Query 036799
Match_columns 166
No_of_seqs 103 out of 165
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 05:37:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00625 tfb2 Transcription f 100.0 2E-62 4.3E-67 443.8 17.9 122 45-166 292-420 (448)
2 KOG3471 RNA polymerase II tran 100.0 1.1E-61 2.4E-66 435.7 13.9 122 45-166 306-435 (465)
3 COG5144 TFB2 RNA polymerase II 100.0 3.7E-56 8E-61 393.4 9.0 123 44-166 290-418 (447)
4 PF03849 Tfb2: Transcription f 100.0 4.3E-41 9.3E-46 296.9 12.1 65 44-108 296-366 (366)
5 PF13625 Helicase_C_3: Helicas 99.2 3.9E-10 8.5E-15 85.9 11.4 110 47-158 2-113 (129)
6 TIGR00603 rad25 DNA repair hel 86.7 7.3 0.00016 38.6 10.6 87 43-137 21-109 (732)
7 PRK06015 keto-hydroxyglutarate 72.4 9.4 0.0002 32.0 5.3 91 44-143 28-129 (201)
8 TIGR01182 eda Entner-Doudoroff 64.6 16 0.00035 30.6 5.2 91 44-143 32-133 (204)
9 PRK07114 keto-hydroxyglutarate 63.0 30 0.00065 29.4 6.6 94 44-143 39-144 (222)
10 PF01081 Aldolase: KDPG and KH 62.1 9.8 0.00021 31.7 3.5 91 44-143 32-133 (196)
11 PRK13761 hypothetical protein; 59.4 5 0.00011 35.2 1.3 23 85-107 12-35 (248)
12 COG4109 Predicted transcriptio 58.6 11 0.00024 35.3 3.4 34 80-126 290-323 (432)
13 PRK05718 keto-hydroxyglutarate 56.0 17 0.00038 30.4 3.9 90 44-142 39-139 (212)
14 KOG2036 Predicted P-loop ATPas 51.9 9.9 0.00021 38.5 2.1 59 57-126 528-605 (1011)
15 PRK06552 keto-hydroxyglutarate 47.2 28 0.0006 29.1 3.8 88 44-140 37-138 (213)
16 cd06836 PLPDE_III_ODC_DapDC_li 47.1 1.6E+02 0.0034 26.1 8.8 85 52-161 27-113 (379)
17 PRK08508 biotin synthase; Prov 46.0 1.6E+02 0.0034 25.2 8.4 96 66-164 76-180 (279)
18 COG0800 Eda 2-keto-3-deoxy-6-p 44.7 57 0.0012 27.9 5.4 91 44-143 37-138 (211)
19 COG1701 Uncharacterized protei 41.4 14 0.0003 32.4 1.2 19 85-103 14-32 (256)
20 PRK14529 adenylate kinase; Pro 39.0 71 0.0015 26.9 5.1 70 74-152 22-91 (223)
21 TIGR01615 A_thal_3542 uncharac 35.0 16 0.00034 29.3 0.5 39 44-88 48-87 (131)
22 TIGR03551 F420_cofH 7,8-dideme 33.5 2E+02 0.0044 25.1 7.2 97 66-164 104-222 (343)
23 PF02787 CPSase_L_D3: Carbamoy 32.6 50 0.0011 25.5 2.9 36 90-132 15-51 (123)
24 PF13638 PIN_4: PIN domain; PD 31.8 2E+02 0.0044 20.9 8.5 92 11-102 29-130 (133)
25 PF13833 EF-hand_8: EF-hand do 29.8 34 0.00075 21.3 1.4 17 84-100 3-20 (54)
26 PF08727 P3A: Poliovirus 3A pr 29.2 38 0.00083 23.7 1.6 16 151-166 28-43 (57)
27 PF00571 CBS: CBS domain CBS d 28.6 58 0.0013 20.0 2.3 31 66-96 20-56 (57)
28 cd06568 GH20_SpHex_like A subg 28.6 45 0.00098 29.5 2.3 23 143-165 68-90 (329)
29 PF04491 Pox_T4_N: Poxvirus T4 27.9 55 0.0012 22.0 2.1 19 42-60 26-45 (46)
30 PF08671 SinI: Anti-repressor 27.6 40 0.00088 20.5 1.3 13 91-103 9-21 (30)
31 cd06564 GH20_DspB_LnbB-like Gl 27.5 52 0.0011 28.7 2.5 24 142-165 74-97 (326)
32 cd02742 GH20_hexosaminidase Be 26.6 47 0.001 28.7 2.1 24 142-165 64-87 (303)
33 cd06569 GH20_Sm-chitobiase-lik 26.5 50 0.0011 30.6 2.4 24 142-165 89-112 (445)
34 PF02784 Orn_Arg_deC_N: Pyrido 26.4 1.7E+02 0.0036 24.0 5.2 84 56-162 25-108 (251)
35 PF00406 ADK: Adenylate kinase 25.7 1.5E+02 0.0033 22.1 4.5 68 75-150 19-86 (151)
36 PRK09234 fbiC FO synthase; Rev 25.4 5.9E+02 0.013 26.0 9.6 97 66-164 591-709 (843)
37 PF07603 DUF1566: Protein of u 25.3 40 0.00087 24.4 1.2 12 8-19 52-63 (124)
38 cd06562 GH20_HexA_HexB-like Be 25.1 50 0.0011 29.2 2.0 22 144-165 64-85 (348)
39 cd06570 GH20_chitobiase-like_1 24.7 60 0.0013 28.6 2.4 23 143-165 61-83 (311)
40 PF12513 SUV3_C: Mitochondrial 24.6 11 0.00023 24.6 -1.8 19 66-84 9-27 (49)
41 cd06563 GH20_chitobiase-like T 24.0 61 0.0013 28.7 2.4 24 142-165 78-101 (357)
42 cd00452 KDPG_aldolase KDPG and 23.9 1.9E+02 0.0041 23.0 5.0 44 53-98 30-76 (190)
43 COG2154 Pterin-4a-carbinolamin 22.5 32 0.00068 26.4 0.2 36 128-163 21-57 (101)
44 PF10510 PIG-S: Phosphatidylin 22.4 60 0.0013 30.4 2.0 35 65-99 406-440 (517)
45 KOG0287 Postreplication repair 21.7 1.9E+02 0.0041 27.3 5.0 90 72-161 237-359 (442)
46 COG5271 MDN1 AAA ATPase contai 20.7 2.4E+02 0.0052 33.0 6.1 110 20-144 1893-2005(4600)
47 cd06565 GH20_GcnA-like Glycosy 20.4 85 0.0019 27.2 2.5 22 144-165 54-75 (301)
No 1
>TIGR00625 tfb2 Transcription factor tfb2. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2e-62 Score=443.78 Aligned_cols=122 Identities=42% Similarity=0.795 Sum_probs=120.1
Q ss_pred ceEEEEecceEEEEcCCHhHHHHHHHHHhhHhhcCceEEEEeCHHHHHHHHHcCCChhh------hhcChhhh-hcCCCC
Q 036799 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ------QNAHPRVA-DRIPSI 117 (166)
Q Consensus 45 gfIIvETNFRvYAYT~S~LqiaiL~lF~~l~~r~PNlvvG~iTR~Sv~~Al~~GITA~Q------~~AHp~m~-~~~p~i 117 (166)
|||||||||||||||+||||++||++||+++||||||+||+|||+||++|+++|||||| +||||+|+ +..|+|
T Consensus 292 g~iivEtNfrvYaYt~s~l~~~il~lF~~~~~r~pnlvvg~iTr~Sv~~A~~~GITa~qIi~fl~~~ahp~~~~~~~~~l 371 (448)
T TIGR00625 292 GFIIVETNYRLYAYTESPLQIALIALFSELLARFPNMVVGQITRESIRRALANGITAQQIIHYLRTHAHPQMRKEQTPVL 371 (448)
T ss_pred ceEEEEecceEEEecCCHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHHHcCCCHHHHHHHHHhcCChhhhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999 99999998 478999
Q ss_pred CHHHHHHHHHHHHhcCceeeccceeecCCCCHHHHHHHHHHHHHcCCCC
Q 036799 118 PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166 (166)
Q Consensus 118 P~tV~DQIrLWE~ErnRl~~~~g~Ly~~F~s~~~f~~~~~yA~~~g~Ll 166 (166)
||||+|||||||.||||+++++|+||++|+|+.+|+++++||+++|+|+
T Consensus 372 P~tv~dQi~lWe~e~~R~~~~~~~l~~~f~s~~~y~~~~~ya~~~~~l~ 420 (448)
T TIGR00625 372 PPTIVDQIRLWELERDRLRFTEGVLYNDFLTQVDFELLLAYARELGVLV 420 (448)
T ss_pred ChHHHHHHHHHHHHhcceEeecceeeeecCCHHHHHHHHHHHHHcCEEE
Confidence 9999999999999999999999999999999999999999999999985
No 2
>KOG3471 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB2 [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.1e-61 Score=435.67 Aligned_cols=122 Identities=46% Similarity=0.828 Sum_probs=119.8
Q ss_pred ceEEEEecceEEEEcCCHhHHHHHHHHHhhHhhcCceEEEEeCHHHHHHHHHcCCChhh------hhcChhhhhcC--CC
Q 036799 45 GFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ------QNAHPRVADRI--PS 116 (166)
Q Consensus 45 gfIIvETNFRvYAYT~S~LqiaiL~lF~~l~~r~PNlvvG~iTR~Sv~~Al~~GITA~Q------~~AHp~m~~~~--p~ 116 (166)
|||||||||||||||+||||+||++|||++.||||||+||+|||||||+|+++||||+| +||||+|+... |+
T Consensus 306 G~iIVETN~riYAYT~S~lQiAvi~LF~~l~~rf~nlvvG~iTreSVr~Al~~GITa~QII~fLet~ahpqm~~~~~~~~ 385 (465)
T KOG3471|consen 306 GFIIVETNYRIYAYTNSPLQIAVIALFTELTYRFPNLVVGVITRESVRRALDNGITAEQIIHFLETHAHPQMRMLSPVPC 385 (465)
