BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036799
(166 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P87303|TFB2_SCHPO RNA polymerase II transcription factor B subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfb2 PE=1 SV=2
Length = 447
Score = 106 bits (265), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 79/126 (62%), Gaps = 6/126 (4%)
Query: 42 NSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITA 101
+ +GF++VETN+R+YAY++S L I+ LF+ + + NL+VG T++S+ A NGI A
Sbjct: 288 DDKGFIIVETNYRLYAYTSSPLQIAIIGLFANLRARFSNLVVGVITRDSIRRALMNGIAA 347
Query: 102 EQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAA 155
EQ +AHP++ +P +P + DQI LWE + NR+ TP + +F + F+ A
Sbjct: 348 EQIITYLTTHAHPQMRSNVPLLPPTLVDQIYLWELEKNRLRATPGILFRDFLTDSGFDQA 407
Query: 156 CDYARD 161
+YA++
Sbjct: 408 VEYAKE 413
>sp|P60027|TF2H4_PANTR General transcription factor IIH subunit 4 OS=Pan troglodytes
GN=GTF2H4 PE=3 SV=1
Length = 462
Score = 106 bits (264), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 6/123 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q
Sbjct: 305 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQI 364
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +
Sbjct: 365 IHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAH 424
Query: 159 ARD 161
AR+
Sbjct: 425 ARE 427
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 22 QWELMDTNAQLWYIVREYISNSQ--GFVVVETNFRMYAYSTSKL 63
Q+ L+DT AQLWY + +Y+ +Q G +VE ++ S S L
Sbjct: 202 QFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTL 245
>sp|Q92759|TF2H4_HUMAN General transcription factor IIH subunit 4 OS=Homo sapiens
GN=GTF2H4 PE=2 SV=1
Length = 462
Score = 106 bits (264), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 6/123 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q
Sbjct: 305 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQI 364
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +
Sbjct: 365 IHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAH 424
Query: 159 ARD 161
AR+
Sbjct: 425 ARE 427
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 22 QWELMDTNAQLWYIVREYISNSQ--GFVVVETNFRMYAYSTSKL 63
Q+ L+DT AQLWY + +Y+ +Q G +VE ++ S S L
Sbjct: 202 QFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTL 245
>sp|O70422|TF2H4_MOUSE General transcription factor IIH subunit 4 OS=Mus musculus
GN=Gtf2h4 PE=2 SV=1
Length = 463
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 6/123 (4%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V T+ES+ A +GITA+Q
Sbjct: 306 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQI 365
Query: 104 -----QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158
AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +
Sbjct: 366 IHFLRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAH 425
Query: 159 ARD 161
AR+
Sbjct: 426 ARE 428
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 22 QWELMDTNAQLWYIVREYISNSQ--GFVVVETNFRMYAYSTSKL 63
Q+ L+DT AQLWY + +Y+ +Q G +VE ++ S S L
Sbjct: 203 QFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTL 246
>sp|Q54C29|TF2H4_DICDI General transcription factor IIH subunit 4 OS=Dictyostelium
discoideum GN=gtf2h4 PE=3 SV=1
Length = 483
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 83/132 (62%), Gaps = 6/132 (4%)
Query: 37 REYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFE 96
R QG++V+ETN+R+YAY++S L +L LF K+ Y+LPNL VG T+ES+ A
Sbjct: 320 RTQTQKEQGYIVLETNYRLYAYTSSSLQISLLSLFVKMLYRLPNLAVGIITRESIRTALI 379
Query: 97 NGITAEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 150
+GITA+Q N+HP A+ IP+ V +QI LWE++ NR+ T + Y+ FP+ D
Sbjct: 380 HGITADQIIDFVRHNSHPNAANSGQPIPDVVAEQILLWEAERNRITYTKSVLYNSFPTND 439
Query: 151 VFEAACDYARDR 162
+ A +A+++
