BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036799
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DOM|A Chain A, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
pdb|3DOM|C Chain C, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
Length = 108
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 108 PRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
P + + +P V DQIRLW+ +L+RV Y +F + + YA+D LL
Sbjct: 19 PNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLL 77
>pdb|3DGP|A Chain A, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
Length = 80
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 120 NVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
V DQIRLW+ +L+RV Y +F + + YA+D LL
Sbjct: 3 TVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLL 49
>pdb|2OIK|A Chain A, Crystal Structure Of A Histidine Triad (Hit) Protein
(Mfla_2506) From Methylobacillus Flagellatus Kt At 1.65
A Resolution
pdb|2OIK|B Chain B, Crystal Structure Of A Histidine Triad (Hit) Protein
(Mfla_2506) From Methylobacillus Flagellatus Kt At 1.65
A Resolution
pdb|2OIK|C Chain C, Crystal Structure Of A Histidine Triad (Hit) Protein
(Mfla_2506) From Methylobacillus Flagellatus Kt At 1.65
A Resolution
pdb|2OIK|D Chain D, Crystal Structure Of A Histidine Triad (Hit) Protein
(Mfla_2506) From Methylobacillus Flagellatus Kt At 1.65
A Resolution
Length = 154
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 50 ETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQQNA 106
+ N T +H+ ++ F + + PN + G T +ESL A + G T + A
Sbjct: 84 KINLASLGNXTPHVHWHVIPRFKR-DRHFPNSVWGETKRESLPQALDQGSTTALKKA 139
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 80 NLIVGATTKESLNNAFENGITAEQQNAHPRVADRIPSIPENVCDQIRLWESDL 132
+ + G E L+N+F GI +++ R+P+ ENV +++ E DL
Sbjct: 177 HFLAGEPRGEVLDNSFTGGICKTVKSSRTSNPYRVPANLENVGFEVQTAEDDL 229
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 27.7 bits (60), Expect = 3.2, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 58 YSTSKLHYEILRLFSKIEY-------QLPNLIVGATTKESLNNAFENGITAEQQNAH-PR 109
Y +L + L+ + +E QLP+ + +SLN A GI+A Q A R
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNXTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539
Query: 110 VADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
+AD E+ +I+++ N +E PA
Sbjct: 540 LAD-----DEDTGPKIQIFYXGYNNLEEFPA 565
>pdb|4F9I|A Chain A, Crystal Structure Of Proline Utilization A (Puta) From
Geobacter Sulfurreducens Pca
pdb|4F9I|B Chain B, Crystal Structure Of Proline Utilization A (Puta) From
Geobacter Sulfurreducens Pca
Length = 1026
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 26 MDTNAQLWYIVREYISNSQGFVVVETNFRMYAYSTSKLHYEILR--LFSKIEYQLPNLIV 83
+ T+ L +REY N Q + A +L L S IE IV
Sbjct: 84 LTTSKLLTEHIREYFGNEQDMPAFMSTGAKVAGMLGSFGGAVLNKVLTSNIEEMARQFIV 143
Query: 84 GATTKESLNN 93
G TTKE++ N
Sbjct: 144 GETTKEAVKN 153
>pdb|4GT6|A Chain A, Crystal Structure Of A Leucine Rich Cell Surface Protein
(Faepraa2165_01021) From Faecalibacterium Prausnitzii
A2-165 At 1.80 A Resolution
Length = 394
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 9/127 (7%)
Query: 12 SEDLEAYAIGQWELMDTNAQLWYIVREYISNSQGFVV-VETNFRMYAYSTSKLHYEILRL 70
S+ AY G ++ + NA + +Y N + + Y Y SK+ R+
Sbjct: 3 SDSPXAYTDGSYQFI-LNADNTATITKYTGNEHRITIPAQVTHGAYIYPVSKIGD---RV 58
Query: 71 FSKIEYQLPNLIVGATTKESLNNAFENGITAEQQNAHPRVADRIPSIPENVCDQIRLWES 130
F +Y L ++ + T E +NAF N + ++ + D PS + + Q + S
Sbjct: 59 FCNYKYVLTSVQIPDTVTEIGSNAFYNCTSLKRVT----IQDNKPSCVKKIGRQAFXFCS 114
Query: 131 DLNRVEM 137
+L + +
Sbjct: 115 ELTDIPI 121
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 26.2 bits (56), Expect = 8.2, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 32 LWYIVREYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESL 91
++Y +Y+S G + R+ ++STS Y++++ + + P + G+T + +
Sbjct: 358 IYYGTEQYMS---GGTDPDNRARIPSFSTSTTAYQVIQKLAPLRKSNPAIAYGSTQERWI 414
Query: 92 NN 93
NN
Sbjct: 415 NN 416
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 26.2 bits (56), Expect = 8.3, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 32 LWYIVREYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESL 91
++Y +Y+S G + R+ ++STS Y++++ + + P + G+T + +
Sbjct: 358 IYYGTEQYMS---GGTDPDNRARIPSFSTSTTAYQVIQKLAPLRKSNPAIAYGSTQERWI 414
Query: 92 NN 93
NN
Sbjct: 415 NN 416
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 26.2 bits (56), Expect = 8.3, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 32 LWYIVREYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESL 91
++Y +Y+S G + R+ ++STS Y++++ + + P + G+T + +
Sbjct: 358 IYYGTEQYMS---GGTDPDNRARIPSFSTSTTAYQVIQKLAPLRKSNPAIAYGSTQERWI 414
Query: 92 NN 93
NN
Sbjct: 415 NN 416
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 26.2 bits (56), Expect = 8.5, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 32 LWYIVREYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESL 91
++Y +Y+S G + R+ ++STS Y++++ + + P + G+T + +
Sbjct: 358 IYYGTEQYMS---GGTDPDNRARIPSFSTSTTAYQVIQKLAPLRKSNPAIAYGSTQERWI 414
Query: 92 NN 93
NN
Sbjct: 415 NN 416
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 26.2 bits (56), Expect = 8.5, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 32 LWYIVREYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESL 91
++Y +Y+S G + R+ ++STS Y++++ + + P + G+T + +
Sbjct: 358 IYYGTEQYMS---GGTDPDNRARIPSFSTSTTAYQVIQKLAPLRKSNPAIAYGSTQERWI 414
Query: 92 NN 93
NN
Sbjct: 415 NN 416
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 26.2 bits (56), Expect = 8.8, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 32 LWYIVREYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESL 91
++Y +Y+S G + R+ ++STS Y++++ + + P + G+T + +
Sbjct: 358 IYYGTEQYMS---GGTDPDNRARIPSFSTSTTAYQVIQKLAPLRKSNPAIAYGSTQERWI 414
Query: 92 NN 93
NN
Sbjct: 415 NN 416
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,088,670
Number of Sequences: 62578
Number of extensions: 197378
Number of successful extensions: 416
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 27
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)