR+ SGLL
Sbjct: 382 DQIRLWESDLNRVEMTEAYYYDEFPSRDVFEGACDCAREWSGLL 425
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 38/93 (40%), Gaps = 49/93 (52%)
Query: 1 MPSGIIARLPTSEDLEAYAIGQWE------------------------------------ 24
MPS I RLPT EDLE YA+ QWE
Sbjct: 126 MPSNITVRLPTLEDLETYALEQWECFLLQLISPSHVDKTLNISSSLMKVFQRRLLSQRDR 185
Query: 25 -------------LMDTNAQLWYIVREYISNSQ 44
LMDTNAQLWYI+REYI+NS+
Sbjct: 186 EAPKLTESGFQFLLMDTNAQLWYIIREYITNSE 218
>gi|115461368|ref|NP_001054284.1| Os04g0680000 [Oryza sativa Japonica Group]
gi|113565855|dbj|BAF16198.1| Os04g0680000 [Oryza sativa Japonica Group]
Length = 444
Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 110/203 (54%), Positives = 132/203 (65%), Gaps = 57/203 (28%)
Query: 21 GQWELMDTNAQLWYIVREYISNS------------------------------------- 43
+++LM+TNAQLWYI+REYIS++
Sbjct: 213 SEFKLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHTLGEAYSLNTLTDVQRN 272
Query: 44 --------------QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKE 89
QGFVVVETNFRMYAYSTS+LH EILRLFS++EYQLPNLIVG+ TKE
Sbjct: 273 AIRDLAELGLVKLQQGFVVVETNFRMYAYSTSRLHCEILRLFSRVEYQLPNLIVGSITKE 332
Query: 90 SLNNAFENGITAE------QQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYY 143
SL AFENGITAE QQNAHPRVAD+IP++PENV DQIRLWE+D NRV+MT +H Y
Sbjct: 333 SLYGAFENGITAEQIISFLQQNAHPRVADKIPAVPENVTDQIRLWETDRNRVDMTLSHLY 392
Query: 144 DEFPSRDVFEAACDYARDRSGLL 166
++FPS+D+F+ CDYARD LL
Sbjct: 393 EDFPSKDMFDQCCDYARDHGCLL 415
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 1 MPSGIIARLPTSEDLEAYAIGQWELMDTNAQLWYIVREYISNS 43
+PS + ARLPT +LE++A+ QWE+ T A Y+ Y N+
Sbjct: 125 IPSSVTARLPTLAELESFALEQWEVRMTKA---YVCISYCLNA 164
>gi|90399251|emb|CAJ86205.1| B0213E10.4 [Oryza sativa Indica Group]
Length = 470
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 111/202 (54%), Positives = 131/202 (64%), Gaps = 57/202 (28%)
Query: 22 QWELMDTNAQLWYIVREYISNS-------------------------------------- 43
Q+ LM+TNAQLWYI+REYIS++
Sbjct: 242 QFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHTLGEAYSLNTLTDVQRNA 301
Query: 44 -------------QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKES 90
QGFVVVETNFRMYAYSTS+LH EILRLFS++EYQLPNLIVG+ TKES
Sbjct: 302 IRDLAELGLVKLQQGFVVVETNFRMYAYSTSRLHCEILRLFSRVEYQLPNLIVGSITKES 361
Query: 91 LNNAFENGITAE------QQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYD 144
L AFENGITAE QQNAHPRVAD+IP++PENV DQIRLWE+D NRV+MT +H Y+
Sbjct: 362 LYGAFENGITAEQIISFLQQNAHPRVADKIPAVPENVTDQIRLWETDRNRVDMTLSHLYE 421
Query: 145 EFPSRDVFEAACDYARDRSGLL 166
+FPS+D+F+ CDYARD LL
Sbjct: 422 DFPSKDMFDQCCDYARDHGCLL 443
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 1 MPSGIIARLPTSEDLEAYAIGQWELMDTNAQLWYIVREYISNS 43
+PS + ARLPT +LE++A+ QWE+ T A Y+ Y N+
Sbjct: 125 IPSSVTARLPTLAELESFALEQWEVRMTKA---YVCISYCLNA 164
>gi|356521347|ref|XP_003529318.1| PREDICTED: general transcription factor IIH subunit 4-like [Glycine
max]
Length = 451
Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 102/132 (77%), Positives = 115/132 (87%), Gaps = 6/132 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S QGFVVVETNFR+YAYSTSKLH EILRLFS++EYQLPNLIVGA TKESL +A+ENGIT
Sbjct: 293 SRKQGFVVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYSAYENGIT 352
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
AEQ QNAHPRVA+R+PS+PENV +QIRLWE+DLNRVEMT +YYDEFPSRDVFE
Sbjct: 353 AEQIVTFLQQNAHPRVAERVPSVPENVTEQIRLWEADLNRVEMTDTYYYDEFPSRDVFEG 412
Query: 155 ACDYARDRSGLL 166
ACD AR+ +GLL
Sbjct: 413 ACDCAREWNGLL 424
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 39/93 (41%), Gaps = 49/93 (52%)
Query: 1 MPSGIIARLPTSEDLEAYAIGQWE------------------------------------ 24
MPS I RLPT E+LEAYA+ QWE
Sbjct: 125 MPSNITVRLPTLENLEAYALEQWECFLLQLISPSQVEKPLNISSSLMKVFQRRILSHRDK 184
Query: 25 -------------LMDTNAQLWYIVREYISNSQ 44
LMDTNAQLWYI+REYISNS+
Sbjct: 185 EAPKLTESGFQFLLMDTNAQLWYIIREYISNSE 217
>gi|414584751|tpg|DAA35322.1| TPA: hypothetical protein ZEAMMB73_386928 [Zea mays]
Length = 451
Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 97/131 (74%), Positives = 111/131 (84%), Gaps = 6/131 (4%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
N +GFVVVETNFRMYAYSTSKLH EILRLF+++EYQLPNLIVGA TKES+ AFENGITA
Sbjct: 294 NKEGFVVVETNFRMYAYSTSKLHCEILRLFARVEYQLPNLIVGAVTKESIYGAFENGITA 353
Query: 102 EQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
EQ QNAHPRVAD+IP++PENV DQIRLWE+DLNRVEM P+H Y++FPS++ FE
Sbjct: 354 EQIISFLRQNAHPRVADKIPAVPENVTDQIRLWETDLNRVEMIPSHLYEDFPSKEWFEQC 413
Query: 156 CDYARDRSGLL 166
CDYARD LL
Sbjct: 414 CDYARDNGYLL 424
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 49/93 (52%)
Query: 1 MPSGIIARLPTSEDLEAYAIGQWE------------------------------------ 24
+P + RLPT DLEAYA+ QWE
Sbjct: 125 LPLSVTGRLPTPADLEAYALDQWECFLLQLINSSQVEKGSSFSSSMMKTFQRGLLSSRDG 184
Query: 25 -------------LMDTNAQLWYIVREYISNSQ 44
LM+TNAQLWYI+REYIS+++
Sbjct: 185 EASKLTENGFQFLLMETNAQLWYIMREYISSAE 217
>gi|242074798|ref|XP_002447335.1| hypothetical protein SORBIDRAFT_06g033130 [Sorghum bicolor]
gi|241938518|gb|EES11663.1| hypothetical protein SORBIDRAFT_06g033130 [Sorghum bicolor]
Length = 451
Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 97/131 (74%), Positives = 110/131 (83%), Gaps = 6/131 (4%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
N +GFVVVETNFRMYAYSTSKLH EILRLFS++EYQLPNLIVGA TKES+ AFENGITA
Sbjct: 294 NKEGFVVVETNFRMYAYSTSKLHCEILRLFSRVEYQLPNLIVGAVTKESIYGAFENGITA 353
Query: 102 EQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
EQ QNAHPRVAD+IP++PENV DQIRLWE+D NRVEM P+H Y++FPS++ FE
Sbjct: 354 EQIISFLRQNAHPRVADKIPTVPENVTDQIRLWETDRNRVEMIPSHLYEDFPSKEWFEQC 413
Query: 156 CDYARDRSGLL 166
CDYARD LL
Sbjct: 414 CDYARDNGYLL 424
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 49/93 (52%)
Query: 1 MPSGIIARLPTSEDLEAYAIGQWE------------------------------------ 24
+P + RLPT DLEAYA+ QWE
Sbjct: 125 LPLSVTGRLPTPADLEAYALDQWECFLLQLINSSQVEKGTSFSSSMMKTFQRGLLSSRDG 184
Query: 25 -------------LMDTNAQLWYIVREYISNSQ 44
LM+TNAQLWYI+REYIS+++
Sbjct: 185 EASKLTENGFQFLLMETNAQLWYIMREYISSAE 217
>gi|297800414|ref|XP_002868091.1| hypothetical protein ARALYDRAFT_493174 [Arabidopsis lyrata subsp.
lyrata]
gi|297313927|gb|EFH44350.1| hypothetical protein ARALYDRAFT_493174 [Arabidopsis lyrata subsp.
lyrata]
Length = 452
Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/164 (61%), Positives = 121/164 (73%), Gaps = 17/164 (10%)
Query: 20 IGQWELMDTNAQLWYIVREYISN-----------SQGFVVVETNFRMYAYSTSKLHYEIL 68
+G +L W+I + +N +GFVV+ETNFRMYAYSTSKL EIL
Sbjct: 261 LGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVVMETNFRMYAYSTSKLQCEIL 320
Query: 69 RLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ------QNAHPRVADRIPSIPENVC 122
RLF++IEYQLPNLI A TKESL NAF+NGIT++Q QN+HPR ADR+PSIPENV
Sbjct: 321 RLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFLQQNSHPRCADRVPSIPENVT 380
Query: 123 DQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
DQIRLWE+DL R+EMT AH+YDEFPS+DVFEAACD+AR+ GLL
Sbjct: 381 DQIRLWETDLKRIEMTQAHFYDEFPSKDVFEAACDFAREWGGLL 424
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 22 QWELMDTNAQLWYIVREYISNSQ 44
Q+ LMDTNAQLWYI+REYISN++
Sbjct: 195 QFLLMDTNAQLWYIIREYISNAE 217
>gi|334186626|ref|NP_001190745.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
gi|332658440|gb|AEE83840.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
Length = 482
Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 101/164 (61%), Positives = 121/164 (73%), Gaps = 17/164 (10%)
Query: 20 IGQWELMDTNAQLWYIVREYISN-----------SQGFVVVETNFRMYAYSTSKLHYEIL 68
+G +L W+I + +N +GFVV+ETNFRMYAYSTSKL EIL
Sbjct: 261 LGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVVMETNFRMYAYSTSKLQCEIL 320
Query: 69 RLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ------QNAHPRVADRIPSIPENVC 122
RLF++IEYQLPNLI A TKESL NAF+NGIT++Q QN+HPR ADR+PSIPENV
Sbjct: 321 RLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFLQQNSHPRCADRVPSIPENVT 380
Query: 123 DQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
DQIRLWE+DL R+EMT AH+YDEFPS+DVFEAACD+AR+ GLL
Sbjct: 381 DQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAREWRGLL 424
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 22 QWELMDTNAQLWYIVREYISNSQ 44
Q+ LMDTNAQLWYI+REYI N++
Sbjct: 195 QFLLMDTNAQLWYIIREYILNAE 217
>gi|42566894|ref|NP_193435.2| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
gi|51969678|dbj|BAD43531.1| unnamed protein product [Arabidopsis thaliana]
gi|115646777|gb|ABJ17114.1| At4g17020 [Arabidopsis thaliana]
gi|332658439|gb|AEE83839.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
Length = 452
Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 96/132 (72%), Positives = 112/132 (84%), Gaps = 6/132 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
+ +GFVV+ETNFRMYAYSTSKL EILRLF++IEYQLPNLI A TKESL NAF+NGIT
Sbjct: 293 ARKEGFVVMETNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGIT 352
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
++Q QN+HPR ADR+PSIPENV DQIRLWE+DL R+EMT AH+YDEFPS+DVFEA
Sbjct: 353 SDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEA 412
Query: 155 ACDYARDRSGLL 166
ACD+AR+ GLL
Sbjct: 413 ACDFAREWRGLL 424
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 22 QWELMDTNAQLWYIVREYISNSQ 44
Q+ LMDTNAQLWYI+REYI N++
Sbjct: 195 QFLLMDTNAQLWYIIREYILNAE 217
>gi|42572935|ref|NP_974564.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
gi|332658438|gb|AEE83838.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
Length = 462
Score = 205 bits (521), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 96/132 (72%), Positives = 112/132 (84%), Gaps = 6/132 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
+ +GFVV+ETNFRMYAYSTSKL EILRLF++IEYQLPNLI A TKESL NAF+NGIT
Sbjct: 293 ARKEGFVVMETNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGIT 352
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
++Q QN+HPR ADR+PSIPENV DQIRLWE+DL R+EMT AH+YDEFPS+DVFEA
Sbjct: 353 SDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEA 412
Query: 155 ACDYARDRSGLL 166
ACD+AR+ GLL
Sbjct: 413 ACDFAREWRGLL 424
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 22 QWELMDTNAQLWYIVREYISNSQ 44
Q+ LMDTNAQLWYI+REYI N++
Sbjct: 195 QFLLMDTNAQLWYIIREYILNAE 217
>gi|32487401|emb|CAE05735.1| OSJNBb0017I01.15 [Oryza sativa Japonica Group]
Length = 451
Score = 204 bits (520), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 95/131 (72%), Positives = 111/131 (84%), Gaps = 6/131 (4%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
N +GFVVVETNFRMYAYSTS+LH EILRLFS++EYQLPNLIVG+ TKESL AFENGITA
Sbjct: 294 NKEGFVVVETNFRMYAYSTSRLHCEILRLFSRVEYQLPNLIVGSITKESLYGAFENGITA 353
Query: 102 E------QQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
E QQNAHPRVAD+IP++PENV DQIRLWE+D NRV+MT +H Y++FPS+D+F+
Sbjct: 354 EQIISFLQQNAHPRVADKIPAVPENVTDQIRLWETDRNRVDMTLSHLYEDFPSKDMFDQC 413
Query: 156 CDYARDRSGLL 166
CDYARD LL
Sbjct: 414 CDYARDHGCLL 424
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 49/93 (52%)
Query: 1 MPSGIIARLPTSEDLEAYAIGQWE------------------------------------ 24
+PS + ARLPT +LE++A+ QWE
Sbjct: 125 IPSSVTARLPTLAELESFALEQWECFLLQLINSSQVERGTSFSSSMMRTFQRGLLSSRDG 184
Query: 25 -------------LMDTNAQLWYIVREYISNSQ 44
LM+TNAQLWYI+REYIS+++
Sbjct: 185 EAPRLTENGFQFLLMETNAQLWYIMREYISSAE 217
>gi|218195833|gb|EEC78260.1| hypothetical protein OsI_17944 [Oryza sativa Indica Group]
Length = 459
Score = 204 bits (520), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 95/131 (72%), Positives = 111/131 (84%), Gaps = 6/131 (4%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
N +GFVVVETNFRMYAYSTS+LH EILRLFS++EYQLPNLIVG+ TKESL AFENGITA
Sbjct: 302 NKEGFVVVETNFRMYAYSTSRLHCEILRLFSRVEYQLPNLIVGSITKESLYGAFENGITA 361
Query: 102 E------QQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
E QQNAHPRVAD+IP++PENV DQIRLWE+D NRV+MT +H Y++FPS+D+F+
Sbjct: 362 EQIISFLQQNAHPRVADKIPAVPENVTDQIRLWETDRNRVDMTLSHLYEDFPSKDMFDQC 421
Query: 156 CDYARDRSGLL 166
CDYARD LL
Sbjct: 422 CDYARDHGCLL 432
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 49/93 (52%)
Query: 1 MPSGIIARLPTSEDLEAYAIGQWE------------------------------------ 24
+PS + ARLPT +LE++A+ QWE
Sbjct: 125 IPSSVTARLPTLAELESFALEQWECFLLQLINSSQVERGTSFSSSMMRTFQRGLLSSRDG 184
Query: 25 -------------LMDTNAQLWYIVREYISNSQ 44
LM+TNAQLWYI+REYIS+++
Sbjct: 185 EAPRLTENGFQFLLMETNAQLWYIMREYISSAE 217
>gi|222629781|gb|EEE61913.1| hypothetical protein OsJ_16644 [Oryza sativa Japonica Group]
Length = 427
Score = 204 bits (520), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 95/131 (72%), Positives = 111/131 (84%), Gaps = 6/131 (4%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
N +GFVVVETNFRMYAYSTS+LH EILRLFS++EYQLPNLIVG+ TKESL AFENGITA
Sbjct: 270 NKEGFVVVETNFRMYAYSTSRLHCEILRLFSRVEYQLPNLIVGSITKESLYGAFENGITA 329
Query: 102 E------QQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
E QQNAHPRVAD+IP++PENV DQIRLWE+D NRV+MT +H Y++FPS+D+F+
Sbjct: 330 EQIISFLQQNAHPRVADKIPAVPENVTDQIRLWETDRNRVDMTLSHLYEDFPSKDMFDQC 389
Query: 156 CDYARDRSGLL 166
CDYARD LL
Sbjct: 390 CDYARDHGCLL 400
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 25/69 (36%)
Query: 1 MPSGIIARLPTSEDLEAYAIGQWE-------------------------LMDTNAQLWYI 35
+PS + ARLPT +LE++A+ QWE LM+TNAQLWYI
Sbjct: 125 IPSSVTARLPTLAELESFALEQWEVRMTKAYVCIDGEAPRLTENGFQFLLMETNAQLWYI 184
Query: 36 VREYISNSQ 44
+REYIS+++
Sbjct: 185 MREYISSAE 193
>gi|51969958|dbj|BAD43671.1| unnamed protein product [Arabidopsis thaliana]
Length = 452
Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/132 (72%), Positives = 111/132 (84%), Gaps = 6/132 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
+ +GFVV+ETNFRMYAYSTSKL EILRLF++IEYQLPNLI A TKESL NAF NGIT
Sbjct: 293 ARKEGFVVMETNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFGNGIT 352
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
++Q QN+HPR ADR+PSIPENV DQIRLWE+DL R+EMT AH+YDEFPS+DVFEA
Sbjct: 353 SDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEA 412
Query: 155 ACDYARDRSGLL 166
ACD+AR+ GLL
Sbjct: 413 ACDFAREWRGLL 424
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 22 QWELMDTNAQLWYIVREYISNSQ 44
Q+ LMDTNAQLWYI+REYI N++
Sbjct: 195 QFLLMDTNAQLWYIIREYILNAE 217
>gi|326510735|dbj|BAJ91715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 451
Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 96/164 (58%), Positives = 115/164 (70%), Gaps = 17/164 (10%)
Query: 20 IGQWELMDTNAQLWYIVREYISN-----------SQGFVVVETNFRMYAYSTSKLHYEIL 68
+G +L W+I + +N +G VVVETNFR+YAYS SKLH EIL
Sbjct: 261 LGLVKLQQGRKDSWFIPTKLATNLSSSLSDSAASKEGIVVVETNFRLYAYSASKLHCEIL 320
Query: 69 RLFSKIEYQLPNLIVGATTKESLNNAFENGITAE------QQNAHPRVADRIPSIPENVC 122
RLFS++EYQLPNLIVGA TKESL AF+NGITAE QQNAHPRV D+IP +PENV
Sbjct: 321 RLFSRVEYQLPNLIVGAITKESLYGAFDNGITAEQIISFLQQNAHPRVIDKIPIVPENVT 380
Query: 123 DQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
DQIRLWE+D NRVEM +H Y++FPS+D+FE CD+ARD LL
Sbjct: 381 DQIRLWENDRNRVEMILSHVYEDFPSKDMFEQCCDHARDNGYLL 424
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 49/93 (52%)
Query: 1 MPSGIIARLPTSEDLEAYAIGQWE------------------------------------ 24
+P + ARLPT +LE YA+ QWE
Sbjct: 125 LPFNVTARLPTLVELENYALEQWECFLLQLINSSQVEKGTTFSSSMMKTFQRGLLSSRDG 184
Query: 25 -------------LMDTNAQLWYIVREYISNSQ 44
LM+TNAQLWYI+REYIS+++
Sbjct: 185 EAAKLSENGFQFLLMETNAQLWYIMREYISSAE 217
>gi|357166758|ref|XP_003580836.1| PREDICTED: general transcription factor IIH subunit 4-like
[Brachypodium distachyon]
Length = 451
Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 90/130 (69%), Positives = 105/130 (80%), Gaps = 6/130 (4%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
+G VVVETNFR+YAYS S+LH EILRLFS++EYQLPNLIVGA TKESL AF+NGITAE
Sbjct: 295 KEGIVVVETNFRLYAYSASRLHCEILRLFSRVEYQLPNLIVGAITKESLYGAFDNGITAE 354
Query: 103 Q------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAAC 156
Q QNAHPRVAD+IP +PENV DQIRLWE+D NRV+M +H Y++FPS+D+FE C
Sbjct: 355 QIISFLKQNAHPRVADKIPVVPENVTDQIRLWETDRNRVDMVLSHVYEDFPSKDMFEQCC 414
Query: 157 DYARDRSGLL 166
D ARD LL
Sbjct: 415 DLARDNGFLL 424
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 49/93 (52%)
Query: 1 MPSGIIARLPTSEDLEAYAIGQWE------------------------------------ 24
+ S + RLPT +LE YA+ QWE
Sbjct: 125 ISSSVTGRLPTLTELENYALEQWECFLLQLINSSQVERGTSFSSSMMKTFQRGLLSSRDG 184
Query: 25 -------------LMDTNAQLWYIVREYISNSQ 44
LM+TNAQLWYI+REYIS+++
Sbjct: 185 DAPKLSENGFQFLLMETNAQLWYIMREYISSAE 217
>gi|357123176|ref|XP_003563288.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH
subunit 4-like [Brachypodium distachyon]
Length = 452
Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 89/130 (68%), Positives = 104/130 (80%), Gaps = 6/130 (4%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
+G VVVETNFR+YAYS S+LH EILRLFS++EYQLPNLIVGA TKESL AF+NGITAE
Sbjct: 296 KEGIVVVETNFRLYAYSASRLHCEILRLFSRVEYQLPNLIVGAITKESLYGAFDNGITAE 355
Query: 103 Q------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAAC 156
Q QNAHP VAD+IP +PENV DQIRLWE+D NRV+M +H Y++FPS+D+FE C
Sbjct: 356 QIISFLKQNAHPXVADKIPVVPENVTDQIRLWETDRNRVDMVLSHVYEDFPSKDLFEQCC 415
Query: 157 DYARDRSGLL 166
D ARD LL
Sbjct: 416 DLARDNGFLL 425
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 49/93 (52%)
Query: 1 MPSGIIARLPTSEDLEAYAIGQWE------------------------------------ 24
+PS + RLPT +LE YA+ QWE
Sbjct: 126 IPSSVTGRLPTLTELENYALEQWECFLLQLINSSQVERGTSFSSSMMKTFQRGLLSSRDG 185
Query: 25 -------------LMDTNAQLWYIVREYISNSQ 44
LM+TN QLWYI+REYIS+++
Sbjct: 186 DAPKLSENGFQFLLMETNVQLWYIMREYISSAE 218
>gi|167997877|ref|XP_001751645.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697626|gb|EDQ83962.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 462
Score = 168 bits (425), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 113/170 (66%), Gaps = 19/170 (11%)
Query: 16 EAYAIGQWELMDTNAQLWYIVREYISN-------------SQGFVVVETNFRMYAYSTSK 62
E A+G +L + WYI + SN S+GFVVVETNF++YAY++SK
Sbjct: 258 ELAALGLVKLQQGMKESWYIPTKLASNLSASLSESTDWQSSEGFVVVETNFKVYAYTSSK 317
Query: 63 LHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ------QNAHPRVADRIPS 116
L EILR F+++EYQLPNL+V TKES+N A +GI+AEQ ++AHP VA +IP
Sbjct: 318 LQTEILRCFTRLEYQLPNLVVATLTKESVNKALGSGISAEQIISFLRKHAHPHVAQKIPV 377
Query: 117 IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
+PE V DQ+RLWE+D NRV+ PA++YD+FP+ ++EA +ARD GLL
Sbjct: 378 VPETVSDQLRLWETDRNRVQFEPAYFYDDFPTMAIYEAVVAHARDLGGLL 427
Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 51/131 (38%), Gaps = 62/131 (47%)
Query: 5 IIARLPTSEDLEAYAIGQWE---------------------------------------- 24
+ AR+P S DLE YA+ QWE
Sbjct: 130 VAARVPNSADLENYAMKQWESVLLQLVDCAADGPAGPKNPFIIKVFQRSGLLTPENESPS 189
Query: 25 ---------LMDTNAQLWYIVREYISNSQ----------GFVVVETNFRMY--AYSTSKL 63
LMDTN+QLW +VREY+++S+ GF ++E F + AYS + L
Sbjct: 190 LTDLGFQFLLMDTNSQLWQLVREYVTSSEDRGTDSGELVGF-LLELGFHLVGEAYSVNSL 248
Query: 64 HYEILRLFSKI 74
+ ++ ++
Sbjct: 249 SPALQKVLDEL 259
>gi|302806060|ref|XP_002984780.1| hypothetical protein SELMODRAFT_121159 [Selaginella moellendorffii]
gi|302808297|ref|XP_002985843.1| hypothetical protein SELMODRAFT_123271 [Selaginella moellendorffii]
gi|300146350|gb|EFJ13020.1| hypothetical protein SELMODRAFT_123271 [Selaginella moellendorffii]
gi|300147366|gb|EFJ14030.1| hypothetical protein SELMODRAFT_121159 [Selaginella moellendorffii]
Length = 459
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 74/131 (56%), Positives = 101/131 (77%), Gaps = 6/131 (4%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
++GF++VETNFR+YAY++SKLH E L +F + EY LPN++VG+ TKES+N AF +GI+A
Sbjct: 299 QTEGFIMVETNFRVYAYTSSKLHIETLHVFVRTEYVLPNILVGSITKESVNGAFASGISA 358
Query: 102 EQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
+Q Q+AHP VA ++PS+PE VCDQIRLWESD RV+ PA+ Y+ FPS V+E+
Sbjct: 359 DQIIKFLQQHAHPFVAQKVPSVPETVCDQIRLWESDRVRVQYLPAYCYEGFPSTSVYESV 418
Query: 156 CDYARDRSGLL 166
+ARDR+GLL
Sbjct: 419 VAHARDRNGLL 429
>gi|414584750|tpg|DAA35321.1| TPA: hypothetical protein ZEAMMB73_386928 [Zea mays]
Length = 386
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 78/90 (86%), Gaps = 6/90 (6%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
N +GFVVVETNFRMYAYSTSKLH EILRLF+++EYQLPNLIVGA TKES+ AFENGITA
Sbjct: 294 NKEGFVVVETNFRMYAYSTSKLHCEILRLFARVEYQLPNLIVGAVTKESIYGAFENGITA 353
Query: 102 EQ------QNAHPRVADRIPSIPENVCDQI 125
EQ QNAHPRVAD+IP++PENV DQ+
Sbjct: 354 EQIISFLRQNAHPRVADKIPAVPENVTDQV 383
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 49/93 (52%)
Query: 1 MPSGIIARLPTSEDLEAYAIGQWE------------------------------------ 24
+P + RLPT DLEAYA+ QWE
Sbjct: 125 LPLSVTGRLPTPADLEAYALDQWECFLLQLINSSQVEKGSSFSSSMMKTFQRGLLSSRDG 184
Query: 25 -------------LMDTNAQLWYIVREYISNSQ 44
LM+TNAQLWYI+REYIS+++
Sbjct: 185 EASKLTENGFQFLLMETNAQLWYIMREYISSAE 217
>gi|384246869|gb|EIE20357.1| Tfb2-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 451
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 82/124 (66%), Gaps = 6/124 (4%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
+ GFVVVETN+R+YAY++S L +LRLF++ E LPNL VG T+ES+ A G++A+
Sbjct: 293 TDGFVVVETNYRVYAYTSSLLQTALLRLFTRCECILPNLFVGVLTRESVTGALACGLSAD 352
Query: 103 Q------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAAC 156
Q Q+AHP VA R P +PE V DQ+RLW++D RV A YD+FPS VF+ +
Sbjct: 353 QIVLYLRQHAHPHVASRTPVVPEVVADQVRLWQADTMRVRHNRAVLYDDFPSAQVFQLSA 412
Query: 157 DYAR 160
AR
Sbjct: 413 QKAR 416
>gi|296084734|emb|CBI25875.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 90/156 (57%), Gaps = 30/156 (19%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVG---ATTKESLNNA--- 94
S QGFVVVETNFR+YAYS+SKLH EILRLFS+ L + ++ ++ K +L +
Sbjct: 76 SRKQGFVVVETNFRLYAYSSSKLHCEILRLFSRYASMLFDCLLCICYSSQKGTLLDVSLI 135
Query: 95 ----------------FENGITAEQQNAH--------PRVADRIPSIPENVCDQIRLWES 130
F + ++ H +A++IP + QIRLWE+
Sbjct: 136 MYECLRTFSLGKIIFWFFSSVSTVATPCHGYLVIFTISCLAEKIPCLQFTNMSQIRLWET 195
Query: 131 DLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
DLNRVE P+H YDEFPSRDVFEAACD+AR+ GLL
Sbjct: 196 DLNRVETMPSHLYDEFPSRDVFEAACDFAREYGGLL 231
>gi|440791255|gb|ELR12502.1| TFIIH basal transcription factor complex subunit 2, putative
[Acanthamoeba castellanii str. Neff]
Length = 304
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 89/131 (67%), Gaps = 6/131 (4%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
+ +G+++V T++R+YAY++S + +L LF++IEYQLPN+++G +E++ A + GI+A
Sbjct: 137 DQEGWIIVGTDYRIYAYTSSPVKLLLLSLFTQIEYQLPNMVMGILLRENIRQAVQVGISA 196
Query: 102 EQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
Q NAHP++ P IPE++ DQ+RLWE++ R+ ++P ++YD+F S F+ A
Sbjct: 197 NQILQFLETNAHPQMKQNTPIIPESIADQLRLWEAEDRRLSLSPGYFYDDFASLAAFKKA 256
Query: 156 CDYARDRSGLL 166
YARD LL
Sbjct: 257 EKYARDVGALL 267
>gi|303272589|ref|XP_003055656.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463630|gb|EEH60908.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 476
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 83/125 (66%), Gaps = 8/125 (6%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
++VETNFR+YAY++S + EILRLF++ +Y+LPNL VG T+E++ A GI+AEQ
Sbjct: 318 IIVETNFRVYAYTSSAVEVEILRLFTRPDYKLPNLYVGMMTREAVVTALRGGISAEQIVS 377
Query: 104 ---QNAHPRVADRI-PSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPS-RDVFEAACDY 158
++AHP+ P+IP VCDQIRLW D NRV+ TP Y +FP+ +FE +
Sbjct: 378 YLRKHAHPQARKTPGPAIPATVCDQIRLWSKDENRVKYTPCVLYCDFPTGTGMFEKVAEI 437
Query: 159 ARDRS 163
A++R
Sbjct: 438 AKERG 442
>gi|145351329|ref|XP_001420034.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580267|gb|ABO98327.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 495
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 80/129 (62%), Gaps = 6/129 (4%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+G ++VETN+R+YAY++S + EILRLF++ +Y+LPNL VG T+ES+ NA G+ AEQ
Sbjct: 333 EGHIIVETNYRVYAYTSSAVEMEILRLFTRADYRLPNLYVGMLTRESVQNALRAGVDAEQ 392
Query: 104 ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 157
+AH +V + PS+P VCDQIRLW D+ R+E Y +FP F A
Sbjct: 393 IVGYIRAHAHKQVRRKKPSVPSTVCDQIRLWARDMERMEAEECVLYCDFPQAGTFYGAVV 452
Query: 158 YARDRSGLL 166
++ G L
Sbjct: 453 SEAEKRGAL 461
>gi|72074363|ref|XP_796111.1| PREDICTED: general transcription factor IIH subunit 4
[Strongylocentrotus purpuratus]
Length = 469
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 80/131 (61%), Gaps = 6/131 (4%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
+ GF+VVETNFR+YAY+ S L EIL LF + Y+ PNL V A T+ES+ A NGITA
Sbjct: 307 HKDGFIVVETNFRVYAYTESDLQVEILGLFCSMMYRFPNLSVAALTRESVQLAISNGITA 366
Query: 102 EQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
EQ +AHP + + P +P + DQ+RLWE + +R+ T Y+EF S FE
Sbjct: 367 EQILSFLRTHAHPNMRLKTPIVPPTISDQVRLWELERDRLSFTQGIIYNEFLSLHDFEVL 426
Query: 156 CDYARDRSGLL 166
DYA+D L+
Sbjct: 427 RDYAKDLGVLI 437
>gi|390370355|ref|XP_783140.3| PREDICTED: general transcription factor IIH subunit 4-like, partial
[Strongylocentrotus purpuratus]
Length = 180
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 80/131 (61%), Gaps = 6/131 (4%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
+ GF+VVETNFR+YAY+ S L EIL LF + Y+ PNL V A T+ES+ A NGITA
Sbjct: 27 HKDGFIVVETNFRIYAYTESDLQVEILGLFCSMMYRFPNLSVAALTRESVQLAISNGITA 86
Query: 102 EQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
EQ +AHP + + P +P + DQ+RLWE + +R+ T Y+EF S FE
Sbjct: 87 EQILSFLRTHAHPNMRLKTPIVPPTISDQVRLWELERDRLSFTQGIIYNEFLSLHDFEVL 146
Query: 156 CDYARDRSGLL 166
DYA+D L+
Sbjct: 147 RDYAKDLGVLI 157
>gi|440800489|gb|ELR21525.1| transcription factor tfb2 subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 465
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 88/131 (67%), Gaps = 6/131 (4%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
+ +G+++V T++R+YAY++S + +L LF++IEYQLPN+++G +E++ A + GI+A
Sbjct: 296 DQEGWIIVGTDYRIYAYTSSPVKLLLLSLFTQIEYQLPNMVMGILLRENIRQAVQVGISA 355
Query: 102 EQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
Q NAHP++ P IPE++ DQ+RLWE++ R+ ++ ++YD+F S F+ A
Sbjct: 356 NQILQFLETNAHPQMKQNTPIIPESIADQLRLWEAEDRRLSLSSGYFYDDFASLAAFKKA 415
Query: 156 CDYARDRSGLL 166
YARD L+
Sbjct: 416 EKYARDVGALI 426
>gi|307106040|gb|EFN54287.1| hypothetical protein CHLNCDRAFT_25123 [Chlorella variabilis]
Length = 458
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 84/129 (65%), Gaps = 9/129 (6%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+G+V+VE+NFR+YAY+TS + +LR+F + + LPNL VG T+ES NA + GI A+Q
Sbjct: 301 EGYVIVESNFRVYAYTTSAVQVAVLRVFVRCDALLPNLFVGTITRESATNALDTGIAADQ 360
Query: 104 ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 157
Q+AHPR A + P++ V DQIRLW +L R++ A YD+F S++++ A
Sbjct: 361 VVAFLRQHAHPRAAAKTPTV---VTDQIRLWAQELKRLQEKNATLYDKFESKELYVGAVA 417
Query: 158 YARDRSGLL 166
+AR + LL
Sbjct: 418 HARQLNALL 426
>gi|384484453|gb|EIE76633.1| hypothetical protein RO3G_01337 [Rhizopus delemar RA 99-880]
Length = 284
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 84/132 (63%), Gaps = 6/132 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S QGF+++ETN+++YAY+ S L +L LF +++ + N++ G T++S+ NA GIT
Sbjct: 123 SVDQGFIILETNYKLYAYTDSPLQIAVLNLFVQLQSRFRNMVTGVITRDSIRNALMKGIT 182
Query: 101 AE------QQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
AE Q +AHP++ P +P V DQIRLWE + NR++ TP++ Y EF + F+A
Sbjct: 183 AEQIIYYLQSHAHPQMRKETPVLPLTVVDQIRLWEMERNRLKPTPSYLYHEFNVQADFDA 242
Query: 155 ACDYARDRSGLL 166
A YARD LL
Sbjct: 243 AEKYARDLGVLL 254
>gi|348683175|gb|EGZ22990.1| hypothetical protein PHYSODRAFT_479459 [Phytophthora sojae]
Length = 490
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 84/126 (66%), Gaps = 6/126 (4%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
++Q VVVETNF++YAY+TS LH +L +F I +LPNL +G T+ESL +A +GI+A
Sbjct: 329 SAQLLVVVETNFKIYAYTTSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISA 388
Query: 102 EQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
+Q ++AHP++ P IPEN+ DQI LWE + NRV+ +D F +++ +E+
Sbjct: 389 QQIYDFLMKHAHPKMRRNSPVIPENIADQIYLWERERNRVQFMEGILFDGFNTKEDYESV 448
Query: 156 CDYARD 161
DYA+D
Sbjct: 449 RDYAKD 454
>gi|328873270|gb|EGG21637.1| general transcription factor IIH [Dictyostelium fasciculatum]
Length = 453
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 8/125 (6%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
QG++++ETNFR+YAY+ S L ++ LF K+ Y+LPNL VG T+ES+ +A +GITA+Q
Sbjct: 299 QGYLILETNFRIYAYTQSSLQISLISLFVKMLYRLPNLAVGILTRESVRSALLHGITADQ 358
Query: 104 ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 157
QNAHP + I PE V +QIRLWES+ NR+ A +D FP+ + F
Sbjct: 359 IVDFVKQNAHPNMV--ISGYPEVVFEQIRLWESERNRITYKKAVLFDSFPNAESFSKTVT 416
Query: 158 YARDR 162
+A+D+
Sbjct: 417 FAKDQ 421
>gi|147899535|ref|NP_001085110.1| general transcription factor IIH, polypeptide 4, 52kDa [Xenopus
laevis]
gi|47939830|gb|AAH72322.1| MGC83106 protein [Xenopus laevis]
Length = 455
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 83/127 (65%), Gaps = 6/127 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S+ QGF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PNL+V T+E++ A NGIT
Sbjct: 294 SHKQGFIVVETNYRIYAYTDSELQIALIALFSEMLYRFPNLVVAQVTRENVQQAIGNGIT 353
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
AEQ AHP + + P++P + DQIRLWE + +R+ + Y++F S+ FE
Sbjct: 354 AEQIIHFLRTRAHPVMLQQNPALPPTITDQIRLWELERDRLRFSEGVLYNQFLSQVDFEL 413
Query: 155 ACDYARD 161
+YARD
Sbjct: 414 LRNYARD 420
>gi|290987279|ref|XP_002676350.1| predicted protein [Naegleria gruberi]
gi|284089952|gb|EFC43606.1| predicted protein [Naegleria gruberi]
Length = 532
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 6/147 (4%)
Query: 26 MDTNAQLWYIVREYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGA 85
M T+ L + S + G+++VETN+R+YAY+ S L +L LF EY+LPN++VG
Sbjct: 357 MSTSYDLISSFGSHNSINNGYIIVETNYRVYAYTNSPLQIALLSLFIFPEYRLPNMVVGL 416
Query: 86 TTKESLNNAFENGITAEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTP 139
T+ ++ A +NGI+A Q NAHP++ + P IP+ V DQI LWE + NRV T
Sbjct: 417 ITRSTIREALKNGISAHQILQFLRLNAHPQMRLKKPVIPDTVSDQILLWEKERNRVIKTT 476
Query: 140 AHYYDEFPSRDVFEAACDYARDRSGLL 166
+ YD+F + A DYAR + LL
Sbjct: 477 SVVYDKFTNVSELNATVDYARRQGALL 503
>gi|62751795|ref|NP_001015845.1| general transcription factor IIH, polypeptide 4, 52kDa [Xenopus
(Silurana) tropicalis]
gi|58475911|gb|AAH90134.1| general transcription factor II H, polypeptide 4 [Xenopus
(Silurana) tropicalis]
gi|89272862|emb|CAJ82116.1| transcription factor tfb2 [Xenopus (Silurana) tropicalis]
gi|114107989|gb|AAI22900.1| gtf2h4 protein [Xenopus (Silurana) tropicalis]
Length = 455
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 82/127 (64%), Gaps = 6/127 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S+ QGF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PNL+V T+E++ A NGIT
Sbjct: 294 SHKQGFIVVETNYRIYAYTDSELQIALIALFSEMLYRFPNLVVAQVTRENVQQAIGNGIT 353
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
AEQ AHP + + P +P + DQIRLWE + +R+ + Y++F S+ FE
Sbjct: 354 AEQIIHFLRTRAHPVMLQQNPVLPPTITDQIRLWELERDRLRFSEGVLYNQFLSQVDFEL 413
Query: 155 ACDYARD 161
+YARD
Sbjct: 414 LRNYARD 420
>gi|308452336|ref|XP_003089005.1| hypothetical protein CRE_21072 [Caenorhabditis remanei]
gi|308243592|gb|EFO87544.1| hypothetical protein CRE_21072 [Caenorhabditis remanei]
Length = 468
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 83/133 (62%), Gaps = 9/133 (6%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
S G V+VETNFR+YAY++S L I+ LF+++ Y+ ++ VG T+ES+ A ++GITA
Sbjct: 302 SNGKVIVETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAA 361
Query: 103 Q------QNAHPR---VADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 153
Q NAHP+ + I +P V DQIRLWE + R+++ A+ Y F S D F+
Sbjct: 362 QIISFLRANAHPQCIATSGAINCLPITVADQIRLWEDERRRMDLKDAYIYSHFESEDEFQ 421
Query: 154 AACDYARDRSGLL 166
CDYA++R LL
Sbjct: 422 GVCDYAQERGILL 434
>gi|308460924|ref|XP_003092760.1| hypothetical protein CRE_20979 [Caenorhabditis remanei]
gi|308252519|gb|EFO96471.1| hypothetical protein CRE_20979 [Caenorhabditis remanei]
Length = 470
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 83/133 (62%), Gaps = 9/133 (6%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
S G V+VETNFR+YAY++S L I+ LF+++ Y+ ++ VG T+ES+ A ++GITA
Sbjct: 305 SNGKVIVETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAA 364
Query: 103 Q------QNAHPR---VADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 153
Q NAHP+ + I +P V DQIRLWE + R+++ A+ Y F S D F+
Sbjct: 365 QIISFLRANAHPQCIATSGAINCLPITVADQIRLWEDERRRMDLKDAYIYSHFESEDEFQ 424
Query: 154 AACDYARDRSGLL 166
CDYA++R LL
Sbjct: 425 GVCDYAQERGILL 437
>gi|359497087|ref|XP_002267711.2| PREDICTED: general transcription factor IIH subunit 4-like [Vitis
vinifera]
Length = 238
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 72/126 (57%), Gaps = 37/126 (29%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S QGFVVVETNFR+YAYS+SKLH EILRLFS+ + ++
Sbjct: 123 SRKQGFVVVETNFRLYAYSSSKLHCEILRLFSR-----------------------SSVS 159
Query: 101 AEQQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYAR 160
H + IRLWE+DLNRVE P+H YDEFPSRDVFEAACD+AR
Sbjct: 160 TVATPCHGYL--------------IRLWETDLNRVETMPSHLYDEFPSRDVFEAACDFAR 205
Query: 161 DRSGLL 166
+ GLL
Sbjct: 206 EYGGLL 211
>gi|395332344|gb|EJF64723.1| transcription factor Tfb2 [Dichomitus squalens LYAD-421 SS1]
Length = 506
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S+ QGF+V+ETN+R+YAY+ + L +L LF ++Y+ PNL+VG T++S+ A NGIT
Sbjct: 344 SHVQGFIVLETNYRLYAYTDNPLQIAVLNLFVTLKYRFPNLVVGQITRDSVKKALANGIT 403
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
A+Q +AHP++ P +P V DQIRLWE + NRV+ + Y F S +E
Sbjct: 404 ADQIISYLITHAHPQMRKNKPLLPVTVQDQIRLWELERNRVKSQEGYLYTAFASHADYEW 463
Query: 155 ACDYARD 161
DYA+
Sbjct: 464 VLDYAKK 470
>gi|330918142|ref|XP_003298106.1| hypothetical protein PTT_08708 [Pyrenophora teres f. teres 0-1]
gi|311328891|gb|EFQ93800.1| hypothetical protein PTT_08708 [Pyrenophora teres f. teres 0-1]
Length = 482
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 77/122 (63%), Gaps = 6/122 (4%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+GF+++ETN+R+YAY+ S + IL LF+K++++ PNL+ G TKES++ A ++GIT+ Q
Sbjct: 320 KGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKESVHKAVQSGITSAQ 379
Query: 104 ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 157
AHP++ +P IP V DQIRLWE + RVE TP + EF S +
Sbjct: 380 IISYLTTYAHPQMQKTVPYIPPTVMDQIRLWEYEGERVETTPGYLMREFSSDTEYRDVMG 439
Query: 158 YA 159
YA
Sbjct: 440 YA 441
>gi|358057347|dbj|GAA96696.1| hypothetical protein E5Q_03367 [Mixia osmundae IAM 14324]
Length = 467
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 80/129 (62%), Gaps = 6/129 (4%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
QGF+++ETN+R+YAY+ + L +L LF ++ + P L+VG T+ES+ NGI ++Q
Sbjct: 307 QGFLILETNYRVYAYTQNPLQIAVLNLFVALKSRFPGLVVGMITRESIKAGLANGIKSDQ 366
Query: 104 ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 157
+AHP++ + P +P V DQI+LWE + NRV+ P YD+F S+ ++ CD
Sbjct: 367 IIAFLTAHAHPQMRKQEPLLPPTVVDQIKLWEREKNRVKTEPCFLYDDFRSQADYDLVCD 426
Query: 158 YARDRSGLL 166
YA+ +L
Sbjct: 427 YAKQIGAVL 435
>gi|189205068|ref|XP_001938869.1| RNA polymerase II transcription factor B subunit 2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985968|gb|EDU51456.1| RNA polymerase II transcription factor B subunit 2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 482
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 77/122 (63%), Gaps = 6/122 (4%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+GF+++ETN+R+YAY+ S + IL LF+K++++ PNL+ G TKES++ A ++GIT+ Q
Sbjct: 320 KGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKESVHKAVQSGITSAQ 379
Query: 104 ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 157
AHP++ +P IP V DQIRLWE + RVE TP + EF S +
Sbjct: 380 IISYLTTYAHPQMQKTVPYIPPTVMDQIRLWEYEGERVETTPGYLMREFSSDAEYRDVMG 439
Query: 158 YA 159
YA
Sbjct: 440 YA 441
>gi|260810774|ref|XP_002600123.1| hypothetical protein BRAFLDRAFT_57175 [Branchiostoma floridae]
gi|229285409|gb|EEN56135.1| hypothetical protein BRAFLDRAFT_57175 [Branchiostoma floridae]
Length = 457
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 84/131 (64%), Gaps = 6/131 (4%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
+ +G++VVE+N+R+YAY+ S+L ++ LFS+I Y+ PN++V T++S+ A GITA
Sbjct: 296 HKEGYLVVESNYRIYAYTDSELQVALIGLFSEILYRFPNMVVANLTRDSVQEAVVRGITA 355
Query: 102 EQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
+Q NAHP+ R+P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 356 DQILHFLRVNAHPKALHRVPIVPPTISDQIRLWEMERDRLTFTEGVLYNQFLSQPDFEML 415
Query: 156 CDYARDRSGLL 166
+YA+D LL
Sbjct: 416 RNYAKDLGVLL 426
>gi|327266348|ref|XP_003217968.1| PREDICTED: general transcription factor IIH subunit 4-like [Anolis
carolinensis]
Length = 460
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 84/132 (63%), Gaps = 6/132 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
+ +QGF++VETN+R+YAY+ S+L ++ LFS++ Y+ PNL+V T+ES+ A NGIT
Sbjct: 299 TRNQGFIIVETNYRIYAYTDSELQIALIALFSEMLYRFPNLVVAQVTRESVQQAIANGIT 358
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
A+Q AHP + + P +P + DQIRLWE + +R+ + Y++F S+ FE
Sbjct: 359 ADQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFSEGVLYNQFLSQVDFEL 418
Query: 155 ACDYARDRSGLL 166
D+AR+ L+
Sbjct: 419 LRDHARELGVLI 430
>gi|403180193|ref|XP_003338499.2| hypothetical protein PGTG_19983 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166015|gb|EFP94080.2| hypothetical protein PGTG_19983 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 679
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 79/123 (64%), Gaps = 6/123 (4%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
GF+V+ETN+R+YAY+++ L +L LF + Y+ PNL+VGA T+ES+ +A NGITA+Q
Sbjct: 146 HGFLVLETNYRIYAYTSNPLQIAVLNLFLSLRYRFPNLVVGAVTRESIKSALSNGITADQ 205
Query: 104 ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 157
+AHP++ P +P V DQIRLWE + NR+ + Y++F S +++
Sbjct: 206 VIMYLHTHAHPQMRKLEPLLPPTVVDQIRLWELEKNRIRAQEGYLYEDFKSAAEYDSVIQ 265
Query: 158 YAR 160
Y+R
Sbjct: 266 YSR 268
>gi|403163300|ref|XP_003323393.2| hypothetical protein PGTG_04930 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163998|gb|EFP78974.2| hypothetical protein PGTG_04930 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 887
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 79/123 (64%), Gaps = 6/123 (4%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
GF+V+ETN+R+YAY+++ L +L LF + Y+ PNL+VGA T+ES+ +A NGITA+Q
Sbjct: 351 HGFLVLETNYRIYAYTSNPLQIAVLNLFLSLRYRFPNLVVGAVTRESIKSALSNGITADQ 410
Query: 104 ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 157
+AHP++ P +P V DQIRLWE + NR+ + Y++F S +++
Sbjct: 411 VIMYLHTHAHPQMRKLEPLLPPTVVDQIRLWELEKNRIRAQEGYLYEDFKSAAEYDSVIQ 470
Query: 158 YAR 160
Y+R
Sbjct: 471 YSR 473
>gi|336370852|gb|EGN99192.1| hypothetical protein SERLA73DRAFT_90464 [Serpula lacrymans var.