Sbjct: 440 CYIATLKFAKEQ 451
>sp|Q6BZX4|TFB2_YARLI RNA polymerase II transcription factor B subunit 2 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TFB2 PE=3 SV=1
Length = 467
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 78/133 (58%), Gaps = 6/133 (4%)
Query: 40 ISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGI 99
++ GF+++ETNFR+YAY+ S L +L LF ++ + N++ G ++S+ A NGI
Sbjct: 300 VAADSGFIILETNFRLYAYTESPLQIAVLNLFVNLKTRFANMVTGQINRDSVRFALSNGI 359
Query: 100 TAEQ------QNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 153
TAEQ +AHPR+ +P V DQI+LW+ +++R+ T + + EF + D ++
Sbjct: 360 TAEQIITYLSVHAHPRMKGMEHVLPPTVVDQIKLWQLEMDRIRATDGYLFSEFKNFDEYK 419
Query: 154 AACDYARDRSGLL 166
YA++ LL
Sbjct: 420 DVSTYAKELGVLL 432
>sp|Q6CLR2|TFB2_KLULA RNA polymerase II transcription factor B subunit 2 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=TFB2 PE=3 SV=1
Length = 496
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 78/146 (53%), Gaps = 24/146 (16%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G +++ETNF++Y+YS S L IL LF ++ + N++ G T+ES+ NA NGITAEQ
Sbjct: 322 GALIIETNFKLYSYSNSPLQIAILSLFVHLKSRFANMVTGQLTRESVRNALLNGITAEQI 381
Query: 104 -----QNAHPR------------------VADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHPR V + + +P V DQIRLW+ +L+R+
Sbjct: 382 IAYLETHAHPRMRRLAEENLSKKLELDPTVKETLQVLPPTVVDQIRLWQLELDRIISYDG 441
Query: 141 HYYDEFPSRDVFEAACDYARDRSGLL 166
+ Y +F S ++ DYA+D LL
Sbjct: 442 YLYTDFESYQEYQTVADYAKDIGVLL 467
>sp|Q6FP41|TFB2_CANGA RNA polymerase II transcription factor B subunit 2 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=TFB2 PE=3 SV=1
Length = 504
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 24/146 (16%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G +++ETNF++Y+Y S L IL LF ++ + N++ G T+ES+ A NGITA+Q
Sbjct: 327 GALIIETNFKLYSYCNSPLQIAILSLFVHLKSRFANMVAGQITRESIRRALINGITADQV 386
Query: 104 -----QNAHPRV------------------ADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHP++ D + +P V DQI+LW+ +L+RV
Sbjct: 387 IAYLESHAHPQMRRLAEEKLQKKLELDPNCKDPLQVLPPTVVDQIKLWQLELDRVLTYEG 446
Query: 141 HYYDEFPSRDVFEAACDYARDRSGLL 166
Y +F + F C YA+D LL
Sbjct: 447 SLYIDFDTAQDFNMLCKYAQDIGALL 472
>sp|Q75B51|TFB2_ASHGO RNA polymerase II transcription factor B subunit 2 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=TFB2 PE=3 SV=1
Length = 514
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 24/146 (16%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G ++VETNF++Y+YS S L IL LF ++ + N++ G T+ES+ A NGITA+Q
Sbjct: 339 GALIVETNFKLYSYSNSPLQIAILSLFIHLKTRFQNMVTGQITRESIRRALHNGITADQI 398
Query: 104 -----QNAHPRV------------------ADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHP++ D + +P V DQI+LW+ +L+R+
Sbjct: 399 IAYMETHAHPQMRRLAGDNLEKKLELDPNCRDTLQVLPPTVVDQIKLWQLELDRIISYDG 458
Query: 141 HYYDEFPSRDVFEAACDYARDRSGLL 166
+ + +F + ++ YARD LL
Sbjct: 459 YLFRDFDNLQEYQVLAQYARDIGVLL 484
>sp|Q02939|TFB2_YEAST RNA polymerase II transcription factor B subunit 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFB2 PE=1
SV=1
Length = 513
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 24/146 (16%)
Query: 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ- 103
G ++VETNF++Y+YS S L +L LF ++ + N+++G T+ES+ A NGITA+Q
Sbjct: 337 GSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQI 396
Query: 104 -----QNAHPRV------------------ADRIPSIPENVCDQIRLWESDLNRVEMTPA 140
+AHP++ + + +P V DQIRLW+ +L+RV
Sbjct: 397 IAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEG 456
Query: 141 HYYDEFPSRDVFEAACDYARDRSGLL 166
Y +F + + YA+D LL
Sbjct: 457 SLYSDFETSQEYNLLSKYAQDIGVLL 482
>sp|Q6BGW8|TFB2_DEBHA RNA polymerase II transcription factor B subunit 2 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=TFB2 PE=3 SV=2