T ss_pred ceEEEEeccEEEEecCCHHHHHHHHHHHHHHhhccccceeeeeHHHHHHHHhcCCcHHHHHHHHHhccCchhhhcCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999 99999998865 99
Q ss_pred CCHHHHHHHHHHHHhcCceeeccceeecCCCCHHHHHHHHHHHHHcCCCC
Q 036799 117 IPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166 (166)
Q Consensus 117 iP~tV~DQIrLWE~ErnRl~~~~g~Ly~~F~s~~~f~~~~~yA~~~g~Ll 166 (166)
+||||+|||||||.||||+.+++|+||++|.|..||+.+++||+++|+||
T Consensus 386 LPpTv~dQIrLWElernR~~~~~g~LYs~Fls~~df~~l~eya~~~~vLv 435 (465)
T KOG3471|consen 386 LPPTVVDQIRLWELERNRLRMTEGYLYSDFLSLSDFQLLLEYAREIGVLV 435 (465)
T ss_pred CCchHHhHHHHHHHhhcceecccchhHHhhhhhhhHHHHHHHHHHcCeEE
Confidence 99999999999999999999999999999999999999999999999986
No 3
>COG5144 TFB2 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB2 [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=3.7e-56 Score=393.44 Aligned_cols=123 Identities=37% Similarity=0.720 Sum_probs=121.5
Q ss_pred CceEEEEecceEEEEcCCHhHHHHHHHHHhhHhhcCceEEEEeCHHHHHHHHHcCCChhh------hhcChhhhhcCCCC
Q 036799 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ------QNAHPRVADRIPSI 117 (166)
Q Consensus 44 ~gfIIvETNFRvYAYT~S~LqiaiL~lF~~l~~r~PNlvvG~iTR~Sv~~Al~~GITA~Q------~~AHp~m~~~~p~i 117 (166)
.||||||||||+||||+||+|+|+++|||++..||||||+|+|||||||+|+.+||||+| +||||+|+++.|.+
T Consensus 290 ~gfiIVETN~kiYaYtnSplqiavi~LF~nl~arf~Nlv~GiITreSirrAl~nGIta~QII~yLethahpqmr~~l~ll 369 (447)
T COG5144 290 KGFIIVETNNKIYAYTNSPLQIAVIHLFCNLTARFPNLVKGIITRESIRRALDNGITAKQIIHYLETHAHPQMRKKLELL 369 (447)
T ss_pred CceEEEEecceEEEecCChHHHHHHHHhhhhhcccchhhhhhccHHHHHHHHhcCccHHHHHHHHHhccChhhhhcCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CHHHHHHHHHHHHhcCceeeccceeecCCCCHHHHHHHHHHHHHcCCCC
Q 036799 118 PENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166 (166)
Q Consensus 118 P~tV~DQIrLWE~ErnRl~~~~g~Ly~~F~s~~~f~~~~~yA~~~g~Ll 166 (166)
|||++|||+|||.||||+...||+||+||.+..+|+++++||++.|+|+
T Consensus 370 PPtivdQI~lWele~nRi~~~pG~LysdFlt~s~y~~~~eya~~~gvLv 418 (447)
T COG5144 370 PPTIVDQIVLWELERNRIFMVPGYLYSDFLTLSDYQKVLEYAIRGGVLV 418 (447)
T ss_pred ChhhhhheeeeeeccCcEEeecchHHhhhhchhhHHHHHHHHHhcCeEE
Confidence 9999999999999999999999999999999999999999999999985
No 4
>PF03849 Tfb2: Transcription factor Tfb2; InterPro: IPR004598 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p52 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=4.3e-41 Score=296.95 Aligned_cols=65 Identities=55% Similarity=1.016 Sum_probs=64.1
Q ss_pred CceEEEEecceEEEEcCCHhHHHHHHHHHhhHhhcCceEEEEeCHHHHHHHHHcCCChhh------hhcCh
Q 036799 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ------QNAHP 108 (166)
Q Consensus 44 ~gfIIvETNFRvYAYT~S~LqiaiL~lF~~l~~r~PNlvvG~iTR~Sv~~Al~~GITA~Q------~~AHp 108 (166)
+|||||||||||||||+||||+|||++||+++||||||+||+||||||++|+++|||||| +||||
T Consensus 296 ~g~iivETNfrvYAYT~s~l~iaiL~lF~~~~~r~pnlvvg~iTr~Sv~~A~~~GIta~qIi~fL~~~aHp 366 (366)
T PF03849_consen 296 EGFIIVETNFRVYAYTNSPLQIAILSLFCELKYRFPNLVVGQITRESVRRALKNGITADQIISFLRSHAHP 366 (366)
T ss_pred CceEEEEecceEEEecCCHHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHHcCCCHHHHHHHHHhcCCC
Confidence 689999999999999999999999999999999999999999999999999999999999 99998
No 5
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=99.18 E-value=3.9e-10 Score=85.89 Aligned_cols=110 Identities=20% Similarity=0.243 Sum_probs=89.2
Q ss_pred EEEEecceEEEEcCCH--hHHHHHHHHHhhHhhcCceEEEEeCHHHHHHHHHcCCChhhhhcChhhhhcCCCCCHHHHHH
Q 036799 47 VVVETNFRMYAYSTSK--LHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQQNAHPRVADRIPSIPENVCDQ 124 (166)
Q Consensus 47 IIvETNFRvYAYT~S~--LqiaiL~lF~~l~~r~PNlvvG~iTR~Sv~~Al~~GITA~Q~~AHp~m~~~~p~iP~tV~DQ 124 (166)
+||+.||.|.+.+.+| -....|..|+++ .+..++.+..||+.|+.+|++.|+|+++..+-=.-.. ..-||++|..+
T Consensus 2 liVqpd~~I~v~~~~~~~~~~~~L~~fae~-~s~~~~~~yrlT~~Sl~~A~~~G~~~e~i~~~L~~~S-~~~lP~~v~~~ 79 (129)
T PF13625_consen 2 LIVQPDFEILVEPGHPSPADAWFLARFAEL-KSPDTMHVYRLTPASLWRAASAGLTAEEIIEFLERYS-KNPLPQNVEQS 79 (129)
T ss_pred EEECCCCEEEEeCCCCCHHHHHHHHHHhcc-cccCceEEEEECHHHHHHHHHcCCCHHHHHHHHHHHc-CCCCCHHHHHH
Confidence 6899999999977766 455899999999 6779999999999999999999999999222100011 23589999999
Q ss_pred HHHHHHhcCceeeccceeecCCCCHHHHHHHHHH
Q 036799 125 IRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDY 158 (166)
Q Consensus 125 IrLWE~ErnRl~~~~g~Ly~~F~s~~~f~~~~~y 158 (166)
|+-|.....|+++.++.++-...+.+..+.+.+.
T Consensus 80 i~~w~~~~g~v~l~~~~~~l~~~d~~~l~~l~~~ 113 (129)
T PF13625_consen 80 IEDWARRYGRVRLYKGAYLLECDDPELLDELLAD 113 (129)
T ss_pred HHHHHHhcCCEEEecCeEEEEECCHHHHHHHHhC
Confidence 9999999999999997777688887777666554
No 6
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.73 E-value=7.3 Score=38.62 Aligned_cols=87 Identities=20% Similarity=0.282 Sum_probs=68.8
Q ss_pred CCceEEEEecceEEEEcCCHhH-HHHHHHHHhhHhhcCceEEEEeCHHHHHHHHHcCCChhh-hhcChhhhhcCCCCCHH
Q 036799 43 SQGFVVVETNFRMYAYSTSKLH-YEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ-QNAHPRVADRIPSIPEN 120 (166)
Q Consensus 43 ~~gfIIvETNFRvYAYT~S~Lq-iaiL~lF~~l~~r~PNlvvG~iTR~Sv~~Al~~GITA~Q-~~AHp~m~~~~p~iP~t 120 (166)
++|.|++||--.+| -+ -..|.-|+|+..|--++..-.||.=|+-.|...|+++++ ...--... ...||++
T Consensus 21 ~d~~i~lE~~~p~~------~~a~~fl~~~aEp~~rp~~iHeY~lT~~sl~~A~s~g~~~~~ii~~L~~~s--k~~~p~~ 92 (732)
T TIGR00603 21 PDGHIFLESFSPLY------KQAQDFLVAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETEDIIEVLGRLS--KTPIPKG 92 (732)
T ss_pred CCCeEEEEeCCccH------HHHHHHHHHhcccccChhheEEEeccHHHHHHHHHcCCCHHHHHHHHHHHh--CCCCCHH
Confidence 36788888743322 12 278899999999999999999999999999999999999 22211222 2379999
Q ss_pred HHHHHHHHHHhcCceee
Q 036799 121 VCDQIRLWESDLNRVEM 137 (166)
Q Consensus 121 V~DQIrLWE~ErnRl~~ 137 (166)
|.+.|+.+-.--.++++
T Consensus 93 i~~~i~~~~~~ygk~kl 109 (732)
T TIGR00603 93 IIEFIRLCTQSYGKVKL 109 (732)
T ss_pred HHHHHHHHHHhcCcEEE
Confidence 99999999999888877
No 7
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.43 E-value=9.4 Score=32.00 Aligned_cols=91 Identities=16% Similarity=0.285 Sum_probs=65.6
Q ss_pred CceEEEEecceEEEEcCCHhHHHHHHHHHhhHhhcCceEEE---EeCHHHHHHHHHcCCChhh-hhcChhhhh-----cC
Q 036799 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVG---ATTKESLNNAFENGITAEQ-QNAHPRVAD-----RI 114 (166)
Q Consensus 44 ~gfIIvETNFRvYAYT~S~LqiaiL~lF~~l~~r~PNlvvG---~iTR~Sv~~Al~~GITA~Q-~~AHp~m~~-----~~ 114 (166)
.|+=.+|-.++ +|-- +..+.++..++|++.|| ++|.+.+++|.+.|-.-== -+..|.+.+ ..