lacrymans S7.3]
gi|336383609|gb|EGO24758.1| hypothetical protein SERLADRAFT_361686 [Serpula lacrymans var.
lacrymans S7.9]
Length = 469
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 78/124 (62%), Gaps = 6/124 (4%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
SQGF+V+ETN+R+YAY+ L +L LF ++Y+ PNL+VG T+ES+ A NGI+AE
Sbjct: 309 SQGFIVLETNYRIYAYTDKPLQTAVLNLFITMKYRFPNLVVGMLTRESVKKALSNGISAE 368
Query: 103 Q------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAAC 156
Q +AHP++ P +P V DQIRLWE + NR++ + Y +F S +E
Sbjct: 369 QIISYLTTHAHPQMRKNNPLLPVTVQDQIRLWELERNRLKSEEGYLYKDFGSHADYEYVL 428
Query: 157 DYAR 160
+YA+
Sbjct: 429 NYAK 432
>gi|325181847|emb|CCA16302.1| general transcription factor IIH subunit putative [Albugo laibachii
Nc14]
Length = 473
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 82/131 (62%), Gaps = 6/131 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S S +VETNF++YAY+TS LH +L +F I +LPNL +G T+ESL +A +GI+
Sbjct: 312 SMSDLLTIVETNFKVYAYTTSTLHIAMLSVFVDIVARLPNLAIGFITRESLRSALVHGIS 371
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
A+Q ++AHPR+ P +PEN+ DQI LWE + NR++ +D F S++ FE
Sbjct: 372 AQQIYDFLLKHAHPRMKKNNPIVPENIADQIYLWEKERNRIKFLEGILFDGFNSKEEFEQ 431
Query: 155 ACDYARDRSGL 165
+YA+ + L
Sbjct: 432 VREYAQKQRFL 442
>gi|390594544|gb|EIN03954.1| transcription factor Tfb2 [Punctularia strigosozonata HHB-11173
SS5]
Length = 467
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 80/125 (64%), Gaps = 6/125 (4%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
S+GF+V+ETN+R+YAY+ + L +L LF+ + + PNL+VG T+ES+ A ++GI+AE
Sbjct: 307 SEGFIVLETNYRLYAYTDNPLQTAVLALFTTLRSRFPNLVVGQITRESVKRALQSGISAE 366
Query: 103 Q------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAAC 156
Q +AHP++ P IP V DQIRLWE + NR++ Y EF S+ +E
Sbjct: 367 QIISYLSTHAHPQMRKNNPLIPVTVQDQIRLWELEKNRLKSQEGFLYTEFASQGDYEYVL 426
Query: 157 DYARD 161
+YAR+
Sbjct: 427 NYARE 431
>gi|325181222|emb|CCA15636.1| general transcription factor IIH subunit putative [Albugo laibachii
Nc14]
Length = 1033
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 82/131 (62%), Gaps = 6/131 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S S +VETNF++YAY+TS LH +L +F I +LPNL +G T+ESL +A +GI+
Sbjct: 359 SMSDLLTIVETNFKVYAYTTSTLHIAMLSVFVDIVARLPNLAIGFITRESLRSALVHGIS 418
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
A+Q ++AHPR+ P +PEN+ DQI LWE + NR++ +D F S++ FE
Sbjct: 419 AQQIYDFLLKHAHPRMKKNNPIVPENIADQIYLWEKERNRIKFLEGILFDGFNSKEEFEQ 478
Query: 155 ACDYARDRSGL 165
+YA+ + L
Sbjct: 479 VREYAQKQRFL 489
>gi|393246879|gb|EJD54387.1| transcription factor Tfb2 [Auricularia delicata TFB-10046 SS5]
Length = 480
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 77/126 (61%), Gaps = 6/126 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
+ S GF+++ETN+R+YAY+ + L +L LF + + PNL+VG T++S+ A NGIT
Sbjct: 314 ATSGGFIILETNYRLYAYTDNPLQIAVLNLFVSFKSRFPNLVVGMVTRDSVKKALANGIT 373
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
AEQ +AHP++ P +P V DQ+RLWE + NRV+ Y +F S+ FE
Sbjct: 374 AEQIITYLSAHAHPQMRKNNPLLPVTVQDQVRLWELEKNRVKAEEGFLYMDFTSQADFEL 433
Query: 155 ACDYAR 160
DYAR
Sbjct: 434 VLDYAR 439
>gi|213402795|ref|XP_002172170.1| transcription factor TFIIH complex subunit Tfb2
[Schizosaccharomyces japonicus yFS275]
gi|212000217|gb|EEB05877.1| transcription factor TFIIH complex subunit Tfb2
[Schizosaccharomyces japonicus yFS275]
Length = 444
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 78/125 (62%), Gaps = 6/125 (4%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
+GF++VETN+R+YAY+ S L IL LF+ + + NLIVG T++S+ A ++GITAE
Sbjct: 288 GKGFIIVETNYRLYAYTDSPLQIAILGLFTNLRARFSNLIVGVITRDSIRRALQSGITAE 347
Query: 103 Q------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAAC 156
Q +AHP++ IP +P + DQI LWE + NR+ TP + +F + FE A
Sbjct: 348 QIITYLTTHAHPQMRKEIPLLPPTLVDQIYLWELERNRLRATPGILFRDFLTDKDFEKAV 407
Query: 157 DYARD 161
YA++
Sbjct: 408 QYAKE 412
>gi|301098671|ref|XP_002898428.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
gi|262105199|gb|EEY63251.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
Length = 483
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 80/121 (66%), Gaps = 6/121 (4%)
Query: 46 FVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ-- 103
VVVETNF++YAY++S LH +L +F I +LPNL +G T+ESL +A +GI+A+Q
Sbjct: 326 LVVVETNFKIYAYTSSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIY 385
Query: 104 ----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYA 159
++AHP++ P IPEN+ DQI LWE + NRV+ +D F +++ +E+ DYA
Sbjct: 386 DFLMKHAHPKMRRNSPVIPENIADQIYLWERERNRVQFLEGILFDGFNTKEDYESVRDYA 445
Query: 160 R 160
+
Sbjct: 446 K 446
>gi|320167307|gb|EFW44206.1| transcription factor tfb2 [Capsaspora owczarzaki ATCC 30864]
Length = 406
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ +G++VVETNFR+YAY+ S L +L LF + Y+ PN++ G +++S+ A G+T
Sbjct: 222 ADVKGYIVVETNFRIYAYTDSPLQLALLSLFVDLRYRFPNMVCGLLSRDSVRKALVKGLT 281
Query: 101 AEQQ------NAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
AEQ +AHP++ R P +PE + DQ+RLWE + NR+ + PA Y+ F ++ +
Sbjct: 282 AEQMIRFLRTHAHPQMRSRTPVLPETISDQLRLWELERNRLRVLPAVLYERFSNQREHDL 341
Query: 155 ACDYARD 161
Y RD
Sbjct: 342 LHHYGRD 348
>gi|242021693|ref|XP_002431278.1| TFIIH basal transcription factor complex p52 subunit, putative
[Pediculus humanus corporis]
gi|212516535|gb|EEB18540.1| TFIIH basal transcription factor complex p52 subunit, putative
[Pediculus humanus corporis]
Length = 467
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 84/127 (66%), Gaps = 7/127 (5%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
N +G++++ETN+R+YAY+ S L +L LF ++ Y+ PNL VG T++S+ AF++GITA
Sbjct: 305 NKEGYIIIETNYRVYAYTDSNLQVALLGLFCEMLYRFPNLSVGLITRDSVRQAFKSGITA 364
Query: 102 EQ------QNAHPR-VADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
EQ +AHPR +A P++P V DQI+LWE++LNR+ + Y +F S+ FEA
Sbjct: 365 EQIVGFLRLHAHPRMIAVGPPTLPPTVVDQIKLWENELNRLVYSDGVLYSQFLSQADFEA 424
Query: 155 ACDYARD 161
D A +
Sbjct: 425 LRDRANE 431
>gi|393221241|gb|EJD06726.1| transcription factor Tfb2 [Fomitiporia mediterranea MF3/22]
Length = 464
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 80/127 (62%), Gaps = 6/127 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
+ +QGF+++ETN+R+YAY+ + L +L LF ++Y+ PNL+VG+ T++S+ A NGIT
Sbjct: 301 AQAQGFIILETNYRIYAYTDNPLQTAVLNLFVTLKYRFPNLVVGSLTRDSVRKALANGIT 360
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
A+Q +AHP++ P IP V DQIRLWE + NR++ + Y F S+ +E
Sbjct: 361 ADQIIKYLTTHAHPQMRKNDPLIPVTVQDQIRLWELERNRLKSQEGYLYTAFASQADYEF 420
Query: 155 ACDYARD 161
YA+
Sbjct: 421 VLKYAKQ 427
>gi|41053973|ref|NP_956221.1| general transcription factor IIH subunit 4 [Danio rerio]
gi|39794736|gb|AAH64301.1| General transcription factor IIH, polypeptide 4 [Danio rerio]
Length = 466
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 79/126 (62%), Gaps = 6/126 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
+ GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PNL+V T+ES+ A NGIT
Sbjct: 305 TGDTGFIVVETNYRIYAYTNSELQIALVALFSEMLYRFPNLVVAQVTRESVQQAISNGIT 364
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
A+Q AHP + + P +P + DQIRLWE + +R++ T Y++F S+ FE
Sbjct: 365 AQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELEKDRLQFTEGVLYNQFLSQADFEV 424
Query: 155 ACDYAR 160
D A+
Sbjct: 425 LRDRAQ 430
>gi|453232318|ref|NP_001263825.1| Protein Y73F8A.24, isoform d [Caenorhabditis elegans]
gi|412976516|emb|CCO25635.1| Protein Y73F8A.24, isoform d [Caenorhabditis elegans]
Length = 435
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 90/150 (60%), Gaps = 11/150 (7%)
Query: 26 MDTNAQLWYIVREYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGA 85
+ TN + + E +SN G V+VETNFR+YAY++S L I+ LF+++ Y+ ++ VG
Sbjct: 245 LATNETIDDVSAEKVSN--GKVIVETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGM 302
Query: 86 TTKESLNNAFENGITAEQ------QNAHPR-VADRIP--SIPENVCDQIRLWESDLNRVE 136
T+ES+ A ++GITA Q NAHP+ +A P +P V DQIRLWE + R+
Sbjct: 303 ITRESVRGALQHGITAAQIISFLRANAHPQCIATSGPVNCLPITVADQIRLWEDERRRMN 362
Query: 137 MTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
+ A+ Y F S D F C+YAR ++ LL
Sbjct: 363 LKDAYIYSHFESEDEFHGVCEYARQQNILL 392
>gi|410911638|ref|XP_003969297.1| PREDICTED: general transcription factor IIH subunit 4-like
[Takifugu rubripes]
Length = 465
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 81/132 (61%), Gaps = 6/132 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A NGIT
Sbjct: 304 SGDSGFIVVETNYRIYAYTNSELQIALVALFSEMLYRFPNVVVAQVTRESVQQAIANGIT 363
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
A+Q AHP + + P +P + DQIRLWE + +R++ T Y++F S+ FE
Sbjct: 364 AQQIIHFLRTRAHPVMLRQTPFLPPTITDQIRLWELERDRLQFTEGVLYNQFLSQTDFEV 423
Query: 155 ACDYARDRSGLL 166
D A+ L+
Sbjct: 424 LRDRAKSLGCLV 435
>gi|392901992|ref|NP_001255864.1| Protein Y73F8A.24, isoform b [Caenorhabditis elegans]
gi|290457493|emb|CBK19514.1| Protein Y73F8A.24, isoform b [Caenorhabditis elegans]
Length = 431
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 90/150 (60%), Gaps = 11/150 (7%)
Query: 26 MDTNAQLWYIVREYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGA 85
+ TN + + E +SN G V+VETNFR+YAY++S L I+ LF+++ Y+ ++ VG
Sbjct: 241 LATNETIDDVSAEKVSN--GKVIVETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGM 298
Query: 86 TTKESLNNAFENGITAEQ------QNAHPR-VADRIP--SIPENVCDQIRLWESDLNRVE 136
T+ES+ A ++GITA Q NAHP+ +A P +P V DQIRLWE + R+
Sbjct: 299 ITRESVRGALQHGITAAQIISFLRANAHPQCIATSGPVNCLPITVADQIRLWEDERRRMN 358
Query: 137 MTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
+ A+ Y F S D F C+YAR ++ LL
Sbjct: 359 LKDAYIYSHFESEDEFHGVCEYARQQNILL 388
>gi|392901990|ref|NP_001255863.1| Protein Y73F8A.24, isoform a [Caenorhabditis elegans]
gi|26985915|emb|CAB70230.2| Protein Y73F8A.24, isoform a [Caenorhabditis elegans]
Length = 481
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 90/150 (60%), Gaps = 11/150 (7%)
Query: 26 MDTNAQLWYIVREYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGA 85
+ TN + + E +SN G V+VETNFR+YAY++S L I+ LF+++ Y+ ++ VG
Sbjct: 291 LATNETIDDVSAEKVSN--GKVIVETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGM 348
Query: 86 TTKESLNNAFENGITAEQ------QNAHPR-VADRIP--SIPENVCDQIRLWESDLNRVE 136
T+ES+ A ++GITA Q NAHP+ +A P +P V DQIRLWE + R+
Sbjct: 349 ITRESVRGALQHGITAAQIISFLRANAHPQCIATSGPVNCLPITVADQIRLWEDERRRMN 408
Query: 137 MTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
+ A+ Y F S D F C+YAR ++ LL
Sbjct: 409 LKDAYIYSHFESEDEFHGVCEYARQQNILL 438
>gi|453232316|ref|NP_001263824.1| Protein Y73F8A.24, isoform c [Caenorhabditis elegans]
gi|412976517|emb|CCO25636.1| Protein Y73F8A.24, isoform c [Caenorhabditis elegans]
Length = 485
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 90/150 (60%), Gaps = 11/150 (7%)
Query: 26 MDTNAQLWYIVREYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGA 85
+ TN + + E +SN G V+VETNFR+YAY++S L I+ LF+++ Y+ ++ VG
Sbjct: 295 LATNETIDDVSAEKVSN--GKVIVETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGM 352
Query: 86 TTKESLNNAFENGITAEQ------QNAHPR-VADRIP--SIPENVCDQIRLWESDLNRVE 136
T+ES+ A ++GITA Q NAHP+ +A P +P V DQIRLWE + R+
Sbjct: 353 ITRESVRGALQHGITAAQIISFLRANAHPQCIATSGPVNCLPITVADQIRLWEDERRRMN 412
Query: 137 MTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
+ A+ Y F S D F C+YAR ++ LL
Sbjct: 413 LKDAYIYSHFESEDEFHGVCEYARQQNILL 442
>gi|451847848|gb|EMD61155.1| hypothetical protein COCSADRAFT_97372 [Cochliobolus sativus ND90Pr]
Length = 482
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 76/122 (62%), Gaps = 6/122 (4%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+GF+++ETN+R+YAY+ S + IL LF+K++++ PNL+ G TKES++ A + GIT+ Q
Sbjct: 320 KGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKESVHKAVQAGITSAQ 379
Query: 104 ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 157
AHP++ +P IP V DQIRLWE + RVE T + EF S + +
Sbjct: 380 IISYLTTYAHPQMQKTVPYIPPTVMDQIRLWEYEGERVETTTGYLMREFGSDAEYRDVLN 439
Query: 158 YA 159
YA
Sbjct: 440 YA 441
>gi|443688956|gb|ELT91478.1| hypothetical protein CAPTEDRAFT_18660 [Capitella teleta]
Length = 463
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 75/127 (59%), Gaps = 6/127 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ GF+VVETN+R+YAY+ S L ++ LF + Y+ PN+ VG +++S+ A GIT
Sbjct: 303 ASEDGFIVVETNYRVYAYTNSSLKVALISLFCSMMYRFPNMAVGVVSRDSVREALSRGIT 362
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
AEQ +AHP R P +P V DQIRLWE + +R Y++F S+ FE
Sbjct: 363 AEQIINFLRNHAHPHTQKRKPILPPTVSDQIRLWELERDRFHFNEGVLYNQFLSQTDFEV 422
Query: 155 ACDYARD 161
DYA+D
Sbjct: 423 LRDYAKD 429
>gi|403417620|emb|CCM04320.1| predicted protein [Fibroporia radiculosa]
Length = 472
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 79/125 (63%), Gaps = 6/125 (4%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
+ +GF+V+ETN+R+YAY+ + L +L LF ++ + PNL++GA T+ES+ A NGITA
Sbjct: 311 HGEGFIVLETNYRIYAYTDNPLQIAVLNLFVTLKSRFPNLVIGAITRESVKKALANGITA 370
Query: 102 EQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
+Q +AHP++ P +P V DQIRLWE + NRV+ + Y F S+ +E
Sbjct: 371 DQIISYLTAHAHPQMHKNKPLLPVTVQDQIRLWELERNRVKSEEGYLYTSFASQADYEYV 430
Query: 156 CDYAR 160
+YA+
Sbjct: 431 LNYAK 435
>gi|451996931|gb|EMD89397.1| hypothetical protein COCHEDRAFT_1141584 [Cochliobolus
heterostrophus C5]
Length = 482
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 76/122 (62%), Gaps = 6/122 (4%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+GF+++ETN+R+YAY+ S + IL LF+K++++ PNL+ G TKES++ A + GIT+ Q
Sbjct: 320 KGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKESVHKAVQAGITSAQ 379
Query: 104 ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 157
AHP++ +P IP V DQIRLWE + RVE T + EF S + +
Sbjct: 380 IISYLTTYAHPQMQKTVPYIPPTVMDQIRLWEYEGERVETTTGYLMREFGSDAEYRDVLN 439
Query: 158 YA 159
YA
Sbjct: 440 YA 441
>gi|341886092|gb|EGT42027.1| hypothetical protein CAEBREN_00374 [Caenorhabditis brenneri]
Length = 460
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 83/133 (62%), Gaps = 9/133 (6%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
S G V+VETNFR+YAY++S L I+ LF+++ Y+ ++ VG T+ES+ A ++GITA
Sbjct: 293 SNGKVIVETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAA 352
Query: 103 Q------QNAHPR-VADRIP--SIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 153
Q NAHP+ +A P +P V DQIRLWE + R+++ ++ Y F S + F
Sbjct: 353 QIISFLRANAHPQCIATSGPVNCLPITVADQIRLWEDERRRMDLKDSYIYSNFESDEEFN 412
Query: 154 AACDYARDRSGLL 166
CDYA++R LL
Sbjct: 413 GVCDYAKERKILL 425
>gi|409048320|gb|EKM57798.1| hypothetical protein PHACADRAFT_171015 [Phanerochaete carnosa
HHB-10118-sp]
Length = 472
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 80/131 (61%), Gaps = 10/131 (7%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ QGF+++ETN+R+YAY+ + L +L LF ++ + PNL+VGA T+ES+ A NGIT
Sbjct: 306 AHGQGFIILETNYRLYAYTDNPLQIAVLNLFVTLKSRYPNLVVGAITRESVKKALTNGIT 365
Query: 101 AEQ----------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 150
A+Q +AHP++ P +P V DQIRLWE + NR++ + Y F S+
Sbjct: 366 ADQASRQIISYLTTHAHPQMRKNKPLLPVTVQDQIRLWELEKNRMKSQEGYLYTAFASQA 425
Query: 151 VFEAACDYARD 161
+E +YA+
Sbjct: 426 DYEYVLNYAKQ 436
>gi|432883135|ref|XP_004074222.1| PREDICTED: general transcription factor IIH subunit 4-like [Oryzias
latipes]
Length = 460
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 82/132 (62%), Gaps = 6/132 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
+ GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A NGIT
Sbjct: 299 TGDAGFIVVETNYRIYAYTNSELQIALVALFSEMLYRFPNVVVAHLTRESVQQAIANGIT 358
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
A+Q AHP + + P++P + DQIRLWE + +R++ T Y++F S+ FE
Sbjct: 359 AQQIIHFLRTRAHPVMLKQSPALPPTITDQIRLWELERDRLQFTEGVLYNQFLSQADFEV 418
Query: 155 ACDYARDRSGLL 166
D A+ L+
Sbjct: 419 LRDRAQGLGCLV 430
>gi|392564310|gb|EIW57488.1| transcription factor Tfb2 [Trametes versicolor FP-101664 SS1]
Length = 477
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 81/126 (64%), Gaps = 6/126 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S++QGF+V+ETN+R+YAY+ + L +L LF ++ + PNL++GA T++S+ A +GIT
Sbjct: 314 SHAQGFIVLETNYRLYAYTDNPLQIAVLNLFVTLKSRFPNLVIGAITRDSVKKALASGIT 373
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
A+Q +AHP++ P +P V DQIRLWE + NR++ + Y F S+ +E
Sbjct: 374 ADQIISYLVTHAHPQMRKNQPLLPVTVQDQIRLWELEKNRMKSQEGYLYTAFASQADYEY 433
Query: 155 ACDYAR 160
+YA+
Sbjct: 434 VLNYAK 439
>gi|74143475|dbj|BAE28812.1| unnamed protein product [Mus musculus]
Length = 463
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 6/123 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ +GITA+Q
Sbjct: 306 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQVIASGITAQQI 365
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
AHP + + P +P + DQIRLWE + +R+ T Y++F S+ VFE +
Sbjct: 366 IHFLRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVVFELLLAH 425
Query: 159 ARD 161
AR+
Sbjct: 426 ARE 428
>gi|348542188|ref|XP_003458568.1| PREDICTED: general transcription factor IIH subunit 4 [Oreochromis
niloticus]
Length = 461
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 81/132 (61%), Gaps = 6/132 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
+ GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A NGIT
Sbjct: 300 TGDAGFIVVETNYRIYAYTNSELQIALVALFSEMLYRFPNVVVAQLTRESVQQAIANGIT 359
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
A+Q AHP + + P +P + DQIRLWE + +R++ T Y++F S+ FE
Sbjct: 360 AQQIIHFLRTRAHPVMLTQTPVLPPTITDQIRLWELERDRLQFTEGVLYNQFLSQADFEV 419
Query: 155 ACDYARDRSGLL 166
D A+ L+
Sbjct: 420 LRDRAQGLGCLV 431
>gi|19113355|ref|NP_596563.1| transcription factor TFIIH complex subunit Tfb2
[Schizosaccharomyces pombe 972h-]
gi|62901133|sp|P87303.2|TFB2_SCHPO RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|3080538|emb|CAA18666.1| transcription factor TFIIH complex subunit Tfb2
[Schizosaccharomyces pombe]
Length = 447
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 79/126 (62%), Gaps = 6/126 (4%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
+ +GF++VETN+R+YAY++S L I+ LF+ + + NL+VG T++S+ A NGI A
Sbjct: 288 DDKGFIIVETNYRLYAYTSSPLQIAIIGLFANLRARFSNLVVGVITRDSIRRALMNGIAA 347
Query: 102 EQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
EQ +AHP++ +P +P + DQI LWE + NR+ TP + +F + F+ A
Sbjct: 348 EQIITYLTTHAHPQMRSNVPLLPPTLVDQIYLWELEKNRLRATPGILFRDFLTDSGFDQA 407
Query: 156 CDYARD 161
+YA++
Sbjct: 408 VEYAKE 413
>gi|149031822|gb|EDL86757.1| rCG41794 [Rattus norvegicus]
Length = 209
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 6/123 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q
Sbjct: 52 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQI 111
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +
Sbjct: 112 IHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAH 171
Query: 159 ARD 161
AR+
Sbjct: 172 ARE 174
>gi|155371845|ref|NP_001094527.1| general transcription factor IIH subunit 4 [Bos taurus]
gi|148878127|gb|AAI46241.1| GTF2H4 protein [Bos taurus]
gi|296474219|tpg|DAA16334.1| TPA: general transcription factor IIH, polypeptide 4, 52kDa [Bos
taurus]
Length = 463
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 80/128 (62%), Gaps = 6/128 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q
Sbjct: 306 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQI 365
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +
Sbjct: 366 IHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAH 425
Query: 159 ARDRSGLL 166
AR+ L+
Sbjct: 426 ARELGVLM 433
>gi|178056954|ref|NP_001116592.1| general transcription factor IIH subunit 4 [Sus scrofa]
gi|41529162|dbj|BAD08424.1| general transcription factor IIH, polypeptide 4 [Sus scrofa]
gi|47496805|dbj|BAD08426.2| general transcription factor IIH, polypeptide 4 [Sus scrofa]
Length = 463
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 6/123 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q
Sbjct: 306 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQI 365
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +
Sbjct: 366 IHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAH 425
Query: 159 ARD 161
AR+
Sbjct: 426 ARE 428
>gi|417401351|gb|JAA47565.1| Putative rna polymer [Desmodus rotundus]
Length = 463
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 80/127 (62%), Gaps = 6/127 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GIT
Sbjct: 302 AHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGIT 361
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
A+Q AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 362 AQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFEL 421
Query: 155 ACDYARD 161
+AR+
Sbjct: 422 LLAHARE 428
>gi|338718559|ref|XP_003363845.1| PREDICTED: general transcription factor IIH subunit 4 [Equus
caballus]
Length = 463
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 6/123 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q
Sbjct: 306 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQI 365
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +
Sbjct: 366 IHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAH 425
Query: 159 ARD 161
AR+
Sbjct: 426 ARE 428
>gi|395831929|ref|XP_003789035.1| PREDICTED: general transcription factor IIH subunit 4 [Otolemur
garnettii]
Length = 463
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 6/123 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q
Sbjct: 306 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQI 365
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +
Sbjct: 366 IHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAH 425
Query: 159 ARD 161
AR+
Sbjct: 426 ARE 428
>gi|344252968|gb|EGW09072.1| General transcription factor IIH subunit 4 [Cricetulus griseus]
Length = 463
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 6/123 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q
Sbjct: 306 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQI 365
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +
Sbjct: 366 IHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAH 425
Query: 159 ARD 161
AR+
Sbjct: 426 ARE 428
>gi|281337500|gb|EFB13084.1| hypothetical protein PANDA_018954 [Ailuropoda melanoleuca]
Length = 463
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 80/127 (62%), Gaps = 6/127 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GIT
Sbjct: 302 AHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGIT 361
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
A+Q AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 362 AQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFEL 421
Query: 155 ACDYARD 161
+AR+
Sbjct: 422 LLAHARE 428
>gi|169610043|ref|XP_001798440.1| hypothetical protein SNOG_08115 [Phaeosphaeria nodorum SN15]
gi|160701967|gb|EAT84391.2| hypothetical protein SNOG_08115 [Phaeosphaeria nodorum SN15]
Length = 426
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 17/155 (10%)
Query: 12 SEDLEAYAIGQWELMDTNAQLWYIVREYISNSQGFVVVETNFRMYAYSTSKLHYEILRLF 71
S L +G E D+ AQ ++GF++VETN+R+YAY+ S + IL LF
Sbjct: 246 SGALPGSDVGTTEKPDSKAQ-----------NKGFIIVETNYRLYAYTNSLIQIAILSLF 294
Query: 72 SKIEYQLPNLIVGATTKESLNNAFENGITAEQ------QNAHPRVADRIPSIPENVCDQI 125
+K++++ PNL+ G TKES++ A + GIT+ Q AHP++ P +P V DQI
Sbjct: 295 TKLQHRFPNLVSGKLTKESVHRAVQAGITSAQIISYLTTYAHPQMQKSNPPLPPTVMDQI 354
Query: 126 RLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYAR 160
RLWE + RVE+T + EF S + YA+
Sbjct: 355 RLWEYEGERVEVTTGYLMREFGSESEYRDVMGYAQ 389
>gi|4504201|ref|NP_001508.1| general transcription factor IIH subunit 4 [Homo sapiens]
gi|113865855|ref|NP_001038968.1| general transcription factor IIH subunit 4 [Pan troglodytes]
gi|114050799|ref|NP_001040607.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|297677636|ref|XP_002816695.1| PREDICTED: general transcription factor IIH subunit 4 isoform 2
[Pongo abelii]
gi|332245940|ref|XP_003272109.1| PREDICTED: general transcription factor IIH subunit 4 [Nomascus
leucogenys]
gi|426352309|ref|XP_004043656.1| PREDICTED: general transcription factor IIH subunit 4 [Gorilla
gorilla gorilla]
gi|17380328|sp|Q92759.1|TF2H4_HUMAN RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=Basic transcription factor 2 52 kDa subunit;
Short=BTF2 p52; AltName: Full=General transcription
factor IIH polypeptide 4; AltName: Full=TFIIH basal
transcription factor complex p52 subunit
gi|38503276|sp|P60027.1|TF2H4_PANTR RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=Basic transcription factor 2 52 kDa subunit;
Short=BTF2 p52; AltName: Full=General transcription
factor IIH polypeptide 4; AltName: Full=TFIIH basal
transcription factor complex p52 subunit
gi|1514597|emb|CAA68870.1| transcription factor TFIIH [Homo sapiens]
gi|13436278|gb|AAH04935.1| General transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|15277224|dbj|BAB63317.1| Transcription factor II H [Homo sapiens]
gi|16740884|gb|AAH16302.1| General transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|21655317|gb|AAM64222.1| general transcription factor IIH, polypeptide 4 (52kD subunit)
[Homo sapiens]
gi|27544403|dbj|BAC54936.1| transcription factor II H [Homo sapiens]
gi|30583481|gb|AAP35985.1| general transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|32127781|dbj|BAC78171.1| transcription factor II H [Pan troglodytes]
gi|55700798|dbj|BAD69753.1| general transcription factor IIH, polypeptide 4, 52kDa [Macaca
mulatta]
gi|60655839|gb|AAX32483.1| general transcription factor IIH polypeptide 4 [synthetic
construct]
gi|60655841|gb|AAX32484.1| general transcription factor IIH polypeptide 4 [synthetic
construct]
gi|86197966|dbj|BAE78622.1| general transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|90960934|dbj|BAE92819.1| general transcription factor IIH, polypeptide 4 [Pan troglodytes]
gi|90960936|dbj|BAE92820.1| general transcription factor IIH, polypeptide 4 [Pan troglodytes]
gi|114306784|dbj|BAF31271.1| TFIIH protein [Homo sapiens]
gi|119623752|gb|EAX03347.1| general transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|123992979|gb|ABM84091.1| general transcription factor IIH, polypeptide 4, 52kDa [synthetic
construct]
gi|123999907|gb|ABM87462.1| general transcription factor IIH, polypeptide 4, 52kDa [synthetic
construct]
gi|355561507|gb|EHH18139.1| General transcription factor IIH polypeptide 4, partial [Macaca
mulatta]
gi|355748409|gb|EHH52892.1| General transcription factor IIH polypeptide 4 [Macaca
fascicularis]
gi|380812138|gb|AFE77944.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|380812140|gb|AFE77945.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|383408563|gb|AFH27495.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|410214852|gb|JAA04645.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
gi|410250640|gb|JAA13287.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
gi|410290944|gb|JAA24072.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
gi|410352807|gb|JAA43007.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
Length = 462
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 6/123 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q
Sbjct: 305 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQI 364
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +
Sbjct: 365 IHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAH 424
Query: 159 ARD 161
AR+
Sbjct: 425 ARE 427
>gi|47059175|ref|NP_997666.1| general transcription factor II H, polypeptide 4 [Rattus
norvegicus]
gi|46237651|emb|CAE84027.1| general transcription factor II H, polypeptide 4 [Rattus
norvegicus]
gi|117558335|gb|AAI27470.1| General transcription factor II H, polypeptide 4 [Rattus
norvegicus]
Length = 463
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 6/123 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q
Sbjct: 306 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQI 365
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +
Sbjct: 366 IHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAH 425
Query: 159 ARD 161
AR+
Sbjct: 426 ARE 428
>gi|440896165|gb|ELR48176.1| General transcription factor IIH subunit 4 [Bos grunniens mutus]
Length = 463
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 6/123 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q
Sbjct: 306 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQI 365
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +
Sbjct: 366 IHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAH 425
Query: 159 ARD 161
AR+
Sbjct: 426 ARE 428
>gi|426250586|ref|XP_004019016.1| PREDICTED: general transcription factor IIH subunit 4 [Ovis aries]
Length = 463
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 6/123 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q
Sbjct: 306 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQI 365
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +
Sbjct: 366 IHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAH 425
Query: 159 ARD 161
AR+
Sbjct: 426 ARE 428
>gi|261187837|ref|XP_002620336.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Ajellomyces dermatitidis SLH14081]
gi|239593453|gb|EEQ76034.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Ajellomyces dermatitidis SLH14081]
gi|239608433|gb|EEQ85420.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Ajellomyces dermatitidis ER-3]
gi|327356043|gb|EGE84900.1| RNA pol II transcription initiation subunit [Ajellomyces
dermatitidis ATCC 18188]
Length = 485
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 18/140 (12%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G T++S+ A E GITA+Q
Sbjct: 318 GFIIIETNYRLYAYTSSPLQISLISLFTTLKYRFPNLITGKLTRQSIRRAVEMGITADQI 377
Query: 104 -----QNAHPRVAD-----------RIPSI-PENVCDQIRLWESDLNRVEMTPAHYYDEF 146
+AHP++ +P++ P V DQIRLW+ + +R++ TP + +F
Sbjct: 378 ISYLTTHAHPQMRKYHASKSGANPAGVPAVLPPTVVDQIRLWQLERDRIKATPGFLFKDF 437
Query: 147 PSRDVFEAACDYARDRSGLL 166
S FE C YA + LL
Sbjct: 438 VSLAEFEGPCRYAEEIGVLL 457
>gi|444727354|gb|ELW67853.1| Valyl-tRNA synthetase, mitochondrial [Tupaia chinensis]
Length = 1382
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 50/127 (39%), Positives = 80/127 (62%), Gaps = 6/127 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GIT
Sbjct: 259 AHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGIT 318
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
A+Q AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 319 AQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFEL 378
Query: 155 ACDYARD 161
+AR+
Sbjct: 379 LLAHARE 385
>gi|325089533|gb|EGC42843.1| TFIIH basal transcription factor complex p52 subunit [Ajellomyces
capsulatus H88]
Length = 485
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 82/137 (59%), Gaps = 18/137 (13%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
S GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G T++S+ A E GITA+
Sbjct: 316 STGFIIIETNYRLYAYTSSPLQISLIALFTSLKYRFPNLITGKLTRQSVRRAVEMGITAD 375
Query: 103 Q------QNAHPRVAD-----------RIPSI-PENVCDQIRLWESDLNRVEMTPAHYYD 144
Q +AHP++ +P++ P V DQIRLW+ + +R++ TP +
Sbjct: 376 QIISYLTTHAHPQMRKYHATKSGANPVGVPTVLPPTVVDQIRLWQLERDRIKATPGFLFK 435
Query: 145 EFPSRDVFEAACDYARD 161
+F S FE C YA +
Sbjct: 436 DFVSLAEFEGPCRYAEE 452
>gi|240279262|gb|EER42767.1| TFIIH basal transcription factor complex p52 subunit [Ajellomyces
capsulatus H143]
Length = 485
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 82/137 (59%), Gaps = 18/137 (13%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
S GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G T++S+ A E GITA+
Sbjct: 316 STGFIIIETNYRLYAYTSSPLQISLIALFTSLKYRFPNLITGKLTRQSVRRAVEMGITAD 375
Query: 103 Q------QNAHPRVAD-----------RIPSI-PENVCDQIRLWESDLNRVEMTPAHYYD 144
Q +AHP++ +P++ P V DQIRLW+ + +R++ TP +
Sbjct: 376 QIISYLTTHAHPQMRKYHATKSGANPVGVPTVLPPTVVDQIRLWQLERDRIKATPGFLFK 435
Query: 145 EFPSRDVFEAACDYARD 161
+F S FE C YA +
Sbjct: 436 DFVSLAEFEGPCRYAEE 452
>gi|359320969|ref|XP_003639474.1| PREDICTED: general transcription factor IIH subunit 4-like [Canis
lupus familiaris]
Length = 463
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 80/127 (62%), Gaps = 6/127 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ GF++VETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GIT
Sbjct: 302 AHQPGFIIVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGIT 361
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
A+Q AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 362 AQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFEL 421
Query: 155 ACDYARD 161
+AR+
Sbjct: 422 LLAHARE 428
