Query 036799
Match_columns 166
No_of_seqs 103 out of 165
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 09:02:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dom_A RNA polymerase II trans 99.9 1.1E-24 3.8E-29 165.3 2.5 61 106-166 17-77 (108)
2 3dgp_A RNA polymerase II trans 99.8 4.5E-22 1.5E-26 143.9 3.1 48 119-166 2-49 (80)
3 3lab_A Putative KDPG (2-keto-3 47.6 16 0.00054 29.9 3.6 88 44-140 37-141 (217)
4 2d4z_A Chloride channel protei 42.9 22 0.00076 28.7 3.8 35 66-100 210-249 (250)
5 4e38_A Keto-hydroxyglutarate-a 33.4 36 0.0012 27.7 3.7 88 44-140 58-156 (232)
6 3s4e_A Dual specificity protei 28.3 24 0.00083 25.1 1.6 49 86-134 92-144 (144)
7 3hf7_A Uncharacterized CBS-dom 27.9 37 0.0013 23.3 2.5 44 56-100 81-130 (130)
8 1pbj_A Hypothetical protein; s 25.9 24 0.00081 23.4 1.1 22 80-101 41-62 (125)
9 1ng7_A Poliovirus 3A-N, genome 25.2 35 0.0012 23.0 1.9 14 153-166 32-45 (60)
10 3k2v_A Putative D-arabinose 5- 24.5 24 0.00082 24.6 1.0 21 80-100 71-91 (149)
11 1yht_A DSPB; beta barrel, hydr 23.7 35 0.0012 29.2 2.0 21 145-165 90-110 (367)
12 3oco_A Hemolysin-like protein 22.7 1.2E+02 0.0042 21.0 4.5 44 57-101 98-147 (153)
13 3fio_A A cystathionine beta-sy 21.9 45 0.0015 20.0 1.8 18 80-97 32-49 (70)
14 2yl5_A Beta-N-acetylhexosamini 21.3 48 0.0016 29.1 2.4 22 144-165 89-110 (442)
15 3rcn_A Beta-N-acetylhexosamini 20.3 58 0.002 29.7 2.8 23 143-165 217-239 (543)
No 1
>3dom_A RNA polymerase II transcription factor B subunit; protein-protein complex, heterodimer, beta-alpha-beta split, strand addition; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.1e-24 Score=165.29 Aligned_cols=61 Identities=31% Similarity=0.604 Sum_probs=45.4
Q ss_pred cChhhhhcCCCCCHHHHHHHHHHHHhcCceeeccceeecCCCCHHHHHHHHHHHHHcCCCC
Q 036799 106 AHPRVADRIPSIPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166 (166)
Q Consensus 106 AHp~m~~~~p~iP~tV~DQIrLWE~ErnRl~~~~g~Ly~~F~s~~~f~~~~~yA~~~g~Ll 166 (166)
..|+++.+.|+|||||+|||||||.|||||++++|+||++|.|+++|+++++||+++|+||
T Consensus 17 ~~~~~~~~~p~lPpTVvDQIrLWE~ErnRl~~~~G~LY~dF~s~~efe~v~~yA~e~gvLl 77 (108)
T 3dom_A 17 LDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLL 77 (108)
T ss_dssp ---------------CCCHHHHHHHHHTTCEEEEEEEEECCSCHHHHHHHHHHHHHHTCEE
T ss_pred cCcccccCCCCCCCcHHHHHHHHHHhhCceeccceEEEecCCCHHHHHHHHHHHHHcCeEE
Confidence 4566667789999999999999999999999999999999999999999999999999986
No 2
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4.5e-22 Score=143.92 Aligned_cols=48 Identities=35% Similarity=0.625 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCceeeccceeecCCCCHHHHHHHHHHHHHcCCCC
Q 036799 119 ENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDRSGLL 166 (166)
Q Consensus 119 ~tV~DQIrLWE~ErnRl~~~~g~Ly~~F~s~~~f~~~~~yA~~~g~Ll 166 (166)
|||+|||||||.|||||++++|+||++|+|+++|+++++||+++|+||
T Consensus 2 pTV~DQIrLWe~ErnRl~~~~g~Ly~~F~s~~efe~~~~yA~e~gvLl 49 (80)
T 3dgp_A 2 PTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLL 49 (80)
T ss_dssp ------------CGGGCEEEEEEEEECCSCHHHHHHHHHHHHHTTCEE
T ss_pred CchHHHHHHHHHhhCceeccceEEEecCCCHHHHHHHHHHHHHcCeEE
Confidence 799999999999999999999999999999999999999999999986
No 3
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=47.64 E-value=16 Score=29.87 Aligned_cols=88 Identities=18% Similarity=0.372 Sum_probs=60.4
Q ss_pred CceEEEEecceEEEEcCCHhHHHHHHHHHhhHhhcCceEEE---EeCHHHHHHHHHcCCChhh-hhcChhhhh-----cC
Q 036799 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVG---ATTKESLNNAFENGITAEQ-QNAHPRVAD-----RI 114 (166)
Q Consensus 44 ~gfIIvETNFRvYAYT~S~LqiaiL~lF~~l~~r~PNlvvG---~iTR~Sv~~Al~~GITA~Q-~~AHp~m~~-----~~ 114 (166)
.|.-.+|.-|| +|-..+.+ ..+..++|+++|| ++|.+.++.|.+.|-.-== -+..|.+.+ ..