T Consensus 28 gGi~~iEit~~------tp~a---~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~vi~~a~~~~i 98 (201)
T PRK06015 28 GGLPAIEITLR------TPAA---LDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQELLAAANDSDV 98 (201)
T ss_pred CCCCEEEEeCC------CccH---HHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCC
Confidence 56667777765 4433 34455567778999999 8999999999999954222 334444432 35
Q ss_pred CCCC--HHHHHHHHHHHHhcCceeeccceee
Q 036799 115 PSIP--ENVCDQIRLWESDLNRVEMTPAHYY 143 (166)
Q Consensus 115 p~iP--~tV~DQIrLWE~ErnRl~~~~g~Ly 143 (166)
|.+| -|..+=...|+.=-+-+|+.|+-.+
T Consensus 99 ~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~ 129 (201)
T PRK06015 99 PLLPGAATPSEVMALREEGYTVLKFFPAEQA 129 (201)
T ss_pred CEeCCCCCHHHHHHHHHCCCCEEEECCchhh
Confidence 8888 6777888899999999999997554
No 8
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=64.58 E-value=16 Score=30.64 Aligned_cols=91 Identities=20% Similarity=0.374 Sum_probs=63.2
Q ss_pred CceEEEEecceEEEEcCCHhHHHHHHHHHhhHhhcCceEEE---EeCHHHHHHHHHcCCChhh-hhcChhhhh-----cC
Q 036799 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVG---ATTKESLNNAFENGITAEQ-QNAHPRVAD-----RI 114 (166)
Q Consensus 44 ~gfIIvETNFRvYAYT~S~LqiaiL~lF~~l~~r~PNlvvG---~iTR~Sv~~Al~~GITA~Q-~~AHp~m~~-----~~ 114 (166)
.|.=.+|--+ ++|--... +.++..++|++.|| ++|.+.+++|.+.|-.-=- -+..|.+.+ ..
T Consensus 32 ~Gi~~iEit~------~t~~a~~~---i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~~~~v~~~~~~~~i 102 (204)
T TIGR01182 32 GGLRVLEVTL------RTPVALDA---IRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPGLTPELAKHAQDHGI 102 (204)
T ss_pred cCCCEEEEeC------CCccHHHH---HHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCC
Confidence 4555666655 35555444 44555678999999 8999999999999854322 233333322 35
Q ss_pred CCCC--HHHHHHHHHHHHhcCceeeccceee
Q 036799 115 PSIP--ENVCDQIRLWESDLNRVEMTPAHYY 143 (166)
Q Consensus 115 p~iP--~tV~DQIrLWE~ErnRl~~~~g~Ly 143 (166)
|.+| -|-.+=..-|+.--+-+|+.|+-.+
T Consensus 103 ~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~~ 133 (204)
T TIGR01182 103 PIIPGVATPSEIMLALELGITALKLFPAEVS 133 (204)
T ss_pred cEECCCCCHHHHHHHHHCCCCEEEECCchhc
Confidence 7888 5677778889999999999997655
No 9
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=63.03 E-value=30 Score=29.40 Aligned_cols=94 Identities=19% Similarity=0.240 Sum_probs=64.9
Q ss_pred CceEEEEecceEEEEcCCHhHHHHHHHHH-hhHhhcCceEEE---EeCHHHHHHHHHcCCChhh-hhcChhhhh-----c
Q 036799 44 QGFVVVETNFRMYAYSTSKLHYEILRLFS-KIEYQLPNLIVG---ATTKESLNNAFENGITAEQ-QNAHPRVAD-----R 113 (166)
Q Consensus 44 ~gfIIvETNFRvYAYT~S~LqiaiL~lF~-~l~~r~PNlvvG---~iTR~Sv~~Al~~GITA~Q-~~AHp~m~~-----~ 113 (166)
.|.-++|-=|| +|-=...+..+. +...++|++.|| ++|.+.++.|.+.|-.-== -+..|.+.+ .
T Consensus 39 gGi~~iEiT~~------tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~~~~~v~~~~~~~~ 112 (222)
T PRK07114 39 GGARVFEFTNR------GDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPLFNPDIAKVCNRRK 112 (222)
T ss_pred CCCCEEEEeCC------CCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcC
Confidence 46667776554 444444444443 445679999999 8999999999999954222 334444432 4
Q ss_pred CCCCC--HHHHHHHHHHHHhcCceeeccceee
Q 036799 114 IPSIP--ENVCDQIRLWESDLNRVEMTPAHYY 143 (166)
Q Consensus 114 ~p~iP--~tV~DQIrLWE~ErnRl~~~~g~Ly 143 (166)
.|.+| -|..+=...|+.=-+-+|+.|+-.+
T Consensus 113 i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~ 144 (222)
T PRK07114 113 VPYSPGCGSLSEIGYAEELGCEIVKLFPGSVY 144 (222)
T ss_pred CCEeCCCCCHHHHHHHHHCCCCEEEECccccc
Confidence 68888 6777778899999999999996533
No 10
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=62.14 E-value=9.8 Score=31.72 Aligned_cols=91 Identities=23% Similarity=0.364 Sum_probs=58.5
Q ss_pred CceEEEEecceEEEEcCCHhHHHHHHHHHhhHhhcCceEEE---EeCHHHHHHHHHcCCChhh-hhcChhhhh-----cC
Q 036799 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVG---ATTKESLNNAFENGITAEQ-QNAHPRVAD-----RI 114 (166)
Q Consensus 44 ~gfIIvETNFRvYAYT~S~LqiaiL~lF~~l~~r~PNlvvG---~iTR~Sv~~Al~~GITA~Q-~~AHp~m~~-----~~ 114 (166)
.|+=++|--|| +|-=. ..+.++..++|++.|| ++|.+.+++|.+.|-.-== -+..|.+.+ ..
T Consensus 32 gGi~~iEiT~~------t~~a~---~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~~~~~v~~~~~~~~i 102 (196)
T PF01081_consen 32 GGIRAIEITLR------TPNAL---EAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPGFDPEVIEYAREYGI 102 (196)
T ss_dssp TT--EEEEETT------STTHH---HHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS--HHHHHHHHHHTS
T ss_pred CCCCEEEEecC------CccHH---HHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCC
Confidence 56677887776 34333 3345566788999999 8999999999999843221 334444433 35
Q ss_pred CCCC--HHHHHHHHHHHHhcCceeeccceee
Q 036799 115 PSIP--ENVCDQIRLWESDLNRVEMTPAHYY 143 (166)
Q Consensus 115 p~iP--~tV~DQIrLWE~ErnRl~~~~g~Ly 143 (166)
|.+| -|..+=...|+.-.+-+|+.|+-.+
T Consensus 103 ~~iPG~~TptEi~~A~~~G~~~vK~FPA~~~ 133 (196)
T PF01081_consen 103 PYIPGVMTPTEIMQALEAGADIVKLFPAGAL 133 (196)
T ss_dssp EEEEEESSHHHHHHHHHTT-SEEEETTTTTT
T ss_pred cccCCcCCHHHHHHHHHCCCCEEEEecchhc
Confidence 7777 5666777789999999999987654
No 11
>PRK13761 hypothetical protein; Provisional
Probab=59.41 E-value=5 Score=35.21 Aligned_cols=23 Identities=43% Similarity=0.527 Sum_probs=19.6
Q ss_pred EeCHHHHHHHHHcCCChhh-hhcC
Q 036799 85 ATTKESLNNAFENGITAEQ-QNAH 107 (166)
Q Consensus 85 ~iTR~Sv~~Al~~GITA~Q-~~AH 107 (166)
.++|+.+-+++++||+|.| ..||
T Consensus 12 L~~Rekiveg~~~Gi~a~qGLIAh 35 (248)
T PRK13761 12 LLTREKIVEGVEKGITAKQGLIAH 35 (248)
T ss_pred HHHHHHHHHHHHcCcccccchhhc
Confidence 4789999999999999999 4444
No 12
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=58.60 E-value=11 Score=35.27 Aligned_cols=34 Identities=26% Similarity=0.548 Sum_probs=29.3
Q ss_pred ceEEEEeCHHHHHHHHHcCCChhhhhcChhhhhcCCCCCHHHHHHHH
Q 036799 80 NLIVGATTKESLNNAFENGITAEQQNAHPRVADRIPSIPENVCDQIR 126 (166)
Q Consensus 80 NlvvG~iTR~Sv~~Al~~GITA~Q~~AHp~m~~~~p~iP~tV~DQIr 126 (166)
|=.+|+|||..+-+|+ +|....|-+++|+.|||-
T Consensus 290 ~~llGiitR~dvlk~l-------------q~~q~qpqvget~~d~I~ 323 (432)
T COG4109 290 NTLLGIITRQDVLKSL-------------QMIQRQPQVGETISDQIA 323 (432)
T ss_pred ceEEEEEEHHHHHHHH-------------HHhccCCcccccHHHHHH
Confidence 4468999999999998 577778999999999985
No 13
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=55.98 E-value=17 Score=30.44 Aligned_cols=90 Identities=24% Similarity=0.359 Sum_probs=59.0
Q ss_pred CceEEEEecceEEEEcCCHhHHHHHHHHHhhHhhcCceEEE---EeCHHHHHHHHHcCCChhh-hhcChhhh-----hcC
Q 036799 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVG---ATTKESLNNAFENGITAEQ-QNAHPRVA-----DRI 114 (166)
Q Consensus 44 ~gfIIvETNFRvYAYT~S~LqiaiL~lF~~l~~r~PNlvvG---~iTR~Sv~~Al~~GITA~Q-~~AHp~m~-----~~~ 114 (166)
.|.=++|--++ +|- =+..+.++..+||++.+| ++|.+.++.|++.|-.-== -+..|.+. ...