>gi|344307658|ref|XP_003422497.1| PREDICTED: general transcription factor IIH subunit 4 [Loxodonta
africana]
Length = 463
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 80/127 (62%), Gaps = 6/127 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ GF++VETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GIT
Sbjct: 302 AHQPGFIIVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGIT 361
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
A+Q AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 362 AQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFEL 421
Query: 155 ACDYARD 161
+AR+
Sbjct: 422 LLAHARE 428
>gi|449540295|gb|EMD31288.1| hypothetical protein CERSUDRAFT_119839 [Ceriporiopsis subvermispora
B]
Length = 412
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 77/123 (62%), Gaps = 6/123 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+V+ETN+R+YAY+ + L +L LF ++ + PNL++GA T+ES+ A NGITA+Q
Sbjct: 254 GFIVLETNYRVYAYTDNPLQIAVLNLFVTMKSRFPNLVIGAVTRESVKKALANGITADQI 313
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
+AHP++ P +P V DQIRLWE + NRV+ + Y F S+ +E +Y
Sbjct: 314 ISYLTAHAHPQMRRYKPLLPVTVQDQIRLWELEKNRVKSQEGYLYTAFASQADYEYVLNY 373
Query: 159 ARD 161
A+
Sbjct: 374 AKQ 376
>gi|169784197|ref|XP_001826560.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus oryzae RIB40]
gi|238508739|ref|XP_002385554.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus flavus NRRL3357]
gi|83775305|dbj|BAE65427.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220688446|gb|EED44799.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus flavus NRRL3357]
gi|391868531|gb|EIT77745.1| RNA polymerase II transcription initiation protein [Aspergillus
oryzae 3.042]
Length = 480
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 82/136 (60%), Gaps = 19/136 (13%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF++VETN+R+YAY++S L ++ LF+ ++Y+ PNLI G T++S+ A E GITA+Q
Sbjct: 315 GFIIVETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAIEMGITADQI 374
Query: 104 -----QNAHPRV------------ADRIPSI-PENVCDQIRLWESDLNRVEMTPAHYYDE 145
+AHP++ A PS+ P V DQIRLW+ + +RV+ TP + +
Sbjct: 375 ISYLATHAHPQMRKHNVSRSTSNQAGIPPSVLPPTVTDQIRLWQLERDRVKATPGFLFKD 434
Query: 146 FPSRDVFEAACDYARD 161
F S +EA C YA +
Sbjct: 435 FVSLAEYEAPCRYAEE 450
>gi|396459783|ref|XP_003834504.1| similar to RNA polymerase II transcription factor B subunit 2
[Leptosphaeria maculans JN3]
gi|312211053|emb|CBX91139.1| similar to RNA polymerase II transcription factor B subunit 2
[Leptosphaeria maculans JN3]
Length = 483
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 78/129 (60%), Gaps = 7/129 (5%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+GF+++ETN+R+YAY+ S + IL LF+K++++ PNL+ G TKES++ A GIT+ Q
Sbjct: 322 KGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKESVHKAVSAGITSAQ 381
Query: 104 ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 157
AHP++ + IP V DQIRLWE + RVE+TP +F S +
Sbjct: 382 IISYLSTYAHPQMQKNVSFIPPTVMDQIRLWEYEGERVEVTPGFLMKDFGSDAEYRDVLG 441
Query: 158 YARDRSGLL 166
YA D G+L
Sbjct: 442 YA-DALGVL 449
>gi|62896773|dbj|BAD96327.1| general transcription factor IIH, polypeptide 4, 52kDa variant
[Homo sapiens]
Length = 462
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 77/123 (62%), Gaps = 6/123 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q
Sbjct: 305 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQI 364
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
AHP + + P +P + DQIRLWE +R+ T Y++F S+ FE +
Sbjct: 365 IHFLRTRAHPVMLKQTPVLPPTITDQIRLWELGRDRLRFTEGVLYNQFLSQVDFELLLAH 424
Query: 159 ARD 161
AR+
Sbjct: 425 ARE 427
>gi|198428509|ref|XP_002131018.1| PREDICTED: similar to General transcription factor II H,
polypeptide 4 [Ciona intestinalis]
Length = 463
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 82/133 (61%), Gaps = 6/133 (4%)
Query: 40 ISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGI 99
++NS+GF++ ETNFR+YAY+ S+L Y IL LF K+ Y+ PN+ V T++S+ +A NGI
Sbjct: 299 VTNSRGFILAETNFRVYAYTDSELQYSILSLFCKMLYRFPNVCVLQLTRKSIQSAVVNGI 358
Query: 100 TAEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 153
TA+Q NAHP + P I + DQ+RLW + +R+ Y++F ++ FE
Sbjct: 359 TADQILHYIKANAHPDMLKNDPIIAPTLADQVRLWAMERDRLTYRDGVLYNQFLAQKDFE 418
Query: 154 AACDYARDRSGLL 166
+YA++ L+
Sbjct: 419 VLRNYAKELGALI 431
>gi|351713119|gb|EHB16038.1| General transcription factor IIH subunit 4 [Heterocephalus glaber]
Length = 463
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 6/123 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q
Sbjct: 306 GFIVVETNYRLYAYTESELQVALIALFSEMLYRFPNVVVAQVTRESVQQAIGSGITAQQI 365
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +
Sbjct: 366 IHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAH 425
Query: 159 ARD 161
AR+
Sbjct: 426 ARE 428
>gi|410958682|ref|XP_003985944.1| PREDICTED: general transcription factor IIH subunit 4 [Felis catus]
Length = 463
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 6/123 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q
Sbjct: 306 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQI 365
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +
Sbjct: 366 IHFLRTRAHPVMLKQSPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAH 425
Query: 159 ARD 161
AR+
Sbjct: 426 ARE 428
>gi|392594388|gb|EIW83712.1| transcription factor Tfb2 [Coniophora puteana RWD-64-598 SS2]
Length = 486
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
+N GF+V+ETN+R+YAY+ + L +L LF ++Y+ PNL+VG T+ES+ A NGI+
Sbjct: 324 TNDHGFIVLETNYRVYAYTDNPLQIAVLNLFITLKYRFPNLVVGMLTRESVRRALGNGIS 383
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
AEQ +AHP++ P +P V DQ+RLWE + NR++ Y +F ++ +E
Sbjct: 384 AEQVISYLTAHAHPQMRKNNPLLPVTVQDQVRLWELERNRLKSDDGFLYKDFATQADYEY 443
Query: 155 ACDYARD 161
YA++
Sbjct: 444 VLAYAKE 450
>gi|121714341|ref|XP_001274781.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus clavatus NRRL 1]
gi|119402935|gb|EAW13355.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus clavatus NRRL 1]
Length = 478
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 82/136 (60%), Gaps = 19/136 (13%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G T++S+ A E GITA+Q
Sbjct: 313 GFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSIRRAVEMGITADQI 372
Query: 104 -----QNAHPRV----ADR---------IPSIPENVCDQIRLWESDLNRVEMTPAHYYDE 145
+AHP++ A R + +P V DQIRLW+ + +RV+ TP + +
Sbjct: 373 ISYLSTHAHPQMRKHNASRSTSNQAGMPVSVLPPTVVDQIRLWQLERDRVKATPGFLFKD 432
Query: 146 FPSRDVFEAACDYARD 161
F S +EA C YA +
Sbjct: 433 FVSLAEYEAPCRYAEE 448
>gi|119179887|ref|XP_001241468.1| hypothetical protein CIMG_08631 [Coccidioides immitis RS]
gi|392866653|gb|EAS30172.2| transcription factor Tfb2 [Coccidioides immitis RS]
Length = 487
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 19/136 (13%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G T++S+ A E GITA+Q
Sbjct: 319 GFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKLTRQSIRRAVEMGITADQI 378
Query: 104 -----QNAHPRV------------ADRIPSI-PENVCDQIRLWESDLNRVEMTPAHYYDE 145
+AHP++ A + S+ P V DQIRLW+ + +R++ TP + +
Sbjct: 379 ISYLTTHAHPQMRKVNASKSTSTTAGLLASVLPPTVVDQIRLWQLERDRLKATPGFLFKD 438
Query: 146 FPSRDVFEAACDYARD 161
F S FEA C YA +
Sbjct: 439 FASSAEFEAPCRYAEE 454
>gi|242794214|ref|XP_002482325.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces stipitatus ATCC 10500]
gi|218718913|gb|EED18333.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces stipitatus ATCC 10500]
Length = 481
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 80/136 (58%), Gaps = 19/136 (13%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G T++S+ A E GITA+Q
Sbjct: 315 GFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKITRQSIRRAVEMGITADQI 374
Query: 104 -----QNAHP--RVADRIPS-----------IPENVCDQIRLWESDLNRVEMTPAHYYDE 145
+AHP R D + S +P V DQIRLW+ + +R++ TP + E
Sbjct: 375 ISYLSTHAHPQMRKEDAVKSTSNTAGLPRSVLPPTVVDQIRLWQLERDRIKATPGFLFKE 434
Query: 146 FPSRDVFEAACDYARD 161
F S +E C YA +
Sbjct: 435 FASLAEYEGPCRYAEE 450
>gi|298705308|emb|CBJ48998.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 534
Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 53/127 (41%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
++VETNF++ AY+ SKLH+ +L LF ++ LPN IVGA T+ES+ A GI Q
Sbjct: 350 IIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLD 409
Query: 104 ---QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYD-EFPSRDVFEAACDYA 159
+AHP V R P +PEN+ DQ+ LWE + +R+E D + SRD F ++A
Sbjct: 410 FLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMTEFA 469
Query: 160 RDRSGLL 166
+ GLL
Sbjct: 470 NAKQGLL 476
>gi|409077631|gb|EKM77996.1| hypothetical protein AGABI1DRAFT_114851 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198975|gb|EKV48900.1| hypothetical protein AGABI2DRAFT_191077 [Agaricus bisporus var.
bisporus H97]
Length = 467
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 78/122 (63%), Gaps = 6/122 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+V+ETN+R+YAY+ + L +L LF ++Y+ PNL+VG T++S+ A NGITA+Q
Sbjct: 308 GFIVLETNYRIYAYTDNPLQTAVLNLFVSLKYRFPNLVVGMITRDSVRRALMNGITADQI 367
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
+AHP++ P +P V DQIRLWE + NR++ + + Y F S+ ++ +Y
Sbjct: 368 ISYLITHAHPQMRKNNPLLPVTVQDQIRLWELEKNRLKSSEGYLYTAFTSQADYDLVLNY 427
Query: 159 AR 160
A+
Sbjct: 428 AK 429
>gi|6754094|ref|NP_034494.1| general transcription factor IIH subunit 4 [Mus musculus]
gi|18202124|sp|O70422.1|TF2H4_MOUSE RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=Basic transcription factor 2 52 kDa subunit;
Short=BTF2 p52; AltName: Full=General transcription
factor IIH polypeptide 4; AltName: Full=TFIIH basal
transcription factor complex p52 subunit
gi|2997755|gb|AAC08594.1| TFIIH transcription/DNA repair factor p52 subunit [Mus musculus]
gi|15215027|gb|AAH12638.1| Gtf2h4 protein [Mus musculus]
gi|26348003|dbj|BAC37650.1| unnamed protein product [Mus musculus]
gi|74194835|dbj|BAE26009.1| unnamed protein product [Mus musculus]
gi|74222199|dbj|BAE26910.1| unnamed protein product [Mus musculus]
Length = 463
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 6/123 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q
Sbjct: 306 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQI 365
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +
Sbjct: 366 IHFLRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAH 425
Query: 159 ARD 161
AR+
Sbjct: 426 ARE 428
>gi|302667863|ref|XP_003025510.1| hypothetical protein TRV_00272 [Trichophyton verrucosum HKI 0517]
gi|291189624|gb|EFE44899.1| hypothetical protein TRV_00272 [Trichophyton verrucosum HKI 0517]
Length = 386
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 79/131 (60%), Gaps = 14/131 (10%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF++VETN+R+YAY++S L ++ LF+ ++++ PNLI G T++S+ A E GITA+Q
Sbjct: 222 GFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITGKITRQSVRRAIEMGITADQI 281
Query: 104 -----QNAHPRVADRIPS--------IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 150
+AHP++ S +P V DQIRLW+ + +R++ T + EF +
Sbjct: 282 ISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQLERDRIKATSGFLFKEFDTFA 341
Query: 151 VFEAACDYARD 161
FEA C YA +
Sbjct: 342 EFEAPCKYAEE 352
>gi|302495702|ref|XP_003009866.1| hypothetical protein ARB_03925 [Arthroderma benhamiae CBS 112371]
gi|291173385|gb|EFE29221.1| hypothetical protein ARB_03925 [Arthroderma benhamiae CBS 112371]
Length = 386
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 79/131 (60%), Gaps = 14/131 (10%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF++VETN+R+YAY++S L ++ LF+ ++++ PNLI G T++S+ A E GITA+Q
Sbjct: 222 GFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITGKITRQSVRRAIEMGITADQI 281
Query: 104 -----QNAHPRVADRIPS--------IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 150
+AHP++ S +P V DQIRLW+ + +R++ T + EF +
Sbjct: 282 ISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQLERDRIKATSGFLFKEFDTFA 341
Query: 151 VFEAACDYARD 161
FEA C YA +
Sbjct: 342 EFEAPCKYAEE 352
>gi|299750117|ref|XP_001836551.2| transcription factor TFIIH complex subunit Tfb2 [Coprinopsis
cinerea okayama7#130]
gi|298408751|gb|EAU85259.2| transcription factor TFIIH complex subunit Tfb2 [Coprinopsis
cinerea okayama7#130]
Length = 403
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 78/124 (62%), Gaps = 6/124 (4%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+GF+++ETN+R+YAY+ + L +L LF+ ++Y+ PNL+VG+ T+ES+ A NGI+A+Q
Sbjct: 244 EGFIILETNYRIYAYTDNPLQTAVLSLFASLKYRFPNLVVGSITRESVKKALLNGISADQ 303
Query: 104 ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 157
+AHP + P +P V DQIRLWE + NR++ Y F S+ +E
Sbjct: 304 IISYLITHAHPNMRKNNPLLPVTVQDQIRLWELEKNRLKSREGFLYTAFASQADYELVLQ 363
Query: 158 YARD 161
YA++
Sbjct: 364 YAKE 367
>gi|295662078|ref|XP_002791593.1| RNA polymerase II transcription factor B subunit 2
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226279719|gb|EEH35285.1| RNA polymerase II transcription factor B subunit 2
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 484
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 80/136 (58%), Gaps = 17/136 (12%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
S GF+V+ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G T++S+ A E GITA+
Sbjct: 316 STGFIVIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSIRRAVEMGITAD 375
Query: 103 Q------QNAHPRVADRIPS-----------IPENVCDQIRLWESDLNRVEMTPAHYYDE 145
Q +AHP++ S +P V DQIRLW+ + +R++ TP + +
Sbjct: 376 QIISYLTTHAHPQMRKYHASKSSHTVGAPAVLPPTVVDQIRLWQLERDRIKATPGFLFKD 435
Query: 146 FPSRDVFEAACDYARD 161
F S F+ C YA +
Sbjct: 436 FVSLAEFDGPCRYAEE 451
>gi|440636738|gb|ELR06657.1| hypothetical protein GMDG_00274 [Geomyces destructans 20631-21]
Length = 470
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 81/130 (62%), Gaps = 7/130 (5%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
+ GF+V+ETN+R+YAY++S L +L LF+K+ + PN++ G T++S+ A E+GITA+
Sbjct: 314 TTGFIVIETNYRLYAYTSSPLQIAVLALFAKLSTRYPNMVSGRVTRDSVRGAIEHGITAD 373
Query: 103 Q------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAAC 156
Q +AHP++ + P +P V DQIRLW+ + R++ T + +F S +E
Sbjct: 374 QIISYLTTHAHPQLRRKSPVLPPTVVDQIRLWQIENERMKATAGFLFKDFASLAEYEGCV 433
Query: 157 DYARDRSGLL 166
YA D G+L
Sbjct: 434 RYA-DEIGVL 442
>gi|225682227|gb|EEH20511.1| RNA polymerase II transcription factor B subunit 2
[Paracoccidioides brasiliensis Pb03]
gi|226289599|gb|EEH45083.1| TFIIH basal transcription factor complex p52 subunit
[Paracoccidioides brasiliensis Pb18]
Length = 484
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 80/136 (58%), Gaps = 17/136 (12%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
S GF+V+ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G T++S+ A E GITA+
Sbjct: 316 STGFIVIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSIRRAVEMGITAD 375
Query: 103 Q------QNAHPRVADRIPS-----------IPENVCDQIRLWESDLNRVEMTPAHYYDE 145
Q +AHP++ S +P V DQIRLW+ + +R++ TP + +
Sbjct: 376 QIISYLTTHAHPQMRKYHASKSSHTVGAPAVLPPTVVDQIRLWQLERDRIKATPGFLFKD 435
Query: 146 FPSRDVFEAACDYARD 161
F S F+ C YA +
Sbjct: 436 FVSLAEFDGPCRYAEE 451
>gi|303321033|ref|XP_003070511.1| Transcription factor tfb2 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240110207|gb|EER28366.1| Transcription factor tfb2 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320036051|gb|EFW17991.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Coccidioides posadasii str. Silveira]
Length = 487
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 82/136 (60%), Gaps = 19/136 (13%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G T++S+ A E GITA+Q
Sbjct: 319 GFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKLTRQSIRRAVEMGITADQI 378
Query: 104 -----QNAHPRV-----------ADRIPS--IPENVCDQIRLWESDLNRVEMTPAHYYDE 145
+AHP++ +P+ +P V DQIRLW+ + +R++ TP + +
Sbjct: 379 ISYLTTHAHPQMRKVNASKSTSTTAGLPASVLPPTVVDQIRLWQLERDRLKATPGFLFKD 438
Query: 146 FPSRDVFEAACDYARD 161
F S FEA C YA +
Sbjct: 439 FASSAEFEAPCRYAEE 454
>gi|327298217|ref|XP_003233802.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
Tfb2 [Trichophyton rubrum CBS 118892]
gi|326463980|gb|EGD89433.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
Tfb2 [Trichophyton rubrum CBS 118892]
Length = 484
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 79/131 (60%), Gaps = 14/131 (10%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF++VETN+R+YAY++S L ++ LF+ ++++ PNLI G T++S+ A E GITA+Q
Sbjct: 320 GFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITGKITRQSVRRAIEMGITADQI 379
Query: 104 -----QNAHPRVADRIPS--------IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 150
+AHP++ S +P V DQIRLW+ + +R++ T + EF +
Sbjct: 380 ISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQLERDRIKATSGFLFKEFDTFA 439
Query: 151 VFEAACDYARD 161
FEA C YA +
Sbjct: 440 EFEAPCKYAEE 450
>gi|343428936|emb|CBQ72481.1| probable TFB2-TFIIH subunit (transcription/repair factor)
[Sporisorium reilianum SRZ2]
Length = 493
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 6/123 (4%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+G++++ETN+R+YAY++++L +L LF I+ + PNL+VG+ T++S+ +A NGITAEQ
Sbjct: 337 RGYIILETNYRLYAYTSNRLRVAVLSLFVTIKARFPNLVVGSITRDSVKSALANGITAEQ 396
Query: 104 ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 157
+AH ++ P +P V DQIRLWE + NRV+ + +F S+ FE +
Sbjct: 397 IITYLTHHAHVQMHRNDPLLPVTVSDQIRLWEREKNRVQQNLGSLFTDFTSQFDFEEVRN 456
Query: 158 YAR 160
YA+
Sbjct: 457 YAK 459
>gi|296818081|ref|XP_002849377.1| RNA polymerase II transcription factor B subunit 2 [Arthroderma
otae CBS 113480]
gi|238839830|gb|EEQ29492.1| RNA polymerase II transcription factor B subunit 2 [Arthroderma
otae CBS 113480]
Length = 484
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 79/134 (58%), Gaps = 14/134 (10%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
GF++VETN+R+YAY++S L ++ LF+ ++++ PNLI G T++S+ A E GITA
Sbjct: 317 GGTGFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITGKITRQSVRRAIEMGITA 376
Query: 102 EQ------QNAHPRVADRIPS--------IPENVCDQIRLWESDLNRVEMTPAHYYDEFP 147
+Q +AHP++ S +P V DQIRLW+ + +R++ T + EF
Sbjct: 377 DQIVSYLTTHAHPQMRKTKKSTSNVAASILPPTVVDQIRLWQLERDRIKATSGFLFKEFD 436
Query: 148 SRDVFEAACDYARD 161
+ FEA C YA +
Sbjct: 437 TFAEFEAPCKYAEE 450
>gi|225555033|gb|EEH03326.1| RNA pol II transcription initiation subunit [Ajellomyces capsulatus
G186AR]
Length = 485
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 82/137 (59%), Gaps = 18/137 (13%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
S GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G T++S+ A E GITA+
Sbjct: 316 STGFIIIETNYRLYAYTSSPLQISLIALFTSLKYRFPNLITGKLTRQSVRRAVEMGITAD 375
Query: 103 Q------QNAHPRVAD-----------RIPSI-PENVCDQIRLWESDLNRVEMTPAHYYD 144
Q +AHP++ +P++ P V DQIRLW+ + +R++ TP +
Sbjct: 376 QIISYLTTHAHPQMRKYHATKAGANPVGVPTVLPPTVVDQIRLWQLERDRIKATPGFLFK 435
Query: 145 EFPSRDVFEAACDYARD 161
+F + FE C YA +
Sbjct: 436 DFVNLAEFEGPCRYAEE 452
>gi|442757633|gb|JAA70975.1| Putative rna polymer [Ixodes ricinus]
Length = 459
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 78/132 (59%), Gaps = 6/132 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S G++VVETN+R+YAY+ S+L +L LF ++ Y+LPNL+VG T+ES+ A +GIT
Sbjct: 298 SYESGYIVVETNYRVYAYTDSQLQVALLALFCELMYRLPNLVVGVLTRESVRQALRSGIT 357
Query: 101 AE------QQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
+ Q +AHP + P IP + DQ+RLWE + +R Y +F S+ F+
Sbjct: 358 SNQIIKFLQMHAHPEAQKQSPVIPPTIMDQLRLWELERDRFNFREGVLYSQFISQSDFQL 417
Query: 155 ACDYARDRSGLL 166
+YA D L+
Sbjct: 418 LRNYASDLGVLI 429
>gi|212535854|ref|XP_002148083.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
gi|210070482|gb|EEA24572.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
Length = 481
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 19/136 (13%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G T++S+ A E GITA+Q
Sbjct: 315 GFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKITRQSIRRAVEMGITADQI 374
Query: 104 -----QNAHPRVADR-----------IPS--IPENVCDQIRLWESDLNRVEMTPAHYYDE 145
+AHP++ IP +P V DQIRLW+ + +R++ TP + E
Sbjct: 375 ISYLSTHAHPQMRKEGAVKSTSNTAGIPRSVLPPTVVDQIRLWQLERDRIKATPGFLFKE 434
Query: 146 FPSRDVFEAACDYARD 161
F S +E C YA +
Sbjct: 435 FASLAEYEGPCRYAEE 450
>gi|357618296|gb|EHJ71332.1| putative TFIIH basal transcription factor complex p52 subunit
[Danaus plexippus]
Length = 603
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 80/137 (58%), Gaps = 13/137 (9%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
S G+++ ETN+R+YAY+TS L +L LF+++ Y+ PN++VG T+ES+ A GI+A+
Sbjct: 437 SSGYIIAETNYRVYAYTTSALQVALLGLFTELVYRFPNVVVGVLTRESVRAALRGGISAQ 496
Query: 103 Q------QNAHPRVAD-------RIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSR 149
Q Q++HP++ S+P V DQIRLWES+ NR T Y++F S+
Sbjct: 497 QIITYLEQHSHPQMLKSDQGGIRSSSSLPPTVLDQIRLWESERNRFTYTEGVVYNQFLSQ 556
Query: 150 DVFEAACDYARDRSGLL 166
F DY R L+
Sbjct: 557 AEFNVLRDYGRSSGALV 573
>gi|353240543|emb|CCA72408.1| probable TFB2-TFIIH subunit (transcription/repair factor)
[Piriformospora indica DSM 11827]
Length = 462
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 77/125 (61%), Gaps = 6/125 (4%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
SQ FVV+ETN+ +YAY+ + L +L LF + + PN+I+G+ T++S+ A NGITA+
Sbjct: 304 SQEFVVLETNYHVYAYTNNPLQIAVLNLFVSFKARFPNMIMGSLTRDSVKKALVNGITAD 363
Query: 103 Q------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAAC 156
Q +AHP++ P IP V DQIRLWE + +RV+ + Y EF S + +E
Sbjct: 364 QILSYLVTHAHPQMRKNNPIIPVTVQDQIRLWELERHRVKGQDGYLYKEFASMNDYEVVV 423
Query: 157 DYARD 161
YAR+
Sbjct: 424 QYARE 428
>gi|159474228|ref|XP_001695231.1| predicted protein [Chlamydomonas reinhardtii]
gi|158276165|gb|EDP01939.1| predicted protein [Chlamydomonas reinhardtii]
Length = 435
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 6/114 (5%)
Query: 46 FVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQQN 105
FV+VE+N+R+Y Y+ S + +L LF K E LPNL VGA ++S+ A GITA++
Sbjct: 299 FVIVESNYRVYVYTRSPVTIAVLELFVKREALLPNLFVGAIRRDSILAALARGITADELV 358
Query: 106 A------HPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 153
A HP +A R P +PE V DQIRLWE+ +NR++ PA Y+ SR ++E
Sbjct: 359 AYLSARPHPSIAARCPVVPEVVSDQIRLWEASMNRLQAHPAVLYENMESRQLYE 412
>gi|157113167|ref|XP_001651923.1| TFIIH basal transcription factor complex p52 subunit [Aedes
aegypti]
gi|108877858|gb|EAT42083.1| AAEL006356-PA [Aedes aegypti]
Length = 487
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 80/129 (62%), Gaps = 12/129 (9%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+G+++VETN+R+YAY+ S L +L LF+++ Y+ PNL+VG T++S+ AF GITAEQ
Sbjct: 322 KGYIIVETNYRVYAYTDSNLQVALLGLFTELLYRFPNLVVGVLTRDSVRQAFRGGITAEQ 381
Query: 104 ------QNAHPRVADRIPSI------PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDV 151
Q+AHP + + +I P V DQI+LWE++ NR T Y++F S+
Sbjct: 382 IISYLEQHAHPTMLNMEQAINSKSPLPPTVVDQIKLWENERNRFTYTEGVVYNQFLSQGD 441
Query: 152 FEAACDYAR 160
F DYA+
Sbjct: 442 FNTLRDYAQ 450
>gi|154273196|ref|XP_001537450.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150415962|gb|EDN11306.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 455
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 18/137 (13%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
S GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G T++S+ A E GITA+
Sbjct: 291 STGFIIIETNYRLYAYTSSPLQISLIALFTSLKYRFPNLITGKLTRQSVRRAVEMGITAD 350
Query: 103 Q------QNAHPRVADRIPS------------IPENVCDQIRLWESDLNRVEMTPAHYYD 144
Q +AHP++ + +P V DQIRLW+ + +R++ TP +
Sbjct: 351 QIISYLTTHAHPQMRKYHATKPGANPVGVHTVLPPTVVDQIRLWQLERDRIKATPGFLFK 410
Query: 145 EFPSRDVFEAACDYARD 161
+F S FE C YA +
Sbjct: 411 DFVSLAEFEGPCRYAEE 427
>gi|156378083|ref|XP_001630974.1| predicted protein [Nematostella vectensis]
gi|156218005|gb|EDO38911.1| predicted protein [Nematostella vectensis]
Length = 471
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 76/128 (59%), Gaps = 6/128 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE-- 102
GF+++ETN+R+YAY+ S L ++ LF +I + PNL V + T+ES A +GI+AE
Sbjct: 314 GFIIIETNYRVYAYTESCLQVSLIGLFCEILCRFPNLCVASLTRESCQQALASGISAEQI 373
Query: 103 ----QQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
Q AHP + R P IP + DQ+RLWE + +R++ T Y++F S+ FE Y
Sbjct: 374 LNFLQTRAHPEMLKRTPIIPSTISDQVRLWEMERSRMKFTEGVLYNQFLSQADFEMLRKY 433
Query: 159 ARDRSGLL 166
A D L+
Sbjct: 434 AEDLGVLI 441
>gi|170039509|ref|XP_001847575.1| TFIIH basal transcription factor complex p52 subunit [Culex
quinquefasciatus]
gi|167863052|gb|EDS26435.1| TFIIH basal transcription factor complex p52 subunit [Culex
quinquefasciatus]
Length = 492
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 81/132 (61%), Gaps = 12/132 (9%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
+ +G++VVETN+R+YAY+ S L +L LF+++ Y+ PNL+VG T++S+ AF GIT
Sbjct: 324 AQDKGYIVVETNYRVYAYTDSNLQVALLGLFTELLYRFPNLVVGVLTRDSVRQAFRGGIT 383
Query: 101 AEQ------QNAHP------RVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPS 148
A+Q Q+AHP + + ++P V DQI+LWE++ NR T Y++F S
Sbjct: 384 ADQIISYLEQHAHPTMHNVEQTINTKSALPPTVVDQIKLWENERNRFTYTEGVVYNQFLS 443
Query: 149 RDVFEAACDYAR 160
+ F DYA+
Sbjct: 444 QGDFNTLRDYAQ 455
>gi|212535856|ref|XP_002148084.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
gi|210070483|gb|EEA24573.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
Length = 422
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 19/136 (13%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G T++S+ A E GITA+Q
Sbjct: 256 GFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKITRQSIRRAVEMGITADQI 315
Query: 104 -----QNAHPRVADR-----------IPS--IPENVCDQIRLWESDLNRVEMTPAHYYDE 145
+AHP++ IP +P V DQIRLW+ + +R++ TP + E
Sbjct: 316 ISYLSTHAHPQMRKEGAVKSTSNTAGIPRSVLPPTVVDQIRLWQLERDRIKATPGFLFKE 375
Query: 146 FPSRDVFEAACDYARD 161
F S +E C YA +
Sbjct: 376 FASLAEYEGPCRYAEE 391
>gi|281208616|gb|EFA82792.1| general transcription factor IIH [Polysphondylium pallidum PN500]
Length = 458
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 8/126 (6%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
QG++++ETNFR+YAY+ S L +L LF K+ Y+LPNL VG T+ES+ AF +GITA+Q
Sbjct: 304 QGYIILETNFRIYAYTASSLQISLLSLFVKMLYRLPNLSVGILTRESIRTAFLHGITADQ 363
Query: 104 ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 157
QN HP + PE V +QIR+WE++ NR+ A +D FP+++ F
Sbjct: 364 IVDFIKQNGHPNMLK--VGAPEIVFEQIRIWENERNRILYKKAVLFDSFPTQESFNMTLQ 421
Query: 158 YARDRS 163
YA+D S
Sbjct: 422 YAKDLS 427
>gi|326483225|gb|EGE07235.1| transcription factor Tfb2 [Trichophyton equinum CBS 127.97]
Length = 484
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 78/131 (59%), Gaps = 14/131 (10%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF++VETN R+YAY++S L ++ LF+ ++++ PNLI G T++S+ A E GITA+Q
Sbjct: 320 GFIIVETNHRLYAYTSSPLQISLISLFTTLKFRFPNLITGKITRQSVRRAIEMGITADQI 379
Query: 104 -----QNAHPRVADRIPS--------IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 150
+AHP++ S +P V DQIRLW+ + +R++ T + EF +
Sbjct: 380 ISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQLERDRIKATSGFLFKEFDTFA 439
Query: 151 VFEAACDYARD 161
FEA C YA +
Sbjct: 440 EFEAPCKYAEE 450
>gi|71024427|ref|XP_762443.1| hypothetical protein UM06296.1 [Ustilago maydis 521]
gi|46097692|gb|EAK82925.1| hypothetical protein UM06296.1 [Ustilago maydis 521]
Length = 491
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 79/123 (64%), Gaps = 6/123 (4%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+G++++ETN+R+YAY+++ L +L LF I+ + PNL+VG+ T++S+ +A NGITAEQ
Sbjct: 335 RGYIILETNYRLYAYTSNPLRVAVLSLFVTIKARFPNLVVGSITRDSVKSALANGITAEQ 394
Query: 104 ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 157
+AH ++ P +P V DQIRLWE + NRV+ + +F S+ FE +
Sbjct: 395 IITYLTHHAHLQMHRNDPLLPVTVSDQIRLWEREKNRVQQNLGSLFTDFTSQFDFEEVRN 454
Query: 158 YAR 160
YA+
Sbjct: 455 YAK 457
>gi|326474968|gb|EGD98977.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
Tfb2 [Trichophyton tonsurans CBS 112818]
Length = 489
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 78/131 (59%), Gaps = 14/131 (10%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF++VETN R+YAY++S L ++ LF+ ++++ PNLI G T++S+ A E GITA+Q
Sbjct: 320 GFIIVETNHRLYAYTSSPLQISLISLFTTLKFRFPNLITGKITRQSVRRAIEMGITADQI 379
Query: 104 -----QNAHPRVADRIPS--------IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 150
+AHP++ S +P V DQIRLW+ + +R++ T + EF +
Sbjct: 380 ISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQLERDRIKATSGFLFKEFDTFA 439
Query: 151 VFEAACDYARD 161
FEA C YA +
Sbjct: 440 EFEAPCKYAEE 450
>gi|302684027|ref|XP_003031694.1| hypothetical protein SCHCODRAFT_15746 [Schizophyllum commune H4-8]
gi|300105387|gb|EFI96791.1| hypothetical protein SCHCODRAFT_15746 [Schizophyllum commune H4-8]
Length = 476
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 78/129 (60%), Gaps = 11/129 (8%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+GF+V+ETN+R+YAY+ + L +L LF +Y+ PNL+VG+ T+ES+ A NGITA+Q
Sbjct: 313 EGFIVLETNYRVYAYTDNALQTAVLNLFITPKYRFPNLVVGSITRESVKRAMSNGITADQ 372
Query: 104 ------QNAHPRVADRI-----PSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF 152
+AHP++ + P +P V DQIRLWE + NR + Y EF S+ +
Sbjct: 373 IISYLITHAHPQMHKNVCLVANPLLPVTVQDQIRLWELERNRTKSQEGFLYTEFASQADY 432
Query: 153 EAACDYARD 161
E +YA+
Sbjct: 433 EYVLNYAKQ 441
>gi|407927340|gb|EKG20235.1| Transcription factor Tfb2 [Macrophomina phaseolina MS6]
Length = 466
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 80/132 (60%), Gaps = 7/132 (5%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S S+G++++ETN+R+YAY++S L +L LF+ +E + PNL+ G TKES+ A GIT
Sbjct: 307 SGSKGYIIIETNYRLYAYTSSPLQIAVLALFTDLETRFPNLVSGKLTKESVQRAIGLGIT 366
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
A+Q AHP++ + P +P V DQIRLW+ + +R+ T + +F D ++
Sbjct: 367 ADQIISYLDTYAHPQMQRKTPVLPPTVVDQIRLWQIEGDRMRATEGFLFKDFRDWDEYQD 426
Query: 155 ACDYARDRSGLL 166
YA D G+L
Sbjct: 427 LKKYA-DSIGVL 437
>gi|31201525|ref|XP_309710.1| AGAP010984-PA [Anopheles gambiae str. PEST]
gi|21293295|gb|EAA05440.1| AGAP010984-PA [Anopheles gambiae str. PEST]
Length = 501
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 81/132 (61%), Gaps = 12/132 (9%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
+ +G+++VETN+R+YAY+ S L +L LF+++ Y+ PNL+VG +++S+ AF GIT
Sbjct: 333 TKDKGYIIVETNYRVYAYTDSNLQVALLGLFTELLYRFPNLVVGVLSRDSVRQAFRGGIT 392
Query: 101 AEQ------QNAHP------RVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPS 148
AEQ Q+AHP + + S+P V DQI+LWE++ NR T Y++F S
Sbjct: 393 AEQIISYLEQHAHPTMLTVEQAINSKSSLPPTVVDQIKLWENERNRFTYTEGVVYNQFLS 452
Query: 149 RDVFEAACDYAR 160
+ F DYA+
Sbjct: 453 QADFITLRDYAQ 464
>gi|66800623|ref|XP_629237.1| general transcription factor IIH, polypeptide 4 [Dictyostelium
discoideum AX4]
gi|74850716|sp|Q54C29.1|TF2H4_DICDI RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=TFIIH basal transcription factor complex subunit 4
gi|60462610|gb|EAL60813.1| general transcription factor IIH, polypeptide 4 [Dictyostelium
discoideum AX4]
Length = 483
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 83/132 (62%), Gaps = 6/132 (4%)
Query: 37 REYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFE 96
R QG++V+ETN+R+YAY++S L +L LF K+ Y+LPNL VG T+ES+ A
Sbjct: 320 RTQTQKEQGYIVLETNYRLYAYTSSSLQISLLSLFVKMLYRLPNLAVGIITRESIRTALI 379
Query: 97 NGITAEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 150
+GITA+Q N+HP A+ IP+ V +QI LWE++ NR+ T + Y+ FP+ D
Sbjct: 380 HGITADQIIDFVRHNSHPNAANSGQPIPDVVAEQILLWEAERNRITYTKSVLYNSFPTND 439
Query: 151 VFEAACDYARDR 162
+ A +A+++
Sbjct: 440 CYIATLKFAKEQ 451
>gi|268534706|ref|XP_002632484.1| Hypothetical protein CBG13719 [Caenorhabditis briggsae]
Length = 482
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 81/133 (60%), Gaps = 9/133 (6%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
S G V+VETNFR+YAY++S L I+ LF+++ Y+ ++ VG T+ES+ A ++GITA
Sbjct: 309 SNGKVIVETNFRVYAYTSSLLQLAIIALFTEMTYRFTDMSVGMITRESVRGALQHGITAA 368
Query: 103 Q------QNAHPR-VADRIP--SIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 153
Q NAHP+ VA P +P V DQIRLWE + R+++ A+ Y F S D +
Sbjct: 369 QIISFLRANAHPQCVATSGPVNCLPITVADQIRLWEDERRRMDLKDAYIYSHFESDDEYH 428
Query: 154 AACDYARDRSGLL 166
YA++R LL
Sbjct: 429 GVVRYAQERGILL 441
>gi|67541703|ref|XP_664619.1| hypothetical protein AN7015.2 [Aspergillus nidulans FGSC A4]
gi|40742471|gb|EAA61661.1| hypothetical protein AN7015.2 [Aspergillus nidulans FGSC A4]
gi|259483674|tpe|CBF79257.1| TPA: TFIIH and nucleotide excision repair factor 3 complexes
subunit (Tfb2), putative (AFU_orthologue; AFUA_4G04360)
[Aspergillus nidulans FGSC A4]
Length = 482