T Consensus 37 gGi~~iEvt~~------t~~a~~~I---~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~fivsP~~~~evi~~~~~~~v 107 (217)
T 3lab_A 37 GGVHLLEVTLR------TEAGLAAI---SAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFIVSPGLTPELIEKAKQVKL 107 (217)
T ss_dssp TTCCEEEEETT------STTHHHHH---HHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCC------CccHHHHH---HHHHHHCCCCeEeeccccCHHHHHHHHHcCCCEEEeCCCcHHHHHHHHHcCC
Confidence 46677887766 45544444 4556788999999 8999999999999843211 122333322 24
Q ss_pred ------CCCC--HHHHHHHHHHHHhcCceeeccc
Q 036799 115 ------PSIP--ENVCDQIRLWESDLNRVEMTPA 140 (166)
Q Consensus 115 ------p~iP--~tV~DQIrLWE~ErnRl~~~~g 140 (166)
|++| .|..+=.+.|+.--+-+|++++
T Consensus 108 ~~~~~~~~~PG~~TptE~~~A~~~Gad~vK~FPa 141 (217)
T 3lab_A 108 DGQWQGVFLPGVATASEVMIAAQAGITQLKCFPA 141 (217)
T ss_dssp HCSCCCEEEEEECSHHHHHHHHHTTCCEEEETTT
T ss_pred CccCCCeEeCCCCCHHHHHHHHHcCCCEEEECcc
Confidence 7777 5777777788888888888775
No 4
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=42.88 E-value=22 Score=28.68 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=25.9
Q ss_pred HHHHHHHhhHhhc-----CceEEEEeCHHHHHHHHHcCCC
Q 036799 66 EILRLFSKIEYQL-----PNLIVGATTKESLNNAFENGIT 100 (166)
Q Consensus 66 aiL~lF~~l~~r~-----PNlvvG~iTR~Sv~~Al~~GIT 100 (166)
.+..+|.++..+- -|-+||+|||.-+.+|+..-.|
T Consensus 210 ~v~~LF~~lglr~l~V~~~GrLVGIVTrkDl~kai~~~~~ 249 (250)
T 2d4z_A 210 KTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQAAIEGSYQ 249 (250)
T ss_dssp HHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHC---
T ss_pred HHHHHHHHhCCeEEEEEECCEEEEEEEHHHHHHHHHHHhc
Confidence 5778898877543 3568999999999999985443
No 5
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=33.40 E-value=36 Score=27.75 Aligned_cols=88 Identities=23% Similarity=0.287 Sum_probs=58.7
Q ss_pred CceEEEEecceEEEEcCCHhHHHHHHHHHhhHhhcCceEEE---EeCHHHHHHHHHcCCChhh-hhcChhhh-----hcC
Q 036799 44 QGFVVVETNFRMYAYSTSKLHYEILRLFSKIEYQLPNLIVG---ATTKESLNNAFENGITAEQ-QNAHPRVA-----DRI 114 (166)
Q Consensus 44 ~gfIIvETNFRvYAYT~S~LqiaiL~lF~~l~~r~PNlvvG---~iTR~Sv~~Al~~GITA~Q-~~AHp~m~-----~~~ 114 (166)
.|.-.+|--+| +|-.. ..+.++..++|++++| ++|.+.++.|.+.|-.-=- -...|.+. ...