T Consensus 39 ~Gi~~iEitl~------~~~---~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~~vi~~a~~~~i 109 (212)
T PRK05718 39 GGLPVLEVTLR------TPA---ALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGLTPPLLKAAQEGPI 109 (212)
T ss_pred cCCCEEEEecC------Ccc---HHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCC
Confidence 35667776643 443 344455666789999999 8999999999999843222 22333332 235
Q ss_pred CCCC--HHHHHHHHHHHHhcCceeecccee
Q 036799 115 PSIP--ENVCDQIRLWESDLNRVEMTPAHY 142 (166)
Q Consensus 115 p~iP--~tV~DQIrLWE~ErnRl~~~~g~L 142 (166)
+.+| -|..+=...|+.--+-+++.|+-.
T Consensus 110 ~~iPG~~TptEi~~a~~~Ga~~vKlFPa~~ 139 (212)
T PRK05718 110 PLIPGVSTPSELMLGMELGLRTFKFFPAEA 139 (212)
T ss_pred CEeCCCCCHHHHHHHHHCCCCEEEEccchh
Confidence 7777 344663348899999999977543
No 14
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=51.95 E-value=9.9 Score=38.54 Aligned_cols=59 Identities=25% Similarity=0.488 Sum_probs=44.3
Q ss_pred EEcCCHhHHHHHH------HHHhh------HhhcCceEE-------EEeCHHHHHHHHHcCCChhhhhcChhhhhcCCCC
Q 036799 57 AYSTSKLHYEILR------LFSKI------EYQLPNLIV-------GATTKESLNNAFENGITAEQQNAHPRVADRIPSI 117 (166)
Q Consensus 57 AYT~S~LqiaiL~------lF~~l------~~r~PNlvv-------G~iTR~Sv~~Al~~GITA~Q~~AHp~m~~~~p~i 117 (166)
-|.|||-.+.+|+ |||=+ .-.+|..++ |.|+|+|+...++.|=.|. ...|
T Consensus 528 HYKNSPNDLQllsDAPaH~LFvLl~PVd~~~~~iPdvlcviQv~lEG~isr~si~~sL~~G~~a~-----------GdlI 596 (1011)
T KOG2036|consen 528 HYKNSPNDLQLLSDAPAHHLFVLLGPVDPSQNAIPDVLCVIQVCLEGRISRQSIENSLRRGKRAA-----------GDLI 596 (1011)
T ss_pred hccCCchhhhhhccCcccceEEEecCcCcccCCCCcceEEEEEeecceecHHHHHHHHhcccccc-----------CCcc
Confidence 3788998888885 67732 457777543 7999999999999995442 5678
Q ss_pred CHHHHHHHH
Q 036799 118 PENVCDQIR 126 (166)
Q Consensus 118 P~tV~DQIr 126 (166)
|=+|+.|.+
T Consensus 597 pW~vseQf~ 605 (1011)
T KOG2036|consen 597 PWTVSEQFQ 605 (1011)
T ss_pred ceehhhhhc
Confidence 888888863
No 15
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=47.21 E-value=28 Score=29.12 Aligned_cols=88 Identities=17% Similarity=0.288 Sum_probs=57.8
Q ss_pred CceEEEEecceEEEEcCCHhHHHHHHHHHhhHhhc---CceEEE---EeCHHHHHHHHHcCCChhh-hhcChhhh-----
Q 036799 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQL---PNLIVG---ATTKESLNNAFENGITAEQ-QNAHPRVA----- 111 (166)
Q Consensus 44 ~gfIIvETNFRvYAYT~S~LqiaiL~lF~~l~~r~---PNlvvG---~iTR~Sv~~Al~~GITA~Q-~~AHp~m~----- 111 (166)
.|.-++|-=|| +|--.. .+.++..++ |++++| ++|.+.+++|.+.|-.-== -+..|.+.
T Consensus 37 ~Gi~~iEit~~------~~~a~~---~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~~~~v~~~~~~ 107 (213)
T PRK06552 37 GGIKAIEVTYT------NPFASE---VIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPSFNRETAKICNL 107 (213)
T ss_pred CCCCEEEEECC------CccHHH---HHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCCCCHHHHHHHHH
Confidence 56677776665 444333 445555567 579999 8999999999999953222 23333332
Q ss_pred hcCCCCC--HHHHHHHHHHHHhcCceeeccc
Q 036799 112 DRIPSIP--ENVCDQIRLWESDLNRVEMTPA 140 (166)
Q Consensus 112 ~~~p~iP--~tV~DQIrLWE~ErnRl~~~~g 140 (166)
+..|.+| .|..+=.+.|+.--+-+++.++
T Consensus 108 ~~i~~iPG~~T~~E~~~A~~~Gad~vklFPa 138 (213)
T PRK06552 108 YQIPYLPGCMTVTEIVTALEAGSEIVKLFPG 138 (213)
T ss_pred cCCCEECCcCCHHHHHHHHHcCCCEEEECCc
Confidence 2468888 4555556678888888888663
No 16
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=47.07 E-value=1.6e+02 Score=26.11 Aligned_cols=85 Identities=13% Similarity=0.129 Sum_probs=59.9
Q ss_pred cce-EEEEcCCHhHHHHHHHHHhhHhhcCceEEEEeCHHHHHHHHHcCCChhh-hhcChhhhhcCCCCCHHHHHHHHHHH
Q 036799 52 NFR-MYAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQ-QNAHPRVADRIPSIPENVCDQIRLWE 129 (166)
Q Consensus 52 NFR-vYAYT~S~LqiaiL~lF~~l~~r~PNlvvG~iTR~Sv~~Al~~GITA~Q-~~AHp~m~~~~p~iP~tV~DQIrLWE 129 (166)
|++ .||...+|. .+||+++.+.- +-+=.-+...++.|++.|+..++ ...+|. -+..-.++.
T Consensus 27 ~~~~~yAvKaN~~-~~il~~l~~~G-----~g~DvaS~~El~~al~~G~~~~~Ii~~gp~-------K~~~~L~~a---- 89 (379)
T cd06836 27 PVLHTFAVKANPL-VPVLRLLAEAG-----AGAEVASPGELELALAAGFPPERIVFDSPA-------KTRAELREA---- 89 (379)
T ss_pred CcEEEEEEecCCC-HHHHHHHHHcC-----CcEEEcCHHHHHHHHHcCCChhhEEEeCCC-------CCHHHHHHH----
Confidence 455 399998886 46777776653 33446788889999999999999 555554 233322222
Q ss_pred HhcCceeeccceeecCCCCHHHHHHHHHHHHH
Q 036799 130 SDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 161 (166)
Q Consensus 130 ~ErnRl~~~~g~Ly~~F~s~~~f~~~~~yA~~ 161 (166)
...|+++ .++|.++.+.+.+.|++
T Consensus 90 -------i~~gv~i-~iDS~~El~~i~~~a~~ 113 (379)
T cd06836 90 -------LELGVAI-NIDNFQELERIDALVAE 113 (379)
T ss_pred -------HHCCCEE-EECCHHHHHHHHHHHHH
Confidence 2447766 79999999999999876
No 17
>PRK08508 biotin synthase; Provisional
Probab=46.03 E-value=1.6e+02 Score=25.15 Aligned_cols=96 Identities=10% Similarity=0.049 Sum_probs=64.4
Q ss_pred HHHHHHHhhHhhcCceEE----EEeCHHHHHHHHHcCCChhh---hhcChhhhhc-CC-CCCHHHHHHHHHHHHhcCcee
Q 036799 66 EILRLFSKIEYQLPNLIV----GATTKESLNNAFENGITAEQ---QNAHPRVADR-IP-SIPENVCDQIRLWESDLNRVE 136 (166)
Q Consensus 66 aiL~lF~~l~~r~PNlvv----G~iTR~Sv~~Al~~GITA~Q---~~AHp~m~~~-~p-~iP~tV~DQIrLWE~ErnRl~ 136 (166)
-++..+..++.++|++.+ |.+|++.+++-.+.|+++=. --+ +...++ ++ .=+..+.+-|+.. .+ --++
T Consensus 76 ~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~-~~~~~~i~~~~~~~~~l~~i~~a-~~-~Gi~ 152 (279)
T PRK08508 76 YVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETS-KEFFPKICTTHTWEERFQTCENA-KE-AGLG 152 (279)
T ss_pred HHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccch-HHHhcCCCCCCCHHHHHHHHHHH-HH-cCCe
Confidence 456667778888898644 79999999998899996655 111 121111 11 1123444455554 33 3489
Q ss_pred eccceeecCCCCHHHHHHHHHHHHHcCC
Q 036799 137 MTPAHYYDEFPSRDVFEAACDYARDRSG 164 (166)
Q Consensus 137 ~~~g~Ly~~F~s~~~f~~~~~yA~~~g~ 164 (166)
++-|+++--=++.++-.....+.+++|.