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 81/136 (59%), Gaps = 19/136 (13%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G T++S+ A E GITA+Q
Sbjct: 317 GFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKVTRQSIRRAIEMGITADQI 376
Query: 104 -----QNAHPRV------------ADRIPSI-PENVCDQIRLWESDLNRVEMTPAHYYDE 145
+AHP++ A PS+ P V DQIRLW+ + +RV+ T + +
Sbjct: 377 ISYLATHAHPQMRKHNVARSTSNQAGMPPSVLPPTVVDQIRLWQLERDRVKATAGFLFKD 436
Query: 146 FPSRDVFEAACDYARD 161
F S +EA C YA +
Sbjct: 437 FVSLAEYEAPCRYAEE 452
>gi|412992641|emb|CCO18621.1| predicted protein [Bathycoccus prasinos]
Length = 542
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 81/128 (63%), Gaps = 11/128 (8%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE-- 102
G ++VETNFR+YAY+ S+L E+LRLF++ +Y+LPN VG T++S+ +A GI+ +
Sbjct: 386 GHIIVETNFRVYAYTHSELETEVLRLFTRPDYKLPNAYVGMITRDSILDAMRAGISPDQI 445
Query: 103 ----QQNAHPR--VADR--IPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSR-DVFE 153
Q AHPR + R P++P VCDQIRLW DL RV+ Y +FP + + F+
Sbjct: 446 VNYLQTRAHPRCTIGKRPNHPAVPPTVCDQIRLWARDLYRVKADDCVMYTDFPMQGNQFQ 505
Query: 154 AACDYARD 161
A + AR+
Sbjct: 506 DAVNNARN 513
>gi|170120252|ref|XP_001891159.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164633568|gb|EDQ98188.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 475
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 81/130 (62%), Gaps = 12/130 (9%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+GF+V+ETN+R+YAY+ + L IL LF ++Y+ PNL+VGA T++S+ A NGI+A+Q
Sbjct: 311 EGFIVLETNYRIYAYTDNPLQTAILNLFVSLKYRFPNLVVGAITRDSVKKALLNGISADQ 370
Query: 104 ------QNAHPRVADRI------PSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDV 151
+AHP++ + P +P V DQIRLWE + NR++ + Y F S+
Sbjct: 371 IISYLMSHAHPQMRKNVRLRSCNPLLPVTVQDQIRLWELEKNRLKSQEGYLYTSFASQAD 430
Query: 152 FEAACDYARD 161
++ +YA++
Sbjct: 431 YDFVLNYAKE 440
>gi|315041383|ref|XP_003170068.1| TFIIH basal transcription factor complex p52 subunit [Arthroderma
gypseum CBS 118893]
gi|311345102|gb|EFR04305.1| TFIIH basal transcription factor complex p52 subunit [Arthroderma
gypseum CBS 118893]
Length = 484
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 78/130 (60%), Gaps = 14/130 (10%)
Query: 46 FVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ-- 103
F++VETN+R+YAY++S L ++ LF+ ++++ PNLI G T++S+ A E GITA+Q
Sbjct: 321 FIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITGKITRQSVRRAIEMGITADQIV 380
Query: 104 ----QNAHPRVADRIPS--------IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDV 151
+AHP++ S +P V DQIRLW+ + +R++ T + EF +
Sbjct: 381 SYLTTHAHPQMRKTKKSTTNVSSTVLPPTVVDQIRLWQLERDRIKATSGFLFKEFDTFAE 440
Query: 152 FEAACDYARD 161
FEA C YA +
Sbjct: 441 FEAPCKYAEE 450
>gi|340371925|ref|XP_003384495.1| PREDICTED: general transcription factor IIH subunit 4-like
[Amphimedon queenslandica]
Length = 446
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 76/132 (57%), Gaps = 6/132 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ GF++VETN+R+ AY+ SKLH L LF +++Y+ PN+ VG T+ES+ A +GI
Sbjct: 286 TSQAGFIIVETNYRVIAYTDSKLHIATLALFCQMQYRFPNVAVGTITRESIQQALVHGIK 345
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
A+Q Q+AH + + +P V DQI+LWE + NR+ Y EF S +E
Sbjct: 346 ADQIISFLTQHAHHNMLSKAHILPPTVTDQIKLWEIERNRLSFQEGILYSEFLSVTDYEK 405
Query: 155 ACDYARDRSGLL 166
YA D LL
Sbjct: 406 VKKYAEDLGVLL 417
>gi|406862938|gb|EKD15987.1| tfiih and nucleotide excision repair factor 3 complexes subunit
[Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 421
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 83/137 (60%), Gaps = 12/137 (8%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S ++GF+++ETN+R+YAY+ S L +L LF+K+ + PN++ G T++S+ NA +GIT
Sbjct: 254 SGTKGFIIIETNYRLYAYTNSPLQIAVLALFTKMGVRYPNMVTGRVTRKSVANAISHGIT 313
Query: 101 AEQ------QNAHPRVADRI-----PSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSR 149
++Q +AHP++ P +P V DQIRLW+ + R++ T + EF ++
Sbjct: 314 SDQIISYLRAHAHPQLVKAAAVNGNPVLPPTVVDQIRLWQIENERMKATAGFLFKEFETQ 373
Query: 150 DVFEAACDYARDRSGLL 166
+E YA D +G+L
Sbjct: 374 KEYEGCARYA-DENGVL 389
>gi|350639203|gb|EHA27557.1| transcription factor Tfb2 [Aspergillus niger ATCC 1015]
Length = 478
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 81/136 (59%), Gaps = 19/136 (13%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G T++S+ A E GITA+Q
Sbjct: 313 GFIIIETNYRVYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAVEMGITADQI 372
Query: 104 -----QNAHPRV------------ADRIPSI-PENVCDQIRLWESDLNRVEMTPAHYYDE 145
+AHP++ A PS+ P V DQIRLW+ + +RV+ T + +
Sbjct: 373 ISYLSTHAHPQMRKHNVSRSTSNQAGIPPSVLPPTVVDQIRLWQLERDRVKATSGFLFKD 432
Query: 146 FPSRDVFEAACDYARD 161
F S +EA C YA +
Sbjct: 433 FVSLAEYEAPCRYAEE 448
>gi|145248676|ref|XP_001400677.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus niger CBS 513.88]
gi|134081344|emb|CAK41847.1| unnamed protein product [Aspergillus niger]
Length = 478
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 81/136 (59%), Gaps = 19/136 (13%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G T++S+ A E GITA+Q
Sbjct: 313 GFIIIETNYRVYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAVEMGITADQI 372
Query: 104 -----QNAHPRV------------ADRIPSI-PENVCDQIRLWESDLNRVEMTPAHYYDE 145
+AHP++ A PS+ P V DQIRLW+ + +RV+ T + +
Sbjct: 373 ISYLSTHAHPQMRKHNVSRSTSNQAGIPPSVLPPTVVDQIRLWQLERDRVKATSGFLFKD 432
Query: 146 FPSRDVFEAACDYARD 161
F S +EA C YA +
Sbjct: 433 FVSLAEYEAPCRYAEE 448
>gi|388857860|emb|CCF48525.1| probable TFB2-TFIIH subunit (transcription/repair factor) [Ustilago
hordei]
Length = 492
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 78/123 (63%), Gaps = 6/123 (4%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+G++++ETN+R+YAY+++ L +L LF I+ + PNL+VG+ T++S+ +A NGITAEQ
Sbjct: 336 RGYIILETNYRLYAYTSNPLRVAVLSLFVTIKARFPNLVVGSITRDSVKSALANGITAEQ 395
Query: 104 ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 157
+AH ++ P +P V DQIRLWE + NRV + +F S+ FE +
Sbjct: 396 IITYLTHHAHVQMHRNDPLLPVTVSDQIRLWEREKNRVVQNLGSLFTDFTSQFDFEEVRN 455
Query: 158 YAR 160
YA+
Sbjct: 456 YAK 458
>gi|358370616|dbj|GAA87227.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus kawachii IFO 4308]
Length = 478
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 81/136 (59%), Gaps = 19/136 (13%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G T++S+ A E GITA+Q
Sbjct: 313 GFIIIETNYRVYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAVEMGITADQI 372
Query: 104 -----QNAHPRV------------ADRIPSI-PENVCDQIRLWESDLNRVEMTPAHYYDE 145
+AHP++ A PS+ P V DQIRLW+ + +RV+ T + +
Sbjct: 373 ISYLSTHAHPQMRKHNVSRSTSNQAGIPPSVLPPTVVDQIRLWQLERDRVKATSGFLFKD 432
Query: 146 FPSRDVFEAACDYARD 161
F S +EA C YA +
Sbjct: 433 FVSLAEYEAPCRYAEE 448
>gi|195126587|ref|XP_002007752.1| GI12214 [Drosophila mojavensis]
gi|193919361|gb|EDW18228.1| GI12214 [Drosophila mojavensis]
Length = 492
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 83/135 (61%), Gaps = 12/135 (8%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+G++VVETN+R+YAY+ S+L +L LF+++ Y+ PNL+VG T++S+ A GITAEQ
Sbjct: 327 RGYIVVETNYRVYAYTDSQLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQ 386
Query: 104 ------QNAHPR---VADRIPS---IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDV 151
Q AHP V I S +P V DQI+LWE + NR T Y++F S++
Sbjct: 387 IVSYLEQYAHPNMKLVESAIQSKSCLPPTVVDQIKLWEMERNRFTYTEGVVYNQFLSQND 446
Query: 152 FEAACDYARDRSGLL 166
F DYA+ ++ L+
Sbjct: 447 FVTLRDYAQSQNVLV 461
>gi|321470926|gb|EFX81900.1| hypothetical protein DAPPUDRAFT_210868 [Daphnia pulex]
Length = 463
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 80/132 (60%), Gaps = 7/132 (5%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S + G++VVETN+R+YAY+ S L ++ LF ++ Y+ PNL+VG T+ES+ A + GIT
Sbjct: 300 SQTTGYIVVETNYRVYAYTDSSLQVALIALFCELIYRFPNLVVGIITRESVREALKRGIT 359
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
A+Q Q+AH P +P + DQI+LW + +R Y++F S+ FE
Sbjct: 360 ADQIVSFLRQHAHSECYKEPPVLPSTIADQIKLWAIERDRFLYKDGVLYNQFDSQADFEI 419
Query: 155 ACDYARDRSGLL 166
+YA++R GLL
Sbjct: 420 LRNYAQER-GLL 430
>gi|195999048|ref|XP_002109392.1| hypothetical protein TRIADDRAFT_20428 [Trichoplax adhaerens]
gi|190587516|gb|EDV27558.1| hypothetical protein TRIADDRAFT_20428 [Trichoplax adhaerens]
Length = 452
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 8/134 (5%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S S G+++VETN+R+YAY+ S L ++ LF ++ Y+LP L VG T+ES+ AF NGIT
Sbjct: 289 SKSSGYIIVETNYRLYAYTESPLDIALVALFCEMMYRLPGLCVGLITRESVQQAFTNGIT 348
Query: 101 AEQ------QNAHPRVADRI--PSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF 152
A + +AHP ++ P +P + DQ+ LWE + R+ + Y++ S F
Sbjct: 349 ANKIINFIRTHAHPEAKKKVTTPIVPSTIIDQLYLWELERGRLSCSDGVLYNQILSSSDF 408
Query: 153 EAACDYARDRSGLL 166
EA YA D LL
Sbjct: 409 EALRKYADDMGVLL 422
>gi|115388809|ref|XP_001211910.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195994|gb|EAU37694.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 460
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 80/136 (58%), Gaps = 19/136 (13%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF++VETN+R+YAY++S L ++ LF+ ++Y+ PNLI G T++S+ A E GITA+Q
Sbjct: 295 GFIIVETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAIEMGITADQI 354
Query: 104 -----QNAHPRV------------ADRIPSI-PENVCDQIRLWESDLNRVEMTPAHYYDE 145
+AHP++ A PS+ P V DQIRLW+ + +RV+ T + +
Sbjct: 355 ISYLATHAHPQMRKHNVSRSTSNQAGIPPSVLPPTVVDQIRLWQLERDRVKATAGFLFKD 414
Query: 146 FPSRDVFEAACDYARD 161
F S +E C YA +
Sbjct: 415 FASLAEYEDPCRYAEE 430
>gi|328766914|gb|EGF76966.1| hypothetical protein BATDEDRAFT_92242 [Batrachochytrium
dendrobatidis JAM81]
Length = 471
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 37 REYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFE 96
R ++S GF+++ETN+R+YAY+ S L +L LF ++ + N+++G T++S+ A
Sbjct: 301 RSLEADSDGFIIIETNYRVYAYTDSPLQIAVLSLFIEMRVRFANMVIGIITRDSVREALA 360
Query: 97 NGITAEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 150
GI+AEQ +AHP + P +P + DQ+RLWE + NR+ ++ H Y F
Sbjct: 361 KGISAEQIIAYLTTHAHPEMKKGSPVLPTTIVDQVRLWEMERNRLRISRGHLYQMFSGEQ 420
Query: 151 VFEAACDYARD 161
+ YA D
Sbjct: 421 EYREILKYATD 431
>gi|402224480|gb|EJU04542.1| transcription factor Tfb2 [Dacryopinax sp. DJM-731 SS1]
Length = 466
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 80/129 (62%), Gaps = 6/129 (4%)
Query: 38 EYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFEN 97
E ++S+GF+++ETN+R+YAY+ + L +L LF + + NL++G T+ES+ A N
Sbjct: 303 EKAASSEGFIILETNYRVYAYTENPLQIAVLNLFVALHSRFENLVIGRLTRESIKAALAN 362
Query: 98 GITAEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDV 151
GITA+Q +AHP + P +P V DQIRLW+ + NR++ + Y++F S+
Sbjct: 363 GITADQIISYLTVHAHPMMHKNNPVLPVTVQDQIRLWQLEKNRLKSENGYLYEDFNSQGD 422
Query: 152 FEAACDYAR 160
F+ +YA+
Sbjct: 423 FDLVLNYAK 431
>gi|443894209|dbj|GAC71558.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit TFB2 [Pseudozyma antarctica
T-34]
Length = 491
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 77/122 (63%), Gaps = 6/122 (4%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+G++++ETN+R+YAY+++ L +L LF I+ + PNL+VG+ T++S+ +A NGITAEQ
Sbjct: 335 RGYIILETNYRLYAYTSNPLRVAVLSLFVTIKARFPNLLVGSITRDSVKSALANGITAEQ 394
Query: 104 ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 157
+AH ++ P +P V DQIRLWE + NRV+ + +F S+ F +
Sbjct: 395 IITYLTHHAHLQMHRNDPLLPVTVSDQIRLWEREKNRVQQNLGSLFTDFTSQPDFAEVRN 454
Query: 158 YA 159
YA
Sbjct: 455 YA 456
>gi|330797174|ref|XP_003286637.1| hypothetical protein DICPUDRAFT_31198 [Dictyostelium purpureum]
gi|325083385|gb|EGC36839.1| hypothetical protein DICPUDRAFT_31198 [Dictyostelium purpureum]
Length = 471
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 78/124 (62%), Gaps = 6/124 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G++V+ETN+R+YAY+ S L +L LF K+ Y+LPNL VG T+ES+ A +GITA+Q
Sbjct: 316 GYIVLETNYRLYAYTASSLQISLLSLFVKMLYRLPNLAVGIITRESIRTALIHGITADQI 375
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
NAHP + IP+ V +QI LWE + NR+ T + Y+ FP+ D + A +
Sbjct: 376 IDFIRHNAHPNAVNNGQPIPDVVAEQILLWEQERNRITYTKSVLYNSFPTTDCYHATLKF 435
Query: 159 ARDR 162
A+++
Sbjct: 436 AKEQ 439
>gi|342319113|gb|EGU11064.1| RNA polymerase II transcription factor B subunit 2 [Rhodotorula
glutinis ATCC 204091]
Length = 496
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 78/133 (58%), Gaps = 10/133 (7%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+GF+V+ETN+++YAY+++ L +L LF+ ++ + N + G T+ES+ NGITA Q
Sbjct: 321 KGFIVLETNYKLYAYTSNPLQIAVLGLFAHLKTRFANFVTGHITRESIRRGLANGITANQ 380
Query: 104 ------QNAHPRVADRIPS----IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 153
AHP++ + S +P V DQIRLWE + R++ T + YDEF S +E
Sbjct: 381 IISYLASRAHPQMRAQAGSDDKLLPITVVDQIRLWEHERRRIQTTEGYLYDEFSSTHDYE 440
Query: 154 AACDYARDRSGLL 166
+YAR+ +L
Sbjct: 441 LVVNYAREIGSVL 453
>gi|388581217|gb|EIM21527.1| transcription factor Tfb2 [Wallemia sebi CBS 633.66]
Length = 449
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 79/125 (63%), Gaps = 6/125 (4%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
+++ F+++ETN+R+YAY+++ L IL LF ++ + PNL++G T++S+ +A NGITA
Sbjct: 276 DNKRFIILETNYRLYAYTSNPLQISILNLFVTLKARYPNLVIGVITRDSIRSALSNGITA 335
Query: 102 EQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
EQ +AH ++ P +P V DQIRLWE + NR++ Y EF S+ +E
Sbjct: 336 EQIIGYLTSHAHTQMHRNNPLLPVTVSDQIRLWELEKNRLKADDGVLYAEFRSQPDYEIL 395
Query: 156 CDYAR 160
+YA+
Sbjct: 396 LNYAK 400
>gi|195378984|ref|XP_002048261.1| GJ11446 [Drosophila virilis]
gi|194155419|gb|EDW70603.1| GJ11446 [Drosophila virilis]
Length = 492
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 79/129 (61%), Gaps = 12/129 (9%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+G++VVETN+R+YAY+ S+L +L LF+++ Y+ PNL+VG T++S+ A GITAEQ
Sbjct: 327 RGYIVVETNYRVYAYTDSQLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQ 386
Query: 104 ------QNAHPR---VADRIPS---IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDV 151
Q AHP V I S +P + DQI+LWE + NR T Y++F S++
Sbjct: 387 IVSYLEQYAHPNMKLVESAIQSKSCLPPTIVDQIKLWEMERNRFTYTEGVVYNQFLSQND 446
Query: 152 FEAACDYAR 160
F DYA+
Sbjct: 447 FVTLRDYAQ 455
>gi|76154655|gb|AAX26095.2| SJCHGC05044 protein [Schistosoma japonicum]
Length = 214
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 82/154 (53%), Gaps = 7/154 (4%)
Query: 19 AIGQWELMDTNAQLWYIVREYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQL 78
+ Q + DTN L I S+ G++++ETNFR+YAY+ S L +L LFSKI +
Sbjct: 33 GVSQSDSSDTNKMLAQISVSS-SSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIRARF 91
Query: 79 PNLIVGATTKESLNNAFENGITAEQ------QNAHPRVADRIPSIPENVCDQIRLWESDL 132
PNL+V T++S+ A GITA Q NAHP + P +P + DQIRLWE +
Sbjct: 92 PNLVVADITRDSVREALIRGITANQILSFLTSNAHPDMLLSNPILPPTLTDQIRLWELER 151
Query: 133 NRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
+R Y+ F FE DYA++ LL
Sbjct: 152 DRFVFQEGCLYEHFSRNTDFELVRDYAKNIGVLL 185
>gi|50557260|ref|XP_506038.1| YALI0F30173p [Yarrowia lipolytica]
gi|62901293|sp|Q6BZX4.1|TFB2_YARLI RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|49651908|emb|CAG78851.1| YALI0F30173p [Yarrowia lipolytica CLIB122]
Length = 467
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 78/133 (58%), Gaps = 6/133 (4%)
Query: 40 ISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGI 99
++ GF+++ETNFR+YAY+ S L +L LF ++ + N++ G ++S+ A NGI
Sbjct: 300 VAADSGFIILETNFRLYAYTESPLQIAVLNLFVNLKTRFANMVTGQINRDSVRFALSNGI 359
Query: 100 TAEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 153
TAEQ +AHPR+ +P V DQI+LW+ +++R+ T + + EF + D ++
Sbjct: 360 TAEQIITYLSVHAHPRMKGMEHVLPPTVVDQIKLWQLEMDRIRATDGYLFSEFKNFDEYK 419
Query: 154 AACDYARDRSGLL 166
YA++ LL
Sbjct: 420 DVSTYAKELGVLL 432
>gi|195019521|ref|XP_001984999.1| GH16811 [Drosophila grimshawi]
gi|193898481|gb|EDV97347.1| GH16811 [Drosophila grimshawi]
Length = 493
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 78/129 (60%), Gaps = 12/129 (9%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+G++VVETN+R+YAY+ S+L +L LF+++ Y+ PNL+VG T++S+ A GITAEQ
Sbjct: 328 RGYIVVETNYRVYAYTDSQLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQ 387
Query: 104 ------QNAHPR---VADRIPS---IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDV 151
Q AHP V I S +P V DQI+LWE + NR T Y++F S+
Sbjct: 388 IVSYLEQYAHPNMKLVESAIQSKSCLPPTVVDQIKLWELERNRFTYTEGVVYNQFLSQTD 447
Query: 152 FEAACDYAR 160
F DYA+
Sbjct: 448 FVTLRDYAQ 456
>gi|156057729|ref|XP_001594788.1| hypothetical protein SS1G_04596 [Sclerotinia sclerotiorum 1980]
gi|154702381|gb|EDO02120.1| hypothetical protein SS1G_04596 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 420
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 78/133 (58%), Gaps = 12/133 (9%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
+N +GF+++ETN+R+YAY+ S L +L LF+K+ + PN++ G +++S+ A +GIT
Sbjct: 256 ANQKGFIIIETNYRLYAYTNSPLQIAVLSLFTKLNTRYPNMVSGRVSRDSIRTAISHGIT 315
Query: 101 AEQ------QNAHPRV------ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPS 148
++Q +AHP++ A P +P V DQIRLW+ + R++ P + EF
Sbjct: 316 SDQIITYLSTHAHPQLVKASTAAHGGPVLPPTVVDQIRLWQLENERMKAVPGFLFKEFDG 375
Query: 149 RDVFEAACDYARD 161
+ +E YA +
Sbjct: 376 QKEYEGCAKYAEE 388
>gi|119486893|ref|XP_001262366.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Neosartorya fischeri NRRL 181]
gi|119410523|gb|EAW20469.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Neosartorya fischeri NRRL 181]
Length = 468
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 19/136 (13%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G T++S+ A E GITA+Q
Sbjct: 302 GFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAVEMGITADQI 361
Query: 104 -----QNAHPRVADR-------------IPSIPENVCDQIRLWESDLNRVEMTPAHYYDE 145
+AHP++ + +P V DQIRLW+ + +RV+ T + +
Sbjct: 362 ISYLSTHAHPQMRKHNVSRSTSNQAGMPVSVLPPTVVDQIRLWQLERDRVKATHGFLFRD 421
Query: 146 FPSRDVFEAACDYARD 161
F + +EA C YA +
Sbjct: 422 FNTLAEYEAPCRYAEE 437
>gi|70982185|ref|XP_746621.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2) [Aspergillus fumigatus Af293]
gi|66844244|gb|EAL84583.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus fumigatus Af293]
gi|159122143|gb|EDP47265.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus fumigatus A1163]
Length = 479
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 19/136 (13%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G T++S+ A E GITA+Q
Sbjct: 313 GFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAVEMGITADQI 372
Query: 104 -----QNAHPRVADR-------------IPSIPENVCDQIRLWESDLNRVEMTPAHYYDE 145
+AHP++ + +P V DQIRLW+ + +RV+ T + +
Sbjct: 373 ISYLSTHAHPQMRKHNVSRSTSNQAGMPVSVLPPTVVDQIRLWQLERDRVKATHGFLFRD 432
Query: 146 FPSRDVFEAACDYARD 161
F + +EA C YA +
Sbjct: 433 FNTLAEYEAPCRYAEE 448
>gi|256086358|ref|XP_002579367.1| tfiih polypeptide [Schistosoma mansoni]
Length = 486
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 77/135 (57%), Gaps = 8/135 (5%)
Query: 40 ISNSQ--GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFEN 97
+SNS G++++ETNFR+YAY+ S L +L LFSKI + PNL+V T++S+ A
Sbjct: 323 VSNSSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIRARFPNLVVADITRDSVREALIR 382
Query: 98 GITAEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDV 151
GITA Q NAHP + + P +P + DQIRLWE + +R Y++F
Sbjct: 383 GITANQILSFLTANAHPDMLLQNPILPPTLTDQIRLWELERDRFLFQEGCLYEQFSRNTD 442
Query: 152 FEAACDYARDRSGLL 166
FE DYA+ LL
Sbjct: 443 FEMVRDYAKSIGVLL 457
>gi|195162678|ref|XP_002022181.1| GL25529 [Drosophila persimilis]
gi|198464237|ref|XP_001353141.2| GA20571 [Drosophila pseudoobscura pseudoobscura]
gi|194104142|gb|EDW26185.1| GL25529 [Drosophila persimilis]
gi|198149631|gb|EAL30642.2| GA20571 [Drosophila pseudoobscura pseudoobscura]
Length = 494
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 77/128 (60%), Gaps = 12/128 (9%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE-- 102
G++VVETN+R+YAY+ S L +L LF+++ Y+ PNL+VG T++S+ A GITAE
Sbjct: 330 GYIVVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQI 389
Query: 103 ----QQNAHPR---VADRIPS---IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF 152
QQ AHP V I S +P V DQI+LWE + NR T Y++F S++ F
Sbjct: 390 VSYLQQYAHPNMKLVESAIQSKSCLPPTVVDQIKLWEMERNRFTYTEGVVYNQFLSQNDF 449
Query: 153 EAACDYAR 160
DYA+
Sbjct: 450 VTLRDYAQ 457
>gi|353231086|emb|CCD77504.1| putative tfiih, polypeptide [Schistosoma mansoni]
Length = 486
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 77/135 (57%), Gaps = 8/135 (5%)
Query: 40 ISNSQ--GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFEN 97
+SNS G++++ETNFR+YAY+ S L +L LFSKI + PNL+V T++S+ A
Sbjct: 323 VSNSSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIRARFPNLVVADITRDSVREALIR 382
Query: 98 GITAEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDV 151
GITA Q NAHP + + P +P + DQIRLWE + +R Y++F
Sbjct: 383 GITANQILSFLTANAHPDMLLQNPILPPTLTDQIRLWELERDRFLFQEGCLYEQFSRNTD 442
Query: 152 FEAACDYARDRSGLL 166
FE DYA+ LL
Sbjct: 443 FEMVRDYAKSIGVLL 457
>gi|194749905|ref|XP_001957376.1| GF10392 [Drosophila ananassae]
gi|190624658|gb|EDV40182.1| GF10392 [Drosophila ananassae]
Length = 497
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 77/128 (60%), Gaps = 12/128 (9%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G++VVETN+R+YAY+ S L +L LF+++ Y+ PNL+VG T++S+ A GITAEQ
Sbjct: 333 GYIVVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQI 392
Query: 104 -----QNAHPR---VADRIPS---IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF 152
Q AHP V I S +P V DQI+LWE + NR T Y++F S++ F
Sbjct: 393 VSYLEQYAHPNMRLVESAIQSKSCLPPTVVDQIKLWEMERNRFTYTEGVVYNQFLSQNDF 452
Query: 153 EAACDYAR 160
DYA+
Sbjct: 453 VTLRDYAQ 460
>gi|307177222|gb|EFN66420.1| General transcription factor IIH subunit 4 [Camponotus floridanus]
Length = 467
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 79/126 (62%), Gaps = 7/126 (5%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ +G++VVETN+R+YAY+ S L +L LF ++ Y+ PN++V T++S+ A ++GIT
Sbjct: 304 TDKEGYIVVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNVVVSILTRDSIRQALKSGIT 363
Query: 101 AE------QQNAHPRVADRIPSI-PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 153
A QQ+ H ++ +R P I P + DQI+LWE++ NR + Y +F S+ FE
Sbjct: 364 ASQIVGYLQQHVHSKMIERGPPILPPTIVDQIKLWENERNRFLFSEGVLYSQFLSQTDFE 423
Query: 154 AACDYA 159
D+A
Sbjct: 424 VLRDHA 429
>gi|425777809|gb|EKV15965.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Penicillium digitatum PHI26]
gi|425782577|gb|EKV20476.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Penicillium digitatum Pd1]
Length = 382
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 78/131 (59%), Gaps = 17/131 (12%)
Query: 46 FVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ-- 103
F+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G T++S+ A E GITA+Q
Sbjct: 216 FIIIETNYRLYAYTSSPLQISLISLFTNLKYRFPNLVTGKITRQSVRRAIEMGITADQII 275
Query: 104 ----QNAHPRV---------ADRIPS--IPENVCDQIRLWESDLNRVEMTPAHYYDEFPS 148
+AHP++ IP+ +P V DQIRLW+ + +R+ T + +F S
Sbjct: 276 SYLLSHAHPQLRKHSAAQSNGKGIPASVLPPTVTDQIRLWQLERDRLRATAGFLFKDFTS 335
Query: 149 RDVFEAACDYA 159
++A C YA
Sbjct: 336 LAEYQAPCQYA 346
>gi|91094191|ref|XP_971121.1| PREDICTED: similar to TFIIH basal transcription factor complex p52
subunit [Tribolium castaneum]
gi|270010854|gb|EFA07302.1| hypothetical protein TcasGA2_TC015892 [Tribolium castaneum]
Length = 472
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 81/131 (61%), Gaps = 8/131 (6%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+G+++VETN+R+YAY+ S L ++ LF+++ Y+ PNL+VG T++S+ A + GITA+Q
Sbjct: 312 KGYIIVETNYRVYAYTDSNLQVALIGLFTELMYRFPNLVVGVITRDSIRQALKGGITADQ 371
Query: 104 ------QNAHPRV--ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
Q+AHP++ + +P V DQI+LWE + NR+ + Y +F S+ F
Sbjct: 372 IIGYLKQHAHPQMLEGEAKHPLPPTVVDQIKLWEIERNRLTYSEGVLYSQFLSQADFNIL 431
Query: 156 CDYARDRSGLL 166
+YA+ L+
Sbjct: 432 KEYAQSNGHLI 442
>gi|431907067|gb|ELK11185.1| General transcription factor IIH subunit 4 [Pteropus alecto]
Length = 447
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 73/117 (62%), Gaps = 10/117 (8%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQQ 104
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q
Sbjct: 306 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQ- 364
Query: 105 NAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 161
P +P + DQIRLWE + +R+ T Y++F S+ FE +AR+
Sbjct: 365 ---------TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARE 412
>gi|195477962|ref|XP_002086438.1| GE22864 [Drosophila yakuba]
gi|194186228|gb|EDW99839.1| GE22864 [Drosophila yakuba]
Length = 241
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 75/128 (58%), Gaps = 12/128 (9%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G++VVETN+R+YAY+ S L +L LF+++ Y+ PNL+VG T++S+ A GITAEQ
Sbjct: 77 GYIVVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQI 136
Query: 104 -----QNAHPR---VADRIPS---IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF 152
Q AHP V I S +P V DQI+LWE + NR T Y++F S F
Sbjct: 137 VSYLEQYAHPNMRLVESAIQSKSCLPPTVVDQIKLWELERNRFTYTEGVVYNQFLSHTDF 196
Query: 153 EAACDYAR 160
DYA+
Sbjct: 197 VTLRDYAQ 204
>gi|255936123|ref|XP_002559088.1| Pc13g06540 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583708|emb|CAP91723.1| Pc13g06540 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 483
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 78/131 (59%), Gaps = 17/131 (12%)
Query: 46 FVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ-- 103
F+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G T++S+ A E GITA+Q
Sbjct: 317 FIIIETNYRLYAYTSSPLQISLISLFTNLKYRFPNLVTGKITRQSVRRAIEMGITADQII 376
Query: 104 ----QNAHPRV---------ADRIPS--IPENVCDQIRLWESDLNRVEMTPAHYYDEFPS 148
+AHP++ +P+ +P V DQIRLW+ + +R+ T + +F S
Sbjct: 377 SYLLSHAHPQLRKHSAAQPNGKGVPASVLPPTVTDQIRLWQLERDRLRATAGFLFKDFTS 436
Query: 149 RDVFEAACDYA 159
++A C YA
Sbjct: 437 LAEYQAPCQYA 447
>gi|358333989|dbj|GAA34589.2| transcription initiation factor TFIIH subunit 4 [Clonorchis
sinensis]
Length = 456
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G++++ETNFR+YAY+ S L +L LFSKI + PNL+V T++S+ A GITA+Q
Sbjct: 300 GYILLETNFRLYAYTDSPLRTALLSLFSKIRARFPNLVVADITRDSVREALIRGITADQI 359
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
NAHP + P +P + DQIRLWE + +R Y++F FE D+
Sbjct: 360 ISFLTTNAHPDMLREPPILPPTLVDQIRLWELERDRFVFQEGCLYEQFSKSADFEMVRDF 419
Query: 159 AR 160
A+
Sbjct: 420 AK 421
>gi|195441209|ref|XP_002068409.1| GK20438 [Drosophila willistoni]
gi|194164494|gb|EDW79395.1| GK20438 [Drosophila willistoni]
Length = 512
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 75/129 (58%), Gaps = 12/129 (9%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+G++VVETN+R+YAY+ S L +L LF+++ Y+ PNL+VG T++S+ A GITAEQ
Sbjct: 347 RGYIVVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQ 406
Query: 104 ------QNAHPRVA------DRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDV 151
Q AHP + + +P V DQI+LWE + NR T Y++F S
Sbjct: 407 IISYLEQYAHPNMKLVESAINSKSCLPPTVVDQIKLWEMERNRFTYTEGVVYNQFLSTTD 466
Query: 152 FEAACDYAR 160
F DYA+
Sbjct: 467 FVTLRDYAQ 475
>gi|328863850|gb|EGG12949.1| hypothetical protein MELLADRAFT_46475 [Melampsora larici-populina
98AG31]
Length = 454
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 78/126 (61%), Gaps = 6/126 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S+ F+++ETN+R+YAY+++ L IL LF + + PNL++G+ T+ES+ AF+NGI
Sbjct: 291 SDPNEFLILETNYRIYAYTSNPLQIAILNLFISFKSRFPNLVIGSITRESIKMAFKNGIR 350
Query: 101 AEQQ------NAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
A+Q ++H ++ P +P V DQIRLWE + NRV + Y++F S +E
Sbjct: 351 ADQIISYLEFHSHSQMKLLKPILPNTVVDQIRLWELEKNRVRDQEGYLYEDFKSVSDYEI 410
Query: 155 ACDYAR 160
+Y++
Sbjct: 411 VINYSK 416
>gi|195477975|ref|XP_002086439.1| GE22863 [Drosophila yakuba]
gi|194186229|gb|EDW99840.1| GE22863 [Drosophila yakuba]
Length = 499
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 75/128 (58%), Gaps = 12/128 (9%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G++VVETN+R+YAY+ S L +L LF+++ Y+ PNL+VG T++S+ A GITAEQ
Sbjct: 335 GYIVVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQI 394
Query: 104 -----QNAHPR---VADRIPS---IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF 152
Q AHP V I S +P V DQI+LWE + NR T Y++F S F
Sbjct: 395 VSYLEQYAHPNMRLVESAIQSKSCLPPTVVDQIKLWELERNRFTYTEGVVYNQFLSHTDF 454
Query: 153 EAACDYAR 160
DYA+
Sbjct: 455 VTLRDYAQ 462
>gi|194872905|ref|XP_001973103.1| GG13537 [Drosophila erecta]
gi|190654886|gb|EDV52129.1| GG13537 [Drosophila erecta]
Length = 499
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 75/128 (58%), Gaps = 12/128 (9%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G++VVETN+R+YAY+ S L +L LF+++ Y+ PNL+VG T++S+ A GITAEQ
Sbjct: 335 GYIVVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQI 394
Query: 104 -----QNAHPR---VADRIPS---IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF 152
Q AHP V I S +P V DQI+LWE + NR T Y++F S F
Sbjct: 395 VSYLEQYAHPNMRMVESAIQSKSCLPPTVVDQIKLWELERNRFTYTEGVVYNQFLSHTDF 454
Query: 153 EAACDYAR 160
DYA+
Sbjct: 455 VTLRDYAQ 462
>gi|16198089|gb|AAL13841.1| LD30622p [Drosophila melanogaster]
Length = 350
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 75/128 (58%), Gaps = 12/128 (9%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G++VVETN+R+YAY+ S L +L LF+++ Y+ PNL+VG T++S+ A GITAEQ
Sbjct: 186 GYIVVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQI 245
Query: 104 -----QNAHPR---VADRIPS---IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF 152
Q AHP V I S +P V DQI+LWE + NR T Y++F S F
Sbjct: 246 VSYLEQYAHPNMRMVESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQFLSHTDF 305
Query: 153 EAACDYAR 160
DYA+
Sbjct: 306 VTLRDYAQ 313
>gi|346464903|gb|AEO32296.1| hypothetical protein [Amblyomma maculatum]
Length = 436
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 75/132 (56%), Gaps = 6/132 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S G+++VETN+R+YAY+ S+L +L LF ++ Y+ PNL+V T+ES+ A +GIT
Sbjct: 297 SYEAGYIMVETNYRVYAYTNSQLQVALLALFCELLYRFPNLVVARLTRESVRQALRSGIT 356
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
+ Q AHP + P IP + DQ+RLWE + +R Y +F S+ F+
Sbjct: 357 SNQIIKFLRMYAHPEALKQTPVIPATIMDQLRLWELERDRFVYREGVLYSQFISQSDFQL 416
Query: 155 ACDYARDRSGLL 166
+YA D L+
Sbjct: 417 LRNYASDLGVLI 428
>gi|195590491|ref|XP_002084979.1| GD12553 [Drosophila simulans]
gi|194196988|gb|EDX10564.1| GD12553 [Drosophila simulans]
Length = 500
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 75/128 (58%), Gaps = 12/128 (9%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G++VVETN+R+YAY+ S L +L LF+++ Y+ PNL+VG T++S+ A GITAEQ
Sbjct: 336 GYIVVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQI 395
Query: 104 -----QNAHPR---VADRIPS---IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF 152
Q AHP V I S +P V DQI+LWE + NR T Y++F S F
Sbjct: 396 VSYLEQYAHPNMRMVESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQFLSHTDF 455
Query: 153 EAACDYAR 160
DYA+
Sbjct: 456 VTLRDYAQ 463
>gi|195327811|ref|XP_002030611.1| GM24480 [Drosophila sechellia]
gi|194119554|gb|EDW41597.1| GM24480 [Drosophila sechellia]
Length = 499
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 75/128 (58%), Gaps = 12/128 (9%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G++VVETN+R+YAY+ S L +L LF+++ Y+ PNL+VG T++S+ A GITAEQ
Sbjct: 335 GYIVVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQI 394
Query: 104 -----QNAHPR---VADRIPS---IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF 152
Q AHP V I S +P V DQI+LWE + NR T Y++F S F
Sbjct: 395 VSYLEQYAHPNMRMVESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQFLSHTDF 454
Query: 153 EAACDYAR 160
DYA+
Sbjct: 455 VTLRDYAQ 462
>gi|21357821|ref|NP_648780.1| marionette [Drosophila melanogaster]
gi|7294263|gb|AAF49614.1| marionette [Drosophila melanogaster]
gi|220942562|gb|ACL83824.1| Tfb2-PA [synthetic construct]
Length = 499
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 75/128 (58%), Gaps = 12/128 (9%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G++VVETN+R+YAY+ S L +L LF+++ Y+ PNL+VG T++S+ A GITAEQ
Sbjct: 335 GYIVVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQI 394
Query: 104 -----QNAHPR---VADRIPS---IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF 152
Q AHP V I S +P V DQI+LWE + NR T Y++F S F
Sbjct: 395 VSYLEQYAHPNMRMVESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQFLSHTDF 454
Query: 153 EAACDYAR 160
DYA+
Sbjct: 455 VTLRDYAQ 462
>gi|383852611|ref|XP_003701820.1| PREDICTED: general transcription factor IIH subunit 4-like
[Megachile rotundata]
Length = 467
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 78/125 (62%), Gaps = 7/125 (5%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