T Consensus 58 gGi~~iEvt~~------t~~a~---e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~~~~~vi~~~~~~gi 128 (232)
T 4e38_A 58 NGLPAAEITFR------SDAAV---EAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVSPGFNPNTVRACQEIGI 128 (232)
T ss_dssp TTCCEEEEETT------STTHH---HHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEECSSCCHHHHHHHHHHTC
T ss_pred CCCCEEEEeCC------CCCHH---HHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHcCC
Confidence 56777887665 44333 4455567788999999 8999999999999853211 11222221 134
Q ss_pred CCCC--HHHHHHHHHHHHhcCceeeccc
Q 036799 115 PSIP--ENVCDQIRLWESDLNRVEMTPA 140 (166)
Q Consensus 115 p~iP--~tV~DQIrLWE~ErnRl~~~~g 140 (166)
|++| .|..+=.+-|+.--+-++++++
T Consensus 129 ~~ipGv~TptEi~~A~~~Gad~vK~FPa 156 (232)
T 4e38_A 129 DIVPGVNNPSTVEAALEMGLTTLKFFPA 156 (232)
T ss_dssp EEECEECSHHHHHHHHHTTCCEEEECST
T ss_pred CEEcCCCCHHHHHHHHHcCCCEEEECcC
Confidence 6666 4666667788888888888775
No 6
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=28.29 E-value=24 Score=25.07 Aligned_cols=49 Identities=6% Similarity=-0.006 Sum_probs=31.1
Q ss_pred eCHHHHH-HH---HHcCCChhhhhcChhhhhcCCCCCHHHHHHHHHHHHhcCc
Q 036799 86 TTKESLN-NA---FENGITAEQQNAHPRVADRIPSIPENVCDQIRLWESDLNR 134 (166)
Q Consensus 86 iTR~Sv~-~A---l~~GITA~Q~~AHp~m~~~~p~iP~tV~DQIrLWE~ErnR 134 (166)
++|...- -| ...|.+.++...+=.-++..-...+.+..|++.||.+++|
T Consensus 92 ~sRS~~~v~ayLm~~~~~~~~~A~~~v~~~Rp~~~pn~~f~~qL~~~e~~~~~ 144 (144)
T 3s4e_A 92 VSRAAAIVIGFLMNSEQTSFTSAFSLVKNARPSICPNSGFMEQLRTYQEGKES 144 (144)
T ss_dssp SSHHHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCCCCHHHHHHHHHTTHHHHC
T ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHHHCCCcCCCHHHHHHHHHHHHhccC
Confidence 5776442 23 2589999996555222222223347899999999988754
No 7
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=27.94 E-value=37 Score=23.26 Aligned_cols=44 Identities=18% Similarity=0.137 Sum_probs=27.9
Q ss_pred EEEcCCHhHHHHHHHHHhhHhh-cC-----ceEEEEeCHHHHHHHHHcCCC
Q 036799 56 YAYSTSKLHYEILRLFSKIEYQ-LP-----NLIVGATTKESLNNAFENGIT 100 (166)
Q Consensus 56 YAYT~S~LqiaiL~lF~~l~~r-~P-----NlvvG~iTR~Sv~~Al~~GIT 100 (166)
++..+.++. .++.+|.+-..+ +| +-++|+||++.+-+++...||
T Consensus 81 ~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g~i~ 130 (130)
T 3hf7_A 81 FVPEGTPLS-TQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFT 130 (130)
T ss_dssp EEETTCBHH-HHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC---
T ss_pred EeCCCCcHH-HHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhCCCC
Confidence 344445553 567777765433 22 468999999999999987665
No 8
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=25.91 E-value=24 Score=23.41 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=18.2
Q ss_pred ceEEEEeCHHHHHHHHHcCCCh
Q 036799 80 NLIVGATTKESLNNAFENGITA 101 (166)
Q Consensus 80 NlvvG~iTR~Sv~~Al~~GITA 101 (166)
+-.+|.||++.+.+++..|...
T Consensus 41 ~~~~G~it~~dl~~~~~~~~~~ 62 (125)
T 1pbj_A 41 GVRVGIVTTWDVLEAIAEGDDL 62 (125)
T ss_dssp TEEEEEEEHHHHHHHHHHTCCT
T ss_pred CeeEEEEeHHHHHHHHhcCCcc
Confidence 5678999999999998877543
No 9
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=25.22 E-value=35 Score=23.02 Aligned_cols=14 Identities=14% Similarity=0.411 Sum_probs=11.8
Q ss_pred HHHHHHHHHcCCCC
Q 036799 153 EAACDYARDRSGLL 166 (166)
Q Consensus 153 ~~~~~yA~~~g~Ll 166 (166)
+.|++||+++|.++
T Consensus 32 ~eV~~YC~~kGwIi 45 (60)
T 1ng7_A 32 QEVRDYCEKKGWIV 45 (60)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHCCcee
Confidence 57899999999864
No 10
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=24.46 E-value=24 Score=24.65 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.3
Q ss_pred ceEEEEeCHHHHHHHHHcCCC
Q 036799 80 NLIVGATTKESLNNAFENGIT 100 (166)
Q Consensus 80 NlvvG~iTR~Sv~~Al~~GIT 100 (166)
+=++|+||+..+.+++..|..