T Consensus 153 v~sg~I~GlGEt~ed~~~~l~~lr~L~~ 180 (279)
T PRK08508 153 LCSGGIFGLGESWEDRISFLKSLASLSP 180 (279)
T ss_pred ecceeEEecCCCHHHHHHHHHHHHcCCC
Confidence 9999999887888888888888888874
No 18
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=44.74 E-value=57 Score=27.94 Aligned_cols=91 Identities=21% Similarity=0.353 Sum_probs=66.1
Q ss_pred CceEEEEecceEEEEcCCHhHHHHHHHHHhhHhhcCceEEE---EeCHHHHHHHHHcCCChhh-hhcChhhhh-----cC
Q 036799 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVG---ATTKESLNNAFENGITAEQ-QNAHPRVAD-----RI 114 (166)
Q Consensus 44 ~gfIIvETNFRvYAYT~S~LqiaiL~lF~~l~~r~PNlvvG---~iTR~Sv~~Al~~GITA~Q-~~AHp~m~~-----~~ 114 (166)
.|+=.+|-=|| ||.=...+ ..+..++|+.++| ++|-+.+++|.+.|=.-== -+.||.+.+ ..
T Consensus 37 gGi~~IEITl~------sp~a~e~I---~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~~ev~~~a~~~~i 107 (211)
T COG0800 37 GGIPAIEITLR------TPAALEAI---RALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSPGLNPEVAKAANRYGI 107 (211)
T ss_pred cCCCeEEEecC------CCCHHHHH---HHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECCCCCHHHHHHHHhCCC
Confidence 46666777666 55444444 4556789999999 8999999999998831111 566666644 35
Q ss_pred CCCC--HHHHHHHHHHHHhcCceeeccceee
Q 036799 115 PSIP--ENVCDQIRLWESDLNRVEMTPAHYY 143 (166)
Q Consensus 115 p~iP--~tV~DQIrLWE~ErnRl~~~~g~Ly 143 (166)
|.+| -|...=+..||.=-+-+|+.++-.+
T Consensus 108 p~~PG~~TptEi~~Ale~G~~~lK~FPa~~~ 138 (211)
T COG0800 108 PYIPGVATPTEIMAALELGASALKFFPAEVV 138 (211)
T ss_pred cccCCCCCHHHHHHHHHcChhheeecCcccc
Confidence 8888 6777778899999999999987544
No 19
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.44 E-value=14 Score=32.42 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=17.5
Q ss_pred EeCHHHHHHHHHcCCChhh
Q 036799 85 ATTKESLNNAFENGITAEQ 103 (166)
Q Consensus 85 ~iTR~Sv~~Al~~GITA~Q 103 (166)
.+.|+.+-.++.+|||+.|
T Consensus 14 Ll~Reki~eg~~~Gi~~~q 32 (256)
T COG1701 14 LLIREKIIEGFEKGITVPQ 32 (256)
T ss_pred HHHHHHHHHHHHcCccccc
Confidence 3679999999999999999
No 20
>PRK14529 adenylate kinase; Provisional
Probab=38.97 E-value=71 Score=26.94 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=48.5
Q ss_pred hHhhcCceEEEEeCHHHHHHHHHcCCChhhhhcChhhhhcCCCCCHHHHHHHHHHHHhcCceeeccceeecCCCCHHHH
Q 036799 74 IEYQLPNLIVGATTKESLNNAFENGITAEQQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVF 152 (166)
Q Consensus 74 l~~r~PNlvvG~iTR~Sv~~Al~~GITA~Q~~AHp~m~~~~p~iP~tV~DQIrLWE~ErnRl~~~~g~Ly~~F~s~~~f 152 (166)
-.+.+|.+-+|.+.|+.+.. |-...+ .+...| +....+|..++-++-.+.+.... ..|++++.|+-..+.
T Consensus 22 ~~~~~~~is~gdllr~~i~~----~t~lg~-~i~~~i-~~G~lvpdei~~~lv~~~l~~~~---~~g~iLDGfPRt~~Q 91 (223)
T PRK14529 22 KKYDLAHIESGAIFREHIGG----GTELGK-KAKEYI-DRGDLVPDDITIPMILETLKQDG---KNGWLLDGFPRNKVQ 91 (223)
T ss_pred HHHCCCCcccchhhhhhccC----CChHHH-HHHHHH-hccCcchHHHHHHHHHHHHhccC---CCcEEEeCCCCCHHH
Confidence 45678999999999987642 222211 111123 34778999999999888887654 789999999986444
No 21
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615. of a number of uncharacterized plant proteins. The domain is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=35.03 E-value=16 Score=29.26 Aligned_cols=39 Identities=23% Similarity=0.472 Sum_probs=28.1
Q ss_pred CceEEEEecceEEEEcCCHhHHH-HHHHHHhhHhhcCceEEEEeCH
Q 036799 44 QGFVVVETNFRMYAYSTSKLHYE-ILRLFSKIEYQLPNLIVGATTK 88 (166)
Q Consensus 44 ~gfIIvETNFRvYAYT~S~Lqia-iL~lF~~l~~r~PNlvvG~iTR 88 (166)
..-+|||.||| +.+.|| ==.-+..+...||.+.||...|
T Consensus 48 ~~R~iVd~dFr------~~FeiARpt~~Y~~ll~~LP~vFVG~~~r 87 (131)
T TIGR01615 48 EMRVIIDLDFR------SEFEIARPTEEYKRLLESLPEVFVGTTER 87 (131)
T ss_pred cceEEEeccch------hhceecCCCHHHHHHHHhCCcceECCHHH
Confidence 34799999999 555442 1123667788999999997755
No 22
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=33.52 E-value=2e+02 Score=25.14 Aligned_cols=97 Identities=13% Similarity=0.174 Sum_probs=66.1
Q ss_pred HHHHHHHhhHhhcCceE---------------EEEeCHHHHHHHHHcCCChhh----hhcChhhhhc-CC-C-CCHHHHH
Q 036799 66 EILRLFSKIEYQLPNLI---------------VGATTKESLNNAFENGITAEQ----QNAHPRVADR-IP-S-IPENVCD 123 (166)
Q Consensus 66 aiL~lF~~l~~r~PNlv---------------vG~iTR~Sv~~Al~~GITA~Q----~~AHp~m~~~-~p-~-iP~tV~D 123 (166)
.++.++..++.++|++- .|.++++.+++--+.|++.=. ...+|.++++ +| - -.....+
T Consensus 104 ~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~ 183 (343)
T TIGR03551 104 FYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIE 183 (343)
T ss_pred HHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHH
Confidence 34777888888889874 366788888887788887433 3445666654 22 1 2345566
Q ss_pred HHHHHHHhcCceeeccceeecCCCCHHHHHHHHHHHHHcCC
Q 036799 124 QIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSG 164 (166)
Q Consensus 124 QIrLWE~ErnRl~~~~g~Ly~~F~s~~~f~~~~~yA~~~g~ 164 (166)
-|+....- -++..-|+++--=.+.++......+.++++.
T Consensus 184 ~i~~a~~~--Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~~ 222 (343)
T TIGR03551 184 IIKTAHKL--GIPTTATIMYGHVETPEHWVDHLLILREIQE 222 (343)
T ss_pred HHHHHHHc--CCcccceEEEecCCCHHHHHHHHHHHHHhhH
Confidence 66665544 4567788898755778888888888888763
No 23
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=32.60 E-value=50 Score=25.50 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=20.6
Q ss_pred HHHHHHHcCCChhhhhcChhhhhcCCCCCHHHHHHHH-HHHHhc
Q 036799 90 SLNNAFENGITAEQQNAHPRVADRIPSIPENVCDQIR-LWESDL 132 (166)
Q Consensus 90 Sv~~Al~~GITA~Q~~AHp~m~~~~p~iP~tV~DQIr-LWE~Er 132 (166)
.+.+||++|+|.++.|..- .|-+=+.+||+ |-+.|+
T Consensus 15 ~i~eAlrrG~sveeI~e~T-------~ID~wFL~~i~~Iv~~e~ 51 (123)
T PF02787_consen 15 AIAEALRRGYSVEEIHELT-------KIDPWFLEQIKNIVDMEK 51 (123)
T ss_dssp HHHHHHHTTB-HHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH-------CccHHHHHHHHHHHHHHH
Confidence 3679999999999944321 12233666665 444443
No 24
>PF13638 PIN_4: PIN domain; PDB: 2HWW_C 2HWX_A 2DOK_B 2HWY_B 2WP8_J.