+ +G++VVETN+R+YAY+ S L +L LF ++ Y+ PNL+V T++S+ A ++GITA
Sbjct: 305 DKEGYIVVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALKSGITA 364
Query: 102 E------QQNAHPRVADRIPSI-PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
QQ+AH ++ + P + P + DQI+LWE++ NR + Y +F S+ FE
Sbjct: 365 SQIVGYLQQHAHSKMIEAGPPVLPPTIVDQIKLWENERNRFIFSEGVLYSQFLSQTDFEV 424
Query: 155 ACDYA 159
D+A
Sbjct: 425 LRDHA 429
>gi|380014187|ref|XP_003691121.1| PREDICTED: general transcription factor IIH subunit 4-like [Apis
florea]
Length = 467
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 77/124 (62%), Gaps = 7/124 (5%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
+G++VVETN+R+YAY+ S L +L LF ++ Y+ PNL+V T++S+ A ++GITA
Sbjct: 306 KEGYIVVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALKSGITAT 365
Query: 103 ------QQNAHPRVADRIPSI-PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
QQ+AH ++ + P I P + DQI+LWE++ NR + Y +F S+ FE
Sbjct: 366 QIVGYLQQHAHSKMIEAGPPILPPTIVDQIKLWENERNRFIFSEGVLYSQFLSQTDFEVL 425
Query: 156 CDYA 159
D+A
Sbjct: 426 RDHA 429
>gi|48102983|ref|XP_395476.1| PREDICTED: general transcription factor IIH subunit 4 [Apis
mellifera]
Length = 467
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 77/124 (62%), Gaps = 7/124 (5%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
+G++VVETN+R+YAY+ S L +L LF ++ Y+ PNL+V T++S+ A ++GITA
Sbjct: 306 KEGYIVVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALKSGITAT 365
Query: 103 ------QQNAHPRVADRIPSI-PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
QQ+AH ++ + P I P + DQI+LWE++ NR + Y +F S+ FE
Sbjct: 366 QIVGYLQQHAHSKMIEAGPPILPPTIVDQIKLWENERNRFIFSEGVLYSQFLSQTDFEVL 425
Query: 156 CDYA 159
D+A
Sbjct: 426 RDHA 429
>gi|332030486|gb|EGI70174.1| General transcription factor IIH subunit 4 [Acromyrmex echinatior]
Length = 550
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 79/126 (62%), Gaps = 7/126 (5%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ +G+++VETN+R+YAY+ S L +L LF ++ Y+ PN++V T++S+ A ++GIT
Sbjct: 304 TDKEGYIIVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNVVVSILTRDSVRQALKSGIT 363
Query: 101 AEQ------QNAHPRVADRIPSI-PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 153
A Q Q+AH ++ + P I P + DQI+LWE++ NR + Y +F S+ FE
Sbjct: 364 ASQIVGYLRQHAHSKMIEAGPPILPPTIVDQIKLWENERNRFLFSEGVLYSQFLSQTDFE 423
Query: 154 AACDYA 159
D+A
Sbjct: 424 VLRDHA 429
>gi|296422658|ref|XP_002840876.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637102|emb|CAZ85067.1| unnamed protein product [Tuber melanosporum]
Length = 460
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 73/125 (58%), Gaps = 6/125 (4%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
+GF+++ETN+R+YAY+ S L +L LF K+ + PNL+ G ++ S+ A + GITA+
Sbjct: 296 GKGFIILETNYRVYAYTDSPLQIAVLNLFVKLSTRYPNLVSGRISRRSIQEAIKMGITAD 355
Query: 103 Q------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAAC 156
Q +AHP++ + ++P V DQIRLW+ + R+ T + +F S FE
Sbjct: 356 QVIDYLSAHAHPQMRKSLVTLPPTVVDQIRLWQIEGERMRTTTGFLFKDFHSTQEFEEVA 415
Query: 157 DYARD 161
YA +
Sbjct: 416 KYAEE 420
>gi|50310215|ref|XP_455127.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|62901296|sp|Q6CLR2.1|TFB2_KLULA RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|49644263|emb|CAG97834.1| KLLA0F01056p [Kluyveromyces lactis]
Length = 496
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 78/146 (53%), Gaps = 24/146 (16%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G +++ETNF++Y+YS S L IL LF ++ + N++ G T+ES+ NA NGITAEQ
Sbjct: 322 GALIIETNFKLYSYSNSPLQIAILSLFVHLKSRFANMVTGQLTRESVRNALLNGITAEQI 381
Query: 104 -----QNAHPR------------------VADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHPR V + + +P V DQIRLW+ +L+R+
Sbjct: 382 IAYLETHAHPRMRRLAEENLSKKLELDPTVKETLQVLPPTVVDQIRLWQLELDRIISYDG 441
Query: 141 HYYDEFPSRDVFEAACDYARDRSGLL 166
+ Y +F S ++ DYA+D LL
Sbjct: 442 YLYTDFESYQEYQTVADYAKDIGVLL 467
>gi|427785675|gb|JAA58289.1| Putative rna polymer [Rhipicephalus pulchellus]
Length = 457
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 6/128 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G+++VETN+R+YAY+ S+L +L LF ++ Y+ PNL+V T+ES+ A +GIT+ Q
Sbjct: 300 GYIMVETNYRVYAYTNSQLQVALLALFCELLYRFPNLVVARLTRESVRQALRSGITSNQI 359
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
AHP + P IP + DQ+RLWE + +R Y +F S+ F+ +Y
Sbjct: 360 IKFLRMYAHPEALKQTPVIPATIMDQLRLWEMERDRFVFREGVLYSQFISQSDFQLLRNY 419
Query: 159 ARDRSGLL 166
A + L+
Sbjct: 420 ASELGVLI 427
>gi|350413829|ref|XP_003490125.1| PREDICTED: general transcription factor IIH subunit 4-like [Bombus
impatiens]
Length = 467
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 77/124 (62%), Gaps = 7/124 (5%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
+G++VVETN+R+YAY+ S L +L LF ++ Y+ PNL+V T++S+ A ++GITA
Sbjct: 306 KEGYIVVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALKSGITAA 365
Query: 103 ------QQNAHPRVADRIPSI-PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
QQ+AH ++ + P + P + DQI+LWE++ NR + Y +F S+ FE
Sbjct: 366 QIVGYLQQHAHGKMIEAGPPVLPPTIVDQIKLWENERNRFIFSEGVLYSQFLSQTDFEVL 425
Query: 156 CDYA 159
D+A
Sbjct: 426 RDHA 429
>gi|307212060|gb|EFN87943.1| General transcription factor IIH subunit 4 [Harpegnathos saltator]
Length = 467
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 77/126 (61%), Gaps = 7/126 (5%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ +G++VVETN+R+YAY+ S L +L LF ++ Y+ PNL+V T++S+ A ++GIT
Sbjct: 304 TDKEGYIVVETNYRVYAYTNSNLQVALLGLFCEMIYRFPNLVVSILTRDSVRQALKSGIT 363
Query: 101 AE------QQNAHPRVADRIPSI-PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 153
A QQ+AH + + P I P + DQI LWE++ NR + Y +F S+ FE
Sbjct: 364 ATQIVGYLQQHAHSKTIEAGPPILPPTIVDQIMLWENERNRFLFSEGVLYSQFLSQTDFE 423
Query: 154 AACDYA 159
D+A
Sbjct: 424 VLRDHA 429
>gi|221120480|ref|XP_002159945.1| PREDICTED: general transcription factor IIH subunit 4-like [Hydra
magnipapillata]
Length = 458
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 77/132 (58%), Gaps = 6/132 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S QGF+VVETN+R+YAY+ S LH +L LF+ I+ + P+ V ++ES+ A GI+
Sbjct: 298 SQQQGFLVVETNYRVYAYTDSVLHIALLSLFTDIKARFPSFTVALLSRESVQQALACGIS 357
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
AEQ AH ++ P I + DQI+LWE + +R+ + Y++F S+ FE
Sbjct: 358 AEQIIDFLKTRAHSQMTTSSPIIASTITDQIKLWEMERDRLRYSQGVLYNQFLSQSDFEM 417
Query: 155 ACDYARDRSGLL 166
+A +++ LL
Sbjct: 418 LRKFADEKNHLL 429
>gi|339237219|ref|XP_003380164.1| general transcription factor IIH subunit 4 [Trichinella spiralis]
gi|316977049|gb|EFV60220.1| general transcription factor IIH subunit 4 [Trichinella spiralis]
Length = 674
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 6/129 (4%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+GF++VETNFR+Y Y+ S L I+ F + Y+ PNL+ +ES+ AF+ I+AEQ
Sbjct: 292 EGFLIVETNFRVYCYTDSVLDLAIVSTFCEPLYRFPNLVACILNRESVRRAFQVNISAEQ 351
Query: 104 ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 157
NAH + + P+IP V DQI+LWE + +R + P Y F S + D
Sbjct: 352 IIQYLFSNAHKNMQKQTPTIPSTVTDQIKLWEMERDRFKFDPGVMYSNFFSDTDYITIRD 411
Query: 158 YARDRSGLL 166
YA+D LL
Sbjct: 412 YAKDLGVLL 420
>gi|340710070|ref|XP_003393621.1| PREDICTED: general transcription factor IIH subunit 4-like [Bombus
terrestris]
Length = 467
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 76/124 (61%), Gaps = 7/124 (5%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
+G++VVETN+R+YAY+ S L +L LF ++ Y+ PNL+V T++S+ A ++GITA
Sbjct: 306 KEGYIVVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALKSGITAA 365
Query: 103 ------QQNAHPRVADRIPSI-PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
QQ+AH ++ + P + P + DQI+LWE++ NR Y +F S+ FE
Sbjct: 366 QIVGYLQQHAHGKMIEAGPPVLPPTIVDQIKLWENERNRFIFNEGVLYSQFLSQTDFEVL 425
Query: 156 CDYA 159
D+A
Sbjct: 426 RDHA 429
>gi|391335225|ref|XP_003741996.1| PREDICTED: general transcription factor IIH subunit 4-like
[Metaseiulus occidentalis]
Length = 457
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 75/128 (58%), Gaps = 7/128 (5%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
+ QG+++VETN+R+YAY+ S L +L LF ++ Y+ PNL+V T+ES+ A + GIT
Sbjct: 294 KDEQGYIIVETNYRVYAYTDSPLQVALLSLFCELLYRFPNLLVAVLTRESVRQALKGGIT 353
Query: 101 AEQ------QNAHPRVADRIPS-IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 153
+ Q +H V +R IP V DQ+RLWE + +R + + Y +F + FE
Sbjct: 354 SNQITHFLKSRSHRVVLEREEGIIPMTVTDQLRLWELERDRFKFGESVLYSQFQTTGDFE 413
Query: 154 AACDYARD 161
+YARD
Sbjct: 414 MLRNYARD 421
>gi|339521903|gb|AEJ84116.1| general transcription factor IIH subunit 4 [Capra hircus]
Length = 463
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 76/127 (59%), Gaps = 6/127 (4%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ GF+VVETN+R+YAY+ +L + LFS++ Y+ PN++V T+ S+ A +GIT
Sbjct: 302 AHQPGFIVVETNYRLYAYTEPELQIARIALFSEMLYRFPNMVVPQVTRGSVQQAIASGIT 361
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
A+Q A P + + P +P + DQIRLWE + +R+ T Y++F S+ FE
Sbjct: 362 AQQIVHFLRTRADPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFEL 421
Query: 155 ACDYARD 161
+AR+
Sbjct: 422 LLAHARE 428
>gi|378729002|gb|EHY55461.1| transcription initiation factor TFIIH subunit H4 [Exophiala
dermatitidis NIH/UT8656]
Length = 508
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 79/141 (56%), Gaps = 21/141 (14%)
Query: 46 FVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ-- 103
F++VETN+R+YAY++S L +L LF + + PNL+ G +K S+ A + GITA+Q
Sbjct: 338 FIIVETNYRLYAYTSSPLQIALLSLFVNLRSRHPNLVTGKMSKSSVQRAIQAGITADQII 397
Query: 104 ----QNAHP-----------RVAD---RIPSIPENVCDQIRLWESDLNRVEMTPAHYYDE 145
+AHP R AD +P +P + DQI LW+ + +R+ TP +
Sbjct: 398 SYLTSHAHPQMRRHAQAEQARNADPNRVVPILPATILDQIHLWQLERDRMTTTPGFLLKD 457
Query: 146 FPSRDVFEAACDYARDRSGLL 166
FP++ +EA C YA D G+L
Sbjct: 458 FPNQADYEAPCRYA-DEIGVL 477
>gi|452839401|gb|EME41340.1| hypothetical protein DOTSEDRAFT_156149 [Dothistroma septosporum
NZE10]
Length = 497
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 12/137 (8%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S+ +GF+++ETN+R+YAY++S L IL LF+ + + PNLI TK S NA GIT
Sbjct: 318 SDEKGFIILETNYRLYAYTSSPLLISILSLFASLNTRYPNLITAKITKASTQNAIAAGIT 377
Query: 101 AEQ------QNAHPRV-----ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSR 149
++Q +AHP + A+ P +P V DQI+LW+ + R+E T + + S+
Sbjct: 378 SDQIIDYLTTHAHPVLRRQAAANDAPILPPTVVDQIKLWQMEGERMEATKGYLIRDIGSQ 437
Query: 150 DVFEAACDYARDRSGLL 166
+ ++ A +YA D G+L
Sbjct: 438 EEYDKAVNYA-DAIGVL 453
>gi|345492819|ref|XP_001602702.2| PREDICTED: general transcription factor IIH subunit 4-like [Nasonia
vitripennis]
Length = 428
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 76/121 (62%), Gaps = 7/121 (5%)
Query: 46 FVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ-- 103
FV+VETN+R+YAY+ S L ++ LF ++ Y+ PNL+V T++S+ A ++GITA Q
Sbjct: 270 FVIVETNYRVYAYTNSNLQVALIGLFCELLYRFPNLVVAILTRDSVRAALKSGITAVQIV 329
Query: 104 ----QNAHPRVAD-RIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
Q+AH ++ D P++P + DQI+LWE++ NR + Y +F S+ FE D+
Sbjct: 330 GYLNQHAHNKMIDPGPPTLPPTIVDQIKLWENERNRFIFSEGVLYSQFHSQIDFEVLRDH 389
Query: 159 A 159
A
Sbjct: 390 A 390
>gi|402465832|gb|EJW01474.1| hypothetical protein EDEG_03937 [Edhazardia aedis USNM 41457]
Length = 465
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 79/124 (63%), Gaps = 2/124 (1%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
S+ F+ +ETNF++YAY+TSK + IL LFSKI +LPNLI ++S+N AF+ I+A+
Sbjct: 315 SESFMYIETNFKLYAYTTSKYDFSILSLFSKISCKLPNLISAIINEDSVNTAFDKKISAK 374
Query: 103 QQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDR 162
Q + + + + ++P+NV +Q+ +WES NR++ + + F + F+ A D +++
Sbjct: 375 QISYYLKSKGK--NVPKNVVEQVYIWESKRNRIKTSECTLFKGFLNLMDFKKAVDVCKEK 432
Query: 163 SGLL 166
L+
Sbjct: 433 HWLV 436
>gi|405952750|gb|EKC20525.1| General transcription factor IIH subunit 4 [Crassostrea gigas]
Length = 380
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 10/127 (7%)
Query: 40 ISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGI 99
+ + G+++VETN+R+YAY+ S L ++ LF ++ Y+ P VG T+ S+ +A GI
Sbjct: 233 VGKNTGYLMVETNYRVYAYTDSPLQVALVALFCEMLYRFPTFSVGNLTRVSVRDALIRGI 292
Query: 100 TAEQQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYA 159
TA+Q P IP V DQ+RLWE + +R + YD+F S++ FE DYA
Sbjct: 293 TADQ----------TPVIPSTVTDQVRLWELERDRFKFMEGVLYDQFLSQNDFELLRDYA 342
Query: 160 RDRSGLL 166
+D LL
Sbjct: 343 KDLGVLL 349
>gi|347830304|emb|CCD46001.1| similar to RNA polymerase II transcription factor B subunit 2
[Botryotinia fuckeliana]
Length = 471
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 77/133 (57%), Gaps = 12/133 (9%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ +GF+++ETN+R+YAY+ S L +L LF+K+ + PN++ G +++S+ A +GIT
Sbjct: 307 ASQKGFIIIETNYRLYAYTNSPLQIAVLSLFTKLNTRYPNMVSGRVSRDSIRTAIAHGIT 366
Query: 101 AEQ------QNAHPRVADRI------PSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPS 148
++Q +AHP++ P +P V DQIRLW+ + R++ P +F +
Sbjct: 367 SDQIITYLSTHAHPQLVKASSASHGGPVLPPTVVDQIRLWQLENERMKAVPGFLMKDFET 426
Query: 149 RDVFEAACDYARD 161
+ +E YA +
Sbjct: 427 QKEYEGCAKYAEE 439
>gi|154308354|ref|XP_001553513.1| hypothetical protein BC1G_08237 [Botryotinia fuckeliana B05.10]
Length = 410
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 77/133 (57%), Gaps = 12/133 (9%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ +GF+++ETN+R+YAY+ S L +L LF+K+ + PN++ G +++S+ A +GIT
Sbjct: 246 ASQKGFIIIETNYRLYAYTNSPLQIAVLSLFTKLNTRYPNMVSGRVSRDSIRTAIAHGIT 305
Query: 101 AEQ------QNAHPRVADRI------PSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPS 148
++Q +AHP++ P +P V DQIRLW+ + R++ P +F +
Sbjct: 306 SDQIITYLSTHAHPQLVKASSASHGGPVLPPTVVDQIRLWQLENERMKAVPGFLMKDFET 365
Query: 149 RDVFEAACDYARD 161
+ +E YA +
Sbjct: 366 QKEYEGCAKYAEE 378
>gi|255079788|ref|XP_002503474.1| predicted protein [Micromonas sp. RCC299]
gi|226518741|gb|ACO64732.1| predicted protein [Micromonas sp. RCC299]
Length = 458
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 68/116 (58%), Gaps = 8/116 (6%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
+ G ++ ETNFR+YAY+ S + EILRLF++ +Y+LPNL VG T+E+++ A + G+
Sbjct: 305 GDPGGHIIAETNFRVYAYTFSDVECEILRLFTRPDYRLPNLYVGMLTREAVHEALDTGVA 364
Query: 101 AEQ------QNAHP--RVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPS 148
AEQ +AHP R IP NV DQI LW + RV Y +FP+
Sbjct: 365 AEQIIKYIKSHAHPNARKTTNGSGIPPNVADQIMLWAMERRRVRSAECVLYCDFPT 420
>gi|171681598|ref|XP_001905742.1| hypothetical protein [Podospora anserina S mat+]
gi|170940758|emb|CAP66407.1| unnamed protein product [Podospora anserina S mat+]
Length = 540
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 11/130 (8%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ G +VVETN+R+YAY++S L IL+LF ++ + PN++ T+ES+ A + GIT
Sbjct: 376 ADENGGIVVETNYRIYAYTSSPLQIAILKLFCRLHMRFPNMVTARLTRESVQEAIKEGIT 435
Query: 101 AEQ------QNAHPRV-----ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSR 149
A Q +AHP++ A IP V DQIRLW+ + R++ TP + +F S
Sbjct: 436 ANQIIDYLVAHAHPQMRRAAAARGTTVIPPTVMDQIRLWQLESQRMQKTPGFQFKDFESV 495
Query: 150 DVFEAACDYA 159
+ + +YA
Sbjct: 496 EEYRQLAEYA 505
>gi|334323685|ref|XP_003340422.1| PREDICTED: valyl-tRNA synthetase, mitochondrial-like [Monodelphis
domestica]
Length = 1641
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 37/158 (23%)
Query: 41 SNSQGFVVVETNFRMYAYS-------------------------------TSKLHYEILR 69
++ GF+VVETN+R+YAY+ S+L ++
Sbjct: 302 AHQPGFIVVETNYRLYAYTGEVGGMRMGIGMLEGRNCGFFGIILFFSLATESELQIALIA 361
Query: 70 LFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ------QNAHPRVADRIPSIPENVCD 123
LFS++ Y+ PN++V T+ES+ A NGITA+Q AHP + +IP +P + D
Sbjct: 362 LFSEMLYRFPNMVVAQITRESVQQAIANGITAQQIIHFLKTRAHPVMLKQIPVLPPTITD 421
Query: 124 QIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 161
QIRLWE + +R+ + Y++F S+ FE +AR+
Sbjct: 422 QIRLWELERDRLRFSEGVLYNQFLSQVDFELLLSHARE 459
>gi|345569654|gb|EGX52519.1| hypothetical protein AOL_s00043g13 [Arthrobotrys oligospora ATCC
24927]
Length = 452
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 12/127 (9%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ GF+++ETN+ S L +L LF+++ + PNL+ T+ES+ A GIT
Sbjct: 298 NDENGFLIIETNYH------SPLQIAVLNLFARLISRFPNLVTARITRESIRQAIGKGIT 351
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
AEQ NAHP++ P +P V DQIRLW+ + R+++T + + EF + F A
Sbjct: 352 AEQIIDYMTANAHPQLRKNSPVLPPTVVDQIRLWQIEGERMKVTSGYLFKEFATNAEFNA 411
Query: 155 ACDYARD 161
C YA D
Sbjct: 412 VCKYADD 418
>gi|389749775|gb|EIM90946.1| transcription factor Tfb2 [Stereum hirsutum FP-91666 SS1]
Length = 494
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 74/129 (57%), Gaps = 13/129 (10%)
Query: 46 FVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ-- 103
F+++ETN+R+YAY+ + L +L LF ++ + PNL+VG+ T++S+ A NGITA+Q
Sbjct: 318 FIILETNYRLYAYTDNPLQTAVLNLFVTMKSRFPNLVVGSITRDSVRKALSNGITADQII 377
Query: 104 ----QNAHPRVADRI-------PSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF 152
AHP++ + P +P V DQIRLWE + NR++ Y F S+ +
Sbjct: 378 SYLTTYAHPQMRKNVSRCRSFTPLLPVTVQDQIRLWELERNRLKSQEGFLYTAFASQADY 437
Query: 153 EAACDYARD 161
E YA+
Sbjct: 438 EYVLTYAKQ 446
>gi|396080769|gb|AFN82390.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon
romaleae SJ-2008]
Length = 414
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 73/125 (58%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
N + F++VETN ++YAY+ S+ ++ LF + LPNLI G+ T+ES+N AF+ GIT
Sbjct: 263 NRREFIIVETNNKIYAYTNSEYEKSVIHLFCNVSVSLPNLIKGSITEESVNVAFDKGITG 322
Query: 102 EQQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 161
+Q + + S+P + QI +WES NR+ M P + Y F + ++ ++ +
Sbjct: 323 KQIIHFLEASVKPGSLPPAITSQIMIWESKRNRIFMVPGYIYSNFLNLSDYQRVLEFCTE 382
Query: 162 RSGLL 166
RS L+
Sbjct: 383 RSYLI 387
>gi|401825125|ref|XP_003886658.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon hellem
ATCC 50504]
gi|395459803|gb|AFM97677.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon hellem
ATCC 50504]
Length = 414
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 73/125 (58%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
N + F++VETN ++YAY+ S+ ++ LF + LPNLI G+ T+ES+N AF+ GIT
Sbjct: 263 NRREFIIVETNNKIYAYTNSEYEKSVIHLFCSVSVNLPNLIKGSITEESVNVAFDKGITG 322
Query: 102 EQQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 161
+Q + + S+P + QI +WES NR+ M P + Y F + ++ ++ +
Sbjct: 323 KQIIHFLEASVKPGSLPPAISSQIMIWESKRNRIFMAPGYIYSNFLNLSDYQRVLEFCTE 382
Query: 162 RSGLL 166
RS L+
Sbjct: 383 RSYLI 387
>gi|303388087|ref|XP_003072278.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon
intestinalis ATCC 50506]
gi|303301417|gb|ADM10918.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon
intestinalis ATCC 50506]
Length = 414
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 73/125 (58%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
N + F++VETN ++YAY+ S+ ++ LF + + LPNL G+ T+ES+N AF+ GIT
Sbjct: 263 NRREFIIVETNNKIYAYTNSEYEKSVIHLFCNVSFNLPNLTKGSITEESVNAAFDKGITG 322
Query: 102 EQQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 161
Q + + S+P + +QI +WES NR+ M P + Y F + ++ ++ +
Sbjct: 323 RQIIHFLEASSKPGSLPPAIINQIIIWESKRNRIFMAPGYLYSNFLNLSDYQKVLEFCSE 382
Query: 162 RSGLL 166
R+ L+
Sbjct: 383 RNYLI 387
>gi|389642093|ref|XP_003718679.1| RNA polymerase II transcription factor B subunit 2 [Magnaporthe
oryzae 70-15]
gi|351641232|gb|EHA49095.1| RNA polymerase II transcription factor B subunit 2 [Magnaporthe
oryzae 70-15]
gi|440469172|gb|ELQ38293.1| RNA polymerase II transcription factor B subunit 2 [Magnaporthe
oryzae Y34]
gi|440481925|gb|ELQ62459.1| RNA polymerase II transcription factor B subunit 2 [Magnaporthe
oryzae P131]
Length = 490
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 83/138 (60%), Gaps = 14/138 (10%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
+N++G +++ETNFR+YAY+++ L IL LF+ ++ + ++ G ++ S+ A +GIT
Sbjct: 322 NNTKGAIILETNFRIYAYTSTPLQIAILALFANLKMRFAGMVTGQLSRHSIKRAISHGIT 381
Query: 101 AEQ------QNAHPRVADRI------PSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPS 148
A+Q +AH ++ RI P +P V DQIRLW+ + R+++ + + +F S
Sbjct: 382 ADQIIEYLASHAHEQM-HRIAAIRNKPVLPPTVVDQIRLWQLETERMQVQRGYLFKDFES 440
Query: 149 RDVFEAACDYARDRSGLL 166
+ F+A DYA D G+L
Sbjct: 441 QAEFKAIADYA-DEVGVL 457
>gi|452977455|gb|EME77221.1| hypothetical protein MYCFIDRAFT_146475 [Pseudocercospora fijiensis
CIRAD86]
Length = 476
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 73/130 (56%), Gaps = 11/130 (8%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
+N +GF+++ETN+R+YAY+ S L IL LF+ + + PNL+ TK S+ A +GIT
Sbjct: 300 ANEKGFIILETNYRLYAYTNSPLLISILSLFASLHTRYPNLVTAKITKTSVQAAISSGIT 359
Query: 101 AE------QQNAHP---RVAD--RIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSR 149
+ Q +AHP R A P +P V DQIRLW+ + R+ T + E S+
Sbjct: 360 SNQIISYLQTHAHPILRRTASMHNAPILPPTVVDQIRLWQIEGERMTSTKGYLIREVGSK 419
Query: 150 DVFEAACDYA 159
+ +E A YA
Sbjct: 420 EDYEKAVQYA 429
>gi|146414792|ref|XP_001483366.1| hypothetical protein PGUG_04095 [Meyerozyma guilliermondii ATCC
6260]
Length = 498
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 37/156 (23%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
QG +++ETNF++YAY+ S L IL LF + + N++ G T+ES+ NA NGIT++
Sbjct: 309 GQGSIILETNFKLYAYTNSPLEIAILNLFVNLRTRFSNMVSGQITRESIRNALYNGITSD 368
Query: 103 Q------QNAHPRV-------------------------------ADRIPSIPENVCDQI 125
Q +AHP++ ++ +P V DQI
Sbjct: 369 QIINFLETHAHPQMRALAKERLDKKVEFDASNNINTAGGGQNSSAQHKLEILPPTVVDQI 428
Query: 126 RLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 161
+LW+ +L+R++ + + EF S+ F+ C+YA D
Sbjct: 429 KLWQLELDRIQAFEGYLFKEFASQQEFDVLCNYASD 464
>gi|190347675|gb|EDK39997.2| hypothetical protein PGUG_04095 [Meyerozyma guilliermondii ATCC
6260]
Length = 498
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 37/156 (23%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
QG +++ETNF++YAY+ S L IL LF + + N++ G T+ES+ NA NGIT++
Sbjct: 309 GQGSIILETNFKLYAYTNSPLEIAILNLFVNLRTRFSNMVSGQITRESIRNALYNGITSD 368
Query: 103 Q------QNAHPRV-------------------------------ADRIPSIPENVCDQI 125
Q +AHP++ ++ +P V DQI
Sbjct: 369 QIINFLETHAHPQMRALAKERLDKKVEFDASNNINTAGGGQNSSAQHKLEILPPTVVDQI 428
Query: 126 RLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 161
+LW+ +L+R++ + + EF S+ F+ C+YA D
Sbjct: 429 KLWQLELDRIQAFEGYLFKEFASQQEFDVLCNYASD 464
>gi|402866404|ref|XP_003897374.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial,
partial [Papio anubis]
Length = 1647
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 39/156 (25%)
Query: 45 GFVVVETNFRMYAY---------------------------------STSKLHYEILRLF 71
GF+VVETN+R+YAY S S+L ++ LF
Sbjct: 351 GFIVVETNYRLYAYTGEVGQSAPEEKKEGLEGVWVWGWPPHPLSIPGSESELQIALIALF 410
Query: 72 SKIEYQLPNLIVGATTKESLNNAFENGITAEQ------QNAHPRVADRIPSIPENVCDQI 125
S++ Y+ PN++V T+ES+ A +GITA+Q AHP + + P +P + DQI
Sbjct: 411 SEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQI 470
Query: 126 RLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 161
RLWE + +R+ T Y++F S+ FE +AR+
Sbjct: 471 RLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARE 506
>gi|393910939|gb|EJD76097.1| transcription factor Tfb2 family protein, variant [Loa loa]
Length = 389
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 71/138 (51%), Gaps = 13/138 (9%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
N GFV+VETN+R+YAY+ S L IL F+++ Y+ ++ VG ++E++ AF+ GITA
Sbjct: 220 NQNGFVIVETNYRVYAYTDSNLQLAILSTFTEMLYRFNDMSVGVLSREAVRRAFQVGITA 279
Query: 102 EQ------QNAHPRV-------ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPS 148
Q NAHP I S+P V DQIRLWE + R+ A Y F S
Sbjct: 280 AQIIAFLRANAHPTTYAVTTEYGGMIQSVPITVADQIRLWEDERRRLMFCNAAVYSSFES 339
Query: 149 RDVFEAACDYARDRSGLL 166
+ Y + LL
Sbjct: 340 EKEYFGLKGYVSSQGILL 357
>gi|393910938|gb|EFO26137.2| transcription factor Tfb2 family protein [Loa loa]
Length = 486
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 71/138 (51%), Gaps = 13/138 (9%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
N GFV+VETN+R+YAY+ S L IL F+++ Y+ ++ VG ++E++ AF+ GITA
Sbjct: 317 NQNGFVIVETNYRVYAYTDSNLQLAILSTFTEMLYRFNDMSVGVLSREAVRRAFQVGITA 376
Query: 102 EQ------QNAHPRV-------ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPS 148
Q NAHP I S+P V DQIRLWE + R+ A Y F S
Sbjct: 377 AQIIAFLRANAHPTTYAVTTEYGGMIQSVPITVADQIRLWEDERRRLMFCNAAVYSSFES 436
Query: 149 RDVFEAACDYARDRSGLL 166
+ Y + LL
Sbjct: 437 EKEYFGLKGYVSSQGILL 454
>gi|312069992|ref|XP_003137940.1| transcription factor Tfb2 family protein [Loa loa]
Length = 470
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 71/138 (51%), Gaps = 13/138 (9%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
N GFV+VETN+R+YAY+ S L IL F+++ Y+ ++ VG ++E++ AF+ GITA
Sbjct: 301 NQNGFVIVETNYRVYAYTDSNLQLAILSTFTEMLYRFNDMSVGVLSREAVRRAFQVGITA 360
Query: 102 EQ------QNAHPRV-------ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPS 148
Q NAHP I S+P V DQIRLWE + R+ A Y F S
Sbjct: 361 AQIIAFLRANAHPTTYAVTTEYGGMIQSVPITVADQIRLWEDERRRLMFCNAAVYSSFES 420
Query: 149 RDVFEAACDYARDRSGLL 166
+ Y + LL
Sbjct: 421 EKEYFGLKGYVSSQGILL 438
>gi|449296697|gb|EMC92716.1| hypothetical protein BAUCODRAFT_259506 [Baudoinia compniacensis
UAMH 10762]
Length = 489
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 78/132 (59%), Gaps = 7/132 (5%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
+N +G++++ETN+R+YAY++S L IL LF+ ++ + PNLI TK S+ +A +GIT
Sbjct: 321 ANEKGYIILETNYRLYAYTSSPLPITILSLFATLKTRYPNLITAKLTKSSIQSAIASGIT 380
Query: 101 AEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
++Q +AHP + + P +P V DQIRLW+ + R+ + + + ++
Sbjct: 381 SDQIITYLTTHAHPILRRQNPVLPPTVVDQIRLWQIEGERMTAWKGFLIRDVGTAEEYDK 440
Query: 155 ACDYARDRSGLL 166
A YA D G+L
Sbjct: 441 AVQYA-DALGVL 451
>gi|313224499|emb|CBY20289.1| unnamed protein product [Oikopleura dioica]
Length = 411
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 75/127 (59%), Gaps = 6/127 (4%)
Query: 46 FVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ-- 103
F++VETN+R+YAY+ S+LHY ++ LF++++Y+ P +IV +++S+ + + GI+AEQ
Sbjct: 254 FILVETNYRIYAYTDSELHYALISLFAEVQYRFPYMIVAQMSRDSIQQSADYGISAEQIL 313
Query: 104 ----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYA 159
+AHP +P+ V D I LW + R++ Y +F ++ FE YA
Sbjct: 314 NYLRSSAHPIARKNKHWVPQVVEDNIHLWCKERERLKFNDGLLYHQFLDQEAFEMLKSYA 373
Query: 160 RDRSGLL 166
+D L+
Sbjct: 374 QDIRALV 380
>gi|395533817|ref|XP_003768949.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Sarcophilus harrisii]
Length = 1638
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 40/161 (24%)
Query: 41 SNSQGFVVVETNFRMYAYST----------------------------------SKLHYE 66
++ GF+VVETN+R+YAY+ S+L
Sbjct: 335 AHQPGFIVVETNYRLYAYTGEVGGIKMRIEIRGGGIGGELNLLWSSIVFSLETESELQIA 394
Query: 67 ILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ------QNAHPRVADRIPSIPEN 120
++ LFS++ Y+ PN++V T+ES+ A NGITA+Q AHP + + P +P
Sbjct: 395 LIALFSEMLYRFPNMVVAQVTRESVQQAIANGITAQQIIHFMKTRAHPVMLKQTPVLPPT 454
Query: 121 VCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 161
+ DQIRLWE + +R+ + Y++F S+ FE +AR+
Sbjct: 455 ITDQIRLWELERDRLRFSEGVLYNQFLSQVDFELLLSHARE 495
>gi|313245784|emb|CBY34779.1| unnamed protein product [Oikopleura dioica]
Length = 456
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 75/127 (59%), Gaps = 6/127 (4%)
Query: 46 FVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ-- 103
F++VETN+R+YAY+ S+LHY ++ LF++++Y+ P +IV +++S+ + + GI+AEQ
Sbjct: 299 FILVETNYRIYAYTDSELHYALISLFAEVQYRFPYMIVAQMSRDSIQQSADYGISAEQIL 358
Query: 104 ----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYA 159
+AHP +P+ V D I LW + R++ Y +F ++ FE YA
Sbjct: 359 NYLRSSAHPIARKNKHWVPQVVEDNIHLWCKERERLKFNDGLLYHQFLDQEAFEMLKSYA 418
Query: 160 RDRSGLL 166
+D L+
Sbjct: 419 QDIRALV 425
>gi|344303892|gb|EGW34141.1| RNA polymerase II transcription factor B subunit 2 [Spathaspora
passalidarum NRRL Y-27907]
Length = 519
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 45/171 (26%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
N QG V++ETNF++YAY+ S L IL LF + + N++ G T+ES+ NA NGIT
Sbjct: 317 GNIQGTVIIETNFKLYAYTNSPLEIAILNLFVHLRTRFANMVCGQITRESIRNALYNGIT 376
Query: 101 AEQ------QNAHPRV---------------------------------AD------RIP 115
A+Q +AHP++ AD ++
Sbjct: 377 ADQIIRFLETHAHPQMKVLAKEKLDKKIEFDTSHNINTAGGAPQSQALRADGSVAQHKLE 436
Query: 116 SIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
+P NV DQI+LW+ +L+R++ + + +FP++ F+ YA + L+
Sbjct: 437 ILPPNVVDQIKLWQLELDRIQTFDGYLFKDFPNQQEFDKLSSYASELGVLI 487
>gi|50291141|ref|XP_448003.1| hypothetical protein [Candida glabrata CBS 138]
gi|62901305|sp|Q6FP41.1|TFB2_CANGA RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|49527314|emb|CAG60954.1| unnamed protein product [Candida glabrata]
Length = 504
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 24/146 (16%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G +++ETNF++Y+Y S L IL LF ++ + N++ G T+ES+ A NGITA+Q
Sbjct: 327 GALIIETNFKLYSYCNSPLQIAILSLFVHLKSRFANMVAGQITRESIRRALINGITADQV 386
Query: 104 -----QNAHPRV------------------ADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHP++ D + +P V DQI+LW+ +L+RV
Sbjct: 387 IAYLESHAHPQMRRLAEEKLQKKLELDPNCKDPLQVLPPTVVDQIKLWQLELDRVLTYEG 446
Query: 141 HYYDEFPSRDVFEAACDYARDRSGLL 166
Y +F + F C YA+D LL
Sbjct: 447 SLYIDFDTAQDFNMLCKYAQDIGALL 472
>gi|365986883|ref|XP_003670273.1| hypothetical protein NDAI_0E02130 [Naumovozyma dairenensis CBS 421]
gi|343769043|emb|CCD25030.1| hypothetical protein NDAI_0E02130 [Naumovozyma dairenensis CBS 421]
Length = 522
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 24/146 (16%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G ++VETNF++Y+YS S L IL LF ++++ N++ G T+ES+ A NGITAEQ
Sbjct: 344 GSLIVETNFKLYSYSNSPLQIAILSLFVHLKFRFVNMVTGQITRESIRRALINGITAEQI 403
Query: 104 -----QNAHPRV------------------ADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHP++ D + +P V DQIRLW+ +L+RV
Sbjct: 404 IAYLETHAHPQMRRLAEEKLEKKLELDANCKDSLQILPPTVVDQIRLWQLELDRVIAYEG 463
Query: 141 HYYDEFPSRDVFEAACDYARDRSGLL 166
Y +F + + YA+D LL
Sbjct: 464 SLYSDFENNTEYTTLYKYAQDIGVLL 489
>gi|156839389|ref|XP_001643386.1| hypothetical protein Kpol_479p16 [Vanderwaltozyma polyspora DSM
70294]
gi|156113994|gb|EDO15528.1| hypothetical protein Kpol_479p16 [Vanderwaltozyma polyspora DSM
70294]
Length = 504
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 75/141 (53%), Gaps = 24/141 (17%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G +VVETNF++Y+YS S L IL LF ++ + N++ G T+ES+ NA NGITAEQ
Sbjct: 329 GALVVETNFKLYSYSNSPLQIAILSLFVHLKTRFSNMVTGQITRESIRNALSNGITAEQI 388
Query: 104 -----QNAHPRV------------------ADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHP++ + + +P V DQI+LW+ +L+R+
Sbjct: 389 IAYLETHAHPQMRRLAEERLKKKLELDQNSKETLQILPPTVVDQIKLWQLELDRIISYEG 448
Query: 141 HYYDEFPSRDVFEAACDYARD 161
Y +F ++ ++ YA+D
Sbjct: 449 SLYSDFDNKQEYDMLYSYAQD 469
>gi|170589001|ref|XP_001899262.1| Transcription factor Tfb2 family protein [Brugia malayi]
gi|158593475|gb|EDP32070.1| Transcription factor Tfb2 family protein [Brugia malayi]
Length = 465
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
N GFV+VETN+R+YAY+ S L IL F+++ Y+ ++ VG ++E++ AF+ GITA
Sbjct: 296 NQNGFVIVETNYRVYAYTDSNLQLAILSTFTEMLYRFSDMSVGVLSREAVRRAFQVGITA 355
Query: 102 EQ------QNAHP-------RVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPS 148
Q +NAHP I S+P V DQI+LWE + R+ A Y F S
Sbjct: 356 AQIIAFLSRNAHPITCAVTTEYGRMIQSVPITVVDQIQLWEDERRRLTFCSAAVYSSFES 415
>gi|403308524|ref|XP_003944708.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Saimiri boliviensis boliviensis]
Length = 1752
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 44/161 (27%)
Query: 45 GFVVVETNFRMYAY--------------------------------------STSKLHYE 66
GF+VVETN+R+YAY S S+L
Sbjct: 450 GFIVVETNYRLYAYTGEVGQRAPGRAGWGRGNARLEGVWVWGWPPHPLSIPGSESELQIA 509
Query: 67 ILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ------QNAHPRVADRIPSIPEN 120
++ LFS++ Y+ PN++V T+ES+ A +GITA+Q AHP + + P +P
Sbjct: 510 LIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPT 569
Query: 121 VCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 161
+ DQIRLWE + +R+ T Y++F S+ FE +AR+
Sbjct: 570 ITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARE 610
>gi|62088538|dbj|BAD92716.1| VARS2L protein variant [Homo sapiens]
Length = 1653
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 44/161 (27%)
Query: 45 GFVVVETNFRMYAY--------------------------------------STSKLHYE 66
GF+VVETN+R+YAY S S+L
Sbjct: 352 GFIVVETNYRLYAYTGEAGQRAPGRGGWGHLKEGLEGVWVWGWPPLPLSIPGSESELQIA 411
Query: 67 ILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ------QNAHPRVADRIPSIPEN 120
++ LFS++ Y+ PN++V T+ES+ A +GITA+Q AHP + + P +P