Length = 515
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 48/174 (27%)
Query: 41 SNS-QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGI 99
SNS QG +++ETNF++YAY+ S L IL LF ++ + N++ G T+ES+ NA NGI
Sbjct: 313 SNSNQGTIILETNFKIYAYTNSPLEIAILNLFVHLKTRFSNMVCGQITRESIRNALYNGI 372
Query: 100 TAEQ------QNAHPRVA-----------------------------------------D 112
TA+Q +AH ++
Sbjct: 373 TADQIIKFLETHAHSQMKILAKERLDKKIEFDTSNNINTAGGAPQSQMMTNENGTTVAQH 432
Query: 113 RIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166
++ +P V DQI+LW+ +L+R++ + + +F S+ FEA +YA + LL
Sbjct: 433 KLEVLPPTVVDQIKLWQLELDRIQTFEGYLFKDFASQQEFEALSNYASEIGVLL 486
>sp|A3LNJ3|CLP1_PICST Protein CLP1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=CLP1 PE=3 SV=3
Length = 453
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 4 GIIARLPTSEDLEAYAIGQWELMDTNAQLWYIVREYISNSQGFVVVETNFRMYAYSTSKL 63
G + P S+ L+ + W T+ L++ ++ I + GFV V N +Y Y SKL
Sbjct: 183 GSLTATPISDSLDVESANGWGFTTTSGSLFHNPKQPIVKNYGFVDVNENLDLYKYQVSKL 242
Query: 64 HYEIL 68
+L
Sbjct: 243 GVTVL 247
>sp|Q04GY8|ADDB_OENOB ATP-dependent helicase/deoxyribonuclease subunit B OS=Oenococcus
oeni (strain ATCC BAA-331 / PSU-1) GN=rexB PE=3 SV=1
Length = 1161
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 54 RMYAYSTSKLHYEILRLFSK---IEYQLPNLIVGATTKESLNNAFENGITAEQQNAHPRV 110
R+ YS S+L + + + + I Q +++VG +E + E+ N R
Sbjct: 70 RLQVYSLSRLAWALTKERDQKTIISNQSVSILVGQVLRE---------LPIEKLNIFARS 120
Query: 111 ADRIPSIPENVCDQI-RLWESDLNRVEMTPAHYYDE 145
A R+P NV +Q+ +W S L E+ P H +D+
Sbjct: 121 A-RMPGFVANVAEQLLEIWRSGLTASEILPLHQFDD 155
>sp|A1VNY1|TOLB_POLNA Protein TolB OS=Polaromonas naphthalenivorans (strain CJ2) GN=tolB
PE=3 SV=1
Length = 429
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 26 MDTNAQLWYIVREYISNSQGFVVVETNFRMYAYSTSKLHYEIL 68
D +LW +VRE Q + V +++ R+ A+ S YE L
Sbjct: 115 FDVRLRLWDVVREQDLGGQSYTVTKSDLRLSAHRVSDFVYEKL 157
>sp|A9BHA8|EFG_PETMO Elongation factor G OS=Petrotoga mobilis (strain DSM 10674 / SJ95)
GN=fusA PE=3 SV=1
Length = 695
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 41 SNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGIT 100
S ++G + +T R Y KL E L L S+ E++ + IVG A ENG+
Sbjct: 491 SEAEGKYIRQTGGR-GQYGHVKLRVEPLPLNSEKEFEFVDKIVGGVIPREYIPAIENGVK 549
Query: 101 AEQQN----AHPRVADRI 114
Q+ +P VA R+
Sbjct: 550 ESMQDGVLLGYPMVAIRV 567
>sp|P45913|YQAP_BACSU Uncharacterized protein YqaP OS=Bacillus subtilis (strain 168)
GN=yqaP PE=4 SV=1
Length = 309
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 89 ESLNNAFENGITAEQQNAH 107
+ LNNAF+NGIT E+ N H
Sbjct: 132 KKLNNAFQNGITLEEINGH 150
>sp|Q9UKK3|PARP4_HUMAN Poly [ADP-ribose] polymerase 4 OS=Homo sapiens GN=PARP4 PE=1 SV=3
Length = 1724
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 71 FSKIE-YQLPNLIVGATTKESLNNAFENGITAEQQNAHPRVADRIPSI 117
FSK+E YQLP+ ++TK L +A N + E + R+ D + +
Sbjct: 592 FSKVEDYQLPDAKTSSSTKAGLQDASGNLVPLEDVHIKGRIIDTVAQV 639
>sp|P51641|CNTFR_CHICK Ciliary neurotrophic factor receptor subunit alpha OS=Gallus gallus
GN=CNTFR PE=2 SV=1
Length = 362
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 39 YISNSQGFVVVETNFRMYA----YSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNA 94
YI NS V+ M + ++ H L+LFS ++Y++ + A K S
Sbjct: 134 YIPNSFNISVIHGTREMVCEKDIFPKNRCHIRYLQLFSTVKYKVTLTVTNALGKNSTTLT 193
Query: 95 FENGITAEQQNAHPRVADRIPSIP 118
F+ + VA +P+ P
Sbjct: 194 FDEFAIVKPDPPESVVAKPVPNNP 217
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,484,474
Number of Sequences: 539616
Number of extensions: 2422995
Number of successful extensions: 5271
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5233
Number of HSP's gapped (non-prelim): 37
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)