Probab=31.80 E-value=2e+02 Score=20.88 Aligned_cols=92 Identities=16% Similarity=0.093 Sum_probs=64.5
Q ss_pred ChHHHHHHhhhhH----hhhchhHHHHHHHHHhhccCCceEEEEecceEEEEc----CCHhHHHHHHHHHhhHhhcCceE
Q 036799 11 TSEDLEAYAIGQW----ELMDTNAQLWYIVREYISNSQGFVVVETNFRMYAYS----TSKLHYEILRLFSKIEYQLPNLI 82 (166)
Q Consensus 11 ~~~~l~~~~~~~~----~l~~~~~qlw~~~~~~~~~~~gfIIvETNFRvYAYT----~S~LqiaiL~lF~~l~~r~PNlv 82 (166)
..+||+....+.- ++-....+...++........+.+.++++..-..-. ...-.-.||+.-..+....|+--
T Consensus 29 Vl~ELd~lk~~~~~~~~~~~~~ar~~~~~l~~~~~~~~~~i~~q~~~~~~~~~~~~~~~~~D~~Il~~a~~~~~~~~~~~ 108 (133)
T PF13638_consen 29 VLEELDRLKKSSRDRDRELRKRAREAIRWLEKLLKRGSRSIRVQTSDEEIDEDLNLDAQRNDDRILNCALYLQEENPGRK 108 (133)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCT-TTEEECTTTS-EES--S----HHHHHHHHHHHHHHHHCGCEE
T ss_pred HHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCCCeEecchhhhhcchhhhccccccHHHHHHHHHHHHHhcCCCe
Confidence 3678888887776 566667778888888888878899999986444421 23555689999889999998888
Q ss_pred EEEeCHHHH--HHHHHcCCChh
Q 036799 83 VGATTKESL--NNAFENGITAE 102 (166)
Q Consensus 83 vG~iTR~Sv--~~Al~~GITA~ 102 (166)
|-.+|-|.- ..|...||.+.
T Consensus 109 vvLvT~D~~l~~~A~~~gi~~~ 130 (133)
T PF13638_consen 109 VVLVTNDKNLRLKARAEGIPAV 130 (133)
T ss_dssp EEEEE--HHHHHHHHHTT--EE
T ss_pred EEEEeCCHHHHHHHhhcccccc
Confidence 888888776 67888888753
No 25
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=29.84 E-value=34 Score=21.32 Aligned_cols=17 Identities=35% Similarity=0.653 Sum_probs=14.0
Q ss_pred EEeCHHHHHHHHHc-CCC
Q 036799 84 GATTKESLNNAFEN-GIT 100 (166)
Q Consensus 84 G~iTR~Sv~~Al~~-GIT 100 (166)
|.||++.++.|++. |+.
T Consensus 3 G~i~~~~~~~~l~~~g~~ 20 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIK 20 (54)
T ss_dssp SEEEHHHHHHHHHHTTSS
T ss_pred CEECHHHHHHHHHHhCCC
Confidence 78999999999965 544
No 26
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=29.24 E-value=38 Score=23.67 Aligned_cols=16 Identities=6% Similarity=0.196 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHcCCCC
Q 036799 151 VFEAACDYARDRSGLL 166 (166)
Q Consensus 151 ~f~~~~~yA~~~g~Ll 166 (166)
+=+.|++||++.|.++
T Consensus 28 ~~~eV~~YC~~~GWIi 43 (57)
T PF08727_consen 28 DSPEVREYCEEQGWII 43 (57)
T ss_dssp --HHHHHHHHHHT--T
T ss_pred CCHHHHHHHHHCCccc
Confidence 4466999999999864
No 27
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=28.63 E-value=58 Score=20.01 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=20.9
Q ss_pred HHHHHHHhhHhh-c-----CceEEEEeCHHHHHHHHH
Q 036799 66 EILRLFSKIEYQ-L-----PNLIVGATTKESLNNAFE 96 (166)
Q Consensus 66 aiL~lF~~l~~r-~-----PNlvvG~iTR~Sv~~Al~ 96 (166)
.++..|.+-..+ + .+=++|+||++++.+++.
T Consensus 20 ~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 20 EALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 445555544433 2 356889999999998873
No 28
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=28.57 E-value=45 Score=29.45 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=20.2
Q ss_pred ecCCCCHHHHHHHHHHHHHcCCC
Q 036799 143 YDEFPSRDVFEAACDYARDRSGL 165 (166)
Q Consensus 143 y~~F~s~~~f~~~~~yA~~~g~L 165 (166)
...|-+++|++.+++||+++|+-
T Consensus 68 ~~~~YT~~di~elv~yA~~rgI~ 90 (329)
T cd06568 68 PGGYYTQEDYKDIVAYAAERHIT 90 (329)
T ss_pred CCCcCCHHHHHHHHHHHHHcCCE
Confidence 34688999999999999999984
No 29
>PF04491 Pox_T4_N: Poxvirus T4 protein, N terminus; InterPro: IPR007580 Poxvirus T4 protein is thought to be secreted or retained in the endoplasmic reticulum if the protein also contains an additional C-terminal region (IPR007579 from INTERPRO). M-T4 of myxoma virus (O55698 from SWISSPROT) is thought to protect infected lymphocytes from apoptosis and modulate the inflammatory response to virus infection [].
Probab=27.85 E-value=55 Score=22.02 Aligned_cols=19 Identities=26% Similarity=0.551 Sum_probs=15.0
Q ss_pred cCCceEEEEec-ceEEEEcC
Q 036799 42 NSQGFVVVETN-FRMYAYST 60 (166)
Q Consensus 42 ~~~gfIIvETN-FRvYAYT~ 60 (166)
...|.+|.|.| |||.+|.+
T Consensus 26 ~~~GGLItegNGfki~~hD~ 45 (46)
T PF04491_consen 26 QGPGGLITEGNGFKIFAHDE 45 (46)
T ss_pred cCCCcEEeeCCcEEEEEecc
Confidence 34577889988 99999874
No 30
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=27.58 E-value=40 Score=20.53 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=10.0
Q ss_pred HHHHHHcCCChhh
Q 036799 91 LNNAFENGITAEQ 103 (166)
Q Consensus 91 v~~Al~~GITA~Q 103 (166)
|+.|...|||.+|
T Consensus 9 i~eA~~~Gls~ee 21 (30)
T PF08671_consen 9 IKEAKESGLSKEE 21 (30)
T ss_dssp HHHHHHTT--HHH
T ss_pred HHHHHHcCCCHHH
Confidence 6899999999998
No 31
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.52 E-value=52 Score=28.66 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.7
Q ss_pred eecCCCCHHHHHHHHHHHHHcCCC
Q 036799 142 YYDEFPSRDVFEAACDYARDRSGL 165 (166)
Q Consensus 142 Ly~~F~s~~~f~~~~~yA~~~g~L 165 (166)
-...|-+++|++.+++||+++|+-
T Consensus 74 ~~~~~YT~~di~eiv~yA~~rgI~ 97 (326)
T cd06564 74 ANDGYYTKEEFKELIAYAKDRGVN 97 (326)
T ss_pred CCCCcccHHHHHHHHHHHHHcCCe
Confidence 345678999999999999999984
No 32
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=26.64 E-value=47 Score=28.69 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=20.7
Q ss_pred eecCCCCHHHHHHHHHHHHHcCCC
Q 036799 142 YYDEFPSRDVFEAACDYARDRSGL 165 (166)
Q Consensus 142 Ly~~F~s~~~f~~~~~yA~~~g~L 165 (166)
-...+-+++|++.+++||+++|+-
T Consensus 64 ~~~~~yT~~di~elv~yA~~rgI~ 87 (303)
T cd02742 64 SPGGFYTYAQLKDIIEYAAARGIE 87 (303)
T ss_pred CCCCeECHHHHHHHHHHHHHcCCE
Confidence 345688999999999999999984
No 33
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.52 E-value=50 Score=30.58 Aligned_cols=24 Identities=21% Similarity=0.139 Sum_probs=20.8
Q ss_pred eecCCCCHHHHHHHHHHHHHcCCC
Q 036799 142 YYDEFPSRDVFEAACDYARDRSGL 165 (166)
Q Consensus 142 Ly~~F~s~~~f~~~~~yA~~~g~L 165 (166)
-++.|-+++|++.+++||+++||-
T Consensus 89 ~~~g~YT~~di~eiv~yA~~rgI~ 112 (445)
T cd06569 89 SGSGYYSRADYIEILKYAKARHIE 112 (445)
T ss_pred ccCCccCHHHHHHHHHHHHHcCCE
Confidence 345688999999999999999984
No 34
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=26.40 E-value=1.7e+02 Score=24.04 Aligned_cols=84 Identities=12% Similarity=0.121 Sum_probs=55.0
Q ss_pred EEEcCCHhHHHHHHHHHhhHhhcCceEEEEeCHHHHHHHHHcCCChhhhhcChhhhhcCCCCCHHHHHHHHHHHHhcCce
Q 036799 56 YAYSTSKLHYEILRLFSKIEYQLPNLIVGATTKESLNNAFENGITAEQQNAHPRVADRIPSIPENVCDQIRLWESDLNRV 135 (166)
Q Consensus 56 YAYT~S~LqiaiL~lF~~l~~r~PNlvvG~iTR~Sv~~Al~~GITA~Q~~AHp~m~~~~p~iP~tV~DQIrLWE~ErnRl 135 (166)
||...++. -.||+.+.+.- +-+=..|...+..|++.|+..++...+ .|.-++.-.+... +.