Sbjct: 412 LIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPT 471
Query: 121 VCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 161
+ DQIRLWE + +R+ T Y++F S+ FE +AR+
Sbjct: 472 ITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARE 512
>gi|85691005|ref|XP_965902.1| hypothetical protein ECU01_0670 [Encephalitozoon cuniculi GB-M1]
gi|19068469|emb|CAD24937.1| hypothetical protein [Encephalitozoon cuniculi GB-M1]
gi|449329766|gb|AGE96035.1| hypothetical protein ECU01_0670 [Encephalitozoon cuniculi]
Length = 414
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 68/118 (57%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
N + F++VETN ++YAY+ S+ ++ LF + LPNLI G T+ES+N AF+ GIT
Sbjct: 263 NRREFIIVETNNKIYAYTNSEYEKSVIHLFCNVTVNLPNLIKGIITEESVNVAFDKGITG 322
Query: 102 EQQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYA 159
+Q + R S+P + +QI +WES NR+ M P + Y F + ++ ++
Sbjct: 323 KQIIHFLEASVRQGSLPPAIRNQIVIWESKRNRIFMVPGYLYSNFLNLSDYQKVLEFC 380
>gi|390461382|ref|XP_002746360.2| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Callithrix jacchus]
Length = 1675
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 45/162 (27%)
Query: 45 GFVVVETNFRMYAY---------------------------------------STSKLHY 65
GF+VVETN+R+YAY S S+L
Sbjct: 372 GFIVVETNYRLYAYTGEAGQRAPGRAGWGXHLKERFEGVWVWGWPPHPLSIPGSESELQI 431
Query: 66 EILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ------QNAHPRVADRIPSIPE 119
++ LFS++ Y+ PN++V T+ES+ A +GITA+Q AHP + + P +P
Sbjct: 432 ALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPP 491
Query: 120 NVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 161
+ DQIRLWE + +R+ T Y++F S+ FE +AR+
Sbjct: 492 TITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARE 533
>gi|320587960|gb|EFX00435.1| tfiih and nucleotide excision repair factor 3 complexes subunit
[Grosmannia clavigera kw1407]
Length = 518
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 48/134 (35%), Positives = 75/134 (55%), Gaps = 12/134 (8%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+G V++ETNFR+YAY+ S L +L LFSK+ + P ++ G T++S+ A GIT++Q
Sbjct: 355 RGSVILETNFRLYAYTASPLQIAVLALFSKLSQRFPGMVAGKLTRDSVRRAISYGITSDQ 414
Query: 104 ------QNAHPRV-----ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF 152
NAH ++ A+ P +P V DQIRLWE + R++ + +F S +
Sbjct: 415 IISYLAANAHEQMHKYAAANHRPVLPPTVVDQIRLWELENERMKSHKGFLFKDFDSAKEY 474
Query: 153 EAACDYARDRSGLL 166
+ YA D G+L
Sbjct: 475 DMLAQYA-DEIGVL 487
>gi|366997767|ref|XP_003683620.1| hypothetical protein TPHA_0A01010 [Tetrapisispora phaffii CBS 4417]
gi|357521915|emb|CCE61186.1| hypothetical protein TPHA_0A01010 [Tetrapisispora phaffii CBS 4417]
Length = 504
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 24/146 (16%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE-- 102
G +VVETNF++Y+YS S L IL LF + + N++ G T+ES+ NA NG+TA+
Sbjct: 328 GALVVETNFKLYSYSNSPLQIAILSLFVHLRTRFSNMVTGQITRESIRNALANGVTADQI 387
Query: 103 ----QQNAHPRV------------------ADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
Q +AHP++ D++ +P V DQI+LW+ +L+R+
Sbjct: 388 IAYLQSHAHPQMRRLAETTLKKKLELDPNTKDQLQILPPTVVDQIKLWQLELDRILSYDG 447
Query: 141 HYYDEFPSRDVFEAACDYARDRSGLL 166
Y +F + + +YA+D LL
Sbjct: 448 SLYSDFDNNQEYNMLYNYAKDIGVLL 473
>gi|453082965|gb|EMF11011.1| RNA polymerase II transcription factor B subunit 2 [Mycosphaerella
populorum SO2202]
Length = 507
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 74/130 (56%), Gaps = 11/130 (8%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ +G++++ETN+R+YAY++S L IL LF+ + + PNLI TK S++ A +GIT
Sbjct: 319 ASEKGYIILETNYRLYAYTSSPLPISILSLFASLNTRYPNLITAKITKTSIHTAIASGIT 378
Query: 101 AE------QQNAHP-----RVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSR 149
++ Q +AHP + P +P V DQIRLW+ + R++ T + + +
Sbjct: 379 SDQIISYLQTHAHPILRRQAALNSAPILPPTVVDQIRLWQIEGERMKSTKGYLIRDVGTE 438
Query: 150 DVFEAACDYA 159
D + A YA
Sbjct: 439 DDYTKAVQYA 448
>gi|402592023|gb|EJW85952.1| transcription factor Tfb2 family protein [Wuchereria bancrofti]
Length = 470
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 13/138 (9%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
N GFV+VETN+R+YAY+ S L IL F+++ Y+ ++ VG ++E++ AF+ GITA
Sbjct: 301 NQHGFVIVETNYRVYAYTDSNLQLAILSTFTEMLYRFNDMSVGVLSREAVRRAFQVGITA 360
Query: 102 EQ------QNAHP-------RVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPS 148
Q NAHP I S+P V DQI+LWE + R+ A Y F S
Sbjct: 361 AQIIAFLSTNAHPITYAVTTEYGRMIQSVPITVADQIQLWEDERRRLTFCNATVYSSFES 420
Query: 149 RDVFEAACDYARDRSGLL 166
+ Y ++ LL
Sbjct: 421 EKEYFGLKGYVISQNILL 438
>gi|45187599|ref|NP_983822.1| ADL274Wp [Ashbya gossypii ATCC 10895]
gi|62901343|sp|Q75B51.1|TFB2_ASHGO RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|44982337|gb|AAS51646.1| ADL274Wp [Ashbya gossypii ATCC 10895]
gi|374107034|gb|AEY95942.1| FADL274Wp [Ashbya gossypii FDAG1]
Length = 514
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 24/146 (16%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G ++VETNF++Y+YS S L IL LF ++ + N++ G T+ES+ A NGITA+Q
Sbjct: 339 GALIVETNFKLYSYSNSPLQIAILSLFIHLKTRFQNMVTGQITRESIRRALHNGITADQI 398
Query: 104 -----QNAHPRV------------------ADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHP++ D + +P V DQI+LW+ +L+R+
Sbjct: 399 IAYMETHAHPQMRRLAGDNLEKKLELDPNCRDTLQVLPPTVVDQIKLWQLELDRIISYDG 458
Query: 141 HYYDEFPSRDVFEAACDYARDRSGLL 166
+ + +F + ++ YARD LL
Sbjct: 459 YLFRDFDNLQEYQVLAQYARDIGVLL 484
>gi|193633122|ref|XP_001945987.1| PREDICTED: general transcription factor IIH subunit 4-like
[Acyrthosiphon pisum]
Length = 471
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 38 EYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFEN 97
E + N + ++VVETNFR+YA + S L ++ LF+ + Y+ PN+ G T++S+ A +
Sbjct: 307 ERMKNKERYIVVETNFRIYAMTDSDLKVALVALFTHMLYRFPNMSAGILTRDSVRTALRS 366
Query: 98 GITAEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDV 151
GITA Q + HP++ + +P+ V DQI LWE++ NR+ T Y + +
Sbjct: 367 GITAAQIVRFLTVHTHPQMQE--CGMPQTVIDQIYLWENERNRLTYTDGVLYSNINTPND 424
Query: 152 FEAACDYARDRSGLL 166
+E +YA D L+
Sbjct: 425 YETIKNYAADIGALV 439
>gi|301786953|ref|XP_002928911.1| PREDICTED: LOW QUALITY PROTEIN: valyl-tRNA synthetase,
mitochondrial-like [Ailuropoda melanoleuca]
Length = 1637
Score = 85.5 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 48/169 (28%)
Query: 41 SNSQGFVVVETNFRMYAYS----------------------------------------- 59
++ GF+VVETN+R+YAY+
Sbjct: 325 AHQPGFIVVETNYRLYAYTGEARQRAPNSRXGVGTFLVTLEGLEGVWVWGXPSSSLPIPG 384
Query: 60 -TSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ------QNAHPRVAD 112
S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q AHP +
Sbjct: 385 PESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLK 444
Query: 113 RIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 161
+ P +P + DQIRLWE + +R+ T Y++F S+ FE +AR+
Sbjct: 445 QTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARE 493
>gi|401623322|gb|EJS41426.1| tfb2p [Saccharomyces arboricola H-6]
Length = 513
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 24/146 (16%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G ++VETNF++Y+YS S L +L LF ++ + N+++G T+ES+ A NGITAEQ
Sbjct: 337 GSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITAEQI 396
Query: 104 -----QNAHPRV------------------ADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHP++ + + +P V DQIRLW+ +L+RV
Sbjct: 397 IAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVMTYEG 456
Query: 141 HYYDEFPSRDVFEAACDYARDRSGLL 166
Y +F + + YA+D LL
Sbjct: 457 SLYSDFETSQEYNVLNKYAQDIGVLL 482
>gi|320581720|gb|EFW95939.1| TFIIH basal transcription factor complex subunit 2 [Ogataea
parapolymorpha DL-1]
Length = 544
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 31/152 (20%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
SN+QG +VVETNF++Y Y++S L IL LF ++ + N++ G T+ES+ A NGIT
Sbjct: 357 SNNQGTIVVETNFKIYCYTSSPLQIAILNLFVHLKARFANMVTGVITRESVRRALINGIT 416
Query: 101 AEQ------QNAHP----RVADRIPS---------------------IPENVCDQIRLWE 129
A+Q +AHP + D++ +P V DQI+LW+
Sbjct: 417 ADQMINYLGSHAHPWMVKQAEDKLARKLELESSIGNAAGQRQIDLEILPPTVVDQIKLWQ 476
Query: 130 SDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 161
+L+R++ + Y +F + FE Y +
Sbjct: 477 LELDRIQSFKGYLYKDFSTDLEFEKLLTYGEE 508
>gi|429965574|gb|ELA47571.1| hypothetical protein VCUG_00894 [Vavraia culicis 'floridensis']
Length = 424
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 75/134 (55%), Gaps = 1/134 (0%)
Query: 33 WYIVREYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLN 92
++++ S F+VVETN+++YAY+TS I++LF +I +LPNL+V T+ES+N
Sbjct: 264 YFLLFSSASTQDSFLVVETNYKLYAYTTSSHELSIIKLFCQIIRELPNLVVAHITEESVN 323
Query: 93 NAFENGITAEQQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF 152
AF GIT +Q + R +P V +QI +WE +R++ A Y F + +
Sbjct: 324 AAFVKGITGQQIVDYLNEKSR-SELPVVVLEQILIWERKRDRMKCMDAVIYSHFMTYGEY 382
Query: 153 EAACDYARDRSGLL 166
E Y +++ L+
Sbjct: 383 EITYKYCKEKGALV 396
>gi|193654859|ref|XP_001944632.1| PREDICTED: general transcription factor IIH subunit 4-like
[Acyrthosiphon pisum]
Length = 470
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 74/133 (55%), Gaps = 8/133 (6%)
Query: 40 ISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGI 99
+ + ++VVETNFR+YA + S L ++ LF+ + Y+ PN+ G T++S+ A NGI
Sbjct: 308 MKKKERYIVVETNFRIYAMTDSDLKVALVALFTHMLYRFPNMSAGILTRDSVQTALRNGI 367
Query: 100 TAEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 153
TA Q + HP++ + +P+ V DQI LWE + NR+ Y + + + +E
Sbjct: 368 TAAQIVRFLTVHTHPQMQE--CGMPQTVIDQIYLWEYERNRLTYRDGVLYSDINTPNDYE 425
Query: 154 AACDYARDRSGLL 166
A +YA D LL
Sbjct: 426 AIKNYAADIGALL 438
>gi|397471696|ref|XP_003807420.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Pan paniscus]
Length = 1673
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 51/168 (30%)
Query: 45 GFVVVETNFRMYAY---------------------------------------------S 59
GF+VVETN+R+YAY S
Sbjct: 365 GFIVVETNYRLYAYTGEAGQRAPGRGGWGALXHFSXHLKEGLEGVWVWGCPPHPLSIPGS 424
Query: 60 TSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ------QNAHPRVADR 113
S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q AHP + +
Sbjct: 425 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 484
Query: 114 IPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 161
P +P + DQIRLWE + +R+ T Y++F S+ FE +AR+
Sbjct: 485 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARE 532
>gi|410082501|ref|XP_003958829.1| hypothetical protein KAFR_0H02850 [Kazachstania africana CBS 2517]
gi|372465418|emb|CCF59694.1| hypothetical protein KAFR_0H02850 [Kazachstania africana CBS 2517]
Length = 514
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 24/141 (17%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G +++ETNF++Y+YS S L IL LF ++ + N++ G T+ES+ A NGITA+Q
Sbjct: 338 GSLIIETNFKLYSYSNSPLQIAILSLFVHLKSRFVNMVTGQITRESIRRALVNGITADQI 397
Query: 104 -----QNAHPRV------------------ADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHPR+ D + +P V DQI+LW+ +L+RV
Sbjct: 398 IAYLETHAHPRMRRLAEEKLEKKLELDPNSKDTLQILPPTVVDQIKLWQLELDRVITYDG 457
Query: 141 HYYDEFPSRDVFEAACDYARD 161
Y +F + + YA+D
Sbjct: 458 SLYSDFENSTEYNMLSKYAQD 478
>gi|403217068|emb|CCK71563.1| hypothetical protein KNAG_0H01490 [Kazachstania naganishii CBS
8797]
Length = 519
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 24/146 (16%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G ++VETNF++Y+YS S L IL LF ++ + N++ G TK S+ NA +NGITAEQ
Sbjct: 343 GVLIVETNFKVYSYSNSPLQIAILSLFVHLKSRFINMVTGQITKRSIINALDNGITAEQI 402
Query: 104 -----QNAHPRV------------------ADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHP++ D + +P V DQI+LW+ + +RV
Sbjct: 403 IAYLETHAHPQMRRLAEAQLEKKRELDQNCKDPLQILPPTVVDQIKLWQLEKDRVMAFEG 462
Query: 141 HYYDEFPSRDVFEAACDYARDRSGLL 166
Y +F S + YA+D +L
Sbjct: 463 SLYSDFESNAEYNILKKYAQDIGVML 488
>gi|46127843|ref|XP_388475.1| hypothetical protein FG08299.1 [Gibberella zeae PH-1]
gi|408390907|gb|EKJ70292.1| hypothetical protein FPSE_09509 [Fusarium pseudograminearum CS3096]
Length = 494
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 75/133 (56%), Gaps = 12/133 (9%)
Query: 41 SNSQ-GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGI 99
SN Q G V++ETN+R+YAY+ S L +L LF+K++ + P+++ G +++S+ A GI
Sbjct: 329 SNEQRGSVIIETNYRIYAYTQSTLQIAVLALFTKLQMRFPDMVAGRISRQSIRQAINFGI 388
Query: 100 TAEQ------QNAHPRV-----ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPS 148
TAEQ +AH ++ + P +P V DQIRLW+ + R++ T + +F
Sbjct: 389 TAEQIISYLSAHAHDQMRRTASLNNKPVLPPTVVDQIRLWQLENERMKTTGGFLFKDFED 448
Query: 149 RDVFEAACDYARD 161
+ A +A +
Sbjct: 449 HKEYMAVAGFAEE 461
>gi|300707677|ref|XP_002996037.1| hypothetical protein NCER_100934 [Nosema ceranae BRL01]
gi|239605297|gb|EEQ82366.1| hypothetical protein NCER_100934 [Nosema ceranae BRL01]
Length = 403
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 63/101 (62%)
Query: 46 FVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQQN 105
F+++ETNF++YAY++S I++LFS I ++PNLI + T+ESL+NAF G+T++Q
Sbjct: 254 FILLETNFKLYAYTSSVYEMSIIQLFSNIYLKMPNLIKASITEESLSNAFSKGVTSQQII 313
Query: 106 AHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEF 146
+ IP + QI +WE+ R+++ P + Y F
Sbjct: 314 NFLKSYSLFEDIPVAIISQIIIWETKRKRIKIFPGYLYSNF 354
>gi|349581695|dbj|GAA26852.1| K7_Tfb2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 513
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 24/146 (16%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G ++VETNF++Y+YS S L +L LF ++ + N+++G T+ES+ A NGITA+Q
Sbjct: 337 GSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQI 396
Query: 104 -----QNAHPRV------------------ADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHP++ + + +P V DQIRLW+ +L+RV
Sbjct: 397 IAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEG 456
Query: 141 HYYDEFPSRDVFEAACDYARDRSGLL 166
Y +F + + YA+D LL
Sbjct: 457 SLYSDFETSQEYNLLSKYAQDIGVLL 482
>gi|6325135|ref|NP_015203.1| Tfb2p [Saccharomyces cerevisiae S288c]
gi|62901134|sp|Q02939.1|TFB2_YEAST RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=General transcription and DNA repair
factor IIH subunit TFB2; Short=TFIIH subunit TFB2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|1163092|gb|AAB68240.1| Tfb2p: TFIIH subunit [Saccharomyces cerevisiae]
gi|1778059|gb|AAB40628.1| transcription/repair factor TFIIH subunit Tfb2, partial
[Saccharomyces cerevisiae]
gi|151942676|gb|EDN61022.1| transcription initiation factor TFIIH subunit [Saccharomyces
cerevisiae YJM789]
gi|190407835|gb|EDV11100.1| RNA polymerase II transcription factor B subunit 2 [Saccharomyces
cerevisiae RM11-1a]
gi|256274256|gb|EEU09164.1| Tfb2p [Saccharomyces cerevisiae JAY291]
gi|259150035|emb|CAY86838.1| Tfb2p [Saccharomyces cerevisiae EC1118]
gi|285815419|tpg|DAA11311.1| TPA: Tfb2p [Saccharomyces cerevisiae S288c]
gi|323331200|gb|EGA72618.1| Tfb2p [Saccharomyces cerevisiae AWRI796]
gi|323335024|gb|EGA76314.1| Tfb2p [Saccharomyces cerevisiae Vin13]
gi|323346175|gb|EGA80465.1| Tfb2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352000|gb|EGA84539.1| Tfb2p [Saccharomyces cerevisiae VL3]
gi|365762780|gb|EHN04313.1| Tfb2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392295887|gb|EIW06990.1| Tfb2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 513
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 24/146 (16%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G ++VETNF++Y+YS S L +L LF ++ + N+++G T+ES+ A NGITA+Q
Sbjct: 337 GSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQI 396
Query: 104 -----QNAHPRV------------------ADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHP++ + + +P V DQIRLW+ +L+RV
Sbjct: 397 IAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEG 456
Query: 141 HYYDEFPSRDVFEAACDYARDRSGLL 166
Y +F + + YA+D LL
Sbjct: 457 SLYSDFETSQEYNLLSKYAQDIGVLL 482
>gi|164425579|ref|XP_960485.2| hypothetical protein NCU05523 [Neurospora crassa OR74A]
gi|157070982|gb|EAA31249.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 475
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 11/126 (8%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
+++ETN+R+YAY+TS L +L LF ++ + PN++ G T++S+ A GITA+Q
Sbjct: 317 IIIETNYRIYAYTTSPLQIAVLALFCQLNMRFPNMVSGRLTRDSIRQAIGFGITADQIIS 376
Query: 104 ---QNAHPRVADRI-----PSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
+AH ++ P +P V DQIRLW+ + R++ T + +F S + + A
Sbjct: 377 YLHAHAHQQMVREATVTGKPVLPPTVVDQIRLWQLENERMQTTAGFLFKDFESTEEYAAL 436
Query: 156 CDYARD 161
YA +
Sbjct: 437 SRYAEE 442
>gi|324512881|gb|ADY45318.1| General transcription factor IIH subunit 4 [Ascaris suum]
Length = 481
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 13/135 (9%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G+++VETN+R+YAY+ S L IL F+++ Y+ ++ VG T++S+ A + GITA Q
Sbjct: 317 GYIIVETNYRVYAYTDSSLQLAILSTFTEMLYRFNDMSVGMLTRDSVRRALQVGITASQI 376
Query: 104 -----QNAHPRVA-------DRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDV 151
NAHP I +P V DQIRLWE + +R+ + Y F S
Sbjct: 377 ISFLRANAHPETVAAANASPGVIHCVPVTVADQIRLWEDERHRLVFFDSALYSTFESERE 436
Query: 152 FEAACDYARDRSGLL 166
+ +Y R + LL
Sbjct: 437 YVGVKEYTRSQDILL 451
>gi|448527133|ref|XP_003869438.1| TFIIH and nucleotide excision repair factor 3 complex subunit
[Candida orthopsilosis Co 90-125]
gi|380353791|emb|CCG23303.1| TFIIH and nucleotide excision repair factor 3 complex subunit
[Candida orthopsilosis]
Length = 500
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 42/168 (25%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
SNS+ +++ETNF++YAY+ S L IL LF +++ + N++ G T+ES+ NA NGIT
Sbjct: 304 SNSRESIIIETNFKIYAYTNSPLEIAILNLFVQMKTRFSNMVCGQITRESIRNALYNGIT 363
Query: 101 AEQ------QNAHPRV------------------------------------ADRIPSIP 118
++Q +AHP++ ++ IP
Sbjct: 364 SDQIIKFLETHAHPQMRALAKEKLDKKVEFDASHNINTAGGAPQSKTDGAISQHKLEVIP 423
Query: 119 ENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
NV DQI+LW+ +L+R++ + + +F ++ ++ +YA + L+
Sbjct: 424 PNVVDQIKLWQLELDRIQTVEGYLFKDFANQQEYDTLSNYATELGVLV 471
>gi|323302721|gb|EGA56527.1| Tfb2p [Saccharomyces cerevisiae FostersB]
Length = 505
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 24/146 (16%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G ++VETNF++Y+YS S L +L LF ++ + N+++G T+ES+ A NGITA+Q
Sbjct: 337 GSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQI 396
Query: 104 -----QNAHPRV------------------ADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHP++ + + +P V DQIRLW+ +L+RV
Sbjct: 397 IAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEG 456
Query: 141 HYYDEFPSRDVFEAACDYARDRSGLL 166
Y +F + + YA+D LL
Sbjct: 457 SLYSDFETSQEYNLLSKYAQDIGVLL 482
>gi|336466164|gb|EGO54329.1| hypothetical protein NEUTE1DRAFT_87562 [Neurospora tetrasperma FGSC
2508]
gi|350286986|gb|EGZ68233.1| transcription factor Tfb2 [Neurospora tetrasperma FGSC 2509]
Length = 475
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 11/126 (8%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
+++ETN+R+YAY+TS L +L LF ++ + PN++ G T++S+ A GITA+Q
Sbjct: 317 IIIETNYRIYAYTTSPLQIAVLALFCQLNMRFPNMVSGRLTRDSIRQAIGFGITADQIIS 376
Query: 104 ---QNAHPRVADRI-----PSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
+AH ++ P +P V DQIRLW+ + R++ T + +F S + + A
Sbjct: 377 YLHAHAHQQMVREATVTGKPVLPPTVVDQIRLWQLENERMQTTAGFLFKDFESTEEYAAL 436
Query: 156 CDYARD 161
YA +
Sbjct: 437 SRYAEE 442
>gi|452824378|gb|EME31381.1| transcription initiation factor TFIIH subunit H4 [Galdieria
sulphuraria]
Length = 740
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE---- 102
++V+TNFR+Y Y+ +L LF + Y+LPN+ VG T++S+ A NGITA+
Sbjct: 328 MIVQTNFRVYVYTNCTFQISLLSLFIQFLYRLPNMAVGVITRDSIRTALNNGITAQQMIS 387
Query: 103 --QQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYAR 160
Q + HP + ++P + DQIRLWE+ RV A D F + FE Y
Sbjct: 388 YLQNHMHPNMKGKLPI---TIIDQIRLWEAQRFRVTTKHALLLDHFDNMTCFEKT--YGT 442
Query: 161 DRSG 164
R G
Sbjct: 443 TRIG 446
>gi|323306981|gb|EGA60265.1| Tfb2p [Saccharomyces cerevisiae FostersO]
Length = 448
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 24/146 (16%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G ++VETNF++Y+YS S L +L LF ++ + N+++G T+ES+ A NGITA+Q
Sbjct: 288 GSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQI 347
Query: 104 -----QNAHPRV------------------ADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHP++ + + +P V DQIRLW+ +L+RV
Sbjct: 348 IAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEG 407
Query: 141 HYYDEFPSRDVFEAACDYARDRSGLL 166
Y +F + + YA+D LL
Sbjct: 408 SLYSDFETSQEYNLLSKYAQDIGVLL 433
>gi|440493551|gb|ELQ76006.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit TFB2 [Trachipleistophora
hominis]
Length = 426
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQQ 104
F++VETN+++YAY+TS I++LFS+I +LPNL+ T+ES+N AF GIT +Q
Sbjct: 278 SFLIVETNYKLYAYTTSSHELSIIKLFSQIVRELPNLVTAHITEESVNAAFLKGITGQQI 337
Query: 105 NAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSG 164
+ + +P V +QI +WE +R++ A Y F + + +E Y R++
Sbjct: 338 VDYLTEKSK-SELPPVVLEQILIWERQRDRMKCIDAVIYSHFMTYNEYEITYRYCREKGA 396
Query: 165 LL 166
L+
Sbjct: 397 LI 398
>gi|260945437|ref|XP_002617016.1| hypothetical protein CLUG_02460 [Clavispora lusitaniae ATCC 42720]
gi|238848870|gb|EEQ38334.1| hypothetical protein CLUG_02460 [Clavispora lusitaniae ATCC 42720]
Length = 511
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 43/176 (24%)
Query: 34 YIVREYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNN 93
++ E + G +++ETNF++YAY+ S L IL LF ++ + N+++G T+ES+
Sbjct: 308 HVTSEAGESQSGQIILETNFKLYAYTNSPLEIAILNLFVNLKVRFANMVIGQITRESIRK 367
Query: 94 AFENGITAEQ------QNAHPRV------------------------------------- 110
A NGITA+Q +AH ++
Sbjct: 368 ALYNGITADQIIKFLETHAHSQMRTSAKEKLDKKIEFDASHNINTAGGAPQSKSSDSGVA 427
Query: 111 ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
R+ +P NV DQI+LW+ +L+R++ + + +F +++ ++ C+YA + LL
Sbjct: 428 QHRLEILPPNVVDQIKLWQLELDRIQTFEGYLFKDFKNQNEYDVLCNYATEVGVLL 483
>gi|429962184|gb|ELA41728.1| hypothetical protein VICG_01232 [Vittaforma corneae ATCC 50505]
Length = 449
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
S F+V+ETNF++YAY+++ +L LFSK Y PNLI +ESL +AF GITA+
Sbjct: 300 SNKFIVLETNFKIYAYTSTAYDKSVLSLFSKTVYVFPNLIKACFDEESLLSAFNKGITAK 359
Query: 103 QQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDR 162
Q + + + +P+N+ +QI +WE +R+ + Y +F F Y +
Sbjct: 360 QIIKY--LQEHSEEVPKNIVNQISIWEHRQHRIRARNGYLYHDFIHLSDFHRVLRYVESK 417
Query: 163 SGLL 166
GL+
Sbjct: 418 GGLI 421
>gi|430812024|emb|CCJ30551.1| unnamed protein product [Pneumocystis jirovecii]
Length = 319
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 59/107 (55%), Gaps = 6/107 (5%)
Query: 61 SKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ------QNAHPRVADRI 114
S L +L LF + + NL+VG T+ S+ AF NGITAEQ AHP++
Sbjct: 178 SPLQIAVLNLFVHLYLRFSNLVVGVITRNSVRQAFMNGITAEQIISYLTSYAHPQMKKNT 237
Query: 115 PSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 161
P IP V DQIRLWE + NR++ T + + +F S FE A YA +
Sbjct: 238 PIIPPTVNDQIRLWEMERNRLKATEGYLFRDFNSNSDFELALKYANE 284
>gi|207340606|gb|EDZ68904.1| YPL122Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 226
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 24/146 (16%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G ++VETNF++Y+YS S L +L LF ++ + N+++G T+ES+ A NGITA+Q
Sbjct: 50 GSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQI 109
Query: 104 -----QNAHPRV------------------ADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHP++ + + +P V DQIRLW+ +L+RV
Sbjct: 110 IAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEG 169
Query: 141 HYYDEFPSRDVFEAACDYARDRSGLL 166
Y +F + + YA+D LL
Sbjct: 170 SLYSDFETSQEYNLLSKYAQDIGVLL 195
>gi|294660113|ref|XP_002777731.1| DEHA2G23254p [Debaryomyces hansenii CBS767]
gi|218511847|sp|Q6BGW8.2|TFB2_DEBHA RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|199434471|emb|CAR66042.1| DEHA2G23254p [Debaryomyces hansenii CBS767]
Length = 515
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 48/174 (27%)
Query: 41 SNS-QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGI 99
SNS QG +++ETNF++YAY+ S L IL LF ++ + N++ G T+ES+ NA NGI
Sbjct: 313 SNSNQGTIILETNFKIYAYTNSPLEIAILNLFVHLKTRFSNMVCGQITRESIRNALYNGI 372
Query: 100 TAEQ------QNAHPRVA-----------------------------------------D 112
TA+Q +AH ++
Sbjct: 373 TADQIIKFLETHAHSQMKILAKERLDKKIEFDTSNNINTAGGAPQSQMMTNENGTTVAQH 432
Query: 113 RIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
++ +P V DQI+LW+ +L+R++ + + +F S+ FEA +YA + LL
Sbjct: 433 KLEVLPPTVVDQIKLWQLELDRIQTFEGYLFKDFASQQEFEALSNYASEIGVLL 486
>gi|302917488|ref|XP_003052448.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733388|gb|EEU46735.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 496
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 72/129 (55%), Gaps = 11/129 (8%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+G V++ETN+R+YAY+ S L +L LFSK+ + P+++ G +++S+ A GITA+Q
Sbjct: 335 RGSVIIETNYRIYAYTQSTLQIAVLALFSKLSMRFPDMVAGRLSRQSIRQAINFGITADQ 394
Query: 104 ------QNAHPRV-----ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF 152
+AH ++ + P +P V DQIRLW+ + R++ T + +F +
Sbjct: 395 IISYLAAHAHDQMHRTAALNNKPVLPPTVVDQIRLWQLENERMKTTSGFLFKDFEDHKEY 454
Query: 153 EAACDYARD 161
A +A +
Sbjct: 455 MAVAGFAEE 463
>gi|444320663|ref|XP_004180988.1| hypothetical protein TBLA_0E04140 [Tetrapisispora blattae CBS 6284]
gi|387514031|emb|CCH61469.1| hypothetical protein TBLA_0E04140 [Tetrapisispora blattae CBS 6284]
Length = 518
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 28/154 (18%)
Query: 41 SNSQ----GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFE 96
SN+Q G +++ETNF++Y+YS S L +L LF ++ + N++ G T++S+ A
Sbjct: 321 SNTQATADGALIIETNFKLYSYSNSPLQIAVLSLFVHLKTRFSNMVTGQITRDSIRRALR 380
Query: 97 NGITAEQ------QNAHPRV------------------ADRIPSIPENVCDQIRLWESDL 132
NGITAEQ ++HP++ D + +P V DQI+LW+ +L
Sbjct: 381 NGITAEQIIAYLLTHSHPQMRRLAEGNLEKKLELDPNAKDSLQILPPTVVDQIKLWQLEL 440
Query: 133 NRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
+R+ Y +F + + YA D LL
Sbjct: 441 DRIISHEGSLYSDFENNQEYNLLSTYAEDIGVLL 474
>gi|149238950|ref|XP_001525351.1| TFIIH basal transcription factor complex subunit 2 [Lodderomyces
elongisporus NRRL YB-4239]
gi|146450844|gb|EDK45100.1| TFIIH basal transcription factor complex subunit 2 [Lodderomyces
elongisporus NRRL YB-4239]
Length = 503
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 42/155 (27%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
+++ETNF+MYAY+ S L IL LF ++ + N+I G T+ES+ NA NGITA+Q
Sbjct: 314 IIIETNFKMYAYTNSPLEIAILNLFVHMKTRFSNMICGQITRESIRNALYNGITADQIIK 373
Query: 104 ---QNAHPRV------------------------------------ADRIPSIPENVCDQ 124
+AHP++ R+ +P NV DQ
Sbjct: 374 FLETHAHPQMRALAKERLDKKVEFDASHNINTAGGAPQSKTDGAISQHRLEVLPPNVVDQ 433
Query: 125 IRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYA 159
I+LW+ +L+R++ + + +F ++ ++ +YA
Sbjct: 434 IKLWQLELDRIQTFDGYLFKDFANQQEYDMLSNYA 468
>gi|340939354|gb|EGS19976.1| RNA polymerase II transcription factor B subunit 2-like protein
[Chaetomium thermophilum var. thermophilum DSM 1495]
Length = 514
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 73/132 (55%), Gaps = 11/132 (8%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S +G +++ETN+R+YAY++S L +L LF+ + + ++ G T+ES+ A GIT
Sbjct: 350 SAHKGSIIIETNYRLYAYTSSPLQIAVLALFTHLNMRFAGMVTGRLTRESIRRAISFGIT 409
Query: 101 AEQ------QNAHPRV-----ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSR 149
A+Q +AH ++ A P +P V DQIRLW+ + R+ +P + +F +
Sbjct: 410 ADQIISYLASHAHEQMVRAAAAAGRPVLPPTVVDQIRLWQLENERMRTSPGFLFKDFENV 469
Query: 150 DVFEAACDYARD 161
+ + A YA +
Sbjct: 470 EEYMALAGYAEE 481
>gi|255713706|ref|XP_002553135.1| KLTH0D09790p [Lachancea thermotolerans]
gi|238934515|emb|CAR22697.1| KLTH0D09790p [Lachancea thermotolerans CBS 6340]
Length = 506
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 77/146 (52%), Gaps = 24/146 (16%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G V++ETNF++Y+YS S L +L LF ++ + N++ G T+ES+ A NGITA+Q
Sbjct: 331 GAVILETNFKLYSYSNSPLQIAVLSLFVHLKSRFSNMVTGQITRESIRRALHNGITADQI 390
Query: 104 -----QNAHP---RVADR---------------IPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHP R+A++ + +P V DQI+LW+ +L+R+
Sbjct: 391 IAYMETHAHPQMRRLAEQTLDKKMELDPNCNEGLQILPPTVVDQIKLWQLELDRIISYDG 450
Query: 141 HYYDEFPSRDVFEAACDYARDRSGLL 166
+ + +F + + YA+D LL
Sbjct: 451 YLFTDFENFQEYNMLSSYAKDIGVLL 476
>gi|302405781|ref|XP_003000727.1| RNA polymerase II transcription factor B subunit 2 [Verticillium
albo-atrum VaMs.102]
gi|261360684|gb|EEY23112.1| RNA polymerase II transcription factor B subunit 2 [Verticillium
albo-atrum VaMs.102]
Length = 476
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 71/125 (56%), Gaps = 18/125 (14%)
Query: 40 ISNSQGF-------VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLN 92
+S SQG ++VETN+R+YAY+TS+L +L LF + + P ++ G T++S+
Sbjct: 305 LSQSQGGPGDQTNGIIVETNYRVYAYTTSQLQIAVLSLFCHLSVKFPGMVSGRLTRQSVR 364
Query: 93 NAFENGITAEQ------QNAHPRV-----ADRIPSIPENVCDQIRLWESDLNRVEMTPAH 141
A + GITA+Q +AH ++ AD P +P V DQIRLW+ + R++ T
Sbjct: 365 QAIDFGITADQIISYLAAHAHEQMHRQAAADGKPVLPPTVVDQIRLWQLENERMKTTSGF 424
Query: 142 YYDEF 146
+ +F
Sbjct: 425 LFRDF 429
>gi|254584224|ref|XP_002497680.1| ZYRO0F11088p [Zygosaccharomyces rouxii]
gi|238940573|emb|CAR28747.1| ZYRO0F11088p [Zygosaccharomyces rouxii]
Length = 509
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 24/141 (17%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G ++VETNF++Y+YS S L IL LF ++ + N++ G T+ES+ A NGITA+Q
Sbjct: 334 GALIVETNFKLYSYSNSPLQIAILSLFVHMKSRFSNMVTGQLTRESIRQALLNGITADQI 393
Query: 104 -----QNAHPRV------------------ADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHP++ D + +P V DQI+LW+ +L+R+
Sbjct: 394 IAYLETHAHPQMRRMAEEQLEKRLELDPNSKDPLQILPPTVVDQIKLWQLELDRIISFEG 453
Query: 141 HYYDEFPSRDVFEAACDYARD 161
Y +F + F YA+D
Sbjct: 454 SLYSDFENHQEFTLLSSYAQD 474
>gi|448103836|ref|XP_004200137.1| Piso0_002710 [Millerozyma farinosa CBS 7064]
gi|359381559|emb|CCE82018.1| Piso0_002710 [Millerozyma farinosa CBS 7064]
Length = 512
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 45/174 (25%)
Query: 38 EYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFEN 97
+ SN+ G +++ETNF++YAY+ S L IL LF ++ + PN++ G T+ES+ A N
Sbjct: 310 QMFSNTGGSIILETNFKIYAYTNSPLEIAILNLFVHLKTRFPNMVTGQITRESIRKALFN 369
Query: 98 GITAEQ------QNAHPRVAD--------------------------------------- 112
GITA+Q +AH ++
Sbjct: 370 GITADQIIKFLESHAHSQMKQMAKENLDKKIEFDANNNINTATDNQQLSVGEFGSANSYH 429
Query: 113 RIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
++ +P V DQI+LW+ +L+R++ + + +F S+ ++A YA + LL
Sbjct: 430 KLEVLPPTVVDQIKLWQLELDRIQTFEGYLFKDFSSQQEYDALRSYASELGVLL 483
>gi|354546081|emb|CCE42810.1| hypothetical protein CPAR2_204530 [Candida parapsilosis]
Length = 451
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 42/163 (25%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S S+ +++ETNF++YAY+ S L IL LF +++ + N++ G T+ES+ NA NGIT
Sbjct: 255 STSRESIIIETNFKIYAYTNSPLEIAILNLFVQMKTRFSNMVCGQITRESIRNALYNGIT 314
Query: 101 AEQ------QNAHPRVA------------------------------------DRIPSIP 118
++Q +AHP++ ++ IP
Sbjct: 315 SDQIIKFLETHAHPQMKALAKEKLDKKVEFDASHNINTAGGAPQSKTDGTISQHKLEVIP 374
Query: 119 ENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 161
NV DQI+LW+ +L+R++ + + +F ++ ++ +YA +
Sbjct: 375 PNVVDQIKLWQLELDRIQTVEGYLFKDFANQQEYDMLSNYATE 417
>gi|367009216|ref|XP_003679109.1| hypothetical protein TDEL_0A05660 [Torulaspora delbrueckii]
gi|359746766|emb|CCE89898.1| hypothetical protein TDEL_0A05660 [Torulaspora delbrueckii]
Length = 513
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 24/146 (16%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE-- 102
G ++VETNF++Y+YS S L IL LF ++ + N++ G T+ES+ A NGITA+
Sbjct: 334 GALIVETNFKLYSYSNSPLQIAILSLFVHLKSRFTNMVTGQITRESIRRALINGITADQI 393
Query: 103 ----QQNAHPRV------------------ADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
Q +AHP++ D + +P V DQI+LW+ +L+R+
Sbjct: 394 IAYLQTHAHPQMRRLAEEKLEKKLELDANCKDTLQILPPTVVDQIKLWQLELDRIISYDG 453
Query: 141 HYYDEFPSRDVFEAACDYARDRSGLL 166
Y + S + YA+D LL
Sbjct: 454 SLYSDIDSHQEYILLSTYAQDIGVLL 479
>gi|346972761|gb|EGY16213.1| RNA polymerase II transcription factor B subunit 2 [Verticillium
dahliae VdLs.17]
Length = 476
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 66/111 (59%), Gaps = 11/111 (9%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
++VETN+R+YAY+TS+L +L LF + + P ++ G T++S+ A + GITA+Q
Sbjct: 319 IIVETNYRVYAYTTSQLQIAVLSLFCHLSVKFPGMVSGRLTRQSVRQAIDFGITADQIIS 378
Query: 104 ---QNAHPRV-----ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEF 146
+AH ++ AD P +P V DQIRLW+ + R++ T + +F