T Consensus 71 ~~~~Givt~~dl~~~~~~~~~ 91 (149)
T 3k2v_A 71 MNIIGIFTDGDLRRVFDTGVD 91 (149)
T ss_dssp CBEEEEEEHHHHHHHHCSSSC
T ss_pred CcEEEEecHHHHHHHHhcCCC
Confidence 468999999999999988765
No 11
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6
Probab=23.73 E-value=35 Score=29.20 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCC
Q 036799 145 EFPSRDVFEAACDYARDRSGL 165 (166)
Q Consensus 145 ~F~s~~~f~~~~~yA~~~g~L 165 (166)
.|-+++|++.+++||+++|+-
T Consensus 90 g~YT~~di~eiv~YA~~rgI~ 110 (367)
T 1yht_A 90 PFLSYRQLDDIKAYAKAKGIE 110 (367)
T ss_dssp EEBCHHHHHHHHHHHHHTTCE
T ss_pred CCcCHHHHHHHHHHHHHcCCE
Confidence 477999999999999999984
No 12
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=22.67 E-value=1.2e+02 Score=20.99 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=26.6
Q ss_pred EEcCCHhHHHHHHHHHhhHh-hcC-----ceEEEEeCHHHHHHHHHcCCCh
Q 036799 57 AYSTSKLHYEILRLFSKIEY-QLP-----NLIVGATTKESLNNAFENGITA 101 (166)
Q Consensus 57 AYT~S~LqiaiL~lF~~l~~-r~P-----NlvvG~iTR~Sv~~Al~~GITA 101 (166)
+..+.++. .++.+|.+-.. .+| +-++|+||+..+-+++...|.-
T Consensus 98 v~~~~~l~-~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~~d 147 (153)
T 3oco_A 98 VPENMKVP-DVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNLRD 147 (153)
T ss_dssp EETTSBHH-HHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC----
T ss_pred ECCCCCHH-HHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccCCC
Confidence 33444443 45666665443 233 5789999999999999877654
No 13
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=21.87 E-value=45 Score=20.04 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=15.3
Q ss_pred ceEEEEeCHHHHHHHHHc
Q 036799 80 NLIVGATTKESLNNAFEN 97 (166)
Q Consensus 80 NlvvG~iTR~Sv~~Al~~ 97 (166)
+-++|++|+..+.+++..
T Consensus 32 ~~l~Givt~~dl~~~~~~ 49 (70)
T 3fio_A 32 DEILGVVTERDILDKVVA 49 (70)
T ss_dssp TEEEEEEEHHHHHHHTTT
T ss_pred CEEEEEEEHHHHHHHHHH
Confidence 568999999999998754
No 14
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus pneumoniae} PDB: 2yla_A* 2yl9_A*
Probab=21.34 E-value=48 Score=29.13 Aligned_cols=22 Identities=9% Similarity=0.068 Sum_probs=19.8
Q ss_pred cCCCCHHHHHHHHHHHHHcCCC
Q 036799 144 DEFPSRDVFEAACDYARDRSGL 165 (166)
Q Consensus 144 ~~F~s~~~f~~~~~yA~~~g~L 165 (166)
..|-+++|++.+++||+++|+-
T Consensus 89 ~~~YT~~di~eIv~YA~~rgI~ 110 (442)
T 2yl5_A 89 GTALTQAEVTELIEYAKSKDIG 110 (442)
T ss_dssp CSCBCHHHHHHHHHHHHTTTCE
T ss_pred CCCcCHHHHHHHHHHHHHcCCe
Confidence 5678999999999999999984
No 15
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Probab=20.25 E-value=58 Score=29.67 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.6
Q ss_pred ecCCCCHHHHHHHHHHHHHcCCC
Q 036799 143 YDEFPSRDVFEAACDYARDRSGL 165 (166)
Q Consensus 143 y~~F~s~~~f~~~~~yA~~~g~L 165 (166)
+..|-+++|++.+++||+++|+-
T Consensus 217 ~~g~YT~~di~eIv~YA~~rgI~ 239 (543)
T 3rcn_A 217 HGGFYTQDDLREIVAFAADRHIT 239 (543)
T ss_dssp EECCBCHHHHHHHHHHHHHTTCE
T ss_pred cCCCcCHHHHHHHHHHHHHcCCE
Confidence 46788999999999999999984
Done!