T Consensus 25 yA~KaN~~-~~vl~~l~~~g-----~g~dv~S~~El~~a~~~g~~~~~Ii~~------gp~k~~~~l~~a~----~~--- 85 (251)
T PF02784_consen 25 YAVKANPN-PAVLKILAEEG-----CGFDVASPGELELALKAGFPPDRIIFT------GPGKSDEELEEAI----EN--- 85 (251)
T ss_dssp EEGGGS---HHHHHHHHHTT-----CEEEESSHHHHHHHHHTTTTGGGEEEE------CSS--HHHHHHHH----HH---
T ss_pred EEECcCCC-HHHHHHHHHcC-----CceEEecccchHHHHhhhccccceeEe------cCcccHHHHHHHH----hC---
Confidence 88888887 56777777654 344588999999999999999994433 3333443333331 11
Q ss_pred eeccceeecCCCCHHHHHHHHHHHHHc
Q 036799 136 EMTPAHYYDEFPSRDVFEAACDYARDR 162 (166)
Q Consensus 136 ~~~~g~Ly~~F~s~~~f~~~~~yA~~~ 162 (166)
|+-.-.++|.++.+.+.+.|++.
T Consensus 86 ----~~~~i~vDs~~el~~l~~~~~~~ 108 (251)
T PF02784_consen 86 ----GVATINVDSLEELERLAELAPEA 108 (251)
T ss_dssp ----TESEEEESSHHHHHHHHHHHCTH
T ss_pred ----CceEEEeCCHHHHHHHhccCCCc
Confidence 44333778888888888888764
No 35
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=25.69 E-value=1.5e+02 Score=22.14 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=41.6
Q ss_pred HhhcCceEEEEeCHHHHHHHHHcCCChhhhhcChhhhhcCCCCCHHHHHHHHHHHHhcCceeeccceeecCCCCHH
Q 036799 75 EYQLPNLIVGATTKESLNNAFENGITAEQQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 150 (166)
Q Consensus 75 ~~r~PNlvvG~iTR~Sv~~Al~~GITA~Q~~AHp~m~~~~p~iP~tV~DQIrLWE~ErnRl~~~~g~Ly~~F~s~~ 150 (166)
.+.|+.+.+|.+=|+.+ +.+-...+. .. .+.+....||..++-++-.++++.. ....|++.+.|+...
T Consensus 19 ~~~~~~is~~~llr~~~----~~~s~~g~~-i~-~~l~~g~~vp~~~v~~ll~~~l~~~--~~~~g~ildGfPrt~ 86 (151)
T PF00406_consen 19 RYGLVHISVGDLLREEI----KSDSELGKQ-IQ-EYLDNGELVPDELVIELLKERLEQP--PCNRGFILDGFPRTL 86 (151)
T ss_dssp HHTSEEEEHHHHHHHHH----HTTSHHHHH-HH-HHHHTTSS--HHHHHHHHHHHHHSG--GTTTEEEEESB-SSH
T ss_pred hcCcceechHHHHHHHH----hhhhHHHHH-HH-HHHHhhccchHHHHHHHHHHHHhhh--cccceeeeeeccccH
Confidence 45666666665545444 333221121 11 1233467899999999988888877 668999999999864
No 36
>PRK09234 fbiC FO synthase; Reviewed
Probab=25.36 E-value=5.9e+02 Score=25.96 Aligned_cols=97 Identities=14% Similarity=0.186 Sum_probs=67.8
Q ss_pred HHHHHHHhhHhhcCceEE---------------EEeCHHHHHHHHHcCCChhh----hhcChhhhhcC-C-CCCH-HHHH
Q 036799 66 EILRLFSKIEYQLPNLIV---------------GATTKESLNNAFENGITAEQ----QNAHPRVADRI-P-SIPE-NVCD 123 (166)
Q Consensus 66 aiL~lF~~l~~r~PNlvv---------------G~iTR~Sv~~Al~~GITA~Q----~~AHp~m~~~~-p-~iP~-tV~D 123 (166)
.++.++..++.++|++.+ |..++|.+++.-+.|..+=. ...++.+++.. | .+|. +-.+
T Consensus 591 ~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle 670 (843)
T PRK09234 591 GYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIE 670 (843)
T ss_pred HHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHH
Confidence 466778899999999988 46667777777777875544 45566666542 3 3332 2233
Q ss_pred HHHHHHHhcCceeeccceeecCCCCHHHHHHHHHHHHHcCC
Q 036799 124 QIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSG 164 (166)
Q Consensus 124 QIrLWE~ErnRl~~~~g~Ly~~F~s~~~f~~~~~yA~~~g~ 164 (166)
=|+. .-+--+.++-|.+|--=.+.++........++++.
T Consensus 671 ~i~~--Ah~lGi~~~stmm~G~~Et~edrv~hl~~LreLq~ 709 (843)
T PRK09234 671 VVTT--AHEVGLRSSSTMMYGHVDTPRHWVAHLRVLRDIQD 709 (843)
T ss_pred HHHH--HHHcCCCcccceEEcCCCCHHHHHHHHHHHHhcCc
Confidence 3333 34668889999999988888998888888888763
No 37
>PF07603 DUF1566: Protein of unknown function (DUF1566); InterPro: IPR011460 These proteins of unknown function are found in Leptospira interrogans and in several gamma proteobacteria.
Probab=25.29 E-value=40 Score=24.45 Aligned_cols=12 Identities=50% Similarity=0.775 Sum_probs=10.2
Q ss_pred cCCChHHHHHHh
Q 036799 8 RLPTSEDLEAYA 19 (166)
Q Consensus 8 ~~~~~~~l~~~~ 19 (166)
||||.+||..--
T Consensus 52 RLPt~~EL~~L~ 63 (124)
T PF07603_consen 52 RLPTIEELQSLY 63 (124)
T ss_pred cCCCHHHHHHHH
Confidence 899999998753
No 38
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=25.05 E-value=50 Score=29.23 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.4
Q ss_pred cCCCCHHHHHHHHHHHHHcCCC
Q 036799 144 DEFPSRDVFEAACDYARDRSGL 165 (166)
Q Consensus 144 ~~F~s~~~f~~~~~yA~~~g~L 165 (166)
+.|-+++|++.+++||+++|+-
T Consensus 64 ~~~YT~~di~eiv~yA~~rgI~ 85 (348)
T cd06562 64 SEVYTPEDVKEIVEYARLRGIR 85 (348)
T ss_pred CceECHHHHHHHHHHHHHcCCE
Confidence 3577999999999999999984
No 39
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=24.70 E-value=60 Score=28.59 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.1
Q ss_pred ecCCCCHHHHHHHHHHHHHcCCC
Q 036799 143 YDEFPSRDVFEAACDYARDRSGL 165 (166)
Q Consensus 143 y~~F~s~~~f~~~~~yA~~~g~L 165 (166)
+..|-+++|+..+++||++.|+-
T Consensus 61 ~~~~yT~~di~elv~yA~~rgI~ 83 (311)
T cd06570 61 DGLYYTQEQIREVVAYARDRGIR 83 (311)
T ss_pred CCCccCHHHHHHHHHHHHHcCCE
Confidence 34678999999999999999984
No 40
>PF12513 SUV3_C: Mitochondrial degradasome RNA helicase subunit C terminal; InterPro: IPR022192 This domain family is found in bacteria and eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00271 from PFAM. The yeast mitochondrial degradosome (mtEXO) is an NTP-dependent exoribonuclease involved in mitochondrial RNA metabolism. mtEXO is made up of two subunits: an RNase (DSS1) and an RNA helicase (SUV3). These co-purify with mitochondrial ribosomes. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 3RC8_A 3RC3_A.
Probab=24.58 E-value=11 Score=24.59 Aligned_cols=19 Identities=21% Similarity=0.644 Sum_probs=15.7
Q ss_pred HHHHHHHhhHhhcCceEEE
Q 036799 66 EILRLFSKIEYQLPNLIVG 84 (166)
Q Consensus 66 aiL~lF~~l~~r~PNlvvG 84 (166)
.++.+++=+.+|||++.+.