Sbjct: 379 YLAAHAHEQMHRQAAADGKPVLPPTVVDQIRLWQLENERMKTTSGFLFRDF 429
>gi|428673252|gb|EKX74165.1| conserved hypothetical protein [Babesia equi]
Length = 668
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 74/119 (62%), Gaps = 4/119 (3%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQQNA 106
++V++NF++Y Y+ + L ++IL + +++ + PN++VG T+ES AF++GIT+ +
Sbjct: 494 IIVQSNFKVYVYTVNNLQFDILNILCEVQARTPNMVVGVLTRESAQRAFKSGITS-HEII 552
Query: 107 HPRVADRIPSIPENVCDQIRLWESDLNRVEMTPA---HYYDEFPSRDVFEAACDYARDR 162
+ + PENV Q+R+WE++ NRVE++PA +D D+F+ +A+ +
Sbjct: 553 RFFSSTNTSTFPENVIRQLRMWEAERNRVELSPAILIKRWDREFLPDLFQRTVRWAQSK 611
>gi|366991461|ref|XP_003675496.1| hypothetical protein NCAS_0C01390 [Naumovozyma castellii CBS 4309]
gi|342301361|emb|CCC69129.1| hypothetical protein NCAS_0C01390 [Naumovozyma castellii CBS 4309]
Length = 516
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 24/146 (16%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G +++ETNF++Y+YS S L L LF ++ + N++ G T+ES+ A NGITA+Q
Sbjct: 341 GSLIIETNFKLYSYSNSPLQIATLSLFVHLKSRFANMVTGQITRESIRRALINGITADQI 400
Query: 104 -----QNAHPRV------------------ADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHP++ D + +P V DQI+LW+ +L+RV
Sbjct: 401 IAYLETHAHPQMRRLAEERLEKKLELDPNSKDPLQVLPPTVVDQIKLWQLELDRVITYEG 460
Query: 141 HYYDEFPSRDVFEAACDYARDRSGLL 166
Y +F + + YA+D LL
Sbjct: 461 SLYSDFETIAEYTTLSKYAQDIGVLL 486
>gi|448100135|ref|XP_004199281.1| Piso0_002710 [Millerozyma farinosa CBS 7064]
gi|359380703|emb|CCE82944.1| Piso0_002710 [Millerozyma farinosa CBS 7064]
Length = 509
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 45/174 (25%)
Query: 38 EYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFEN 97
+ SN+ G +++ETNF++YAY+ S L IL LF ++ + PN++ G T+ES+ A N
Sbjct: 310 QMFSNTGGSIILETNFKIYAYTNSPLEIAILNLFVHLKTRFPNMVTGQITRESIRKALFN 369
Query: 98 GITAEQ------QNAHPRVAD--------------------------------------- 112
GITA+Q +AH ++
Sbjct: 370 GITADQIIKFLESHAHSQMKQMAKENLDKKIEFDANNNINTATDSQQLSVGEFGSASSYH 429
Query: 113 RIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
++ +P V DQI+LW+ +L+R++ + + +F S+ ++A +YA + LL
Sbjct: 430 KLEILPPTVVDQIKLWQLELDRIQTFEGYLFKDFSSQQEYDALRNYASELGVLL 483
>gi|342884444|gb|EGU84659.1| hypothetical protein FOXB_04847 [Fusarium oxysporum Fo5176]
Length = 496
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 11/117 (9%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
+ +G V++ETN+R+YAY+ S L +L LF+K+ + P+++ G +++S+ A + GIT
Sbjct: 332 TEQRGSVIIETNYRIYAYTQSTLQIAVLALFTKLAMRFPDMVAGRISRQSIRQAIQFGIT 391
Query: 101 AEQ------QNAHPRV-----ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEF 146
AEQ +AH ++ + P +P V DQIRLW+ + R++ T + F
Sbjct: 392 AEQIISYLSAHAHDQMHRTAALNNKPVLPPTVVDQIRLWQLENERMKTTSGFLFKSF 448
>gi|150863860|ref|XP_001382481.2| RNA polymerase II transcription factor B subunit 2 (RNA polymerase
II transcription factor B p52 subunit) (RNA polymerase
II transcription factor B 52 kDa subunit)
[Scheffersomyces stipitis CBS 6054]
gi|149385116|gb|ABN64452.2| RNA polymerase II transcription factor B subunit 2 (RNA polymerase
II transcription factor B p52 subunit) (RNA polymerase
II transcription factor B 52 kDa subunit)
[Scheffersomyces stipitis CBS 6054]
Length = 515
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 44/165 (26%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
+ +QG V++ETNF++YAY+ S L IL LF ++ + N++ G T+ES+ +A NGIT
Sbjct: 314 TGNQGTVIIETNFKLYAYTNSPLEIAILNLFVHLKSRFTNMVCGQITRESIRSALYNGIT 373
Query: 101 AEQ------QNAHPRVA--------------------------------------DRIPS 116
A+Q +AHP++ ++
Sbjct: 374 ADQIIKFLETHAHPQMKLLAKEKLDKKIEFDTSHNINTAGGAPQSKVSGEGNVAQHKLEI 433
Query: 117 IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 161
+P V DQI+LW+ +L+R++ + + +F ++ F+ +YA +
Sbjct: 434 LPPTVVDQIKLWQLELDRIQTFDGYLFKDFSNQQEFDTLSNYASE 478
>gi|223993063|ref|XP_002286215.1| transcription factor of TFIIH family [Thalassiosira pseudonana
CCMP1335]
gi|220977530|gb|EED95856.1| transcription factor of TFIIH family [Thalassiosira pseudonana
CCMP1335]
Length = 461
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 74/137 (54%), Gaps = 16/137 (11%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIE--YQLPNLIVGATTKESLNNAFENG 98
S S VVV+TNF++ AY+ SKLH L LF + +LPN+I T++S+ +AF G
Sbjct: 327 SRSHLAVVVQTNFQVVAYTKSKLHISTLGLFCDVSSFRRLPNVIFFHITRDSIRSAFRLG 386
Query: 99 ITAEQ------QNAHP--RVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 150
+TA+Q +AHP R DR P +P NV DQI LW+ + +RV M + RD
Sbjct: 387 VTADQILRFLHVHAHPMLRSGDR-PMVPSNVVDQILLWDRERHRVVMDEVCVHQ---CRD 442
Query: 151 V--FEAACDYARDRSGL 165
F A YA D L
Sbjct: 443 AAEFTAVSQYASDVDAL 459
>gi|355693906|gb|AER99491.1| proteinral transcription factor IIH, polypeptide 4, 52kDa [Mustela
putorius furo]
Length = 143
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 6/112 (5%)
Query: 61 SKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ------QNAHPRVADRI 114
S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q AHP + +
Sbjct: 2 SELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQT 61
Query: 115 PSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
P +P + DQIRLWE + +R+ T Y++F S+ FE +AR+ L+
Sbjct: 62 PVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLV 113
>gi|449017614|dbj|BAM81016.1| similar to TFIIH subunit TFB2 [Cyanidioschyzon merolae strain 10D]
Length = 693
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 37 REYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFE 96
R +S S ++VETNFR+YAY+ S +L LF++I Y++P + +G T++S+ A +
Sbjct: 528 RSILSGSPFQIIVETNFRLYAYAASSFQVALLSLFTRILYRMPGVAIGVITRDSVRRALK 587
Query: 97 NGITAEQ----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEF-PSRD 150
GITA+Q H S+P NV DQI LWE + R++ P + F P+ D
Sbjct: 588 CGITAKQLLHFLGIHSMEGK---SVPFNVHDQILLWELERKRIQAYPGVLLEGFEPTSD 643
>gi|221502519|gb|EEE28246.1| tfiih, polypeptide, putative [Toxoplasma gondii VEG]
Length = 836
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/105 (37%), Positives = 67/105 (63%), Gaps = 11/105 (10%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
++V++NF++Y Y+ S L +L +++ ++PNLIVG T+ S+ A+++GITA+Q
Sbjct: 650 MLVQSNFKVYVYTASALQLSVLSHLCELQARMPNLIVGILTRASVLAAYKSGITADQIIR 709
Query: 104 ---QNAHPRVADR-----IPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHP V +R P +PENV Q+R+WE++ R+ + PA
Sbjct: 710 FLEAHAHPVVLERKLRTNAPLLPENVTIQLRMWEAERMRLSLYPA 754
>gi|402083674|gb|EJT78692.1| RNA polymerase II transcription factor B subunit 2 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 496
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 77/135 (57%), Gaps = 12/135 (8%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
++G +++ETN+R+YAY+++ L IL LF+++ ++ ++ G +ES+ A GITA+
Sbjct: 333 AKGSIIIETNYRLYAYTSTPLQIAILGLFAELRFRFAGMVTGRLDRESIKRAISYGITAD 392
Query: 103 Q------QNAHPRV-----ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDV 151
Q +AH ++ + P +P V DQIRLW+ + R+++ + +F S+
Sbjct: 393 QVIEYLAAHAHEQMHRTATLRKKPVLPPTVVDQIRLWQLETERMKIMRGFLFRDFDSQAE 452
Query: 152 FEAACDYARDRSGLL 166
++ YA D G+L
Sbjct: 453 YDDLAKYA-DEIGVL 466
>gi|237842971|ref|XP_002370783.1| hypothetical protein TGME49_014520 [Toxoplasma gondii ME49]
gi|211968447|gb|EEB03643.1| hypothetical protein TGME49_014520 [Toxoplasma gondii ME49]
Length = 836
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/105 (37%), Positives = 67/105 (63%), Gaps = 11/105 (10%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
++V++NF++Y Y+ S L +L +++ ++PNLIVG T+ S+ A+++GITA+Q
Sbjct: 650 MLVQSNFKVYVYTASALQLSVLSHLCELQARMPNLIVGILTRASVLAAYKSGITADQIIR 709
Query: 104 ---QNAHPRVADR-----IPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHP V +R P +PENV Q+R+WE++ R+ + PA
Sbjct: 710 FLEAHAHPVVLERKLRTNAPLLPENVTIQLRMWEAERMRLSLYPA 754
>gi|322697444|gb|EFY89224.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Metarhizium acridum CQMa 102]
Length = 541
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 22/147 (14%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ +G V+VETN+R+YAY+ S L +L LF K+ + P+++ G T+ S++ A GIT
Sbjct: 377 ADQKGSVIVETNYRIYAYTQSTLQIAVLALFCKLNMRFPDMVAGRVTRTSIHQAINFGIT 436
Query: 101 AEQ------QNAHPR------VADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPS 148
A+Q +AH + +A++ P +P V DQIRLW+ + R++ T + +F
Sbjct: 437 ADQIISYLAAHAHEQMHRTAALANK-PILPPTVVDQIRLWQLENERMKTTGGFLFRDFED 495
Query: 149 RDVFEAACDYAR---------DRSGLL 166
F +A D+SG+
Sbjct: 496 HKEFLDTARFAEEIGVLVWRSDKSGMF 522
>gi|401887601|gb|EJT51582.1| hypothetical protein A1Q1_07170 [Trichosporon asahii var. asahii
CBS 2479]
gi|406699646|gb|EKD02845.1| hypothetical protein A1Q2_02789 [Trichosporon asahii var. asahii
CBS 8904]
Length = 451
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 81/139 (58%), Gaps = 9/139 (6%)
Query: 35 IVREYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNA 94
+ R ++ + F+++ETN+R+YAY++++L IL LF I + PNLIVG + + A
Sbjct: 276 VNRSATADDKRFLILETNYRVYAYTSNELEIAILNLFVNITIRYPNLIVGHLDRRHVKAA 335
Query: 95 FENGITAEQ------QNAHPRVADRIPSIPE-NVCDQIRLWESDLNRVEMTPAHYYDEFP 147
+ GI+A Q +AHP++ + P + +V DQ+ LW+ + NRV+ + EF
Sbjct: 336 MDKGISAYQIISYLTTHAHPQMYNHPPPLLHPSVTDQLHLWDRERNRVQAQDTVMF-EFY 394
Query: 148 SRDVFEAACDYARDRSGLL 166
S+++FE D A +R G L
Sbjct: 395 SKELFETCRDEA-ERMGAL 412
>gi|326435722|gb|EGD81292.1| hypothetical protein PTSG_11329 [Salpingoeca sp. ATCC 50818]
Length = 545
Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 11/132 (8%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQQ 104
GF+V+ETNFR+YAY+ S L +L+LF+K Y+LP ++V + T+ S+ A GITA Q
Sbjct: 291 GFLVIETNFRIYAYTKSDLKISLLKLFAKPLYKLPTMLVASITRSSVRQAMAQGITARQI 350
Query: 105 NAHPRV--ADRI--------PSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
+V + R+ +P V DQI LWE + +R+ T + P + +F
Sbjct: 351 LHFLKVHCSSRMRHQPHSVFSPVPPTVSDQILLWEQETSRLSKTEGVLFRHLP-KPIFPK 409
Query: 155 ACDYARDRSGLL 166
+ ++R +
Sbjct: 410 LLAFVKERQACI 421
>gi|367030175|ref|XP_003664371.1| hypothetical protein MYCTH_2307126 [Myceliophthora thermophila ATCC
42464]
gi|347011641|gb|AEO59126.1| hypothetical protein MYCTH_2307126 [Myceliophthora thermophila ATCC
42464]
Length = 512
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 11/135 (8%)
Query: 38 EYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFEN 97
E + S+G V++ETN+R+YAY++S L +L LF+++ + + G T++S+ A
Sbjct: 345 ETSAASKGSVIIETNYRLYAYTSSPLQIAVLALFTQLNMRFAGMATGRLTRDSIRRAIGF 404
Query: 98 GITAEQ------QNAHPRV-----ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEF 146
GITA+Q +AH ++ A P +P V DQIRLW+ + R+ + + +F
Sbjct: 405 GITADQIISYLASHAHEQMVRAAAATGRPVLPPTVVDQIRLWQLENERMRTSAGFLFKDF 464
Query: 147 PSRDVFEAACDYARD 161
S D + + YA +
Sbjct: 465 DSLDEYLSLSAYAEE 479
>gi|254573074|ref|XP_002493646.1| Subunit of TFIIH and nucleotide excision repair factor 3 complexes
[Komagataella pastoris GS115]
gi|238033445|emb|CAY71467.1| Subunit of TFIIH and nucleotide excision repair factor 3 complexes
[Komagataella pastoris GS115]
gi|328354526|emb|CCA40923.1| RNA polymerase II transcription factor B subunit 2 [Komagataella
pastoris CBS 7435]
Length = 547
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 33/155 (21%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
G +V+ETNF++Y Y+TS L IL LF + + N++ G T+ES+ A NGITA+Q
Sbjct: 362 HGSIVLETNFKLYCYTTSPLQIAILNLFVHLRTRFANMVTGMITRESVREALRNGITADQ 421
Query: 104 ------QNAHPRVAD--------------------------RIPSIPENVCDQIRLWESD 131
+AH ++ ++ IP V DQI+LW+ +
Sbjct: 422 IIKYLETHAHSQMKKLAEEKLLKKLEFDSNATETQQIGSQVKLEVIPPTVVDQIKLWQLE 481
Query: 132 LNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
++R++ + +F + FE +YA D G++
Sbjct: 482 MDRLQTFAGFLFKDFANAQEFEQLANYA-DEVGVM 515
>gi|346323394|gb|EGX92992.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Cordyceps militaris CM01]
Length = 511
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 66/113 (58%), Gaps = 11/113 (9%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G VV+ETN+R+YAY+ S L +L LF+++ + P+++ G T+ S+ A + GITA+Q
Sbjct: 351 GAVVIETNYRLYAYTQSTLQIAVLALFARLTMRFPDMVAGRLTRTSIRQAIQFGITADQI 410
Query: 104 -----QNAHPRV-----ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEF 146
+AH ++ P +P V DQIRLW+ + R++ TP + +F
Sbjct: 411 IAYLAAHAHEQMHRTAALTNKPVLPPTVVDQIRLWQLENERMKTTPGFLFRDF 463
>gi|116201905|ref|XP_001226764.1| hypothetical protein CHGG_08837 [Chaetomium globosum CBS 148.51]
gi|88177355|gb|EAQ84823.1| hypothetical protein CHGG_08837 [Chaetomium globosum CBS 148.51]
Length = 503
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 77/140 (55%), Gaps = 12/140 (8%)
Query: 38 EYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFEN 97
E + S+G V++ETN+R+YAY++S L +L LF+++ + + G T++S+ A
Sbjct: 336 ETSAASKGSVIIETNYRLYAYTSSPLQIAVLGLFTQLNMRFAGMATGRLTRDSIRRAIGF 395
Query: 98 GITAEQ------QNAHPRV-----ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEF 146
GITA+Q +AH ++ A P +P V DQIRLW+ + R+ + + +F
Sbjct: 396 GITADQIISYLASHAHDQMVRAAAATGRPVLPPTVVDQIRLWQLENERMRTSAGFLFKDF 455
Query: 147 PSRDVFEAACDYARDRSGLL 166
S + + + YA D G+L
Sbjct: 456 DSLEEYVSLSSYA-DEVGVL 474
>gi|71033737|ref|XP_766510.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353467|gb|EAN34227.1| hypothetical protein, conserved [Theileria parva]
Length = 359
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 79/135 (58%), Gaps = 19/135 (14%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
++V++NF++Y Y+ S L +L +++ + PNL+VG T+ES+ +AF++GIT+++
Sbjct: 164 IIVQSNFKVYVYTASPLQISVLSHLCELQARTPNLVVGVLTRESVQSAFKSGITSKEIIR 223
Query: 104 ----QNAHPRVADR---------IPSIPENVCDQIRLWESDLNRVEMTPA---HYYDEFP 147
+ + ++ SIPENVC Q+++WES+ +R+E+ P+ +D+
Sbjct: 224 FLSPNGMNSSIGNQENTLLNSTFTYSIPENVCRQLKMWESERDRIELCPSIVFKRWDQDF 283
Query: 148 SRDVFEAACDYARDR 162
D+F+ +A+ +
Sbjct: 284 MPDLFQRTVRWAQSK 298
>gi|406604717|emb|CCH43852.1| RNA polymerase II transcription factor B subunit 2 [Wickerhamomyces
ciferrii]
Length = 488
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 26/152 (17%)
Query: 40 ISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGI 99
I NS G +++ETNF++YAY+ S L IL LF ++ + NL+ G T+ES+ A +GI
Sbjct: 307 IENS-GTIIIETNFKVYAYTNSPLQIAILNLFVHLKARFSNLVTGQITRESIRKALVSGI 365
Query: 100 TAEQ------QNAHPRV-------------------ADRIPSIPENVCDQIRLWESDLNR 134
T+EQ +AHP++ ++I + + DQI+LW+ +L+R
Sbjct: 366 TSEQIISYLESHAHPQLRRAAEEELNKKNGFESNNHGEKIQILQPTIADQIKLWQLELDR 425
Query: 135 VEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
+ + + +F S ++ Y+ + LL
Sbjct: 426 IMSFDGYLFTDFSSDQEYQVLSKYSEEIGVLL 457
>gi|221482097|gb|EEE20458.1| tfiih, polypeptide, putative [Toxoplasma gondii GT1]
Length = 861
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 39/105 (37%), Positives = 67/105 (63%), Gaps = 11/105 (10%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
++V++NF++Y Y+ S L +L +++ ++PNLIVG T+ S+ A+++GITA+Q
Sbjct: 675 MLVQSNFKVYVYTASALQLSVLSHLCELQARMPNLIVGILTRASVLAAYKSGITADQIIR 734
Query: 104 ---QNAHPRVADR-----IPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHP V +R P +PENV Q+R+WE++ R+ + PA
Sbjct: 735 FLEAHAHPVVLERKLRTNAPLLPENVTIQLRMWEAERMRLSLYPA 779
>gi|367040709|ref|XP_003650735.1| hypothetical protein THITE_2110518 [Thielavia terrestris NRRL 8126]
gi|346997996|gb|AEO64399.1| hypothetical protein THITE_2110518 [Thielavia terrestris NRRL 8126]
Length = 513
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 11/130 (8%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
++G +++ETN+R+YAY++S L +L LF+++ + ++ G T++S+ A GITA+
Sbjct: 351 TKGSLIIETNYRLYAYTSSPLQIAVLALFTQLNMRFAGMVTGRLTRDSIRRAISFGITAD 410
Query: 103 Q------QNAHPRV-----ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDV 151
Q +AH ++ A P +P V DQIRLW+ + R+ T + +F S +
Sbjct: 411 QIISYLASHAHEQMTRAAAAAGRPVLPPTVVDQIRLWQLENERMRTTAGFLFKDFDSPEE 470
Query: 152 FEAACDYARD 161
+ + YA +
Sbjct: 471 YVSLSGYAEE 480
>gi|401410644|ref|XP_003884770.1| hypothetical protein NCLIV_051680 [Neospora caninum Liverpool]
gi|325119188|emb|CBZ54742.1| hypothetical protein NCLIV_051680 [Neospora caninum Liverpool]
Length = 868
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 67/105 (63%), Gaps = 11/105 (10%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
++V++NF++Y Y+ S L +L +++ ++PNLIVG T+ S+ A+++GITA+Q
Sbjct: 682 MLVQSNFKVYVYTASALQLSVLSHLCELQARMPNLIVGILTRASVLAAYKSGITADQIIR 741
Query: 104 ---QNAHPRVADR-----IPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHP V +R P +PENV Q+R+WE++ R+ + PA
Sbjct: 742 FLEAHAHPVVLERKLRTNAPLLPENVTIQLRMWEAERMRLSLYPA 786
>gi|321265552|ref|XP_003197492.1| subunit of TFIIH and nucleotide excision repair factor 3 complexes
[Cryptococcus gattii WM276]
gi|317463972|gb|ADV25705.1| Subunit of TFIIH and nucleotide excision repair factor 3 complexes,
putative [Cryptococcus gattii WM276]
Length = 481
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 78/132 (59%), Gaps = 8/132 (6%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ + F+++ETN+++YAY++++L IL LF I + PNL+VG ++ + A E GI+
Sbjct: 316 ADDKRFLILETNYKIYAYTSNELEIAILNLFVDIRIRYPNLVVGKLDRQHVKAAMEKGIS 375
Query: 101 AEQ------QNAHPRVADRIPSIPE-NVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 153
A Q +AHP++ + P + + DQ+ LW+ + NR++ Y EF S+++F+
Sbjct: 376 ARQIIAYLSSHAHPQMYNSPPPLLHPTIVDQLHLWDRERNRLQTEETVMY-EFFSKELFD 434
Query: 154 AACDYARDRSGL 165
+ A+ + L
Sbjct: 435 DTVNEAKANAAL 446
>gi|400597688|gb|EJP65418.1| RNA polymerase II transcription factor B subunit 2 [Beauveria
bassiana ARSEF 2860]
Length = 507
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 45/134 (33%), Positives = 76/134 (56%), Gaps = 14/134 (10%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G +V+ETN+R+YAY+ S L +L LFS++ + P+++ G T+ S+ A + GITA+Q
Sbjct: 347 GSIVIETNYRLYAYTQSTLQIAVLALFSRLTMRFPDMVAGRITRTSIRQAIQFGITADQI 406
Query: 104 -----QNAHPR------VADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF 152
+AH + +A R P +P V DQIRLW+ + R++ T + +F + +
Sbjct: 407 IAYLAAHAHEQMHRSAALAAR-PVLPPTVVDQIRLWQLENERMKTTGGFLFRDFDDQKEY 465
Query: 153 EAACDYARDRSGLL 166
+ +A D G+L
Sbjct: 466 QDTRRFA-DEIGVL 478
>gi|241958748|ref|XP_002422093.1| TFIIH subunit, putative; tanscription initiation factor IIB,
putative [Candida dubliniensis CD36]
gi|223645438|emb|CAX40094.1| TFIIH subunit, putative [Candida dubliniensis CD36]
Length = 494
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 42/166 (25%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
S+ +++ETNF++YAY+ S L IL LF + + N++ G T+ES+ NA NGITA+
Sbjct: 300 SKESIIIETNFKIYAYTKSPLEIAILNLFVHFKTRFANMVCGQITRESIRNALYNGITAD 359
Query: 103 Q------QNAHPRV------------------------------------ADRIPSIPEN 120
Q +AHP++ ++ +P N
Sbjct: 360 QIIKFLETHAHPQMRILAKEKLDKKIEFDTSHNINTAGGAPQSKTDGMISQHKLEILPPN 419
Query: 121 VCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
V DQI+LW+ +L+R++ + + +F ++ ++ +YA + L+
Sbjct: 420 VVDQIKLWQLELDRIQTFDGYLFKDFSNQQEYDILSNYASELGVLI 465
>gi|405123868|gb|AFR98631.1| transcription factor TFIIH complex subunit Tfb2 [Cryptococcus
neoformans var. grubii H99]
Length = 481
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 78/132 (59%), Gaps = 8/132 (6%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ + F+++ETN+++YAY++++L IL LF I + PNL+VG ++ + A E GI+
Sbjct: 316 ADDKRFLILETNYKIYAYTSNELEIAILNLFVDIRIRYPNLVVGKLDRQHVKAAMEKGIS 375
Query: 101 AEQ------QNAHPRVADRIPSIPE-NVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 153
A Q +AHP++ + P + + DQ+ LW+ + NR++ Y EF S+++F+
Sbjct: 376 AGQIIAYLSSHAHPQMYNSPPPLLHPTIVDQLHLWDRERNRLQTEETVMY-EFFSKELFD 434
Query: 154 AACDYARDRSGL 165
+ A+ + L
Sbjct: 435 DTVNEAKANAAL 446
>gi|68490740|ref|XP_710812.1| hypothetical protein CaO19.13268 [Candida albicans SC5314]
gi|68490763|ref|XP_710801.1| hypothetical protein CaO19.5846 [Candida albicans SC5314]
gi|46432046|gb|EAK91553.1| hypothetical protein CaO19.5846 [Candida albicans SC5314]
gi|46432058|gb|EAK91564.1| hypothetical protein CaO19.13268 [Candida albicans SC5314]
gi|238879997|gb|EEQ43635.1| TFIIH basal transcription factor complex subunit 2 [Candida
albicans WO-1]
Length = 494
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 42/162 (25%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
+++ETNF++YAY+ S L IL LF + + N++ G T+ES+ NA NGITA+Q
Sbjct: 304 IIIETNFKIYAYTKSPLEIAILNLFVHFKTRFANMVCGQITRESIRNALYNGITADQIIK 363
Query: 104 ---QNAHPRV------------------------------------ADRIPSIPENVCDQ 124
+AHP++ ++ +P NV DQ
Sbjct: 364 FLETHAHPQMRILAKEKLDKKIEFDTSHNINTAGGAPQSKTDGMVSQHKLEILPPNVVDQ 423
Query: 125 IRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
I+LW+ +L+R++ + + +F ++ ++ +YA + L+
Sbjct: 424 IKLWQLELDRIQTFDGYLFKDFSNQQEYDILSNYASELGVLI 465
>gi|66358470|ref|XP_626413.1| possible transcription factor TFIIH [Cryptosporidium parvum Iowa
II]
gi|46227864|gb|EAK88784.1| possible transcription factor TFIIH [Cryptosporidium parvum Iowa
II]
Length = 709
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 76/135 (56%), Gaps = 15/135 (11%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
++V++NFR+Y Y+ S L +ILR +++ + PN+I G T++ L +A+ G++AEQ
Sbjct: 528 IIVQSNFRIYCYTASPLQAKILRHLCQVKVRGPNIICGILTRKGLLSAYSMGVSAEQILR 587
Query: 104 ---QNAHPRVADRI-----PSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSR----DV 151
NAHP + R IP NV Q++LWE D NR++++ A + ++ + +
Sbjct: 588 FFSSNAHPIILRRFMLEGTSIIPVNVETQLKLWEKDKNRLKISHASTFSDWGASPNDIQL 647
Query: 152 FEAACDYARDRSGLL 166
F YAR + LL
Sbjct: 648 FRQTILYARSKDILL 662
>gi|134118870|ref|XP_771938.1| hypothetical protein CNBN1180 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254542|gb|EAL17291.1| hypothetical protein CNBN1180 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 481
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 78/132 (59%), Gaps = 8/132 (6%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ + F+++ETN+++YAY++++L IL LF I + PNL+VG ++ + A E GI+
Sbjct: 316 ADDKRFLILETNYKIYAYTSNELEIAILNLFVDIRIRYPNLVVGKLDRQHVKAAMEKGIS 375
Query: 101 AEQ------QNAHPRVADRIPSIPE-NVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 153
A Q +AHP++ + P + + DQ+ LW+ + NR++ Y EF S+++F+
Sbjct: 376 ARQIIAYLSSHAHPQMYNSPPPLLHPTIVDQLYLWDRERNRLQTEETVMY-EFFSKELFD 434
Query: 154 AACDYARDRSGL 165
+ A+ + L
Sbjct: 435 DTVNEAKANAAL 446
>gi|58262306|ref|XP_568563.1| hypothetical protein CNN01190 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57230737|gb|AAW47046.1| hypothetical protein CNN01190 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 481
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 78/132 (59%), Gaps = 8/132 (6%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ + F+++ETN+++YAY++++L IL LF I + PNL+VG ++ + A E GI+
Sbjct: 316 ADDKRFLILETNYKIYAYTSNELEIAILNLFVDIRIRYPNLVVGKLDRQHVKAAMEKGIS 375
Query: 101 AEQ------QNAHPRVADRIPSIPE-NVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 153
A Q +AHP++ + P + + DQ+ LW+ + NR++ Y EF S+++F+
Sbjct: 376 ARQIIAYLSSHAHPQMYNSPPPLLHPTIVDQLYLWDRERNRLQTEETVMY-EFFSKELFD 434
Query: 154 AACDYARDRSGL 165
+ A+ + L
Sbjct: 435 DTVNEAKANAAL 446
>gi|422294120|gb|EKU21420.1| transcription initiation factor TFIIH subunit 4, partial
[Nannochloropsis gaditana CCMP526]
Length = 213
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 7/101 (6%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
SQ V+VETN+++ AY++S LH E+LR+F+ + +LPN+++G T+ S+ A +GITA
Sbjct: 80 SQLAVIVETNYQLVAYTSSSLHVEMLRIFTDVRCRLPNVVIGFITRASVRRAMASGITAA 139
Query: 103 Q----QNAHPRVADRIPS---IPENVCDQIRLWESDLNRVE 136
H VA R +PENV QI LW + +RV+
Sbjct: 140 TILSFLKTHTHVAVRAGKGRLLPENVEAQIELWHQERSRVK 180
>gi|344229873|gb|EGV61758.1| transcription factor Tfb2 [Candida tenuis ATCC 10573]
Length = 498
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 38/156 (24%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
Q +++ETNF++Y+Y+ S L IL LF + + N++ G T+ES+ NA NGITA Q
Sbjct: 311 QESIIIETNFKVYSYTQSPLEIAILNLFVHLRTRFANMVTGQITRESIRNALYNGITAGQ 370
Query: 104 ------QNAHPRVA--------------------------------DRIPSIPENVCDQI 125
+AHP++ ++ +P NV DQI
Sbjct: 371 VIKFLETHAHPQMKMLAQEKLDKKIEFDASNNINTATGKSTDAPMQHKLEILPPNVVDQI 430
Query: 126 RLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 161
+LW+ +L+R++ + + EF ++ +E+ +YA +
Sbjct: 431 KLWQLELDRIQTFDGYLFREFNNQIDYESLRNYASE 466
>gi|84998132|ref|XP_953787.1| TFIIH subunit, Tf2b [Theileria annulata]
gi|65304784|emb|CAI73109.1| TFIIH subunit, Tf2b homologue, putative [Theileria annulata]
Length = 645
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 77/135 (57%), Gaps = 19/135 (14%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
++V++NF++Y Y+ S L +L +++ + PNL+VG T+ES+ +AF++GIT+++
Sbjct: 451 IIVQSNFKVYVYTASPLQISVLSHLCELQARTPNLVVGVLTRESVQSAFKSGITSKEIIR 510
Query: 104 -------------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPA---HYYDEFP 147
Q + SIPENVC Q+++WES+ +R+E+ P+ +D+
Sbjct: 511 FLSPNGMNSSIGSQENTLLNSSFTYSIPENVCRQLKMWESERDRIELCPSIVFKRWDQDF 570
Query: 148 SRDVFEAACDYARDR 162
D+F+ +A+ +
Sbjct: 571 MPDLFQRTVRWAQSK 585
>gi|361130709|gb|EHL02459.1| putative RNA polymerase II transcription factor B subunit 2 [Glarea
lozoyensis 74030]
Length = 210
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 19/138 (13%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S + GF+++ETN+ S L +L LF+K+ + PN++ G T+ES+ A +GI+
Sbjct: 52 SGTAGFIIIETNYH------SPLQIAVLALFTKLTTRYPNMVTGRVTRESVYRAVSSGIS 105
Query: 101 AEQ------QNAHPRVADRI------PSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPS 148
++Q +AHP + P +P V DQIRLW+ + R++ T + +F S
Sbjct: 106 SDQIITYLSTHAHPELLKASAAKGGGPVLPPTVVDQIRLWQIENERMKTTYGFLFKDFES 165
Query: 149 RDVFEAACDYARDRSGLL 166
D ++ YA D G+L
Sbjct: 166 TDEYKKLLKYA-DEIGVL 182
>gi|255721741|ref|XP_002545805.1| TFIIH basal transcription factor complex subunit 2 [Candida
tropicalis MYA-3404]
gi|240136294|gb|EER35847.1| TFIIH basal transcription factor complex subunit 2 [Candida
tropicalis MYA-3404]
Length = 494
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 42/162 (25%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
+++ETNF++YAY+ S L IL LF +++ + N++ G T+ES+ NA NGITA+Q
Sbjct: 304 IIIETNFKLYAYTKSPLEIAILNLFVQLKTRFANMVCGQITRESIRNALYNGITADQIIK 363
Query: 104 ---QNAHPRV------------------------------------ADRIPSIPENVCDQ 124
+AH ++ ++ +P NV DQ
Sbjct: 364 FLETHAHSQMRILAKEKLDKKIEFDTSHNINTAGGAPQSKTDGSISQHKLEILPPNVVDQ 423
Query: 125 IRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
I+LW+ +L+R++ + + +F ++ ++ +YA + L+
Sbjct: 424 IKLWQLELDRIQTFDGYLFKDFANQQEYDILSNYASELGVLI 465
>gi|358385986|gb|EHK23582.1| hypothetical protein TRIVIDRAFT_36912 [Trichoderma virens Gv29-8]
Length = 492
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 11/113 (9%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G VV+ETN+R+YAY+ S L +L LF+K+ + P+++ G ++ S+ A GITA+Q
Sbjct: 332 GSVVIETNYRLYAYTQSALQIAVLALFAKLNMRFPDMVAGRLSRASIRQAINFGITADQI 391
Query: 104 -----QNAHPRV-----ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEF 146
+AH ++ P +P V DQIRLW+ + R++ T + +F
Sbjct: 392 ISYLAAHAHEQMHRTAALTNKPVLPPTVVDQIRLWQLENERMKTTSGFLFRDF 444
>gi|392574410|gb|EIW67546.1| hypothetical protein TREMEDRAFT_33390 [Tremella mesenterica DSM
1558]
Length = 504
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 74/132 (56%), Gaps = 8/132 (6%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
+ + F+++ETN+++YAY+ ++L IL LF I+ Q NL+VG + + A E GI+A
Sbjct: 341 DDKKFLILETNYKIYAYTNNELEIAILNLFMDIKVQYRNLVVGKLDRAHVKAAMEKGISA 400
Query: 102 E------QQNAHPRVADRIPSIPE-NVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
Q +AHP++ P I + DQ+ LW+ + NR+ + + EF S+D++E
Sbjct: 401 YQIIAYLQSHAHPQMYSSPPPILHTTIVDQLHLWDKERNRLRTEESEMF-EFFSKDLYED 459
Query: 155 ACDYARDRSGLL 166
A+ GLL
Sbjct: 460 TEAEAKRYDGLL 471
>gi|340518979|gb|EGR49219.1| trancription factor tfb2-like protein [Trichoderma reesei QM6a]
Length = 480
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 11/113 (9%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G VV+ETN+R+YAY+ S L +L LF+K+ + P+++ G ++ S+ A GITA+Q
Sbjct: 320 GSVVIETNYRLYAYTQSALQIAVLALFAKLNMRFPDMVAGRLSRASIRQAINFGITADQI 379
Query: 104 -----QNAHPRV-----ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEF 146
+AH ++ P +P V DQIRLW+ + R++ T + +F
Sbjct: 380 ISYLSAHAHEQMHRTAALTNKPVLPPTVVDQIRLWQLENERMKTTSGFLFRDF 432
>gi|310799661|gb|EFQ34554.1| transcription factor tfb2 [Glomerella graminicola M1.001]
Length = 485
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 11/125 (8%)
Query: 46 FVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ-- 103
F + ETN+R+YAY + L +L LF K++ + +++ G T+ S+ NA E GITA+Q
Sbjct: 325 FRLSETNYRVYAYGQTPLQIAVLSLFCKLKLRFADMVSGRLTRNSIRNAVERGITADQII 384
Query: 104 ----QNAHPRV-----ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEA 154
+AH ++ A P +P V DQIRLW+ + R+ T + +F S ++
Sbjct: 385 SYLAAHAHEQMHRMAAARSRPILPPTVIDQIRLWQLETERMTTTSGFLFRDFDSPREYDD 444
Query: 155 ACDYA 159
YA
Sbjct: 445 IAGYA 449
>gi|403221352|dbj|BAM39485.1| transcription factor IIH subunit [Theileria orientalis strain
Shintoku]
Length = 634
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 65/110 (59%), Gaps = 16/110 (14%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
++V++NF++Y Y+ S L +L +++ + PNL+VG T+ES+ +AF++GIT+ +
Sbjct: 421 IIVQSNFKVYVYTASPLQISVLSHLCELQARTPNLVVGVLTRESVQSAFKSGITSNEIIR 480
Query: 104 -----------QNAHPRVADRIPS--IPENVCDQIRLWESDLNRVEMTPA 140
D + IPENVC Q+++WES+ +R+E++PA
Sbjct: 481 FLSPMKLSLSYAGTCNSFMDSFANYKIPENVCRQLKMWESERDRIELSPA 530
>gi|156086630|ref|XP_001610724.1| hypothetical protein [Babesia bovis T2Bo]
gi|154797977|gb|EDO07156.1| conserved hypothetical protein [Babesia bovis]
Length = 586
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 65/109 (59%), Gaps = 9/109 (8%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
N +VV++NF++YAY S L +L +++ + PNL++G T+ SL AF++GIT
Sbjct: 390 GNKGSKMVVQSNFKIYAYIPSALQMNVLNHICELQAKTPNLVIGVLTRSSLQTAFKSGIT 449
Query: 101 AEQ---------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
A+Q Q ++ + ++PENV Q+++WE++ NR+E+ A
Sbjct: 450 ADQLICFFESKGQYDDIQINRNVMNVPENVRRQLKMWEAERNRLELLNA 498
>gi|209880858|ref|XP_002141868.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209557474|gb|EEA07519.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
Length = 794
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 15/135 (11%)
Query: 40 ISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGI 99
ISN + ++V++NFR+Y Y+ S L +ILR +++ + PN+I G T+ L +A+ G+
Sbjct: 599 ISNLEAGIIVQSNFRVYCYTASPLQAKILRHLCQVKVRGPNIICGVLTRRGLLSAYSMGV 658
Query: 100 TAEQ------QNAHP-----RVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPS 148
A Q NAHP + D IP +V Q++LWE+D NR+E+ + ++ +
Sbjct: 659 KAYQILRFFISNAHPIILKKHITDGTSIIPISVETQLKLWENDHNRLEINKVSLFSDWGN 718
Query: 149 R----DVFEAACDYA 159
++F+ YA
Sbjct: 719 NKEDIELFKQTVTYA 733
>gi|358394641|gb|EHK44034.1| hypothetical protein TRIATDRAFT_222970 [Trichoderma atroviride IMI
206040]
Length = 491
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 11/111 (9%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
VV+ETN+R+YAY+ S L +L LF+K+ + P+++ G ++ S+ A GITA+Q
Sbjct: 333 VVIETNYRLYAYTQSALQIAVLALFAKLNMRFPDMVAGRLSRASIRQAINFGITADQIIS 392
Query: 104 ---QNAHPRV-----ADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEF 146
+AH ++ P +P V DQIRLW+ + R++ T + +F
Sbjct: 393 YLAAHAHEQMHRTAALTNKPVLPPTVVDQIRLWQLENERMKTTSGFLFRDF 443
>gi|308460920|ref|XP_003092758.1| hypothetical protein CRE_20976 [Caenorhabditis remanei]
gi|308252517|gb|EFO96469.1| hypothetical protein CRE_20976 [Caenorhabditis remanei]
Length = 128
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 9/93 (9%)
Query: 83 VGATTKESLNNAFENGITAEQ------QNAHPRV---ADRIPSIPENVCDQIRLWESDLN 133
VG T+ES+ A ++GITA Q NAHP+ + I +P V DQIRLWE +
Sbjct: 3 VGMITRESVRGALQHGITAAQIISFLRANAHPQCIATSGAINCLPITVADQIRLWEDERR 62
Query: 134 RVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
R+++ A+ Y F S D F+ CDYA++R LL
Sbjct: 63 RMDLKDAYIYSHFESEDEFQGVCDYAQERGILL 95
>gi|398406290|ref|XP_003854611.1| hypothetical protein MYCGRDRAFT_69317 [Zymoseptoria tritici IPO323]
gi|339474494|gb|EGP89587.1| hypothetical protein MYCGRDRAFT_69317 [Zymoseptoria tritici IPO323]
Length = 493
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 11/130 (8%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
SN +G++++ETN+R+YAY++S L IL LFS + + PNLI TK S+ +A IT
Sbjct: 317 SNEKGYIILETNYRLYAYTSSPLQISILSLFSTLHTRYPNLITAKITKSSIASAISQSIT 376
Query: 101 AEQ------QNAHPRVADR-----IPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSR 149
++Q +AHP + + P +P V DQIRLW+ + R+ Y +
Sbjct: 377 SDQIITYLSTHAHPVLRRQAAIMSAPILPPTVVDQIRLWQIEGERMTTWKGFYIRDVGGW 436
Query: 150 DVFEAACDYA 159
+ + A +YA
Sbjct: 437 EEYVKAVEYA 446
>gi|322711210|gb|EFZ02784.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Metarhizium anisopliae ARSEF 23]