T Consensus 9 k~l~lYlWLs~Rfp~~F~d 27 (49)
T PF12513_consen 9 KVLDLYLWLSYRFPDVFPD 27 (49)
T ss_dssp HHHHHHHHHHCC-TTTSTT
T ss_pred HHHHHHHHHHHHcccccCC
Confidence 6899999999999998654
No 41
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=24.02 E-value=61 Score=28.68 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.5
Q ss_pred eecCCCCHHHHHHHHHHHHHcCCC
Q 036799 142 YYDEFPSRDVFEAACDYARDRSGL 165 (166)
Q Consensus 142 Ly~~F~s~~~f~~~~~yA~~~g~L 165 (166)
-...|-+++|++.+++||++.|+-
T Consensus 78 ~~~~~YT~~di~eiv~yA~~rgI~ 101 (357)
T cd06563 78 PYGGFYTQEEIREIVAYAAERGIT 101 (357)
T ss_pred ccCceECHHHHHHHHHHHHHcCCE
Confidence 345677999999999999999984
No 42
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=23.87 E-value=1.9e+02 Score=23.02 Aligned_cols=44 Identities=18% Similarity=0.322 Sum_probs=0.0
Q ss_pred ceEEEEcCCHhHHHHHHHHHhhHhhcCceEEE---EeCHHHHHHHHHcC
Q 036799 53 FRMYAYSTSKLHYEILRLFSKIEYQLPNLIVG---ATTKESLNNAFENG 98 (166)
Q Consensus 53 FRvYAYT~S~LqiaiL~lF~~l~~r~PNlvvG---~iTR~Sv~~Al~~G 98 (166)
+++-.++.+.-. -+..+..+..++|++.+| ++|++.+..|...|
T Consensus 30 ~~~vev~~~~~~--~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~G 76 (190)
T cd00452 30 IRAIEITLRTPG--ALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAG 76 (190)
T ss_pred CCEEEEeCCChh--HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC
No 43
>COG2154 Pterin-4a-carbinolamine dehydratase [Coenzyme metabolism]
Probab=22.48 E-value=32 Score=26.37 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=31.4
Q ss_pred HHHhcCceeeccceeecCCCCHHHH-HHHHHHHHHcC
Q 036799 128 WESDLNRVEMTPAHYYDEFPSRDVF-EAACDYARDRS 163 (166)
Q Consensus 128 WE~ErnRl~~~~g~Ly~~F~s~~~f-~~~~~yA~~~g 163 (166)
|+...++.+++..+-|++|...-.| ..+...|++.|
T Consensus 21 W~l~~~~~~l~r~f~FknF~~a~~F~~~vA~~Ae~~~ 57 (101)
T COG2154 21 WELADDGAKLTRTFKFKNFKQAIAFVNRVAEIAEKLN 57 (101)
T ss_pred CEEecCcceEEEEEEcCCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999988777 67777887765
No 44
>PF10510 PIG-S: Phosphatidylinositol-glycan biosynthesis class S protein; InterPro: IPR019540 Phosphatidylinositol-glycan biosynthesis class S protein (PIG-S) is one of several key, core components of the glycosylphosphatidylinositol (GPI) trans-amidase complex that mediates GPI anchoring in the endoplasmic reticulum. Anchoring occurs when a protein's C-terminal GPI attachment signal peptide is replaced with a pre-assembled GPI []. Mammalian GPI transamidase consists of at least five components: Gaa1, Gpi8, PIG-S, PIG-T, and PIG-U, all five of which are required for its function. It is possible that Gaa1, Gpi8, PIG-S, and PIG-T form a tightly associated core that is only weakly associated with PIG-U. The exact function of PIG-S is unclear [].
Probab=22.36 E-value=60 Score=30.40 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=28.3
Q ss_pred HHHHHHHHhhHhhcCceEEEEeCHHHHHHHHHcCC
Q 036799 65 YEILRLFSKIEYQLPNLIVGATTKESLNNAFENGI 99 (166)
Q Consensus 65 iaiL~lF~~l~~r~PNlvvG~iTR~Sv~~Al~~GI 99 (166)
...|.-++++..++|||+|..-..+.|..|+..--
T Consensus 406 ~~TL~SL~~L~~~i~~i~I~~~V~~~v~~al~~l~ 440 (517)
T PF10510_consen 406 SSTLQSLAKLLDSIPNIVIPDEVAERVQQALEALE 440 (517)
T ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHH
Confidence 35677799999999999999888888877765443
No 45
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=21.65 E-value=1.9e+02 Score=27.30 Aligned_cols=90 Identities=12% Similarity=0.254 Sum_probs=64.7
Q ss_pred HhhHhhcCceEEEEeCHHHHHHHHH-cCCChhh-------hhcChhhhhc------CCCCCHHHHHHHHHHHHhcCceee
Q 036799 72 SKIEYQLPNLIVGATTKESLNNAFE-NGITAEQ-------QNAHPRVADR------IPSIPENVCDQIRLWESDLNRVEM 137 (166)
Q Consensus 72 ~~l~~r~PNlvvG~iTR~Sv~~Al~-~GITA~Q-------~~AHp~m~~~------~p~iP~tV~DQIrLWE~ErnRl~~ 137 (166)
+.-..|+|-++-..+|...|++-+. .|.+-+= -|+|-.|.=+ .|+=-.+++.||.=||.-|+|...
T Consensus 237 ~~~r~rLPK~~y~lls~s~ik~KLse~GLst~G~kQ~likRh~~~v~lyNsncD~l~Pvs~ael~rql~~we~t~~k~~~ 316 (442)
T KOG0287|consen 237 VHKRKRLPKTVYNLLSDSDIKKKLSEHGLSTQGNKQQLIKRHQEFVHLYNSNCDALHPVSAAELVRQLENWEKTRMKLEA 316 (442)
T ss_pred HhhcccCchhhHhhccHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHhccccccCCcCHHHHHHHHHHHHHHhhcccc
Confidence 5566899999999999999988775 5766542 6666665422 366678899999999999999966
Q ss_pred ccce----eecCCCC---------------HHHHHHHHHHHHH
Q 036799 138 TPAH----YYDEFPS---------------RDVFEAACDYARD 161 (166)
Q Consensus 138 ~~g~----Ly~~F~s---------------~~~f~~~~~yA~~ 161 (166)
..|+ +|..=.. ..||..+++-|+.
T Consensus 317 ~~g~ek~mv~~~d~~~~~~~~i~~~w~k~~~~dFa~LI~~Ak~ 359 (442)
T KOG0287|consen 317 SKGNEKVMVFTKDQTEKEIDEIHSKWRKKHKSDFALLIDQAKK 359 (442)
T ss_pred ccCceeeEeecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6664 3432211 2577777777765
No 46
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=20.75 E-value=2.4e+02 Score=32.98 Aligned_cols=110 Identities=20% Similarity=0.115 Sum_probs=72.0
Q ss_pred hhhHhhhchhHHHHHHHHHhhccCCceEEEEecceEEEEcCCHhHHHHHHHHHhhHhhcCceEE---EEeCHHHHHHHHH
Q 036799 20 IGQWELMDTNAQLWYIVREYISNSQGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIV---GATTKESLNNAFE 96 (166)
Q Consensus 20 ~~~~~l~~~~~qlw~~~~~~~~~~~gfIIvETNFRvYAYT~S~LqiaiL~lF~~l~~r~PNlvv---G~iTR~Sv~~Al~ 96 (166)
+||||+||..-+.|+..-+.-+.++|.|.|=.-++ +---+|..-..-+.+-.-++.+ ++.| +.|++
T Consensus 1893 lG~Yeq~d~~r~~s~~se~~T~v~~~~~~v~~k~~-------~n~~~If~~lnll~~~~~~~~t~e~f~d~----~~~vn 1961 (4600)
T COG5271 1893 LGQYEQMDNGRFESCDSEVVTSVKEGKMVVFAKVE-------FNEKSIFDRLNLLFESERTLNTYERFVDT----NVAVN 1961 (4600)
T ss_pred hhhHHHhhhhhhhhhhHHHHHHHHhhheeEEEeec-------ccHHHHHHHHHHHHHHHhccchHHhhhHH----HhhcC
Confidence 79999999999999999888788888776532221 2222333322222333333332 2222 23333
Q ss_pred cCCChhhhhcChhhhhcCCCCCHHHHHHHHHHHHhcCceeeccceeec
Q 036799 97 NGITAEQQNAHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYD 144 (166)
Q Consensus 97 ~GITA~Q~~AHp~m~~~~p~iP~tV~DQIrLWE~ErnRl~~~~g~Ly~ 144 (166)
. -+|..-||-+.+....+-+...|-+.=.|.. .|+...+|++.+
T Consensus 1962 ~---~~~L~~h~~l~k~~gm~~ek~~~~~~~~eaS-~rfewfDg~llk 2005 (4600)
T COG5271 1962 P---LDQLTRHVLLAKEPGMLSEKLLDRCMHVEAS-DRFEWFDGWLLK 2005 (4600)
T ss_pred h---HhhhhhhHHHhcCcccccHHHHHHHhhhhhc-cceeeeeeeeEE
Confidence 3 4667788888888888888888888766766 899999998764
No 47
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.42 E-value=85 Score=27.20 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=19.7
Q ss_pred cCCCCHHHHHHHHHHHHHcCCC
Q 036799 144 DEFPSRDVFEAACDYARDRSGL 165 (166)
Q Consensus 144 ~~F~s~~~f~~~~~yA~~~g~L 165 (166)
+.+.|.+|++.+++||+++|+-
T Consensus 54 ~~~yT~~ei~ei~~yA~~~gI~ 75 (301)
T cd06565 54 RGAYTKEEIREIDDYAAELGIE 75 (301)
T ss_pred CCCcCHHHHHHHHHHHHHcCCE
Confidence 5678999999999999999984
Done!