Length = 540
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 26/151 (17%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ +G V+VETN+R+YAY+ S L +L LF K+ + P+++ G T+ S++ A GI+
Sbjct: 372 ADQKGSVIVETNYRIYAYTQSTLQIAVLALFCKLNMRFPDMVAGRVTRTSIHQAINFGIS 431
Query: 101 AEQ------QNAHPR------VADRIPSIPENVCDQIRLWESDLN----RVEMTPAHYYD 144
A+Q +AH + +A++ P +P V DQIRLW+ + R++ T +
Sbjct: 432 ADQIISYLAAHAHEQMHRSAALANK-PILPPTVVDQIRLWQLEWQLENERMKTTGGFLFR 490
Query: 145 EFPSRDVFEAACDYAR---------DRSGLL 166
+F F +A D+SG+
Sbjct: 491 DFEDHKEFLDTARFAEEIGVLVWRSDKSGMF 521
>gi|392594381|gb|EIW83705.1| transcription factor Tfb2 [Coniophora puteana RWD-64-598 SS2]
Length = 393
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 46/63 (73%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
+N GF+V+ETN+R+YAY+ + L +L LF ++Y+ PNL+VG T+ES+ A NGI+
Sbjct: 324 TNDHGFIVLETNYRVYAYTDNPLQIAVLNLFITLKYRFPNLVVGMLTRESVRRALGNGIS 383
Query: 101 AEQ 103
AEQ
Sbjct: 384 AEQ 386
>gi|387595518|gb|EIJ93142.1| hypothetical protein NEPG_02098 [Nematocida parisii ERTm1]
Length = 398
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
++ F+V+E+NFR+Y YS L I+ LFS + PN+IV ++S+ A +GITA
Sbjct: 248 AEKFLVLESNFRLYIYSNRPLDTFIISLFSIKSREFPNMIVAMINEDSIRQALMHGITAG 307
Query: 103 QQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF---EAACD 157
Q + + + I ENV +QIRLWE +NR+ ++ + F + F E+ C+
Sbjct: 308 QIRVYLN-QNSMYEINENVIEQIRLWEKRMNRIHSWESYIFSNFLNYKDFLLVESYCE 364
>gi|221061889|ref|XP_002262514.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
gi|193811664|emb|CAQ42392.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
Length = 943
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 78/147 (53%), Gaps = 17/147 (11%)
Query: 6 IARLPTSEDLEAYAIGQWELMDTNAQLWYIVREYISNSQGFVVVETNFRMYAYSTSKLHY 65
+ + + +L + A+ Q + M+ N L + ++V++NF++Y Y+ S L
Sbjct: 733 MDKTKLTHELASLALSQEKKMNGNNNL-----------EMGLIVQSNFKVYLYTNSTLKI 781
Query: 66 EILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ------QNAHPRVADRIPSIPE 119
IL +++ + PN++VG T+ S+ NA+ + ITA Q AHP ++ SIP
Sbjct: 782 NILSHLCELQARTPNMVVGILTRRSVLNAYNSDITANQIIKFLESYAHPGRSNFKSSIPV 841
Query: 120 NVCDQIRLWESDLNRVEMTPAHYYDEF 146
NV Q++LWES+ +R+ + A + F
Sbjct: 842 NVITQLKLWESERHRLTLDDAIVFKSF 868
>gi|47212202|emb|CAF90416.1| unnamed protein product [Tetraodon nigroviridis]
Length = 471
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 9/128 (7%)
Query: 22 QWELMDTNAQLWYIVREYISNSQGFVVVETNFRMYAYSTSKLHYEIL--RLFSKIE--YQ 77
Q+ L+DT +QLWY +Y+ +Q + V + + + + ++ R S E Y+
Sbjct: 224 QFLLLDTASQLWYFTLQYLKTAQDYSVEGMSDSLLTFLQHLREFGLVFQRKASGREMLYR 283
Query: 78 LPNLIVGATTKESLNNAFENGITAEQQN-----AHPRVADRIPSIPENVCDQIRLWESDL 132
PN++V T+ES+ A NGITA+Q+ + P + P +P + DQIRLWE +
Sbjct: 284 FPNVVVAQVTRESVQQAIANGITAQQRLTFDLWSSPTPLSQTPVLPPTITDQIRLWELER 343
Query: 133 NRVEMTPA 140
+R++ T A
Sbjct: 344 DRLQFTEA 351
>gi|399949686|gb|AFP65344.1| tfIIB-like protein [Chroomonas mesostigmatica CCMP1168]
Length = 464
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 10/100 (10%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE---- 102
+++E+NFR+Y Y + L ++L +FS+I YQLPNL VG T++S+ AF +G T+
Sbjct: 329 IIIESNFRIYVYKNAHLGNDLLLVFSEILYQLPNLFVGEITEKSILKAFNSGSTSRNIIG 388
Query: 103 --QQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
+ N HP P IP V +QI+ WE +++T +
Sbjct: 389 FLKNNLHPIC----PWIPSAVTNQIKAWEFQKTEIKITES 424
>gi|194388768|dbj|BAG60352.1| unnamed protein product [Homo sapiens]
Length = 386
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 6/76 (7%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q
Sbjct: 311 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQI 370
Query: 104 -----QNAHPRVADRI 114
AHP + ++
Sbjct: 371 IHFLRTRAHPVMLKQV 386
>gi|389586531|dbj|GAB69260.1| hypothetical protein PCYB_146880 [Plasmodium cynomolgi strain B]
Length = 913
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 63/106 (59%), Gaps = 6/106 (5%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
++V++NF++Y Y+ S L IL +++ + PN++VG T+ S+ NA+ + ITA Q
Sbjct: 733 LIVQSNFKVYLYTNSTLKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITANQIIK 792
Query: 104 ---QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEF 146
AHP ++ SIP NV Q++LWES+ +R+ + A + F
Sbjct: 793 FLESYAHPGRSNFKSSIPVNVITQLKLWESERHRLTLDDAIVFKSF 838
>gi|387592902|gb|EIJ87926.1| hypothetical protein NEQG_01998 [Nematocida parisii ERTm3]
Length = 398
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 43 SQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE 102
++ F+V+E+NFR+Y YS L I+ LFS + PN++V ++S+ A +GITA
Sbjct: 248 AEKFLVLESNFRLYIYSNRPLDTFIISLFSIKSREFPNMMVAMINEDSIRQALMHGITAG 307
Query: 103 QQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF---EAACD 157
Q + + + I ENV +QIRLWE +NR+ ++ + F + F E+ C+
Sbjct: 308 QIRVYLN-QNSMYEINENVIEQIRLWEKRMNRIHSWESYIFSNFLNYKDFLLVESYCE 364
>gi|323455511|gb|EGB11379.1| hypothetical protein AURANDRAFT_52511 [Aureococcus anophagefferens]
Length = 291
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 13/103 (12%)
Query: 47 VVVETNFRMYAYS-----TSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
V+V+TNF++ AY+ TS L L LF+++ +LPNL+VG +++++ + GI
Sbjct: 126 VIVQTNFQVLAYTDAGVNTSTLVLATLNLFAELTTRLPNLVVGTISRDAIKRCVDRGIRV 185
Query: 102 EQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMT 138
Q +AHP A + +P+NV DQ+ LW + NRV T
Sbjct: 186 PQIVKFLRAHAHP--AMKASGVPQNVTDQMALWAGEGNRVAFT 226
>gi|156095867|ref|XP_001613968.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148802842|gb|EDL44241.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 960
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
++V++NF++Y Y+ S L IL +++ + PN++VG T+ S+ NA+ + ITA Q
Sbjct: 780 LIVQSNFKVYLYTNSTLKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITANQIIK 839
Query: 104 ---QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEF 146
AHP + SIP NV Q++LWES+ +R+ + A + F
Sbjct: 840 FLESYAHPGRSTFKSSIPVNVITQLKLWESERHRLTLDDAIVFKSF 885
>gi|60603004|gb|AAX27959.1| unknown [Schistosoma japonicum]
Length = 100
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 47/74 (63%), Gaps = 6/74 (8%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S+ G++++ETNFR+YAY+ S L +L LFSKI + PNL+V T++S+ A GIT
Sbjct: 10 SSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIRARFPNLVVADITRDSVREALIRGIT 69
Query: 101 AEQ------QNAHP 108
A Q NAHP
Sbjct: 70 ANQILSFLTSNAHP 83
>gi|378754852|gb|EHY64880.1| hypothetical protein NERG_01936 [Nematocida sp. 1 ERTm2]
Length = 396
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+ F+ +E+NFR+Y YS L I+ LFS + PN+IV ++S+ A GITA Q
Sbjct: 247 EKFLTLESNFRLYIYSNRPLDVFIISLFSIKIREFPNMIVAMINEDSIRQALTYGITAGQ 306
Query: 104 QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF---EAACD 157
+ + + I ENV +QIRLWE +NR+ ++ + F + F E+ C+
Sbjct: 307 IRVYLN-QNSMHKINENVLEQIRLWEKRMNRIHAWESYIFSNFLNYKDFLLVESYCE 362
>gi|124806778|ref|XP_001350829.1| transcription factor Tfb2, putative [Plasmodium falciparum 3D7]
gi|23496958|gb|AAN36509.1| transcription factor Tfb2, putative [Plasmodium falciparum 3D7]
Length = 945
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 63/106 (59%), Gaps = 6/106 (5%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
++V++NF++Y Y++S L IL +++ + PN++VG T+ S+ NA+ + ITA Q
Sbjct: 766 LIVQSNFKVYLYTSSLLKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITANQIIK 825
Query: 104 ---QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEF 146
+HP + SIP NV Q++LWES+ +R+ + A + F
Sbjct: 826 FLESYSHPGKNNFKSSIPMNVITQLKLWESERHRLTLEDAIVFKSF 871
>gi|238570605|ref|XP_002386883.1| hypothetical protein MPER_14683 [Moniliophthora perniciosa FA553]
gi|215440101|gb|EEB87813.1| hypothetical protein MPER_14683 [Moniliophthora perniciosa FA553]
Length = 69
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 44 QGFVVVETNFRMYAYSTS-----KLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENG 98
QGF+V+ETN+R+YAY+ S L IL LF ++Y+ PNL+VG+ T+ES+ A NG
Sbjct: 5 QGFIVLETNYRVYAYTGSFSLHNPLQTAILHLFVSLKYRFPNLVVGSITRESVKKALSNG 64
Query: 99 ITAEQ 103
I+A+Q
Sbjct: 65 ISADQ 69
>gi|336270172|ref|XP_003349845.1| hypothetical protein SMAC_00733 [Sordaria macrospora k-hell]
gi|380095234|emb|CCC06707.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 496
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 18/132 (13%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S+G +++ETN+R+YAY+TS L +L LF ++ + PN++ A A GIT
Sbjct: 339 GTSKG-IIIETNYRIYAYTTSPLQIAVLALFCQLNMRFPNMVSAAL------RAIGFGIT 391
Query: 101 AEQ------QNAHPRVADRI-----PSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSR 149
A+Q +AH ++ +P V DQIRLW+ + R++ T + +F S
Sbjct: 392 ADQIISYLHAHAHQQMVREATVTGKTVLPPTVVDQIRLWQLENERMQTTAGFLFKDFEST 451
Query: 150 DVFEAACDYARD 161
+ + A YA +
Sbjct: 452 EEYAALSRYAEE 463
>gi|399219100|emb|CCF75987.1| unnamed protein product [Babesia microti strain RI]
Length = 612
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 61/106 (57%), Gaps = 10/106 (9%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
N + ++V++NF++Y Y+ S L +L +++ + PNL++G T+ S + AF GITA
Sbjct: 427 NLESGIIVQSNFKVYVYTASPLQINVLAHLCELQSRTPNLVIGVLTRASAHAAFRAGITA 486
Query: 102 EQ------QNAHPRVADRIPS----IPENVCDQIRLWESDLNRVEM 137
+Q ++HP + + +P NV Q+ +WE++ NR+ +
Sbjct: 487 KQICQFLETHSHPILLQNVREGGSYLPNNVVTQLNMWEAERNRISL 532
>gi|164660182|ref|XP_001731214.1| hypothetical protein MGL_1397 [Malassezia globosa CBS 7966]
gi|159105114|gb|EDP44000.1| hypothetical protein MGL_1397 [Malassezia globosa CBS 7966]
Length = 231
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 6/73 (8%)
Query: 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
QG++++ETN+R+YAY+ + L IL LF ++ +LPNL++G T+ S+ +A GITA+Q
Sbjct: 147 QGYLILETNYRVYAYTANLLRIAILNLFVTLKSRLPNLVIGQLTRHSVKSALNKGITADQ 206
Query: 104 ------QNAHPRV 110
+AHP++
Sbjct: 207 IITYLTHHAHPQM 219
>gi|429854513|gb|ELA29524.1| tfiih and nucleotide excision repair factor 3 complexes subunit
[Colletotrichum gloeosporioides Nara gc5]
Length = 509
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 11/99 (11%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G ++VETN+R+YAY + L +L LF K++ + +++ G T+ S+ NA E GITA+Q
Sbjct: 371 GSIIVETNYRVYAYGQTPLQIAVLSLFCKLKLRFADMVSGRLTRNSIRNAVERGITADQI 430
Query: 104 -----QNAHPRV-----ADRIPSIPENVCDQIRLWESDL 132
+AH ++ P +P V DQIRL D+
Sbjct: 431 ISYLASHAHEQMHRFAAVRNKPVLPPTVIDQIRLEYEDI 469
>gi|432098035|gb|ELK27922.1| General transcription factor IIH subunit 4 [Myotis davidii]
Length = 377
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 28/113 (24%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
++ GF+VVETN+++YAY+ S+L ++ LFS++ Y+ PN++V T
Sbjct: 250 AHQPGFIVVETNYQLYAYTESELQIALIALFSEMLYRFPNMVVAQT-------------- 295
Query: 101 AEQQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 153
P +P + DQIRLWE + +R+ T Y++F S+ F+
Sbjct: 296 --------------PVLPPTITDQIRLWELERDRLLFTEGVLYNQFLSQVDFD 334
>gi|412992644|emb|CCO18624.1| predicted protein [Bathycoccus prasinos]
Length = 464
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 45/59 (76%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
G ++VETNFR+YAY+ S+L E+LRLF++ +Y+LPN VG T++S+ +A GI+ +Q
Sbjct: 401 GHIIVETNFRVYAYTHSELETEVLRLFTRPDYKLPNAYVGMITRDSILDAMRAGISPDQ 459
>gi|403348380|gb|EJY73625.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Oxytricha trifallax]
Length = 532
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 41 SNSQG-FVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGI 99
S SQ F++VETNF++YAY++S L+ +LR F ++E PNL+VG T++SL AF+ GI
Sbjct: 317 SQSQDKFLIVETNFKVYAYTSSDLYRALLRQFIRVECIFPNLVVGTLTRKSLQKAFQRGI 376
Query: 100 TAEQ 103
++ Q
Sbjct: 377 SSGQ 380
>gi|365758016|gb|EHM99881.1| Tfb2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 419
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 6/72 (8%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G ++VETNF++Y+YS S L +L LF ++ + N+++G T+ES+ NA NGITA+Q
Sbjct: 337 GSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRNALTNGITADQI 396
Query: 104 -----QNAHPRV 110
+AHP++
Sbjct: 397 IAYLETHAHPQM 408
>gi|70950974|ref|XP_744765.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56524852|emb|CAH80923.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 922
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
+++++NF++Y Y++S L IL +++ + PN++VG T+ S+ NA+ + ITA+Q
Sbjct: 742 LIIQSNFKVYLYTSSILKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITADQIIK 801
Query: 104 ---QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEF 146
+HP IP NV Q++LWE++ +R+ + + + F
Sbjct: 802 FLESYSHPGKTKLKSIIPINVITQLKLWEAERHRLTLEDSIVFKNF 847
>gi|82704497|ref|XP_726580.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23482045|gb|EAA18145.1| Drosophila melanogaster LD30622p-related [Plasmodium yoelii yoelii]
Length = 926
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
+++++NF++Y Y++S L IL +++ + PN++VG T+ S+ NA+ + ITA+Q
Sbjct: 746 LIIQSNFKVYLYTSSILKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITADQIIK 805
Query: 104 ---QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEF 146
+HP IP NV Q++LWE++ +R+ + + + F
Sbjct: 806 FLESYSHPGKTKLKSIIPINVITQLKLWEAERHRLTLEDSIVFKNF 851
>gi|428181353|gb|EKX50217.1| TFB2 transcription factor B2 nucleotide excision repair [Guillardia
theta CCMP2712]
Length = 463
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 67 ILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQQNAHPRVADRIPSIPENVCDQIR 126
ILRLF++ Y+ P++I+ T+ES+ NA I + +AHP+ + P +PE V DQI
Sbjct: 324 ILRLFTRPIYKFPHMIIAVITRESIRNAL--IIEYLRMHAHPQCLENWPIVPEVVTDQIC 381
Query: 127 LWESDLNRVEMTPAHYYDEFPSRDVFEAACDYAR 160
WE + R+ PA Y F S + A AR
Sbjct: 382 FWEQERCRIRAEPAVAYHNFFSGEAHRACEKEAR 415
>gi|68070707|ref|XP_677265.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56497310|emb|CAH94094.1| conserved hypothetical protein [Plasmodium berghei]
Length = 929
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ--- 103
+++++NF++Y Y++S L IL +++ + PN++VG T+ S+ NA+ + ITA+Q
Sbjct: 749 LIIQSNFKVYLYTSSILKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITADQIIK 808
Query: 104 ---QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEF 146
+HP IP NV Q++LWE++ +R+ + + + F
Sbjct: 809 FLESYSHPGKTKLKSIIPINVITQLKLWEAERHRLILEDSIVFKNF 854
>gi|67483069|ref|XP_656826.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56474050|gb|EAL51440.1| hypothetical protein EHI_192400 [Entamoeba histolytica HM-1:IMSS]
gi|449706224|gb|EMD46115.1| tfiih basal transcription factor complex p52 subunit, putative
[Entamoeba histolytica KU27]
Length = 484
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
Query: 48 VVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQQNAH 107
+ E N+ +Y Y+ S+ ++ RLF + +QL NL VG +S+ AF GIT+E
Sbjct: 290 ITEINYSVYIYTESQFQVDLYRLFIRKNFQLANLWVGKLNHQSVTEAFAKGITSEM---- 345
Query: 108 PRVADRIPSIPENVCDQIRLWESDLNRVE---MTPAHYYDEFPSRDVF 152
+ P++P + QI LW+ ++NR + + +YD+ R +F
Sbjct: 346 -LINFLQPNLPRTIQKQIDLWKKEINRFKEEHVVRYRFYDDAIGRQLF 392
>gi|269861689|ref|XP_002650538.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
gi|220065990|gb|EED43520.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
Length = 291
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 34 YIVREYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNN 93
YI+ + + Q F+ +ETNF++Y+Y+ + IL LFS I +++P +I ++ + N
Sbjct: 144 YILYKNNTEIQKFIYLETNFKLYSYTNNLCDRAILDLFSNIVFEVPGMIKSILDEKKIMN 203
Query: 94 AFENGITAEQQNAHPRVADRIPSIPENVCDQ----IRLWESDLNRVEMTPAHYYDEFPSR 149
+ GI +Q + + I N CDQ I +W+ NR+ + Y +F +
Sbjct: 204 TLDRGIKIQQ------IVEYIRRHTINNCDQILHMIEIWDKQRNRINKQIGYLYSDFTNY 257
Query: 150 DVFEAACDYARDRSGLL 166
+ + + + + + LL
Sbjct: 258 NEYRSVLEQIKTDTDLL 274
>gi|167395228|ref|XP_001741280.1| TFIIH basal transcription factor complex p52 subunit [Entamoeba
dispar SAW760]
gi|165894177|gb|EDR22239.1| TFIIH basal transcription factor complex p52 subunit, putative
[Entamoeba dispar SAW760]
Length = 489
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
Query: 48 VVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQQNAH 107
+ E N+ +Y Y+ S+ ++ RLF + +QL NL VG +S+ AF GIT+E
Sbjct: 290 ITEINYSVYIYTESQFQVDLYRLFIRKNFQLANLWVGKLNHQSVTEAFAKGITSEM---- 345
Query: 108 PRVADRIPSIPENVCDQIRLWESDLNRVE---MTPAHYYDEFPSRDVF 152
+ P++P + QI LW+ ++NR + + +YD+ R +F
Sbjct: 346 -LINFLQPNLPRTIQKQIDLWKKEINRFKEEHVVRYKFYDDAIGRQLF 392
>gi|160331881|ref|XP_001712647.1| hypothetical protein HAN_3g523 [Hemiselmis andersenii]
gi|159766096|gb|ABW98322.1| hypothetical protein HAN_3g523 [Hemiselmis andersenii]
Length = 432
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE---- 102
+++E+N+R+Y Y + + ++ +FS+I Y LPN VG T+ S++ A ++GIT +
Sbjct: 300 IIIESNYRIYVYQKNSNNNQLFLIFSEILYILPNFFVGEITETSISRALKSGITIQNILG 359
Query: 103 --QQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEM 137
++N H SIP + +Q RLWE ++++
Sbjct: 360 FIRENLHCVCR----SIPSTILNQFRLWEFQKKKIKI 392
>gi|302831319|ref|XP_002947225.1| hypothetical protein VOLCADRAFT_35893 [Volvox carteri f.
nagariensis]
gi|300267632|gb|EFJ51815.1| hypothetical protein VOLCADRAFT_35893 [Volvox carteri f.
nagariensis]
Length = 90
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 107 HPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
HP +A R P +PE V DQIRLWE+ +NR+ Y+ SR++FE A ++R LL
Sbjct: 16 HPSIASRTPVVPEVVSDQIRLWEASMNRLRADSVVLYENLASRELFERALAFSRSSGTLL 75
>gi|269860316|ref|XP_002649880.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
gi|220066720|gb|EED44193.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
Length = 369
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 34 YIVREYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNN 93
YI+ + + Q F+ +ETNF++Y+Y+ + IL LFS I +++P +I ++ + N
Sbjct: 222 YILYKNNTEIQKFIYLETNFKLYSYTNNLCDRAILDLFSNIVFEVPGMIKSILDEKKIMN 281
Query: 94 AFENGITAEQQNAHPRVADRIPSIPENVCDQ----IRLWESDLNRVEMTPAHYYDEFPSR 149
+ GI +Q + + I N CDQ I +W+ NR+ + Y +F +
Sbjct: 282 TLDRGIKIQQ------IVEYIRRHTINNCDQILHMIEIWDKQRNRINKQIGYLYSDFTNY 335
Query: 150 DVFEAACDYARDRSGLL 166
+ + + + + + LL
Sbjct: 336 NEYRSVLEQIKTDTDLL 352
>gi|296084771|emb|CBI25914.3| unnamed protein product [Vitis vinifera]
Length = 225
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 40/93 (43%), Gaps = 49/93 (52%)
Query: 1 MPSGIIARLPTSEDLEAYAIGQWE------------------------------------ 24
MPS I RLP+ +DLEAYA+GQWE
Sbjct: 94 MPSNITVRLPSLDDLEAYALGQWECFLLQLISSTQTEKLTNFSSSMMKVFQRGLLTQREK 153
Query: 25 -------------LMDTNAQLWYIVREYISNSQ 44
LMDTNAQLWYI+REYISNS+
Sbjct: 154 EAPRLTESGFQFLLMDTNAQLWYIMREYISNSE 186
>gi|359497414|ref|XP_003635508.1| PREDICTED: general transcription factor IIH subunit 4-like, partial
[Vitis vinifera]
Length = 209
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 40/93 (43%), Gaps = 49/93 (52%)
Query: 1 MPSGIIARLPTSEDLEAYAIGQWE------------------------------------ 24
MPS I RLP+ +DLEAYA+GQWE
Sbjct: 94 MPSNITVRLPSLDDLEAYALGQWECFLLQLISSTQTEKLTNFSSSMMKVFQRGLLTQREK 153
Query: 25 -------------LMDTNAQLWYIVREYISNSQ 44
LMDTNAQLWYI+REYISNS+
Sbjct: 154 EAPRLTESGFQFLLMDTNAQLWYIMREYISNSE 186
>gi|440295536|gb|ELP88449.1| TFIIH basal transcription factor complex p52 subunit, putative
[Entamoeba invadens IP1]
Length = 531
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 48 VVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQQNAH 107
+ ETN+ +Y Y+ S ++ LF + QL NL VG T +++ AF GIT E
Sbjct: 291 ITETNYTVYIYTESFFQVKLYSLFIRQNLQLTNLCVGRITYDTVTEAFLKGITNEM---- 346
Query: 108 PRVADRIPSIPENVCDQIRLWESDLNRVE 136
V P++P+N+ QI LW+ +LNR++
Sbjct: 347 -LVNFLQPNLPKNIQAQIDLWKRELNRLK 374
>gi|449521313|ref|XP_004167674.1| PREDICTED: RNA polymerase II transcription factor B subunit 2-like,
partial [Cucumis sativus]
Length = 296
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 39/93 (41%), Gaps = 49/93 (52%)
Query: 1 MPSGIIARLPTSEDLEAYAIGQWE------------------------------------ 24
MPS I RLP+ EDLEAYA+ QWE
Sbjct: 125 MPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLSQRDK 184
Query: 25 -------------LMDTNAQLWYIVREYISNSQ 44
LM+TNAQLWYI+REYISN++
Sbjct: 185 EAPRLTESGFQFLLMETNAQLWYIIREYISNAE 217
>gi|167535774|ref|XP_001749560.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771952|gb|EDQ85611.1| predicted protein [Monosiga brevicollis MX1]
Length = 417
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
GF++ ETNF +YAY+ S + +L F+ + Y+LP + T+ S+ A GITA+Q
Sbjct: 292 GFLLAETNFHVYAYTDSAVKVALLSKFATLTYRLPIMTTAIITRTSVRRALSQGITADQ 350
>gi|330038479|ref|XP_003239608.1| TATA binding protein of transcription factor IIB-like protein
[Cryptomonas paramecium]
gi|327206532|gb|AEA38710.1| TATA binding protein of transcription factor IIB-like protein
[Cryptomonas paramecium]
Length = 467
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQQNA 106
+++E+N+R+YAY+ + +IL F + Y LP L VG K S++ A GI A +N
Sbjct: 319 MIIESNYRVYAYNNNTFLNKILIQFCDLIYNLPGLFVGEINKTSIHKAIHKGINA--KNI 376
Query: 107 HPRVADRIPSIPENVC----DQIRLWE 129
+ I +N C +QIR+WE
Sbjct: 377 ISFILKNSHYIHQNSCNPIINQIRIWE 403
>gi|340508252|gb|EGR33999.1| hypothetical protein IMG5_027880 [Ichthyophthirius multifiliis]
Length = 454
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 10/66 (15%)
Query: 47 VVVETNFRMYAY----------STSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFE 96
++VETNF +YAY S SK ++L+ FSKI Y P+LIV T+ + AF
Sbjct: 306 IIVETNFNLYAYLDYNPQNKTFSESKYIRDLLKKFSKIHYTFPHLIVAQLTEAKMKQAFN 365
Query: 97 NGITAE 102
GIT++
Sbjct: 366 QGITSK 371
>gi|380476902|emb|CCF44454.1| RNA polymerase II transcription factor B subunit 2 [Colletotrichum
higginsianum]
Length = 126
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 81 LIVGATTKESLNNAFENGITAEQ----------QNAHPRVADRI-PSIPENVCDQIRLWE 129
++ G T+ S+ NA E GITA+Q + H A R P +P V DQIRLW+
Sbjct: 1 MVSGRLTRNSIRNAVERGITADQIISYLAAHAHEQMHRMAAVRSRPVLPPTVVDQIRLWQ 60
Query: 130 SDLNRVEMTPAHYYDEFPSRDVFEAACDYA 159
+ R+ T + +F S +E YA
Sbjct: 61 LETERMTTTSGFLFRDFDSPKEYEVIAGYA 90
>gi|294950275|ref|XP_002786548.1| tfiih, polypeptide, putative [Perkinsus marinus ATCC 50983]
gi|239900840|gb|EER18344.1| tfiih, polypeptide, putative [Perkinsus marinus ATCC 50983]
Length = 580
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 40/141 (28%)
Query: 40 ISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQL-------PN---LIVGATTKE 89
I+N + V++NF + AY+TS L +L F +++ QL PN ++G T+
Sbjct: 388 ITNKSCRLFVDSNFAVTAYTTSSLDLRLLGTFVQLQRQLGDGREYDPNDFGCVLGTLTQS 447
Query: 90 SLNNAFENGITAE------QQNAHPRVADR----------------------IPSIPENV 121
S+ +A + G+T+E + + PR A I IP NV
Sbjct: 448 SVQSAAQRGVTSEYIISYLKSHVDPRAAHMGSQGGRSSAATANTGAARGEKFIDGIPANV 507
Query: 122 CDQIRLWESDL--NRVEMTPA 140
QI LWE + NR+ + P
Sbjct: 508 VTQITLWEREAIHNRLRIDPG 528
>gi|123488965|ref|XP_001325283.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121908180|gb|EAY13060.1| hypothetical protein TVAG_212420 [Trichomonas vaginalis G3]
Length = 460
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 28 TNAQLWYIVREYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATT 87
T + L + + I ++G+++++TNF++ A+ S LH +L+ F+ + Y+ P +
Sbjct: 277 TKSILNFFGKSNIFQTEGWMLIDTNFKITAFPKSPLHTALLKKFANVTYEFPGFASAFIS 336
Query: 88 KESLNNAFENGITAEQQNAHPR--VADRIPS--IPENVCDQIRLWESDLNRVEMT 138
S A G T + + ++ +I S IP V Q +W R+ +T
Sbjct: 337 PNSFREALNQGTTLDDIIGFLKSNLSHKIGSGQIPSAVMKQFYVWRDQRERLTVT 391
>gi|401419872|ref|XP_003874425.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490661|emb|CBZ25923.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 559
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 56/144 (38%), Gaps = 55/144 (38%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLP-NLIVGATTKESLNNAFENGITAEQ-- 103
++ ETNFR+YAY+ IL F+++E + NL T++S A GITA Q
Sbjct: 359 IITETNFRLYAYTDDADLLNILNQFAELEEIVNGNLHCYRVTRDSFAAAMRKGITAAQVL 418
Query: 104 ----QNAHPRVADR-----------IPS-------------------------------- 116
AHP + R PS
Sbjct: 419 RFLSLRAHPSMLRRHGEREESGDTAAPSSAGGVSSSLTFSAPHRRGAVPGTCGGTTAIDA 478
Query: 117 -----IPENVCDQIRLWESDLNRV 135
+P++ CDQ+R+WES+ +RV
Sbjct: 479 VSTIVVPQSFCDQMRMWESECHRV 502
>gi|397564488|gb|EJK44232.1| hypothetical protein THAOC_37249 [Thalassiosira oceanica]
Length = 971
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 77 QLPNLIVGATTKESLNNAFENGITAE------QQNAHPRV-ADRIPSIPENVCDQIRLWE 129
+LPN++ T++S+ +AF G+TA+ Q +AHP + + P P NV DQI LW+
Sbjct: 434 RLPNVVFFHLTRDSIKSAFRLGVTADQILRFLQVHAHPMMRSGNQPMPPANVRDQILLWD 493
Query: 130 SDLNRVEM 137
+ RV M
Sbjct: 494 RERRRVVM 501
>gi|162605818|ref|XP_001713424.1| hypothetical protein GTHECHR3089 [Guillardia theta]
gi|13794356|gb|AAK39733.1|AF083031_90 hypothetical protein [Guillardia theta]
Length = 180
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAE---- 102
+++E NFR+Y + + SK Y LP VG + F+ G+T++
Sbjct: 45 IIIEVNFRIYIFKYFDFSNSFFKFISKKIYSLPYFYVGEINENYSRRLFQLGVTSDNILK 104
Query: 103 --QQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 150
++N H ++IPS E D++R+WE + +++ F R+
Sbjct: 105 FIKKNLH-YTCNKIPSTFE---DRLRIWE-----ISFKKKYFFGGFLMRN 145
>gi|154345556|ref|XP_001568715.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066057|emb|CAM43844.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 561
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 53/143 (37%), Gaps = 54/143 (37%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQL-PNLIVGATTKESLNNAFENGITAEQ-- 103
++ ETNFR+YAY+ IL F+++E + NL T++S A GITA Q
Sbjct: 362 IITETNFRLYAYTEDSDLLNILHQFAELEEVVNGNLHCYRVTRDSFAAAMRKGITATQVL 421
Query: 104 ----QNAHPRVADR------------------IPS------------------------- 116
AHP + R PS
Sbjct: 422 RFLSLRAHPSMLRRYGEKEENGDTKSPSPAGGAPSSTFSAPPRRAAVAGTRGSTTFIDAV 481
Query: 117 ----IPENVCDQIRLWESDLNRV 135
+P + CDQ+R+WE + RV
Sbjct: 482 TTLVVPHSFCDQLRMWERECRRV 504
>gi|146103275|ref|XP_001469523.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134073893|emb|CAM72632.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 557
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 53/144 (36%), Gaps = 55/144 (38%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQL-PNLIVGATTKESLNNAFENGITAEQ-- 103
++ ETNFR+YAY+ IL F+K+E + NL T++S +A GITA Q
Sbjct: 357 IITETNFRLYAYTDDADLLNILNQFAKLEEIVNGNLHCYRVTRDSFASAMRKGITAAQVL 416
Query: 104 ----QNAHPRVADR---------------------------------------------- 113
AHP + R
Sbjct: 417 RFLSLRAHPSMLRRHGEREENGDTTSPSSAGGASSSFTFSASPRRRAVAGTCGSTTSIDA 476
Query: 114 --IPSIPENVCDQIRLWESDLNRV 135
+P++ CDQ+ +WES+ RV
Sbjct: 477 VSTLVVPQSFCDQMHMWESECRRV 500
>gi|398024082|ref|XP_003865202.1| hypothetical protein, conserved [Leishmania donovani]
gi|322503439|emb|CBZ38524.1| hypothetical protein, conserved [Leishmania donovani]
Length = 557
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 53/144 (36%), Gaps = 55/144 (38%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQL-PNLIVGATTKESLNNAFENGITAEQ-- 103
++ ETNFR+YAY+ IL F+K+E + NL T++S +A GITA Q
Sbjct: 357 IITETNFRLYAYTDDADLLNILNQFAKLEEIVNGNLHCYRVTRDSFASAMRKGITAAQVL 416
Query: 104 ----QNAHPRVADR---------------------------------------------- 113
AHP + R
Sbjct: 417 RFLSLRAHPSMLRRHGEREENGDTTSPSSAGGASSSFTFSASPRRRAVAGTCGSTTSIDA 476
Query: 114 --IPSIPENVCDQIRLWESDLNRV 135
+P++ CDQ+ +WES+ RV
Sbjct: 477 VSTLVVPQSFCDQMHMWESECRRV 500
>gi|340057132|emb|CCC51474.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 502
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 40/127 (31%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVG-ATTKESLNNAFENGITAE--- 102
++ ETNFR+YAY+ +K IL F+ E ++ +IV T+ S A GI A+
Sbjct: 318 IITETNFRLYAYTRNKHLLAILEQFAIKEAEVDGMIVCFRVTRASFAAALRKGIGAQHIV 377
Query: 103 --------------QQNAHPR--------------------VADRIPSIPENVCDQIRLW 128
Q PR AD+I IP + CDQ+ W
Sbjct: 378 QFLRVKAHSSMLKHQLTCDPRDSAGLAATSSRVTPTDTPWTHADKI--IPRSFCDQLFTW 435
Query: 129 ESDLNRV 135
E + R+
Sbjct: 436 ERECRRL 442
>gi|342184190|emb|CCC93671.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 499
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 35/124 (28%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVG-ATTKESLNNAFENGITAEQ-- 103
++ ETNFR+YAY+ + IL F+ E + +IV T+ S A GI A+
Sbjct: 317 IITETNFRLYAYTRNPDLLGILDQFAVKEIDIDGIIVCYRVTRSSFALALRKGIDAKHIL 376
Query: 104 ----QNAHPR-----------VADRI----------PS-------IPENVCDQIRLWESD 131
AHP V+D + PS IP++ CDQ+ WE +
Sbjct: 377 QFLTLKAHPSMVRKDGGASRDVSDNLALNSVAGFGKPSEVHQSTVIPQSFCDQLMTWERE 436
Query: 132 LNRV 135
R+
Sbjct: 437 CRRL 440
>gi|157876614|ref|XP_001686652.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68129727|emb|CAJ09033.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 626
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 53/144 (36%), Gaps = 55/144 (38%)
Query: 47 VVVETNFRMYAYSTSKLHYEILRLFSKIEYQLP-NLIVGATTKESLNNAFENGITAEQ-- 103
++ ETNFR++AY+ IL F+++E + NL T+ S A GITA Q
Sbjct: 426 IITETNFRLFAYTNDADLLNILNQFAELEEIVNGNLHCYRVTRASFAAAMRKGITAAQVL 485
Query: 104 ----QNAHPRVADR---------------------------IPS---------------- 116
AHP + R P
Sbjct: 486 RFLSLRAHPSMLRRHGEREENGDTASPSSAGGASSSFTFSASPRRGAVAGTCGSTTSIDA 545
Query: 117 -----IPENVCDQIRLWESDLNRV 135
+P++ CDQ+R+WES+ RV
Sbjct: 546 VSTLVVPQSFCDQMRMWESECRRV 569
>gi|47194594|emb|CAF93785.1| unnamed protein product [Tetraodon nigroviridis]
Length = 123
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 108 PRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYAR 160
P + P +P + DQIRLWE + +R++ T Y++F S+ FE D A+
Sbjct: 15 PTPLTQTPVLPPTITDQIRLWELERDRLQFTEGVLYNQFLSQTDFEVLRDRAQ 67
>gi|146161819|ref|XP_001033510.2| hypothetical protein TTHERM_00313290 [Tetrahymena thermophila]
gi|146142827|gb|EAR85847.2| hypothetical protein TTHERM_00313290 [Tetrahymena thermophila
SB210]
Length = 484
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 17/72 (23%)
Query: 47 VVVETNFRMYAY-----------STSKL-----HYE-ILRLFSKIEYQLPNLIVGATTKE 89
+ +ETNF +YAY S L H E +L F + Y+ P+LIVG +++
Sbjct: 322 ITIETNFNVYAYIDQEDPKEIKDSKDTLKDQTEHIEKLLASFCDLHYKFPHLIVGQLSEQ 381
Query: 90 SLNNAFENGITA 101
+ F+NG+TA
Sbjct: 382 KTKDQFKNGLTA 393
>gi|150863777|ref|XP_001382371.2| hypothetical protein PICST_55332 [Scheffersomyces stipitis CBS
6054]
gi|149385033|gb|ABN64342.2| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 430
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 4 GIIARLPTSEDLEAYAIGQWELMDTNAQLWYIVREYISNSQGFVVVETNFRMYAYSTSKL 63
G + P S+ L+ + W T+ L++ ++ I + GFV V N +Y Y SKL
Sbjct: 160 GSLTATPISDSLDVESANGWGFTTTSGSLFHNPKQPIVKNYGFVDVNENLDLYKYQVSKL 219
Query: 64 HYEIL 68
+L
Sbjct: 220 GVTVL 224
>gi|238055347|sp|A3LNJ3.3|CLP1_PICST RecName: Full=Protein CLP1
Length = 453
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 4 GIIARLPTSEDLEAYAIGQWELMDTNAQLWYIVREYISNSQGFVVVETNFRMYAYSTSKL 63
G + P S+ L+ + W T+ L++ ++ I + GFV V N +Y Y SKL
Sbjct: 183 GSLTATPISDSLDVESANGWGFTTTSGSLFHNPKQPIVKNYGFVDVNENLDLYKYQVSKL 242
Query: 64 HYEIL 68
+L
Sbjct: 243 GVTVL 247
>gi|145509120|ref|XP_001440504.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407721|emb|CAK73107.1| unnamed protein product [Paramecium tetraurelia]
Length = 400
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 13 EDLEAYAIGQWE--LMDTNAQLWYIVREYISNSQGF---VVVETNFRMYAYSTSKLHYE- 66
+DL+ + + ++ M W + E S S G ++VE NFR+YAY S E
Sbjct: 233 KDLQEFGLTHYQDQQMRITFLFWNFLYEPPSVSIGIQCNIIVEANFRIYAYLNSGDQQEE 292
Query: 67 -----ILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ 103
+L LFS+I+ + LI+ ++ S+ A + A+Q
Sbjct: 293 EILCNLLNLFSEIKKRFKILIIADLSESSIRKAVRENLQAKQ 334
>gi|197107449|pdb|3DOM|A Chain A, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
gi|197107451|pdb|3DOM|C Chain C, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
Length = 108
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 108 PRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
P + + +P V DQIRLW+ +L+RV Y +F + + YA+D LL
Sbjct: 19 PNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLL 77
>gi|324515605|gb|ADY46257.1| General transcription factor IIH subunit 4 [Ascaris suum]
Length = 245
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQ 77
G+++VETN+R+YAY+ S L IL F+++ Y+
Sbjct: 211 GYIIVETNYRVYAYTDSSLQLAILSTFTEMLYR 243
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,662,976,144
Number of Sequences: 23463169
Number of extensions: 104098706
Number of successful extensions: 223180
Number of sequences better than 100.0: 387
Number of HSP's better than 100.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 222161
Number of HSP's gapped (non-prelim): 695
length of query: 166
length of database: 8,064,228,071
effective HSP length: 127
effective length of query: 39
effective length of database: 9,379,372,904
effective search space: 365795543256
effective search space used: 365795543256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)